BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002337
(934 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 237 bits (604), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 183/570 (32%), Positives = 287/570 (50%), Gaps = 80/570 (14%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
+LL+G PG GK + R VA G + +M+ ++ + L +AF A+ +P
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK 518
I+ + + D + E++HG + + +
Sbjct: 300 IIFIDELDAI--------------------------------APKREKTHGEVERRIVSQ 327
Query: 519 IC--------RQQVLLVAAADSSEGLPPTIRRC--FSHEISMGPLTEQQRVEMLSQLLQP 568
+ R V+++AA + + P +RR F E+ +G R+E+L Q+
Sbjct: 328 LLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL-QIHTK 386
Query: 569 VSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVD-KNEPGES--- 624
+L D E+ + +T G + DL AL ++A IRK +D ++E ++
Sbjct: 387 NMKLADDVDLEQ----VANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVM 442
Query: 625 --------DLTAKVAHNDNSSIAATQV----MGKEDLVKAMERSKKRNASALGAPKLPLL 672
D ++ ++ S++ T V + ED + +E K+ + + P+
Sbjct: 443 NSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWED-IGGLEDVKRELQELV---QYPVE 498
Query: 673 HKDLF-SSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKN 731
H D F G+ GVL YGPPG GKTLLAKA+A EC NF+S+KGPEL+ M+ GESE N
Sbjct: 499 HPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEAN 558
Query: 732 VRDIFQKARSARPCVIFFDELDSLAPAR-GASGDSGGVMDRVVSQMLAEIDGLNDSSQDL 790
VR+IF KAR A PCV+FFDELDS+A AR G GD GG DRV++Q+L E+DG++ + +++
Sbjct: 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-TKKNV 617
Query: 791 FIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIA 850
FIIGA+NRPD+IDPA+LRPGR D+L+Y+ + D R +LKA RK + +DV L +A
Sbjct: 618 FIIGATNRPDIIDPAILRPGRLDQLIYIPL-PDEKSRVAILKANLRKSPVAKDVDLEFLA 676
Query: 851 KKCPPNFTGADMYALCADAWFHA-------AKRKVLXXXXXXXXXRIDQADSV-VVEYDD 902
K F+GAD+ +C A A R+ +++ D V + D
Sbjct: 677 KMT-NGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDH 735
Query: 903 FVKVLRELSPSLSMAELKKYELLRDQFEGS 932
F + +R S+S +++KYE+ + S
Sbjct: 736 FEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 148/247 (59%), Gaps = 6/247 (2%)
Query: 668 KLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIG 726
+LPL H LF + G++ G+LLYGPPGTGKTL+A+AVA E F + GPE+++ G
Sbjct: 221 ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280
Query: 727 ESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDS 786
ESE N+R F++A P +IF DELD++AP R + G V R+VSQ+L +DGL
Sbjct: 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQR 338
Query: 787 SQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSL 846
+ + ++ A+NRP+ IDPAL R GRFD+ + +G+ D + R +L+ T+ KL +DV L
Sbjct: 339 AH-VIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATGRLEILQIHTKNMKLADDVDL 396
Query: 847 YSIAKKCPPNFTGADMYALCADAWFHAAKRKVLXXXXXXXXXRIDQADSVVVEYDDFVKV 906
+A + GAD+ ALC++A A ++K+ + +S+ V DDF
Sbjct: 397 EQVANET-HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 907 LRELSPS 913
L + +PS
Sbjct: 456 LSQSNPS 462
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 237 bits (604), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 183/570 (32%), Positives = 287/570 (50%), Gaps = 80/570 (14%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
+LL+G PG GK + R VA G + +M+ ++ + L +AF A+ +P
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK 518
I+ + + D + E++HG + + +
Sbjct: 300 IIFIDELDAI--------------------------------APKREKTHGEVERRIVSQ 327
Query: 519 IC--------RQQVLLVAAADSSEGLPPTIRRC--FSHEISMGPLTEQQRVEMLSQLLQP 568
+ R V+++AA + + P +RR F E+ +G R+E+L Q+
Sbjct: 328 LLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL-QIHTK 386
Query: 569 VSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVD-KNEPGES--- 624
+L D E+ + +T G + DL AL ++A IRK +D ++E ++
Sbjct: 387 NMKLADDVDLEQ----VANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVM 442
Query: 625 --------DLTAKVAHNDNSSIAATQV----MGKEDLVKAMERSKKRNASALGAPKLPLL 672
D ++ ++ S++ T V + ED + +E K+ + + P+
Sbjct: 443 NSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWED-IGGLEDVKRELQELV---QYPVE 498
Query: 673 HKDLF-SSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKN 731
H D F G+ GVL YGPPG GKTLLAKA+A EC NF+S+KGPEL+ M+ GESE N
Sbjct: 499 HPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEAN 558
Query: 732 VRDIFQKARSARPCVIFFDELDSLAPAR-GASGDSGGVMDRVVSQMLAEIDGLNDSSQDL 790
VR+IF KAR A PCV+FFDELDS+A AR G GD GG DRV++Q+L E+DG++ + +++
Sbjct: 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-TKKNV 617
Query: 791 FIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIA 850
FIIGA+NRPD+IDPA+LRPGR D+L+Y+ + D R +LKA RK + +DV L +A
Sbjct: 618 FIIGATNRPDIIDPAILRPGRLDQLIYIPL-PDEKSRVAILKANLRKSPVAKDVDLEFLA 676
Query: 851 KKCPPNFTGADMYALCADAWFHA-------AKRKVLXXXXXXXXXRIDQADSV-VVEYDD 902
K F+GAD+ +C A A R+ +++ D V + D
Sbjct: 677 KMT-NGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDH 735
Query: 903 FVKVLRELSPSLSMAELKKYELLRDQFEGS 932
F + +R S+S +++KYE+ + S
Sbjct: 736 FEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 148/247 (59%), Gaps = 6/247 (2%)
Query: 668 KLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIG 726
+LPL H LF + G++ G+LLYGPPGTGKTL+A+AVA E F + GPE+++ G
Sbjct: 221 ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280
Query: 727 ESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDS 786
ESE N+R F++A P +IF DELD++AP R + G V R+VSQ+L +DGL
Sbjct: 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQR 338
Query: 787 SQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSL 846
+ + ++ A+NRP+ IDPAL R GRFD+ + +G+ D + R +L+ T+ KL +DV L
Sbjct: 339 AH-VIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATGRLEILQIHTKNMKLADDVDL 396
Query: 847 YSIAKKCPPNFTGADMYALCADAWFHAAKRKVLXXXXXXXXXRIDQADSVVVEYDDFVKV 906
+A + GAD+ ALC++A A ++K+ + +S+ V DDF
Sbjct: 397 EQVANET-HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 907 LRELSPS 913
L + +PS
Sbjct: 456 LSQSNPS 462
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 206 bits (525), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 123/268 (45%), Positives = 170/268 (63%), Gaps = 13/268 (4%)
Query: 668 KLPLLHKDLF-SSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIG 726
+ P+ H D F G+ GVL YGPPG GKTLLAKA+A EC NF+S+KGPEL+ M+ G
Sbjct: 32 QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG 91
Query: 727 ESEKNVRDIFQKARSARPCVIFFDELDSLAPAR-GASGDSGGVMDRVVSQMLAEIDGLND 785
ESE NVR+IF KAR A PCV+FFDELDS+A AR G GD GG DRV++Q+L E+DG++
Sbjct: 92 ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS- 150
Query: 786 SSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVS 845
+ +++FIIGA+NRPD+IDPA+LRPGR D+L+Y+ + D R +LKA RK + +DV
Sbjct: 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL-PDEKSRVAILKANLRKSPVAKDVD 209
Query: 846 LYSIAKKCPPNFTGADMYALCADAWFHA-------AKRKVLXXXXXXXXXRIDQADSVV- 897
L +AK F+GAD+ +C A A R+ +++ D V
Sbjct: 210 LEFLAKMT-NGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPE 268
Query: 898 VEYDDFVKVLRELSPSLSMAELKKYELL 925
+ D F + +R S+S +++KYE+
Sbjct: 269 IRRDHFEEAMRFARRSVSDNDIRKYEMF 296
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/215 (51%), Positives = 151/215 (70%), Gaps = 11/215 (5%)
Query: 670 PLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGES 728
P+ + D F + GL +GVLL GPPG GKTLLAKAVA E LNF+SVKGPEL+NMY+GES
Sbjct: 29 PVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGES 88
Query: 729 EKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQ 788
E+ VR +FQ+A+++ PCVIFFDE+D+L P R S G RVV+Q+L E+DGL ++ Q
Sbjct: 89 ERAVRQVFQRAKNSAPCVIFFDEVDALCPRR--SDRETGASVRVVNQLLTEMDGL-EARQ 145
Query: 789 DLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTR---KFKLLEDVS 845
+FI+ A+NRPD+IDPA+LRPGR DK L+VG+ R +LK +T+ K L DV+
Sbjct: 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD-RLAILKTITKNGTKPPLDADVN 204
Query: 846 LYSIAK--KCPPNFTGADMYALCADAWFHAAKRKV 878
L +IA +C +TGAD+ AL +A A ++++
Sbjct: 205 LEAIAGDLRC-DCYTGADLSALVREASICALRQEM 238
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 105/259 (40%), Gaps = 36/259 (13%)
Query: 381 SILAPTLCP---SVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASS 437
+ILAP P L L VLL G PGCGK + + VA G++ + L+
Sbjct: 25 AILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84
Query: 438 ERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTE 497
++ A+ Q F A++ +P ++ + D S+ E + +R +
Sbjct: 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-----------ETGASVRVVNQ 133
Query: 498 PSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRC--FSHEISMGPLTE 555
E + E+ RQQV ++AA + + + P I R + +G
Sbjct: 134 LLTEMDGLEA-------------RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP 180
Query: 556 QQRVEMLSQLLQPVSE--LTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSN 613
R+ +L + + ++ L +D E D+ + + DL ALV +A +R+
Sbjct: 181 ADRLAILKTITKNGTKPPLDADVNLEAIAGDL--RCDCYTGADLSALVREASICALRQ-- 236
Query: 614 SEVDKNEPGESDLTAKVAH 632
E+ + + G KV+H
Sbjct: 237 -EMARQKSGNEKGELKVSH 254
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 176 bits (446), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 148/247 (59%), Gaps = 6/247 (2%)
Query: 668 KLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIG 726
+LPL H LF + G++ G+LLYGPPGTGKTL+A+AVA E F + GPE+++ G
Sbjct: 221 ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280
Query: 727 ESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDS 786
ESE N+R F++A P +IF DELD++AP R + G V R+VSQ+L +DGL
Sbjct: 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQR 338
Query: 787 SQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSL 846
+ + ++ A+NRP+ IDPAL R GRFD+ + +G+ D + R +L+ T+ KL +DV L
Sbjct: 339 AH-VIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATGRLEILQIHTKNMKLADDVDL 396
Query: 847 YSIAKKCPPNFTGADMYALCADAWFHAAKRKVLXXXXXXXXXRIDQADSVVVEYDDFVKV 906
+A + GAD+ ALC++A A ++K+ + +S+ V DDF
Sbjct: 397 EQVANET-HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 907 LRELSPS 913
L + +PS
Sbjct: 456 LSQSNPS 462
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 47/229 (20%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
+LL+G PG GK + R VA G + +M+ ++ + L +AF A+ +P
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK 518
I+ + + D + E++HG + + +
Sbjct: 300 IIFIDELDAI--------------------------------APKREKTHGEVERRIVSQ 327
Query: 519 IC--------RQQVLLVAAADSSEGLPPTIRRC--FSHEISMGPLTEQQRVEMLSQLLQP 568
+ R V+++AA + + P +RR F E+ +G R+E+L Q+
Sbjct: 328 LLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL-QIHTK 386
Query: 569 VSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVD 617
+L D E+ + +T G + DL AL ++A IRK +D
Sbjct: 387 NMKLADDVDLEQ----VANETHGHVGADLAALCSEAALQAIRKKMDLID 431
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 176 bits (446), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 148/247 (59%), Gaps = 6/247 (2%)
Query: 668 KLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIG 726
+LPL H LF + G++ G+LLYGPPGTGKTL+A+AVA E F + GPE+++ G
Sbjct: 221 ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280
Query: 727 ESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDS 786
ESE N+R F++A P +IF DELD++AP R + G V R+VSQ+L +DGL
Sbjct: 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQR 338
Query: 787 SQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSL 846
+ + ++ A+NRP+ IDPAL R GRFD+ + +G+ D + R +L+ T+ KL +DV L
Sbjct: 339 AH-VIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATGRLEILQIHTKNMKLADDVDL 396
Query: 847 YSIAKKCPPNFTGADMYALCADAWFHAAKRKVLXXXXXXXXXRIDQADSVVVEYDDFVKV 906
+A + GAD+ ALC++A A ++K+ + +S+ V DDF
Sbjct: 397 EQVANET-HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 907 LRELSPS 913
L + +PS
Sbjct: 456 LSQSNPS 462
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 47/229 (20%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
+LL+G PG GK + R VA G + +M+ ++ + L +AF A+ +P
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK 518
I+ + + D + E++HG + + +
Sbjct: 300 IIFIDELDAI--------------------------------APKREKTHGEVERRIVSQ 327
Query: 519 IC--------RQQVLLVAAADSSEGLPPTIRRC--FSHEISMGPLTEQQRVEMLSQLLQP 568
+ R V+++AA + + P +RR F E+ +G R+E+L Q+
Sbjct: 328 LLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL-QIHTK 386
Query: 569 VSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVD 617
+L D E+ + +T G + DL AL ++A IRK +D
Sbjct: 387 NMKLADDVDLEQ----VANETHGHVGADLAALCSEAALQAIRKKMDLID 431
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 148/247 (59%), Gaps = 6/247 (2%)
Query: 668 KLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIG 726
+LPL H LF + G++ G+LLYGPPGTGKTL+A+AVA E F + GPE+++ G
Sbjct: 221 ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280
Query: 727 ESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDS 786
ESE N+R F++A P +IF DELD++AP R + G V R+VSQ+L +DGL
Sbjct: 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQR 338
Query: 787 SQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSL 846
+ + ++ A+NRP+ IDPAL R GRFD+ + +G+ D + R +L+ T+ KL +DV L
Sbjct: 339 AH-VIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATGRLEILQIHTKNMKLADDVDL 396
Query: 847 YSIAKKCPPNFTGADMYALCADAWFHAAKRKVLXXXXXXXXXRIDQADSVVVEYDDFVKV 906
+A + GAD+ ALC++A A ++K+ + +S+ V DDF
Sbjct: 397 EQVANET-HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWA 455
Query: 907 LRELSPS 913
L + +PS
Sbjct: 456 LSQSNPS 462
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 47/229 (20%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
+LL+G PG GK + R VA G + +M+ ++ + L +AF A+ +P
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK 518
I+ + + D + E++HG + + +
Sbjct: 300 IIFIDELDAI--------------------------------APKREKTHGEVERRIVSQ 327
Query: 519 IC--------RQQVLLVAAADSSEGLPPTIRRC--FSHEISMGPLTEQQRVEMLSQLLQP 568
+ R V+++AA + + P +RR F E+ +G R+E+L Q+
Sbjct: 328 LLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL-QIHTK 386
Query: 569 VSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVD 617
+L D E+ + +T G + DL AL ++A IRK +D
Sbjct: 387 NMKLADDVDLEQ----VANETHGHVGADLAALCSEAALQAIRKKMDLID 431
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 174 bits (442), Expect = 2e-43, Method: Composition-based stats.
Identities = 99/210 (47%), Positives = 136/210 (64%), Gaps = 5/210 (2%)
Query: 668 KLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIG 726
+LPL H +LF G+ G+LLYGPPGTGKTLLAKAVATE + F+ V G EL+ +IG
Sbjct: 34 ELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIG 93
Query: 727 ESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGG-VMDRVVSQMLAEIDGLND 785
E V+DIF+ A+ P +IF DE+D++A R + G + R + Q+LAE+DG D
Sbjct: 94 EGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF-D 152
Query: 786 SSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVS 845
+ D+ IIGA+NRPD++DPA+LRPGRFD+++ V D R +LK TRK L EDV+
Sbjct: 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPA-PDEKGRLEILKIHTRKMNLAEDVN 211
Query: 846 LYSIAKKCPPNFTGADMYALCADAWFHAAK 875
L IAK GA++ A+C +A +A +
Sbjct: 212 LEEIAKMT-EGCVGAELKAICTEAGMNAIR 240
Score = 37.0 bits (84), Expect = 0.053, Method: Composition-based stats.
Identities = 47/215 (21%), Positives = 86/215 (40%), Gaps = 28/215 (13%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
+LL+G PG GK + + VA + L+ + ++ + F A+ +P+
Sbjct: 53 GILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPS 112
Query: 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK 518
I+ + + D ++ D+ V R + AE + ++ G
Sbjct: 113 IIFIDEIDAIAAKRTDALTGGDR--------EVQRTLMQLLAEMDGFDARG--------- 155
Query: 519 ICRQQVLLVAAADSSEGLPPTIRRC--FSHEISMGPLTEQQRVEMLSQLLQPVSELTSDT 576
V ++ A + + L P I R F I + E+ R+E+L + ++ L D
Sbjct: 156 ----DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN-LAEDV 210
Query: 577 GSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRK 611
EE K T G + +L A+ +AG N IR+
Sbjct: 211 NLEEIAK----MTEGCVGAELKAICTEAGMNAIRE 241
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 172 bits (436), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 143/237 (60%), Gaps = 6/237 (2%)
Query: 668 KLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIG 726
+LPL H LF + G++ G+LLYGPPGTGKTL+A+AVA E F + GPE+++ G
Sbjct: 221 ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280
Query: 727 ESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDS 786
ESE N+R F++A P +IF DELD++AP R + G V R+VSQ+L +DGL
Sbjct: 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQR 338
Query: 787 SQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSL 846
+ + ++ A+NRP+ IDPAL R GRFD+ + +G+ D + R +L+ T+ KL +DV L
Sbjct: 339 AH-VIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATGRLEILQIHTKNMKLADDVDL 396
Query: 847 YSIAKKCPPNFTGADMYALCADAWFHAAKRKVLXXXXXXXXXRIDQADSVVVEYDDF 903
+A + GAD+ ALC++A A ++K+ + +S+ V DDF
Sbjct: 397 EQVANET-HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDF 452
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 47/229 (20%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
+LL+G PG GK + R VA G + +M+ ++ + L +AF A+ +P
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK 518
I+ + + D + E++HG + + +
Sbjct: 300 IIFIDELDAI--------------------------------APKREKTHGEVERRIVSQ 327
Query: 519 IC--------RQQVLLVAAADSSEGLPPTIRRC--FSHEISMGPLTEQQRVEMLSQLLQP 568
+ R V+++AA + + P +RR F E+ +G R+E+L Q+
Sbjct: 328 LLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL-QIHTK 386
Query: 569 VSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVD 617
+L D E+ + +T G + DL AL ++A IRK +D
Sbjct: 387 NMKLADDVDLEQ----VANETHGHVGADLAALCSEAALQAIRKKMDLID 431
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 167 bits (424), Expect = 2e-41, Method: Composition-based stats.
Identities = 87/192 (45%), Positives = 128/192 (66%), Gaps = 6/192 (3%)
Query: 686 GVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPC 745
GVL+ GPPGTGKTLLAKA+A E + F ++ G + + M++G VRD+F++A+ A PC
Sbjct: 47 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPC 106
Query: 746 VIFFDELDSLAPARGASGDSGGVMDR--VVSQMLAEIDGLNDSSQDLFIIGASNRPDLID 803
+IF DE+D++ RGA G GG +R ++QML E+DG + ++ + +I A+NRPD++D
Sbjct: 107 IIFIDEIDAVGRQRGA-GLGGGHDEREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDVLD 164
Query: 804 PALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMY 863
PALLRPGRFD+ + VG+ DV RE++LK R+ L D+ IA+ P F+GAD+
Sbjct: 165 PALLRPGRFDRQVVVGL-PDVRGREQILKVHMRRVPLAPDIDAAIIARGT-PGFSGADLA 222
Query: 864 ALCADAWFHAAK 875
L +A AA+
Sbjct: 223 NLVNEAALFAAR 234
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 130/198 (65%), Gaps = 6/198 (3%)
Query: 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKA 739
G R G+LL GPPGTGKTLLA+AVA E ++ F + G + + +++G VRD+F +A
Sbjct: 45 GARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQA 104
Query: 740 RSARPCVIFFDELDSLAPARGASGDSGGVMDR--VVSQMLAEIDGLNDSSQDLFIIGASN 797
++ PC++F DE+D++ RGA G GG +R ++Q+L E+DG DS + + ++ A+N
Sbjct: 105 KAHAPCIVFIDEIDAVGRHRGA-GLGGGHDEREQTLNQLLVEMDGF-DSKEGIIVMAATN 162
Query: 798 RPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNF 857
RPD++DPALLRPGRFDK + V D+ R+++L+ TR L EDV+L IAK+ P F
Sbjct: 163 RPDILDPALLRPGRFDKKIVVD-PPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRT-PGF 220
Query: 858 TGADMYALCADAWFHAAK 875
GAD+ L +A AA+
Sbjct: 221 VGADLENLVNEAALLAAR 238
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/198 (43%), Positives = 129/198 (65%), Gaps = 6/198 (3%)
Query: 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKA 739
G R G+LL GPPGTG TLLA+AVA E ++ F + G + + +++G VRD+F +A
Sbjct: 45 GARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQA 104
Query: 740 RSARPCVIFFDELDSLAPARGASGDSGGVMDR--VVSQMLAEIDGLNDSSQDLFIIGASN 797
++ PC++F DE+D++ RGA G GG +R ++Q+L E+DG DS + + ++ A+N
Sbjct: 105 KAHAPCIVFIDEIDAVGRHRGA-GLGGGHDEREQTLNQLLVEMDGF-DSKEGIIVMAATN 162
Query: 798 RPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNF 857
RPD++DPALLRPGRFDK + V D+ R+++L+ TR L EDV+L IAK+ P F
Sbjct: 163 RPDILDPALLRPGRFDKKIVVD-PPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRT-PGF 220
Query: 858 TGADMYALCADAWFHAAK 875
GAD+ L +A AA+
Sbjct: 221 VGADLENLVNEAALLAAR 238
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 159 bits (401), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 133/213 (62%), Gaps = 7/213 (3%)
Query: 668 KLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIG 726
+LP+ H +LF S G+ + GV+LYGPPGTGKTLLA+AVA F+ V G EL+ YIG
Sbjct: 165 ELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224
Query: 727 ESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGG--VMDRVVSQMLAEIDGLN 784
E + VR++F AR P +IF DE+DS+ R G GG + R + ++L ++DG
Sbjct: 225 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTR-VEGSGGGDSEVQRTMLELLNQLDGF- 282
Query: 785 DSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDV 844
++S+++ II A+NR D++DPALLRPGR D+ + S V+ R +L+ +RK L +
Sbjct: 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPS-VAARAEILRIHSRKMNLTRGI 341
Query: 845 SLYSIAKKCPPNFTGADMYALCADAWFHAAKRK 877
+L +A+K +GAD+ +C +A +A + +
Sbjct: 342 NLRKVAEKM-NGCSGADVKGVCTEAGMYALRER 373
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
V+L+G PG GK + R VA + S L+ + S + + F A+ ++P+
Sbjct: 184 GVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPS 243
Query: 459 ILLLRDFD 466
I+ + + D
Sbjct: 244 IIFMDEID 251
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 136/217 (62%), Gaps = 11/217 (5%)
Query: 668 KLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIG 726
+LPLL + F++ G+ G+LLYGPPGTGKTL A+AVA F+ V G EL+ Y+G
Sbjct: 226 ELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285
Query: 727 ESEKNVRDIFQKARSARPCVIFFDELDSLAPAR---GASGDSGGVMDRVVSQMLAEIDGL 783
E + VR++F+ AR+ + C+IFFDE+D++ AR GA GD+ + R + +++ ++DG
Sbjct: 286 EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDN--EVQRTMLELITQLDGF 343
Query: 784 NDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLED 843
D ++ ++ A+NRP+ +DPALLRPGR D+ + + D+ R + + ++ +
Sbjct: 344 -DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL-PDLEGRANIFRIHSKSMSVERG 401
Query: 844 VSLYSIAKKCPPNFTGADMYALCADAWFHA--AKRKV 878
+ I++ C PN TGA++ ++C +A A A+RKV
Sbjct: 402 IRWELISRLC-PNSTGAELRSVCTEAGMFAIRARRKV 437
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 116/184 (63%), Gaps = 6/184 (3%)
Query: 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKA 739
G R GVLL GPPG GKT LA+AVA E + F++ G + + M++G VRD+F+ A
Sbjct: 60 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA 119
Query: 740 RSARPCVIFFDELDSLAPARGASGDSGGVMDR--VVSQMLAEIDGLNDSSQDLFIIGASN 797
+ PC++F DE+D++ RG SG GG +R ++Q+L E+DG + + ++ A+N
Sbjct: 120 KRHAPCIVFIDEIDAVGRKRG-SGVGGGNDEREQTLNQLLVEMDGFEKDTA-IVVMAATN 177
Query: 798 RPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNF 857
RPD++DPALLRPGRFD+ + + DV RE++L+ R L EDV L +AK+ P F
Sbjct: 178 RPDILDPALLRPGRFDRQIAIDA-PDVKGREQILRIHARGKPLAEDVDLALLAKRT-PGF 235
Query: 858 TGAD 861
GAD
Sbjct: 236 VGAD 239
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
VLL G PG GK + R VA + + S + + +A + F TA+ ++P
Sbjct: 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125
Query: 459 ILLLRDFD-VFRNLVSNESLPNDQ 481
I+ + + D V R S ND+
Sbjct: 126 IVFIDEIDAVGRKRGSGVGGGNDE 149
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 152 bits (384), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 116/184 (63%), Gaps = 6/184 (3%)
Query: 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKA 739
G R GVLL GPPG GKT LA+AVA E + F++ G + + M++G VRD+F+ A
Sbjct: 69 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA 128
Query: 740 RSARPCVIFFDELDSLAPARGASGDSGGVMDR--VVSQMLAEIDGLNDSSQDLFIIGASN 797
+ PC++F DE+D++ RG SG GG +R ++Q+L E+DG + + ++ A+N
Sbjct: 129 KRHAPCIVFIDEIDAVGRKRG-SGVGGGNDEREQTLNQLLVEMDGFEKDTA-IVVMAATN 186
Query: 798 RPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNF 857
RPD++DPALLRPGRFD+ + + DV RE++L+ R L EDV L +AK+ P F
Sbjct: 187 RPDILDPALLRPGRFDRQIAIDA-PDVKGREQILRIHARGKPLAEDVDLALLAKRT-PGF 244
Query: 858 TGAD 861
GAD
Sbjct: 245 VGAD 248
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
VLL G PG GK + R VA + + S + + +A + F TA+ ++P
Sbjct: 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134
Query: 459 ILLLRDFD-VFRNLVSNESLPNDQ 481
I+ + + D V R S ND+
Sbjct: 135 IVFIDEIDAVGRKRGSGVGGGNDE 158
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 134/214 (62%), Gaps = 9/214 (4%)
Query: 668 KLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIG 726
+LPL H +L+ G++ GV+LYG PGTGKTLLAKAVA + S FL + G ELI Y+G
Sbjct: 199 ELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLG 258
Query: 727 ESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGG--VMDRVVSQMLAEIDGLN 784
+ + R IF+ A P ++F DE+D++ R S +SGG + R + ++L ++DG +
Sbjct: 259 DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDS-NSGGEREIQRTMLELLNQLDGFD 317
Query: 785 DSSQDLFIIGASNRPDLIDPALLRPGRFD-KLLYVGVNSDVSYRERVLKALTRKFKLLED 843
D D+ +I A+N+ + +DPAL+RPGR D K+L+ N D+S ++++L T K L ED
Sbjct: 318 DRG-DVKVIMATNKIETLDPALIRPGRIDRKILF--ENPDLSTKKKILGIHTSKMNLSED 374
Query: 844 VSLYSIAKKCPPNFTGADMYALCADAWFHAAKRK 877
V+L ++ + +GAD+ A+C +A A + +
Sbjct: 375 VNLETLV-TTKDDLSGADIQAMCTEAGLLALRER 407
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 3/106 (2%)
Query: 366 NDFVPLQGDTVKILASILAPTLCPSV---LSLKFRVAVLLHGLPGCGKRTVVRYVARRLG 422
+D L+ +I S+ P P + + +K V+L+G PG GK + + VA +
Sbjct: 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS 241
Query: 423 IHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVF 468
+ L+ Q F A +P+I+ + + D
Sbjct: 242 ATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAI 287
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 149 bits (376), Expect = 8e-36, Method: Composition-based stats.
Identities = 80/184 (43%), Positives = 116/184 (63%), Gaps = 6/184 (3%)
Query: 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKA 739
G R GVLL GPPG GKT LA+AVA E + F++ G + + M++G VRD+F+ A
Sbjct: 45 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA 104
Query: 740 RSARPCVIFFDELDSLAPARGASGDSGGVMDR--VVSQMLAEIDGLNDSSQDLFIIGASN 797
+ PC++F DE+D++ RG SG GG +R ++Q+L E+DG + + ++ A+N
Sbjct: 105 KRHAPCIVFIDEIDAVGRKRG-SGVGGGNDEREQTLNQLLVEMDGFEKDTA-IVVMAATN 162
Query: 798 RPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNF 857
RPD++DPALLRPGRFD+ + + DV RE++L+ R L EDV L +AK+ P F
Sbjct: 163 RPDILDPALLRPGRFDRQIAIDA-PDVKGREQILRIHARGKPLAEDVDLALLAKRT-PGF 220
Query: 858 TGAD 861
GAD
Sbjct: 221 VGAD 224
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
VLL G PG GK + R VA + + S + + +A + F TA+ ++P
Sbjct: 51 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110
Query: 459 ILLLRDFD 466
I+ + + D
Sbjct: 111 IVFIDEID 118
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 149 bits (376), Expect = 8e-36, Method: Composition-based stats.
Identities = 80/184 (43%), Positives = 116/184 (63%), Gaps = 6/184 (3%)
Query: 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKA 739
G R GVLL GPPG GKT LA+AVA E + F++ G + + M++G VRD+F+ A
Sbjct: 69 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA 128
Query: 740 RSARPCVIFFDELDSLAPARGASGDSGGVMDR--VVSQMLAEIDGLNDSSQDLFIIGASN 797
+ PC++F DE+D++ RG SG GG +R ++Q+L E+DG + + ++ A+N
Sbjct: 129 KRHAPCIVFIDEIDAVGRKRG-SGVGGGNDEREQTLNQLLVEMDGFEKDTA-IVVMAATN 186
Query: 798 RPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNF 857
RPD++DPALLRPGRFD+ + + DV RE++L+ R L EDV L +AK+ P F
Sbjct: 187 RPDILDPALLRPGRFDRQIAIDA-PDVKGREQILRIHARGKPLAEDVDLALLAKRT-PGF 244
Query: 858 TGAD 861
GAD
Sbjct: 245 VGAD 248
Score = 30.4 bits (67), Expect = 5.4, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
VLL G PG GK + R VA + + S + + +A + F TA+ ++P
Sbjct: 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134
Query: 459 ILLLRDFD 466
I+ + + D
Sbjct: 135 IVFIDEID 142
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 149 bits (375), Expect = 9e-36, Method: Composition-based stats.
Identities = 80/198 (40%), Positives = 118/198 (59%), Gaps = 4/198 (2%)
Query: 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKA 739
G + GVLL GPPGTGKTLLAKAVA E + F S+ G I M++G VRD+F+ A
Sbjct: 40 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETA 99
Query: 740 RSARPCVIFFDELDSLAPARGASGDSGGVMDR--VVSQMLAEIDGLNDSSQDLFIIGASN 797
+ P +IF DE+D++ +R A G G +R ++Q+LAE+DG + + ++ A+N
Sbjct: 100 KKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATN 159
Query: 798 RPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNF 857
RP+++DPAL+RPGRFD+ + V D + R +LK + KL DV+L +A K
Sbjct: 160 RPEILDPALMRPGRFDRQVLVD-KPDFNGRVEILKVHIKGVKLANDVNLQEVA-KLTAGL 217
Query: 858 TGADMYALCADAWFHAAK 875
GAD+ + +A A +
Sbjct: 218 AGADLANIINEAALLAGR 235
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 52/237 (21%), Positives = 95/237 (40%), Gaps = 30/237 (12%)
Query: 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNT 451
L K VLL G PG GK + + VA + + + ++ + F T
Sbjct: 39 LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFET 98
Query: 452 AQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYF 511
A+ +P+I+ + + D +G S V+ S DE E++
Sbjct: 99 AKKQAPSIIFIDEIDA--------------IGKSRAAGGVV------SGNDEREQTLNQL 138
Query: 512 PVKEIEKICRQQ--VLLVAAADSSEGLPPTIRRC--FSHEISMGPLTEQQRVEMLSQLLQ 567
+ E++ + V+++AA + E L P + R F ++ + RVE+L ++
Sbjct: 139 -LAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197
Query: 568 PVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGES 624
V +L +D +E K T+G DL ++ +A R + EV + E+
Sbjct: 198 GV-KLANDVNLQEVAK----LTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEA 249
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 160/321 (49%), Gaps = 23/321 (7%)
Query: 561 MLSQLLQPVSE---LTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVD 617
++ Q L+P+ + + S T +V I+ D L L R SN+ VD
Sbjct: 95 VIGQFLEPIDQNTGIVSSTTGMSYVVRILSTL------DRELLKPSMSVALHRHSNALVD 148
Query: 618 KNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLF 677
P + + N+ + V G + M++ + R A +LPL+ DL+
Sbjct: 149 ILPPDSDSSISVMGENEKPDVTYADVGGLD-----MQKQEIREAV-----ELPLVQADLY 198
Query: 678 SS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIF 736
G+ GVLLYGPPGTGKT+L KAVA F+ V G E ++ Y+GE + VRD+F
Sbjct: 199 EQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVF 258
Query: 737 QKARSARPCVIFFDELDSLAPAR-GASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGA 795
+ AR P +IF DE+DS+A R A S + R++ ++L ++DG D S ++ +I A
Sbjct: 259 RLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF-DQSTNVKVIMA 317
Query: 796 SNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPP 855
+NR D +DPALLRPGR D+ + D R + + K L + L S+ +
Sbjct: 318 TNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRN-D 376
Query: 856 NFTGADMYALCADAWFHAAKR 876
+ +GA + A+ +A A ++
Sbjct: 377 SLSGAVIAAIMQEAGLRAVRK 397
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 140/258 (54%), Gaps = 28/258 (10%)
Query: 668 KLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIG 726
+LPL + ++F G++ GVLLYGPPGTGKTLLAKAVA NF+ +++ YIG
Sbjct: 198 ELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIG 257
Query: 727 ESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGG-VMDRVVSQMLAEIDGLND 785
ES + +R++F A+ PC+IF DE+D++ R + G S + R + ++L ++DG ++
Sbjct: 258 ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317
Query: 786 SSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVS 845
Q I+ A+NRPD +DPALLRPGR D+ + + + ++ R + K T K K +
Sbjct: 318 LGQTKIIM-ATNRPDTLDPALLRPGRLDRKVEIPLPNEAG-RLEIFKIHTAKVKKTGEFD 375
Query: 846 LYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLXXXXXXXXXRIDQADSVVVEYDDFVK 905
+ A K F GAD+ +A F A + D D + DD +K
Sbjct: 376 -FEAAVKMSDGFNGADIRNCATEAGFFAIR---------------DDRDH--INPDDLMK 417
Query: 906 VLRELSPSLSMAELKKYE 923
+R++ AE+KK E
Sbjct: 418 AVRKV------AEVKKLE 429
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 34/70 (48%)
Query: 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458
VLL+G PG GK + + VA +G + + ++ +++ + + F A+ + P
Sbjct: 217 GVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPC 276
Query: 459 ILLLRDFDVF 468
I+ + + D
Sbjct: 277 IIFMDEVDAI 286
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 122/207 (58%), Gaps = 5/207 (2%)
Query: 669 LPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGE 727
LP+ D F G+R G L+YGPPGTGKTLLA+A A + + FL + P+L+ MYIGE
Sbjct: 199 LPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGE 258
Query: 728 SEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGG-VMDRVVSQMLAEIDGLNDS 786
K VRD F A+ P +IF DELD++ R S SG + R + ++L ++DG + S
Sbjct: 259 GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS-S 317
Query: 787 SQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSL 846
+ ++ A+NR D++DPALLR GR D+ + + S+ S R ++L+ +RK +D++
Sbjct: 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDS-RAQILQIHSRKMTTDDDINW 376
Query: 847 YSIAKKCPPNFTGADMYALCADAWFHA 873
+A+ F GA + A+ +A A
Sbjct: 377 QELARST-DEFNGAQLKAVTVEAGMIA 402
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 139 bits (350), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 121/199 (60%), Gaps = 5/199 (2%)
Query: 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKA 739
G + G LL GPPG GKTLLAKAVATE + FL++ G E + + G VR +F++A
Sbjct: 35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEA 94
Query: 740 RSARPCVIFFDELDSLAPARGA--SGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASN 797
R+ PC+++ DE+D++ R SG S ++ ++Q+L E+DG+ ++ + ++ ++N
Sbjct: 95 RARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG-TTDHVIVLASTN 153
Query: 798 RPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIA-KKCPPN 856
R D++D AL+RPGR D+ +++ + + + R + + + KL + + YS + P
Sbjct: 154 RADILDGALMRPGRLDRHVFIDLPT-LQERREIFEQHLKSLKLTQSSTFYSQRLAELTPG 212
Query: 857 FTGADMYALCADAWFHAAK 875
F+GAD+ +C +A HAA+
Sbjct: 213 FSGADIANICNEAALHAAR 231
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 136 bits (342), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 136/263 (51%), Gaps = 13/263 (4%)
Query: 669 LPLLHKDLFSSGLR-KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGE 727
P+L D+F+ GLR G+LL+GPPGTGKTL+ K +A++ F S+ L + ++GE
Sbjct: 102 WPMLRPDIFT-GLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGE 160
Query: 728 SEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSS 787
EK VR +F AR +P VIF DE+DSL RG R+ ++ L ++DG SS
Sbjct: 161 GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESS--RRIKTEFLVQLDGATTSS 218
Query: 788 QD-LFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSL 846
+D + ++GA+NRP ID A R R K LY+ + + ++ V+ ++++ L + +
Sbjct: 219 EDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEI 276
Query: 847 YSIAKKCPPNFTGADMYALCADAWFHAAKRKVLXXXXXXXXXRIDQADSVVVEYDDFVKV 906
I ++ F+GADM LC +A + DQ + Y DF
Sbjct: 277 EQIVQQS-DAFSGADMTQLCREASLGPIRS---LQTADIATITPDQVRPIA--YIDFENA 330
Query: 907 LRELSPSLSMAELKKYELLRDQF 929
R + PS+S +L+ YE F
Sbjct: 331 FRTVRPSVSPKDLELYENWNKTF 353
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 125 bits (315), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 99/150 (66%), Gaps = 4/150 (2%)
Query: 669 LPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGES 728
LP+ LF + SG+LLYGPPGTGK+ LAKAVATE + F SV +L++ ++GES
Sbjct: 45 LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 104
Query: 729 EKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQ 788
EK V+ +F AR +P +IF DE+D+L RG G+S R+ +++L +++G+ + SQ
Sbjct: 105 EKLVKQLFAMARENKPSIIFIDEVDALTGTRG-EGESEASR-RIKTELLVQMNGVGNDSQ 162
Query: 789 DLFIIGASNRPDLIDPALLRPGRFDKLLYV 818
+ ++GA+N P +D A+ R RF++ +Y+
Sbjct: 163 GVLVLGATNIPWQLDSAIRR--RFERRIYI 190
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Query: 367 DFVPLQGDTVKILASILAPTLCPSVL--SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH 424
D L+G + +++ P P + + K +LL+G PG GK + + VA
Sbjct: 28 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST 87
Query: 425 VVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVF 468
S +L++ ++ + Q F A+ P+I+ + + D
Sbjct: 88 FFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDAL 131
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 99/150 (66%), Gaps = 4/150 (2%)
Query: 669 LPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGES 728
LP+ LF + SG+LLYGPPGTGK+ LAKAVATE + F SV +L++ ++GES
Sbjct: 69 LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 128
Query: 729 EKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQ 788
EK V+ +F AR +P +IF D++D+L RG G+S R+ +++L +++G+ + SQ
Sbjct: 129 EKLVKQLFAMARENKPSIIFIDQVDALTGTRG-EGESEASR-RIKTELLVQMNGVGNDSQ 186
Query: 789 DLFIIGASNRPDLIDPALLRPGRFDKLLYV 818
+ ++GA+N P +D A+ R RF++ +Y+
Sbjct: 187 GVLVLGATNIPWQLDSAIRR--RFERRIYI 214
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 367 DFVPLQGDTVKILASILAPTLCPSVL--SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH 424
D L+G + +++ P P + + K +LL+G PG GK + + VA
Sbjct: 52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST 111
Query: 425 VVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVF 468
S +L++ ++ + Q F A+ P+I+ + D
Sbjct: 112 FFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDAL 155
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 99/150 (66%), Gaps = 4/150 (2%)
Query: 669 LPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGES 728
LP+ LF + SG+LLYGPPGTGK+ LAKAVATE + F SV +L++ ++GES
Sbjct: 36 LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 95
Query: 729 EKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQ 788
EK V+ +F AR +P +IF D++D+L RG G+S R+ +++L +++G+ + SQ
Sbjct: 96 EKLVKQLFAMARENKPSIIFIDQVDALTGTRG-EGESEASR-RIKTELLVQMNGVGNDSQ 153
Query: 789 DLFIIGASNRPDLIDPALLRPGRFDKLLYV 818
+ ++GA+N P +D A+ R RF++ +Y+
Sbjct: 154 GVLVLGATNIPWQLDSAIRR--RFERRIYI 181
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 367 DFVPLQGDTVKILASILAPTLCPSVL--SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH 424
D L+G + +++ P P + + K +LL+G PG GK + + VA
Sbjct: 19 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST 78
Query: 425 VVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVF 468
S +L++ ++ + Q F A+ P+I+ + D
Sbjct: 79 FFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDAL 122
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 99/150 (66%), Gaps = 4/150 (2%)
Query: 669 LPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGES 728
LP+ LF + SG+LLYGPPGTGK+ LAKAVATE + F SV +L++ ++GES
Sbjct: 54 LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 113
Query: 729 EKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQ 788
EK V+ +F AR +P +IF D++D+L RG G+S R+ +++L +++G+ + SQ
Sbjct: 114 EKLVKQLFAMARENKPSIIFIDQVDALTGTRG-EGESEASR-RIKTELLVQMNGVGNDSQ 171
Query: 789 DLFIIGASNRPDLIDPALLRPGRFDKLLYV 818
+ ++GA+N P +D A+ R RF++ +Y+
Sbjct: 172 GVLVLGATNIPWQLDSAIRR--RFERRIYI 199
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 367 DFVPLQGDTVKILASILAPTLCPSVL--SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH 424
D L+G + +++ P P + + K +LL+G PG GK + + VA
Sbjct: 37 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST 96
Query: 425 VVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVF 468
S +L++ ++ + Q F A+ P+I+ + D
Sbjct: 97 FFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDAL 140
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 122 bits (306), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 116/204 (56%), Gaps = 9/204 (4%)
Query: 669 LPLLHKDLFSSGLRKRS-GVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGE 727
LP + +LF+ GLR + G+LL+GPPG GKTLLA+AVATECS FL++ L + Y+G+
Sbjct: 39 LPSVRPELFT-GLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGD 97
Query: 728 SEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL--ND 785
EK VR +F AR +P +IF DE+DSL R +S R+ ++ L E DGL N
Sbjct: 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEAS--RRLKTEFLVEFDGLPGNP 155
Query: 786 SSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVS 845
+ ++ A+NRP +D A LR RF K +YV + D RE +L L +K D
Sbjct: 156 DGDRIVVLAATNRPQELDEAALR--RFTKRVYVSL-PDEQTRELLLNRLLQKQGSPLDTE 212
Query: 846 LYSIAKKCPPNFTGADMYALCADA 869
K ++G+D+ AL DA
Sbjct: 213 ALRRLAKITDGYSGSDLTALAKDA 236
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 119 bits (298), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 136/257 (52%), Gaps = 15/257 (5%)
Query: 669 LPLLHKDLFSSGLRKRS-GVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGE 727
LP L +LF+ GLR + G+LL+GPPG GKT+LAKAVA E + F ++ L + Y+GE
Sbjct: 133 LPSLRPELFT-GLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGE 191
Query: 728 SEKNVRDIFQKARSARPCVIFFDELDS-LAPARGASGDSGGVMDRVVSQMLAEIDGLNDS 786
EK VR +F AR +P +IF D++DS L R D+ R+ ++ L E DG+ +
Sbjct: 192 GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDAS---RRLKTEFLIEFDGVQSA 248
Query: 787 SQD-LFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVS 845
D + ++GA+NRP +D A+LR RF K +YV + ++ + + L ++ L
Sbjct: 249 GDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKE 306
Query: 846 LYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLXXXXXXXXXRIDQADSVVVEYDDFVK 905
L +A+ ++G+D+ AL DA + + ++ + DF +
Sbjct: 307 LAQLARMT-DGYSGSDLTALAKDAALGP-----IRELKPEQVKNMSASEMRNIRLSDFTE 360
Query: 906 VLRELSPSLSMAELKKY 922
L+++ S+S L+ Y
Sbjct: 361 SLKKIKRSVSPQTLEAY 377
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 96/151 (63%), Gaps = 5/151 (3%)
Query: 669 LPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS-LNFLSVKGPELINMYIGE 727
LP+ LF+ G+LL+GPPGTGK+ LAKAVATE + F S+ +L++ ++GE
Sbjct: 152 LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGE 211
Query: 728 SEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSS 787
SEK V+++FQ AR +P +IF DE+DSL +R S + R+ ++ L ++ G+ +
Sbjct: 212 SEKLVKNLFQLARENKPSIIFIDEIDSLCGSR--SENESEAARRIKTEFLVQMQGVGVDN 269
Query: 788 QDLFIIGASNRPDLIDPALLRPGRFDKLLYV 818
+ ++GA+N P ++D A+ R RF+K +Y+
Sbjct: 270 DGILVLGATNIPWVLDSAIRR--RFEKRIYI 298
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 115/209 (55%), Gaps = 6/209 (2%)
Query: 669 LPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS-LNFLSVKGPELINMYIGE 727
LP+ LF+ G+LL+GPPGTGK+ LAKAVATE + F S+ +L++ ++GE
Sbjct: 30 LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGE 89
Query: 728 SEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSS 787
SEK V+++FQ AR +P +IF DE+DSL +R S + R+ ++ L ++ G+ +
Sbjct: 90 SEKLVKNLFQLARENKPSIIFIDEIDSLCGSR--SENESEAARRIKTEFLVQMQGVGVDN 147
Query: 788 QDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLY 847
+ ++GA+N P ++D A+ R RF+K +Y+ + + L L +
Sbjct: 148 DGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFR 205
Query: 848 SIAKKCPPNFTGADMYALCADAWFHAAKR 876
+ +K ++GAD+ + DA ++
Sbjct: 206 ELGRKT-DGYSGADISIIVRDALMQPVRK 233
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 647 EDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVAT 706
+D V E++KK A A+ L + D + +S +LL GP G+GKTLLA+ +A
Sbjct: 14 DDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73
Query: 707 ECSLNFLSVKGPELINM-YIGESEKN-VRDIFQK----ARSARPCVIFFDELDSLA 756
+ F L Y+GE +N ++ + QK + A+ +++ D++D ++
Sbjct: 74 LLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 647 EDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVAT 706
+D V E++KK A A+ L + D + +S +LL GP G+GKTLLA+ +A
Sbjct: 14 DDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73
Query: 707 ECSLNFLSVKGPELINM-YIGESEKN-VRDIFQK----ARSARPCVIFFDELDSLA 756
+ F L Y+GE +N ++ + QK + A+ +++ D++D ++
Sbjct: 74 LLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 21/111 (18%)
Query: 674 KDLFSSGLRKRSGV----LLYGPPGTGKTLLAKAVATECSLNFLS-----VKGPELINMY 724
K+ F + SGV +LYGPPG GKT A VA E + L V+ L+N
Sbjct: 63 KNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAG 122
Query: 725 IGESEKN--VRDIFQKARSA-----RPCVIFFDELDSLAPARGASGDSGGV 768
+ + N V F+ A + VI DE+D + + GD GGV
Sbjct: 123 VKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGM-----SGGDRGGV 168
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427
FR A +L+G PG GK T VA+ LG ++E
Sbjct: 77 FRAA-MLYGPPGIGKTTAAHLVAQELGYDILE 107
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746
+LL+GPPG GKT LA +A E +N GP + E ++ I + +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLE-EGDI 93
Query: 747 IFFDELDSL---APARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID 803
+F DE+ L A VMD V+ Q A + +IGA+ RP LI
Sbjct: 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPA-ARTIRLELPRFTLIGATTRPGLIT 152
Query: 804 -PALLRPGRFDKLLY 817
P L R G + L Y
Sbjct: 153 APLLSRFGIVEHLEY 167
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746
+LL+GPPG GKT LA +A E +N GP + E ++ I + +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLE-EGDI 93
Query: 747 IFFDELDSL---APARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID 803
+F DE+ L A VMD V+ Q A + +IGA+ RP LI
Sbjct: 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPA-ARTIRLELPRFTLIGATTRPGLIT 152
Query: 804 -PALLRPGRFDKLLY 817
P L R G + L Y
Sbjct: 153 APLLSRFGIVEHLEY 167
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIGESEKNVRDIFQKA--- 739
+S +LL GP G+GKTL+A+ +A + L Y+GE +N+ +A
Sbjct: 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 131
Query: 740 --RSARPCVIFFDELDSLA 756
+ A+ ++F DE+D ++
Sbjct: 132 NVQKAQKGIVFIDEIDKIS 150
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746
+LL+GPPG GKT LA +A E +N GP + E ++ I + +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEEG-DI 93
Query: 747 IFFDELDSL---APARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID 803
+F DE+ L A VMD V+ Q A + +IGA+ RP LI
Sbjct: 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPA-ARTIRLELPRFTLIGATTRPGLIT 152
Query: 804 -PALLRPGRFDKLLY 817
P L R G + L Y
Sbjct: 153 APLLSRFGIVEHLEY 167
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746
VLL GPPG GKT LA +A+E N GP L+ + ++ I R V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTSLE--RGDV 105
Query: 747 IFFDELDSLAPA 758
+F DE+ L A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKAR----SA 742
++L+GPPGTGKT LA+ +A + + + + K +R+ ++AR +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAG 105
Query: 743 RPCVIFFDEL 752
R ++F DE+
Sbjct: 106 RRTILFVDEV 115
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746
VLL GPPG GKT LA +A+E N GP L+ + ++ I R V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTSLE--RGDV 105
Query: 747 IFFDELDSLAPA 758
+F DE+ L A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746
VLL GPPG GKT LA +A+E N GP L+ + ++ I R V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTSLE--RGDV 105
Query: 747 IFFDELDSLAPA 758
+F DE+ L A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746
VLL GPPG GKT LA +A+E N GP L+ + ++ I R V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTSLE--RGDV 105
Query: 747 IFFDELDSLAPA 758
+F DE+ L A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746
VLL GPPG GKT LA +A+E N GP L+ + ++ I R V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTSLE--RGDV 105
Query: 747 IFFDELDSLAPA 758
+F DE+ L A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESE----KNVRDIFQKARSA 742
VLL GPP +GKT LA +A E + F+ + P+ + IG SE + ++ IF A +
Sbjct: 66 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM---IGFSETAKCQAMKKIFDDAYKS 122
Query: 743 RPCVIFFDELDSL 755
+ + D+++ L
Sbjct: 123 QLSCVVVDDIERL 135
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESE----KNVRDIFQKARSA 742
VLL GPP +GKT LA +A E + F+ + P+ + IG SE + ++ IF A +
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM---IGFSETAKCQAMKKIFDDAYKS 123
Query: 743 RPCVIFFDELDSL 755
+ + D+++ L
Sbjct: 124 QLSCVVVDDIERL 136
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIG-ESEKNVRDIFQKARSA-- 742
+L+ GP G GKT +A+ +A + F+ V+ + + Y+G E + +RD+ A A
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAID 112
Query: 743 ---RPCVIFFDELDSLAPARGASG 763
+ ++F DE+D + SG
Sbjct: 113 AVEQNGIVFIDEIDKICKKGEYSG 136
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746
VLL GPPG G+T LA +A+E N GP L+ + ++ I R V
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTSLE--RGDV 105
Query: 747 IFFDELDSLAPA 758
+F DE+ L A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 15/101 (14%)
Query: 682 RKRSGVLLYGPPGTGKTLLAKAVA------------TECSLNFLSVKGPELINMYIGESE 729
R+++ LL G G GKT +A+ +A +C++ L + Y G+ E
Sbjct: 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 264
Query: 730 KNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMD 770
K + + ++ ++F DE+ ++ GA SGG +D
Sbjct: 265 KRFKALLKQLEQDTNSILFIDEIHTII---GAGAASGGQVD 302
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 41/181 (22%)
Query: 682 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFL--SVKGPELINM----------YIGESE 729
R ++ +L G PG GKT + + +A + +KG ++++ Y GE E
Sbjct: 52 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFE 111
Query: 730 KNVRDIFQK-ARSARPCVIFFDELDSLAPARGASG--DSGGVMDRVVSQMLAEIDGLNDS 786
+ ++ + Q+ +S ++F DEL ++ A A G D+G ++ +++
Sbjct: 112 ERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR----------- 160
Query: 787 SQDLFIIGASN----RPDLIDPALLRPGRFDKLLYVG---VNSDVSYRERVLKALTRKFK 839
+L +IGA+ R DPAL R RF + +YV V +S +L+ L K++
Sbjct: 161 -GELRLIGATTLDEYREIEKDPALER--RF-QPVYVDEPTVEETIS----ILRGLKEKYE 212
Query: 840 L 840
+
Sbjct: 213 V 213
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 687 VLLYGPPGTGKTLLAKAVATE--CSLNFLSVKGPELINMYIGESE 729
VLL GPPGTGKT LA A+A E + F + G E+ + I ++E
Sbjct: 66 VLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE 110
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 682 RKRSG--VLLYGPPGTGKTLLAKAVATECS--LNFLSVKGPELINMYIGESE 729
+K +G VLL GPPGTGKT LA A+A E + F G E+ + I ++E
Sbjct: 73 KKXAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTE 124
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 41/187 (21%)
Query: 682 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFL--SVKGPELINM----------YIGESE 729
R ++ +L G PG GKT + + +A + +KG ++++ Y GE E
Sbjct: 189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFE 248
Query: 730 KNVRDIFQK-ARSARPCVIFFDELDSLAPARGASG--DSGGVMDRVVSQMLAEIDGLNDS 786
+ ++ + Q+ +S ++F DEL ++ A A G D+G ++ +++
Sbjct: 249 ERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR----------- 297
Query: 787 SQDLFIIGASN----RPDLIDPALLRPGRFDKLLYVG---VNSDVSYRERVLKALTRKFK 839
+L +IGA+ R DPAL R RF +YV V +S +L+ L K++
Sbjct: 298 -GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETIS----ILRGLKEKYE 349
Query: 840 LLEDVSL 846
+ V +
Sbjct: 350 VHHGVRI 356
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 32/132 (24%)
Query: 642 QVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLA 701
+V+G+++ ++A+ + +R + L P P+ L GP G GKT LA
Sbjct: 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPI-------------GSFLFLGPTGVGKTELA 605
Query: 702 KAVAT---ECSLNFLSVKGPELINM------------YIGESEKNVRDIFQKARSARP-C 745
K +A + + + E + Y+G E +A RP
Sbjct: 606 KTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQ---LTEAVRRRPYS 662
Query: 746 VIFFDELDSLAP 757
VI FDE++ P
Sbjct: 663 VILFDEIEKAHP 674
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 39/152 (25%)
Query: 636 SSIAATQVMGKEDLVKAMERSKKRNASALGAPK--LPLLHKDLFSSGLRKRSGVLLYGPP 693
S +AA Q + ++ V E+ + +N + A + +L K L S+ L +L YGPP
Sbjct: 14 SKLAAEQSLAQQPWV---EKYRPKNLDEVTAQDHAVTVLKKTLKSANL---PHMLFYGPP 67
Query: 694 GTGKTLLAKAVATECSLNFLSVKGPELINMYIGE----SEKNVRDIFQKARS-AR----- 743
GTGKT A+ E + GP+L+ I E E+ + + +K ++ AR
Sbjct: 68 GTGKTSTILALTKE-------LYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSK 120
Query: 744 ---------PC----VIFFDELDSL-APARGA 761
PC +I DE DS+ A A+ A
Sbjct: 121 PSKHDLENYPCPPYKIIILDEADSMTADAQSA 152
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 673 HKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL 710
H+ +F L + G++L GPPG+GKT++ SL
Sbjct: 1037 HEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSL 1074
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 673 HKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL 710
H+ +F L + G++L GPPG+GKT++ SL
Sbjct: 1256 HEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSL 1293
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 673 HKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATE------CSLNFLSVKGPELI 721
H D+ + L + ++L GPPG+GKT+ + SLNF S PEL+
Sbjct: 1293 HVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELL 1347
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 673 HKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATE------CSLNFLSVKGPELI 721
H D+ + L + ++L GPPG+GKT+ + SLNF S PEL+
Sbjct: 1293 HVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELL 1347
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 16/111 (14%)
Query: 682 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFL--SVKGPELINM----------YIGESE 729
R ++ +L G PG GKT + + +A + + S+KG +L+++ Y G+ E
Sbjct: 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFE 100
Query: 730 KNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMD--RVVSQMLA 778
+ ++ I ++ + A V+ F +D + GA + G +D ++ MLA
Sbjct: 101 ERLKSILKEVQDAEGQVVMF--IDEIHTVVGAGAVAEGALDAGNILKPMLA 149
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Query: 682 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI-----------NMYIGESEK 730
R ++ +L G PG GKT +A+ +A + N + PE++ Y GE E
Sbjct: 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMGTKYRGEFED 254
Query: 731 NVRDIFQKARSARPCVIFFD 750
++ + + R A ++F D
Sbjct: 255 RLKKVMDEIRQAGNIILFID 274
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Query: 682 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI-----------NMYIGESEK 730
R ++ +L G PG GKT +A+ +A + N + PE++ Y GE E
Sbjct: 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMGTKYRGEFED 254
Query: 731 NVRDIFQKARSARPCVIFFD 750
++ + + R A ++F D
Sbjct: 255 RLKKVMDEIRQAGNIILFID 274
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 675 DLFSSGLRKRS----GVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEK 730
++F + +KR+ +L GP G GKT LA ++ E S N + P + E
Sbjct: 42 NVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEXSANIKTTAAPXI------EKSG 95
Query: 731 NVRDIFQKARSARPCVIFFDELDSLAPA 758
++ I ++F DE+ L+PA
Sbjct: 96 DLAAILTNLSEGD--ILFIDEIHRLSPA 121
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 675 DLFSSGLRKRSGVLLYGPPGTGKTLLAKAVA----TECSLNFLSVKGPELINM 723
++ + ++ VLL G PGTGK++L +A+A TE + L PE NM
Sbjct: 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM 103
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 689 LYGPPGTGKTLLAKAVATECSLNFL-----------SVKGPELINMYIGESEKNVRDIFQ 737
L GPPG GKT LAK++A F+ ++G Y+G + +
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHR--RTYVGAMPGRIIQGMK 170
Query: 738 KARSARPCVIFFDELDSLA 756
KA P V DE+D ++
Sbjct: 171 KAGKLNP-VFLLDEIDKMS 188
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 669 LPLLHKDLFSSGLRKRS--GVLLYGP-PGTGKTLLAKAVATECSLNFLSVKGPELINMYI 725
LP K+ F S K ++L+ P PGTGKT +AKA+ + + + + V G + ++
Sbjct: 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFV 89
Query: 726 GESEKNVRDIFQKARS--ARPCVIFFDELD 753
N F A S R VI DE D
Sbjct: 90 RGPLTN----FASAASFDGRQKVIVIDEFD 115
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 32.7 bits (73), Expect = 0.88, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 12/52 (23%)
Query: 664 LGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 715
LG+P+ LL +LL G PG GKT L K +A++ L +++V
Sbjct: 3 LGSPEFMLL------------PNILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLN--FLSVKGPELINMYIGESEKNV----RDIFQKAR 740
VL+ G PGTGKT +A +A + F ++ G E+ ++ + ++E R I + +
Sbjct: 73 VLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIK 132
Query: 741 SARPCVIFFDELDSL-APARG----ASGDSGGVMDRVVSQMLAEI 780
+ + E+D + + +G SGD+G + V Q+ A++
Sbjct: 133 AGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKV 177
>pdb|2JK0|A Chain A, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|B Chain B, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|C Chain C, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|D Chain D, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|E Chain E, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|F Chain F, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|G Chain G, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|H Chain H, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
Length = 325
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 250 IPECGTLESLKGS--SAIEAEDRQEKIDLALHNYFEVDRYLARGDVFSVCINWNCSSMIC 307
+PE TL ++KG ++I +E+ + L L V+ LAR DV V I ++
Sbjct: 41 VPELKTLANIKGEQVASIGSENMTSDVLLTLSK--RVNELLARSDVDGVVITHGTDTLDE 98
Query: 308 IPCRQRLHRRSDNIIYFKVVAVEPS 332
P L +SD + F V A+ P+
Sbjct: 99 SPYFLNLTVKSDKPVVF-VAAMRPA 122
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 15/82 (18%)
Query: 687 VLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELINMYIGESEKNVRDIF 736
+L YGPPGTGKT A+A E LN +G +++ I + + R IF
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDF-ASTRQIF 107
Query: 737 QKARSARPCVIFFDELDSLAPA 758
K +I DE D++ A
Sbjct: 108 SKGFK----LIILDEADAMTNA 125
>pdb|1ZCF|A Chain A, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|B Chain B, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|C Chain C, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|D Chain D, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|E Chain E, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|F Chain F, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|G Chain G, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|H Chain H, L-Asparaginase From Erwinia Carotovora
pdb|2GVN|A Chain A, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|B Chain B, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|C Chain C, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|D Chain D, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|E Chain E, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|F Chain F, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|G Chain G, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|H Chain H, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2HLN|A Chain A, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|B Chain B, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|E Chain E, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|F Chain F, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|C Chain C, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|D Chain D, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|G Chain G, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|H Chain H, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|I Chain I, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|J Chain J, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|K Chain K, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|L Chain L, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
Length = 327
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 250 IPECGTLESLKGS--SAIEAEDRQEKIDLALHNYFEVDRYLARGDVFSVCINWNCSSMIC 307
+PE TL ++KG ++I +E+ + L L V+ LAR DV V I ++
Sbjct: 43 VPELKTLANIKGEQVASIGSENMTSDVLLTLSK--RVNELLARSDVDGVVITHGTDTLDE 100
Query: 308 IPCRQRLHRRSDNIIYFKVVAVEPS 332
P L +SD + F V A+ P+
Sbjct: 101 SPYFLNLTVKSDKPVVF-VAAMRPA 124
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSV 715
+LL G PG GKT L K +A++ L +++V
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 367 DFVPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL 421
D +P + ++ LA +LAP L S LL+GL G GK V R V RRL
Sbjct: 19 DVLPHREAELRRLAEVLAPALRGEKPS-----NALLYGLTGTGKTAVARLVLRRL 68
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 367 DFVPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL 421
D +P + D ++ +ASILAP + + ++GL G GK VV++V +L
Sbjct: 20 DELPHREDQIRKIASILAPLYREEKPN-----NIFIYGLTGTGKTAVVKFVLSKL 69
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLN--FLSVKGPELINMYIGESEKNV----RDIFQKAR 740
VL+ G PGTGKT +A A + F ++ G E+ ++ ++E R I + +
Sbjct: 88 VLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAFRRSIGVRIK 147
Query: 741 SARPCVIF---FDELDSLAPARGA-----SGDSGGVMDRVVSQMLAEI 780
P V+ E+D + SGD+G + V Q+ A++
Sbjct: 148 EGPPGVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKV 195
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 67/170 (39%), Gaps = 43/170 (25%)
Query: 687 VLLYGPPGTGKTLLAKAVATE-----CSLNFLSVKGPELINMYIGESEKNVRDIFQKARS 741
+L GPPG GKT A A+A E NFL + + + + +R+ ++
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINV------IREKVKEFAR 102
Query: 742 ARPC------VIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGA 795
+P +IF DE D+L + D+ + R + SS FI+
Sbjct: 103 TKPIGGASFKIIFLDEADAL------TQDAQQALRRTMEMF---------SSNVRFILSC 147
Query: 796 SNRPDLIDPA-------LLRPGRFD----KLLYVGVNSDVSYRERVLKAL 834
+ +I+P RP R + +L Y+ N + E L+A+
Sbjct: 148 NYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAI 197
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIG-ESEKNVRDIFQKA 739
+L+ GP G GKT +A+ +A + F+ V+ + + Y+G E + +RD+ A
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|4D8O|A Chain A, Crystal Structure Of The Ankyrin-B Zu5-Zu5-Upa-Dd Tandem
Length = 581
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 164 PQDDMELLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKA 223
PQD+ E ++ ++AY++ L F+ L F Q ++ ++++ S QD
Sbjct: 490 PQDEQERIEERLAYIADHLGFSWTELARELDFTEEQIHQI-------RIENPNSLQDQSH 542
Query: 224 SLIKLGLQSVGQ 235
+L+K L+ G+
Sbjct: 543 ALLKYWLERDGK 554
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIG-ESEKNVRDIFQKA 739
+L+ GP G GKT +A+ +A + F+ V+ + + Y+G E + +RD+ A
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 107
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 642 QVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLA 701
+V+G+++ ++A+ + +R + L P P+ L GP G GKT LA
Sbjct: 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPI-------------GSFLFLGPTGVGKTELA 64
Query: 702 KAVA 705
K +A
Sbjct: 65 KTLA 68
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 642 QVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLA 701
+V+G+++ ++A+ + +R + L P P+ L GP G GKT LA
Sbjct: 15 RVVGQDEAIRAVADAIRRARAGLKDPNRPI-------------GSFLFLGPTGVGKTELA 61
Query: 702 KAVA 705
K +A
Sbjct: 62 KTLA 65
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIG-ESEKNVRDIFQKA 739
+L+ GP G GKT +A+ +A + F+ V+ + + Y+G E + +RD+ A
Sbjct: 52 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 106
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIG-ESEKNVRDIFQKA 739
+L+ GP G GKT +A+ +A + F+ V+ + + Y+G E + +RD+ A
Sbjct: 59 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 113
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 691 GPPGTGKTLLAKAVATECSL-------NFLSVKGPELINMYIGESEKNVRDIFQKARSAR 743
G PGTGKT +A +A + +SV +L+ YIG + +++ ++A
Sbjct: 67 GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGG- 125
Query: 744 PCVIFFDE 751
V+F DE
Sbjct: 126 --VLFIDE 131
>pdb|4A15|A Chain A, Crystal Structure Of An Xpd Dna Complex
Length = 620
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 675 DLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS 709
D S L+K GV L P G+GKT++A A + S
Sbjct: 13 DFLRSSLQKSYGVALESPTGSGKTIMALKSALQYS 47
>pdb|2IYQ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And Adp
pdb|2IYR|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYR|B Chain B, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYS|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate, Open Lid (Conf. A)
pdb|2IYT|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Unliganded State, Open Lid (conf. A)
pdb|2IYU|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. A)
pdb|2IYV|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. B)
pdb|2IYW|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Mgatp, Open Lid (Conf. B)
pdb|2IYX|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And So4
pdb|2IYY|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And So4
pdb|2IYZ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And Adp
Length = 184
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 401 LLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNT 451
+L GLPG GK T+ R +A+ LG+ +++ + E++T ++A F T
Sbjct: 6 VLVGLPGSGKSTIGRRLAKALGVGLLDTDV-----AIEQRTGRSIADIFAT 51
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 691 GPPGTGKTLLAKAVATECSL-------NFLSVKGPELINMYIGESEKNVRDIFQKARSAR 743
G PGTGKT +A +A + +SV +L+ YIG + +++ ++A
Sbjct: 74 GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGG- 132
Query: 744 PCVIFFDE 751
V+F DE
Sbjct: 133 --VLFIDE 138
>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8
Angstrom Resolution
pdb|1L4Y|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp At 2.0 Angstrom
Resolution
pdb|1U8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Adp At 2.15
Angstrom Resolution
pdb|1WE2|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Shikimic Acid
pdb|1ZYU|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Amppcp At 2.85
Angstrom Resolution
pdb|2G1J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1J|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate At 1.75 Angstrom
Resolution
pdb|2DFN|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Shikimate At 1.9
Angstrons Of Resolution
pdb|2DFT|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|B Chain B, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|C Chain C, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|D Chain D, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|3BAF|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Amp-Pnp
Length = 176
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 401 LLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNT 451
+L GLPG GK T+ R +A+ LG+ +++ + E++T ++A F T
Sbjct: 6 VLVGLPGSGKSTIGRRLAKALGVGLLDTDV-----AIEQRTGRSIADIFAT 51
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 30.4 bits (67), Expect = 5.3, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 691 GPPGTGKTLLA-KAVATECSLNF------LSVKGPELINMYIGESEKNVRDIFQKARSAR 743
G PGTGKT +A K L + +SV +L+ YIG + +++ ++A
Sbjct: 74 GNPGTGKTTVALKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAXGG- 132
Query: 744 PCVIFFDE 751
V+F DE
Sbjct: 133 --VLFIDE 138
>pdb|2DR3|A Chain A, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|B Chain B, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|C Chain C, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|D Chain D, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|E Chain E, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|F Chain F, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
Length = 247
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 675 DLFSSGLRKRSGVLLYGPPGTGKTLLAK 702
++ G+ +R+ VLL G PGTGKT+ ++
Sbjct: 14 EILHGGIPERNVVLLSGGPGTGKTIFSQ 41
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIG-ESEKNVRDIFQKA 739
+L GP G GKT +A+ +A + F+ V+ + + Y+G E + +RD+ A
Sbjct: 53 ILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 29.3 bits (64), Expect = 9.5, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 682 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFL--SVKGPELINM----------YIGESE 729
R ++ +L G PG GKT + + +A + +KG ++ + Y GE E
Sbjct: 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFE 100
Query: 730 KNVRDIFQK-ARSARPCVIFFDELDSLAPARGASG--DSGGVM 769
+ ++ + A+ ++F DEL ++ A A G D+G ++
Sbjct: 101 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNML 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,078,530
Number of Sequences: 62578
Number of extensions: 989304
Number of successful extensions: 2914
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2677
Number of HSP's gapped (non-prelim): 200
length of query: 934
length of database: 14,973,337
effective HSP length: 108
effective length of query: 826
effective length of database: 8,214,913
effective search space: 6785518138
effective search space used: 6785518138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)