Query 002335
Match_columns 935
No_of_seqs 595 out of 2464
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 22:07:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v53_A RNA-binding protein 25; 100.0 4E-38 1.4E-42 292.5 10.4 106 825-930 13-118 (119)
2 1mp1_A Ser/Arg-related nuclear 99.9 3.8E-23 1.3E-27 190.7 8.0 90 836-930 6-97 (111)
3 1x4q_A U4/U6 small nuclear rib 99.8 5.7E-20 1.9E-24 165.3 6.9 70 855-924 14-83 (92)
4 3pgw_S U1-70K; protein-RNA com 99.8 3.5E-19 1.2E-23 205.5 9.1 83 216-298 100-182 (437)
5 4fxv_A ELAV-like protein 1; RN 99.7 2.9E-17 9.9E-22 151.0 9.9 82 216-297 17-98 (99)
6 3s8s_A Histone-lysine N-methyl 99.7 1.4E-16 4.6E-21 149.4 11.7 87 216-302 4-90 (110)
7 2lxi_A RNA-binding protein 10; 99.7 4.2E-17 1.4E-21 147.4 4.6 81 218-298 1-83 (91)
8 3n9u_C Cleavage and polyadenyl 99.7 3.8E-16 1.3E-20 155.5 11.9 82 217-298 54-137 (156)
9 2lkz_A RNA-binding protein 5; 99.6 2.2E-16 7.6E-21 144.1 8.1 81 217-297 8-94 (95)
10 3ns6_A Eukaryotic translation 99.6 2.6E-16 8.8E-21 144.7 7.1 85 217-301 5-96 (100)
11 2x1f_A MRNA 3'-END-processing 99.6 1.1E-15 3.7E-20 139.0 10.4 85 217-301 1-85 (96)
12 2e5h_A Zinc finger CCHC-type a 99.6 2.1E-15 7.1E-20 136.2 12.0 81 216-296 14-94 (94)
13 2khc_A Testis-specific RNP-typ 99.6 2.2E-15 7.6E-20 142.1 12.6 81 215-295 37-117 (118)
14 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.2E-15 4.2E-20 135.6 9.9 82 216-297 4-85 (87)
15 3p5t_L Cleavage and polyadenyl 99.6 4.2E-16 1.4E-20 140.2 6.5 80 219-298 2-83 (90)
16 2la6_A RNA-binding protein FUS 99.6 1.6E-15 5.5E-20 138.7 10.4 81 216-296 11-99 (99)
17 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.5E-15 5.2E-20 134.4 9.9 81 216-296 5-85 (85)
18 3md1_A Nuclear and cytoplasmic 99.6 1.4E-15 4.8E-20 134.0 9.5 80 219-298 2-81 (83)
19 2cq4_A RNA binding motif prote 99.6 1.3E-15 4.5E-20 142.9 9.2 82 216-298 23-104 (114)
20 2cpz_A CUG triplet repeat RNA- 99.6 4.1E-15 1.4E-19 139.8 12.2 83 216-298 23-105 (115)
21 1x5u_A Splicing factor 3B subu 99.6 2.9E-15 1E-19 138.2 10.9 83 216-298 13-95 (105)
22 2cqb_A Peptidyl-prolyl CIS-tra 99.6 2.6E-15 8.8E-20 137.9 10.5 83 216-298 10-92 (102)
23 2dnz_A Probable RNA-binding pr 99.6 2.3E-15 7.8E-20 136.3 9.8 83 216-298 3-85 (95)
24 2dgs_A DAZ-associated protein 99.6 2.5E-15 8.6E-20 137.3 10.1 82 216-298 8-89 (99)
25 2cqc_A Arginine/serine-rich sp 99.6 3.6E-15 1.2E-19 134.8 11.0 82 216-297 13-94 (95)
26 1x5t_A Splicing factor 3B subu 99.6 2.3E-15 8E-20 136.4 9.8 83 216-298 3-86 (96)
27 1whw_A Hypothetical protein ri 99.6 3.1E-15 1.1E-19 136.5 10.6 83 216-298 6-88 (99)
28 4f25_A Polyadenylate-binding p 99.6 1.7E-15 6E-20 142.7 8.9 79 218-298 5-83 (115)
29 1oo0_B CG8781-PA, drosophila Y 99.6 3.1E-15 1.1E-19 139.3 10.5 83 216-298 24-106 (110)
30 1p27_B RNA-binding protein 8A; 99.6 2.3E-15 7.9E-20 139.1 9.4 83 216-298 21-103 (106)
31 2dnm_A SRP46 splicing factor; 99.6 2.4E-15 8.3E-20 138.4 9.2 83 216-298 11-93 (103)
32 2dgo_A Cytotoxic granule-assoc 99.6 4.7E-15 1.6E-19 139.2 11.4 84 215-298 12-95 (115)
33 2do4_A Squamous cell carcinoma 99.6 5.5E-15 1.9E-19 135.3 11.4 82 216-298 15-96 (100)
34 1x4h_A RNA-binding protein 28; 99.6 4.2E-15 1.4E-19 138.4 10.8 83 216-298 13-101 (111)
35 2jrs_A RNA-binding protein 39; 99.6 2.7E-15 9.2E-20 139.9 9.2 84 215-298 23-106 (108)
36 1x5s_A Cold-inducible RNA-bind 99.6 4E-15 1.4E-19 136.6 10.2 83 216-298 10-92 (102)
37 2cq0_A Eukaryotic translation 99.6 3.4E-15 1.2E-19 137.4 9.6 84 215-298 12-95 (103)
38 1u6f_A Tcubp1, RNA-binding pro 99.6 1.1E-14 3.7E-19 141.5 13.5 84 215-298 39-122 (139)
39 2dgp_A Bruno-like 4, RNA bindi 99.6 4.7E-15 1.6E-19 137.1 10.4 84 215-298 10-96 (106)
40 2cph_A RNA binding motif prote 99.6 5E-15 1.7E-19 137.0 10.6 84 215-298 12-97 (107)
41 2cpe_A RNA-binding protein EWS 99.6 5.8E-15 2E-19 138.2 10.9 84 215-298 12-103 (113)
42 2ywk_A Putative RNA-binding pr 99.6 4.4E-15 1.5E-19 134.4 9.0 81 216-297 14-94 (95)
43 1s79_A Lupus LA protein; RRM, 99.6 3.1E-15 1E-19 138.5 8.0 80 216-297 9-88 (103)
44 2kxn_B Transformer-2 protein h 99.6 4.6E-15 1.6E-19 143.0 9.6 83 216-298 44-126 (129)
45 2cpf_A RNA binding motif prote 99.6 3.5E-15 1.2E-19 135.9 8.2 83 216-298 3-88 (98)
46 3ulh_A THO complex subunit 4; 99.6 6.9E-15 2.4E-19 136.2 10.4 80 216-296 27-106 (107)
47 2div_A TRNA selenocysteine ass 99.6 4.4E-15 1.5E-19 135.5 8.8 82 216-297 7-93 (99)
48 2m2b_A RNA-binding protein 10; 99.6 2.8E-15 9.7E-20 144.5 7.7 82 216-298 21-108 (131)
49 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.6E-15 5.5E-20 139.2 5.7 81 216-298 17-98 (100)
50 2fy1_A RNA-binding motif prote 99.6 6.4E-15 2.2E-19 139.1 9.9 82 216-298 5-86 (116)
51 2mss_A Protein (musashi1); RNA 99.6 3.7E-15 1.3E-19 128.9 7.5 75 220-295 1-75 (75)
52 3s7r_A Heterogeneous nuclear r 99.6 7.4E-15 2.5E-19 130.8 9.7 80 215-295 8-87 (87)
53 3ex7_B RNA-binding protein 8A; 99.6 6.1E-15 2.1E-19 140.8 9.8 83 216-298 20-102 (126)
54 4a8x_A RNA-binding protein wit 99.6 5.7E-15 1.9E-19 131.5 8.8 81 217-297 3-84 (88)
55 2err_A Ataxin-2-binding protei 99.6 7.3E-15 2.5E-19 137.1 9.7 82 215-298 26-107 (109)
56 1p1t_A Cleavage stimulation fa 99.6 4.1E-15 1.4E-19 136.9 7.9 82 217-298 7-88 (104)
57 2dnh_A Bruno-like 5, RNA bindi 99.6 8.6E-15 2.9E-19 135.1 10.0 82 216-298 13-97 (105)
58 2cqp_A RNA-binding protein 12; 99.6 8E-15 2.7E-19 133.6 9.6 82 216-297 13-94 (98)
59 3ucg_A Polyadenylate-binding p 99.6 6.9E-15 2.4E-19 131.3 9.0 79 218-297 6-84 (89)
60 2cqi_A Nucleolysin TIAR; RNA r 99.6 2E-14 6.9E-19 132.2 12.3 82 215-298 12-93 (103)
61 2cqd_A RNA-binding region cont 99.5 1.5E-14 5E-19 136.2 11.0 82 215-297 14-95 (116)
62 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.9E-14 6.5E-19 139.4 12.1 80 216-295 61-140 (140)
63 2ek1_A RNA-binding protein 12; 99.5 6.4E-15 2.2E-19 133.3 8.0 81 217-297 14-94 (95)
64 1wi8_A EIF-4B, eukaryotic tran 99.5 8.5E-15 2.9E-19 135.0 8.8 81 216-298 13-94 (104)
65 2dh8_A DAZ-associated protein 99.5 8.7E-15 3E-19 135.1 8.8 83 215-298 13-95 (105)
66 2dng_A Eukaryotic translation 99.5 1.2E-14 4.2E-19 133.7 9.7 81 216-298 13-93 (103)
67 2nlw_A Eukaryotic translation 99.5 4.7E-15 1.6E-19 137.4 6.8 81 216-298 13-100 (105)
68 2kt5_A RNA and export factor-b 99.5 1.9E-14 6.5E-19 137.1 11.2 82 216-298 33-114 (124)
69 2dhg_A TRNA selenocysteine ass 99.5 6.7E-15 2.3E-19 135.6 7.7 82 216-298 7-90 (104)
70 2j8a_A Histone-lysine N-methyl 99.5 1.3E-14 4.3E-19 137.8 9.6 82 219-300 3-98 (136)
71 2wbr_A GW182, gawky, LD47780P; 99.5 2.4E-14 8.2E-19 127.6 10.8 74 217-296 6-79 (89)
72 2d9p_A Polyadenylate-binding p 99.5 1.3E-14 4.3E-19 133.6 9.5 81 216-298 13-93 (103)
73 1uaw_A Mouse-musashi-1; RNP-ty 99.5 4.9E-15 1.7E-19 128.6 6.3 76 219-295 1-76 (77)
74 2rs2_A Musashi-1, RNA-binding 99.5 1.1E-14 3.8E-19 135.9 9.2 83 215-298 22-104 (109)
75 2do0_A HnRNP M, heterogeneous 99.5 2.4E-14 8.2E-19 134.1 11.5 82 215-297 12-93 (114)
76 1x4e_A RNA binding motif, sing 99.5 2.1E-15 7.3E-20 133.7 4.0 81 216-296 3-83 (85)
77 2dgx_A KIAA0430 protein; RRM d 99.5 2E-14 6.7E-19 130.9 10.5 79 217-298 8-90 (96)
78 2cqg_A TDP-43, TAR DNA-binding 99.5 3E-14 1E-18 131.1 11.6 82 215-298 12-93 (103)
79 2cq3_A RNA-binding protein 9; 99.5 3.4E-14 1.1E-18 130.7 12.0 82 215-298 12-93 (103)
80 2db1_A Heterogeneous nuclear r 99.5 2.1E-14 7E-19 136.1 10.7 82 215-298 14-98 (118)
81 2ki2_A SS-DNA binding protein 99.5 2.9E-15 1E-19 134.3 4.5 79 219-298 2-80 (90)
82 2dgv_A HnRNP M, heterogeneous 99.5 1.2E-14 4.1E-19 130.7 8.5 81 216-298 6-86 (92)
83 1fj7_A Nucleolin RBD1, protein 99.5 4.8E-15 1.6E-19 135.9 5.9 81 216-298 15-95 (101)
84 2a3j_A U1 small nuclear ribonu 99.5 1.8E-14 6E-19 138.6 9.9 84 216-302 27-114 (127)
85 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.7E-14 5.7E-19 144.6 10.1 83 216-298 70-152 (165)
86 2dgw_A Probable RNA-binding pr 99.5 2.9E-14 1E-18 128.1 10.3 80 216-298 8-87 (91)
87 2cpy_A RNA-binding protein 12; 99.5 2.4E-14 8.2E-19 134.6 10.1 81 216-298 13-94 (114)
88 1h2v_Z 20 kDa nuclear CAP bind 99.5 2.2E-14 7.5E-19 142.2 10.3 82 216-297 37-118 (156)
89 2dis_A Unnamed protein product 99.5 1.6E-14 5.5E-19 134.1 8.5 83 216-298 6-92 (109)
90 1wel_A RNA-binding protein 12; 99.5 2.7E-14 9.4E-19 136.2 10.3 82 216-298 23-104 (124)
91 2kn4_A Immunoglobulin G-bindin 99.5 3.3E-14 1.1E-18 141.0 11.2 83 216-298 68-150 (158)
92 1x4b_A Heterogeneous nuclear r 99.5 1.7E-14 5.7E-19 135.8 8.6 81 217-298 26-106 (116)
93 2jwn_A Embryonic polyadenylate 99.5 1.6E-14 5.4E-19 137.5 8.5 80 217-297 35-114 (124)
94 1x4a_A Splicing factor, argini 99.5 5.9E-14 2E-18 130.5 11.9 80 216-298 20-99 (109)
95 1sjq_A Polypyrimidine tract-bi 99.5 2E-14 6.8E-19 133.2 8.6 76 216-297 14-91 (105)
96 2cpi_A CCR4-NOT transcription 99.5 1.6E-14 5.6E-19 135.1 7.8 83 216-298 13-101 (111)
97 1iqt_A AUF1, heterogeneous nuc 99.5 1.2E-14 4.2E-19 125.5 6.2 75 220-295 1-75 (75)
98 1nu4_A U1A RNA binding domain; 99.5 1.6E-14 5.6E-19 131.1 7.2 83 215-300 5-91 (97)
99 3lqv_A PRE-mRNA branch site pr 99.5 3.6E-14 1.2E-18 133.1 9.8 82 216-300 6-87 (115)
100 3q2s_C Cleavage and polyadenyl 99.5 1.4E-14 4.8E-19 153.2 7.2 82 217-298 67-150 (229)
101 2krb_A Eukaryotic translation 99.5 1.1E-14 3.8E-19 128.1 5.1 72 219-292 2-80 (81)
102 3r27_A HnRNP L, heterogeneous 99.5 5.1E-14 1.7E-18 129.3 9.4 77 216-298 19-97 (100)
103 2lea_A Serine/arginine-rich sp 99.5 2.1E-14 7E-19 139.4 7.2 83 216-298 45-127 (135)
104 2lmi_A GRSF-1, G-rich sequence 99.5 2.7E-14 9.1E-19 132.8 7.1 81 216-298 9-92 (107)
105 2cpx_A Hypothetical protein FL 99.5 5E-14 1.7E-18 132.1 9.0 83 216-298 23-105 (115)
106 1x4d_A Matrin 3; structural ge 99.5 2.4E-14 8.1E-19 132.3 6.3 77 216-298 13-92 (102)
107 2hgl_A HNRPF protein, heteroge 99.5 5.7E-14 2E-18 136.6 9.1 81 216-298 42-125 (136)
108 1x5o_A RNA binding motif, sing 99.5 1.2E-13 4.2E-18 129.3 11.0 82 215-297 22-111 (114)
109 2la4_A Nuclear and cytoplasmic 99.5 5.7E-14 2E-18 128.7 8.5 75 217-297 26-100 (101)
110 2cq1_A PTB-like protein L; RRM 99.5 1.1E-13 3.8E-18 127.6 10.4 77 216-298 13-91 (101)
111 2fc9_A NCL protein; structure 99.5 9.3E-14 3.2E-18 127.3 9.7 80 215-298 12-91 (101)
112 2jvr_A Nucleolar protein 3; RN 99.5 9.6E-14 3.3E-18 130.2 9.9 78 217-298 27-105 (111)
113 1wg5_A Heterogeneous nuclear r 99.5 7.2E-14 2.5E-18 129.2 8.6 80 216-297 13-93 (104)
114 1x4c_A Splicing factor, argini 99.5 1.3E-13 4.3E-18 128.3 10.3 75 216-297 13-92 (108)
115 3egn_A RNA-binding protein 40; 99.5 2.6E-14 8.9E-19 139.6 5.7 83 216-298 43-130 (143)
116 2xnq_A Nuclear polyadenylated 99.5 1.4E-13 4.8E-18 125.7 10.2 75 216-298 20-95 (97)
117 2ytc_A PRE-mRNA-splicing facto 99.5 1.3E-13 4.4E-18 122.0 9.6 76 215-296 9-85 (85)
118 1x4g_A Nucleolysin TIAR; struc 99.5 1.2E-13 4E-18 128.5 9.8 78 215-298 22-99 (109)
119 2e5j_A Methenyltetrahydrofolat 99.5 1.8E-13 6E-18 124.6 10.4 78 216-298 17-94 (97)
120 2jvo_A Nucleolar protein 3; nu 99.5 1.2E-13 4.2E-18 128.7 9.5 76 215-298 28-103 (108)
121 4f02_A Polyadenylate-binding p 99.5 1.3E-13 4.3E-18 143.7 10.7 83 216-298 13-95 (213)
122 2fc8_A NCL protein; structure 99.5 1.5E-13 5.2E-18 126.0 10.0 80 216-298 13-92 (102)
123 2ad9_A Polypyrimidine tract-bi 99.5 8.4E-14 2.9E-18 132.1 8.4 77 216-298 29-107 (119)
124 1why_A Hypothetical protein ri 99.5 2.2E-13 7.6E-18 123.9 10.9 77 216-298 15-93 (97)
125 2dnn_A RNA-binding protein 12; 99.5 1.3E-13 4.4E-18 129.0 9.3 78 217-297 15-92 (109)
126 1wez_A HnRNP H', FTP-3, hetero 99.5 5.5E-14 1.9E-18 129.7 6.6 79 216-297 13-91 (102)
127 2dnq_A RNA-binding protein 4B; 99.5 1.5E-13 5E-18 123.3 9.2 75 216-298 6-80 (90)
128 2f3j_A RNA and export factor b 99.5 1.5E-13 5.2E-18 139.6 10.3 82 216-298 86-167 (177)
129 2dgt_A RNA-binding protein 30; 99.4 3E-13 1E-17 121.8 10.7 76 215-298 7-82 (92)
130 2lcw_A RNA-binding protein FUS 99.2 8.6E-15 3E-19 137.8 0.0 83 216-298 5-95 (116)
131 2xs2_A Deleted in azoospermia- 99.4 6E-14 2.1E-18 128.8 5.6 80 217-299 8-87 (102)
132 2hvz_A Splicing factor, argini 99.4 1.1E-13 3.7E-18 126.8 7.2 75 219-298 1-75 (101)
133 1wex_A Hypothetical protein (r 99.4 1.4E-13 4.7E-18 127.7 7.9 76 216-297 13-90 (104)
134 1x4f_A Matrin 3; structural ge 99.4 1.6E-13 5.6E-18 128.7 8.4 78 215-298 22-102 (112)
135 1fjc_A Nucleolin RBD2, protein 99.4 9.5E-14 3.2E-18 125.9 6.5 79 215-298 13-91 (96)
136 1whx_A Hypothetical protein ri 99.4 1.7E-13 5.9E-18 128.3 8.5 75 217-297 9-83 (111)
137 2cpj_A Non-POU domain-containi 99.4 2.3E-13 8E-18 124.2 8.9 77 216-298 13-89 (99)
138 2dnp_A RNA-binding protein 14; 99.4 4.1E-13 1.4E-17 120.4 10.2 75 216-298 7-81 (90)
139 2dgu_A Heterogeneous nuclear r 99.4 4.5E-13 1.5E-17 123.3 10.5 75 216-298 9-83 (103)
140 3pgw_A U1-A; protein-RNA compl 99.4 3E-12 1E-16 138.5 18.0 77 215-296 204-281 (282)
141 2i2y_A Fusion protein consists 99.4 3.8E-13 1.3E-17 132.4 9.8 79 215-298 70-148 (150)
142 2e44_A Insulin-like growth fac 99.4 4.4E-13 1.5E-17 121.5 9.2 79 216-298 13-92 (96)
143 2cqh_A IGF-II mRNA-binding pro 99.4 5.2E-13 1.8E-17 120.3 9.4 76 216-298 6-83 (93)
144 2kvi_A Nuclear polyadenylated 99.4 3E-13 1E-17 122.9 7.8 75 216-298 8-83 (96)
145 3md3_A Nuclear and cytoplasmic 99.4 6.4E-13 2.2E-17 131.1 10.7 81 216-296 85-165 (166)
146 1fxl_A Paraneoplastic encephal 99.4 5.7E-13 2E-17 131.6 10.1 81 218-298 2-82 (167)
147 2cpd_A Apobec-1 stimulating pr 99.4 6.6E-13 2.2E-17 121.2 9.7 75 216-298 13-89 (99)
148 1wf1_A RNA-binding protein RAL 99.4 1E-12 3.5E-17 122.4 10.9 73 217-297 26-99 (110)
149 1b7f_A Protein (SXL-lethal pro 99.4 5.4E-13 1.9E-17 132.2 9.4 81 217-297 2-82 (168)
150 2e5g_A U6 snRNA-specific termi 99.4 3.9E-13 1.3E-17 121.6 7.5 75 217-297 7-81 (94)
151 2dha_A FLJ20171 protein; RRM d 99.4 3.5E-13 1.2E-17 128.8 7.3 80 216-297 21-104 (123)
152 1wg1_A KIAA1579 protein, homol 99.4 7.2E-13 2.5E-17 118.4 8.3 74 217-297 4-77 (88)
153 2cq2_A Hypothetical protein LO 99.4 8.3E-13 2.8E-17 124.1 8.9 77 216-298 23-106 (114)
154 2g4b_A Splicing factor U2AF 65 99.4 6.8E-13 2.3E-17 132.2 8.8 78 218-295 94-171 (172)
155 2hgn_A Heterogeneous nuclear r 99.4 2E-13 6.8E-18 133.2 4.7 80 216-298 44-123 (139)
156 4f02_A Polyadenylate-binding p 99.4 1E-12 3.5E-17 136.8 10.4 79 218-298 103-181 (213)
157 2hgm_A HNRPF protein, heteroge 99.4 4.8E-13 1.6E-17 128.3 6.9 79 216-297 40-120 (126)
158 1x5p_A Negative elongation fac 99.4 1.5E-12 5.2E-17 118.4 9.9 75 216-298 13-87 (97)
159 2dnl_A Cytoplasmic polyadenyla 99.4 9E-13 3.1E-17 123.8 8.2 78 216-296 6-86 (114)
160 2cjk_A Nuclear polyadenylated 99.4 6.9E-13 2.3E-17 131.5 7.7 81 217-298 86-166 (167)
161 2qfj_A FBP-interacting repress 99.4 1E-12 3.4E-17 135.9 9.3 83 216-298 123-205 (216)
162 3d2w_A TAR DNA-binding protein 99.4 1.4E-12 4.9E-17 117.1 8.9 74 216-298 9-84 (89)
163 1l3k_A Heterogeneous nuclear r 99.4 1.1E-12 3.7E-17 133.5 9.2 82 216-298 11-92 (196)
164 3beg_B Splicing factor, argini 99.4 8.2E-13 2.8E-17 124.4 7.3 74 217-297 15-93 (115)
165 2diu_A KIAA0430 protein; struc 99.3 1.8E-12 6.1E-17 116.7 8.4 71 218-298 8-84 (96)
166 1sjr_A Polypyrimidine tract-bi 99.3 2E-12 6.8E-17 128.9 9.6 77 218-298 46-124 (164)
167 2yh0_A Splicing factor U2AF 65 99.3 1.6E-12 5.5E-17 132.5 8.8 83 216-298 112-194 (198)
168 3md3_A Nuclear and cytoplasmic 99.3 2E-12 6.7E-17 127.6 8.9 78 219-297 1-78 (166)
169 1l3k_A Heterogeneous nuclear r 99.3 2E-12 6.7E-17 131.6 9.1 81 217-298 103-183 (196)
170 2qfj_A FBP-interacting repress 99.3 1.8E-12 6.2E-17 134.0 8.9 83 217-299 27-109 (216)
171 3tyt_A Heterogeneous nuclear r 99.3 2.5E-12 8.4E-17 133.6 9.7 76 217-297 3-79 (205)
172 3zzy_A Polypyrimidine tract-bi 99.3 2.9E-12 9.8E-17 123.2 9.3 77 217-298 27-106 (130)
173 2hzc_A Splicing factor U2AF 65 99.3 2.4E-12 8.3E-17 114.2 8.0 72 216-294 4-86 (87)
174 2pe8_A Splicing factor 45; RRM 99.3 5.8E-12 2E-16 116.9 10.5 82 216-297 6-93 (105)
175 2bz2_A Negative elongation fac 99.3 3.6E-12 1.2E-16 121.3 8.9 75 216-298 37-111 (121)
176 1b7f_A Protein (SXL-lethal pro 99.3 3.4E-12 1.2E-16 126.4 9.0 80 216-295 87-168 (168)
177 1fxl_A Paraneoplastic encephal 99.3 4.2E-12 1.4E-16 125.3 9.1 79 217-295 87-167 (167)
178 2e5i_A Heterogeneous nuclear r 99.3 4.5E-12 1.5E-16 121.1 8.8 74 219-298 26-102 (124)
179 3pgw_A U1-A; protein-RNA compl 99.3 6.1E-12 2.1E-16 136.1 10.6 84 214-300 5-92 (282)
180 2cjk_A Nuclear polyadenylated 99.3 3.8E-12 1.3E-16 126.1 8.2 80 217-298 2-81 (167)
181 3nmr_A Cugbp ELAV-like family 99.3 4.7E-12 1.6E-16 126.1 8.7 79 217-296 94-175 (175)
182 2voo_A Lupus LA protein; RNA-b 99.3 5.3E-12 1.8E-16 129.9 8.6 78 218-297 109-186 (193)
183 1wf0_A TDP-43, TAR DNA-binding 99.3 3.2E-12 1.1E-16 114.0 5.5 75 217-298 4-78 (88)
184 3nmr_A Cugbp ELAV-like family 99.2 9.1E-12 3.1E-16 124.0 8.6 81 217-297 2-87 (175)
185 2adc_A Polypyrimidine tract-bi 99.2 1.7E-11 5.8E-16 129.0 9.6 78 216-298 32-110 (229)
186 1fje_B Nucleolin RBD12, protei 99.2 1.5E-11 5E-16 123.1 8.0 77 216-297 97-173 (175)
187 2ghp_A U4/U6 snRNA-associated 99.2 1.7E-11 5.8E-16 133.3 9.1 82 216-298 208-291 (292)
188 3u1l_A PRE-mRNA-splicing facto 99.2 1.2E-11 4.2E-16 130.9 7.3 79 215-299 131-230 (240)
189 1fje_B Nucleolin RBD12, protei 99.2 1.1E-11 3.7E-16 124.0 6.5 82 215-298 10-91 (175)
190 3smz_A Protein raver-1, ribonu 99.2 3.5E-11 1.2E-15 130.2 10.8 82 217-298 94-175 (284)
191 3tyt_A Heterogeneous nuclear r 99.2 3.1E-11 1.1E-15 125.3 8.9 78 216-295 121-204 (205)
192 3smz_A Protein raver-1, ribonu 99.2 3.9E-11 1.3E-15 129.9 9.4 83 216-299 182-265 (284)
193 1qm9_A Polypyrimidine tract-bi 99.2 3.2E-11 1.1E-15 123.4 7.6 76 218-298 3-79 (198)
194 3v4m_A Splicing factor U2AF 65 99.2 7.4E-11 2.5E-15 109.4 9.3 82 216-297 3-96 (105)
195 2dit_A HIV TAT specific factor 99.2 5.3E-11 1.8E-15 111.3 8.1 79 216-298 13-102 (112)
196 2yh0_A Splicing factor U2AF 65 99.1 1.6E-11 5.6E-16 125.0 4.2 80 217-297 3-87 (198)
197 1jmt_A Splicing factor U2AF 35 99.1 2.1E-11 7.3E-16 112.9 4.4 72 223-295 20-103 (104)
198 3sde_A Paraspeckle component 1 99.1 1.1E-10 3.7E-15 125.3 10.1 76 216-297 20-95 (261)
199 1qm9_A Polypyrimidine tract-bi 99.1 1.1E-10 3.9E-15 119.2 8.4 77 216-297 118-196 (198)
200 2ghp_A U4/U6 snRNA-associated 99.1 1.3E-10 4.4E-15 126.3 9.2 81 217-298 116-197 (292)
201 3sde_A Paraspeckle component 1 99.1 1.6E-10 5.4E-15 124.1 9.2 80 217-297 95-178 (261)
202 3ue2_A Poly(U)-binding-splicin 99.1 1.8E-10 6.2E-15 109.1 7.7 81 217-297 19-108 (118)
203 2adc_A Polypyrimidine tract-bi 99.1 2.4E-10 8.3E-15 120.2 9.1 77 216-297 149-227 (229)
204 2g4b_A Splicing factor U2AF 65 99.0 3.6E-10 1.2E-14 112.3 8.3 74 217-297 3-87 (172)
205 3tht_A Alkylated DNA repair pr 98.9 1.2E-09 4.2E-14 121.5 9.0 77 215-297 15-98 (345)
206 2d9o_A DNAJ (HSP40) homolog, s 98.9 4.3E-09 1.5E-13 96.6 9.1 64 228-298 27-90 (100)
207 3s6e_A RNA-binding protein 39; 98.9 7.6E-09 2.6E-13 97.3 9.9 77 217-297 6-92 (114)
208 1owx_A Lupus LA protein, SS-B, 98.8 1.8E-08 6.2E-13 95.3 10.0 87 216-308 16-108 (121)
209 2dnr_A Synaptojanin-1; RRM dom 98.7 2.8E-08 9.6E-13 88.7 7.9 73 216-297 5-85 (91)
210 1ufw_A Synaptojanin 2; RNP dom 98.6 1.1E-07 3.8E-12 85.3 7.9 71 215-294 12-91 (95)
211 3dxb_A Thioredoxin N-terminall 98.4 4.9E-07 1.7E-11 94.3 7.7 68 230-297 141-212 (222)
212 2l9w_A U4/U6 snRNA-associated- 97.9 6.5E-05 2.2E-09 68.8 9.9 71 217-293 20-95 (117)
213 1wey_A Calcipressin 1; structu 96.3 0.006 2.1E-07 55.6 6.6 76 217-298 4-84 (104)
214 1whv_A Poly(A)-specific ribonu 95.1 0.087 3E-06 47.3 8.7 54 219-281 17-70 (100)
215 1uw4_A UPF3X; nonsense mediate 94.7 0.067 2.3E-06 47.8 7.2 68 219-286 2-71 (91)
216 2dhx_A Poly (ADP-ribose) polym 94.1 0.11 3.7E-06 47.3 7.0 67 218-293 8-79 (104)
217 3ctr_A Poly(A)-specific ribonu 93.0 0.068 2.3E-06 48.2 3.8 53 220-281 8-60 (101)
218 1wwh_A Nucleoporin 35, nucleop 93.0 0.19 6.5E-06 47.0 6.9 69 218-294 24-93 (119)
219 2kn4_A Immunoglobulin G-bindin 92.4 0.083 2.8E-06 51.2 3.8 36 247-284 2-37 (158)
220 2i2y_A Fusion protein consists 91.6 0.08 2.7E-06 51.0 2.7 47 248-297 3-50 (150)
221 3p3d_A Nucleoporin 53; structu 88.9 0.8 2.7E-05 43.4 6.9 82 220-305 9-104 (132)
222 3pq1_A Poly(A) RNA polymerase; 88.0 0.25 8.6E-06 56.7 3.4 56 218-279 53-108 (464)
223 2l08_A Regulator of nonsense t 86.2 0.77 2.6E-05 41.3 4.8 69 218-286 9-79 (97)
224 3m91_B Prokaryotic ubiquitin-l 69.0 1.7 5.8E-05 32.8 1.2 23 892-914 16-38 (44)
225 2v75_A Nuclear polyadenylated 67.3 14 0.00048 32.7 6.8 70 855-928 6-81 (104)
226 3d45_A Poly(A)-specific ribonu 65.3 9.2 0.00031 44.5 7.2 55 218-281 440-494 (507)
227 3qks_C DNA double-strand break 56.7 5.1 0.00017 28.3 1.7 25 863-887 7-31 (34)
228 3m9d_G Prokaryotic ubiquitin-l 39.3 3.9 0.00013 33.7 -1.2 24 891-914 39-62 (68)
229 3rmi_A Chorismate mutase prote 28.5 1.5E+02 0.0051 27.0 7.4 24 908-931 77-100 (114)
230 2g0c_A ATP-dependent RNA helic 28.2 79 0.0027 26.2 5.1 58 229-295 12-74 (76)
No 1
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=100.00 E-value=4e-38 Score=292.48 Aligned_cols=106 Identities=44% Similarity=0.889 Sum_probs=101.3
Q ss_pred HHHHhhhcCCCChhhhhhhcccccccchhhHHhhhhhHHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhh
Q 002335 825 DAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILD 904 (935)
Q Consensus 825 ~~~~l~~~ip~~k~~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~~~~~~~~l~~~ld 904 (935)
++++||++||++|++||+|+|+|++||.++|+++|||||+|||+||||++|++|||||+++|.+|.+|+.|+++|++|||
T Consensus 13 ~~k~li~~IP~~Ke~Lf~~~i~W~~vd~~~i~~~lkPWI~kKI~E~LG~eEd~LVdfI~~~L~~~~~pk~l~~~L~~~LD 92 (119)
T 3v53_A 13 HIKSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLD 92 (119)
T ss_dssp SSHHHHHHSCSSHHHHHHSCCCTTTSCHHHHHHTHHHHHHHHHHHHTC---CHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHhcccCChhhhhHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc
Q 002335 905 DEAEMFVLKMWRMLIFEIKKVETGLA 930 (935)
Q Consensus 905 ~~a~~fv~~lwr~li~e~~~~~~g~~ 930 (935)
++|+.||.+||||||||+++++.||+
T Consensus 93 eeA~~FV~kLWrlLIfe~ea~~~Gl~ 118 (119)
T 3v53_A 93 EEAEVFIVKMWRLLIYETEAKKIGLV 118 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999999999997
No 2
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Probab=99.88 E-value=3.8e-23 Score=190.68 Aligned_cols=90 Identities=21% Similarity=0.461 Sum_probs=82.8
Q ss_pred ChhhhhhhcccccccchhhHHhhhhhHHHHHHHhhcCcchhHHHHHHHHhhhc-cCCHHHHHHHHHHhhh-HHHHHHHHH
Q 002335 836 TKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQD-HVKASQMLELLQTILD-DEAEMFVLK 913 (935)
Q Consensus 836 ~k~~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~-~~~~~~~~~~l~~~ld-~~a~~fv~~ 913 (935)
.+..+|+++|||..|+-. .|||||++||+||||++|++|||||+++|.. +.+|+.|+++|++||| ++|..||.+
T Consensus 6 kfp~~f~~kVD~~kV~l~----~ikpWI~kki~e~LG~EDdvlid~i~~~L~~~~~dpk~lqi~L~gFL~~e~a~~Fv~e 81 (111)
T 1mp1_A 6 KFAECLEKKVDMSKVNLE----VIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGE 81 (111)
T ss_dssp CCCSGGGGCCCTTTSCSG----GGHHHHHHHHHHHHSSCCSHHHHHHHHHTTSSSCCHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred cCCHHHhccccHHHhhHH----HHHHHHHHHHHHHcCCccHHHHHHHHHHhhccCCCHHHHHHHHHHHhCcccHHHHHHH
Confidence 456899999999999865 4999999999999999999999999999987 6899999999999999 999999999
Q ss_pred HHHHHHHHHHhhhhccc
Q 002335 914 MWRMLIFEIKKVETGLA 930 (935)
Q Consensus 914 lwr~li~e~~~~~~g~~ 930 (935)
||+||||. ++...||.
T Consensus 82 LW~LLi~a-q~~~~GIP 97 (111)
T 1mp1_A 82 LWPLLLSA-QENIAGIP 97 (111)
T ss_dssp HHHHHHHH-TTSSSSCC
T ss_pred HHHHHHHh-hcCCcCcC
Confidence 99999975 77778875
No 3
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.7e-20 Score=165.26 Aligned_cols=70 Identities=23% Similarity=0.380 Sum_probs=66.2
Q ss_pred HHhhhhhHHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 002335 855 LHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKK 924 (935)
Q Consensus 855 ~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~~~~~~~~l~~~ld~~a~~fv~~lwr~li~e~~~ 924 (935)
..++|||||++||+||||++|++||+||+++|++|.+|++|+++|++|||++|+.||.+||+|||+.+..
T Consensus 14 ~l~~lkpWI~kkv~e~LG~eD~~lVd~i~~~l~~~~dpk~l~~~L~~fLd~~a~~Fv~eLW~lL~~aq~s 83 (92)
T 1x4q_A 14 ELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDKLFEAVEEGRSS 83 (92)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTCCHHHHHHHHTTTTGGGTHHHHHHHHHHHHHHSCS
T ss_pred hHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC
Confidence 4578999999999999999999999999999999999999999999999999999999999999977643
No 4
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=3.5e-19 Score=205.55 Aligned_cols=83 Identities=18% Similarity=0.401 Sum_probs=79.1
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
.+.++|||+||++.|++.+|..+|+.||.|..|.|+.+..+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 764
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.70 E-value=2.9e-17 Score=150.98 Aligned_cols=82 Identities=21% Similarity=0.323 Sum_probs=78.2
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||||||+.+++++|+.+|+.||.|.+|++++++.+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34688999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 64
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=149.43 Aligned_cols=87 Identities=15% Similarity=0.240 Sum_probs=81.4
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
.+.++|||+||++.+++++|+.+|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred chhHHHH
Q 002335 296 QATREYL 302 (935)
Q Consensus 296 ~~~~~~l 302 (935)
.......
T Consensus 84 ~~~~~~~ 90 (110)
T 3s8s_A 84 IKGQQRM 90 (110)
T ss_dssp STTHHHH
T ss_pred CCCcHHH
Confidence 8764433
No 7
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.65 E-value=4.2e-17 Score=147.44 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=75.9
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcC-CcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEee
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKVD 295 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G-~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~L-ng~~i~gr~L~V~~a 295 (935)
+++|||+|||+.+++++|+.+|+.|| .|.+|+|++++.+|+++|||||+|.+.++|.+||..| |++.|+|+.|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999877 567899999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 764
No 8
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.65 E-value=3.8e-16 Score=155.52 Aligned_cols=82 Identities=23% Similarity=0.345 Sum_probs=77.7
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcC--CcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G--~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
..++||||||++.+++++|+.+|+.|| .|..|+|+.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8764
No 9
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=144.10 Aligned_cols=81 Identities=20% Similarity=0.375 Sum_probs=75.9
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCC--cceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCc----eeCCeEE
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGT--VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQEL 290 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~--V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~----~i~gr~L 290 (935)
.-.||||+||++.+++++|+.+|+.||. |.+|++++|+.+|+++|||||+|.+.++|.+||..|||. .|+|+.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4579999999999999999999999995 779999999999999999999999999999999999996 6999999
Q ss_pred EEEeech
Q 002335 291 MLKVDQA 297 (935)
Q Consensus 291 ~V~~a~~ 297 (935)
.|+|+.+
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999875
No 10
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.63 E-value=2.6e-16 Score=144.68 Aligned_cols=85 Identities=18% Similarity=0.224 Sum_probs=80.1
Q ss_pred CCcceeeccCCC------CCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCC-eE
Q 002335 217 PQTKVYVGKIAP------TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QE 289 (935)
Q Consensus 217 ~~~tlfVgnLp~------~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~g-r~ 289 (935)
..++|||+|||+ .+++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.+.++|.+||..|||+.|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 368999999999 99999999999999999999999998899999999999999999999999999999999 99
Q ss_pred EEEEeechhHHH
Q 002335 290 LMLKVDQATREY 301 (935)
Q Consensus 290 L~V~~a~~~~~~ 301 (935)
|.|.++.....|
T Consensus 85 l~V~~a~~~~~~ 96 (100)
T 3ns6_A 85 LFLYTMKDVERY 96 (100)
T ss_dssp CEEEESHHHHHH
T ss_pred EEEEECchhhhh
Confidence 999999876444
No 11
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.62 E-value=1.1e-15 Score=139.02 Aligned_cols=85 Identities=26% Similarity=0.393 Sum_probs=80.3
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
+.++|||+||+..+++++|+.+|+.||.|..|+++.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred hhHHH
Q 002335 297 ATREY 301 (935)
Q Consensus 297 ~~~~~ 301 (935)
.....
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 86544
No 12
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=136.25 Aligned_cols=81 Identities=15% Similarity=0.232 Sum_probs=77.4
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 45789999999999999999999999999999999999888999999999999999999999999999999999999987
Q ss_pred c
Q 002335 296 Q 296 (935)
Q Consensus 296 ~ 296 (935)
.
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 13
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.62 E-value=2.2e-15 Score=142.13 Aligned_cols=81 Identities=17% Similarity=0.273 Sum_probs=77.5
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||++.+++++|+.+|+.||.|..|+|+.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35578999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred e
Q 002335 295 D 295 (935)
Q Consensus 295 a 295 (935)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 6
No 14
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=135.64 Aligned_cols=82 Identities=16% Similarity=0.320 Sum_probs=76.9
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||+..+++++|+.+|+.||.|.+|.++.++.+|+++|||||+|.+.++|..||..|||+.|+|+.|.|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 75
No 15
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.61 E-value=4.2e-16 Score=140.17 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=72.7
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcC--CcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G--~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
.+||||||++.+++++|+.+|+.|| .|.+|+++.++.+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999998899999999999999999999999999999999999999887
Q ss_pred hh
Q 002335 297 AT 298 (935)
Q Consensus 297 ~~ 298 (935)
..
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 64
No 16
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=138.68 Aligned_cols=81 Identities=14% Similarity=0.225 Sum_probs=77.1
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcce--------eeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCC
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 287 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~--------vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~g 287 (935)
...++||||||++.+++++|+.+|+.||.|.. ++++.++.+|+++|||||+|.+.++|.+||..|||..|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 44689999999999999999999999999999 9999998899999999999999999999999999999999
Q ss_pred eEEEEEeec
Q 002335 288 QELMLKVDQ 296 (935)
Q Consensus 288 r~L~V~~a~ 296 (935)
+.|.|.++.
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999863
No 17
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.61 E-value=1.5e-15 Score=134.41 Aligned_cols=81 Identities=21% Similarity=0.362 Sum_probs=77.4
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|+++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred c
Q 002335 296 Q 296 (935)
Q Consensus 296 ~ 296 (935)
.
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 18
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.61 E-value=1.4e-15 Score=133.98 Aligned_cols=80 Identities=18% Similarity=0.320 Sum_probs=77.0
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeechh
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 298 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~~ 298 (935)
.+|||+|||..+++++|+.+|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+...
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999889999999999999999999999999999999999999998764
No 19
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=142.89 Aligned_cols=82 Identities=17% Similarity=0.251 Sum_probs=77.7
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|.|+.++.+|+++|||||+|.+.++|.+|| .|||+.|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 44689999999999999999999999999999999999888999999999999999999999 89999999999999997
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 664
No 20
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.60 E-value=4.1e-15 Score=139.78 Aligned_cols=83 Identities=17% Similarity=0.278 Sum_probs=78.9
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|+|+.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 103 ~~~ 105 (115)
T 2cpz_A 103 RSK 105 (115)
T ss_dssp CCS
T ss_pred CCC
Confidence 753
No 21
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.9e-15 Score=138.23 Aligned_cols=83 Identities=20% Similarity=0.398 Sum_probs=79.1
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|.++.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 93 ~~~ 95 (105)
T 1x5u_A 93 SAH 95 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 764
No 22
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=137.85 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=79.2
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|.|+.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 23
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=136.26 Aligned_cols=83 Identities=23% Similarity=0.425 Sum_probs=78.7
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
.+.++|||+||+..+++++|+.+|+.||.|..|.++.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 653
No 24
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=137.25 Aligned_cols=82 Identities=23% Similarity=0.383 Sum_probs=78.0
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|.|+.++.+|+++|||||+|.+.++|.+||. |||+.|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999999998899999999999999999999999 8999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 25
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.6e-15 Score=134.82 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=78.2
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 45789999999999999999999999999999999999888999999999999999999999999999999999999997
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 26
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=136.44 Aligned_cols=83 Identities=17% Similarity=0.366 Sum_probs=78.7
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCccee-eeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~v-ki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
.+.++|||+|||+.+++++|+.+|+.||.|..| +|+.++.+|.++|||||+|.+.++|.+||..|||+.|+|+.|.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 8763
No 27
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.1e-15 Score=136.51 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=79.1
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 28
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.59 E-value=1.7e-15 Score=142.71 Aligned_cols=79 Identities=18% Similarity=0.372 Sum_probs=74.0
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
.++||||||++.+++++|+.+|+.||.|.+|+|+.+. +.++|||||+|.+.++|.+||..|||+.|+|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999984 55789999999999999999999999999999999999875
Q ss_pred h
Q 002335 298 T 298 (935)
Q Consensus 298 ~ 298 (935)
.
T Consensus 83 ~ 83 (115)
T 4f25_A 83 R 83 (115)
T ss_dssp C
T ss_pred c
Confidence 4
No 29
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.59 E-value=3.1e-15 Score=139.35 Aligned_cols=83 Identities=22% Similarity=0.235 Sum_probs=78.9
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|.++.++.+|+++|||||+|.+.++|..||..|||+.|+|+.|.|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 753
No 30
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=139.14 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=78.8
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 653
No 31
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=138.39 Aligned_cols=83 Identities=20% Similarity=0.329 Sum_probs=79.0
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|.|+.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 45789999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 91 ~~~ 93 (103)
T 2dnm_A 91 RYG 93 (103)
T ss_dssp SSC
T ss_pred CcC
Confidence 753
No 32
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.59 E-value=4.7e-15 Score=139.22 Aligned_cols=84 Identities=15% Similarity=0.311 Sum_probs=79.5
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||++.+++++|+.+|+.||.|..|+|+.++.+|.++|||||+|.+.++|.+||..|||+.|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 92 a~~~ 95 (115)
T 2dgo_A 92 ATRK 95 (115)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 8763
No 33
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.5e-15 Score=135.25 Aligned_cols=82 Identities=17% Similarity=0.353 Sum_probs=77.8
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|.++.+. +|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 457899999999999999999999999999999999996 9999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 34
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.2e-15 Score=138.43 Aligned_cols=83 Identities=18% Similarity=0.354 Sum_probs=79.1
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhC------CceeCCeE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN------KFNIDGQE 289 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Ln------g~~i~gr~ 289 (935)
...++|||+||++.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|| |+.|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 457899999999999999999999999999999999998899999999999999999999999999 99999999
Q ss_pred EEEEeechh
Q 002335 290 LMLKVDQAT 298 (935)
Q Consensus 290 L~V~~a~~~ 298 (935)
|.|.|+...
T Consensus 93 l~v~~a~~~ 101 (111)
T 1x4h_A 93 LKVDLAVTR 101 (111)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999998764
No 35
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.58 E-value=2.7e-15 Score=139.93 Aligned_cols=84 Identities=23% Similarity=0.426 Sum_probs=79.3
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||+..+++++|+.+|+.||.|..|.++.++.+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8654
No 36
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4e-15 Score=136.58 Aligned_cols=83 Identities=18% Similarity=0.362 Sum_probs=79.0
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 764
No 37
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.4e-15 Score=137.40 Aligned_cols=84 Identities=18% Similarity=0.294 Sum_probs=79.5
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||++.+++++|+.+|+.||.|..|.|+.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34579999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 92 a~~~ 95 (103)
T 2cq0_A 92 AKPS 95 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8753
No 38
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-14 Score=141.45 Aligned_cols=84 Identities=23% Similarity=0.324 Sum_probs=79.6
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||++.+++++|+.+|+.||.|..|+|+.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 119 a~~~ 122 (139)
T 1u6f_A 119 AASG 122 (139)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8763
No 39
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.58 E-value=4.7e-15 Score=137.08 Aligned_cols=84 Identities=17% Similarity=0.277 Sum_probs=78.9
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCcee---CCeEEE
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQELM 291 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i---~gr~L~ 291 (935)
....++|||+||++.+++++|+.+|+.||.|..|+|+.++.+|+++|||||+|.+.++|.+||..|||..| +|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999988 899999
Q ss_pred EEeechh
Q 002335 292 LKVDQAT 298 (935)
Q Consensus 292 V~~a~~~ 298 (935)
|.|+...
T Consensus 90 v~~a~~~ 96 (106)
T 2dgp_A 90 VKPADSE 96 (106)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9998763
No 40
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5e-15 Score=136.99 Aligned_cols=84 Identities=20% Similarity=0.411 Sum_probs=79.2
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeecc-CCCCCCCceEEEEeCCHHHHHHHHHHh-CCceeCCeEEEE
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY-PSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELML 292 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d-~~tgk~kgfgFVeF~~~e~A~~Al~~L-ng~~i~gr~L~V 292 (935)
....++|||+||++.+++++|+.+|+.||.|..|.|+.+ ..+|+++|||||+|.+.++|.+||..| ||+.|+|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 355799999999999999999999999999999999998 679999999999999999999999999 999999999999
Q ss_pred Eeechh
Q 002335 293 KVDQAT 298 (935)
Q Consensus 293 ~~a~~~ 298 (935)
.|+...
T Consensus 92 ~~a~~~ 97 (107)
T 2cph_A 92 EWADSE 97 (107)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 998764
No 41
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.8e-15 Score=138.16 Aligned_cols=84 Identities=19% Similarity=0.327 Sum_probs=79.0
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcc--------eeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeC
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 286 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~--------~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~ 286 (935)
....++|||+||++.+++++|+.+|+.||.|. .|+|+.++.+|+++|||||+|.+.++|.+||..|||+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 35579999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CeEEEEEeechh
Q 002335 287 GQELMLKVDQAT 298 (935)
Q Consensus 287 gr~L~V~~a~~~ 298 (935)
|+.|.|.|+...
T Consensus 92 g~~l~V~~a~~~ 103 (113)
T 2cpe_A 92 GSKLKVSLARKK 103 (113)
T ss_dssp TEECEEECSSCC
T ss_pred CCEEEEEECCCC
Confidence 999999998763
No 42
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.57 E-value=4.4e-15 Score=134.36 Aligned_cols=81 Identities=22% Similarity=0.434 Sum_probs=76.5
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|+|+.+. +|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 457899999999999999999999999999999999986 5999999999999999999999999999999999999987
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 43
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.1e-15 Score=138.55 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=75.2
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||||||+.+++++|+.+|+.||.|.+|.|++++. |.++|||||+|.+.++|..||. +||+.|+|+.|.|.|.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 4468999999999999999999999999999999999975 9999999999999999999999 8999999999999976
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 44
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.57 E-value=4.6e-15 Score=142.95 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=79.1
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
.+.++|||+||++.+++++|+.+|+.||.|..|+|+.++.+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 754
No 45
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3.5e-15 Score=135.93 Aligned_cols=83 Identities=19% Similarity=0.402 Sum_probs=77.2
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCC---CCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS---NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 292 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~---tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V 292 (935)
.+.++|||+||++.+++++|+.+|+.||.|..|.++.+.. +|.++|||||+|.+.++|.+||..|||+.|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3578999999999999999999999999999999998865 5689999999999999999999999999999999999
Q ss_pred Eeechh
Q 002335 293 KVDQAT 298 (935)
Q Consensus 293 ~~a~~~ 298 (935)
.|+...
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 998763
No 46
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.57 E-value=6.9e-15 Score=136.17 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=76.7
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|+|+.+. +|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 457899999999999999999999999999999999997 9999999999999999999999999999999999999987
Q ss_pred c
Q 002335 296 Q 296 (935)
Q Consensus 296 ~ 296 (935)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 47
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=4.4e-15 Score=135.50 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=78.0
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcc-eeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeE----E
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE----L 290 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~-~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~----L 290 (935)
...++|||+||++.+++++|+.+|+.||.|. .|+|+.++.+|+++|||||+|.+.++|.+||..|||..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4578999999999999999999999999999 9999999889999999999999999999999999999999999 9
Q ss_pred EEEeech
Q 002335 291 MLKVDQA 297 (935)
Q Consensus 291 ~V~~a~~ 297 (935)
+|.|+..
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9998764
No 48
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.56 E-value=2.8e-15 Score=144.50 Aligned_cols=82 Identities=16% Similarity=0.359 Sum_probs=77.4
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcce--eeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCc----eeCCeE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQE 289 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~--vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~----~i~gr~ 289 (935)
...++||||||++.+++++|+.+|+.||.|.. |+|++++.+|+++|||||+|.+. +|.+||..|||+ .|+|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45689999999999999999999999999976 99999988999999999999999 999999999999 999999
Q ss_pred EEEEeechh
Q 002335 290 LMLKVDQAT 298 (935)
Q Consensus 290 L~V~~a~~~ 298 (935)
|.|.|+...
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999998763
No 49
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-15 Score=139.18 Aligned_cols=81 Identities=20% Similarity=0.421 Sum_probs=74.6
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccC-CCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~-~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
...++||||||++.+++++|+.+|+.|| |.+|.|+.++ .+|+++|||||+|.+.++|.+|| .|||+.|+|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4479999999999999999999999999 9999999987 58999999999999999999999 8999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8754
No 50
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.56 E-value=6.4e-15 Score=139.15 Aligned_cols=82 Identities=15% Similarity=0.319 Sum_probs=77.8
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|.|+.+. +|+++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999999996 9999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 753
No 51
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.56 E-value=3.7e-15 Score=128.92 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=72.2
Q ss_pred ceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 220 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 220 tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
+|||+|||+.+++++|+.+|+.||.|..|.++.++.+|+++|||||+|.+.++|.+|+. |||+.|+|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 8999999999999875
No 52
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.56 E-value=7.4e-15 Score=130.78 Aligned_cols=80 Identities=24% Similarity=0.380 Sum_probs=75.1
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|+++|||||+|.+.++|.+||. +++..|+|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3457899999999999999999999999999999999998899999999999999999999996 588999999999987
Q ss_pred e
Q 002335 295 D 295 (935)
Q Consensus 295 a 295 (935)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 53
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.56 E-value=6.1e-15 Score=140.76 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=78.9
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|..+|+.||.|..|.|+.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 44789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 100 ~~~ 102 (126)
T 3ex7_B 100 FVR 102 (126)
T ss_dssp EES
T ss_pred cCC
Confidence 753
No 54
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.56 E-value=5.7e-15 Score=131.45 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=75.9
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCC-CCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT-PKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk-~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
..++|||+||++.+++++|+.+|+.||.|..|.++.+..++. ++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999876665 8999999999999999999999999999999999998
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 55
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.3e-15 Score=137.08 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=75.8
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||+..+++++|+.+|+.||.|..|+++.+. ++++|||||+|.+.++|.+|+..|||+.|+|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999884 45899999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8653
No 56
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.1e-15 Score=136.87 Aligned_cols=82 Identities=29% Similarity=0.532 Sum_probs=78.7
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..++|||+||++.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999988
Q ss_pred hh
Q 002335 297 AT 298 (935)
Q Consensus 297 ~~ 298 (935)
..
T Consensus 87 ~~ 88 (104)
T 1p1t_A 87 SE 88 (104)
T ss_dssp CT
T ss_pred Cc
Confidence 75
No 57
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.56 E-value=8.6e-15 Score=135.05 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=77.5
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCC---eEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG---QELML 292 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~g---r~L~V 292 (935)
...++|||+||++.+++++|+.+|+.||.|..|.|+.++ +|+++|||||+|.+.++|.+||..|||..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457899999999999999999999999999999999996 89999999999999999999999999999998 99999
Q ss_pred Eeechh
Q 002335 293 KVDQAT 298 (935)
Q Consensus 293 ~~a~~~ 298 (935)
.|+...
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 998764
No 58
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=8e-15 Score=133.56 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=77.5
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+|||+.+++++|+.+|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 44689999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 59
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.56 E-value=6.9e-15 Score=131.30 Aligned_cols=79 Identities=24% Similarity=0.417 Sum_probs=75.8
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|+ .|||..|+|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999889999999999999999999999 8999999999999998765
No 60
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2e-14 Score=132.20 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=75.7
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||++.+++++|+.+|+.||.|..|+|+.+. +.++|||||+|.+.++|.+||..|||+.|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3557999999999999999999999999999999999984 33689999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 8764
No 61
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-14 Score=136.20 Aligned_cols=82 Identities=18% Similarity=0.290 Sum_probs=77.7
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||++.+++++|+.+|+.||.|..|+|+.++.+|+++|||||+|.+.++|.+||..||+ .|+|+.|.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 45579999999999999999999999999999999999988999999999999999999999999998 89999999999
Q ss_pred ech
Q 002335 295 DQA 297 (935)
Q Consensus 295 a~~ 297 (935)
+..
T Consensus 93 a~~ 95 (116)
T 2cqd_A 93 AYL 95 (116)
T ss_dssp STT
T ss_pred ccc
Confidence 865
No 62
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.55 E-value=1.9e-14 Score=139.42 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=76.3
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+|||..+++++|+.+|+.||.|..++++.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999875
No 63
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.55 E-value=6.4e-15 Score=133.27 Aligned_cols=81 Identities=21% Similarity=0.219 Sum_probs=76.1
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..++|||+|||+.+++++|+.+|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 35899999999999999999999999999999999988899999999999999999999999999999999999999875
Q ss_pred h
Q 002335 297 A 297 (935)
Q Consensus 297 ~ 297 (935)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 64
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.5e-15 Score=135.04 Aligned_cols=81 Identities=22% Similarity=0.445 Sum_probs=76.2
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCC-CCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN-GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~t-gk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
.+.++|||+||++.+++++|+.+|+.|| |..|.|+.++.+ |+++|||||+|.+.++|.+|| .|||+.|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3468999999999999999999999999 999999999877 999999999999999999999 8999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8763
No 65
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=8.7e-15 Score=135.14 Aligned_cols=83 Identities=19% Similarity=0.293 Sum_probs=78.3
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||++.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. ||+.|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 35579999999999999999999999999999999999988999999999999999999999998 99999999999998
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 7654
No 66
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=1.2e-14 Score=133.75 Aligned_cols=81 Identities=17% Similarity=0.316 Sum_probs=76.5
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.|| |..|.|+.++.+|+++|||||+|.+.++|.+|| .|||+.|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4478999999999999999999999997 999999999889999999999999999999999 89999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
No 67
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.54 E-value=4.7e-15 Score=137.40 Aligned_cols=81 Identities=14% Similarity=0.268 Sum_probs=74.8
Q ss_pred CCCcceeeccCCCCC------CHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCe-
Q 002335 216 KPQTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ- 288 (935)
Q Consensus 216 ~~~~tlfVgnLp~~v------te~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr- 288 (935)
...++|||||||+.+ ++++|+.+|+.||.|..|.|++ .+|+++|||||+|.+.++|.+||..|||+.|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 6789999999999999999883 6899999999999999999999999999999998
Q ss_pred EEEEEeechh
Q 002335 289 ELMLKVDQAT 298 (935)
Q Consensus 289 ~L~V~~a~~~ 298 (935)
.|.|.|+...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998764
No 68
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.54 E-value=1.9e-14 Score=137.11 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=78.0
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|+|+.+. +|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 457899999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 112 ~~~ 114 (124)
T 2kt5_A 112 ASQ 114 (124)
T ss_dssp CCT
T ss_pred CCC
Confidence 764
No 69
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=6.7e-15 Score=135.57 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=77.6
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHh-cCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCce-eCCeEEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-IDGQELMLK 293 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~-~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~-i~gr~L~V~ 293 (935)
.+.++|||+||++.+++++|+.+|+. ||.|..|.|+.+. +|+++|||||+|.+.++|.+||..|||.. |+|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45789999999999999999999999 9999999999997 99999999999999999999999999999 999999999
Q ss_pred eechh
Q 002335 294 VDQAT 298 (935)
Q Consensus 294 ~a~~~ 298 (935)
|+...
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 88653
No 70
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.3e-14 Score=137.77 Aligned_cols=82 Identities=12% Similarity=0.149 Sum_probs=74.5
Q ss_pred cceeeccC----CCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCC----HHH----HHHHHH--HhCCce
Q 002335 219 TKVYVGKI----APTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES----AEG----VLRALR--LLNKFN 284 (935)
Q Consensus 219 ~tlfVgnL----p~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~----~e~----A~~Al~--~Lng~~ 284 (935)
+.|||||| ++.+++..|+.+|+.||.|.+|.++.|+.||.++|||||+|.+ .+. |.+||. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788888 789999
Q ss_pred eCCeEEEEEeechhHH
Q 002335 285 IDGQELMLKVDQATRE 300 (935)
Q Consensus 285 i~gr~L~V~~a~~~~~ 300 (935)
|+|+.|+|.++.....
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999999888753
No 71
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.54 E-value=2.4e-14 Score=127.58 Aligned_cols=74 Identities=12% Similarity=0.235 Sum_probs=69.9
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
.+.-||||||++.+++++|+.+|..||.|.+++++. ++|||||+|.+.++|.+|+..|||..|+|+.|+|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 357799999999999999999999999999999976 47999999999999999999999999999999999984
No 72
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=133.56 Aligned_cols=81 Identities=25% Similarity=0.340 Sum_probs=77.1
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|.|+.+ +|.++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45789999999999999999999999999999999997 8999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 91 ~~~ 93 (103)
T 2d9p_A 91 QRK 93 (103)
T ss_dssp SSC
T ss_pred ccc
Confidence 763
No 73
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4.9e-15 Score=128.59 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=73.5
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|+..++ +.|+|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999998899999999999999999999999999 9999999999986
No 74
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.54 E-value=1.1e-14 Score=135.88 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=75.2
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||++.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..+ |+.|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 355789999999999999999999999999999999999889999999999999999999999975 5999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 101 a~~~ 104 (109)
T 2rs2_A 101 AFPR 104 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8754
No 75
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.4e-14 Score=134.07 Aligned_cols=82 Identities=17% Similarity=0.286 Sum_probs=77.2
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||++.+++++|+.+|+.||.|..|+|+.++ +|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3457899999999999999999999999999999999985 799999999999999999999999999999999999999
Q ss_pred ech
Q 002335 295 DQA 297 (935)
Q Consensus 295 a~~ 297 (935)
+..
T Consensus 91 a~~ 93 (114)
T 2do0_A 91 DER 93 (114)
T ss_dssp CSC
T ss_pred ccc
Confidence 765
No 76
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-15 Score=133.69 Aligned_cols=81 Identities=17% Similarity=0.289 Sum_probs=76.6
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|+|.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999998775
Q ss_pred c
Q 002335 296 Q 296 (935)
Q Consensus 296 ~ 296 (935)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 77
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=130.90 Aligned_cols=79 Identities=14% Similarity=0.206 Sum_probs=73.5
Q ss_pred CCcceeeccCCCCCCHHHHH----HHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002335 217 PQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 292 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~----~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V 292 (935)
..++|||+||++.+++++|+ .+|+.||.|.+|+|+.++.+ +|||||+|.+.++|.+||..|||..|+|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 46899999999999999999 99999999999999998644 889999999999999999999999999999999
Q ss_pred Eeechh
Q 002335 293 KVDQAT 298 (935)
Q Consensus 293 ~~a~~~ 298 (935)
.++...
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 998653
No 78
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3e-14 Score=131.08 Aligned_cols=82 Identities=18% Similarity=0.245 Sum_probs=76.8
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||++.+++++|+.+|+.||.|..|.|+.++.+|+++|||||+|.+.++|.+||. +++.|+|+.|.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3557899999999999999999999999999999999998899999999999999999999998 58899999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 90 a~~~ 93 (103)
T 2cqg_A 90 PNSK 93 (103)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 8764
No 79
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.4e-14 Score=130.70 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=75.7
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||++.+++++|+.+|+.||.|..|+|+.+. +.++|||||+|.+.++|.+||..|||+.|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457999999999999999999999999999999999984 34899999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 90 a~~~ 93 (103)
T 2cq3_A 90 ATAR 93 (103)
T ss_dssp CCSS
T ss_pred cccC
Confidence 8763
No 80
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=2.1e-14 Score=136.10 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=76.0
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCC---cceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 291 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~---V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~ 291 (935)
....++|||+||++.+++++|+.+|+.||. |..|+|+.++. |+++|||||+|.+.++|.+||. |||..|+|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999999999999999999999 89999999964 9999999999999999999999 999999999999
Q ss_pred EEeechh
Q 002335 292 LKVDQAT 298 (935)
Q Consensus 292 V~~a~~~ 298 (935)
|.++...
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9988653
No 81
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.53 E-value=2.9e-15 Score=134.27 Aligned_cols=79 Identities=25% Similarity=0.404 Sum_probs=74.1
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeechh
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 298 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~~ 298 (935)
++||||||+..+++++|+.+|+.||.|..|.++.++.+|+++|||||+|.+.+ |..|+..|||..|+|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999889999999999999999 99999999999999999999998765
No 82
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.53 E-value=1.2e-14 Score=130.66 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=76.0
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+|||+.+++++|+.+|+.||.|..|.++.+ +|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 44689999999999999999999999999999999884 8999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 84 ~~~ 86 (92)
T 2dgv_A 84 RNA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 83
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=4.8e-15 Score=135.90 Aligned_cols=81 Identities=21% Similarity=0.358 Sum_probs=74.9
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|.. .++.+..+|+++|||||+|.+.++|.+||. |||+.|+|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45789999999999999999999999999998 667776789999999999999999999999 9999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 84
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=138.55 Aligned_cols=84 Identities=12% Similarity=0.262 Sum_probs=74.8
Q ss_pred CCCcceeeccCCCCCCHHHHH----HHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 291 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~----~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~ 291 (935)
.+.++||||||++.+++++|+ .+|+.||.|..|.+.. +|+++|||||+|.+.++|..||..|||..|+|+.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 346899999999999998765 6999999999987753 788999999999999999999999999999999999
Q ss_pred EEeechhHHHH
Q 002335 292 LKVDQATREYL 302 (935)
Q Consensus 292 V~~a~~~~~~l 302 (935)
|.|+......+
T Consensus 104 V~~a~~~~~~~ 114 (127)
T 2a3j_A 104 ITFSETPQSQV 114 (127)
T ss_dssp EEECCCCCHHH
T ss_pred EEEccCcchhc
Confidence 99998764433
No 85
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.53 E-value=1.7e-14 Score=144.64 Aligned_cols=83 Identities=22% Similarity=0.235 Sum_probs=78.7
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++.+|..+|+.||.|..|.|+.++.+|+++|||||+|.+.++|..||..|||+.|+|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 44689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 150 ~~~ 152 (165)
T 1rk8_A 150 FVK 152 (165)
T ss_dssp EEC
T ss_pred cCC
Confidence 764
No 86
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.9e-14 Score=128.07 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=75.7
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+|||+.+++++|+.+|+.| .|..|.|+.+ .+|+++|||||+|.+.++|.+||. |||..|+|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 457899999999999999999999999 9999999999 799999999999999999999999 9999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 653
No 87
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.4e-14 Score=134.60 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=76.4
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCc-ceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V-~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
...++|||+|||+.+++++|+.+|+.||.| ..|+|+.++ +|+++|||||+|.+.++|.+||.. ||+.|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 446899999999999999999999999999 899999997 999999999999999999999997 99999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8764
No 88
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.52 E-value=2.2e-14 Score=142.23 Aligned_cols=82 Identities=21% Similarity=0.307 Sum_probs=78.7
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|..+|+.||.|..|.|+.++.+++++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 117 ~~ 118 (156)
T 1h2v_Z 117 AG 118 (156)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 89
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.6e-14 Score=134.13 Aligned_cols=83 Identities=17% Similarity=0.270 Sum_probs=77.0
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCC-cceeeee-ccCCCCCCCceEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRA-QYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELM 291 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~-V~~vki~-~d~~tgk~kgfgFVeF~~~e~A~~Al~~Ln--g~~i~gr~L~ 291 (935)
...++|||+||++.+++++|+.+|+.||. |..|.++ .+..+|+++|||||+|.+.++|..||..|| ++.|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 787889999999999999999999999996 5999999999
Q ss_pred EEeechh
Q 002335 292 LKVDQAT 298 (935)
Q Consensus 292 V~~a~~~ 298 (935)
|.|+...
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9998763
No 90
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.7e-14 Score=136.18 Aligned_cols=82 Identities=21% Similarity=0.247 Sum_probs=76.4
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+|||+.+++++|+.+|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||. |||+.|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 446899999999999999999999999999997777776899999999999999999999999 9999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 764
No 91
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.52 E-value=3.3e-14 Score=141.00 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=79.0
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|+|+.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 148 ~~~ 150 (158)
T 2kn4_A 148 RYG 150 (158)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 92
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=135.79 Aligned_cols=81 Identities=21% Similarity=0.331 Sum_probs=77.1
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..++|||+||++.+++++|+.+|+.||.|..|.|+.++.+|+++|||||+|.+.++|.+||.. ||+.|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 468999999999999999999999999999999999988999999999999999999999997 9999999999999987
Q ss_pred hh
Q 002335 297 AT 298 (935)
Q Consensus 297 ~~ 298 (935)
..
T Consensus 105 ~~ 106 (116)
T 1x4b_A 105 AR 106 (116)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 93
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.52 E-value=1.6e-14 Score=137.47 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=76.4
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..++|||+||++.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|| .|||+.|+|+.|.|.|+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3689999999999999999999999999999999999889999999999999999999999 799999999999999976
Q ss_pred h
Q 002335 297 A 297 (935)
Q Consensus 297 ~ 297 (935)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 94
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.9e-14 Score=130.52 Aligned_cols=80 Identities=19% Similarity=0.356 Sum_probs=73.9
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|.|.. ++.++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 4578999999999999999999999999999999865 4668999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 97 ~~~ 99 (109)
T 1x4a_A 97 RSG 99 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 753
No 95
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2e-14 Score=133.24 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=70.2
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLK 293 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Ln--g~~i~gr~L~V~ 293 (935)
.+.++|||||||+.+++++|+.+|+.||.|.+|+|+++ +|||||+|.+.++|..||..|+ |..|+|+.|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34789999999999999999999999999999999976 5999999999999999999886 478999999999
Q ss_pred eech
Q 002335 294 VDQA 297 (935)
Q Consensus 294 ~a~~ 297 (935)
|+..
T Consensus 88 ~A~~ 91 (105)
T 1sjq_A 88 FSNH 91 (105)
T ss_dssp CCSS
T ss_pred EcCC
Confidence 9865
No 96
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.6e-14 Score=135.09 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=76.0
Q ss_pred CCCcceeeccCCCCCCHHHHH---HHHHhcCCcceeeeeccCCCC---CCCceEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 002335 216 KPQTKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPSNG---TPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 289 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~---~lFs~~G~V~~vki~~d~~tg---k~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~ 289 (935)
...++|||+|||+.+++++|. .+|+.||.|..|.|+.+..++ +++|||||+|.+.++|.+||..|||+.|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346899999999999999999 999999999999999886544 55699999999999999999999999999999
Q ss_pred EEEEeechh
Q 002335 290 LMLKVDQAT 298 (935)
Q Consensus 290 L~V~~a~~~ 298 (935)
|.|.|+...
T Consensus 93 l~V~~a~~k 101 (111)
T 2cpi_A 93 LKASLGTTK 101 (111)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccc
Confidence 999998764
No 97
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.51 E-value=1.2e-14 Score=125.53 Aligned_cols=75 Identities=21% Similarity=0.345 Sum_probs=71.8
Q ss_pred ceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 220 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 220 tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
+|||+|||+.+++++|+.+|+.||.|..|.++.++.+|+++|||||+|.+.++|.+||.. +|+.|+|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999988999999999999999999999995 999999999999875
No 98
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.51 E-value=1.6e-14 Score=131.10 Aligned_cols=83 Identities=13% Similarity=0.306 Sum_probs=75.6
Q ss_pred CCCCcceeeccCCCCCCHHHHH----HHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 002335 215 EKPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 290 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~----~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L 290 (935)
..+.++|||+||++.+++++|+ .+|+.||.|..|.++. +|+++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3457899999999999999999 9999999999999874 57888999999999999999999999999999999
Q ss_pred EEEeechhHH
Q 002335 291 MLKVDQATRE 300 (935)
Q Consensus 291 ~V~~a~~~~~ 300 (935)
.|.|+.....
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999887543
No 99
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.51 E-value=3.6e-14 Score=133.13 Aligned_cols=82 Identities=13% Similarity=0.268 Sum_probs=75.5
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+|||+.+++++|+.+|+.||.|..|.++.+ +.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 34689999999999999999999999999999999865 566899999999999999999999999999999999999
Q ss_pred chhHH
Q 002335 296 QATRE 300 (935)
Q Consensus 296 ~~~~~ 300 (935)
.....
T Consensus 83 ~~~~~ 87 (115)
T 3lqv_A 83 NANRA 87 (115)
T ss_dssp CHHHH
T ss_pred cCChh
Confidence 87543
No 100
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.50 E-value=1.4e-14 Score=153.20 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=77.6
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcC--CcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G--~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
..++|||+||++.+++++|+.+|+.|| .|..|+|++++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467999999999999999999999999 999999999989999999999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8764
No 101
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-14 Score=128.11 Aligned_cols=72 Identities=15% Similarity=0.335 Sum_probs=67.7
Q ss_pred cceeeccCCCCC------CHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCe-EEE
Q 002335 219 TKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-ELM 291 (935)
Q Consensus 219 ~tlfVgnLp~~v------te~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr-~L~ 291 (935)
++|||||||..+ ++++|+.+|+.||.|.+|.++. .+|+++|||||+|.+.++|.+||..|||..|+|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 6699999999999999999883 5899999999999999999999999999999999 887
Q ss_pred E
Q 002335 292 L 292 (935)
Q Consensus 292 V 292 (935)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 102
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.49 E-value=5.1e-14 Score=129.31 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=70.7
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN--IDGQELMLK 293 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~--i~gr~L~V~ 293 (935)
.+.++|||+|||+.+++++|+.+|+.||.|.+|.++++ +|||||+|.+.++|.+||..|||.. |+|+.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 45789999999999999999999999999999999864 5999999999999999999999875 889999999
Q ss_pred eechh
Q 002335 294 VDQAT 298 (935)
Q Consensus 294 ~a~~~ 298 (935)
|+...
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 98753
No 103
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.49 E-value=2.1e-14 Score=139.44 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=78.7
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|.|+.++.+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 44689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 104
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.49 E-value=2.7e-14 Score=132.76 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=75.8
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCC---cceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 292 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~---V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V 292 (935)
...++|||+||++.+++++|+.+|+.||. |..|.|+.++. |+++|||||+|.+.++|.+||. |||..|+|+.|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 45789999999999999999999999998 89999999965 9999999999999999999999 9999999999999
Q ss_pred Eeechh
Q 002335 293 KVDQAT 298 (935)
Q Consensus 293 ~~a~~~ 298 (935)
.++...
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 988753
No 105
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5e-14 Score=132.06 Aligned_cols=83 Identities=19% Similarity=0.319 Sum_probs=74.2
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
.+.++|||+||++.+++++|+.+|+.||.|..+.+..+..+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 35689999999999999999999999999966554444348999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 106
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=2.4e-14 Score=132.29 Aligned_cols=77 Identities=12% Similarity=0.104 Sum_probs=70.6
Q ss_pred CCCcceeeccCCC-CCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEE
Q 002335 216 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELML 292 (935)
Q Consensus 216 ~~~~tlfVgnLp~-~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng--~~i~gr~L~V 292 (935)
.+.++|||+|||+ .+++++|+.+|+.||.|.+|.|+++ +|||||+|.+.++|..||..||+ ..|+|+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 9999999999999999999999876 48999999999999999999886 4599999999
Q ss_pred Eeechh
Q 002335 293 KVDQAT 298 (935)
Q Consensus 293 ~~a~~~ 298 (935)
.|+...
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 998864
No 107
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.48 E-value=5.7e-14 Score=136.55 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=75.8
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCC---cceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 292 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~---V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V 292 (935)
...++|||+|||+.+++++|+.+|+.||. |..|+|++++. |+++|||||+|.+.++|.+||. |||..|+|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 45789999999999999999999999999 89999999965 9999999999999999999999 9999999999999
Q ss_pred Eeechh
Q 002335 293 KVDQAT 298 (935)
Q Consensus 293 ~~a~~~ 298 (935)
.++...
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 987653
No 108
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.2e-13 Score=129.28 Aligned_cols=82 Identities=26% Similarity=0.356 Sum_probs=76.5
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCcee--------C
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI--------D 286 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i--------~ 286 (935)
....++|||+||++.+++++|+.+|+.||.|..|+|+.+. +|.++|||||+|.+.++|..||..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3457899999999999999999999999999999999997 999999999999999999999999999999 5
Q ss_pred CeEEEEEeech
Q 002335 287 GQELMLKVDQA 297 (935)
Q Consensus 287 gr~L~V~~a~~ 297 (935)
++.|.|.|+..
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 77899999864
No 109
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=5.7e-14 Score=128.68 Aligned_cols=75 Identities=20% Similarity=0.347 Sum_probs=70.2
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..++||||||+..+++++|+.+|+.||.|.+|++++ ++|||||+|.+.++|..||..|||+.|+|+.|.|.|+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 468999999999999999999999999999999874 46999999999999999999999999999999999876
Q ss_pred h
Q 002335 297 A 297 (935)
Q Consensus 297 ~ 297 (935)
.
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 110
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.1e-13 Score=127.60 Aligned_cols=77 Identities=13% Similarity=0.171 Sum_probs=70.5
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELMLK 293 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~L--ng~~i~gr~L~V~ 293 (935)
.+.++|||+||++.+++++|+.+|+.||.|..|.++.+ +|||||+|.+.++|..||..| ++..|+|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 45789999999999999999999999999999998875 699999999999999999977 5788999999999
Q ss_pred eechh
Q 002335 294 VDQAT 298 (935)
Q Consensus 294 ~a~~~ 298 (935)
|+...
T Consensus 87 ~a~~~ 91 (101)
T 2cq1_A 87 YSNHK 91 (101)
T ss_dssp ECSCS
T ss_pred EcCcc
Confidence 98753
No 111
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=9.3e-14 Score=127.27 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=73.1
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||++.+++++|+.+|+.||.| +++.+ .+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3457999999999999999999999999987 56666 6899999999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8763
No 112
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.47 E-value=9.6e-14 Score=130.23 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=71.1
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcC-CcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G-~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
..++|||+|||+.+++++|+.+|+.|| .|..+.|+.+ +++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 468999999999999999999999999 8999988643 47899999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 653
No 113
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=7.2e-14 Score=129.15 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=74.4
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcce-eeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~-vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
...++|||+|||+.+++++|+.+|+.||.|.. |.|+.+ .+|+++|||||+|.+.++|.+||.. ||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 44689999999999999999999999999997 888888 7999999999999999999999997 99999999999987
Q ss_pred ech
Q 002335 295 DQA 297 (935)
Q Consensus 295 a~~ 297 (935)
+..
T Consensus 91 ~~~ 93 (104)
T 1wg5_A 91 SSR 93 (104)
T ss_dssp ECT
T ss_pred CCH
Confidence 654
No 114
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.3e-13 Score=128.32 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=71.0
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCC-----eEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-----QEL 290 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~g-----r~L 290 (935)
...++|||+||++.+++++|+.+|+.||.|..|.|+.+ |||||+|.+.++|.+||..|||+.|+| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 34689999999999999999999999999999999886 899999999999999999999999999 999
Q ss_pred EEEeech
Q 002335 291 MLKVDQA 297 (935)
Q Consensus 291 ~V~~a~~ 297 (935)
.|.++..
T Consensus 86 ~V~~a~~ 92 (108)
T 1x4c_A 86 RVKVDGP 92 (108)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 9999876
No 115
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.47 E-value=2.6e-14 Score=139.59 Aligned_cols=83 Identities=16% Similarity=0.248 Sum_probs=73.7
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceee--eecc---CCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWK--RAQY---PSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 290 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vk--i~~d---~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L 290 (935)
.+.++||||||++.+++++|+.+|+.||.|..|. ++.+ ..+|+++|||||+|.+.++|.+||..|||+.|+|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4568999999999999999999999999998862 2222 2589999999999999999999999999999999999
Q ss_pred EEEeechh
Q 002335 291 MLKVDQAT 298 (935)
Q Consensus 291 ~V~~a~~~ 298 (935)
.|.|+...
T Consensus 123 ~V~~a~~~ 130 (143)
T 3egn_A 123 VVQFARSA 130 (143)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999764
No 116
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.47 E-value=1.4e-13 Score=125.66 Aligned_cols=75 Identities=16% Similarity=0.387 Sum_probs=69.9
Q ss_pred CCCcceeeccCCC-CCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 216 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 216 ~~~~tlfVgnLp~-~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
.+.++||||||++ .+++++|+.+|+.||.|..|.+. +|||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4578999999998 99999999999999999999883 58999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8653
No 117
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=122.00 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=70.8
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEE
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLK 293 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~L-ng~~i~gr~L~V~ 293 (935)
....++|||+||+..+++++|+.+|+.||.|..|.++++ +|||||+|.+.++|..|+..| ||+.|+|+.|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345789999999999999999999999999999999875 599999999999999999988 9999999999999
Q ss_pred eec
Q 002335 294 VDQ 296 (935)
Q Consensus 294 ~a~ 296 (935)
|+.
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 863
No 118
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-13 Score=128.55 Aligned_cols=78 Identities=19% Similarity=0.314 Sum_probs=72.8
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||+..+++++|+.+|+.||.|..|.++.+ +|||||+|.+.++|.+||..|||+.|+|+.|.|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345789999999999999999999999999999999886 69999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 96 a~~~ 99 (109)
T 1x4g_A 96 GKES 99 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 119
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=124.63 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=71.0
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|. +.++. ++++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3468999999999999999999999999997 67665 467899999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 120
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.46 E-value=1.2e-13 Score=128.71 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=71.2
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++||||||++.+++++|+.+|+.||.|..|.++ +|||||+|.+.++|.+|+..|||..|+|+.|.|.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3557899999999999999999999999999999987 48999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 100 a~~~ 103 (108)
T 2jvo_A 100 SKLP 103 (108)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 8764
No 121
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.46 E-value=1.3e-13 Score=143.74 Aligned_cols=83 Identities=19% Similarity=0.337 Sum_probs=78.0
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
.+.++|||||||+.+++++|+.+|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+||..|||..++|+.|.|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34689999999999999999999999999999999999899999999999999999999999999999999999999988
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 122
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=125.96 Aligned_cols=80 Identities=20% Similarity=0.362 Sum_probs=73.6
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.| ..|.++.+..+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 457999999999999999999999977 36788888789999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 90 ~~~ 92 (102)
T 2fc8_A 90 KPK 92 (102)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
No 123
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=8.4e-14 Score=132.06 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=70.8
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLK 293 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Ln--g~~i~gr~L~V~ 293 (935)
.+.++|||+||++.+++++|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|.+||..|+ +..|+|+.|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 44789999999999999999999999999999999986 5999999999999999999887 468999999999
Q ss_pred eechh
Q 002335 294 VDQAT 298 (935)
Q Consensus 294 ~a~~~ 298 (935)
|+...
T Consensus 103 ~a~~k 107 (119)
T 2ad9_A 103 FSNHK 107 (119)
T ss_dssp ECSSS
T ss_pred EccCC
Confidence 98653
No 124
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=2.2e-13 Score=123.88 Aligned_cols=77 Identities=16% Similarity=0.385 Sum_probs=71.4
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLK 293 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~--gr~L~V~ 293 (935)
.+.++|||+||++.+++++|+.+|+.||.|..|.++.+ +|||||+|.+.++|.+||..|||+.|+ |+.|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 34689999999999999999999999999999998764 689999999999999999999999999 9999999
Q ss_pred eechh
Q 002335 294 VDQAT 298 (935)
Q Consensus 294 ~a~~~ 298 (935)
|+...
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98753
No 125
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=128.99 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=72.7
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..++|||+|||+.+++++|+.+|+.| .|..|.|+.++ +|+++|||||+|.+.++|.+|| .|||..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35799999999999999999999999 89999999995 5999999999999999999999 589999999999998776
Q ss_pred h
Q 002335 297 A 297 (935)
Q Consensus 297 ~ 297 (935)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 5
No 126
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5.5e-14 Score=129.74 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=72.8
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+|||+.+++++|+.+|+.|| ++.|+|+.++ +|+++|||||+|.+.++|.+||. +|+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3468999999999999999999999999 5599999996 99999999999999999999995 7999999999999876
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 90 ~~ 91 (102)
T 1wez_A 90 ST 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 127
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=123.30 Aligned_cols=75 Identities=19% Similarity=0.395 Sum_probs=70.3
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|.++ +|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 457899999999999999999999999999999987 489999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 78 ~~~ 80 (90)
T 2dnq_A 78 KNK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 763
No 128
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.45 E-value=1.5e-13 Score=139.55 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=78.2
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 457899999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 765
No 129
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=3e-13 Score=121.81 Aligned_cols=76 Identities=24% Similarity=0.419 Sum_probs=70.7
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||++.+++++|+.+|+.||.|..|.+++ +||||+|.+.++|.+||..|||+.|+|+.|.|.|
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34579999999999999999999999999999999874 4999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 79 a~~~ 82 (92)
T 2dgt_A 79 STSR 82 (92)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 8763
No 130
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.16 E-value=8.6e-15 Score=137.83 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=78.2
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcce--------eeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCC
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 287 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~--------vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~g 287 (935)
.+.++|||+||++.+++++|+.+|+.||.|.. |.|+.++.+|+++|||||+|.+.++|.+||..|||+.|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999999 8999988899999999999999999999999999999999
Q ss_pred eEEEEEeechh
Q 002335 288 QELMLKVDQAT 298 (935)
Q Consensus 288 r~L~V~~a~~~ 298 (935)
+.|.|.|+...
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999987654
No 131
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.44 E-value=6e-14 Score=128.75 Aligned_cols=80 Identities=26% Similarity=0.392 Sum_probs=75.9
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..++|||+||++.+++++|+.+|+.||.|..|.++.++ +|+++|||||+|.+.++|.+||. +|+.|+|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 46899999999999999999999999999999999997 99999999999999999999999 9999999999999988
Q ss_pred hhH
Q 002335 297 ATR 299 (935)
Q Consensus 297 ~~~ 299 (935)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 753
No 132
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=126.85 Aligned_cols=75 Identities=27% Similarity=0.400 Sum_probs=71.1
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeechh
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 298 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~~ 298 (935)
++|||+|||+.+++++|+.+|+.||.|..|.++.+ ++|||||+|.+.++|.+||..|||..|+|+.|.|.|+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999886 6799999999999999999999999999999999998764
No 133
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.4e-13 Score=127.69 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=69.4
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELMLK 293 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng--~~i~gr~L~V~ 293 (935)
.+.++|||+||++.+++++|+.+|+.||.|..|.++++ +|||||+|.+.++|..||..|++ +.|+|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45689999999999999999999999999999998874 59999999999999999998865 45999999999
Q ss_pred eech
Q 002335 294 VDQA 297 (935)
Q Consensus 294 ~a~~ 297 (935)
|+..
T Consensus 87 ~a~~ 90 (104)
T 1wex_A 87 YSTS 90 (104)
T ss_dssp ECSS
T ss_pred EccC
Confidence 9875
No 134
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.6e-13 Score=128.68 Aligned_cols=78 Identities=13% Similarity=0.217 Sum_probs=70.4
Q ss_pred CCCCcceeeccCCCC-CCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 002335 215 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELM 291 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~-vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Ln--g~~i~gr~L~ 291 (935)
..+.++|||+||++. +++++|+.+|+.||.|.+|.|++. +|||||+|.+.++|..||..|| +..|+|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345789999999998 999999999999999999999764 6999999999999999999886 4669999999
Q ss_pred EEeechh
Q 002335 292 LKVDQAT 298 (935)
Q Consensus 292 V~~a~~~ 298 (935)
|.|+...
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9998764
No 135
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=9.5e-14 Score=125.89 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=71.8
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+||++.+++++|+.+|+.||.|..+ ..+|+++|||||+|.+.++|..||..|||+.|+|+.|.|.|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3457899999999999999999999999988766 25789999999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 88 a~~~ 91 (96)
T 1fjc_A 88 TGEK 91 (96)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 8653
No 136
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.7e-13 Score=128.27 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=70.4
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..++|||+||++.+++++|+.+|+.||.|..|.|+. .+|||||+|.+.++|..||..|||+.|+|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999999875 46899999999999999999999999999999999987
Q ss_pred h
Q 002335 297 A 297 (935)
Q Consensus 297 ~ 297 (935)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 5
No 137
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=2.3e-13 Score=124.20 Aligned_cols=77 Identities=18% Similarity=0.335 Sum_probs=71.9
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
.+.++|||+||++.+++++|+.+|+.||.|..|.++++ +|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 45789999999999999999999999999999999865 599999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 87 ~~~ 89 (99)
T 2cpj_A 87 CHS 89 (99)
T ss_dssp SCC
T ss_pred CCC
Confidence 763
No 138
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=4.1e-13 Score=120.36 Aligned_cols=75 Identities=17% Similarity=0.316 Sum_probs=70.1
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|.+++ +||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4578999999999999999999999999999999874 49999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 139
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.42 E-value=4.5e-13 Score=123.32 Aligned_cols=75 Identities=15% Similarity=0.399 Sum_probs=70.0
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|.+++ +||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 3468999999999999999999999999999999874 59999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 81 ~~~ 83 (103)
T 2dgu_A 81 KPP 83 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 140
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.41 E-value=3e-12 Score=138.47 Aligned_cols=77 Identities=12% Similarity=0.211 Sum_probs=71.6
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 293 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~-gr~L~V~ 293 (935)
..+.++|||+||+..+++++|+.+|+.||.|..|+++.++ +|||||+|.+.++|.+||..|||+.|+ |+.|+|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3457899999999999999999999999999999998763 589999999999999999999999999 9999999
Q ss_pred eec
Q 002335 294 VDQ 296 (935)
Q Consensus 294 ~a~ 296 (935)
|+.
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 975
No 141
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.41 E-value=3.8e-13 Score=132.43 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=73.4
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++||||||++.+++++|+.+|+.||.|.+|+++.+ ++|||||+|.+.++|..||..|||+.|+|+.|.|.|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999876 579999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8754
No 142
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=4.4e-13 Score=121.50 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=71.2
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCccee-eeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~v-ki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
...++|||+||++.+++++|+.+|+.||.|..| .++.++.+| +|||+|.+.++|..||..|||+.|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346899999999999999999999999999999 477775444 399999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8764
No 143
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=5.2e-13 Score=120.33 Aligned_cols=76 Identities=14% Similarity=0.328 Sum_probs=67.8
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCC-cceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK-FNIDGQELMLK 293 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~-V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng-~~i~gr~L~V~ 293 (935)
...++|||+||++.+++++|+.+|+.||. |..+.+. ++|||||+|.+.++|.+||..||| +.|+|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 44689999999999999999999999999 5555553 259999999999999999999999 99999999999
Q ss_pred eechh
Q 002335 294 VDQAT 298 (935)
Q Consensus 294 ~a~~~ 298 (935)
|+...
T Consensus 79 ~a~~~ 83 (93)
T 2cqh_A 79 YSVSK 83 (93)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 98753
No 144
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=3e-13 Score=122.92 Aligned_cols=75 Identities=17% Similarity=0.421 Sum_probs=69.8
Q ss_pred CCCcceeeccCCC-CCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 216 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 216 ~~~~tlfVgnLp~-~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
.+.++|||+||++ .+++++|+.+|+.||.|..|.+. +|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4578999999999 99999999999999999999984 48999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 80 a~~~ 83 (96)
T 2kvi_A 80 SSSN 83 (96)
T ss_dssp EECC
T ss_pred cCcC
Confidence 8764
No 145
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.40 E-value=6.4e-13 Score=131.07 Aligned_cols=81 Identities=17% Similarity=0.322 Sum_probs=77.6
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||+..+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred c
Q 002335 296 Q 296 (935)
Q Consensus 296 ~ 296 (935)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 146
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.40 E-value=5.7e-13 Score=131.57 Aligned_cols=81 Identities=16% Similarity=0.322 Sum_probs=77.5
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
.++|||+|||..+++++|+.+|+.||.|..+.++.++.+|+++|||||+|.+.++|..|+..|||..|+|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred h
Q 002335 298 T 298 (935)
Q Consensus 298 ~ 298 (935)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 147
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=6.6e-13 Score=121.21 Aligned_cols=75 Identities=17% Similarity=0.383 Sum_probs=69.3
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhc--CCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 293 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~--G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~ 293 (935)
...++|||+||++.+++++|+.+|+.| |.|..|++. +|||||+|.+.++|.+||..|||+.|+|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 457899999999999999999999999 999998875 3799999999999999999999999999999999
Q ss_pred eechh
Q 002335 294 VDQAT 298 (935)
Q Consensus 294 ~a~~~ 298 (935)
|+...
T Consensus 85 ~a~~~ 89 (99)
T 2cpd_A 85 LAKPV 89 (99)
T ss_dssp CCCCC
T ss_pred ECCCC
Confidence 98763
No 148
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.39 E-value=1e-12 Score=122.41 Aligned_cols=73 Identities=18% Similarity=0.309 Sum_probs=68.7
Q ss_pred CCcceeeccCCCC-CCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 217 PQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 217 ~~~tlfVgnLp~~-vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
..++|||+||++. +++++|+.+|+.||.|..|.+ ++|||||+|.+.++|..||..|||+.|+|+.|.|.|+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4689999999999 999999999999999999998 3589999999999999999999999999999999998
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 149
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.39 E-value=5.4e-13 Score=132.20 Aligned_cols=81 Identities=16% Similarity=0.343 Sum_probs=77.6
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
+.++|||+|||..+++++|+.+|+.||.|.+|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 002335 297 A 297 (935)
Q Consensus 297 ~ 297 (935)
.
T Consensus 82 ~ 82 (168)
T 1b7f_A 82 P 82 (168)
T ss_dssp C
T ss_pred C
Confidence 5
No 150
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.9e-13 Score=121.62 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=67.9
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..++||||||++.+++++|+.+|+.||.|..| +.++.+|+ ||||+|.+.++|.+||. |||+.|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 46799999999999999999999999999987 55555665 99999999999999999 99999999999998765
Q ss_pred h
Q 002335 297 A 297 (935)
Q Consensus 297 ~ 297 (935)
.
T Consensus 81 ~ 81 (94)
T 2e5g_A 81 Q 81 (94)
T ss_dssp C
T ss_pred c
Confidence 4
No 151
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=3.5e-13 Score=128.77 Aligned_cols=80 Identities=23% Similarity=0.219 Sum_probs=73.3
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCc----ceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV----KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 291 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V----~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~ 291 (935)
...++|||+|||+.+++++|+.+|+.||.| ..|.|+.+ .+|+++|||||+|.+.++|.+||.. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 446899999999999999999999999875 68999998 5999999999999999999999996 99999999999
Q ss_pred EEeech
Q 002335 292 LKVDQA 297 (935)
Q Consensus 292 V~~a~~ 297 (935)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 987754
No 152
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.38 E-value=7.2e-13 Score=118.43 Aligned_cols=74 Identities=15% Similarity=0.302 Sum_probs=69.1
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..++|||+|||+.+++++|+.+|+.| .|..+++. +++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999885 467999999999999999999999999999999999976
Q ss_pred h
Q 002335 297 A 297 (935)
Q Consensus 297 ~ 297 (935)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 153
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=8.3e-13 Score=124.13 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=69.5
Q ss_pred CCCcceee--ccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCcee-----CCe
Q 002335 216 KPQTKVYV--GKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI-----DGQ 288 (935)
Q Consensus 216 ~~~~tlfV--gnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i-----~gr 288 (935)
.+.++||| |||++.+++++|+.+|+.||.|..|.++.+ +|||||+|.+.++|.+|+..|||..| +|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45688999 889999999999999999999999988653 58999999999999999999999998 689
Q ss_pred EEEEEeechh
Q 002335 289 ELMLKVDQAT 298 (935)
Q Consensus 289 ~L~V~~a~~~ 298 (935)
.|.|+|+...
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999997653
No 154
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.37 E-value=6.8e-13 Score=132.16 Aligned_cols=78 Identities=22% Similarity=0.460 Sum_probs=75.9
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
.++|||+|||..+++++|+.+|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 689999999999999999999999999999999999889999999999999999999999999999999999999986
No 155
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.37 E-value=2e-13 Score=133.21 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=73.1
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+|||+.+++++|+.+|+.|| |..|.|+.++ +|+++|||||+|.+.++|.+|| .+|+..|+|+.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3468999999999999999999999999 7799999996 5999999999999999999999 68999999999999877
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 121 ~~~ 123 (139)
T 2hgn_A 121 STT 123 (139)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 156
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.37 E-value=1e-12 Score=136.85 Aligned_cols=79 Identities=18% Similarity=0.365 Sum_probs=74.5
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
.++|||+||++.+++++|+.+|+.||.|..|+|+++. +.++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+..
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 5789999999999999999999999999999999983 55799999999999999999999999999999999999987
Q ss_pred h
Q 002335 298 T 298 (935)
Q Consensus 298 ~ 298 (935)
.
T Consensus 181 ~ 181 (213)
T 4f02_A 181 R 181 (213)
T ss_dssp H
T ss_pred C
Confidence 5
No 157
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.37 E-value=4.8e-13 Score=128.25 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=71.7
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcc--eeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 293 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~--~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~ 293 (935)
...++|||+|||+.+++++|+.+|+.| .|. .|+|+.++. |+++|||||+|.+.++|.+||.. ++..|+|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 346789999999999999999999999 576 899999965 99999999999999999999984 8899999999998
Q ss_pred eech
Q 002335 294 VDQA 297 (935)
Q Consensus 294 ~a~~ 297 (935)
++..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 7754
No 158
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.5e-12 Score=118.42 Aligned_cols=75 Identities=15% Similarity=0.281 Sum_probs=68.6
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+|| .+++++|+.+|+.||.|..|.|. +++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34689999996 89999999999999999999985 45699999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 85 ~~~ 87 (97)
T 1x5p_A 85 RKQ 87 (97)
T ss_dssp SSC
T ss_pred CCC
Confidence 763
No 159
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=9e-13 Score=123.79 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=69.6
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCC---CCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 292 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~t---gk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V 292 (935)
...++||||||++.+++++|+.+|+.||.|. +.++.+..+ |+++|||||+|.+.++|.+||..|+ .++|+.|.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3468999999999999999999999999999 888887766 8999999999999999999999985 488888888
Q ss_pred Eeec
Q 002335 293 KVDQ 296 (935)
Q Consensus 293 ~~a~ 296 (935)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6543
No 160
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.36 E-value=6.9e-13 Score=131.50 Aligned_cols=81 Identities=21% Similarity=0.377 Sum_probs=76.7
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..++|||+||++.+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+. +||..|+|+.|.|.|+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35789999999999999999999999999999999998899999999999999999999998 89999999999999987
Q ss_pred hh
Q 002335 297 AT 298 (935)
Q Consensus 297 ~~ 298 (935)
.+
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 161
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.36 E-value=1e-12 Score=135.93 Aligned_cols=83 Identities=29% Similarity=0.492 Sum_probs=78.7
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||+..+++++|+.+|+.||.|..|+++.+..+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 753
No 162
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.36 E-value=1.4e-12 Score=117.13 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=62.8
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN--IDGQELMLK 293 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~--i~gr~L~V~ 293 (935)
.+.++|||||||+.+++++|+.+|+.||.|.+|+|+++ ++|||||+|.+.++|.+ |+|.. ++|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 45789999999999999999999999999999999874 68999999999999883 45554 569999999
Q ss_pred eechh
Q 002335 294 VDQAT 298 (935)
Q Consensus 294 ~a~~~ 298 (935)
++...
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 98765
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.36 E-value=1.1e-12 Score=133.55 Aligned_cols=82 Identities=20% Similarity=0.355 Sum_probs=77.1
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+|||+.+++++|+.+|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+||.. +|+.|+|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4578999999999999999999999999999999999988999999999999999999999986 999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 90 ~~~ 92 (196)
T 1l3k_A 90 VSR 92 (196)
T ss_dssp CC-
T ss_pred cCc
Confidence 764
No 164
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.35 E-value=8.2e-13 Score=124.39 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=66.0
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeE-----EE
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE-----LM 291 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~-----L~ 291 (935)
..++|||+||++.+++++|+.+|+.||.|..|.|+.+ |||||+|.+.++|..||..|||+.|+|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3689999999999999999999999999999999876 89999999999999999999999999998 66
Q ss_pred EEeech
Q 002335 292 LKVDQA 297 (935)
Q Consensus 292 V~~a~~ 297 (935)
|..+..
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 655443
No 165
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.8e-12 Score=116.65 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=64.2
Q ss_pred Ccc-eeeccCCCCCCHHH----HHHHHHhc-CCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002335 218 QTK-VYVGKIAPTADSDF----VLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 291 (935)
Q Consensus 218 ~~t-lfVgnLp~~vte~~----L~~lFs~~-G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~ 291 (935)
..| |||+||++.++.+. |..+|+.| |.|.+| +| |||||.|.+.++|.+|++.|||..|.|+.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 444 99999999999987 55899999 599988 33 9999999999999999999999999999999
Q ss_pred EEeechh
Q 002335 292 LKVDQAT 298 (935)
Q Consensus 292 V~~a~~~ 298 (935)
|.++...
T Consensus 78 v~~A~~~ 84 (96)
T 2diu_A 78 VSFTPKN 84 (96)
T ss_dssp EESSCCS
T ss_pred EEecCCC
Confidence 9998875
No 166
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.34 E-value=2e-12 Score=128.87 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=69.9
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEee
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKVD 295 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~g--r~L~V~~a 295 (935)
..+|||+||++.+++++|+.+|+.||.|.+|.|..+ ..+|||||+|.+.++|..|+..|||..|.| +.|+|.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 567999999999999999999999999999998754 256899999999999999999999999965 99999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 764
No 167
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.33 E-value=1.6e-12 Score=132.51 Aligned_cols=83 Identities=20% Similarity=0.433 Sum_probs=78.8
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||++.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 168
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.33 E-value=2e-12 Score=127.58 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=73.4
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
++|||+|||..+++++|+.+|+.||.|.++.++.++ +|+++|||||+|.+.++|..|+..|||..|+|+.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 589999999999999999999999999999999985 688999999999999999999999999999999999998754
No 169
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.33 E-value=2e-12 Score=131.65 Aligned_cols=81 Identities=15% Similarity=0.343 Sum_probs=75.8
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..++|||+||++.+++++|+.+|+.||.|..|.++.+..+|+++|||||+|.+.++|.+||.. +|+.|+|+.|.|.|+.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 458999999999999999999999999999999999988999999999999999999999986 8999999999999998
Q ss_pred hh
Q 002335 297 AT 298 (935)
Q Consensus 297 ~~ 298 (935)
..
T Consensus 182 ~k 183 (196)
T 1l3k_A 182 SK 183 (196)
T ss_dssp --
T ss_pred Ch
Confidence 75
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.33 E-value=1.8e-12 Score=133.95 Aligned_cols=83 Identities=24% Similarity=0.328 Sum_probs=75.6
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..++|||+|||..+++++|+.+|+.||.|..|+++.+..+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 36899999999999999999999999999999999998899999999999999999999999999999999999999876
Q ss_pred hhH
Q 002335 297 ATR 299 (935)
Q Consensus 297 ~~~ 299 (935)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 653
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.32 E-value=2.5e-12 Score=133.65 Aligned_cols=76 Identities=22% Similarity=0.240 Sum_probs=71.3
Q ss_pred CCcceeeccCC-CCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 217 PQTKVYVGKIA-PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 217 ~~~tlfVgnLp-~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
+.++|||+||+ +.+++++|+.+|+.||.|.+|+++++ .+|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 89999999999999999999999875 2699999999999999999999999999999999997
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 78 ~~ 79 (205)
T 3tyt_A 78 KQ 79 (205)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 172
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.32 E-value=2.9e-12 Score=123.16 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=69.5
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCce-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEE
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELMLK 293 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgf-gFVeF~~~e~A~~Al~~Lng~~i~g--r~L~V~ 293 (935)
....|||+||++.+++++|..+|+.||.|.+|.++.+ .+|| |||+|.+.++|..|+..|||..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3467899999999999999999999999999988764 2578 9999999999999999999999988 889999
Q ss_pred eechh
Q 002335 294 VDQAT 298 (935)
Q Consensus 294 ~a~~~ 298 (935)
|+...
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 88764
No 173
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.32 E-value=2.4e-12 Score=114.15 Aligned_cols=72 Identities=24% Similarity=0.403 Sum_probs=66.4
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhc----C-------CcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCce
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 284 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~----G-------~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~ 284 (935)
...++|||+||++.+++++|+.+|+.| | .|.++.+.++ +|||||+|.+.++|.+|| .|||+.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 346899999999999999999999999 8 8999888765 699999999999999999 999999
Q ss_pred eCCeEEEEEe
Q 002335 285 IDGQELMLKV 294 (935)
Q Consensus 285 i~gr~L~V~~ 294 (935)
|+|+.|.|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999863
No 174
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.31 E-value=5.8e-12 Score=116.89 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=72.7
Q ss_pred CCCcceeeccCCC-----CCCHHHHHHHHHhcCCcceeeeeccCCC-CCCCceEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 002335 216 KPQTKVYVGKIAP-----TADSDFVLSVLKVCGTVKSWKRAQYPSN-GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 289 (935)
Q Consensus 216 ~~~~tlfVgnLp~-----~vte~~L~~lFs~~G~V~~vki~~d~~t-gk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~ 289 (935)
.++++|+|.||.. ...+++|+.+|++||.|.+|.|+.++.+ +.++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3578999999963 2367899999999999999999988643 689999999999999999999999999999999
Q ss_pred EEEEeech
Q 002335 290 LMLKVDQA 297 (935)
Q Consensus 290 L~V~~a~~ 297 (935)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999875
No 175
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.31 E-value=3.6e-12 Score=121.30 Aligned_cols=75 Identities=15% Similarity=0.281 Sum_probs=68.8
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||||| .+++++|+.+|+.||.|..|.+. +++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 44789999996 69999999999999999999986 35699999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 109 ~~~ 111 (121)
T 2bz2_A 109 RKQ 111 (121)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 176
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.30 E-value=3.4e-12 Score=126.41 Aligned_cols=80 Identities=21% Similarity=0.366 Sum_probs=75.7
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLK 293 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~g--r~L~V~ 293 (935)
...++|||+||+..+++++|+.+|+.||.|..+.++.+..+|+++|||||+|.+.++|.+|+..|||..|+| +.|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 346899999999999999999999999999999999997799999999999999999999999999999988 999998
Q ss_pred ee
Q 002335 294 VD 295 (935)
Q Consensus 294 ~a 295 (935)
|+
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 177
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.30 E-value=4.2e-12 Score=125.30 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=74.1
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeE--EEEEe
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE--LMLKV 294 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~--L~V~~ 294 (935)
..++|||+||+..+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..|+|+. |.|+|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4578999999999999999999999999999999999889999999999999999999999999999999975 77777
Q ss_pred e
Q 002335 295 D 295 (935)
Q Consensus 295 a 295 (935)
+
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 178
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.29 E-value=4.5e-12 Score=121.07 Aligned_cols=74 Identities=20% Similarity=0.182 Sum_probs=66.5
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCce-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEee
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELMLKVD 295 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgf-gFVeF~~~e~A~~Al~~Lng~~i~g--r~L~V~~a 295 (935)
..|||+||++.+++++|..+|+.||.|.+|.|+.. .|| |||+|.+.++|..|+..|||..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45789999999999999999999999999998652 276 9999999999999999999999988 58999988
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 764
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.29 E-value=6.1e-12 Score=136.10 Aligned_cols=84 Identities=13% Similarity=0.305 Sum_probs=76.5
Q ss_pred CCCCCcceeeccCCCCCCHHHHH----HHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 002335 214 AEKPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 289 (935)
Q Consensus 214 ~~~~~~tlfVgnLp~~vte~~L~----~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~ 289 (935)
...+.++|||+||++.+++++|+ .+|+.||.|..|++++ +|+++|||||+|.+.++|.+||..|||+.|+|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34568999999999999999966 8999999999999876 7889999999999999999999999999999999
Q ss_pred EEEEeechhHH
Q 002335 290 LMLKVDQATRE 300 (935)
Q Consensus 290 L~V~~a~~~~~ 300 (935)
|.|.|+.....
T Consensus 82 l~v~~a~~~~~ 92 (282)
T 3pgw_A 82 MRIQYAKTDSD 92 (282)
T ss_pred EEEEEeccCcc
Confidence 99999876543
No 180
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.29 E-value=3.8e-12 Score=126.12 Aligned_cols=80 Identities=24% Similarity=0.402 Sum_probs=75.0
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
+.++|||+|||+.+++++|+.+|+.||.|.+|++++++.+|+++|||||+|.+.++|..||. +++.|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 36899999999999999999999999999999999998899999999999999999999998 4789999999999887
Q ss_pred hh
Q 002335 297 AT 298 (935)
Q Consensus 297 ~~ 298 (935)
..
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 64
No 181
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.28 E-value=4.7e-12 Score=126.09 Aligned_cols=79 Identities=13% Similarity=0.314 Sum_probs=73.6
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEE
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMLK 293 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~---gr~L~V~ 293 (935)
..++|||+||+..+++++|+.+|+.||.|..|.++.+ .+|+++|||||+|.+.++|.+|+..|||..|. |+.|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC-CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 4679999999999999999999999999999999998 47999999999999999999999999998776 4999999
Q ss_pred eec
Q 002335 294 VDQ 296 (935)
Q Consensus 294 ~a~ 296 (935)
|+.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 182
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.27 E-value=5.3e-12 Score=129.95 Aligned_cols=78 Identities=18% Similarity=0.174 Sum_probs=72.0
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
.++|||+|||+.+++++|+.+|+.||.|..|+|+++. +|.++|||||+|.+.++|..||..+ +..|+|+.|.|.|...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 5899999999999999999999999999999999984 6999999999999999999999865 5699999999998654
No 183
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=3.2e-12 Score=113.99 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=64.6
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..++|||+|||+.+++++|+.+|+.||.|..|.|+.+ ++|||||+|.+.++|.+|+. .++.++|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 4689999999999999999999999999999999865 67999999999999975433 2456689999999876
Q ss_pred hh
Q 002335 297 AT 298 (935)
Q Consensus 297 ~~ 298 (935)
..
T Consensus 77 ~~ 78 (88)
T 1wf0_A 77 PK 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 184
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.25 E-value=9.1e-12 Score=124.03 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=73.2
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCC--CCCceEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG--TPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 291 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tg--k~kgfgFVeF~~~e~A~~Al~~Lng~~i~---gr~L~ 291 (935)
..++|||+|||+.+++++|+.+|+.||.|.+|+++++..+| +++|||||+|.+.++|..|+..|||..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 36899999999999999999999999999999999997776 89999999999999999999999998876 56777
Q ss_pred EEeech
Q 002335 292 LKVDQA 297 (935)
Q Consensus 292 V~~a~~ 297 (935)
|.++..
T Consensus 82 ~~~~~~ 87 (175)
T 3nmr_A 82 MKPADS 87 (175)
T ss_dssp EEECGG
T ss_pred Eccccc
Confidence 776554
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.22 E-value=1.7e-11 Score=129.05 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=72.8
Q ss_pred CCCcceeeccCCC-CCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 216 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 216 ~~~~tlfVgnLp~-~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
.+.++|||+|||+ .+++++|+.+|+.||.|..|+++.+. +|||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4578999999999 99999999999999999999999874 78999999999999999999999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 8653
No 186
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.21 E-value=1.5e-11 Score=123.13 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=71.1
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||+||+..+++++|+.+|+.||.|..+ ..+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 346899999999999999999999999988765 368999999999999999999999999999999999999998
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 172 ~~ 173 (175)
T 1fje_B 172 GE 173 (175)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.21 E-value=1.7e-11 Score=133.30 Aligned_cols=82 Identities=12% Similarity=0.236 Sum_probs=75.3
Q ss_pred CCCcceeeccCCCC-CCHHHHHHHHHhcCCcceeeeeccCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002335 216 KPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPS-NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 293 (935)
Q Consensus 216 ~~~~tlfVgnLp~~-vte~~L~~lFs~~G~V~~vki~~d~~-tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~ 293 (935)
...++|||+||++. +++++|+.+|+.||.|..|+++.+.. ||.++|||||+|.+.++|.+|| .|||..|+|+.|.|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 45789999999999 99999999999999999999999864 5999999999999999999999 999999999999999
Q ss_pred eechh
Q 002335 294 VDQAT 298 (935)
Q Consensus 294 ~a~~~ 298 (935)
|+..+
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98753
No 188
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.20 E-value=1.2e-11 Score=130.87 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=71.3
Q ss_pred CCCCcceeeccCCCCC---------CHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCcee
Q 002335 215 EKPQTKVYVGKIAPTA---------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 285 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~v---------te~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i 285 (935)
....++||||||+..+ ++++|+.+|+.||.|.+|+|+.+ +|||||+|.+.++|..|+..|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567999999999998 68999999999999999999875 59999999999999999999999999
Q ss_pred ------------CCeEEEEEeechhH
Q 002335 286 ------------DGQELMLKVDQATR 299 (935)
Q Consensus 286 ------------~gr~L~V~~a~~~~ 299 (935)
+|+.|.|.|+....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998753
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.20 E-value=1.1e-11 Score=124.04 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=73.3
Q ss_pred CCCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 215 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
....++|||+|||..+++++|+.+|..||.|.. .++.+..+|+++|||||+|.+.++|.+||. |||..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 355799999999999999999999999999887 344445689999999999999999999995 999999999999999
Q ss_pred echh
Q 002335 295 DQAT 298 (935)
Q Consensus 295 a~~~ 298 (935)
+...
T Consensus 88 ~~~~ 91 (175)
T 1fje_B 88 PKGR 91 (175)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8763
No 190
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.20 E-value=3.5e-11 Score=130.22 Aligned_cols=82 Identities=17% Similarity=0.271 Sum_probs=78.1
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
..++|||+|||+.+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred hh
Q 002335 297 AT 298 (935)
Q Consensus 297 ~~ 298 (935)
..
T Consensus 174 ~~ 175 (284)
T 3smz_A 174 AG 175 (284)
T ss_dssp GG
T ss_pred CC
Confidence 63
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.18 E-value=3.1e-11 Score=125.31 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=69.9
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCc--ceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCe----E
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV--KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ----E 289 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V--~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr----~ 289 (935)
.+.++|||+|||+.+++++|+.+|+.||.| .+++++.+. |..+|||||+|.+.++|..||..|||+.|+|. .
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 346899999999999999999999999999 889988873 56679999999999999999999999999987 5
Q ss_pred EEEEee
Q 002335 290 LMLKVD 295 (935)
Q Consensus 290 L~V~~a 295 (935)
+.|+|+
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777765
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.17 E-value=3.9e-11 Score=129.89 Aligned_cols=83 Identities=20% Similarity=0.235 Sum_probs=77.9
Q ss_pred CCCcceeeccCCCCC-CHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002335 216 KPQTKVYVGKIAPTA-DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 294 (935)
Q Consensus 216 ~~~~tlfVgnLp~~v-te~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~ 294 (935)
...++|||+|||..+ ++++|+.+|+.||.|..|+|+.+. +|+++|||||+|.+.++|.+|+..|||..|+|+.|.|.|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 457899999999995 899999999999999999999985 899999999999999999999999999999999999999
Q ss_pred echhH
Q 002335 295 DQATR 299 (935)
Q Consensus 295 a~~~~ 299 (935)
+....
T Consensus 261 a~~~~ 265 (284)
T 3smz_A 261 CAPGP 265 (284)
T ss_dssp CCSSS
T ss_pred ecCCC
Confidence 98764
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.16 E-value=3.2e-11 Score=123.35 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=71.6
Q ss_pred CcceeeccCCC-CCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002335 218 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 296 (935)
Q Consensus 218 ~~tlfVgnLp~-~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~ 296 (935)
.++|||+|||+ .+++++|+.+|+.||.|..|+++.++ +|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999998874 7899999999999999999999999999999999987
Q ss_pred hh
Q 002335 297 AT 298 (935)
Q Consensus 297 ~~ 298 (935)
..
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.16 E-value=7.4e-11 Score=109.40 Aligned_cols=82 Identities=17% Similarity=0.084 Sum_probs=70.5
Q ss_pred CCCcceeeccCCC--CCCH--------HHHHHHHHhcCCcceeeeeccCCC--CCCCceEEEEeCCHHHHHHHHHHhCCc
Q 002335 216 KPQTKVYVGKIAP--TADS--------DFVLSVLKVCGTVKSWKRAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKF 283 (935)
Q Consensus 216 ~~~~tlfVgnLp~--~vte--------~~L~~lFs~~G~V~~vki~~d~~t--gk~kgfgFVeF~~~e~A~~Al~~Lng~ 283 (935)
.+++.|.+.|+-. .+.+ ++|+.+|++||.|.+|.|+++..+ +.++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 3578899999732 3332 589999999999999999988644 468999999999999999999999999
Q ss_pred eeCCeEEEEEeech
Q 002335 284 NIDGQELMLKVDQA 297 (935)
Q Consensus 284 ~i~gr~L~V~~a~~ 297 (935)
.|+|+.|.|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998765
No 195
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=5.3e-11 Score=111.33 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=68.1
Q ss_pred CCCcceeeccCCCCCC-----------HHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCce
Q 002335 216 KPQTKVYVGKIAPTAD-----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 284 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vt-----------e~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~ 284 (935)
.+.++|+|.||..... +++|+.+|+.||.|..|.| .+. .++|||||+|.+.++|.+||..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3478999999954432 4799999999999999965 442 378999999999999999999999999
Q ss_pred eCCeEEEEEeechh
Q 002335 285 IDGQELMLKVDQAT 298 (935)
Q Consensus 285 i~gr~L~V~~a~~~ 298 (935)
|+|+.|.|.|+...
T Consensus 89 ~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGGRQITAQAWDGT 102 (112)
T ss_dssp ETTEECEEEECCSC
T ss_pred ECCcEEEEEEeCCC
Confidence 99999999998764
No 196
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.14 E-value=1.6e-11 Score=124.98 Aligned_cols=80 Identities=18% Similarity=0.283 Sum_probs=66.2
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceee-----eeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWK-----RAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 291 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vk-----i~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~ 291 (935)
..++|||+|||+.+++++|+.+|+.||.|..+. .+.+...++++|||||+|.+.++|.+|| .|||..|+|+.|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 368999999999999999999999996554431 1222234566899999999999999999 7999999999999
Q ss_pred EEeech
Q 002335 292 LKVDQA 297 (935)
Q Consensus 292 V~~a~~ 297 (935)
|.++..
T Consensus 82 v~~~~~ 87 (198)
T 2yh0_A 82 IRRPHD 87 (198)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 998765
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.13 E-value=2.1e-11 Score=112.85 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=64.5
Q ss_pred eccCCCCCCHHHHHHHH------------HhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 002335 223 VGKIAPTADSDFVLSVL------------KVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 290 (935)
Q Consensus 223 VgnLp~~vte~~L~~lF------------s~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L 290 (935)
++||++.+++++|+.+| ++||.|.+|.|+++. +|+++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777888887777666 999999999999884 68999999999999999999999999999999999
Q ss_pred EEEee
Q 002335 291 MLKVD 295 (935)
Q Consensus 291 ~V~~a 295 (935)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99885
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.12 E-value=1.1e-10 Score=125.35 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=70.9
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
...++|||||||+.+++++|+.+|+.||.|..|.+.++ +|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 44689999999999999999999999999999999765 599999999999999999999999999999999988
Q ss_pred ch
Q 002335 296 QA 297 (935)
Q Consensus 296 ~~ 297 (935)
..
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 199
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.10 E-value=1.1e-10 Score=119.24 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=71.2
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcC-CcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 293 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G-~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~-gr~L~V~ 293 (935)
.+.++|||+||+..+++++|+.+|+.|| .|..|+++.+ .+|||||+|.+.++|.+|+..|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3478999999999999999999999999 9999998764 2689999999999999999999999999 9999999
Q ss_pred eech
Q 002335 294 VDQA 297 (935)
Q Consensus 294 ~a~~ 297 (935)
|+..
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9865
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.09 E-value=1.3e-10 Score=126.29 Aligned_cols=81 Identities=17% Similarity=0.280 Sum_probs=71.0
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcC-CcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G-~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
..++|||+|||+.+++++|..+|+.|| .|..|.++.+. .|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 99999999985 5889999999999999999999999999999999999998
Q ss_pred chh
Q 002335 296 QAT 298 (935)
Q Consensus 296 ~~~ 298 (935)
...
T Consensus 195 ~~~ 197 (292)
T 2ghp_A 195 NPL 197 (292)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.08 E-value=1.6e-10 Score=124.12 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=73.3
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhC-CceeC---CeEEEE
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN-KFNID---GQELML 292 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Ln-g~~i~---gr~L~V 292 (935)
+.++|||+||++.+++++|+.+|+.||.|..|.|+.+ .+|+++|||||+|.+.++|.+||..|| |..+. |+.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999999999999999999999999999999 699999999999999999999999994 55554 999999
Q ss_pred Eeech
Q 002335 293 KVDQA 297 (935)
Q Consensus 293 ~~a~~ 297 (935)
.++..
T Consensus 174 ~~~~~ 178 (261)
T 3sde_A 174 EPMEQ 178 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98775
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.07 E-value=1.8e-10 Score=109.07 Aligned_cols=81 Identities=17% Similarity=0.078 Sum_probs=70.5
Q ss_pred CCcceeeccCCC--CC---CHHHHHHHHHhcCCcceeeeeccCC----CCCCCceEEEEeCCHHHHHHHHHHhCCceeCC
Q 002335 217 PQTKVYVGKIAP--TA---DSDFVLSVLKVCGTVKSWKRAQYPS----NGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 287 (935)
Q Consensus 217 ~~~tlfVgnLp~--~v---te~~L~~lFs~~G~V~~vki~~d~~----tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~g 287 (935)
++++|++.|+-. .+ -+++|+..|++||.|.+|.|+++.. ++.++|||||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999842 12 2468999999999999999998853 45778999999999999999999999999999
Q ss_pred eEEEEEeech
Q 002335 288 QELMLKVDQA 297 (935)
Q Consensus 288 r~L~V~~a~~ 297 (935)
+.|.|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999765
No 203
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.06 E-value=2.4e-10 Score=120.18 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=71.0
Q ss_pred CCCcceeeccCCCCCCHHHHHHHHHhcC-CcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 002335 216 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 293 (935)
Q Consensus 216 ~~~~tlfVgnLp~~vte~~L~~lFs~~G-~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~-gr~L~V~ 293 (935)
.+.++|||+||+..+++++|+.+|+.|| .|..|+++.+ .+|||||+|.+.++|.+||..|||..|+ |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4568999999999999999999999999 9999998663 2689999999999999999999999999 9999999
Q ss_pred eech
Q 002335 294 VDQA 297 (935)
Q Consensus 294 ~a~~ 297 (935)
|+..
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9865
No 204
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.03 E-value=3.6e-10 Score=112.34 Aligned_cols=74 Identities=22% Similarity=0.398 Sum_probs=64.3
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhc----C-------CcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCcee
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 285 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~----G-------~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i 285 (935)
..++|||+|||+.+++++|+.+|+.| | .|..+.+ ++++|||||+|.+.++|.+|| .|||+.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 5 4444444 445799999999999999999 7999999
Q ss_pred CCeEEEEEeech
Q 002335 286 DGQELMLKVDQA 297 (935)
Q Consensus 286 ~gr~L~V~~a~~ 297 (935)
+|+.|.|.++..
T Consensus 76 ~g~~i~v~~~~~ 87 (172)
T 2g4b_A 76 QGQSLKIRRPHD 87 (172)
T ss_dssp TTEECEEECCSS
T ss_pred cCceeeecCCcc
Confidence 999999987654
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.94 E-value=1.2e-09 Score=121.51 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=66.3
Q ss_pred CCCCcceeecc--CCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeC---Ce-
Q 002335 215 EKPQTKVYVGK--IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQ- 288 (935)
Q Consensus 215 ~~~~~tlfVgn--Lp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~---gr- 288 (935)
..+..+||||| |++.+++++|+.+|+.||.|.+|.+.. ++|||||+|.+.++|.+||..|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45678999999 688999999999999999999987754 3699999999999999999999999883 44
Q ss_pred -EEEEEeech
Q 002335 289 -ELMLKVDQA 297 (935)
Q Consensus 289 -~L~V~~a~~ 297 (935)
.|.|.+...
T Consensus 89 ~~ly~~~~~~ 98 (345)
T 3tht_A 89 ITLYLNFVEK 98 (345)
T ss_dssp EECEEEECSS
T ss_pred eEEEEEEeec
Confidence 577887643
No 206
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=4.3e-09 Score=96.61 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeechh
Q 002335 228 PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 298 (935)
Q Consensus 228 ~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~~ 298 (935)
..+++++|+.+|+.||.|..|.|+ ++++|||||+|.+.++|..||..++ .+.|+.|+|.|+...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCC
Confidence 468899999999999999999987 3678999999999999999999755 468999999997653
No 207
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.85 E-value=7.6e-09 Score=97.29 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=64.5
Q ss_pred CCcceeeccCCCCCC----------HHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeC
Q 002335 217 PQTKVYVGKIAPTAD----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 286 (935)
Q Consensus 217 ~~~tlfVgnLp~~vt----------e~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~ 286 (935)
++++|.+.|+-.... .++|+..|++||.|.+|.|.++. .+|||||+|.+.++|.+|+..|||..|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 356788888643222 14789999999999999987652 4899999999999999999999999999
Q ss_pred CeEEEEEeech
Q 002335 287 GQELMLKVDQA 297 (935)
Q Consensus 287 gr~L~V~~a~~ 297 (935)
|+.|.|.|...
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999864
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=1.8e-08 Score=95.35 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=73.9
Q ss_pred CCCcceeeccCCCC-CCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCC-HHHHHHHHHHhC--CceeCCeEEE
Q 002335 216 KPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES-AEGVLRALRLLN--KFNIDGQELM 291 (935)
Q Consensus 216 ~~~~tlfVgnLp~~-vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~-~e~A~~Al~~Ln--g~~i~gr~L~ 291 (935)
...+.|||+||++. ++.++|+.+|+.||.|..|.++.+. .+|||.|.+ ..+|..|+..|| |+.|+|..+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 45789999999999 9999999999999999999998874 469999999 899999999994 7899999888
Q ss_pred EEeechh--HHHHHHHHHH
Q 002335 292 LKVDQAT--REYLERYVDK 308 (935)
Q Consensus 292 V~~a~~~--~~~l~~~k~k 308 (935)
|.+-... +.||.+..+.
T Consensus 90 ~evL~GeeE~~yw~Ki~ed 108 (121)
T 1owx_A 90 WEVLEGEVEKEALKKIIED 108 (121)
T ss_dssp EEECCHHHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHH
Confidence 8775543 3566665543
No 209
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=2.8e-08 Score=88.66 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=61.6
Q ss_pred CCCcceeeccCCC----CCCH----HHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCC
Q 002335 216 KPQTKVYVGKIAP----TADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 287 (935)
Q Consensus 216 ~~~~tlfVgnLp~----~vte----~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~g 287 (935)
++..||+|..++. ..-+ .+|...|+.||.|..++++.+ .|||+|.+.++|.+||. |||+.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 4467888887762 2333 478999999999999999986 38999999999999999 99999999
Q ss_pred eEEEEEeech
Q 002335 288 QELMLKVDQA 297 (935)
Q Consensus 288 r~L~V~~a~~ 297 (935)
+.|+|.++..
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999987653
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=1.1e-07 Score=85.26 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=61.4
Q ss_pred CCCCcceeeccCCCC------CCH---HHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCcee
Q 002335 215 EKPQTKVYVGKIAPT------ADS---DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 285 (935)
Q Consensus 215 ~~~~~tlfVgnLp~~------vte---~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i 285 (935)
.++..||+|..++.. ..+ .+|...|+.||.|..++++.++ |||+|.+.++|.+||. |||+.|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 455789999988643 333 3688999999999999999973 9999999999999999 999999
Q ss_pred CCeEEEEEe
Q 002335 286 DGQELMLKV 294 (935)
Q Consensus 286 ~gr~L~V~~ 294 (935)
+|+.|+|.+
T Consensus 83 ~Gr~L~V~~ 91 (95)
T 1ufw_A 83 KGRAVKISG 91 (95)
T ss_dssp TTEEEEEEC
T ss_pred CCeEEEEec
Confidence 999999986
No 211
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.36 E-value=4.9e-07 Score=94.33 Aligned_cols=68 Identities=19% Similarity=0.073 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHhcCCcceeeeeccC----CCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeech
Q 002335 230 ADSDFVLSVLKVCGTVKSWKRAQYP----SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 297 (935)
Q Consensus 230 vte~~L~~lFs~~G~V~~vki~~d~----~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a~~ 297 (935)
-.+++|...|+.||.|.++.|+++. .+|.++||+||+|.+.++|.+|+..|||..|+||.|.|.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3456899999999999999998553 3558999999999999999999999999999999999999765
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.86 E-value=6.5e-05 Score=68.77 Aligned_cols=71 Identities=10% Similarity=0.071 Sum_probs=66.5
Q ss_pred CCcceeeccCCCCCCHHHHHHHHHhc-----CCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002335 217 PQTKVYVGKIAPTADSDFVLSVLKVC-----GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 291 (935)
Q Consensus 217 ~~~tlfVgnLp~~vte~~L~~lFs~~-----G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~ 291 (935)
..++|-+-|||..+++..|+.|+..| |.|..+.++.|. +-|+|+|.+...|.+|.-+|+|..|+|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46889999999999999999999999 999999999885 7799999999999999999999999999999
Q ss_pred EE
Q 002335 292 LK 293 (935)
Q Consensus 292 V~ 293 (935)
|.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 96
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.34 E-value=0.006 Score=55.58 Aligned_cols=76 Identities=12% Similarity=0.020 Sum_probs=63.8
Q ss_pred CCcceeeccCCCCC-CH----HHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002335 217 PQTKVYVGKIAPTA-DS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 291 (935)
Q Consensus 217 ~~~tlfVgnLp~~v-te----~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~ 291 (935)
..++|+|.||+..| .. ..++.+|..|+.+..|...+. -.-..|.|.+.++|.+|-..|++..|+|+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35789999998754 22 467899999999999887764 23568999999999999999999999999999
Q ss_pred EEeechh
Q 002335 292 LKVDQAT 298 (935)
Q Consensus 292 V~~a~~~ 298 (935)
|-+++..
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998843
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.07 E-value=0.087 Score=47.33 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=46.0
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhC
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 281 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Ln 281 (935)
..++| +.|..+...+|..+|+.||. ..|+++-| .-|||.|.+.+.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 44555 99999999999999999994 45777777 689999999999999998763
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.74 E-value=0.067 Score=47.76 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=56.0
Q ss_pred cceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCC--CCceEEEEeCCHHHHHHHHHHhCCceeC
Q 002335 219 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT--PKGFGFCEFESAEGVLRALRLLNKFNID 286 (935)
Q Consensus 219 ~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk--~kgfgFVeF~~~e~A~~Al~~Lng~~i~ 286 (935)
+.|.|.+||++++++++...++.++.+..+..+....+.+ .-+-|||.|.+.+++..-...++|+.|-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5789999999999999999999988877666665543322 3356999999999999999999999874
No 216
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.10 E-value=0.11 Score=47.26 Aligned_cols=67 Identities=22% Similarity=0.363 Sum_probs=55.7
Q ss_pred CcceeeccCCCCCCHHHHHHHHHh-----cCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKV-----CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 292 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~-----~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V 292 (935)
..+|.|.|||..+.++.|.-+|.. -|.|.+|.... +-|+|+|.+...|.+.|.. ..|.|+|..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 678999999999999999999986 24677776533 5689999999999999873 478899988888
Q ss_pred E
Q 002335 293 K 293 (935)
Q Consensus 293 ~ 293 (935)
.
T Consensus 79 ~ 79 (104)
T 2dhx_A 79 R 79 (104)
T ss_dssp E
T ss_pred E
Confidence 4
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=92.99 E-value=0.068 Score=48.16 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=45.7
Q ss_pred ceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhC
Q 002335 220 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 281 (935)
Q Consensus 220 tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Ln 281 (935)
.++| +.|..+...+|..+|+.|| -..|+++-| .-|||.|.+.+.|..|+..++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4555 9999999999999999999 445777777 689999999999999999764
No 218
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=92.98 E-value=0.19 Score=46.97 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=53.7
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCC-eEEEEEe
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QELMLKV 294 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~g-r~L~V~~ 294 (935)
.+.|.|-+.+... -..+...|+.||.|....... ...+-.|.|.+..+|.+||.. ||..|+| -.|-|..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKP 93 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEE
Confidence 4566777777664 457888999999999877621 247999999999999999995 9999985 4555554
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=92.35 E-value=0.083 Score=51.23 Aligned_cols=36 Identities=19% Similarity=0.070 Sum_probs=29.9
Q ss_pred eeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCce
Q 002335 247 SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 284 (935)
Q Consensus 247 ~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~ 284 (935)
.++|+.+ ..+++|||||+|.+.++|.+|+..+++..
T Consensus 2 ~~kl~ln--~~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILN--GKTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEE--CSSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEec--CccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 4677776 34789999999999999999998887643
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=91.60 E-value=0.08 Score=51.04 Aligned_cols=47 Identities=21% Similarity=0.162 Sum_probs=39.6
Q ss_pred eeeeccCCCCCCCceEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEeech
Q 002335 248 WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKVDQA 297 (935)
Q Consensus 248 vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~L-ng~~i~gr~L~V~~a~~ 297 (935)
+.+..+ ..+.+||++|+|.+.+.|.+|+..| ||..|+| .|.|+++..
T Consensus 3 ~al~l~--g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 3 YKLILN--GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp EEEEEC--CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred eEeeec--cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 344443 5678999999999999999999999 9999999 899887654
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.90 E-value=0.8 Score=43.38 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=53.6
Q ss_pred ceeeccCCCCCCHHHHHHHHHhcCCccee-eeeccC--------CCC-----CCCceEEEEeCCHHHHHHHHHHhCCcee
Q 002335 220 KVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYP--------SNG-----TPKGFGFCEFESAEGVLRALRLLNKFNI 285 (935)
Q Consensus 220 tlfVgnLp~~vte~~L~~lFs~~G~V~~v-ki~~d~--------~tg-----k~kgfgFVeF~~~e~A~~Al~~Lng~~i 285 (935)
.|.|-+.|... ...+...|++||.|..- .+.... ... ....+-.|+|.+..+|.+||.. ||..|
T Consensus 9 ~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii 86 (132)
T 3p3d_A 9 AILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVF 86 (132)
T ss_dssp EEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEE
T ss_pred EEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEe
Confidence 34555555443 45777899999999873 222100 000 1246779999999999999995 99999
Q ss_pred CCeEEEEEeechhHHHHHHH
Q 002335 286 DGQELMLKVDQATREYLERY 305 (935)
Q Consensus 286 ~gr~L~V~~a~~~~~~l~~~ 305 (935)
+|.-|-|... .+..++.+
T Consensus 87 ~G~mIGV~Py--~~~~ve~l 104 (132)
T 3p3d_A 87 NGVLLGVIPY--TKDAVERL 104 (132)
T ss_dssp TTEECEEEEC--CHHHHHHH
T ss_pred CcEEEEEEEC--CHHHHHHH
Confidence 9986666554 33444444
No 222
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=87.97 E-value=0.25 Score=56.73 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=42.6
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHH
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 279 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~ 279 (935)
.++|||. ++..+++.+|.++|++||.|.++.+-.+ . +.|+.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~---g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--F---GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--S---SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--C---CeEEEEEeCCHHHHHHHHhc
Confidence 5789997 7999999999999999999999887664 2 38999999999999877653
No 223
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=86.25 E-value=0.77 Score=41.29 Aligned_cols=69 Identities=7% Similarity=0.048 Sum_probs=50.4
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCC--CCceEEEEeCCHHHHHHHHHHhCCceeC
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT--PKGFGFCEFESAEGVLRALRLLNKFNID 286 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk--~kgfgFVeF~~~e~A~~Al~~Lng~~i~ 286 (935)
+-.|.|..||+++|++++...++.+-.+.....+....+-+ .-.-|||.|.+.+++..-...++|+.|-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 46799999999999999888887654443323332221211 2356899999999999999999998874
No 224
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=68.98 E-value=1.7 Score=32.76 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q 002335 892 ASQMLELLQTILDDEAEMFVLKM 914 (935)
Q Consensus 892 ~~~~~~~l~~~ld~~a~~fv~~l 914 (935)
-..||++|..||+.+|+.||..+
T Consensus 16 ~D~lLDeId~vLE~NAeeFV~~f 38 (44)
T 3m91_B 16 TDDLLDEIDDVLEENAEDFVRAY 38 (44)
T ss_dssp HHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 35899999999999999999764
No 225
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=67.28 E-value=14 Score=32.71 Aligned_cols=70 Identities=16% Similarity=0.333 Sum_probs=52.1
Q ss_pred HHhhhhhHHHHHHHhhcCcchhH--HHHHHHHhhhccCCHHHHHHHHHHhhhHH-HH---HHHHHHHHHHHHHHHhhhhc
Q 002335 855 LHERMRPWISKKITEFLGEEETT--LVDYIVSSTQDHVKASQMLELLQTILDDE-AE---MFVLKMWRMLIFEIKKVETG 928 (935)
Q Consensus 855 ~~~~~~pwi~kki~e~lG~ee~~--lv~~i~~~l~~~~~~~~~~~~l~~~ld~~-a~---~fv~~lwr~li~e~~~~~~g 928 (935)
+-+-||--|.+|...+=.|-|++ +-+||+=+|....++..++.+|...+|.= .+ .||.-.+ |+......|
T Consensus 6 i~~nLK~ivaekL~~~~NF~EDv~YVAEyIvlLisNg~s~~sivqELssLFd~v~~~a~~~vVqt~F----~~l~~L~~g 81 (104)
T 2v75_A 6 YTENLKVIVAEKLAGIPNFNEDIKYVAEYIVLLIVNGGTVESVVDELASLFDSVSRDTLANVVQTAF----FALEALQQG 81 (104)
T ss_dssp CHHHHHHHHHHHHTTSTTCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHCTTSCHHHHHHHHHHHH----HHHHHHHTT
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCChHHHHHHHHHHHccccHHHHHHHHHHHH----HHHHHHHCC
Confidence 44568888999998886665554 88999999999999999999999999943 33 5655444 444444444
No 226
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=65.33 E-value=9.2 Score=44.45 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=46.1
Q ss_pred CcceeeccCCCCCCHHHHHHHHHhcCCcceeeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhC
Q 002335 218 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 281 (935)
Q Consensus 218 ~~tlfVgnLp~~vte~~L~~lFs~~G~V~~vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Ln 281 (935)
...++|+ .+..+...+|..+|+.||. ..|+++.+ ..+||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 3466676 8888899999999999995 46766665 689999999999999999885
No 227
>3qks_C DNA double-strand break repair protein MRE11; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_C* 3qku_C*
Probab=56.69 E-value=5.1 Score=28.26 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=16.6
Q ss_pred HHHHHHhhcCcchhHHHHHHHHhhh
Q 002335 863 ISKKITEFLGEEETTLVDYIVSSTQ 887 (935)
Q Consensus 863 i~kki~e~lG~ee~~lv~~i~~~l~ 887 (935)
+..||+++||+.+=.=+|+|++.|.
T Consensus 7 ~ElKiI~l~Gek~~e~~d~vi~l~~ 31 (34)
T 3qks_C 7 FELKIIDILGEKDFDDFDYIIKLIT 31 (34)
T ss_dssp HHHHHHHHC------CHHHHHHHTT
T ss_pred HHHHHHHHHccchHHHHHHHHHHHH
Confidence 4789999999988888999999875
No 228
>3m9d_G Prokaryotic ubiquitin-like protein PUP; alpha helix coil COIL, 5 beta-strand barrel, ATP-binding, CH nucleotide-binding, proteasome; 4.50A {Mycobacterium tuberculosis}
Probab=39.33 E-value=3.9 Score=33.67 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q 002335 891 KASQMLELLQTILDDEAEMFVLKM 914 (935)
Q Consensus 891 ~~~~~~~~l~~~ld~~a~~fv~~l 914 (935)
+-..||++|..||+.+|+.||..+
T Consensus 39 ~~D~lLDeId~vLe~NAeefV~~f 62 (68)
T 3m9d_G 39 ETDDLLDEIDDVLEENAEDFVRAY 62 (68)
T ss_dssp TTTTHHHHHTTTSSSCC-------
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445789999999999999999764
No 229
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=28.48 E-value=1.5e+02 Score=27.02 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccc
Q 002335 908 EMFVLKMWRMLIFEIKKVETGLAL 931 (935)
Q Consensus 908 ~~fv~~lwr~li~e~~~~~~g~~~ 931 (935)
..||.+||+.||-+..+.+..++.
T Consensus 77 ~~~i~~if~~Ii~~S~~~Q~~~~~ 100 (114)
T 3rmi_A 77 PDFAEKFLKFIIKEVVHQHEVIAE 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999988888776653
No 230
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=28.22 E-value=79 Score=26.17 Aligned_cols=58 Identities=9% Similarity=0.103 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHhcCCcce-----eeeeccCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002335 229 TADSDFVLSVLKVCGTVKS-----WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 295 (935)
Q Consensus 229 ~vte~~L~~lFs~~G~V~~-----vki~~d~~tgk~kgfgFVeF~~~e~A~~Al~~Lng~~i~gr~L~V~~a 295 (935)
.+...+|..++..-+.|.. +.+ .+ .|.||+... ..+..++..|++..+.|+.+.|..+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i-~d-------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITI-MD-------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEE-CS-------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEE-eC-------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 4556677777776555543 333 33 599998876 4577888999999999999988765
Done!