Query 002337
Match_columns 934
No_of_seqs 768 out of 4488
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 21:46:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0736 Peroxisome assembly fa 100.0 4E-115 1E-119 989.1 52.4 863 26-931 1-953 (953)
2 KOG0730 AAA+-type ATPase [Post 100.0 3E-100 7E-105 864.0 41.8 683 66-928 2-692 (693)
3 KOG0733 Nuclear AAA ATPase (VC 100.0 1.3E-97 3E-102 828.0 46.5 534 366-930 190-789 (802)
4 TIGR01243 CDC48 AAA family ATP 100.0 2E-75 4.3E-80 717.0 65.0 683 92-932 15-732 (733)
5 KOG0735 AAA+-type ATPase [Post 100.0 3.6E-68 7.8E-73 600.1 34.9 494 396-932 430-938 (952)
6 COG0464 SpoVK ATPases of the A 100.0 2E-56 4.3E-61 527.8 37.6 471 393-925 14-492 (494)
7 COG1222 RPT1 ATP-dependent 26S 100.0 1.2E-52 2.6E-57 447.6 21.1 246 643-912 147-394 (406)
8 KOG0738 AAA+-type ATPase [Post 100.0 6.5E-52 1.4E-56 443.2 20.6 281 642-931 207-490 (491)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 2.9E-47 6.2E-52 425.6 22.6 256 671-930 209-524 (802)
10 KOG0739 AAA+-type ATPase [Post 100.0 1.4E-44 2.9E-49 374.6 14.4 282 641-932 127-438 (439)
11 CHL00195 ycf46 Ycf46; Provisio 100.0 9.6E-42 2.1E-46 394.9 38.9 390 456-928 81-483 (489)
12 KOG0734 AAA+-type ATPase conta 100.0 3.6E-42 7.7E-47 379.3 19.1 218 671-910 323-541 (752)
13 KOG0728 26S proteasome regulat 100.0 7.3E-42 1.6E-46 346.6 18.1 228 668-915 164-393 (404)
14 COG1222 RPT1 ATP-dependent 26S 100.0 2.5E-40 5.5E-45 353.3 23.5 266 326-659 125-395 (406)
15 KOG0727 26S proteasome regulat 100.0 5.9E-41 1.3E-45 340.3 16.7 225 667-911 171-397 (408)
16 KOG0652 26S proteasome regulat 100.0 3.6E-40 7.8E-45 336.0 16.1 227 666-912 186-414 (424)
17 KOG0741 AAA+-type ATPase [Post 100.0 3.4E-40 7.4E-45 363.4 13.4 246 674-924 245-506 (744)
18 KOG0737 AAA+-type ATPase [Post 100.0 2.4E-39 5.2E-44 348.2 17.8 276 644-929 89-380 (386)
19 KOG0731 AAA+-type ATPase conta 100.0 2.9E-39 6.3E-44 378.8 19.9 221 671-911 330-554 (774)
20 KOG0726 26S proteasome regulat 100.0 9.1E-40 2E-44 337.7 12.8 224 667-910 201-426 (440)
21 KOG0729 26S proteasome regulat 100.0 8.3E-39 1.8E-43 326.8 14.7 224 668-912 194-420 (435)
22 PTZ00454 26S protease regulato 100.0 1.5E-37 3.3E-42 353.1 20.7 226 668-913 162-389 (398)
23 COG0465 HflB ATP-dependent Zn 100.0 1.3E-37 2.7E-42 360.2 18.8 220 671-910 169-390 (596)
24 KOG0741 AAA+-type ATPase [Post 100.0 8E-36 1.7E-40 329.0 31.6 422 367-832 222-683 (744)
25 COG1223 Predicted ATPase (AAA+ 100.0 1.2E-36 2.6E-41 310.8 16.5 210 682-914 149-359 (368)
26 KOG0740 AAA+-type ATPase [Post 100.0 4.8E-37 1E-41 342.4 13.4 274 644-931 150-425 (428)
27 PRK03992 proteasome-activating 100.0 4.6E-36 1E-40 342.5 21.4 229 669-917 149-379 (389)
28 KOG0730 AAA+-type ATPase [Post 100.0 2.7E-36 5.9E-41 343.6 19.1 234 668-930 201-447 (693)
29 CHL00206 ycf2 Ycf2; Provisiona 100.0 2.7E-35 5.9E-40 364.7 22.1 218 678-922 1624-1896(2281)
30 PTZ00361 26 proteosome regulat 100.0 2.8E-35 6.1E-40 336.3 20.0 223 669-911 201-425 (438)
31 TIGR01241 FtsH_fam ATP-depende 100.0 2.3E-33 5E-38 330.9 22.4 222 671-912 74-297 (495)
32 KOG0651 26S proteasome regulat 100.0 1.6E-34 3.4E-39 302.5 10.7 224 668-911 149-374 (388)
33 TIGR03689 pup_AAA proteasome A 100.0 6.9E-33 1.5E-37 320.5 19.9 226 668-909 199-477 (512)
34 KOG0732 AAA+-type ATPase conta 100.0 2.9E-33 6.3E-38 335.6 16.5 242 669-916 283-531 (1080)
35 PLN00020 ribulose bisphosphate 100.0 1.3E-32 2.7E-37 299.4 17.8 188 679-873 143-351 (413)
36 CHL00176 ftsH cell division pr 100.0 3.7E-32 8E-37 324.3 22.1 220 671-910 202-423 (638)
37 TIGR01242 26Sp45 26S proteasom 100.0 5.9E-32 1.3E-36 307.3 22.1 222 669-910 140-363 (364)
38 PRK10733 hflB ATP-dependent me 100.0 1E-31 2.2E-36 324.1 22.3 214 680-913 181-395 (644)
39 KOG0738 AAA+-type ATPase [Post 100.0 6E-32 1.3E-36 290.2 17.3 259 366-660 212-473 (491)
40 KOG0652 26S proteasome regulat 100.0 1.2E-31 2.6E-36 273.8 16.4 241 366-660 171-416 (424)
41 TIGR01243 CDC48 AAA family ATP 100.0 3.1E-30 6.7E-35 317.5 24.0 241 669-914 196-439 (733)
42 COG1223 Predicted ATPase (AAA+ 100.0 8.1E-30 1.8E-34 260.9 22.1 304 271-657 50-356 (368)
43 KOG0736 Peroxisome assembly fa 100.0 3.1E-30 6.6E-35 296.1 21.0 258 365-659 671-935 (953)
44 KOG0729 26S proteasome regulat 100.0 2.4E-30 5.2E-35 265.0 16.7 260 338-660 158-422 (435)
45 KOG0734 AAA+-type ATPase conta 100.0 2.8E-30 6E-35 285.6 16.9 215 366-610 304-523 (752)
46 TIGR02639 ClpA ATP-dependent C 100.0 2.4E-28 5.1E-33 300.1 35.3 417 397-880 203-718 (731)
47 KOG0732 AAA+-type ATPase conta 100.0 7.8E-30 1.7E-34 306.3 21.4 353 365-758 264-668 (1080)
48 KOG0726 26S proteasome regulat 100.0 2.2E-30 4.8E-35 268.3 13.2 238 366-657 185-427 (440)
49 PRK11034 clpA ATP-dependent Cl 100.0 4.2E-28 9E-33 294.1 35.2 421 398-880 208-722 (758)
50 KOG0737 AAA+-type ATPase [Post 100.0 6.4E-30 1.4E-34 275.6 17.1 263 365-656 91-359 (386)
51 KOG0727 26S proteasome regulat 100.0 1.7E-29 3.7E-34 257.0 17.5 220 366-611 155-379 (408)
52 KOG0728 26S proteasome regulat 100.0 2E-29 4.3E-34 256.3 16.6 237 367-657 148-389 (404)
53 KOG0731 AAA+-type ATPase conta 100.0 3.8E-28 8.2E-33 285.6 19.8 221 366-611 311-536 (774)
54 KOG0739 AAA+-type ATPase [Post 100.0 1.2E-28 2.6E-33 256.3 11.8 222 366-614 133-356 (439)
55 PTZ00454 26S protease regulato 100.0 3.2E-27 7E-32 268.7 22.1 239 366-658 145-388 (398)
56 KOG0735 AAA+-type ATPase [Post 99.9 4.9E-27 1.1E-31 267.3 18.4 217 367-613 668-890 (952)
57 PTZ00361 26 proteosome regulat 99.9 3.3E-26 7.1E-31 261.9 22.9 239 366-658 183-426 (438)
58 PRK03992 proteasome-activating 99.9 3.7E-26 8.1E-31 261.1 22.0 242 366-661 131-377 (389)
59 CHL00195 ycf46 Ycf46; Provisio 99.9 2.8E-26 6.1E-31 266.2 20.4 215 367-610 229-446 (489)
60 COG0465 HflB ATP-dependent Zn 99.9 1.6E-26 3.4E-31 268.2 17.2 213 374-612 157-374 (596)
61 TIGR03345 VI_ClpV1 type VI sec 99.9 2.5E-24 5.5E-29 266.1 35.7 425 398-880 209-837 (852)
62 CHL00095 clpC Clp protease ATP 99.9 4.7E-24 1E-28 265.0 36.0 428 397-881 200-789 (821)
63 COG0464 SpoVK ATPases of the A 99.9 2.9E-25 6.2E-30 262.7 21.2 237 366-657 242-484 (494)
64 TIGR03346 chaperone_ClpB ATP-d 99.9 3.1E-23 6.7E-28 258.3 39.1 427 398-881 195-833 (852)
65 CHL00206 ycf2 Ycf2; Provisiona 99.9 3.3E-25 7.3E-30 275.8 20.2 207 393-656 1626-1877(2281)
66 PRK10865 protein disaggregatio 99.9 1.2E-22 2.6E-27 252.0 36.7 163 398-593 200-381 (857)
67 TIGR01241 FtsH_fam ATP-depende 99.9 3.3E-24 7.2E-29 253.2 21.3 212 374-611 62-278 (495)
68 KOG0651 26S proteasome regulat 99.9 9.2E-25 2E-29 229.4 12.2 218 368-611 134-356 (388)
69 TIGR01242 26Sp45 26S proteasom 99.9 7.3E-24 1.6E-28 241.1 20.5 237 366-656 122-363 (364)
70 KOG0740 AAA+-type ATPase [Post 99.9 2.3E-24 5.1E-29 241.0 16.0 253 366-659 153-407 (428)
71 COG0542 clpA ATP-binding subun 99.9 2.9E-23 6.3E-28 246.5 26.0 420 399-880 193-761 (786)
72 CHL00176 ftsH cell division pr 99.9 1.4E-23 3E-28 251.0 21.5 219 366-611 183-406 (638)
73 PLN00020 ribulose bisphosphate 99.9 4.2E-23 9.1E-28 225.3 17.7 199 393-611 144-354 (413)
74 TIGR03689 pup_AAA proteasome A 99.9 9.8E-23 2.1E-27 236.3 20.6 212 366-610 182-412 (512)
75 PRK10733 hflB ATP-dependent me 99.9 2.6E-22 5.7E-27 242.6 21.2 212 374-611 159-375 (644)
76 PF00004 AAA: ATPase family as 99.9 1.2E-21 2.5E-26 189.3 12.1 131 687-820 1-132 (132)
77 KOG0744 AAA+-type ATPase [Post 99.8 9.6E-20 2.1E-24 192.5 8.8 205 683-910 176-414 (423)
78 KOG0742 AAA+-type ATPase [Post 99.8 8.6E-19 1.9E-23 189.6 15.8 177 683-868 383-587 (630)
79 CHL00181 cbbX CbbX; Provisiona 99.8 6.8E-18 1.5E-22 185.2 16.4 204 684-905 59-281 (287)
80 TIGR02881 spore_V_K stage V sp 99.8 1.6E-17 3.6E-22 180.5 18.4 183 684-880 42-245 (261)
81 TIGR02880 cbbX_cfxQ probable R 99.7 1.4E-17 3E-22 182.9 15.5 206 683-906 57-281 (284)
82 KOG0743 AAA+-type ATPase [Post 99.7 9.8E-18 2.1E-22 186.5 14.1 193 675-878 225-428 (457)
83 PF00004 AAA: ATPase family as 99.7 2.1E-17 4.6E-22 159.5 11.7 129 400-551 1-131 (132)
84 KOG0742 AAA+-type ATPase [Post 99.7 9.1E-16 2E-20 166.4 17.0 211 372-609 360-593 (630)
85 TIGR02639 ClpA ATP-dependent C 99.7 7.4E-16 1.6E-20 189.9 17.2 223 682-931 201-454 (731)
86 CHL00181 cbbX CbbX; Provisiona 99.6 3.7E-15 8E-20 163.7 16.9 213 368-612 25-258 (287)
87 PRK11034 clpA ATP-dependent Cl 99.6 4.4E-15 9.5E-20 181.1 17.9 223 682-930 205-457 (758)
88 KOG0744 AAA+-type ATPase [Post 99.6 5.3E-15 1.2E-19 156.9 13.2 154 394-567 174-341 (423)
89 TIGR00763 lon ATP-dependent pr 99.6 1E-14 2.2E-19 180.9 17.7 206 684-908 347-584 (775)
90 TIGR02880 cbbX_cfxQ probable R 99.6 2.7E-14 5.9E-19 156.9 15.7 209 368-612 24-257 (284)
91 TIGR02881 spore_V_K stage V sp 99.6 6E-14 1.3E-18 152.6 17.6 184 395-611 40-241 (261)
92 PRK00080 ruvB Holliday junctio 99.5 3.4E-13 7.4E-18 151.6 21.0 210 683-932 50-275 (328)
93 TIGR00635 ruvB Holliday juncti 99.5 1.5E-12 3.3E-17 144.9 21.3 204 684-930 30-252 (305)
94 PRK10865 protein disaggregatio 99.4 2.5E-13 5.4E-18 169.3 12.3 148 681-842 196-361 (857)
95 KOG0743 AAA+-type ATPase [Post 99.4 1.5E-12 3.3E-17 145.4 16.9 198 371-601 205-413 (457)
96 TIGR00763 lon ATP-dependent pr 99.4 1.1E-12 2.4E-17 162.8 17.4 191 397-608 347-554 (775)
97 PF05496 RuvB_N: Holliday junc 99.4 4.9E-13 1.1E-17 138.5 11.7 166 398-595 51-216 (233)
98 TIGR02928 orc1/cdc6 family rep 99.4 1.6E-12 3.6E-17 148.2 15.9 179 684-876 40-257 (365)
99 TIGR03345 VI_ClpV1 type VI sec 99.4 6.7E-13 1.4E-17 165.1 12.7 163 681-858 205-390 (852)
100 PF05496 RuvB_N: Holliday junc 99.4 1.4E-12 3.1E-17 135.0 12.6 159 684-868 50-224 (233)
101 COG2256 MGS1 ATPase related to 99.4 2.8E-12 6E-17 141.1 14.0 146 399-591 50-204 (436)
102 PRK05342 clpX ATP-dependent pr 99.4 4.9E-12 1.1E-16 145.1 16.8 192 683-877 107-382 (412)
103 PRK00411 cdc6 cell division co 99.4 6.1E-12 1.3E-16 145.1 16.7 197 684-912 55-284 (394)
104 COG2256 MGS1 ATPase related to 99.4 4.7E-12 1E-16 139.3 14.3 192 684-925 48-253 (436)
105 CHL00095 clpC Clp protease ATP 99.4 1.8E-12 3.8E-17 162.0 11.5 165 680-859 196-382 (821)
106 TIGR03346 chaperone_ClpB ATP-d 99.4 2.6E-12 5.7E-17 160.9 12.4 163 681-858 191-376 (852)
107 TIGR02902 spore_lonB ATP-depen 99.4 7.3E-12 1.6E-16 148.9 15.5 185 684-908 86-330 (531)
108 KOG1051 Chaperone HSP104 and r 99.3 2.3E-11 5E-16 147.6 19.5 139 398-568 209-365 (898)
109 PRK10787 DNA-binding ATP-depen 99.3 1.1E-11 2.5E-16 152.6 16.8 201 683-908 348-580 (784)
110 PRK00080 ruvB Holliday junctio 99.3 4.1E-11 8.9E-16 134.8 20.0 195 374-604 32-226 (328)
111 TIGR00362 DnaA chromosomal rep 99.3 1.3E-11 2.8E-16 142.9 15.8 171 684-873 136-318 (405)
112 PRK00149 dnaA chromosomal repl 99.3 1.2E-11 2.6E-16 144.9 15.1 170 685-873 149-330 (450)
113 TIGR00382 clpX endopeptidase C 99.3 1.6E-11 3.4E-16 140.2 15.1 191 684-877 116-388 (413)
114 COG2255 RuvB Holliday junction 99.3 1.4E-11 3.1E-16 129.7 13.2 183 374-591 33-215 (332)
115 COG2255 RuvB Holliday junction 99.3 1.3E-10 2.7E-15 122.7 19.2 209 684-932 52-276 (332)
116 KOG2004 Mitochondrial ATP-depe 99.3 1.4E-11 2.9E-16 142.7 12.1 150 680-836 434-597 (906)
117 PRK14086 dnaA chromosomal repl 99.3 4.1E-11 8.8E-16 141.5 16.3 168 685-870 315-493 (617)
118 TIGR00635 ruvB Holliday juncti 99.3 8.7E-11 1.9E-15 130.7 18.1 176 397-604 30-205 (305)
119 COG5271 MDN1 AAA ATPase contai 99.3 4.9E-11 1.1E-15 145.0 15.5 148 396-568 887-1049(4600)
120 PTZ00112 origin recognition co 99.3 5E-11 1.1E-15 142.0 15.5 162 687-866 784-979 (1164)
121 PRK13342 recombination factor 99.3 7.4E-11 1.6E-15 136.8 16.7 125 684-837 36-166 (413)
122 PRK14088 dnaA chromosomal repl 99.2 5.5E-11 1.2E-15 138.4 14.3 167 685-870 131-310 (440)
123 COG0488 Uup ATPase components 99.2 1.2E-11 2.6E-16 145.4 8.9 54 546-602 152-215 (530)
124 COG0466 Lon ATP-dependent Lon 99.2 9.4E-11 2E-15 136.9 15.4 149 398-566 351-508 (782)
125 PRK12422 chromosomal replicati 99.2 1.1E-10 2.5E-15 135.5 15.9 204 685-920 142-358 (445)
126 TIGR02928 orc1/cdc6 family rep 99.2 8.9E-10 1.9E-14 125.7 22.7 204 368-609 17-255 (365)
127 KOG2004 Mitochondrial ATP-depe 99.2 9E-11 2E-15 136.0 14.2 197 395-612 436-653 (906)
128 PRK06893 DNA replication initi 99.2 9.1E-11 2E-15 125.2 13.4 158 685-867 40-205 (229)
129 TIGR00390 hslU ATP-dependent p 99.2 2.1E-10 4.5E-15 129.3 16.4 144 683-831 46-342 (441)
130 COG0466 Lon ATP-dependent Lon 99.2 2.8E-10 6E-15 133.1 16.8 145 684-835 350-508 (782)
131 PRK05201 hslU ATP-dependent pr 99.2 2.9E-10 6.3E-15 128.2 14.9 143 684-831 50-344 (443)
132 COG1474 CDC6 Cdc6-related prot 99.2 6.2E-10 1.3E-14 126.1 17.4 176 684-877 42-249 (366)
133 PRK00411 cdc6 cell division co 99.2 2.7E-09 5.8E-14 123.2 22.7 197 374-609 37-263 (394)
134 PRK04195 replication factor C 99.1 3E-10 6.5E-15 134.3 14.4 159 684-871 39-205 (482)
135 PRK14962 DNA polymerase III su 99.1 4.8E-10 1E-14 131.0 15.7 143 684-852 36-207 (472)
136 PRK04195 replication factor C 99.1 1E-09 2.3E-14 129.7 18.5 177 373-604 20-203 (482)
137 PRK14087 dnaA chromosomal repl 99.1 4E-10 8.6E-15 131.4 14.5 171 685-874 142-328 (450)
138 PRK12402 replication factor C 99.1 4.7E-10 1E-14 126.4 14.4 162 685-871 37-229 (337)
139 PRK13342 recombination factor 99.1 1.5E-09 3.2E-14 126.0 18.8 157 398-603 37-199 (413)
140 PTZ00112 origin recognition co 99.1 2E-09 4.2E-14 128.7 19.6 185 373-600 761-978 (1164)
141 TIGR03420 DnaA_homol_Hda DnaA 99.1 3.9E-10 8.4E-15 119.8 12.6 165 683-874 37-210 (226)
142 PRK10787 DNA-binding ATP-depen 99.1 7.4E-10 1.6E-14 136.7 16.8 194 396-610 348-557 (784)
143 TIGR01650 PD_CobS cobaltochela 99.1 5.6E-10 1.2E-14 123.0 14.0 144 397-566 64-233 (327)
144 TIGR02640 gas_vesic_GvpN gas v 99.1 3.8E-10 8.3E-15 122.9 11.9 134 683-835 20-198 (262)
145 TIGR02640 gas_vesic_GvpN gas v 99.1 6E-10 1.3E-14 121.3 13.3 146 397-566 21-198 (262)
146 PHA02544 44 clamp loader, smal 99.1 1.2E-09 2.6E-14 122.2 16.1 147 373-567 27-174 (316)
147 PRK00149 dnaA chromosomal repl 99.1 1.9E-09 4.1E-14 126.6 17.1 165 398-602 149-324 (450)
148 PRK13341 recombination factor 99.1 9.8E-10 2.1E-14 134.1 15.2 156 684-870 52-222 (725)
149 TIGR02903 spore_lon_C ATP-depe 99.1 2.2E-09 4.8E-14 129.7 18.1 200 683-911 174-431 (615)
150 TIGR00390 hslU ATP-dependent p 99.1 1.4E-09 3.1E-14 122.6 15.0 58 395-452 45-104 (441)
151 cd00009 AAA The AAA+ (ATPases 99.1 5.1E-10 1.1E-14 108.7 10.1 122 683-819 18-150 (151)
152 TIGR02902 spore_lonB ATP-depen 99.1 1.8E-09 4E-14 128.6 16.7 191 397-609 86-313 (531)
153 PRK14956 DNA polymerase III su 99.1 4.1E-09 9E-14 121.6 18.9 175 373-604 24-226 (484)
154 KOG2028 ATPase related to the 99.1 3E-09 6.5E-14 115.1 16.0 199 685-927 163-385 (554)
155 PRK05201 hslU ATP-dependent pr 99.1 2.1E-09 4.5E-14 121.4 15.4 56 397-452 50-107 (443)
156 TIGR00362 DnaA chromosomal rep 99.1 2.5E-09 5.4E-14 123.9 16.5 166 398-603 137-313 (405)
157 PRK08084 DNA replication initi 99.1 1.7E-09 3.8E-14 115.8 14.0 157 685-868 46-212 (235)
158 PRK14962 DNA polymerase III su 99.1 3.4E-09 7.4E-14 123.9 17.5 148 396-591 35-210 (472)
159 TIGR03420 DnaA_homol_Hda DnaA 99.1 1E-08 2.2E-13 108.9 19.7 178 372-606 22-207 (226)
160 PHA02544 44 clamp loader, smal 99.1 1.2E-09 2.6E-14 122.3 13.2 131 684-836 43-174 (316)
161 TIGR00382 clpX endopeptidase C 99.0 3E-09 6.5E-14 121.6 16.4 203 397-609 116-385 (413)
162 PRK14961 DNA polymerase III su 99.0 3.8E-09 8.2E-14 120.5 17.1 159 684-870 38-225 (363)
163 PRK07003 DNA polymerase III su 99.0 5.7E-09 1.2E-13 124.6 19.1 159 684-870 38-225 (830)
164 PRK05342 clpX ATP-dependent pr 99.0 4E-09 8.6E-14 121.3 17.1 212 396-610 107-380 (412)
165 PRK08903 DnaA regulatory inact 99.0 2.5E-09 5.5E-14 113.9 14.0 176 683-908 41-224 (227)
166 PRK07940 DNA polymerase III su 99.0 2E-09 4.3E-14 123.2 13.9 188 642-866 6-215 (394)
167 PRK12323 DNA polymerase III su 99.0 2.1E-09 4.4E-14 126.9 14.2 181 641-870 16-230 (700)
168 PRK07003 DNA polymerase III su 99.0 7.7E-09 1.7E-13 123.6 19.2 174 373-603 22-223 (830)
169 PRK14956 DNA polymerase III su 99.0 2.6E-09 5.5E-14 123.3 14.7 156 684-867 40-224 (484)
170 PRK14960 DNA polymerase III su 99.0 8.4E-09 1.8E-13 122.1 19.2 175 373-604 21-223 (702)
171 PRK06645 DNA polymerase III su 99.0 7.4E-09 1.6E-13 121.7 18.8 167 396-605 42-234 (507)
172 TIGR01650 PD_CobS cobaltochela 99.0 1.8E-09 3.8E-14 119.2 12.6 143 680-836 60-234 (327)
173 PRK12323 DNA polymerase III su 99.0 5.1E-09 1.1E-13 123.6 17.0 174 373-603 22-228 (700)
174 KOG2028 ATPase related to the 99.0 1.1E-08 2.3E-13 110.8 17.9 155 399-600 164-337 (554)
175 PLN03025 replication factor C 99.0 1.9E-09 4.1E-14 120.9 12.7 153 685-868 35-200 (319)
176 PRK06893 DNA replication initi 99.0 3.7E-09 8E-14 112.9 13.9 147 399-591 41-195 (229)
177 PF07728 AAA_5: AAA domain (dy 99.0 2.4E-10 5.2E-15 112.0 3.9 110 686-812 1-139 (139)
178 PLN03025 replication factor C 99.0 9.1E-09 2E-13 115.4 16.8 152 399-602 36-199 (319)
179 PRK14961 DNA polymerase III su 99.0 2.1E-08 4.5E-13 114.5 19.6 175 373-604 22-224 (363)
180 PRK05642 DNA replication initi 99.0 5.2E-09 1.1E-13 112.1 13.8 157 685-868 46-211 (234)
181 PRK07940 DNA polymerase III su 99.0 1.7E-08 3.6E-13 115.6 18.7 184 372-602 10-216 (394)
182 cd00009 AAA The AAA+ (ATPases 99.0 4.3E-09 9.3E-14 102.1 12.0 125 396-551 18-150 (151)
183 COG2204 AtoC Response regulato 99.0 4.3E-10 9.4E-15 128.8 5.5 174 684-876 164-377 (464)
184 PRK14958 DNA polymerase III su 99.0 1.4E-08 3.1E-13 120.0 18.3 175 373-604 22-224 (509)
185 PRK14964 DNA polymerase III su 99.0 2.3E-08 5E-13 116.7 19.7 176 373-605 19-222 (491)
186 PRK14088 dnaA chromosomal repl 99.0 7.6E-09 1.6E-13 120.6 15.6 156 398-591 131-297 (440)
187 PRK08903 DnaA regulatory inact 99.0 6.4E-08 1.4E-12 103.1 21.4 154 396-603 41-202 (227)
188 PRK14960 DNA polymerase III su 99.0 6.5E-09 1.4E-13 123.0 14.7 159 684-870 37-224 (702)
189 COG3829 RocR Transcriptional r 99.0 8.2E-10 1.8E-14 126.3 6.9 170 683-871 267-477 (560)
190 PRK08727 hypothetical protein; 98.9 1.1E-08 2.3E-13 109.6 14.9 151 685-865 42-201 (233)
191 COG0542 clpA ATP-binding subun 98.9 3E-09 6.5E-14 128.0 11.6 153 680-845 187-356 (786)
192 PF00308 Bac_DnaA: Bacterial d 98.9 2.4E-09 5.1E-14 113.5 9.6 166 685-868 35-211 (219)
193 PF07728 AAA_5: AAA domain (dy 98.9 5.1E-10 1.1E-14 109.7 4.2 126 399-544 1-139 (139)
194 PRK14951 DNA polymerase III su 98.9 2.2E-08 4.9E-13 119.8 18.8 174 372-603 21-228 (618)
195 PF07724 AAA_2: AAA domain (Cd 98.9 1.9E-09 4.1E-14 109.6 8.3 114 683-800 2-131 (171)
196 PF05673 DUF815: Protein of un 98.9 2.3E-08 5E-13 105.3 16.5 144 677-843 46-215 (249)
197 PRK06645 DNA polymerase III su 98.9 9.2E-09 2E-13 120.9 15.0 168 684-873 43-237 (507)
198 smart00382 AAA ATPases associa 98.9 3.3E-09 7.2E-14 101.8 9.5 122 684-820 2-146 (148)
199 PRK06620 hypothetical protein; 98.9 9.2E-09 2E-13 108.5 13.5 142 685-868 45-192 (214)
200 TIGR02397 dnaX_nterm DNA polym 98.9 1E-08 2.3E-13 116.5 14.9 159 684-870 36-223 (355)
201 PRK12402 replication factor C 98.9 2.1E-08 4.5E-13 113.1 16.9 160 399-604 38-227 (337)
202 PRK13341 recombination factor 98.9 1.3E-08 2.9E-13 124.3 16.3 158 398-604 53-221 (725)
203 PRK12422 chromosomal replicati 98.9 1.9E-08 4.2E-13 117.1 16.8 156 398-591 142-305 (445)
204 PRK05563 DNA polymerase III su 98.9 1.7E-08 3.7E-13 120.9 16.7 159 684-870 38-225 (559)
205 COG0593 DnaA ATPase involved i 98.9 1.5E-08 3.2E-13 114.8 15.1 173 683-873 112-294 (408)
206 PRK11331 5-methylcytosine-spec 98.9 6.4E-09 1.4E-13 118.8 12.1 121 683-819 193-356 (459)
207 COG1474 CDC6 Cdc6-related prot 98.9 5.3E-08 1.1E-12 110.5 19.3 200 370-611 20-248 (366)
208 PRK07994 DNA polymerase III su 98.9 2.4E-08 5.1E-13 119.9 16.8 158 684-869 38-224 (647)
209 PRK05563 DNA polymerase III su 98.9 5.8E-08 1.3E-12 116.3 20.2 176 372-604 21-224 (559)
210 PRK14958 DNA polymerase III su 98.9 1.5E-08 3.2E-13 119.9 14.8 181 641-870 16-225 (509)
211 PHA02244 ATPase-like protein 98.9 9.1E-09 2E-13 114.7 12.1 131 681-822 116-262 (383)
212 COG0714 MoxR-like ATPases [Gen 98.9 3.3E-09 7.1E-14 119.5 8.8 137 681-836 40-204 (329)
213 PRK07994 DNA polymerase III su 98.9 5.5E-08 1.2E-12 116.8 19.4 173 373-602 22-222 (647)
214 PRK14949 DNA polymerase III su 98.9 5.4E-08 1.2E-12 118.6 19.4 178 374-602 23-222 (944)
215 KOG0989 Replication factor C, 98.9 2.1E-08 4.5E-13 107.3 13.6 148 399-591 59-222 (346)
216 PRK08084 DNA replication initi 98.9 2.5E-08 5.4E-13 106.9 14.5 147 398-591 46-201 (235)
217 PRK14964 DNA polymerase III su 98.9 2.3E-08 5E-13 116.7 15.2 160 684-871 35-223 (491)
218 KOG0989 Replication factor C, 98.9 6.1E-09 1.3E-13 111.3 9.5 154 684-866 57-228 (346)
219 PRK14086 dnaA chromosomal repl 98.9 1.8E-08 3.8E-13 119.4 14.2 155 399-591 316-480 (617)
220 PRK14949 DNA polymerase III su 98.9 2.3E-08 5E-13 121.7 15.4 164 684-870 38-225 (944)
221 PF05673 DUF815: Protein of un 98.9 6.6E-08 1.4E-12 101.9 16.9 182 375-602 35-243 (249)
222 PHA02244 ATPase-like protein 98.9 1.1E-08 2.4E-13 114.0 11.7 130 397-556 119-264 (383)
223 COG3604 FhlA Transcriptional r 98.9 2.8E-09 6.1E-14 120.4 6.7 180 683-873 245-456 (550)
224 PRK08691 DNA polymerase III su 98.8 4E-08 8.7E-13 117.5 16.3 176 373-605 22-225 (709)
225 COG0714 MoxR-like ATPases [Gen 98.8 1.1E-08 2.3E-13 115.4 10.8 143 397-565 43-202 (329)
226 PRK14959 DNA polymerase III su 98.8 2.5E-08 5.4E-13 118.7 14.2 143 684-852 38-209 (624)
227 PRK07764 DNA polymerase III su 98.8 6.7E-08 1.5E-12 119.6 18.4 157 684-868 37-224 (824)
228 smart00382 AAA ATPases associa 98.8 3.7E-08 8E-13 94.5 12.6 128 397-553 2-147 (148)
229 PRK08727 hypothetical protein; 98.8 5.2E-08 1.1E-12 104.3 14.6 146 398-590 42-195 (233)
230 PRK14970 DNA polymerase III su 98.8 5E-08 1.1E-12 111.7 15.1 163 684-868 39-212 (367)
231 TIGR02903 spore_lon_C ATP-depe 98.8 1.9E-07 4.1E-12 113.2 20.5 158 398-569 176-369 (615)
232 PRK08691 DNA polymerase III su 98.8 4.1E-08 8.9E-13 117.4 14.4 160 684-871 38-226 (709)
233 PRK14952 DNA polymerase III su 98.8 1.4E-07 3E-12 112.7 19.0 176 372-604 18-223 (584)
234 PRK14957 DNA polymerase III su 98.8 6.3E-08 1.4E-12 114.6 15.7 159 684-870 38-225 (546)
235 PRK13407 bchI magnesium chelat 98.8 5.3E-08 1.1E-12 108.9 14.3 136 685-835 30-216 (334)
236 PRK14963 DNA polymerase III su 98.8 5.4E-08 1.2E-12 114.9 15.1 157 684-868 36-220 (504)
237 PRK14963 DNA polymerase III su 98.8 1.2E-07 2.6E-12 111.9 18.0 173 373-602 20-219 (504)
238 PRK07764 DNA polymerase III su 98.8 1.3E-07 2.8E-12 117.1 19.0 174 373-603 21-224 (824)
239 PRK14953 DNA polymerase III su 98.8 5E-08 1.1E-12 114.8 14.4 164 684-870 38-225 (486)
240 PRK00440 rfc replication facto 98.8 4.6E-08 9.9E-13 109.4 13.5 151 686-867 40-202 (319)
241 COG1219 ClpX ATP-dependent pro 98.8 1.4E-08 3E-13 108.6 8.7 100 684-783 97-203 (408)
242 TIGR02397 dnaX_nterm DNA polym 98.8 2E-07 4.3E-12 106.0 18.9 163 373-591 20-210 (355)
243 PRK14969 DNA polymerase III su 98.8 1.3E-07 2.9E-12 112.5 18.0 175 373-604 22-224 (527)
244 PRK06620 hypothetical protein; 98.8 4.1E-08 8.9E-13 103.6 12.1 132 398-590 45-180 (214)
245 PF00308 Bac_DnaA: Bacterial d 98.8 6.8E-08 1.5E-12 102.4 13.8 163 399-601 36-209 (219)
246 PRK14951 DNA polymerase III su 98.8 7.6E-08 1.6E-12 115.3 15.8 159 684-870 38-230 (618)
247 PRK14957 DNA polymerase III su 98.8 1.3E-07 2.9E-12 111.9 17.6 160 396-604 37-224 (546)
248 PRK05896 DNA polymerase III su 98.8 1.1E-07 2.4E-12 112.7 16.9 159 396-603 37-223 (605)
249 TIGR00678 holB DNA polymerase 98.8 4.6E-08 1E-12 101.1 12.2 127 683-834 13-167 (188)
250 PRK14952 DNA polymerase III su 98.8 1.1E-07 2.4E-12 113.5 16.9 158 684-869 35-223 (584)
251 TIGR00678 holB DNA polymerase 98.8 2.1E-07 4.6E-12 96.2 16.6 144 395-591 12-183 (188)
252 PRK07133 DNA polymerase III su 98.8 2.6E-07 5.6E-12 111.7 19.3 163 684-869 40-223 (725)
253 TIGR02974 phageshock_pspF psp 98.8 2E-08 4.4E-13 112.8 9.4 172 683-873 21-233 (329)
254 PRK05896 DNA polymerase III su 98.7 7.5E-08 1.6E-12 114.1 14.0 157 684-868 38-223 (605)
255 PRK14965 DNA polymerase III su 98.7 2E-07 4.4E-12 112.2 17.8 173 373-602 22-222 (576)
256 PRK14959 DNA polymerase III su 98.7 2.1E-07 4.5E-12 111.0 17.4 163 373-591 22-212 (624)
257 PRK14969 DNA polymerase III su 98.7 6.6E-08 1.4E-12 115.0 13.0 159 684-870 38-225 (527)
258 PRK05642 DNA replication initi 98.7 2.3E-07 4.9E-12 99.5 15.9 147 398-591 46-200 (234)
259 COG5271 MDN1 AAA ATPase contai 98.7 3.5E-08 7.6E-13 121.2 10.5 148 395-567 1541-1704(4600)
260 PRK07133 DNA polymerase III su 98.7 4E-07 8.8E-12 110.0 19.6 179 373-602 24-221 (725)
261 COG1224 TIP49 DNA helicase TIP 98.7 3.7E-07 8E-12 99.3 16.7 47 396-442 64-112 (450)
262 COG2812 DnaX DNA polymerase II 98.7 1.4E-07 3E-12 109.9 14.5 182 373-605 22-225 (515)
263 COG1123 ATPase components of v 98.7 1E-08 2.2E-13 119.1 5.1 310 392-759 30-384 (539)
264 COG1224 TIP49 DNA helicase TIP 98.7 6.6E-07 1.4E-11 97.4 18.5 48 678-725 59-108 (450)
265 PRK09087 hypothetical protein; 98.7 2E-07 4.3E-12 99.3 14.4 170 685-910 45-222 (226)
266 PRK14953 DNA polymerase III su 98.7 5.2E-07 1.1E-11 106.2 19.3 181 373-604 22-224 (486)
267 PRK09111 DNA polymerase III su 98.7 5.8E-07 1.3E-11 108.0 19.8 182 372-604 29-237 (598)
268 PRK14087 dnaA chromosomal repl 98.7 1.7E-07 3.8E-12 109.5 14.9 170 398-605 142-324 (450)
269 PRK06647 DNA polymerase III su 98.7 5.8E-07 1.3E-11 107.5 19.6 176 372-604 21-224 (563)
270 PRK08451 DNA polymerase III su 98.7 6.2E-07 1.3E-11 105.8 19.4 177 372-605 19-223 (535)
271 PRK00440 rfc replication facto 98.7 3.4E-07 7.5E-12 102.3 16.7 145 399-591 40-195 (319)
272 TIGR03015 pepcterm_ATPase puta 98.7 5E-07 1.1E-11 98.6 17.5 190 686-911 45-267 (269)
273 PRK14948 DNA polymerase III su 98.7 3.1E-07 6.8E-12 110.9 17.4 179 373-602 22-224 (620)
274 COG1221 PspF Transcriptional r 98.7 2.8E-08 6E-13 112.3 7.7 172 684-874 101-310 (403)
275 PRK05022 anaerobic nitric oxid 98.7 4.9E-08 1.1E-12 116.3 10.1 174 683-875 209-422 (509)
276 PRK15429 formate hydrogenlyase 98.7 2.7E-07 5.7E-12 114.1 16.8 173 683-874 398-610 (686)
277 PRK11608 pspF phage shock prot 98.7 1.4E-07 2.9E-12 106.2 12.7 171 684-873 29-240 (326)
278 PRK14970 DNA polymerase III su 98.7 5E-07 1.1E-11 103.4 17.5 153 396-590 38-200 (367)
279 PRK06305 DNA polymerase III su 98.7 8.6E-07 1.9E-11 103.7 19.6 172 373-601 23-223 (451)
280 PRK15424 propionate catabolism 98.7 5.1E-08 1.1E-12 115.5 9.3 169 683-872 241-464 (538)
281 KOG0745 Putative ATP-dependent 98.7 6.9E-08 1.5E-12 107.0 9.4 98 684-783 226-332 (564)
282 PRK14948 DNA polymerase III su 98.7 1.1E-06 2.3E-11 106.4 20.4 149 684-852 38-211 (620)
283 PF07724 AAA_2: AAA domain (Cd 98.6 5.1E-08 1.1E-12 99.2 7.3 122 396-534 2-131 (171)
284 PRK14955 DNA polymerase III su 98.6 2.3E-07 5E-12 107.1 13.6 162 684-868 38-231 (397)
285 TIGR00764 lon_rel lon-related 98.6 3.4E-07 7.3E-12 110.7 15.1 106 788-912 267-393 (608)
286 PRK10636 putative ABC transpor 98.6 3.1E-08 6.7E-13 121.1 6.2 58 542-602 144-211 (638)
287 TIGR03015 pepcterm_ATPase puta 98.6 8.5E-07 1.8E-11 96.7 16.9 178 399-611 45-249 (269)
288 PRK06305 DNA polymerase III su 98.6 3.9E-07 8.4E-12 106.6 15.0 143 684-852 39-211 (451)
289 KOG0062 ATPase component of AB 98.6 4.1E-08 8.9E-13 111.2 6.6 67 535-604 186-262 (582)
290 TIGR02329 propionate_PrpR prop 98.6 8E-08 1.7E-12 113.9 9.3 171 684-873 235-450 (526)
291 KOG1969 DNA replication checkp 98.6 4.1E-07 8.9E-12 106.7 14.7 170 684-875 326-517 (877)
292 TIGR02442 Cob-chelat-sub cobal 98.6 2.3E-07 5E-12 113.1 13.4 133 685-835 26-214 (633)
293 PRK10820 DNA-binding transcrip 98.6 1.2E-07 2.6E-12 113.0 10.7 171 684-873 227-437 (520)
294 PRK11388 DNA-binding transcrip 98.6 6.6E-08 1.4E-12 118.5 8.7 171 684-873 348-554 (638)
295 PRK06647 DNA polymerase III su 98.6 3.5E-07 7.6E-12 109.4 14.5 157 684-868 38-223 (563)
296 PRK09087 hypothetical protein; 98.6 3.2E-07 7E-12 97.6 12.8 137 398-590 45-186 (226)
297 KOG0927 Predicted transporter 98.6 4E-08 8.6E-13 111.9 6.0 53 536-591 210-269 (614)
298 TIGR01817 nifA Nif-specific re 98.6 6.1E-08 1.3E-12 116.4 7.8 172 683-873 218-428 (534)
299 PRK14965 DNA polymerase III su 98.6 3.3E-07 7.1E-12 110.4 13.9 143 684-852 38-209 (576)
300 PF00158 Sigma54_activat: Sigm 98.6 1.3E-08 2.9E-13 103.2 1.5 119 683-820 21-162 (168)
301 COG1219 ClpX ATP-dependent pro 98.6 1.6E-07 3.5E-12 100.7 9.6 98 398-497 98-201 (408)
302 PRK13531 regulatory ATPase Rav 98.6 9.3E-08 2E-12 110.3 8.5 137 682-833 37-192 (498)
303 PF06068 TIP49: TIP49 C-termin 98.6 2.6E-07 5.7E-12 102.2 11.2 46 396-441 49-96 (398)
304 PF07726 AAA_3: ATPase family 98.6 1.7E-08 3.7E-13 96.1 1.7 118 399-545 1-130 (131)
305 PRK11331 5-methylcytosine-spec 98.6 3.5E-07 7.6E-12 104.8 12.6 140 397-552 194-357 (459)
306 PRK09111 DNA polymerase III su 98.6 6.7E-07 1.4E-11 107.5 15.4 164 684-869 46-237 (598)
307 PRK14955 DNA polymerase III su 98.6 1.5E-06 3.2E-11 100.5 17.6 179 373-602 22-230 (397)
308 PRK04132 replication factor C 98.6 8.8E-07 1.9E-11 109.1 15.9 149 397-593 564-725 (846)
309 TIGR02030 BchI-ChlI magnesium 98.5 2E-06 4.3E-11 96.6 17.3 46 521-566 172-219 (337)
310 KOG1969 DNA replication checkp 98.5 1.1E-06 2.4E-11 103.1 15.6 142 398-567 327-482 (877)
311 PRK14954 DNA polymerase III su 98.5 2.9E-06 6.3E-11 102.2 19.5 161 684-867 38-230 (620)
312 PRK14950 DNA polymerase III su 98.5 2.3E-06 5.1E-11 103.5 18.8 173 373-602 22-223 (585)
313 TIGR02031 BchD-ChlD magnesium 98.5 9.5E-07 2.1E-11 106.6 15.1 134 685-836 17-175 (589)
314 TIGR02030 BchI-ChlI magnesium 98.5 1.4E-06 3.1E-11 97.8 15.5 76 744-834 132-218 (337)
315 smart00350 MCM minichromosome 98.5 9.1E-07 2E-11 105.3 14.1 136 682-836 234-401 (509)
316 PRK08451 DNA polymerase III su 98.5 1E-06 2.2E-11 103.9 14.3 161 684-872 36-225 (535)
317 KOG0066 eIF2-interacting prote 98.5 1.9E-07 4.2E-12 103.1 7.4 61 534-597 399-469 (807)
318 COG1245 Predicted ATPase, RNas 98.5 2.6E-07 5.7E-12 103.3 8.4 36 395-430 98-133 (591)
319 PF05621 TniB: Bacterial TniB 98.5 4E-06 8.7E-11 91.3 17.2 210 367-612 35-273 (302)
320 PRK14954 DNA polymerase III su 98.5 3.8E-06 8.2E-11 101.3 18.6 155 395-591 36-220 (620)
321 PRK05707 DNA polymerase III su 98.5 3.6E-06 7.7E-11 94.5 17.0 133 395-565 20-177 (328)
322 KOG0745 Putative ATP-dependent 98.5 5.1E-07 1.1E-11 100.3 9.8 98 398-497 227-330 (564)
323 COG0470 HolB ATPase involved i 98.5 1.4E-06 3.1E-11 97.5 13.9 125 399-563 26-178 (325)
324 PRK04132 replication factor C 98.5 1.7E-06 3.7E-11 106.7 15.4 143 684-852 564-720 (846)
325 COG2607 Predicted ATPase (AAA+ 98.5 2.1E-06 4.6E-11 89.2 13.6 138 683-842 84-246 (287)
326 TIGR00368 Mg chelatase-related 98.5 2.2E-06 4.7E-11 101.1 15.3 120 683-820 210-390 (499)
327 PLN03073 ABC transporter F fam 98.5 5.1E-07 1.1E-11 111.2 10.3 64 535-601 332-405 (718)
328 COG0593 DnaA ATPase involved i 98.4 4.5E-06 9.8E-11 94.9 16.9 154 398-590 114-277 (408)
329 COG2607 Predicted ATPase (AAA+ 98.4 7.4E-06 1.6E-10 85.2 16.8 185 368-602 62-275 (287)
330 COG0470 HolB ATPase involved i 98.4 8.7E-07 1.9E-11 99.2 10.7 113 686-819 26-166 (325)
331 PRK14950 DNA polymerase III su 98.4 2.6E-06 5.7E-11 103.1 15.3 157 684-868 38-224 (585)
332 PF12775 AAA_7: P-loop contain 98.4 2.4E-07 5.3E-12 101.2 5.8 145 397-567 33-194 (272)
333 PRK13407 bchI magnesium chelat 98.4 3.3E-06 7.1E-11 94.7 14.5 46 521-566 169-216 (334)
334 PF07726 AAA_3: ATPase family 98.4 6E-08 1.3E-12 92.4 0.6 105 686-812 1-129 (131)
335 PRK13531 regulatory ATPase Rav 98.4 6.3E-07 1.4E-11 103.5 8.6 139 397-565 39-193 (498)
336 PRK14971 DNA polymerase III su 98.4 1.1E-05 2.5E-10 97.6 19.6 173 373-602 23-224 (614)
337 KOG1514 Origin recognition com 98.4 4.6E-06 1E-10 98.0 15.3 205 684-914 422-659 (767)
338 PRK14971 DNA polymerase III su 98.4 4.8E-06 1E-10 100.8 16.2 157 684-868 39-225 (614)
339 PF05621 TniB: Bacterial TniB 98.4 6.5E-06 1.4E-10 89.7 15.1 179 684-876 61-272 (302)
340 PRK09112 DNA polymerase III su 98.4 5E-06 1.1E-10 94.1 14.6 162 684-868 45-243 (351)
341 CHL00081 chlI Mg-protoporyphyr 98.3 1.7E-06 3.8E-11 97.1 10.4 77 744-835 145-232 (350)
342 PRK05707 DNA polymerase III su 98.3 2.7E-06 5.9E-11 95.5 11.5 132 682-833 20-176 (328)
343 CHL00081 chlI Mg-protoporyphyr 98.3 1.5E-05 3.3E-10 89.6 17.4 46 521-566 185-232 (350)
344 PRK09112 DNA polymerase III su 98.3 1.5E-05 3.2E-10 90.3 17.4 161 396-601 44-241 (351)
345 COG3284 AcoR Transcriptional a 98.3 2E-07 4.3E-12 108.9 2.2 222 684-917 336-584 (606)
346 PRK11361 acetoacetate metaboli 98.3 1.4E-06 3.1E-11 102.5 9.3 171 684-873 166-376 (457)
347 TIGR02915 PEP_resp_reg putativ 98.3 1.2E-06 2.6E-11 102.8 8.4 172 684-874 162-373 (445)
348 PRK09862 putative ATP-dependen 98.3 7.1E-06 1.5E-10 96.5 14.5 122 682-821 208-388 (506)
349 COG1124 DppF ABC-type dipeptid 98.3 3.3E-06 7.1E-11 88.5 10.2 172 386-604 22-209 (252)
350 TIGR00602 rad24 checkpoint pro 98.3 8.4E-06 1.8E-10 98.2 15.0 186 374-602 91-322 (637)
351 smart00350 MCM minichromosome 98.3 5.9E-06 1.3E-10 98.4 13.6 143 398-567 237-401 (509)
352 PRK07471 DNA polymerase III su 98.3 3.8E-05 8.2E-10 87.5 19.3 148 373-566 25-213 (365)
353 PRK11147 ABC transporter ATPas 98.3 7.6E-07 1.6E-11 109.1 6.0 56 544-602 153-218 (635)
354 TIGR02031 BchD-ChlD magnesium 98.3 1.5E-05 3.4E-10 96.2 17.1 143 398-566 17-174 (589)
355 PRK08116 hypothetical protein; 98.3 1.2E-06 2.6E-11 95.7 6.6 69 684-754 114-189 (268)
356 PRK06964 DNA polymerase III su 98.3 9.5E-06 2.1E-10 91.2 13.7 133 395-565 19-203 (342)
357 COG1220 HslU ATP-dependent pro 98.2 6.5E-06 1.4E-10 89.2 11.2 92 457-563 251-346 (444)
358 PRK15115 response regulator Gl 98.2 1E-06 2.2E-11 103.4 5.5 171 684-873 157-367 (444)
359 TIGR02974 phageshock_pspF psp 98.2 5.3E-06 1.1E-10 93.4 10.5 71 397-470 22-107 (329)
360 PRK05564 DNA polymerase III su 98.2 3.5E-05 7.7E-10 86.3 17.1 130 395-566 24-165 (313)
361 PRK06871 DNA polymerase III su 98.2 2.8E-05 6.1E-10 86.9 16.1 132 396-565 23-178 (325)
362 PRK08058 DNA polymerase III su 98.2 2.2E-05 4.9E-10 88.4 15.3 142 372-564 11-180 (329)
363 PRK06964 DNA polymerase III su 98.2 8.5E-06 1.8E-10 91.6 11.8 132 682-833 19-202 (342)
364 PRK10923 glnG nitrogen regulat 98.2 2.4E-06 5.2E-11 101.1 7.8 171 684-873 161-371 (469)
365 PRK08181 transposase; Validate 98.2 1.7E-06 3.7E-11 94.2 6.0 101 683-799 105-209 (269)
366 PF12774 AAA_6: Hydrolytic ATP 98.2 4E-06 8.7E-11 89.4 8.6 140 398-562 33-176 (231)
367 TIGR01818 ntrC nitrogen regula 98.2 3.2E-06 7E-11 99.8 8.6 174 684-873 157-367 (463)
368 PRK10365 transcriptional regul 98.2 2.9E-06 6.2E-11 99.5 8.0 171 684-873 162-372 (441)
369 PF13173 AAA_14: AAA domain 98.2 8.4E-06 1.8E-10 78.9 9.9 69 398-468 3-73 (128)
370 PF01078 Mg_chelatase: Magnesi 98.2 1.6E-06 3.5E-11 89.8 4.4 25 684-708 22-46 (206)
371 PRK06526 transposase; Provisio 98.1 2.1E-06 4.5E-11 93.0 5.3 101 683-799 97-201 (254)
372 PRK08769 DNA polymerase III su 98.1 5.4E-05 1.2E-09 84.5 16.6 150 369-564 6-183 (319)
373 PF13177 DNA_pol3_delta2: DNA 98.1 2.2E-05 4.8E-10 79.2 12.3 117 395-552 17-160 (162)
374 PRK07993 DNA polymerase III su 98.1 4.2E-05 9E-10 86.2 15.5 149 370-564 5-178 (334)
375 PRK09183 transposase/IS protei 98.1 3.6E-06 7.8E-11 91.6 6.8 75 681-756 99-177 (259)
376 PRK13765 ATP-dependent proteas 98.1 1.3E-05 2.7E-10 97.0 12.0 117 788-924 276-413 (637)
377 PRK10762 D-ribose transporter 98.1 7.3E-07 1.6E-11 106.3 1.5 37 392-428 25-61 (501)
378 TIGR00602 rad24 checkpoint pro 98.1 3.1E-05 6.7E-10 93.4 15.1 170 683-873 109-328 (637)
379 PRK11608 pspF phage shock prot 98.1 1.6E-05 3.5E-10 89.4 12.0 142 397-567 29-195 (326)
380 PRK15134 microcin C ABC transp 98.1 5.7E-06 1.2E-10 99.4 8.4 31 678-708 306-336 (529)
381 PRK15439 autoinducer 2 ABC tra 98.1 8.4E-07 1.8E-11 106.0 1.2 37 393-429 33-69 (510)
382 COG4172 ABC-type uncharacteriz 98.1 7.6E-06 1.7E-10 90.7 8.5 310 392-758 31-379 (534)
383 PRK10938 putative molybdenum t 98.1 2.6E-06 5.7E-11 101.3 5.2 29 679-707 281-309 (490)
384 TIGR00764 lon_rel lon-related 98.1 5.2E-05 1.1E-09 91.9 16.3 26 399-424 39-64 (608)
385 PF13401 AAA_22: AAA domain; P 98.1 1.6E-05 3.6E-10 76.5 9.7 72 397-468 4-99 (131)
386 PRK06090 DNA polymerase III su 98.1 9.2E-05 2E-09 82.6 16.8 146 370-564 6-178 (319)
387 PRK08699 DNA polymerase III su 98.1 2.4E-05 5.2E-10 87.8 12.2 131 395-564 19-183 (325)
388 COG1221 PspF Transcriptional r 98.1 2E-05 4.3E-10 89.4 11.6 185 395-609 99-310 (403)
389 KOG2035 Replication factor C, 98.1 8.5E-05 1.8E-09 78.9 15.3 154 399-594 36-223 (351)
390 PRK07952 DNA replication prote 98.1 5.2E-06 1.1E-10 89.2 6.6 100 685-799 100-205 (244)
391 TIGR03269 met_CoM_red_A2 methy 98.1 2.7E-06 5.8E-11 102.0 4.9 30 679-708 305-334 (520)
392 TIGR02442 Cob-chelat-sub cobal 98.1 2.9E-05 6.3E-10 94.9 13.7 141 399-565 27-213 (633)
393 PRK15064 ABC transporter ATP-b 98.1 3.3E-06 7.1E-11 101.5 5.1 57 543-602 151-217 (530)
394 PF00158 Sigma54_activat: Sigm 98.1 2.5E-05 5.5E-10 79.3 10.7 70 398-470 23-107 (168)
395 PRK05564 DNA polymerase III su 98.1 5E-05 1.1E-09 85.1 14.2 131 684-834 26-164 (313)
396 PRK13549 xylose transporter AT 98.0 1.1E-06 2.5E-11 104.8 0.9 30 679-708 283-312 (506)
397 KOG2680 DNA helicase TIP49, TB 98.0 9.9E-05 2.1E-09 78.9 15.2 75 533-612 339-413 (454)
398 smart00763 AAA_PrkA PrkA AAA d 98.0 3.3E-05 7.2E-10 86.6 12.4 66 770-838 250-330 (361)
399 PRK10982 galactose/methyl gala 98.0 2.2E-06 4.7E-11 102.1 2.9 38 392-429 19-56 (491)
400 PRK12377 putative replication 98.0 8E-06 1.7E-10 87.9 7.0 101 684-799 101-206 (248)
401 KOG1942 DNA helicase, TBP-inte 98.0 0.0001 2.2E-09 78.6 14.8 41 396-436 63-105 (456)
402 PRK10261 glutathione transport 98.0 9.8E-06 2.1E-10 99.2 8.5 37 392-428 37-73 (623)
403 PRK08116 hypothetical protein; 98.0 2E-05 4.3E-10 86.2 10.0 69 397-467 114-189 (268)
404 TIGR00368 Mg chelatase-related 98.0 3.7E-05 7.9E-10 90.9 12.5 26 396-421 210-235 (499)
405 PRK08939 primosomal protein Dn 98.0 1E-05 2.2E-10 90.0 7.2 101 684-799 156-261 (306)
406 PRK09700 D-allose transporter 98.0 3.3E-06 7.1E-11 101.0 3.4 37 392-428 26-62 (510)
407 PRK11819 putative ABC transpor 98.0 1E-05 2.2E-10 97.9 7.5 55 545-602 161-225 (556)
408 COG1220 HslU ATP-dependent pro 98.0 4.1E-05 8.9E-10 83.1 11.2 82 745-831 252-345 (444)
409 COG1125 OpuBA ABC-type proline 98.0 2.2E-05 4.8E-10 82.5 8.9 168 383-605 20-204 (309)
410 PRK08058 DNA polymerase III su 98.0 3.5E-05 7.6E-10 86.9 11.3 129 684-832 28-179 (329)
411 PRK07471 DNA polymerase III su 98.0 5.9E-05 1.3E-09 85.9 13.0 131 684-834 41-212 (365)
412 PRK11288 araG L-arabinose tran 98.0 3.2E-06 6.9E-11 100.9 2.9 30 679-708 274-303 (501)
413 PRK05022 anaerobic nitric oxid 98.0 4.7E-05 1E-09 90.9 12.8 71 397-470 210-295 (509)
414 KOG0991 Replication factor C, 98.0 4.9E-05 1.1E-09 78.6 10.9 138 374-564 34-183 (333)
415 PF09336 Vps4_C: Vps4 C termin 98.0 5.4E-06 1.2E-10 69.4 3.3 36 895-930 27-62 (62)
416 TIGR01817 nifA Nif-specific re 98.0 2.6E-05 5.7E-10 93.8 10.5 140 397-568 219-386 (534)
417 PF01695 IstB_IS21: IstB-like 98.0 5.3E-06 1.1E-10 85.1 3.9 72 682-755 45-120 (178)
418 PF13401 AAA_22: AAA domain; P 98.0 1.5E-05 3.3E-10 76.7 6.7 99 683-796 3-125 (131)
419 PRK06835 DNA replication prote 97.9 1.3E-05 2.9E-10 89.8 7.0 71 684-756 183-259 (329)
420 TIGR02633 xylG D-xylose ABC tr 97.9 3.7E-06 8.1E-11 100.3 2.8 30 679-708 281-310 (500)
421 COG2812 DnaX DNA polymerase II 97.9 3.6E-05 7.9E-10 90.1 10.7 186 642-871 17-226 (515)
422 PRK15429 formate hydrogenlyase 97.9 7.5E-05 1.6E-09 92.5 14.1 71 396-470 398-484 (686)
423 PRK07399 DNA polymerase III su 97.9 0.00027 5.8E-09 79.1 17.0 132 396-566 25-195 (314)
424 KOG0991 Replication factor C, 97.9 2.8E-05 6.1E-10 80.4 8.3 104 685-807 49-161 (333)
425 PF01078 Mg_chelatase: Magnesi 97.9 5.3E-06 1.1E-10 86.0 3.0 24 398-421 23-46 (206)
426 KOG1514 Origin recognition com 97.9 0.00029 6.3E-09 83.3 17.4 199 397-657 422-656 (767)
427 PTZ00111 DNA replication licen 97.9 2.6E-05 5.7E-10 96.0 8.9 136 681-835 489-657 (915)
428 KOG2227 Pre-initiation complex 97.9 0.00036 7.8E-09 79.2 17.0 217 680-913 171-418 (529)
429 COG5245 DYN1 Dynein, heavy cha 97.9 3.5E-05 7.7E-10 95.5 9.7 149 396-569 1493-1661(3164)
430 PF14532 Sigma54_activ_2: Sigm 97.9 6.1E-06 1.3E-10 81.0 2.8 59 684-756 21-82 (138)
431 PRK06871 DNA polymerase III su 97.9 7.4E-05 1.6E-09 83.5 11.7 131 683-833 23-177 (325)
432 PRK13409 putative ATPase RIL; 97.9 8.5E-06 1.8E-10 98.7 4.4 35 395-429 97-131 (590)
433 PF03215 Rad17: Rad17 cell cyc 97.9 0.00029 6.4E-09 83.6 17.0 171 398-605 46-265 (519)
434 PF05729 NACHT: NACHT domain 97.9 0.00013 2.8E-09 72.8 12.0 140 399-568 2-165 (166)
435 KOG2680 DNA helicase TIP49, TB 97.9 0.00018 3.8E-09 77.0 13.2 43 680-722 62-106 (454)
436 PF13173 AAA_14: AAA domain 97.9 2.6E-05 5.7E-10 75.4 6.6 69 685-755 3-73 (128)
437 PF14532 Sigma54_activ_2: Sigm 97.9 1.3E-05 2.9E-10 78.6 4.4 59 398-470 22-83 (138)
438 COG1118 CysA ABC-type sulfate/ 97.8 2.2E-05 4.7E-10 84.7 6.1 61 540-603 130-204 (345)
439 COG1484 DnaC DNA replication p 97.8 2.8E-05 6E-10 84.3 7.0 72 683-755 104-179 (254)
440 PRK06921 hypothetical protein; 97.8 2.4E-05 5.1E-10 85.5 6.4 68 684-754 117-188 (266)
441 COG4619 ABC-type uncharacteriz 97.8 6.3E-05 1.4E-09 74.4 8.2 42 385-426 17-58 (223)
442 PRK07399 DNA polymerase III su 97.8 0.00015 3.3E-09 81.1 12.2 159 684-867 26-223 (314)
443 TIGR02329 propionate_PrpR prop 97.8 0.00023 5E-09 84.8 14.4 71 397-470 235-321 (526)
444 PRK07993 DNA polymerase III su 97.8 0.0001 2.2E-09 83.1 10.8 131 682-832 22-177 (334)
445 COG1120 FepC ABC-type cobalami 97.8 3.6E-05 7.9E-10 82.6 6.9 42 393-434 24-67 (258)
446 PF03215 Rad17: Rad17 cell cyc 97.8 0.00021 4.6E-09 84.7 13.9 172 684-874 45-269 (519)
447 PRK08699 DNA polymerase III su 97.8 8.9E-05 1.9E-09 83.2 10.2 130 682-832 19-182 (325)
448 COG3283 TyrR Transcriptional r 97.8 2.3E-05 5.1E-10 85.5 5.3 167 684-873 227-432 (511)
449 COG4608 AppF ABC-type oligopep 97.8 2.9E-05 6.4E-10 83.0 6.0 40 391-430 33-72 (268)
450 COG0488 Uup ATPase components 97.8 6.6E-05 1.4E-09 89.1 9.5 155 387-604 338-503 (530)
451 KOG2227 Pre-initiation complex 97.8 0.00043 9.4E-09 78.6 15.2 168 395-600 173-368 (529)
452 PRK06526 transposase; Provisio 97.8 2.4E-05 5.1E-10 84.8 4.6 73 395-469 96-172 (254)
453 PF13177 DNA_pol3_delta2: DNA 97.8 6.6E-05 1.4E-09 75.9 7.5 114 684-819 19-159 (162)
454 PRK10820 DNA-binding transcrip 97.7 0.00044 9.5E-09 82.8 15.6 70 398-470 228-312 (520)
455 PRK08181 transposase; Validate 97.7 4.9E-05 1.1E-09 82.9 6.7 71 397-469 106-180 (269)
456 COG2204 AtoC Response regulato 97.7 9.2E-05 2E-09 85.6 9.3 140 398-567 165-330 (464)
457 PRK09183 transposase/IS protei 97.7 6.7E-05 1.5E-09 81.7 7.8 73 395-468 100-176 (259)
458 COG4172 ABC-type uncharacteriz 97.7 9.9E-05 2.1E-09 82.1 8.9 142 392-577 308-453 (534)
459 COG1239 ChlI Mg-chelatase subu 97.7 0.00018 4E-09 81.1 11.1 144 399-566 40-232 (423)
460 KOG1051 Chaperone HSP104 and r 97.7 0.00022 4.7E-09 87.9 12.6 135 371-534 566-712 (898)
461 PF01637 Arch_ATPase: Archaeal 97.7 0.00011 2.4E-09 77.6 8.7 161 684-857 20-227 (234)
462 cd01120 RecA-like_NTPases RecA 97.7 0.00014 3E-09 72.1 8.9 109 687-800 2-138 (165)
463 PRK10923 glnG nitrogen regulat 97.7 0.00033 7.3E-09 82.9 13.6 139 397-567 161-327 (469)
464 TIGR02915 PEP_resp_reg putativ 97.7 0.00017 3.8E-09 84.7 10.9 66 398-470 163-247 (445)
465 PF06068 TIP49: TIP49 C-termin 97.7 3.5E-05 7.6E-10 85.7 4.7 59 680-739 46-106 (398)
466 PRK06835 DNA replication prote 97.7 0.0001 2.2E-09 82.7 8.3 69 398-468 184-258 (329)
467 PF01637 Arch_ATPase: Archaeal 97.7 0.00033 7.2E-09 73.9 11.9 161 397-592 20-227 (234)
468 COG3829 RocR Transcriptional r 97.7 0.0001 2.3E-09 85.2 8.4 73 395-470 266-354 (560)
469 PRK09862 putative ATP-dependen 97.7 0.00011 2.3E-09 86.7 8.7 133 395-556 208-391 (506)
470 COG1239 ChlI Mg-chelatase subu 97.7 0.00043 9.3E-09 78.2 12.9 137 685-837 39-234 (423)
471 PRK06090 DNA polymerase III su 97.7 0.00029 6.4E-09 78.6 11.6 131 682-832 23-177 (319)
472 PRK09302 circadian clock prote 97.6 0.00076 1.6E-08 80.8 15.5 81 677-757 266-377 (509)
473 PRK11388 DNA-binding transcrip 97.6 0.00052 1.1E-08 84.5 14.5 71 397-470 348-430 (638)
474 COG0606 Predicted ATPase with 97.6 0.00015 3.3E-09 82.8 8.9 25 684-708 198-222 (490)
475 PRK15424 propionate catabolism 97.6 9E-05 1.9E-09 88.2 7.3 71 397-470 242-336 (538)
476 cd01120 RecA-like_NTPases RecA 97.6 0.00029 6.3E-09 69.8 10.0 71 400-470 2-99 (165)
477 PTZ00111 DNA replication licen 97.6 0.00015 3.2E-09 89.5 9.1 144 397-567 492-658 (915)
478 PRK08769 DNA polymerase III su 97.6 0.00027 5.8E-09 79.0 10.4 130 683-832 25-182 (319)
479 PRK06851 hypothetical protein; 97.6 0.0012 2.6E-08 74.8 15.7 34 684-717 214-250 (367)
480 COG3842 PotA ABC-type spermidi 97.6 3.4E-05 7.3E-10 86.5 3.1 35 540-577 129-163 (352)
481 KOG0990 Replication factor C, 97.6 0.00019 4.1E-09 77.9 8.6 130 686-838 64-206 (360)
482 COG1116 TauB ABC-type nitrate/ 97.6 3.7E-05 7.9E-10 81.3 3.0 41 383-430 22-62 (248)
483 TIGR01818 ntrC nitrogen regula 97.6 0.00033 7.1E-09 82.8 10.9 145 398-568 158-324 (463)
484 PF03969 AFG1_ATPase: AFG1-lik 97.6 5.4E-05 1.2E-09 86.0 4.0 141 681-850 59-208 (362)
485 COG1123 ATPase components of v 97.5 0.00017 3.6E-09 84.5 8.0 143 391-576 311-455 (539)
486 KOG0990 Replication factor C, 97.5 9.7E-05 2.1E-09 80.1 5.2 130 399-569 64-206 (360)
487 KOG1808 AAA ATPase containing 97.5 0.00045 9.6E-09 90.3 11.9 143 398-566 441-599 (1856)
488 PRK06921 hypothetical protein; 97.5 0.00021 4.5E-09 78.1 7.8 67 397-466 117-187 (266)
489 KOG2035 Replication factor C, 97.5 0.00077 1.7E-08 71.8 11.2 156 685-865 35-225 (351)
490 PRK12377 putative replication 97.5 0.00013 2.8E-09 78.7 5.6 69 398-468 102-175 (248)
491 PF00931 NB-ARC: NB-ARC domain 97.5 0.0011 2.3E-08 73.0 13.0 153 398-592 20-195 (287)
492 TIGR01618 phage_P_loop phage n 97.5 0.00017 3.7E-09 76.1 6.4 72 684-757 12-95 (220)
493 PRK07952 DNA replication prote 97.5 0.00013 2.8E-09 78.5 5.5 69 398-468 100-174 (244)
494 PRK13406 bchD magnesium chelat 97.5 0.00051 1.1E-08 82.7 11.1 124 685-826 26-174 (584)
495 COG3604 FhlA Transcriptional r 97.5 0.00026 5.7E-09 81.0 7.8 70 398-470 247-331 (550)
496 COG3839 MalK ABC-type sugar tr 97.4 6.3E-05 1.4E-09 83.8 2.5 32 399-430 31-62 (338)
497 PRK08939 primosomal protein Dn 97.4 0.00017 3.7E-09 80.3 5.6 70 396-467 155-228 (306)
498 TIGR02237 recomb_radB DNA repa 97.4 0.00029 6.3E-09 74.0 6.9 82 676-757 4-111 (209)
499 PRK11361 acetoacetate metaboli 97.4 0.0015 3.2E-08 77.1 13.7 70 398-470 167-251 (457)
500 COG1484 DnaC DNA replication p 97.4 0.0002 4.3E-09 77.7 5.8 68 396-468 104-179 (254)
No 1
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-115 Score=989.14 Aligned_cols=863 Identities=42% Similarity=0.578 Sum_probs=689.1
Q ss_pred hhccccceEeechhHHHhhhccCCcccccccCCCC-----CCCCCCCccccccccccCccccccccccCCCCceEEeecH
Q 002337 26 MVERRKPLVLSSTKLLINSVLSSSRRVTGENLVGD-----DVSPSLQLPAGILRFSKDKIDISDAKFASLDDSALLGLST 100 (934)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~l~~ 100 (934)
|++|+.||.+.+++....++++.+--....-..|. ..+..-.+..|++++.++.. -+++..+.|++++..+.+
T Consensus 1 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~tld~~~~~~~~~ 78 (953)
T KOG0736|consen 1 MLRRLEPLPTETPPLAVRLPPGGSWPAAALGLVGALRPAGYSPGGTALLIAALEGPDAGT--EDALLRTLDLSSGAWLLA 78 (953)
T ss_pred CccccccCCCCCCchhhhccCCCCcchhhhcccccccccccCCCCCCcceEEEecCCCCc--ccccccccccccccchhh
Confidence 77888999999999999999988653333333344 33335688899999998763 388899999999999999
Q ss_pred hhhhhccccccceEEE---------------------------------eecCCCcceEEEEEEecCCCCCccccCCCCc
Q 002337 101 CVLKQLSVTSGSLVLV---------------------------------KNAETTKQRIAQVVVLDPPTTRKQVCDGDVH 147 (934)
Q Consensus 101 ~~l~~l~~~~G~~v~v---------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 147 (934)
.+++++.+.+++..-. +|.-.... ++++++..+......+-..+-.
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~el~~~~n~~~~e~~~~~~~il~~g~-l~~~v~~~~~k~~~~~~~~t~~ 157 (953)
T KOG0736|consen 79 RAVRRLPINSVSLDGQSLGLGQDVGQDLVRIQELLPGYNIRVLETRPALQNILGPGT-LAQTVVRSEAKLCLERFDSTQP 157 (953)
T ss_pred cceeeccccceEeecccccccCCchhHHHHHHHHhhcCCchhheecccccceeccce-EEEEEEccccccccccccccCC
Confidence 9999999988776431 11112222 7888888777655554333222
Q ss_pred cCCCC---CcccccCCCCCCCCccccccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCC-CC
Q 002337 148 SKHSS---PTMLTFPSIHLPQDDMELLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDG-KA 223 (934)
Q Consensus 148 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 223 (934)
..+.+ +.|..++....- +-...+.+|++-.+....|..++..++..++|.|+.-..-++.....+.-.+... -.
T Consensus 158 p~~~~~~~~~l~~~~~~~~~--~lv~~s~~v~~~~~~~~~~c~~~~v~~~~lv~~g~~~~~~~~~~~~~e~~l~~~~~~g 235 (953)
T KOG0736|consen 158 PPPVSKFISSLLVNEEQELL--GLVGDSQEVARSILRGLGNCSLEWVLLAQLVHIGNTNQPDLGTVQVIEPRLDVSARLG 235 (953)
T ss_pred CchhHHHHHHHhhcchhhhh--hccccchHHHHhhhcccccceeeeeehhhhhhcCCCCCcchhhhhhhHhhhccccccc
Confidence 21111 344444444322 2223456666767777788888778888888888876655554333322221111 11
Q ss_pred ceEEEEEEecC--------CCCCcceeeEEE------eeecC--CCCccccccCCchhhhhhh----HHHHHHHHHhhcc
Q 002337 224 SLIKLGLQSVG--------QLPKYASHLRVS------FVKIP--ECGTLESLKGSSAIEAEDR----QEKIDLALHNYFE 283 (934)
Q Consensus 224 ~~~~v~~~p~~--------~~p~~a~~~rv~------~~~~p--~~~~~~~~~~~~~~~~~~~----q~~~~~~l~~~f~ 283 (934)
..+.+...||. .+|-|+.+.||+ ++.++ .++++-+...++.+..+.. +++++..|++||+
T Consensus 236 s~~~~~~~~~s~~~~~~~~~~~~~~~~~ri~~~~~~~i~~~~k~~~~~ip~~~~~~~f~~~~~~h~~~~~~~~~l~~~f~ 315 (953)
T KOG0736|consen 236 SGIGLDSEPLSPGLALVQETLPNYAGEDRIQRFLVCSIVPEDKASEGTIPGPPTASEFHIEIVSHYSAGNIDVVLKKHFK 315 (953)
T ss_pred cccccCccccCcchhhhhhhcccccchHhHhhhcccccccccccccccCCCcccchheeeeccchhhhhHHHHHHHHHhC
Confidence 22223334443 245567776766 55566 5777777766666653333 4999999999999
Q ss_pred CCCeeecCCEEEEecccCCCCccccccccccCCCCCceEEEEEEEEecCCCeEEEEeCCeeEEEEcCCCCCCC---CCCc
Q 002337 284 VDRYLARGDVFSVCINWNCSSMICIPCRQRLHRRSDNIIYFKVVAVEPSEETVLRVNCTKTALVLGGSIPSAL---PPDL 360 (934)
Q Consensus 284 ~~r~~~~gd~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~vd~~~T~lv~~~~~~s~~---p~~~ 360 (934)
++|.++.||+|+|+++|++..+.+.++ .......+..|||+|++++|..+..++||+++|++|+++.+++++ |++.
T Consensus 316 t~ril~~gdvf~i~~~~~~~~~~~~~~-l~l~~~~d~~v~~~v~~~ep~~~~~~~i~~~~T~lv~~~~~ss~~~~lps~~ 394 (953)
T KOG0736|consen 316 TPRILQSGDVFCIPINSQMANLNGYPE-LPLWRETDFLVYKKVIEAEPGNESAYIIDTNHTSLVLVGATSSRVPLLPSSL 394 (953)
T ss_pred cceeeecCCEEEEeehhhhcccccchh-hHhhhhccceeEEEEeecCCCccceEEEcCCCceEEEccccccCCcCCChhh
Confidence 999999999999999999888776665 333345688999999999998888999999999999999999983 3222
Q ss_pred ccccCCCCcCCchHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccc
Q 002337 361 LISGSNDFVPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERK 440 (934)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~ 440 (934)
.........+..+..+..+.+++.|-+.|+....+....+||+|+|||||||+++++|.++|+|+++++|+++.+...+.
T Consensus 395 ~~l~n~~~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~ 474 (953)
T KOG0736|consen 395 STLWNSLSPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASH 474 (953)
T ss_pred HHHhccCCCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccch
Confidence 22111222333344556888999999999988888899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhh
Q 002337 441 TSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKIC 520 (934)
Q Consensus 441 ~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~ 520 (934)
++..+..+|..|+.++|+|||+.++|.|.. ++++ +..-++.+.++.++. .++....
T Consensus 475 ~etkl~~~f~~a~~~~pavifl~~~dvl~i--d~dg------ged~rl~~~i~~~ls----------------~e~~~~~ 530 (953)
T KOG0736|consen 475 TETKLQAIFSRARRCSPAVLFLRNLDVLGI--DQDG------GEDARLLKVIRHLLS----------------NEDFKFS 530 (953)
T ss_pred hHHHHHHHHHHHhhcCceEEEEeccceeee--cCCC------chhHHHHHHHHHHHh----------------cccccCC
Confidence 999999999999999999999999999985 2222 344566777766653 2333445
Q ss_pred cccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 521 RQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 521 ~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
..+++|||+|++.+.+++.+++.|.++|.++.|+++||.+||++++.... .+.+..++.++.+|.||+.+|+..+
T Consensus 531 ~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~-----~n~~v~~k~~a~~t~gfs~~~L~~l 605 (953)
T KOG0736|consen 531 CPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP-----LNQDVNLKQLARKTSGFSFGDLEAL 605 (953)
T ss_pred CCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc-----cchHHHHHHHHHhcCCCCHHHHHHH
Confidence 78999999999999999999999999999999999999999999986542 3556778999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhcccccccCCCC------------
Q 002337 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPK------------ 668 (934)
Q Consensus 601 ~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~~~~~~i~~pk------------ 668 (934)
...+...+..+.....- .......+..........++++||.+++.++++.++.++|+|+
T Consensus 606 ~~~~s~~~~~~i~~~~l--------~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGL 677 (953)
T KOG0736|consen 606 VAHSSLAAKTRIKNKGL--------AGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGL 677 (953)
T ss_pred hcCchHHHHHHHHhhcc--------cccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCH
Confidence 98774444333211110 0000111223334456788999999999999999999999988
Q ss_pred ------------CccchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHH
Q 002337 669 ------------LPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIF 736 (934)
Q Consensus 669 ------------~pl~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf 736 (934)
+|++||++|..|+++++|||||||||||||++|||+|++|+.+|++|+|+||++||+|+||+|+|++|
T Consensus 678 eevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VF 757 (953)
T KOG0736|consen 678 EEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVF 757 (953)
T ss_pred HHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcC-CCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 737 QKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND-SSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 737 ~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~-~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
++||.++||||||||+|+++|+||.+||+||+||||++|||+||||+.. ..++|||||||||||.|||||+||||||+.
T Consensus 758 erAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKL 837 (953)
T KOG0736|consen 758 ERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKL 837 (953)
T ss_pred HHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCcccee
Confidence 9999999999999999999999999999999999999999999999986 668899999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCc
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADS 895 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~ 895 (934)
+|++.+.+.+.+..||+++++++.++++||+.++|+.|+..|||||+++||.+|++.|++|.+...+.......+.+.+.
T Consensus 838 vyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~ 917 (953)
T KOG0736|consen 838 VYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSS 917 (953)
T ss_pred EEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999876654322233445567
Q ss_pred ccccHHHHHHHHHhhCCCcCHHHHHHHHHHHHHhcc
Q 002337 896 VVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEG 931 (934)
Q Consensus 896 ~~it~~df~~al~~~~psvs~~~l~~y~~~~~~~~~ 931 (934)
+.|+++||.+|+++++||+|.+|+.+||++|.+|++
T Consensus 918 v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs~ 953 (953)
T KOG0736|consen 918 VRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFSG 953 (953)
T ss_pred EEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhcC
Confidence 899999999999999999999999999999999975
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-100 Score=863.99 Aligned_cols=683 Identities=31% Similarity=0.501 Sum_probs=552.3
Q ss_pred CCccccccccccCccccccccccCCCCceEEeecHhhhhhccccccceEEEeecCCCcceEEEEEEecCCCCCccccCCC
Q 002337 66 LQLPAGILRFSKDKIDISDAKFASLDDSALLGLSTCVLKQLSVTSGSLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDGD 145 (934)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~l~~~~l~~l~~~~G~~v~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 145 (934)
.++++.|+..+..+ +.+.+.. .+||.+.++++..+|..++++.| |++++.. ....+.+++.++.
T Consensus 2 ~~~~~~~~~~~~~~-~~~~v~~-~~~~~~~~~~~~~~~~~~~l~~g--~~~~g~~--~~~~~~~~~~~~~---------- 65 (693)
T KOG0730|consen 2 ESPSTAILPVKCPQ-NNLVVLS-INDDASVVVLSEGAMDKLGLLRG--VLLDGKK--RREPVDAVVQDET---------- 65 (693)
T ss_pred CcccccccccccCC-CCeEEec-CCCccchheecHHHHhhhcCCcc--eEEECcc--ccCCccceeccCC----------
Confidence 36778899888888 8888866 78887799999999999999999 9999766 2223333333222
Q ss_pred CccCCCCCcccccCCCCCCCCccccccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCce
Q 002337 146 VHSKHSSPTMLTFPSIHLPQDDMELLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKASL 225 (934)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (934)
.+....++....+||.++.+.+
T Consensus 66 --------------------------~~~~~~~~~~~r~~l~~~~~~~-------------------------------- 87 (693)
T KOG0730|consen 66 --------------------------SELIGRQTMVSRSNLRLQLGRL-------------------------------- 87 (693)
T ss_pred --------------------------ccccchhhheeccchhhcccce--------------------------------
Confidence 2233466677779999998642
Q ss_pred EEEEEEecCCCCCcceeeEEEeeecCCCCccccccCCchhhhhhhHHHHHHHHHhhcc-CCCeeecCCEEEEecccCCCC
Q 002337 226 IKLGLQSVGQLPKYASHLRVSFVKIPECGTLESLKGSSAIEAEDRQEKIDLALHNYFE-VDRYLARGDVFSVCINWNCSS 304 (934)
Q Consensus 226 ~~v~~~p~~~~p~~a~~~rv~~~~~p~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~f~-~~r~~~~gd~~~v~~~~~~~~ 304 (934)
|.+.+|+++ +++.. |++ +|..++.+++.++ .+|...+.||. .+|++..||++ .
T Consensus 88 --~~~~~~p~v-~~~~~--i~~--l~~~~~~~~i~~~----------~~d~~~~~~~~~~~~~~~~~~~~---~------ 141 (693)
T KOG0730|consen 88 --LHSSDCPSV-KRPAR--IAV--LPVDDTSEGIAGE----------LFDVLERPFLLEALRPLVKGDTF---A------ 141 (693)
T ss_pred --ecccCCCCc-cccce--eee--eehhhccccchhh----------hhhhhhhhhhhhhhCccccccch---h------
Confidence 344556776 67775 555 8888998899887 99999999997 79999999998 1
Q ss_pred ccccccccccCCCCCceEEEEEEEEecCCCeEEEEeCCeeEEEEcCCCCCCCCCC-cccccCCCCcCCchHHHHHHHHHh
Q 002337 305 MICIPCRQRLHRRSDNIIYFKVVAVEPSEETVLRVNCTKTALVLGGSIPSALPPD-LLISGSNDFVPLQGDTVKILASIL 383 (934)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~vd~~~T~lv~~~~~~s~~p~~-~~~~~~~~~~~~~~~~~~~L~~il 383 (934)
....+.|++++..|.. .+ ...|.+...+.....-..+ .... ..++++..........+.
T Consensus 142 -------------~~~~~~~~~~~~~~~~--~v---~~~t~~~~~~~~~~~~~~~~~~~~--~~~gg~~~~~~~i~e~v~ 201 (693)
T KOG0730|consen 142 -------------GLNPAEFKVLELDPSP--QV---TPDTELSYLGEPAKREEEELPEVG--DDIGGLKRQLSVIRELVE 201 (693)
T ss_pred -------------hhhhhhhhccccccch--hc---CccchhhhcCCCcccccccccccc--cccchhHHHHHHHHHHHH
Confidence 1456778888877754 11 2223332222111111111 0111 234444545555556667
Q ss_pred hccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCC-CEE
Q 002337 384 APTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYS-PTI 459 (934)
Q Consensus 384 ~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~-P~I 459 (934)
.|+.+|..+ +.++++++|+|||||||||.+++++|++.+++++.++++++++++.|+++++++.+|++|.+++ |++
T Consensus 202 ~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psi 281 (693)
T KOG0730|consen 202 LPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSI 281 (693)
T ss_pred hhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCee
Confidence 889998776 5789999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChh
Q 002337 460 LLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPT 539 (934)
Q Consensus 460 L~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~a 539 (934)
+||||+|.+++++.... ....++...+..+++ +.....+++|+++||+++.|+++
T Consensus 282 i~IdEld~l~p~r~~~~------~~e~Rv~sqlltL~d-------------------g~~~~~~vivl~atnrp~sld~a 336 (693)
T KOG0730|consen 282 IFIDELDALCPKREGAD------DVESRVVSQLLTLLD-------------------GLKPDAKVIVLAATNRPDSLDPA 336 (693)
T ss_pred EeHHhHhhhCCcccccc------hHHHHHHHHHHHHHh-------------------hCcCcCcEEEEEecCCccccChh
Confidence 99999999999653321 134555555555443 33357899999999999999999
Q ss_pred hhc-ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhcccccC
Q 002337 540 IRR-CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDK 618 (934)
Q Consensus 540 Lrr-rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r~~~~~~~ 618 (934)
+|| ||++++.++.|+..+|.+|++.+++.+... .+..+..+|..|+||+|+||..+|++|++.++++......
T Consensus 337 lRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-----~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~~~~~~- 410 (693)
T KOG0730|consen 337 LRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-----SDVDLEDIAVSTHGYVGADLAALCREASLQATRRTLEIFQ- 410 (693)
T ss_pred hhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-----chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhhHHHHH-
Confidence 998 999999999999999999999999887542 3456899999999999999999999999999887211110
Q ss_pred CCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhcccccccCCCCCccchhHHhh-cCCCCCCcceecCCCCCcc
Q 002337 619 NEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFS-SGLRKRSGVLLYGPPGTGK 697 (934)
Q Consensus 619 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~-~~~~~~~~iLl~GppGtGK 697 (934)
.......+...+........++|+|+ .+++.+|.....++ .||++||+.|. +|+.+++||||||||||||
T Consensus 411 -----~A~~~i~psa~Re~~ve~p~v~W~dI-GGlE~lK~elq~~V---~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~K 481 (693)
T KOG0730|consen 411 -----EALMGIRPSALREILVEMPNVSWDDI-GGLEELKRELQQAV---EWPLKHPEKFARFGISPPKGVLLYGPPGCGK 481 (693)
T ss_pred -----HHHhcCCchhhhheeccCCCCChhhc-cCHHHHHHHHHHHH---hhhhhchHHHHHhcCCCCceEEEECCCCcch
Confidence 00000111111122234556788887 66776665544333 69999999998 5999999999999999999
Q ss_pred hHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhh
Q 002337 698 TLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQML 777 (934)
Q Consensus 698 T~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL 777 (934)
|++|||+|+++++||++|+|++|+++|+|++|++++++|++||+.+||||||||||+++.+|++ .++++.+||++|||
T Consensus 482 T~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g--~~~~v~~RVlsqLL 559 (693)
T KOG0730|consen 482 TLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGG--SSSGVTDRVLSQLL 559 (693)
T ss_pred HHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCC--CccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999973 33489999999999
Q ss_pred hhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCC
Q 002337 778 AEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNF 857 (934)
Q Consensus 778 ~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~ 857 (934)
+||||+.. .++|+||||||||+.||+||+||||||+.||||+ ||.+.|.+||+.+++++++.+++|+.+||+. |+||
T Consensus 560 tEmDG~e~-~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVpl-PD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~-T~g~ 636 (693)
T KOG0730|consen 560 TEMDGLEA-LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPL-PDLEARLEILKQCAKKMPFSEDVDLEELAQA-TEGY 636 (693)
T ss_pred HHcccccc-cCcEEEEeccCChhhcCHHHcCCcccceeEeecC-ccHHHHHHHHHHHHhcCCCCccccHHHHHHH-hccC
Confidence 99999976 5799999999999999999999999999999997 8999999999999999999999999999999 6999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhhCCCcCHHHHHHHHHHHHH
Q 002337 858 TGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQ 928 (934)
Q Consensus 858 sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~psvs~~~l~~y~~~~~~ 928 (934)
|||||.++|++|++.|+++.+. ...|+.+||++|++.++||++.+++++|++|+++
T Consensus 637 SGAel~~lCq~A~~~a~~e~i~---------------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 637 SGAEIVAVCQEAALLALRESIE---------------ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred ChHHHHHHHHHHHHHHHHHhcc---------------cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 9999999999999999999764 2368999999999999999999999999999875
No 3
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-97 Score=827.95 Aligned_cols=534 Identities=35% Similarity=0.599 Sum_probs=438.7
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+++|++ .+..+|++++....||+.| ++.|++|||||||||||||+||+++|+++|++|+.|+.+++++.+.|+++
T Consensus 190 ~diGG~d-~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESE 268 (802)
T KOG0733|consen 190 SDIGGLD-KTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESE 268 (802)
T ss_pred hhccChH-HHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccH
Confidence 4555555 5677778777778999877 67999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
++++.+|++|..++|||+||||||+|.++|.. .++.+..++...|...++.+.. ....+.
T Consensus 269 kkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-----aqreMErRiVaQLlt~mD~l~~---------------~~~~g~ 328 (802)
T KOG0733|consen 269 KKIRELFDQAKSNAPCIVFIDEIDAITPKREE-----AQREMERRIVAQLLTSMDELSN---------------EKTKGD 328 (802)
T ss_pred HHHHHHHHHHhccCCeEEEeecccccccchhh-----HHHHHHHHHHHHHHHhhhcccc---------------cccCCC
Confidence 99999999999999999999999999997632 2223344444444444432211 011257
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
+|+||||||+|+.|||+||| ||++||.++.|++.+|.+||+.++++... .. ...++++|+.|+||+|+||.+|
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl-~g----~~d~~qlA~lTPGfVGADL~AL 403 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRL-SG----DFDFKQLAKLTPGFVGADLMAL 403 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCC-CC----CcCHHHHHhcCCCccchhHHHH
Confidence 89999999999999999999 89999999999999999999999987643 22 3347999999999999999999
Q ss_pred HHHHHHHHHHhhcccccC---CCC-----------C-chhhhh----------------hhhccC---cchhhhhhcCCH
Q 002337 601 VADAGANLIRKSNSEVDK---NEP-----------G-ESDLTA----------------KVAHND---NSSIAATQVMGK 646 (934)
Q Consensus 601 ~~~A~~~ai~r~~~~~~~---~~~-----------~-~~~l~~----------------~~~~~~---~~~~~~~~~i~~ 646 (934)
|.+|+..|++|...+... ..+ . .+.+.. .+.+.. .........++.
T Consensus 404 ~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~ 483 (802)
T KOG0733|consen 404 CREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKF 483 (802)
T ss_pred HHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecH
Confidence 999999999986543221 000 0 001110 000000 012233456888
Q ss_pred HHHHHHHHhhhcccc------------cccCCCC-----------CccchhHHhh-cCCCCCCcceecCCCCCcchHHHH
Q 002337 647 EDLVKAMERSKKRNA------------SALGAPK-----------LPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAK 702 (934)
Q Consensus 647 ed~~~aL~~~k~~~~------------~~i~~pk-----------~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lak 702 (934)
+||..|+..++.... ..+|+.+ ||.++|++|. .|+..|.||||+||||||||++||
T Consensus 484 eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAK 563 (802)
T KOG0733|consen 484 EDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAK 563 (802)
T ss_pred HHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHH
Confidence 999999988765321 1122111 8999999999 599999999999999999999999
Q ss_pred HHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccC
Q 002337 703 AVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG 782 (934)
Q Consensus 703 alA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg 782 (934)
|+|++.++|||+|+|++|+++|+||+|+++|.+|++||..+||||||||+|+|+++|+..+ .++..|++||||+||||
T Consensus 564 AVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDG 641 (802)
T KOG0733|consen 564 AVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDG 641 (802)
T ss_pred HHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999998765 45678999999999999
Q ss_pred CcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHh--cCCCCcCCCHHHHHhhCC-CCCCH
Q 002337 783 LNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTR--KFKLLEDVSLYSIAKKCP-PNFTG 859 (934)
Q Consensus 783 ~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~--~~~~~~~~~l~~la~~~t-~g~sg 859 (934)
+++ ..+|+|||||||||.||||++||||||+.+||++ |+.++|.+||+++++ +.++..|||+++||+.+. +||||
T Consensus 642 l~~-R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~l-Pn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftG 719 (802)
T KOG0733|consen 642 LEE-RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGL-PNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTG 719 (802)
T ss_pred ccc-ccceEEEeecCCCcccchhhcCCCccCceeeecC-CCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCch
Confidence 976 5789999999999999999999999999999998 889999999999999 889999999999999831 49999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhhCCCcCHHHHHHHHHHHHHhc
Q 002337 860 ADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFE 930 (934)
Q Consensus 860 aDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~psvs~~~l~~y~~~~~~~~ 930 (934)
|||.+||++|++.|+++.+...+......... .....+|+.||++|+++++||+++.+-++|+.+++..+
T Consensus 720 ADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~-~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 720 ADLAALVREASILALRESLFEIDSSEDDVTVR-SSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred hhHHHHHHHHHHHHHHHHHhhccccCccccee-eeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 99999999999999999886543321111000 11346899999999999999999999999999998754
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2e-75 Score=717.04 Aligned_cols=683 Identities=28% Similarity=0.466 Sum_probs=514.2
Q ss_pred CceEEeecHhhhhhccccccceEEEe-ecCCCcceEEEEEEecCCCCCccccCCCCccCCCCCcccccCCCCCCCCcccc
Q 002337 92 DSALLGLSTCVLKQLSVTSGSLVLVK-NAETTKQRIAQVVVLDPPTTRKQVCDGDVHSKHSSPTMLTFPSIHLPQDDMEL 170 (934)
Q Consensus 92 ~~~~v~l~~~~l~~l~~~~G~~v~v~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (934)
....+.++...|.+||+..||.|.|+ +.. ...++|....+. .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----------------------------------~ 57 (733)
T TIGR01243 15 GRGIVRIDRQTAARLGVEPGDFVEIEKGDR---SVVAIVWPLRPD----------------------------------D 57 (733)
T ss_pred CCCeEeeCHHHHHhcCCCCCCEEEEecCCC---ceeEEEEecCcc----------------------------------c
Confidence 36799999999999999999999998 322 234444332222 2
Q ss_pred ccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCceEEEEEEecCCCCCcceeeEEEeeec
Q 002337 171 LDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKASLIKLGLQSVGQLPKYASHLRVSFVKI 250 (934)
Q Consensus 171 ~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~p~~a~~~rv~~~~~ 250 (934)
...+++.++..++.|+|+..|+ .|++.+.. . +.|..+.+ .
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~-~-~~~~~~~~----~ 97 (733)
T TIGR01243 58 EGRGIIRMDGYLRANAGVTIGD----------------------------------TVTVERAE-V-KEAKKVVL----A 97 (733)
T ss_pred cCCCEEeecHHHHhhcCCCCCC----------------------------------eEEEeecC-C-CccceEee----c
Confidence 3458889999999999999874 35566543 3 46765432 3
Q ss_pred CCCCccccccCCchhhhhhhHHHHHHHHHhhccCCCeeecCCEEEEecccCCCCccccccccccCCCCCceEEEEEEEEe
Q 002337 251 PECGTLESLKGSSAIEAEDRQEKIDLALHNYFEVDRYLARGDVFSVCINWNCSSMICIPCRQRLHRRSDNIIYFKVVAVE 330 (934)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~f~~~r~~~~gd~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~ 330 (934)
|.... ..+ ..+..+++.+|. .+++.+||.+.+... ...+.|+|+++.
T Consensus 98 ~~~~~---~~~----------~~~~~~~~~~~~-~~~~~~g~~~~~~~~-------------------~~~~~~~v~~~~ 144 (733)
T TIGR01243 98 PTQPI---RFG----------RDFVDYVKEFLL-GKPISKGETVIVPVL-------------------EGALPFVVVSTQ 144 (733)
T ss_pred ccccc---ccc----------cchHHHHHHHHc-CCCCCCCCEEEeccc-------------------CcceeEEEEecC
Confidence 53221 011 144566777776 489999999888643 235789999999
Q ss_pred cCCCeEEEEeCCeeEEEEcC-CCCCC---CCCCcccccCCCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEE
Q 002337 331 PSEETVLRVNCTKTALVLGG-SIPSA---LPPDLLISGSNDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLH 403 (934)
Q Consensus 331 ~~~~~~~~vd~~~T~lv~~~-~~~s~---~p~~~~~~~~~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~ 403 (934)
|... +.+ ...|.+.... ..... ..+.. ..++++++.....+....+..|+.+|..+ ++.++.++|||
T Consensus 145 p~~~--~~~-~~~t~~~~~~~~~~~~~~~~~~~~---~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~ 218 (733)
T TIGR01243 145 PAGF--VYV-TEATEVEIREKPVREEIERKVPKV---TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLY 218 (733)
T ss_pred CCCc--EEE-CCCceEEecCCccccccccCCCCC---CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEE
Confidence 8532 222 3344444332 11110 01121 22445566554444444445677777644 56888999999
Q ss_pred CCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCcccc
Q 002337 404 GLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVG 483 (934)
Q Consensus 404 GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~ 483 (934)
||||||||++++++|++++.+++.++++++.+.+.++++..++.+|+.|....|++|||||+|.+.+.+.... ..
T Consensus 219 GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-----~~ 293 (733)
T TIGR01243 219 GPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-----GE 293 (733)
T ss_pred CCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-----ch
Confidence 9999999999999999999999999999999999999999999999999999999999999999987542211 11
Q ss_pred chHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHH
Q 002337 484 LSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEM 561 (934)
Q Consensus 484 ~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~I 561 (934)
...++...|..+++. ......++||++||.++.+|+++++ ||++++.++.|+.++|.+|
T Consensus 294 ~~~~~~~~Ll~~ld~-------------------l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~I 354 (733)
T TIGR01243 294 VEKRVVAQLLTLMDG-------------------LKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEI 354 (733)
T ss_pred HHHHHHHHHHHHhhc-------------------cccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHH
Confidence 222333333333321 1225679999999999999999998 8999999999999999999
Q ss_pred HHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhh
Q 002337 562 LSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAAT 641 (934)
Q Consensus 562 L~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 641 (934)
++.+++.... .. +..+..++..|+||+++|+..++++|++.++++.......... ...+ .......
T Consensus 355 l~~~~~~~~l-~~----d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~-~~~i--------~~~~~~~ 420 (733)
T TIGR01243 355 LKVHTRNMPL-AE----DVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFE-AEEI--------PAEVLKE 420 (733)
T ss_pred HHHHhcCCCC-cc----ccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccc-cccc--------cchhccc
Confidence 9988876532 22 2346889999999999999999999999998875321111000 0000 0000112
Q ss_pred hcCCHHHHHHHHHhhhccccc--ccC---------------------CCCCccchhHHhh-cCCCCCCcceecCCCCCcc
Q 002337 642 QVMGKEDLVKAMERSKKRNAS--ALG---------------------APKLPLLHKDLFS-SGLRKRSGVLLYGPPGTGK 697 (934)
Q Consensus 642 ~~i~~ed~~~aL~~~k~~~~~--~i~---------------------~pk~pl~~~~~~~-~~~~~~~~iLl~GppGtGK 697 (934)
..++.+||..++..++..... ... ...||+.++++|. .++.++.++||||||||||
T Consensus 421 ~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGK 500 (733)
T TIGR01243 421 LKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGK 500 (733)
T ss_pred ccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCH
Confidence 234556666665544322100 000 1126889999988 4899999999999999999
Q ss_pred hHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhh
Q 002337 698 TLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQML 777 (934)
Q Consensus 698 T~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL 777 (934)
|++|+++|++++.+|+.+++++++++|+|+++++++++|+.|+...||||||||+|+++++|+... ..++.++++++||
T Consensus 501 T~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~-~~~~~~~~~~~lL 579 (733)
T TIGR01243 501 TLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF-DTSVTDRIVNQLL 579 (733)
T ss_pred HHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC-CccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987543 3457789999999
Q ss_pred hhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCC
Q 002337 778 AEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNF 857 (934)
Q Consensus 778 ~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~ 857 (934)
.+|||+.. ..+|+||||||+|+.||||++||||||+.|++++ |+.++|.+||+.++++.++..++++..+|+. |+||
T Consensus 580 ~~ldg~~~-~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~-Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~-t~g~ 656 (733)
T TIGR01243 580 TEMDGIQE-LSNVVVIAATNRPDILDPALLRPGRFDRLILVPP-PDEEARKEIFKIHTRSMPLAEDVDLEELAEM-TEGY 656 (733)
T ss_pred HHhhcccC-CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCC-cCHHHHHHHHHHHhcCCCCCccCCHHHHHHH-cCCC
Confidence 99999865 4689999999999999999999999999999997 8999999999999999999999999999999 5999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcccCCCCC-CccccccCcccccHHHHHHHHHhhCCCcCHHHHHHHHHHHHHhccC
Q 002337 858 TGADMYALCADAWFHAAKRKVLSSDSNSD-SSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEGS 932 (934)
Q Consensus 858 sgaDl~~l~~~A~~~A~~r~~~~~~~~~~-~~~~~~~~~~~it~~df~~al~~~~psvs~~~l~~y~~~~~~~~~~ 932 (934)
||+||.++|++|++.|+++.+........ ....+......|+++||++|+++++||++++++++|++|+++|..-
T Consensus 657 sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 732 (733)
T TIGR01243 657 TGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKRL 732 (733)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccC
Confidence 99999999999999999987653221000 0001112345799999999999999999999999999999999753
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-68 Score=600.13 Aligned_cols=494 Identities=33% Similarity=0.495 Sum_probs=390.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh----CCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhcccc
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRL----GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNL 471 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~el----g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~ 471 (934)
.+.+|||+||+|||||.|+++++++. -+|+..++|+.+-+.......+.++.+|.+|.+++|+|+++|++|.|+..
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~ 509 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASA 509 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc
Confidence 34679999999999999999999997 36788899999888777777889999999999999999999999999873
Q ss_pred ccCCCCCCccccc-hHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhc--ccceEE
Q 002337 472 VSNESLPNDQVGL-SSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR--CFSHEI 548 (934)
Q Consensus 472 ~~~~~~~~d~~~~-~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrr--rF~~eI 548 (934)
.+.++ .+.+. ...+...|+++..+ ....+..+.|||+.+....|+|.|-+ +|+..+
T Consensus 510 s~~e~---~q~~~~~~rla~flnqvi~~------------------y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~ 568 (952)
T KOG0735|consen 510 SSNEN---GQDGVVSERLAAFLNQVIKI------------------YLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVI 568 (952)
T ss_pred CcccC---CcchHHHHHHHHHHHHHHHH------------------HHccCcEEEEEEechhhhhcChhhcCccceEEEE
Confidence 32222 22222 23344444443322 12225568999999999999998876 699999
Q ss_pred EcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhcccccCCCCCchhhhh
Q 002337 549 SMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTA 628 (934)
Q Consensus 549 ~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r~~~~~~~~~~~~~~l~~ 628 (934)
.++.|+..+|.+||+..+++.- +.....+|+.++..|+||...|+..++.+|...++........+ .-....+..
T Consensus 569 ~L~ap~~~~R~~IL~~~~s~~~----~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~k-lltke~f~k 643 (952)
T KOG0735|consen 569 ALPAPAVTRRKEILTTIFSKNL----SDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPK-LLTKELFEK 643 (952)
T ss_pred ecCCcchhHHHHHHHHHHHhhh----hhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcc-cchHHHHHH
Confidence 9999999999999999987532 12234566779999999999999999999988887432222211 111111111
Q ss_pred h----hhccCcchh-hhhhcCCHHHHHHHHHhhhcccccccCCCCCccchhHHhhc-CCCCCCcceecCCCCCcchHHHH
Q 002337 629 K----VAHNDNSSI-AATQVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAK 702 (934)
Q Consensus 629 ~----~~~~~~~~~-~~~~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~-~~~~~~~iLl~GppGtGKT~lak 702 (934)
. .+-..+... ....-+.|+|+ .++..++...... ..||.++|.+|.. +++.+.|||||||||||||++|.
T Consensus 644 sL~~F~P~aLR~ik~~k~tgi~w~di-gg~~~~k~~l~~~---i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~ 719 (952)
T KOG0735|consen 644 SLKDFVPLALRGIKLVKSTGIRWEDI-GGLFEAKKVLEEV---IEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLAS 719 (952)
T ss_pred HHHhcChHHhhhccccccCCCCceec-ccHHHHHHHHHHH---HhccccchHHHhhCCcccccceEEECCCCCcHHHHHH
Confidence 1 010000000 01112556655 4444444333222 2489999999985 99999999999999999999999
Q ss_pred HHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccC
Q 002337 703 AVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG 782 (934)
Q Consensus 703 alA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg 782 (934)
++|..++.+||+|+|++|+++|+|.+|+++|++|.+|+.++||||||||+|+++|+||. |+.|+.+||+||||++|||
T Consensus 720 a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh--DsTGVTDRVVNQlLTelDG 797 (952)
T KOG0735|consen 720 AIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH--DSTGVTDRVVNQLLTELDG 797 (952)
T ss_pred HHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC--CCCCchHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999975 7789999999999999999
Q ss_pred CcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHH
Q 002337 783 LNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADM 862 (934)
Q Consensus 783 ~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl 862 (934)
.+. -++|+|+|||.|||+|||||+||||||+.+|+++ |++.+|.+|++.+..+...+.++|++.+|.. |+|||||||
T Consensus 798 ~Eg-l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~-P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~-T~g~tgADl 874 (952)
T KOG0735|consen 798 AEG-LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPL-PDEPERLEILQVLSNSLLKDTDVDLECLAQK-TDGFTGADL 874 (952)
T ss_pred ccc-cceEEEEEecCCccccCHhhcCCCccceeeeCCC-CCcHHHHHHHHHHhhccCCccccchHHHhhh-cCCCchhhH
Confidence 976 6789999999999999999999999999999997 8999999999999999999999999999999 699999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHH--HhhCCCcCHHHHHHHHHHHHHhccC
Q 002337 863 YALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVL--RELSPSLSMAELKKYELLRDQFEGS 932 (934)
Q Consensus 863 ~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al--~~~~psvs~~~l~~y~~~~~~~~~~ 932 (934)
..||..|.+.|+++.....+.++ ..+.++...+.... ...+||.++-+-+.+.+...+|...
T Consensus 875 q~ll~~A~l~avh~~l~~~~~~~--------~~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 938 (952)
T KOG0735|consen 875 QSLLYNAQLAAVHEILKREDEEG--------VVPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQFLSD 938 (952)
T ss_pred HHHHHHHHHHHHHHHHHhcCccc--------cCCccchhhhhhhhhccCCCccccccchhhhhhHHHhhcCc
Confidence 99999999999999876554221 11123333333333 4778999999999999888888653
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-56 Score=527.80 Aligned_cols=471 Identities=35% Similarity=0.550 Sum_probs=379.9
Q ss_pred cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccc
Q 002337 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLV 472 (934)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~ 472 (934)
...++.+++++||||+|||++++++|.+ +.++..+++++.++++.+..+..++..|+.+....|+++++|++|.+.+.+
T Consensus 14 ~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~ 92 (494)
T COG0464 14 GIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKR 92 (494)
T ss_pred CCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhhhcccCc
Confidence 3567788999999999999999999999 777788999999999999999999999999999999999999999999865
Q ss_pred cCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhc--ccceEEEc
Q 002337 473 SNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR--CFSHEISM 550 (934)
Q Consensus 473 ~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrr--rF~~eI~i 550 (934)
.. ........+...+...+.. ..... +++++.+|++..+++++++ +|+.++.+
T Consensus 93 ~~-----~~~~~~~~v~~~l~~~~d~-------------------~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (494)
T COG0464 93 SS-----DQGEVERRVVAQLLALMDG-------------------LKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEV 147 (494)
T ss_pred cc-----cccchhhHHHHHHHHhccc-------------------ccCCc-eEEEeecCCccccChhHhCccccceeeec
Confidence 33 1122233344433333321 11244 9999999999999999988 79999999
Q ss_pred CCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhc-ccccCCCCCchhhhhh
Q 002337 551 GPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSN-SEVDKNEPGESDLTAK 629 (934)
Q Consensus 551 ~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r~~-~~~~~~~~~~~~l~~~ 629 (934)
+.|+...|.+|++...+.+.. .. ...++.++..++||+++|+..+++++.+...++.. ................
T Consensus 148 ~~~~~~~~~ei~~~~~~~~~~-~~----~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 222 (494)
T COG0464 148 NLPDEAGRLEILQIHTRLMFL-GP----PGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEA 222 (494)
T ss_pred CCCCHHHHHHHHHHHHhcCCC-cc----cccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHH
Confidence 999999999999998866543 11 33468899999999999999999999888887752 1111111111111111
Q ss_pred hhccCc--chhhhhhcCCHHHHHHHHHhhhcccccccCCCCCccchhHHhhc-CCCCCCcceecCCCCCcchHHHHHHHH
Q 002337 630 VAHNDN--SSIAATQVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVAT 706 (934)
Q Consensus 630 ~~~~~~--~~~~~~~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~-~~~~~~~iLl~GppGtGKT~lakalA~ 706 (934)
+..... ........+.++|+ .+++..+..... ...+|+++++.|.. +++++.++|||||||||||++|+++|+
T Consensus 223 l~~~~~~~~~~~~~~~v~~~di-ggl~~~k~~l~e---~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 223 LKKVLPSRGVLFEDEDVTLDDI-GGLEEAKEELKE---AIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred HHhcCcccccccCCCCcceehh-hcHHHHHHHHHH---HHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh
Confidence 111100 01111223444443 223333333222 22488999999885 999999999999999999999999999
Q ss_pred HcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCC
Q 002337 707 ECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDS 786 (934)
Q Consensus 707 ~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~ 786 (934)
+++.+|+++++++++++|+|+++++++++|..|+..+||||||||+|++++.|+.+.+. ...|+++++|++|||++.
T Consensus 299 ~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~--~~~r~~~~lL~~~d~~e~- 375 (494)
T COG0464 299 ESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG--SGRRVVGQLLTELDGIEK- 375 (494)
T ss_pred hCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch--HHHHHHHHHHHHhcCCCc-
Confidence 99999999999999999999999999999999999999999999999999999765433 237999999999999976
Q ss_pred CCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCC--CCcCCCHHHHHhhCCCCCCHHHHHH
Q 002337 787 SQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFK--LLEDVSLYSIAKKCPPNFTGADMYA 864 (934)
Q Consensus 787 ~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~--~~~~~~l~~la~~~t~g~sgaDl~~ 864 (934)
..+|+||+|||+|+.+|||++||||||+.|||++ ||.++|.+||+.+++... +..++++..+++. |+||+|+||.+
T Consensus 376 ~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~-pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~-t~~~sgadi~~ 453 (494)
T COG0464 376 AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPL-PDLEERLEIFKIHLRDKKPPLAEDVDLEELAEI-TEGYSGADIAA 453 (494)
T ss_pred cCceEEEecCCCccccCHhhcccCccceEeecCC-CCHHHHHHHHHHHhcccCCcchhhhhHHHHHHH-hcCCCHHHHHH
Confidence 5679999999999999999999999999999996 999999999999999654 4689999999998 69999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhhCCCcCHHHHHHHHHH
Q 002337 865 LCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELL 925 (934)
Q Consensus 865 l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~psvs~~~l~~y~~~ 925 (934)
+|++|++.|+++.. ...||++||.+|+++++||++ |++|
T Consensus 454 i~~ea~~~~~~~~~----------------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 454 LVREAALEALREAR----------------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred HHHHHHHHHHHHhc----------------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 99999999998753 236999999999999999999 8877
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-52 Score=447.63 Aligned_cols=246 Identities=40% Similarity=0.690 Sum_probs=218.7
Q ss_pred cCCHHHHHHHHHhhhcccccccCCCCCccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccc
Q 002337 643 VMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 721 (934)
Q Consensus 643 ~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~ 721 (934)
.++.+|+ .+|+.-.+... ++..+|+++|++|. .|+.||+|||||||||||||+||||+|++.+++||.|.+++|+
T Consensus 147 dvtY~dI-GGL~~Qi~Eir---E~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 147 DVTYEDI-GGLDEQIQEIR---EVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred CCChhhc-cCHHHHHHHHH---HHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 3455554 34443322222 23468999999999 5999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCc-hhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC
Q 002337 722 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSG-GVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 800 (934)
Q Consensus 722 ~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~-~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~ 800 (934)
.+|+|+..+.+|++|..|+..+||||||||||+++.+|..++.++ .-..|.+-+||++|||+.. ..+|-||+||||+|
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~-~~nvKVI~ATNR~D 301 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP-RGNVKVIMATNRPD 301 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC-CCCeEEEEecCCcc
Confidence 999999999999999999999999999999999999997554333 2457888999999999975 68999999999999
Q ss_pred CCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002337 801 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 880 (934)
Q Consensus 801 ~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~ 880 (934)
.|||||+||||||+.|+||+ |+.+.|.+||++|++++++..++|++.+|+. |+|||||||+++|.+|+|.|+|+.
T Consensus 302 ~LDPALLRPGR~DRkIEfpl-Pd~~gR~~Il~IHtrkM~l~~dvd~e~la~~-~~g~sGAdlkaictEAGm~AiR~~--- 376 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPL-PDEEGRAEILKIHTRKMNLADDVDLELLARL-TEGFSGADLKAICTEAGMFAIRER--- 376 (406)
T ss_pred ccChhhcCCCcccceeecCC-CCHHHHHHHHHHHhhhccCccCcCHHHHHHh-cCCCchHHHHHHHHHHhHHHHHhc---
Confidence 99999999999999999997 8999999999999999999999999999999 599999999999999999999874
Q ss_pred cCCCCCCccccccCcccccHHHHHHHHHhhCC
Q 002337 881 SDSNSDSSRIDQADSVVVEYDDFVKVLRELSP 912 (934)
Q Consensus 881 ~~~~~~~~~~~~~~~~~it~~df~~al~~~~p 912 (934)
...||++||++|..++..
T Consensus 377 --------------R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 377 --------------RDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred --------------cCeecHHHHHHHHHHHHh
Confidence 236999999999998754
No 8
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-52 Score=443.24 Aligned_cols=281 Identities=36% Similarity=0.572 Sum_probs=249.3
Q ss_pred hcCCHHHHHHHHHhhhcccccccCCCCCccchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccc
Q 002337 642 QVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 721 (934)
Q Consensus 642 ~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~ 721 (934)
..+.|+|+ .+|.++++-.. ++..+|+..|+.|....+|.+|+|++||||||||+||||+|.+|+..|+.|+.+.+.
T Consensus 207 p~ikW~DI-agl~~AK~lL~---EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 207 PNIKWDDI-AGLHEAKKLLK---EAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred CCcChHhh-cchHHHHHHHH---HHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 34677776 55666555433 234589999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCC---EEEEEEcCC
Q 002337 722 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQD---LFIIGASNR 798 (934)
Q Consensus 722 ~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~---v~vI~aTNr 798 (934)
++|-|+||+.+|-+|+.||..+|++|||||||+|+.+||++ ..++..+|+.++||.+|||+.....+ |+|+||||.
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s-~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~ 361 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS-SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNF 361 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc-cchhHHHHHHHHHHHHhhccccccccceeEEEEeccCC
Confidence 99999999999999999999999999999999999999976 45678999999999999999876666 999999999
Q ss_pred CCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 002337 799 PDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKV 878 (934)
Q Consensus 799 p~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~ 878 (934)
||.||+||+| ||.+.||||+ |+.+.|..+++.+++...++++++++.+|++ ++||||+||.++|++|+|.++||.+
T Consensus 362 PWdiDEAlrR--RlEKRIyIPL-P~~~~R~~Li~~~l~~~~~~~~~~~~~lae~-~eGySGaDI~nvCreAsm~~mRR~i 437 (491)
T KOG0738|consen 362 PWDIDEALRR--RLEKRIYIPL-PDAEARSALIKILLRSVELDDPVNLEDLAER-SEGYSGADITNVCREASMMAMRRKI 437 (491)
T ss_pred CcchHHHHHH--HHhhheeeeC-CCHHHHHHHHHHhhccccCCCCccHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999 8999999999999999999999999999999 6999999999999999999999998
Q ss_pred cccCCCCCCccccccCcccccHHHHHHHHHhhCCCcCHHHHHHHHHHHHHhcc
Q 002337 879 LSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEG 931 (934)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~psvs~~~l~~y~~~~~~~~~ 931 (934)
......+......+.-..+|+.+||++|+++++||++..++.+|++|.+.|+.
T Consensus 438 ~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 438 AGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred hcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcC
Confidence 65432211111111222579999999999999999999999999999999965
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-47 Score=425.61 Aligned_cols=256 Identities=38% Similarity=0.712 Sum_probs=227.4
Q ss_pred cchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEe
Q 002337 671 LLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFF 749 (934)
Q Consensus 671 l~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfi 749 (934)
++||+.|. .|+.|++|+|||||||||||++|+|+|++++.+|++|+++++++.+.|++|+++|++|+.|+..+|||+||
T Consensus 209 i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFi 288 (802)
T KOG0733|consen 209 IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFI 288 (802)
T ss_pred hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEe
Confidence 57888887 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCC---CCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHH
Q 002337 750 DELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDS---SQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSY 826 (934)
Q Consensus 750 DEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~---~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~ 826 (934)
||||++.|+|.. .+-+..+|++.|||+.||++... +..|+|||||||||.|||||+|+||||+.|.+++ |++.+
T Consensus 289 DeIDAI~pkRe~--aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~v-P~e~a 365 (802)
T KOG0733|consen 289 DEIDAITPKREE--AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGV-PSETA 365 (802)
T ss_pred ecccccccchhh--HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecC-CchHH
Confidence 999999999975 23345689999999999998653 4679999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCC--C-----CC-----Ccc-----
Q 002337 827 RERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDS--N-----SD-----SSR----- 889 (934)
Q Consensus 827 r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~--~-----~~-----~~~----- 889 (934)
|++||+.+.+++.+..++|+.+||+. |+||+||||.+||.+|++.|++|.+..... . +. ...
T Consensus 366 R~~IL~~~~~~lrl~g~~d~~qlA~l-TPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i 444 (802)
T KOG0733|consen 366 REEILRIICRGLRLSGDFDFKQLAKL-TPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSI 444 (802)
T ss_pred HHHHHHHHHhhCCCCCCcCHHHHHhc-CCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhh
Confidence 99999999999999999999999999 699999999999999999999998764321 0 00 000
Q ss_pred ----------------------------ccccCcccccHHHHHHHHHhhCCC-----------cCHHHHHHHHHHHHHhc
Q 002337 890 ----------------------------IDQADSVVVEYDDFVKVLRELSPS-----------LSMAELKKYELLRDQFE 930 (934)
Q Consensus 890 ----------------------------~~~~~~~~it~~df~~al~~~~ps-----------vs~~~l~~y~~~~~~~~ 930 (934)
.+......|+.+||++|+..++|| |+|+++..++++|.+|.
T Consensus 445 ~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~ 524 (802)
T KOG0733|consen 445 KITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELN 524 (802)
T ss_pred hcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHH
Confidence 011122458999999999999987 68999999999999875
No 10
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-44 Score=374.57 Aligned_cols=282 Identities=30% Similarity=0.533 Sum_probs=242.0
Q ss_pred hhcCCHHHHHHHHHhhhcccccccCCCCCccchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccc
Q 002337 641 TQVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 720 (934)
Q Consensus 641 ~~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l 720 (934)
...+.|.|+ .+|+.++.... ++.-+|+++|++|..+..|.+||||||||||||+.||||+|.+.+..|++|+.++|
T Consensus 127 KPNVkWsDV-AGLE~AKeALK---EAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 127 KPNVKWSDV-AGLEGAKEALK---EAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred CCCCchhhh-ccchhHHHHHH---hheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 345667775 55665554332 23358999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC
Q 002337 721 INMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 800 (934)
Q Consensus 721 ~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~ 800 (934)
+++|.|++|+.++.+|+.||...|+||||||||++++.|+. ..++..+|+..+||.+|.|+......|+|+||||-||
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e--nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw 280 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE--NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPW 280 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC--CchHHHHHHHHHHHHhhhccccCCCceEEEecCCCch
Confidence 99999999999999999999999999999999999998864 3456789999999999999988888999999999999
Q ss_pred CCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCC-CcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 002337 801 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKL-LEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVL 879 (934)
Q Consensus 801 ~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~-~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~ 879 (934)
.||.|++| ||++.||||+ |+..+|..+++.++...+. ..+.|+.+|+++ |+||+|+||.-++++|.|..+|+...
T Consensus 281 ~LDsAIRR--RFekRIYIPL-Pe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~k-TeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 281 VLDSAIRR--RFEKRIYIPL-PEAHARARMFKLHLGDTPHVLTEQDFKELARK-TEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred hHHHHHHH--HhhcceeccC-CcHHHhhhhheeccCCCccccchhhHHHHHhh-cCCCCcCceEEEehhhhhhhHHHhhh
Confidence 99999999 9999999999 8899999999999998753 456789999999 69999999999999999999987643
Q ss_pred ccCCCC----C---C-------------c---------cccccCcccccHHHHHHHHHhhCCCcCHHHHHHHHHHHHHhc
Q 002337 880 SSDSNS----D---S-------------S---------RIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFE 930 (934)
Q Consensus 880 ~~~~~~----~---~-------------~---------~~~~~~~~~it~~df~~al~~~~psvs~~~l~~y~~~~~~~~ 930 (934)
+..... . . . ..+..-.++||+.||..+++..+|.|+..+|.+.++|.+.|+
T Consensus 357 AthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFG 436 (439)
T KOG0739|consen 357 ATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFG 436 (439)
T ss_pred hhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhc
Confidence 321100 0 0 0 001122468999999999999999999999999999999997
Q ss_pred cC
Q 002337 931 GS 932 (934)
Q Consensus 931 ~~ 932 (934)
+.
T Consensus 437 qE 438 (439)
T KOG0739|consen 437 QE 438 (439)
T ss_pred cC
Confidence 53
No 11
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=9.6e-42 Score=394.87 Aligned_cols=390 Identities=21% Similarity=0.400 Sum_probs=287.4
Q ss_pred CCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCC
Q 002337 456 SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG 535 (934)
Q Consensus 456 ~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~ 535 (934)
.|+++++.+++.+... ..+.+.|+.+... ....+..+++++. ...
T Consensus 81 ~~~~~vl~d~h~~~~~--------------~~~~r~l~~l~~~------------------~~~~~~~~i~~~~---~~~ 125 (489)
T CHL00195 81 TPALFLLKDFNRFLND--------------ISISRKLRNLSRI------------------LKTQPKTIIIIAS---ELN 125 (489)
T ss_pred CCcEEEEecchhhhcc--------------hHHHHHHHHHHHH------------------HHhCCCEEEEEcC---CCC
Confidence 4799999999988731 1344444443211 1112334444443 356
Q ss_pred CChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhccc
Q 002337 536 LPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSE 615 (934)
Q Consensus 536 Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r~~~~ 615 (934)
+|+.+.+.+ ..+++|.|+.+++.++++.+...... .. ....++.+++.+.|++-.++..++..+... . ..
T Consensus 126 ~p~el~~~~-~~~~~~lP~~~ei~~~l~~~~~~~~~---~~-~~~~~~~l~~~~~gls~~~~~~~~~~~~~~----~-~~ 195 (489)
T CHL00195 126 IPKELKDLI-TVLEFPLPTESEIKKELTRLIKSLNI---KI-DSELLENLTRACQGLSLERIRRVLSKIIAT----Y-KT 195 (489)
T ss_pred CCHHHHhce-eEEeecCcCHHHHHHHHHHHHHhcCC---CC-CHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----c-CC
Confidence 888888766 48999999999999999887653221 12 255678999999999999999988764211 1 01
Q ss_pred ccCCCCCchhhhh--h-hhcc-----CcchhhhhhcCCHHHHHHHHHhhhcccccccCCCCCccchhHHh-hcCCCCCCc
Q 002337 616 VDKNEPGESDLTA--K-VAHN-----DNSSIAATQVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLF-SSGLRKRSG 686 (934)
Q Consensus 616 ~~~~~~~~~~l~~--~-~~~~-----~~~~~~~~~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~-~~~~~~~~~ 686 (934)
.+... ....+.. . +.+. ......-..+.+.++++..+..... .+.... ..|+.+++|
T Consensus 196 ~~~~~-~~~i~~~k~q~~~~~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~-------------~~~~~~~~~gl~~pkG 261 (489)
T CHL00195 196 IDENS-IPLILEEKKQIISQTEILEFYSVNEKISDIGGLDNLKDWLKKRST-------------SFSKQASNYGLPTPRG 261 (489)
T ss_pred CChhh-HHHHHHHHHHHHhhhccccccCCCCCHHHhcCHHHHHHHHHHHHH-------------HhhHHHHhcCCCCCce
Confidence 11000 0000000 0 0000 0000001122333333333322110 011112 248888999
Q ss_pred ceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCc
Q 002337 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSG 766 (934)
Q Consensus 687 iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~ 766 (934)
+|||||||||||++|+++|++++.+|+.++++++.++|+|+++.+++++|+.|+..+||||||||||+++.++...++ +
T Consensus 262 ILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d-~ 340 (489)
T CHL00195 262 LLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGD-S 340 (489)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCC-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987654444 4
Q ss_pred hhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCC--CcCC
Q 002337 767 GVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKL--LEDV 844 (934)
Q Consensus 767 ~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~--~~~~ 844 (934)
+...++++++++.|+.. ..+|+||||||+++.||||++|+||||+.|+|++ |+.++|.+||+.++++... ..+.
T Consensus 341 ~~~~rvl~~lL~~l~~~---~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~l-P~~~eR~~Il~~~l~~~~~~~~~~~ 416 (489)
T CHL00195 341 GTTNRVLATFITWLSEK---KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDL-PSLEEREKIFKIHLQKFRPKSWKKY 416 (489)
T ss_pred hHHHHHHHHHHHHHhcC---CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCC-cCHHHHHHHHHHHHhhcCCCccccc
Confidence 56789999999999853 4679999999999999999999999999999998 7899999999999998753 3578
Q ss_pred CHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhhCCC--cCHHHHHHH
Q 002337 845 SLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPS--LSMAELKKY 922 (934)
Q Consensus 845 ~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps--vs~~~l~~y 922 (934)
++..+|+. |+|||||||.++|.+|+..|+.+. ..++.+||.+|+++++|+ +..++++.|
T Consensus 417 dl~~La~~-T~GfSGAdI~~lv~eA~~~A~~~~------------------~~lt~~dl~~a~~~~~Pls~~~~e~i~~~ 477 (489)
T CHL00195 417 DIKKLSKL-SNKFSGAEIEQSIIEAMYIAFYEK------------------REFTTDDILLALKQFIPLAQTEKEQIEAL 477 (489)
T ss_pred CHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHcC------------------CCcCHHHHHHHHHhcCCCcccCHHHHHHH
Confidence 99999999 699999999999999998887431 258999999999999997 467899999
Q ss_pred HHHHHH
Q 002337 923 ELLRDQ 928 (934)
Q Consensus 923 ~~~~~~ 928 (934)
++|...
T Consensus 478 ~~Wa~~ 483 (489)
T CHL00195 478 QNWASS 483 (489)
T ss_pred HHHHHc
Confidence 999875
No 12
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-42 Score=379.27 Aligned_cols=218 Identities=39% Similarity=0.635 Sum_probs=199.9
Q ss_pred cchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEe
Q 002337 671 LLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFF 749 (934)
Q Consensus 671 l~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfi 749 (934)
++.|+.|. .|-+-|+||||.||||||||+||+|+|.+.+.+|++..|+++-.+|+|...+.+|++|+.|++.+||||||
T Consensus 323 LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFI 402 (752)
T KOG0734|consen 323 LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFI 402 (752)
T ss_pred hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEE
Confidence 45566676 47788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHH
Q 002337 750 DELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRER 829 (934)
Q Consensus 750 DEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~ 829 (934)
||||++..+|..+ +. .+++..++|||.||||+.. +..|+||||||+|+.||+||.||||||++|.+|. ||-..|.+
T Consensus 403 DEiDavG~kR~~~-~~-~y~kqTlNQLLvEmDGF~q-NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~-PDv~GR~e 478 (752)
T KOG0734|consen 403 DEIDAVGGKRNPS-DQ-HYAKQTLNQLLVEMDGFKQ-NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPL-PDVRGRTE 478 (752)
T ss_pred echhhhcccCCcc-HH-HHHHHHHHHHHHHhcCcCc-CCceEEEeccCChhhhhHHhcCCCccceeEecCC-CCcccHHH
Confidence 9999999999653 22 3889999999999999976 5689999999999999999999999999999998 89999999
Q ss_pred HHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHh
Q 002337 830 VLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRE 909 (934)
Q Consensus 830 Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~ 909 (934)
||+.++++.+++.++|+.-||+- |.||+||||.|+++.|++.|+... ...|+++|++.|-.+
T Consensus 479 IL~~yl~ki~~~~~VD~~iiARG-T~GFsGAdLaNlVNqAAlkAa~dg-----------------a~~VtM~~LE~akDr 540 (752)
T KOG0734|consen 479 ILKLYLSKIPLDEDVDPKIIARG-TPGFSGADLANLVNQAALKAAVDG-----------------AEMVTMKHLEFAKDR 540 (752)
T ss_pred HHHHHHhcCCcccCCCHhHhccC-CCCCchHHHHHHHHHHHHHHHhcC-----------------cccccHHHHhhhhhh
Confidence 99999999999999999999999 699999999999999998887542 346899999999877
Q ss_pred h
Q 002337 910 L 910 (934)
Q Consensus 910 ~ 910 (934)
+
T Consensus 541 I 541 (752)
T KOG0734|consen 541 I 541 (752)
T ss_pred e
Confidence 6
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-42 Score=346.59 Aligned_cols=228 Identities=39% Similarity=0.684 Sum_probs=208.7
Q ss_pred CCccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcE
Q 002337 668 KLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746 (934)
Q Consensus 668 k~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~v 746 (934)
.+|.+||++|. .|+..|+|+|||||||||||++|+++|......||.|++++|..+|+|+..+-+|++|-.||..+|+|
T Consensus 164 eLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsi 243 (404)
T KOG0728|consen 164 ELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 243 (404)
T ss_pred hccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCce
Confidence 47999999998 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccCCCCCCCC-chhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHH
Q 002337 747 IFFDELDSLAPARGASGDS-GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVS 825 (934)
Q Consensus 747 lfiDEid~l~~~r~~~~~~-~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~ 825 (934)
||+||||++...|..++.. .....|.+-+||+++||++. .+++-||.||||.|.+||||+||||.|+.|+|| ||+++
T Consensus 244 ifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea-tknikvimatnridild~allrpgridrkiefp-~p~e~ 321 (404)
T KOG0728|consen 244 IFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA-TKNIKVIMATNRIDILDPALLRPGRIDRKIEFP-PPNEE 321 (404)
T ss_pred EeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc-ccceEEEEeccccccccHhhcCCCcccccccCC-CCCHH
Confidence 9999999999998643322 23456788899999999975 588999999999999999999999999999999 69999
Q ss_pred HHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHH
Q 002337 826 YRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVK 905 (934)
Q Consensus 826 ~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~ 905 (934)
+|.+||+++.+++++...+++..+|++. .|.+||++..+|.+|.+.|+|+. .+-+|++||+-
T Consensus 322 ar~~ilkihsrkmnl~rgi~l~kiaekm-~gasgaevk~vcteagm~alrer-----------------rvhvtqedfem 383 (404)
T KOG0728|consen 322 ARLDILKIHSRKMNLTRGINLRKIAEKM-PGASGAEVKGVCTEAGMYALRER-----------------RVHVTQEDFEM 383 (404)
T ss_pred HHHHHHHHhhhhhchhcccCHHHHHHhC-CCCccchhhhhhhhhhHHHHHHh-----------------hccccHHHHHH
Confidence 9999999999999999999999999995 99999999999999999999874 24699999999
Q ss_pred HHHhhCCCcC
Q 002337 906 VLRELSPSLS 915 (934)
Q Consensus 906 al~~~~psvs 915 (934)
|..++-..-+
T Consensus 384 av~kvm~k~~ 393 (404)
T KOG0728|consen 384 AVAKVMQKDS 393 (404)
T ss_pred HHHHHHhccc
Confidence 9988744333
No 14
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-40 Score=353.33 Aligned_cols=266 Identities=23% Similarity=0.304 Sum_probs=228.0
Q ss_pred EEEEecCCCeEEEEeCCeeEEEEcCCCCCCCCCCcccccCCCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEE
Q 002337 326 VVAVEPSEETVLRVNCTKTALVLGGSIPSALPPDLLISGSNDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLL 402 (934)
Q Consensus 326 v~~~~~~~~~~~~vd~~~T~lv~~~~~~s~~p~~~~~~~~~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL 402 (934)
|+.+-|.+ +|+..+.|.... .|+..| .+++|+..++.+..+.+++|+.+|+.| ++.+|+||||
T Consensus 125 Iv~vLp~~-----~Dp~V~~M~v~e------~PdvtY---~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLL 190 (406)
T COG1222 125 IVRVLPPE-----VDPRVSVMEVEE------KPDVTY---EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLL 190 (406)
T ss_pred eeeeCCCc-----cCchhheeeecc------CCCCCh---hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEe
Confidence 55665642 345555554433 346555 678899988888888999999999988 7899999999
Q ss_pred ECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccc
Q 002337 403 HGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQV 482 (934)
Q Consensus 403 ~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~ 482 (934)
|||||||||.||||+|++.++.|+.+.+++|+.+|.|+....++++|+.|+.++||||||||||+++.+|.+.+.
T Consensus 191 YGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t----- 265 (406)
T COG1222 191 YGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGT----- 265 (406)
T ss_pred eCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999998865543
Q ss_pred cchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHH
Q 002337 483 GLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVE 560 (934)
Q Consensus 483 ~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~ 560 (934)
+...||+..+-+++.|+ ++...+++|-||+|||+++-||||+.| ||++.|+||.||.++|.+
T Consensus 266 ~gDrEVQRTmleLL~ql----------------DGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~ 329 (406)
T COG1222 266 SGDREVQRTMLELLNQL----------------DGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAE 329 (406)
T ss_pred CchHHHHHHHHHHHHhc----------------cCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHH
Confidence 34568888888887653 445568999999999999999999999 899999999999999999
Q ss_pred HHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhh
Q 002337 561 MLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAA 640 (934)
Q Consensus 561 IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 640 (934)
||++|+++|.. ..++ +++.+|+.|.||+|+|++++|.+|++.|++..
T Consensus 330 Il~IHtrkM~l-~~dv----d~e~la~~~~g~sGAdlkaictEAGm~AiR~~---------------------------- 376 (406)
T COG1222 330 ILKIHTRKMNL-ADDV----DLELLARLTEGFSGADLKAICTEAGMFAIRER---------------------------- 376 (406)
T ss_pred HHHHHhhhccC-ccCc----CHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc----------------------------
Confidence 99999988753 4444 47899999999999999999999999999863
Q ss_pred hhcCCHHHHHHHHHhhhcc
Q 002337 641 TQVMGKEDLVKAMERSKKR 659 (934)
Q Consensus 641 ~~~i~~ed~~~aL~~~k~~ 659 (934)
...++++||.+|.+++...
T Consensus 377 R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 377 RDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred cCeecHHHHHHHHHHHHhc
Confidence 3467899999999987653
No 15
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-41 Score=340.34 Aligned_cols=225 Identities=38% Similarity=0.695 Sum_probs=206.5
Q ss_pred CCCccchhHHhhc-CCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCc
Q 002337 667 PKLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPC 745 (934)
Q Consensus 667 pk~pl~~~~~~~~-~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~ 745 (934)
..+|+.|.+++.. |+.||+|+|+|||||||||++|||+|+...+.||.|.|+++..+|.|+...-+|++|..|+.++|+
T Consensus 171 velplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenaps 250 (408)
T KOG0727|consen 171 VELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPS 250 (408)
T ss_pred HhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCc
Confidence 3589999999985 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccCCCCCC-CCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCH
Q 002337 746 VIFFDELDSLAPARGASG-DSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDV 824 (934)
Q Consensus 746 vlfiDEid~l~~~r~~~~-~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~ 824 (934)
||||||+|+++.+|-... .......|++-+||++|||+.. ..+|-||.||||.|.|||||+||||+|+.|+||+ ||.
T Consensus 251 iifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq-~~nvkvimatnradtldpallrpgrldrkiefpl-pdr 328 (408)
T KOG0727|consen 251 IIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ-TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL-PDR 328 (408)
T ss_pred EEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc-ccceEEEEecCcccccCHhhcCCccccccccCCC-Cch
Confidence 999999999999985322 2223456889999999999965 5789999999999999999999999999999999 888
Q ss_pred HHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHH
Q 002337 825 SYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFV 904 (934)
Q Consensus 825 ~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~ 904 (934)
.++.-++...+.++++.+++|++.+..+ ++..+||||.++|++|.+.|+|+. ...|...||+
T Consensus 329 rqkrlvf~titskm~ls~~vdle~~v~r-pdkis~adi~aicqeagm~avr~n-----------------ryvvl~kd~e 390 (408)
T KOG0727|consen 329 RQKRLVFSTITSKMNLSDEVDLEDLVAR-PDKISGADINAICQEAGMLAVREN-----------------RYVVLQKDFE 390 (408)
T ss_pred hhhhhhHHhhhhcccCCcccCHHHHhcC-ccccchhhHHHHHHHHhHHHHHhc-----------------ceeeeHHHHH
Confidence 8999999999999999999999999998 799999999999999999999863 2468899999
Q ss_pred HHHHhhC
Q 002337 905 KVLRELS 911 (934)
Q Consensus 905 ~al~~~~ 911 (934)
+|.+...
T Consensus 391 ~ay~~~v 397 (408)
T KOG0727|consen 391 KAYKTVV 397 (408)
T ss_pred HHHHhhc
Confidence 9998753
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-40 Score=335.95 Aligned_cols=227 Identities=38% Similarity=0.684 Sum_probs=207.7
Q ss_pred CCCCccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCC
Q 002337 666 APKLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARP 744 (934)
Q Consensus 666 ~pk~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p 744 (934)
+..+|+.|++.|. .|+++|+|+|+|||||||||++|+|.|...++.|+.+.+++|..+|+|+..+.+|+.|..|+..+|
T Consensus 186 AiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP 265 (424)
T KOG0652|consen 186 AIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAP 265 (424)
T ss_pred HhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCC
Confidence 3458999999998 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccccccccCCCCCCCCc-hhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCC
Q 002337 745 CVIFFDELDSLAPARGASGDSG-GVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSD 823 (934)
Q Consensus 745 ~vlfiDEid~l~~~r~~~~~~~-~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~ 823 (934)
+||||||+|.+..+|-.+...+ ....|.+-+||+++||+.. +.+|-||+||||.+.+||||+|.||+|+.|+||. |+
T Consensus 266 ~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss-~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~-Pn 343 (424)
T KOG0652|consen 266 TIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS-DDRVKVIAATNRVDILDPALLRSGRLDRKIEFPH-PN 343 (424)
T ss_pred eEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC-ccceEEEeecccccccCHHHhhcccccccccCCC-CC
Confidence 9999999999999997543332 2345777889999999975 5789999999999999999999999999999998 88
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHH
Q 002337 824 VSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDF 903 (934)
Q Consensus 824 ~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df 903 (934)
++.|.+|++++.++++...|++++++|+. |++|+||...++|-+|.|.|+||. ...|+.+||
T Consensus 344 e~aRarIlQIHsRKMnv~~DvNfeELaRs-TddFNGAQcKAVcVEAGMiALRr~-----------------atev~heDf 405 (424)
T KOG0652|consen 344 EEARARILQIHSRKMNVSDDVNFEELARS-TDDFNGAQCKAVCVEAGMIALRRG-----------------ATEVTHEDF 405 (424)
T ss_pred hHHHHHHHHHhhhhcCCCCCCCHHHHhhc-ccccCchhheeeehhhhHHHHhcc-----------------cccccHHHH
Confidence 99999999999999999999999999998 799999999999999999999884 235899999
Q ss_pred HHHHHhhCC
Q 002337 904 VKVLRELSP 912 (934)
Q Consensus 904 ~~al~~~~p 912 (934)
.+++.++..
T Consensus 406 megI~eVqa 414 (424)
T KOG0652|consen 406 MEGILEVQA 414 (424)
T ss_pred HHHHHHHHH
Confidence 999987743
No 17
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-40 Score=363.38 Aligned_cols=246 Identities=36% Similarity=0.638 Sum_probs=216.2
Q ss_pred hHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCc-EEEecCccccccccchhhhhhHHHHHHHHh--------CC
Q 002337 674 KDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN-FLSVKGPELINMYIGESEKNVRDIFQKARS--------AR 743 (934)
Q Consensus 674 ~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~-~i~v~~~~l~~~~~Gese~~v~~lf~~A~~--------~~ 743 (934)
|++.. .|+..-+|+|||||||||||++|+.+...+++. ---|+||+++++|+|+||+|+|.+|..|.. ..
T Consensus 245 p~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~Sg 324 (744)
T KOG0741|consen 245 PEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSG 324 (744)
T ss_pred HHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCC
Confidence 44444 488888999999999999999999999998763 566899999999999999999999999864 12
Q ss_pred CcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCC
Q 002337 744 PCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSD 823 (934)
Q Consensus 744 p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~ 823 (934)
--||+|||||+++.+||+.+++.|+.+.|+||||+.|||+.. -.+++|||-|||.|+||+||+|||||...+++.+ ||
T Consensus 325 LHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq-LNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsL-PD 402 (744)
T KOG0741|consen 325 LHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ-LNNILVIGMTNRKDLIDEALLRPGRLEVQMEISL-PD 402 (744)
T ss_pred ceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh-hhcEEEEeccCchhhHHHHhcCCCceEEEEEEeC-CC
Confidence 259999999999999999988899999999999999999975 5789999999999999999999999999999999 89
Q ss_pred HHHHHHHHHHHHhcC----CCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCccccc
Q 002337 824 VSYRERVLKALTRKF----KLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVE 899 (934)
Q Consensus 824 ~~~r~~Il~~~~~~~----~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it 899 (934)
++.|.+|++++++++ .+..|||+.++|+. |.+||||+|+.|++.|.-.|+.|.+..... ............|+
T Consensus 403 E~gRlQIl~IHT~rMre~~~l~~dVdl~elA~l-TKNfSGAEleglVksA~S~A~nR~vk~~~~--~~~~~~~~e~lkV~ 479 (744)
T KOG0741|consen 403 EKGRLQILKIHTKRMRENNKLSADVDLKELAAL-TKNFSGAELEGLVKSAQSFAMNRHVKAGGK--VEVDPVAIENLKVT 479 (744)
T ss_pred ccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHH-hcCCchhHHHHHHHHHHHHHHHhhhccCcc--eecCchhhhheeec
Confidence 999999999999987 36789999999999 699999999999999999999999865421 11112234456899
Q ss_pred HHHHHHHHHhhCCC--cCHHHHHHHHH
Q 002337 900 YDDFVKVLRELSPS--LSMAELKKYEL 924 (934)
Q Consensus 900 ~~df~~al~~~~ps--vs~~~l~~y~~ 924 (934)
++||..||.+++|. ++++++++|..
T Consensus 480 r~DFl~aL~dVkPAFG~see~l~~~~~ 506 (744)
T KOG0741|consen 480 RGDFLNALEDVKPAFGISEEDLERFVM 506 (744)
T ss_pred HHHHHHHHHhcCcccCCCHHHHHHHHh
Confidence 99999999999997 78999998865
No 18
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-39 Score=348.24 Aligned_cols=276 Identities=32% Similarity=0.526 Sum_probs=230.2
Q ss_pred CCHHHHHHHHHhhhcccccccCCCCCccchhHHhhc--CCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccc
Q 002337 644 MGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSS--GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 721 (934)
Q Consensus 644 i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~--~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~ 721 (934)
++++|+ .+|+.+++.... ..-+|+.+|++|.. -++++.|||||||||||||++|||+|++.+++|+.|.++.+.
T Consensus 89 v~f~DI-ggLe~v~~~L~e---~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt 164 (386)
T KOG0737|consen 89 VSFDDI-GGLEEVKDALQE---LVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLT 164 (386)
T ss_pred eehhhc-cchHHHHHHHHH---HHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccc
Confidence 445554 455555443322 22489999999963 578899999999999999999999999999999999999999
Q ss_pred ccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCC-CEEEEEEcCCCC
Q 002337 722 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQ-DLFIIGASNRPD 800 (934)
Q Consensus 722 ~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~-~v~vI~aTNrp~ 800 (934)
++|+|++++.++.+|..|.+.+||||||||+|++...|+ ...++++..+.+|++...||+....+ +|+|+||||||.
T Consensus 165 ~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~--s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~ 242 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR--STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF 242 (386)
T ss_pred hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc--cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCc
Confidence 999999999999999999999999999999999999993 34567889999999999999976544 699999999999
Q ss_pred CCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002337 801 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 880 (934)
Q Consensus 801 ~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~ 880 (934)
.+|.|++| |+.+.++|++ |+.++|..||+.++++-++.+++|+.++|.. |+||||.||.++|+.|+...+|+.+..
T Consensus 243 DlDeAiiR--R~p~rf~V~l-P~~~qR~kILkviLk~e~~e~~vD~~~iA~~-t~GySGSDLkelC~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 243 DLDEAIIR--RLPRRFHVGL-PDAEQRRKILKVILKKEKLEDDVDLDEIAQM-TEGYSGSDLKELCRLAALRPIRELLVS 318 (386)
T ss_pred cHHHHHHH--hCcceeeeCC-CchhhHHHHHHHHhcccccCcccCHHHHHHh-cCCCcHHHHHHHHHHHhHhHHHHHHHh
Confidence 99999999 9999999999 7899999999999999999999999999999 699999999999999999999998876
Q ss_pred c--CCCCCC---------ccccccCcccccHHHHHHHHHhhCCCcCHHH--HHHHHHHHHHh
Q 002337 881 S--DSNSDS---------SRIDQADSVVVEYDDFVKVLRELSPSLSMAE--LKKYELLRDQF 929 (934)
Q Consensus 881 ~--~~~~~~---------~~~~~~~~~~it~~df~~al~~~~psvs~~~--l~~y~~~~~~~ 929 (934)
. ..+... ........++++++||..|...+.+|++.+. ....+.|....
T Consensus 319 ~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~ 380 (386)
T KOG0737|consen 319 ETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELY 380 (386)
T ss_pred cccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhh
Confidence 4 100000 0000122478999999999999988865443 34455555544
No 19
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-39 Score=378.78 Aligned_cols=221 Identities=41% Similarity=0.723 Sum_probs=200.4
Q ss_pred cchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEe
Q 002337 671 LLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFF 749 (934)
Q Consensus 671 l~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfi 749 (934)
++.|+.|. .|.+.|+|+||.||||||||+||||+|.|.+.||++++++|++.+++|....++|++|..||..+|||||+
T Consensus 330 LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifi 409 (774)
T KOG0731|consen 330 LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFI 409 (774)
T ss_pred hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEe
Confidence 56777777 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCC--CCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHH
Q 002337 750 DELDSLAPARGA--SGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYR 827 (934)
Q Consensus 750 DEid~l~~~r~~--~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r 827 (934)
||||.++.+|++ .+..+.-.+..+||||.+|||+... ..|+|+|+|||||.||+||+||||||+.|++++ |+...|
T Consensus 410 deida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~-p~~~~r 487 (774)
T KOG0731|consen 410 DEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVIVLAATNRPDILDPALLRPGRFDRQIQIDL-PDVKGR 487 (774)
T ss_pred cccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEEEEeccCCccccCHHhcCCCccccceeccC-Cchhhh
Confidence 999999999952 2222333466899999999999764 789999999999999999999999999999998 899999
Q ss_pred HHHHHHHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHH
Q 002337 828 ERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKV 906 (934)
Q Consensus 828 ~~Il~~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~a 906 (934)
.+|++.|.++.++. +++|+..+|.. |+||+||||.++|++|+..|+|+.. ..|+.+||+.|
T Consensus 488 ~~i~~~h~~~~~~~~e~~dl~~~a~~-t~gf~gadl~n~~neaa~~a~r~~~-----------------~~i~~~~~~~a 549 (774)
T KOG0731|consen 488 ASILKVHLRKKKLDDEDVDLSKLASL-TPGFSGADLANLCNEAALLAARKGL-----------------REIGTKDLEYA 549 (774)
T ss_pred HHHHHHHhhccCCCcchhhHHHHHhc-CCCCcHHHHHhhhhHHHHHHHHhcc-----------------CccchhhHHHH
Confidence 99999999999885 88999999999 6999999999999999999998742 35899999999
Q ss_pred HHhhC
Q 002337 907 LRELS 911 (934)
Q Consensus 907 l~~~~ 911 (934)
++.+.
T Consensus 550 ~~Rvi 554 (774)
T KOG0731|consen 550 IERVI 554 (774)
T ss_pred HHHHh
Confidence 99553
No 20
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-40 Score=337.71 Aligned_cols=224 Identities=37% Similarity=0.669 Sum_probs=205.1
Q ss_pred CCCccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCc
Q 002337 667 PKLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPC 745 (934)
Q Consensus 667 pk~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~ 745 (934)
..+|+.||++|. .|+++|+|++|||+||||||+||||+|+...+.|+.+-+++|+.+|.|+..+.+|++|+.|...+|+
T Consensus 201 vELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apS 280 (440)
T KOG0726|consen 201 VELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPS 280 (440)
T ss_pred hcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCc
Confidence 358999999998 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccCCCCCCCCc-hhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCH
Q 002337 746 VIFFDELDSLAPARGASGDSG-GVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDV 824 (934)
Q Consensus 746 vlfiDEid~l~~~r~~~~~~~-~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~ 824 (934)
|+||||||++..+|-.+...+ ....|.+-+||+++||+.. ..+|-||.|||+.+.|||||.||||.|+.|.|++ ||.
T Consensus 281 IvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds-rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~-pDe 358 (440)
T KOG0726|consen 281 IVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS-RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL-PDE 358 (440)
T ss_pred eEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc-cCCeEEEEecccccccCHhhcCCCccccccccCC-Cch
Confidence 999999999999996433222 2345666789999999965 6889999999999999999999999999999998 899
Q ss_pred HHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHH
Q 002337 825 SYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFV 904 (934)
Q Consensus 825 ~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~ 904 (934)
..+..||.+++.++.+..+|+++.+.-. .+.+|||||.++|.+|.+.|+|+.. ..++++||.
T Consensus 359 ~TkkkIf~IHTs~Mtl~~dVnle~li~~-kddlSGAdIkAictEaGllAlRerR-----------------m~vt~~DF~ 420 (440)
T KOG0726|consen 359 KTKKKIFQIHTSRMTLAEDVNLEELIMT-KDDLSGADIKAICTEAGLLALRERR-----------------MKVTMEDFK 420 (440)
T ss_pred hhhceeEEEeecccchhccccHHHHhhc-ccccccccHHHHHHHHhHHHHHHHH-----------------hhccHHHHH
Confidence 9999999999999999999999999876 6999999999999999999998752 358999999
Q ss_pred HHHHhh
Q 002337 905 KVLREL 910 (934)
Q Consensus 905 ~al~~~ 910 (934)
+|..++
T Consensus 421 ka~e~V 426 (440)
T KOG0726|consen 421 KAKEKV 426 (440)
T ss_pred HHHHHH
Confidence 998876
No 21
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-39 Score=326.85 Aligned_cols=224 Identities=38% Similarity=0.727 Sum_probs=204.0
Q ss_pred CCccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcE
Q 002337 668 KLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746 (934)
Q Consensus 668 k~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~v 746 (934)
.+|+.||+.|. .|+.||+|+|+|||||||||++|+|+|+..++.||.|-+++|..+|+|+...-+|++|+.||....||
T Consensus 194 e~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkaci 273 (435)
T KOG0729|consen 194 ELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACI 273 (435)
T ss_pred hccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEE
Confidence 47999999997 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccCCCCC--CCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCH
Q 002337 747 IFFDELDSLAPARGAS--GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDV 824 (934)
Q Consensus 747 lfiDEid~l~~~r~~~--~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~ 824 (934)
|||||||.+.+.|-.. +... ...|.+-+|++++||+.. ..++-|+.|||||+.|||||+||||+|+.++|.+ ||-
T Consensus 274 iffdeidaiggarfddg~ggdn-evqrtmleli~qldgfdp-rgnikvlmatnrpdtldpallrpgrldrkvef~l-pdl 350 (435)
T KOG0729|consen 274 IFFDEIDAIGGARFDDGAGGDN-EVQRTMLELINQLDGFDP-RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL-PDL 350 (435)
T ss_pred EEeeccccccCccccCCCCCcH-HHHHHHHHHHHhccCCCC-CCCeEEEeecCCCCCcCHhhcCCcccccceeccC-Ccc
Confidence 9999999999988532 2222 345677788999999965 5789999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHH
Q 002337 825 SYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFV 904 (934)
Q Consensus 825 ~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~ 904 (934)
+.|..||+++.+.+....++-++-+|+.| .+-+||||+.+|.+|.|.|++... ...|.+||.
T Consensus 351 egrt~i~kihaksmsverdir~ellarlc-pnstgaeirsvcteagmfairarr-----------------k~atekdfl 412 (435)
T KOG0729|consen 351 EGRTHIFKIHAKSMSVERDIRFELLARLC-PNSTGAEIRSVCTEAGMFAIRARR-----------------KVATEKDFL 412 (435)
T ss_pred cccceeEEEeccccccccchhHHHHHhhC-CCCcchHHHHHHHHhhHHHHHHHh-----------------hhhhHHHHH
Confidence 99999999999999999999999999999 899999999999999999997542 257899999
Q ss_pred HHHHhhCC
Q 002337 905 KVLRELSP 912 (934)
Q Consensus 905 ~al~~~~p 912 (934)
+|+.++-.
T Consensus 413 ~av~kvvk 420 (435)
T KOG0729|consen 413 DAVNKVVK 420 (435)
T ss_pred HHHHHHHH
Confidence 99987643
No 22
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=353.10 Aligned_cols=226 Identities=37% Similarity=0.671 Sum_probs=205.3
Q ss_pred CCccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcE
Q 002337 668 KLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746 (934)
Q Consensus 668 k~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~v 746 (934)
.+|+.++++|. .|+.+++++|||||||||||++|+++|++++.+|+.+.++++..+|+|+++..++++|..|+..+|||
T Consensus 162 ~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~I 241 (398)
T PTZ00454 162 ELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSI 241 (398)
T ss_pred HHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeE
Confidence 36889999998 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccCCCCCCC-CchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHH
Q 002337 747 IFFDELDSLAPARGASGD-SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVS 825 (934)
Q Consensus 747 lfiDEid~l~~~r~~~~~-~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~ 825 (934)
|||||+|.++.+|..... ......+++.++|.+||++.. ..+++||+|||+|+.||||++||||||+.|+|++ |+.+
T Consensus 242 LfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~-~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~-P~~~ 319 (398)
T PTZ00454 242 IFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ-TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL-PDRR 319 (398)
T ss_pred EEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC-CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCC-cCHH
Confidence 999999999988853322 123456889999999999864 4679999999999999999999999999999997 8999
Q ss_pred HHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHH
Q 002337 826 YRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVK 905 (934)
Q Consensus 826 ~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~ 905 (934)
+|..||+.+++++++..++++..+|.. |+|||||||.++|++|++.|+++. ...|+++||++
T Consensus 320 ~R~~Il~~~~~~~~l~~dvd~~~la~~-t~g~sgaDI~~l~~eA~~~A~r~~-----------------~~~i~~~df~~ 381 (398)
T PTZ00454 320 QKRLIFQTITSKMNLSEEVDLEDFVSR-PEKISAADIAAICQEAGMQAVRKN-----------------RYVILPKDFEK 381 (398)
T ss_pred HHHHHHHHHHhcCCCCcccCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHcC-----------------CCccCHHHHHH
Confidence 999999999999999999999999999 699999999999999999999763 13699999999
Q ss_pred HHHhhCCC
Q 002337 906 VLRELSPS 913 (934)
Q Consensus 906 al~~~~ps 913 (934)
|++++...
T Consensus 382 A~~~v~~~ 389 (398)
T PTZ00454 382 GYKTVVRK 389 (398)
T ss_pred HHHHHHhc
Confidence 99998664
No 23
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=360.22 Aligned_cols=220 Identities=40% Similarity=0.747 Sum_probs=199.6
Q ss_pred cchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEe
Q 002337 671 LLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFF 749 (934)
Q Consensus 671 l~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfi 749 (934)
++.|..|. .|.+-|+|++|+||||||||++||++|.+.+.||+++++++++.+|+|-....+|++|.+|++.+||||||
T Consensus 169 Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFI 248 (596)
T COG0465 169 LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFI 248 (596)
T ss_pred HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEE
Confidence 34445554 46788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCC-CCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHH
Q 002337 750 DELDSLAPARGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRE 828 (934)
Q Consensus 750 DEid~l~~~r~~~-~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~ 828 (934)
||+|++..+|+.+ |......+..++|||.||||... +..|+||++|||||.+||||+||||||+.|.++. ||-..|+
T Consensus 249 DEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~-~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~-PDi~gRe 326 (596)
T COG0465 249 DEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG-NEGVIVIAATNRPDVLDPALLRPGRFDRQILVEL-PDIKGRE 326 (596)
T ss_pred ehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC-CCceEEEecCCCcccchHhhcCCCCcceeeecCC-cchhhHH
Confidence 9999999999744 33333345599999999999974 5789999999999999999999999999999998 8999999
Q ss_pred HHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHH
Q 002337 829 RVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLR 908 (934)
Q Consensus 829 ~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~ 908 (934)
+|++.|.++.++.+++|+..+|+. |.||+|||+.+++++|++.|+|+. ...|++.||.+|..
T Consensus 327 ~IlkvH~~~~~l~~~Vdl~~iAr~-tpGfsGAdL~nl~NEAal~aar~n-----------------~~~i~~~~i~ea~d 388 (596)
T COG0465 327 QILKVHAKNKPLAEDVDLKKIARG-TPGFSGADLANLLNEAALLAARRN-----------------KKEITMRDIEEAID 388 (596)
T ss_pred HHHHHHhhcCCCCCcCCHHHHhhh-CCCcccchHhhhHHHHHHHHHHhc-----------------CeeEeccchHHHHH
Confidence 999999999999999999999999 699999999999999999999874 23689999999998
Q ss_pred hh
Q 002337 909 EL 910 (934)
Q Consensus 909 ~~ 910 (934)
++
T Consensus 389 rv 390 (596)
T COG0465 389 RV 390 (596)
T ss_pred HH
Confidence 87
No 24
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-36 Score=328.97 Aligned_cols=422 Identities=19% Similarity=0.274 Sum_probs=304.4
Q ss_pred CCcCCchHHHHHHHHHhhccCCCc----cccCCCCceEEEECCCCCcHHHHHHHHHHHhCC-cEEEEecCccccccccch
Q 002337 367 DFVPLQGDTVKILASILAPTLCPS----VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGI-HVVEYSCHNLMASSERKT 441 (934)
Q Consensus 367 ~~~~~~~~~~~~L~~il~p~l~p~----~~~~~~~~~VLL~GppGtGKTtLaralA~elg~-~~~~I~~~~L~~~~~g~~ 441 (934)
+++|++.+..+...........|. .++++.-+|||||||||||||.+||.|...|++ .--.||++++..+|.|++
T Consensus 222 GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeS 301 (744)
T KOG0741|consen 222 GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGES 301 (744)
T ss_pred ccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhccc
Confidence 456666655444444443344443 335677789999999999999999999999976 346689999999999999
Q ss_pred HHHHHHHHHHhhc--------CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCch
Q 002337 442 SAALAQAFNTAQS--------YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPV 513 (934)
Q Consensus 442 e~~L~~~f~~A~~--------~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~ 513 (934)
+.++|.+|..|+. ..-.||++||||+++..|.. ..+..+....|.. +++ .
T Consensus 302 E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS---~~g~TGVhD~VVN---QLL----------------s 359 (744)
T KOG0741|consen 302 EENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGS---MAGSTGVHDTVVN---QLL----------------S 359 (744)
T ss_pred HHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCC---CCCCCCccHHHHH---HHH----------------H
Confidence 9999999998873 12469999999999986533 3343444444433 332 2
Q ss_pred hhhhhhhcccEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC
Q 002337 514 KEIEKICRQQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (934)
Q Consensus 514 ~~~~~~~~~~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G 591 (934)
.+++...-.+++|||.||+.+-||++|+| ||.-.+++..||++.|++|++++++.|.. +.-.+.+.+++++|..|..
T Consensus 360 KmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre-~~~l~~dVdl~elA~lTKN 438 (744)
T KOG0741|consen 360 KMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRE-NNKLSADVDLKELAALTKN 438 (744)
T ss_pred hcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhh-cCCCCCCcCHHHHHHHhcC
Confidence 34455557889999999999999999999 79888999999999999999999987754 2234456668999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhcccccc--------
Q 002337 592 FMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASA-------- 663 (934)
Q Consensus 592 fv~~DL~~L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~~~~~~-------- 663 (934)
|+|+.|.-|++.|...|+.|....-.+. ...........++++||..||+.++..+..+
T Consensus 439 fSGAEleglVksA~S~A~nR~vk~~~~~-------------~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 439 FSGAELEGLVKSAQSFAMNRHVKAGGKV-------------EVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred CchhHHHHHHHHHHHHHHHhhhccCcce-------------ecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 9999999999999988887753211110 0111223456789999999999887643211
Q ss_pred -cCCCCCccc------hhHHhh-----cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhh--
Q 002337 664 -LGAPKLPLL------HKDLFS-----SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESE-- 729 (934)
Q Consensus 664 -i~~pk~pl~------~~~~~~-----~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese-- 729 (934)
-|...|--. +..++- ....+-..+||.||||+|||+||..+|...+.||+.+-.++-. +|-+|
T Consensus 506 ~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsa 582 (744)
T KOG0741|consen 506 MNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDM---IGLSESA 582 (744)
T ss_pred hCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHH
Confidence 011222222 222221 1344456899999999999999999999999999998776532 44444
Q ss_pred --hhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCCh-hh
Q 002337 730 --KNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDP-AL 806 (934)
Q Consensus 730 --~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~-al 806 (934)
..++.+|+.|.+..-+||++|+|+.|..=- .-.-.+..-++..|+..+......+++.+|+|||.+-+.|.. .+
T Consensus 583 Kc~~i~k~F~DAYkS~lsiivvDdiErLiD~v---pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i 659 (744)
T KOG0741|consen 583 KCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV---PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGI 659 (744)
T ss_pred HHHHHHHHHHHhhcCcceEEEEcchhhhhccc---ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCH
Confidence 348999999999988999999999886211 111235567888888888888777889999999998764432 34
Q ss_pred hCCCCcceeeeecCCCCHHHHHHHHH
Q 002337 807 LRPGRFDKLLYVGVNSDVSYRERVLK 832 (934)
Q Consensus 807 lrpGRfd~~i~v~~Pp~~~~r~~Il~ 832 (934)
+. -|+..|.+|--...++-.+++.
T Consensus 660 ~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 660 LD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred HH--hhhheeecCccCchHHHHHHHH
Confidence 44 6888899874233344444443
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=310.76 Aligned_cols=210 Identities=34% Similarity=0.592 Sum_probs=186.5
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCC
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGA 761 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~ 761 (934)
..|++||||||||||||++|||+|++.+.+|+.+++++|++.|+|+..+.++++|++|+..+|||+||||+|+++-.|+-
T Consensus 149 WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRry 228 (368)
T COG1223 149 WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRY 228 (368)
T ss_pred cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred CCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCC
Q 002337 762 SGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL 841 (934)
Q Consensus 762 ~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~ 841 (934)
+.-.+. ..+++|.||++|||+.. +..|+.|||||+|+.||||+++ ||...|+|.+ |+.++|..|++.+.+++++.
T Consensus 229 QelRGD-VsEiVNALLTelDgi~e-neGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~L-P~~eEr~~ile~y~k~~Plp 303 (368)
T COG1223 229 QELRGD-VSEIVNALLTELDGIKE-NEGVVTIAATNRPELLDPAIRS--RFEEEIEFKL-PNDEERLEILEYYAKKFPLP 303 (368)
T ss_pred HHhccc-HHHHHHHHHHhccCccc-CCceEEEeecCChhhcCHHHHh--hhhheeeeeC-CChHHHHHHHHHHHHhCCCc
Confidence 433333 35799999999999985 6789999999999999999999 9999999999 78899999999999999999
Q ss_pred cCCCHHHHHhhCCCCCCHHHHHHH-HHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhhCCCc
Q 002337 842 EDVSLYSIAKKCPPNFTGADMYAL-CADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSL 914 (934)
Q Consensus 842 ~~~~l~~la~~~t~g~sgaDl~~l-~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~psv 914 (934)
-+.++..+++. |.||||+||..- ++.|...|+.+ +...|+.+||+.|+++-+++-
T Consensus 304 v~~~~~~~~~~-t~g~SgRdikekvlK~aLh~Ai~e-----------------d~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 304 VDADLRYLAAK-TKGMSGRDIKEKVLKTALHRAIAE-----------------DREKVEREDIEKALKKERKRR 359 (368)
T ss_pred cccCHHHHHHH-hCCCCchhHHHHHHHHHHHHHHHh-----------------chhhhhHHHHHHHHHhhcccc
Confidence 99999999999 699999999754 44444455433 223689999999999876653
No 26
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-37 Score=342.41 Aligned_cols=274 Identities=37% Similarity=0.587 Sum_probs=233.4
Q ss_pred CCHHHHHHHHHhhhcccccccCCCCCccchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccccc
Q 002337 644 MGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM 723 (934)
Q Consensus 644 i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~ 723 (934)
+.|+|+ .+++.+++.. .+...||+..+++|..-..+.+++||+||||+|||++++|+|.++++.|+.++++.|.++
T Consensus 150 v~~~di-~gl~~~k~~l---~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 150 VGWDDI-AGLEDAKQSL---KEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred ccccCC-cchhhHHHHh---hhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 455555 3444443322 234459999999999888889999999999999999999999999999999999999999
Q ss_pred ccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCC-CCEEEEEEcCCCCCC
Q 002337 724 YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSS-QDLFIIGASNRPDLI 802 (934)
Q Consensus 724 ~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~-~~v~vI~aTNrp~~l 802 (934)
|+|++|+.++.+|+-|+..+|+|+||||+|+++.+|. ....+..+|+..++|.++++..... .+|+||||||+||.+
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs--~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~ 303 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRS--DNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL 303 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcC--CcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHH
Confidence 9999999999999999999999999999999999994 3445567899999999999987544 479999999999999
Q ss_pred ChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcC-CCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 002337 803 DPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF-KLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSS 881 (934)
Q Consensus 803 D~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~-~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~ 881 (934)
|.|++| ||-+.+|||+ |+.+.|..+|+.++++. ....+.|+..+++. |+||+|+||.++|.+|++.-++..-...
T Consensus 304 Dea~~R--rf~kr~yipl-Pd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~-Tegysgsdi~~l~kea~~~p~r~~~~~~ 379 (428)
T KOG0740|consen 304 DEAARR--RFVKRLYIPL-PDYETRSLLWKQLLKEQPNGLSDLDISLLAKV-TEGYSGSDITALCKEAAMGPLRELGGTT 379 (428)
T ss_pred HHHHHH--HhhceeeecC-CCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH-hcCcccccHHHHHHHhhcCchhhcccch
Confidence 999999 9999999998 89999999999999887 33456789999999 6999999999999999988776543210
Q ss_pred CCCCCCccccccCcccccHHHHHHHHHhhCCCcCHHHHHHHHHHHHHhcc
Q 002337 882 DSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEG 931 (934)
Q Consensus 882 ~~~~~~~~~~~~~~~~it~~df~~al~~~~psvs~~~l~~y~~~~~~~~~ 931 (934)
. -........+.++..||++|++.++|+++.+.+++|+.|..+|..
T Consensus 380 ~----~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~ 425 (428)
T KOG0740|consen 380 D----LEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGS 425 (428)
T ss_pred h----hhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhcc
Confidence 1 011222345689999999999999999999999999999999965
No 27
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=4.6e-36 Score=342.54 Aligned_cols=229 Identities=43% Similarity=0.727 Sum_probs=207.2
Q ss_pred CccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEE
Q 002337 669 LPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVI 747 (934)
Q Consensus 669 ~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vl 747 (934)
+|+.++++|. .|+.++.++|||||||||||++|+++|++++.+|+.++++++..+|+|++++.++.+|+.|+...||||
T Consensus 149 ~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il 228 (389)
T PRK03992 149 LPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSII 228 (389)
T ss_pred HHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEE
Confidence 6888999998 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccCCCCCCCCc-hhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHH
Q 002337 748 FFDELDSLAPARGASGDSG-GVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSY 826 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~-~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~ 826 (934)
||||+|.++++|+..+.++ ....+.+.+++.++|++.. ..+++||+|||+++.+|++++||||||+.|+|++ |+.++
T Consensus 229 fiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~-~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~-P~~~~ 306 (389)
T PRK03992 229 FIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP-RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPL-PDEEG 306 (389)
T ss_pred EEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC-CCCEEEEEecCChhhCCHHHcCCccCceEEEECC-CCHHH
Confidence 9999999998886543332 2356778899999999864 4689999999999999999999999999999996 89999
Q ss_pred HHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHH
Q 002337 827 RERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKV 906 (934)
Q Consensus 827 r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~a 906 (934)
|.+||+.+++++++..++++..+|.. |+||+|+||.++|++|++.|+++. ...|+.+||.+|
T Consensus 307 R~~Il~~~~~~~~~~~~~~~~~la~~-t~g~sgadl~~l~~eA~~~a~~~~-----------------~~~i~~~d~~~A 368 (389)
T PRK03992 307 RLEILKIHTRKMNLADDVDLEELAEL-TEGASGADLKAICTEAGMFAIRDD-----------------RTEVTMEDFLKA 368 (389)
T ss_pred HHHHHHHHhccCCCCCcCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHcC-----------------CCCcCHHHHHHH
Confidence 99999999999999889999999999 699999999999999999998762 125899999999
Q ss_pred HHhhCCCcCHH
Q 002337 907 LRELSPSLSMA 917 (934)
Q Consensus 907 l~~~~psvs~~ 917 (934)
+..++|+...+
T Consensus 369 ~~~~~~~~~~~ 379 (389)
T PRK03992 369 IEKVMGKEEKD 379 (389)
T ss_pred HHHHhcccccc
Confidence 99999875443
No 28
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-36 Score=343.59 Aligned_cols=234 Identities=43% Similarity=0.742 Sum_probs=216.8
Q ss_pred CCccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCC-Cc
Q 002337 668 KLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSAR-PC 745 (934)
Q Consensus 668 k~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~-p~ 745 (934)
.+|+.++..|. .+.++++++|+|||||||||.+++++|++.++.++.+++++++++|.||+++++|..|+.|...+ |+
T Consensus 201 ~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~ps 280 (693)
T KOG0730|consen 201 ELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPS 280 (693)
T ss_pred HhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCe
Confidence 36888888887 59999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHH
Q 002337 746 VIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVS 825 (934)
Q Consensus 746 vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~ 825 (934)
+|||||+|+++|+|....+ +.+|++.||++.|||+.. ..+++||+|||||+.|||+++| ||||+.+.+++ |+..
T Consensus 281 ii~IdEld~l~p~r~~~~~---~e~Rv~sqlltL~dg~~~-~~~vivl~atnrp~sld~alRR-gRfd~ev~Igi-P~~~ 354 (693)
T KOG0730|consen 281 IIFIDELDALCPKREGADD---VESRVVSQLLTLLDGLKP-DAKVIVLAATNRPDSLDPALRR-GRFDREVEIGI-PGSD 354 (693)
T ss_pred eEeHHhHhhhCCcccccch---HHHHHHHHHHHHHhhCcC-cCcEEEEEecCCccccChhhhc-CCCcceeeecC-CCch
Confidence 9999999999999975433 678999999999999974 5789999999999999999999 99999999999 8899
Q ss_pred HHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHH
Q 002337 826 YRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVK 905 (934)
Q Consensus 826 ~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~ 905 (934)
.|.+|++.++++++...++++..+|.. |+||+||||.++|++|++.|+++ ++++|..
T Consensus 355 ~RldIl~~l~k~~~~~~~~~l~~iA~~-thGyvGaDL~~l~~ea~~~~~r~----------------------~~~~~~~ 411 (693)
T KOG0730|consen 355 GRLDILRVLTKKMNLLSDVDLEDIAVS-THGYVGADLAALCREASLQATRR----------------------TLEIFQE 411 (693)
T ss_pred hHHHHHHHHHHhcCCcchhhHHHHHHH-ccchhHHHHHHHHHHHHHHHhhh----------------------hHHHHHH
Confidence 999999999999999988999999999 59999999999999999999876 4678888
Q ss_pred HHHhhCCC-----------cCHHHHHHHHHHHHHhc
Q 002337 906 VLRELSPS-----------LSMAELKKYELLRDQFE 930 (934)
Q Consensus 906 al~~~~ps-----------vs~~~l~~y~~~~~~~~ 930 (934)
|+..++|| ++++++.-||+++.+++
T Consensus 412 A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq 447 (693)
T KOG0730|consen 412 ALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQ 447 (693)
T ss_pred HHhcCCchhhhheeccCCCCChhhccCHHHHHHHHH
Confidence 88888776 68999999999888876
No 29
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=2.7e-35 Score=364.67 Aligned_cols=218 Identities=19% Similarity=0.331 Sum_probs=180.8
Q ss_pred hcCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccc----------cc---------------------
Q 002337 678 SSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMY----------IG--------------------- 726 (934)
Q Consensus 678 ~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~----------~G--------------------- 726 (934)
..|+.+++||||+||||||||++|||+|++++++|+.|++++++.+| +|
T Consensus 1624 rLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e 1703 (2281)
T CHL00206 1624 RLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLT 1703 (2281)
T ss_pred HcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhh
Confidence 46899999999999999999999999999999999999999998765 22
Q ss_pred ----------hhhhh--hHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcC--CCCCEEE
Q 002337 727 ----------ESEKN--VRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND--SSQDLFI 792 (934)
Q Consensus 727 ----------ese~~--v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~--~~~~v~v 792 (934)
+++.+ ++.+|+.|++++||||||||||+++.+. +. ...+++||++|||... ...+|+|
T Consensus 1704 ~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-----s~---~ltL~qLLneLDg~~~~~s~~~VIV 1775 (2281)
T CHL00206 1704 MMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-----SN---YLSLGLLVNSLSRDCERCSTRNILV 1775 (2281)
T ss_pred hcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-----cc---eehHHHHHHHhccccccCCCCCEEE
Confidence 23333 8999999999999999999999998652 11 1248999999998742 3568999
Q ss_pred EEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHH--HhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHHH
Q 002337 793 IGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKAL--TRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADA 869 (934)
Q Consensus 793 I~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~--~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~A 869 (934)
|||||+|+.|||||+||||||+.|+|+. |+..+|++++..+ ++++++..+ +|+..+|+. |.||+||||++||++|
T Consensus 1776 IAATNRPD~LDPALLRPGRFDR~I~Ir~-Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~-T~GfSGADLanLvNEA 1853 (2281)
T CHL00206 1776 IASTHIPQKVDPALIAPNKLNTCIKIRR-LLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSI-TMGSNARDLVALTNEA 1853 (2281)
T ss_pred EEeCCCcccCCHhHcCCCCCCeEEEeCC-CCchhHHHHHHHHHhhcCCCCCcccccHHHHHHh-CCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999998 6778888888765 455666544 689999999 6999999999999999
Q ss_pred HHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhhCC-------CcCHHHHHHH
Q 002337 870 WFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSP-------SLSMAELKKY 922 (934)
Q Consensus 870 ~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~p-------svs~~~l~~y 922 (934)
++.|+++. ...|+.++|+.|+..+.. +....++..|
T Consensus 1854 aliAirq~-----------------ks~Id~~~I~~Al~Rq~~g~~~~~~~~~~~~ia~y 1896 (2281)
T CHL00206 1854 LSISITQK-----------------KSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFY 1896 (2281)
T ss_pred HHHHHHcC-----------------CCccCHHHHHHHHHHHHhhhhhcccCcchhhhhhh
Confidence 99999874 135889999999976522 3445555555
No 30
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=336.34 Aligned_cols=223 Identities=38% Similarity=0.660 Sum_probs=202.1
Q ss_pred CccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEE
Q 002337 669 LPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVI 747 (934)
Q Consensus 669 ~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vl 747 (934)
+|+.++++|. .++.++.++|||||||||||++|+++|++++.+|+.+.++++.++|.|+++..++.+|..|+...||||
T Consensus 201 lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~IL 280 (438)
T PTZ00361 201 LPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIV 280 (438)
T ss_pred hhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEE
Confidence 6889999998 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccCCCCCCCC-chhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHH
Q 002337 748 FFDELDSLAPARGASGDS-GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSY 826 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~-~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~ 826 (934)
||||+|.++.+|...... .....+.+.++|.+||++.. ..++.||+|||+++.||++++||||||+.|+|+. |+.++
T Consensus 281 fIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~-~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~-Pd~~~ 358 (438)
T PTZ00361 281 FIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS-RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPN-PDEKT 358 (438)
T ss_pred eHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc-cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCC-CCHHH
Confidence 999999999888643222 12345778899999999864 4579999999999999999999999999999996 89999
Q ss_pred HHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHH
Q 002337 827 RERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKV 906 (934)
Q Consensus 827 r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~a 906 (934)
|.+||+.+++++.+..++++..++.. ++||+||||.++|++|++.|+++. ...|+++||++|
T Consensus 359 R~~Il~~~~~k~~l~~dvdl~~la~~-t~g~sgAdI~~i~~eA~~~Alr~~-----------------r~~Vt~~D~~~A 420 (438)
T PTZ00361 359 KRRIFEIHTSKMTLAEDVDLEEFIMA-KDELSGADIKAICTEAGLLALRER-----------------RMKVTQADFRKA 420 (438)
T ss_pred HHHHHHHHHhcCCCCcCcCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhc-----------------CCccCHHHHHHH
Confidence 99999999999999999999999999 599999999999999999999763 235999999999
Q ss_pred HHhhC
Q 002337 907 LRELS 911 (934)
Q Consensus 907 l~~~~ 911 (934)
+.++.
T Consensus 421 ~~~v~ 425 (438)
T PTZ00361 421 KEKVL 425 (438)
T ss_pred HHHHH
Confidence 99874
No 31
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.3e-33 Score=330.87 Aligned_cols=222 Identities=40% Similarity=0.746 Sum_probs=197.6
Q ss_pred cchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEe
Q 002337 671 LLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFF 749 (934)
Q Consensus 671 l~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfi 749 (934)
+.+++.|. .+..++.++|||||||||||++|+++|++++.+|+.++++++.+.|.|++++.++++|+.|+..+||||||
T Consensus 74 l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~i 153 (495)
T TIGR01241 74 LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFI 153 (495)
T ss_pred HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEE
Confidence 45566666 47888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCC-CCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHH
Q 002337 750 DELDSLAPARGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRE 828 (934)
Q Consensus 750 DEid~l~~~r~~~-~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~ 828 (934)
||+|.++++|+.. +.......+++++||.+||++.. ..+|+||||||+|+.||||++||||||+.|++++ |+.++|.
T Consensus 154 DEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~-~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~-Pd~~~R~ 231 (495)
T TIGR01241 154 DEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT-NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDL-PDIKGRE 231 (495)
T ss_pred echhhhhhccccCcCCccHHHHHHHHHHHhhhccccC-CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCC-CCHHHHH
Confidence 9999999888642 12223456899999999999865 4679999999999999999999999999999997 8899999
Q ss_pred HHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHH
Q 002337 829 RVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLR 908 (934)
Q Consensus 829 ~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~ 908 (934)
+||+.++++.++..++++..+|.. |.||+|+||.++|++|+..|+++. ...|+.+||++|+.
T Consensus 232 ~il~~~l~~~~~~~~~~l~~la~~-t~G~sgadl~~l~~eA~~~a~~~~-----------------~~~i~~~~l~~a~~ 293 (495)
T TIGR01241 232 EILKVHAKNKKLAPDVDLKAVARR-TPGFSGADLANLLNEAALLAARKN-----------------KTEITMNDIEEAID 293 (495)
T ss_pred HHHHHHHhcCCCCcchhHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHcC-----------------CCCCCHHHHHHHHH
Confidence 999999999888888999999999 699999999999999998887642 13589999999999
Q ss_pred hhCC
Q 002337 909 ELSP 912 (934)
Q Consensus 909 ~~~p 912 (934)
.+..
T Consensus 294 ~~~~ 297 (495)
T TIGR01241 294 RVIA 297 (495)
T ss_pred HHhc
Confidence 8743
No 32
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-34 Score=302.47 Aligned_cols=224 Identities=38% Similarity=0.676 Sum_probs=202.0
Q ss_pred CCccchhHHhhc-CCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcE
Q 002337 668 KLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746 (934)
Q Consensus 668 k~pl~~~~~~~~-~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~v 746 (934)
.+|+..|++|.. ++.+|.+++||||||||||++|+++|...++||+.+..++|.++|+||+.+.+|+.|..|+...|||
T Consensus 149 elpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pci 228 (388)
T KOG0651|consen 149 ELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCI 228 (388)
T ss_pred EeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceE
Confidence 478999999986 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccCCCCCCCCc-hhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHH
Q 002337 747 IFFDELDSLAPARGASGDSG-GVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVS 825 (934)
Q Consensus 747 lfiDEid~l~~~r~~~~~~~-~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~ 825 (934)
||+||||+++++|.+.+.+. ....+.+-.|+++|||... ..+|-+|.|||+|+.|||||+||||+|+.+.+|+ |+..
T Consensus 229 ifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~-l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPl-pne~ 306 (388)
T KOG0651|consen 229 IFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT-LHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPL-PNEQ 306 (388)
T ss_pred EeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh-cccccEEEecCCccccchhhcCCccccceeccCC-cchh
Confidence 99999999999986544332 2345677788899999864 5789999999999999999999999999999999 8899
Q ss_pred HHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHH
Q 002337 826 YRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVK 905 (934)
Q Consensus 826 ~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~ 905 (934)
.|..|++.+...+.....+|.+.+.+. .+||+|+|+++.|++|.+.|+++. ...+-+|||..
T Consensus 307 ~r~~I~Kih~~~i~~~Geid~eaivK~-~d~f~gad~rn~~tEag~Fa~~~~-----------------~~~vl~Ed~~k 368 (388)
T KOG0651|consen 307 ARLGILKIHVQPIDFHGEIDDEAILKL-VDGFNGADLRNVCTEAGMFAIPEE-----------------RDEVLHEDFMK 368 (388)
T ss_pred hceeeEeeccccccccccccHHHHHHH-HhccChHHHhhhcccccccccchh-----------------hHHHhHHHHHH
Confidence 999999999999998999999999998 699999999999999999998653 22467899999
Q ss_pred HHHhhC
Q 002337 906 VLRELS 911 (934)
Q Consensus 906 al~~~~ 911 (934)
+.+++.
T Consensus 369 ~vrk~~ 374 (388)
T KOG0651|consen 369 LVRKQA 374 (388)
T ss_pred HHHHHH
Confidence 988764
No 33
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=6.9e-33 Score=320.48 Aligned_cols=226 Identities=38% Similarity=0.673 Sum_probs=185.7
Q ss_pred CCccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCc----------EEEecCccccccccchhhhhhHHHH
Q 002337 668 KLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN----------FLSVKGPELINMYIGESEKNVRDIF 736 (934)
Q Consensus 668 k~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~----------~i~v~~~~l~~~~~Gese~~v~~lf 736 (934)
.+|+.++++|. .++.+++++|||||||||||++|+++|++++.+ |+.+++++++++|+|++++.++.+|
T Consensus 199 ~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF 278 (512)
T TIGR03689 199 ELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIF 278 (512)
T ss_pred HHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHH
Confidence 36888999998 599999999999999999999999999997543 7788999999999999999999999
Q ss_pred HHHHhC----CCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCc
Q 002337 737 QKARSA----RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRF 812 (934)
Q Consensus 737 ~~A~~~----~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRf 812 (934)
+.|+.. .||||||||+|+++++|+.. .++....+++++||++|||+.. ..+|+||||||+++.||||++|||||
T Consensus 279 ~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~-~s~d~e~~il~~LL~~LDgl~~-~~~ViVI~ATN~~d~LDpALlRpGRf 356 (512)
T TIGR03689 279 QRAREKASDGRPVIVFFDEMDSIFRTRGSG-VSSDVETTVVPQLLSELDGVES-LDNVIVIGASNREDMIDPAILRPGRL 356 (512)
T ss_pred HHHHHHhhcCCCceEEEehhhhhhcccCCC-ccchHHHHHHHHHHHHhccccc-CCceEEEeccCChhhCCHhhcCcccc
Confidence 999864 69999999999999988643 2334457889999999999965 36799999999999999999999999
Q ss_pred ceeeeecCCCCHHHHHHHHHHHHhc-CCCCc---------CCCHHHHHhh----------------------------CC
Q 002337 813 DKLLYVGVNSDVSYRERVLKALTRK-FKLLE---------DVSLYSIAKK----------------------------CP 854 (934)
Q Consensus 813 d~~i~v~~Pp~~~~r~~Il~~~~~~-~~~~~---------~~~l~~la~~----------------------------~t 854 (934)
|..|+|+. |+.++|.+||+.++.. .++.. ..++..++.. .+
T Consensus 357 D~~I~~~~-Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~ 435 (512)
T TIGR03689 357 DVKIRIER-PDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFK 435 (512)
T ss_pred ceEEEeCC-CCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeec
Confidence 99999996 8999999999988764 34311 1122222211 14
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHh
Q 002337 855 PNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRE 909 (934)
Q Consensus 855 ~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~ 909 (934)
+.+|||+|.++|.+|...|+++.+... ...|+.+|+.+|+..
T Consensus 436 d~~sGa~i~~iv~~a~~~ai~~~~~~~-------------~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 436 DFVSGAMIANIVDRAKKRAIKDHITGG-------------QVGLRIEHLLAAVLD 477 (512)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhcC-------------CcCcCHHHHHHHHHH
Confidence 667888888888888888888876321 236899999999975
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-33 Score=335.63 Aligned_cols=242 Identities=39% Similarity=0.692 Sum_probs=204.5
Q ss_pred CccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHc-----CCcEEEecCccccccccchhhhhhHHHHHHHHhC
Q 002337 669 LPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESEKNVRDIFQKARSA 742 (934)
Q Consensus 669 ~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~ 742 (934)
.|+.+|+.|. +++.||+|+||+||||||||++|+++|..+ +..|+.-++++.+++|+|+.|++++.+|+.|+..
T Consensus 283 ~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~ 362 (1080)
T KOG0732|consen 283 LPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKT 362 (1080)
T ss_pred hHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhcc
Confidence 7999999998 699999999999999999999999999887 4568888999999999999999999999999999
Q ss_pred CCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCC
Q 002337 743 RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNS 822 (934)
Q Consensus 743 ~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp 822 (934)
.|+||||||||-|+|.|+...+ .....+++.||..|||+.. ...|+||||||||+.+||||+||||||+.+||++ |
T Consensus 363 qPSIIffdeIdGlapvrSskqE--qih~SIvSTLLaLmdGlds-RgqVvvigATnRpda~dpaLRRPgrfdref~f~l-p 438 (1080)
T KOG0732|consen 363 QPSIIFFDEIDGLAPVRSSKQE--QIHASIVSTLLALMDGLDS-RGQVVVIGATNRPDAIDPALRRPGRFDREFYFPL-P 438 (1080)
T ss_pred CceEEeccccccccccccchHH--HhhhhHHHHHHHhccCCCC-CCceEEEcccCCccccchhhcCCcccceeEeeeC-C
Confidence 9999999999999999965332 2345799999999999975 5789999999999999999999999999999999 7
Q ss_pred CHHHHHHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHH
Q 002337 823 DVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYD 901 (934)
Q Consensus 823 ~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~ 901 (934)
+.+.|..|+.+++++..-... .-+..+|+. |.||-||||++||.+|++.|+++..-.......... -......|+.+
T Consensus 439 ~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~-t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~-~d~~~ikV~~~ 516 (1080)
T KOG0732|consen 439 DVDARAKILDIHTRKWEPPISRELLLWLAEE-TSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLL-IDVALIKVEVR 516 (1080)
T ss_pred chHHHHHHHHHhccCCCCCCCHHHHHHHHHh-ccccchHHHHHHHHHHhhhhhccccCeeeccccccc-ccchhhhhhhH
Confidence 899999999999999863222 236788888 699999999999999999999886433211100001 11223458999
Q ss_pred HHHHHHHhhCCCcCH
Q 002337 902 DFVKVLRELSPSLSM 916 (934)
Q Consensus 902 df~~al~~~~psvs~ 916 (934)
||..|+.+.-|+...
T Consensus 517 ~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 517 DFVEAMSRITPSSRR 531 (1080)
T ss_pred hhhhhhhccCCCCCc
Confidence 999999998887543
No 35
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=1.3e-32 Score=299.44 Aligned_cols=188 Identities=19% Similarity=0.250 Sum_probs=158.4
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHh-----CCCcEEEecccc
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARS-----ARPCVIFFDELD 753 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~-----~~p~vlfiDEid 753 (934)
.++++|.+++||||||||||++|+++|++++++|+.+++++|.++|+||+|+++|++|..|+. .+||||||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 478899999999999999999999999999999999999999999999999999999999985 479999999999
Q ss_pred ccccCCCCCCCCchhHHHHH-HhhhhhccCC-----------cCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCC
Q 002337 754 SLAPARGASGDSGGVMDRVV-SQMLAEIDGL-----------NDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVN 821 (934)
Q Consensus 754 ~l~~~r~~~~~~~~~~~~v~-~~lL~~ldg~-----------~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~P 821 (934)
+++++|++ .+..+.++++ .+||++||+. .....+|+||+|||+|+.|||||+||||||+.+ .+
T Consensus 223 A~~g~r~~--~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~l- 297 (413)
T PLN00020 223 AGAGRFGT--TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WA- 297 (413)
T ss_pred hcCCCCCC--CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CC-
Confidence 99999873 3344555665 8999999873 133567999999999999999999999999965 45
Q ss_pred CCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCC----CCHHHHHHHHHHHHHHH
Q 002337 822 SDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPN----FTGADMYALCADAWFHA 873 (934)
Q Consensus 822 p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g----~sgaDl~~l~~~A~~~A 873 (934)
|+.++|.+||+.++++..+. .+|+..|+..+ .| |.||--..+..++....
T Consensus 298 Pd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f-~gq~~Df~GAlrar~yd~~v~~~ 351 (413)
T PLN00020 298 PTREDRIGVVHGIFRDDGVS-REDVVKLVDTF-PGQPLDFFGALRARVYDDEVRKW 351 (413)
T ss_pred CCHHHHHHHHHHHhccCCCC-HHHHHHHHHcC-CCCCchhhhHHHHHHHHHHHHHH
Confidence 88999999999999998775 57888888884 44 66664444444443333
No 36
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=3.7e-32 Score=324.27 Aligned_cols=220 Identities=40% Similarity=0.719 Sum_probs=195.7
Q ss_pred cchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEe
Q 002337 671 LLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFF 749 (934)
Q Consensus 671 l~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfi 749 (934)
++.++.|. .+...+.++||+||||||||++|+++|++.+.+|++++++++..+|.|.....++++|+.|+...||||||
T Consensus 202 lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfI 281 (638)
T CHL00176 202 LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFI 281 (638)
T ss_pred HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEE
Confidence 34455555 47788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCC-CCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHH
Q 002337 750 DELDSLAPARGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRE 828 (934)
Q Consensus 750 DEid~l~~~r~~~-~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~ 828 (934)
||+|.++.+|+.. +........++++||.+||++.. ..+|+||+|||+|+.+|+|++||||||+.|++++ |+.++|.
T Consensus 282 DEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~-~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~l-Pd~~~R~ 359 (638)
T CHL00176 282 DEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG-NKGVIVIAATNRVDILDAALLRPGRFDRQITVSL-PDREGRL 359 (638)
T ss_pred ecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC-CCCeeEEEecCchHhhhhhhhccccCceEEEECC-CCHHHHH
Confidence 9999999888643 22233456789999999999864 4689999999999999999999999999999997 8899999
Q ss_pred HHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHH
Q 002337 829 RVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLR 908 (934)
Q Consensus 829 ~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~ 908 (934)
+||+.++++..+..++++..+|.. |.||+|+||.++|++|++.|+++. ...|+.+||++|+.
T Consensus 360 ~IL~~~l~~~~~~~d~~l~~lA~~-t~G~sgaDL~~lvneAal~a~r~~-----------------~~~It~~dl~~Ai~ 421 (638)
T CHL00176 360 DILKVHARNKKLSPDVSLELIARR-TPGFSGADLANLLNEAAILTARRK-----------------KATITMKEIDTAID 421 (638)
T ss_pred HHHHHHHhhcccchhHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHhC-----------------CCCcCHHHHHHHHH
Confidence 999999999888889999999999 599999999999999999887653 13589999999998
Q ss_pred hh
Q 002337 909 EL 910 (934)
Q Consensus 909 ~~ 910 (934)
.+
T Consensus 422 rv 423 (638)
T CHL00176 422 RV 423 (638)
T ss_pred HH
Confidence 87
No 37
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=5.9e-32 Score=307.35 Aligned_cols=222 Identities=48% Similarity=0.795 Sum_probs=199.1
Q ss_pred CccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEE
Q 002337 669 LPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVI 747 (934)
Q Consensus 669 ~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vl 747 (934)
+|+.+++.|. .|+.++.++|||||||||||++|+++|++++.+|+.+.++++...|.|+.+..++.+|+.|+...|+||
T Consensus 140 ~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il 219 (364)
T TIGR01242 140 LPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSII 219 (364)
T ss_pred HHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEE
Confidence 5778888887 489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccCCCCCCCC-chhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHH
Q 002337 748 FFDELDSLAPARGASGDS-GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSY 826 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~-~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~ 826 (934)
||||+|.+..+|.....+ .....+.+.+++.+++++.. ..+++||+|||+++.+|++++||||||+.|+|++ |+.++
T Consensus 220 ~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~-~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~-P~~~~ 297 (364)
T TIGR01242 220 FIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP-RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPL-PDFEG 297 (364)
T ss_pred EhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC-CCCEEEEEecCChhhCChhhcCcccCceEEEeCC-cCHHH
Confidence 999999999877643222 22345778899999998754 3579999999999999999999999999999997 89999
Q ss_pred HHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHH
Q 002337 827 RERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKV 906 (934)
Q Consensus 827 r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~a 906 (934)
|.+||+.++++..+..++++..+++. |+||+|+||.++|++|++.|+++. ...|+.+||.+|
T Consensus 298 r~~Il~~~~~~~~l~~~~~~~~la~~-t~g~sg~dl~~l~~~A~~~a~~~~-----------------~~~i~~~d~~~a 359 (364)
T TIGR01242 298 RLEILKIHTRKMKLAEDVDLEAIAKM-TEGASGADLKAICTEAGMFAIREE-----------------RDYVTMDDFIKA 359 (364)
T ss_pred HHHHHHHHHhcCCCCccCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhC-----------------CCccCHHHHHHH
Confidence 99999999999998888999999999 599999999999999999998762 135999999999
Q ss_pred HHhh
Q 002337 907 LREL 910 (934)
Q Consensus 907 l~~~ 910 (934)
+.++
T Consensus 360 ~~~~ 363 (364)
T TIGR01242 360 VEKV 363 (364)
T ss_pred HHHh
Confidence 9875
No 38
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.98 E-value=1e-31 Score=324.08 Aligned_cols=214 Identities=42% Similarity=0.758 Sum_probs=193.2
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCC
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR 759 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r 759 (934)
+...+.|++|+||||||||++++++|++++.+|+.++++++...|.|..+..++++|+.|+..+||||||||+|.++.+|
T Consensus 181 ~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r 260 (644)
T PRK10733 181 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 260 (644)
T ss_pred CCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhcc
Confidence 55667899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC-CCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcC
Q 002337 760 GAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF 838 (934)
Q Consensus 760 ~~~-~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~ 838 (934)
+.. +.......+++++||.+|||+.. ..+|+||||||+|+.||||++||||||+.|+|++ |+.++|.+||+.++++.
T Consensus 261 ~~~~~g~~~~~~~~ln~lL~~mdg~~~-~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~-Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 261 GAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL-PDVRGREQILKVHMRRV 338 (644)
T ss_pred CCCCCCCchHHHHHHHHHHHhhhcccC-CCCeeEEEecCChhhcCHHHhCCcccceEEEcCC-CCHHHHHHHHHHHhhcC
Confidence 643 22223456799999999999865 4689999999999999999999999999999997 88999999999999999
Q ss_pred CCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhhCCC
Q 002337 839 KLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPS 913 (934)
Q Consensus 839 ~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 913 (934)
++..++++..+|+. |.|||||||.++|++|+..|+++. ...|+++||++|+..+.++
T Consensus 339 ~l~~~~d~~~la~~-t~G~sgadl~~l~~eAa~~a~r~~-----------------~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 339 PLAPDIDAAIIARG-TPGFSGADLANLVNEAALFAARGN-----------------KRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred CCCCcCCHHHHHhh-CCCCCHHHHHHHHHHHHHHHHHcC-----------------CCcccHHHHHHHHHHHhcc
Confidence 99999999999999 699999999999999999998652 2368999999999887554
No 39
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6e-32 Score=290.24 Aligned_cols=259 Identities=17% Similarity=0.280 Sum_probs=201.6
Q ss_pred CCCcCCchHHHHHHHH-HhhccCCCcccc--CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILAS-ILAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~-il~p~l~p~~~~--~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.++.++++ ..+.|.+ ++.|+..|+.|. .+|-++||++||||||||+|||++|.|.|..|+.|+.+.+.++|.|+++
T Consensus 212 ~DIagl~~-AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSE 290 (491)
T KOG0738|consen 212 DDIAGLHE-AKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESE 290 (491)
T ss_pred HhhcchHH-HHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchH
Confidence 44556653 4555554 468999998884 4666999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
+.+|-+|+.|+.++|++|||||||.|+..|+..+.+...+...+|++..++.+-.. .....
T Consensus 291 KlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t-------------------~e~~k 351 (491)
T KOG0738|consen 291 KLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGT-------------------LENSK 351 (491)
T ss_pred HHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccc-------------------cccce
Confidence 99999999999999999999999999997766554444444444544433332110 01145
Q ss_pred cEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVA 602 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~ 602 (934)
.|+|+|+||-||+||+++||||...|.+|.|+.+.|..+++..++.... .. ...++.++..++||+|+||..+|+
T Consensus 352 ~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~-~~----~~~~~~lae~~eGySGaDI~nvCr 426 (491)
T KOG0738|consen 352 VVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVEL-DD----PVNLEDLAERSEGYSGADITNVCR 426 (491)
T ss_pred eEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccC-CC----CccHHHHHHHhcCCChHHHHHHHH
Confidence 6999999999999999999999999999999999999999999976543 22 334788999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhccc
Q 002337 603 DAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRN 660 (934)
Q Consensus 603 ~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~~~ 660 (934)
+|.+.+++|......... +.. . .. ......+..+||..|+.++++..
T Consensus 427 eAsm~~mRR~i~g~~~~e-----i~~-l---ak--E~~~~pv~~~Dfe~Al~~v~pSv 473 (491)
T KOG0738|consen 427 EASMMAMRRKIAGLTPRE-----IRQ-L---AK--EEPKMPVTNEDFEEALRKVRPSV 473 (491)
T ss_pred HHHHHHHHHHHhcCCcHH-----hhh-h---hh--hccccccchhhHHHHHHHcCcCC
Confidence 999999997543322110 000 0 00 01125688999999999887654
No 40
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-31 Score=273.78 Aligned_cols=241 Identities=18% Similarity=0.272 Sum_probs=207.4
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
+++++++.++.+..+.++.|+.|++.| ++.+++|+|+|||||||||.++|+.|...++.|..+.++.++..+.|+..
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGA 250 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGA 250 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchH
Confidence 678889888888899999999999876 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|..|+..+|+||||||+|++..++.+... ....++...+.+++.|+ ++..+..
T Consensus 251 kLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek-----~GDREVQRTMLELLNQL----------------DGFss~~ 309 (424)
T KOG0652|consen 251 KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEK-----AGDREVQRTMLELLNQL----------------DGFSSDD 309 (424)
T ss_pred HHHHHHHHHhhccCCeEEEEechhhhccccccccc-----cccHHHHHHHHHHHHhh----------------cCCCCcc
Confidence 99999999999999999999999999987754322 22457777777776653 2334477
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
.|-|||+||+.+-+||++.| |.++.|+||.|+++.|..|++++.+++.. ..|+. ++++|+.|++|.|+...++
T Consensus 310 ~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv-~~DvN----feELaRsTddFNGAQcKAV 384 (424)
T KOG0652|consen 310 RVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV-SDDVN----FEELARSTDDFNGAQCKAV 384 (424)
T ss_pred ceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCC-CCCCC----HHHHhhcccccCchhheee
Confidence 89999999999999999988 89999999999999999999999988754 44444 6899999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhccc
Q 002337 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRN 660 (934)
Q Consensus 601 ~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~~~ 660 (934)
|-+|++.++++. ...++.+||..++..++...
T Consensus 385 cVEAGMiALRr~----------------------------atev~heDfmegI~eVqakK 416 (424)
T KOG0652|consen 385 CVEAGMIALRRG----------------------------ATEVTHEDFMEGILEVQAKK 416 (424)
T ss_pred ehhhhHHHHhcc----------------------------cccccHHHHHHHHHHHHHhh
Confidence 999999999873 22356788888887776543
No 41
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=3.1e-30 Score=317.53 Aligned_cols=241 Identities=44% Similarity=0.748 Sum_probs=209.6
Q ss_pred CccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEE
Q 002337 669 LPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVI 747 (934)
Q Consensus 669 ~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vl 747 (934)
+|+.++++|. .++.++.++|||||||||||++|+++|++++.+|+.++++++.++|.|++++.++.+|+.|....|+||
T Consensus 196 ~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il 275 (733)
T TIGR01243 196 LPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSII 275 (733)
T ss_pred HHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEE
Confidence 5677888887 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHH
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYR 827 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r 827 (934)
||||+|.++++|+.. .++...+++++|++.||++.. ...++||||||+|+.||++++|+||||+.+++++ |+.++|
T Consensus 276 ~iDEid~l~~~r~~~--~~~~~~~~~~~Ll~~ld~l~~-~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~-P~~~~R 351 (733)
T TIGR01243 276 FIDEIDAIAPKREEV--TGEVEKRVVAQLLTLMDGLKG-RGRVIVIGATNRPDALDPALRRPGRFDREIVIRV-PDKRAR 351 (733)
T ss_pred EeehhhhhcccccCC--cchHHHHHHHHHHHHhhcccc-CCCEEEEeecCChhhcCHHHhCchhccEEEEeCC-cCHHHH
Confidence 999999999887642 234557899999999999865 4679999999999999999999999999999997 789999
Q ss_pred HHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCc--cccccCcccccHHHHHH
Q 002337 828 ERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSS--RIDQADSVVVEYDDFVK 905 (934)
Q Consensus 828 ~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~--~~~~~~~~~it~~df~~ 905 (934)
.+||+.+.+.+++..++++..+++. |+||+|+|+.++|++|++.|++|.+.......... ..+......++.+||.+
T Consensus 352 ~~Il~~~~~~~~l~~d~~l~~la~~-t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~ 430 (733)
T TIGR01243 352 KEILKVHTRNMPLAEDVDLDKLAEV-THGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFME 430 (733)
T ss_pred HHHHHHHhcCCCCccccCHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHH
Confidence 9999999999999889999999999 69999999999999999999998765322110000 01112334689999999
Q ss_pred HHHhhCCCc
Q 002337 906 VLRELSPSL 914 (934)
Q Consensus 906 al~~~~psv 914 (934)
|++.++|+.
T Consensus 431 Al~~v~ps~ 439 (733)
T TIGR01243 431 ALKMVEPSA 439 (733)
T ss_pred HHhhccccc
Confidence 999999874
No 42
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=8.1e-30 Score=260.87 Aligned_cols=304 Identities=18% Similarity=0.265 Sum_probs=222.5
Q ss_pred HHHHHHHHHhhccCCCeeecCCEEEEecccCCCCccccccccccCCCCCceEEEEEEEEecCCCeEEEEeCCeeEEEEcC
Q 002337 271 QEKIDLALHNYFEVDRYLARGDVFSVCINWNCSSMICIPCRQRLHRRSDNIIYFKVVAVEPSEETVLRVNCTKTALVLGG 350 (934)
Q Consensus 271 q~~~~~~l~~~f~~~r~~~~gd~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~vd~~~T~lv~~~ 350 (934)
-++|+.|-+.-+... .|++||.+-=.. -....-|||..+.|++..+. ++.|.+++..
T Consensus 50 ~~~F~~YArdQW~Ge-~v~eg~ylFD~~-------------------~~pdyAfkvI~~~P~~~~i~---~st~i~vl~~ 106 (368)
T COG1223 50 PEVFNIYARDQWLGE-VVREGDYLFDTR-------------------MFPDYAFKVIRVVPSGGGII---TSTTIFVLET 106 (368)
T ss_pred HHHHHHHHHHhhcce-eeecCceEeecc-------------------cccccceeEEEEeCCCCcee---cceEEEEecC
Confidence 457877777665533 689999862111 12346799999999765433 4455555543
Q ss_pred CC--CCCCCCCcccccCCCCcCCchHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 351 SI--PSALPPDLLISGSNDFVPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 351 ~~--~s~~p~~~~~~~~~~~~~~~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
.- .+.+-++..+ .+.+|.. +..+...-++..+-+|..|+-=.+++||+|||||||||++||++|++...+++.+
T Consensus 107 ~~~~~~e~~~~it~---ddViGqE-eAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~v 182 (368)
T COG1223 107 PREEDREIISDITL---DDVIGQE-EAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLV 182 (368)
T ss_pred cchhhhhhhccccH---hhhhchH-HHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEe
Confidence 11 1111112221 3333332 3334444445666778888767789999999999999999999999999999999
Q ss_pred ecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccC
Q 002337 429 SCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESH 508 (934)
Q Consensus 429 ~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~ 508 (934)
...+|++.+.|+....++++++.|+..+|||+||||+|+|+-.+. -......|....+.++
T Consensus 183 kat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRr-------yQelRGDVsEiVNALL------------ 243 (368)
T COG1223 183 KATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRR-------YQELRGDVSEIVNALL------------ 243 (368)
T ss_pred chHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhh-------HHHhcccHHHHHHHHH------------
Confidence 999999999999999999999999999999999999999986331 0112223333344443
Q ss_pred CCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhh
Q 002337 509 GYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQ 588 (934)
Q Consensus 509 g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~ 588 (934)
..+++...+..|+.||+||+++-||+++|+||..+|+|..|+.++|.+|++.+++.++. . + +..++.++..
T Consensus 244 ----TelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Pl-p--v--~~~~~~~~~~ 314 (368)
T COG1223 244 ----TELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPL-P--V--DADLRYLAAK 314 (368)
T ss_pred ----HhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCC-c--c--ccCHHHHHHH
Confidence 22344556889999999999999999999999999999999999999999999987764 2 2 3347899999
Q ss_pred cCCCChHHHHH-HHHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhh
Q 002337 589 TSGFMPRDLHA-LVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSK 657 (934)
Q Consensus 589 t~Gfv~~DL~~-L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k 657 (934)
|.||+++||.. +++.|.++|+..- ...+..+|+..++++.+
T Consensus 315 t~g~SgRdikekvlK~aLh~Ai~ed----------------------------~e~v~~edie~al~k~r 356 (368)
T COG1223 315 TKGMSGRDIKEKVLKTALHRAIAED----------------------------REKVEREDIEKALKKER 356 (368)
T ss_pred hCCCCchhHHHHHHHHHHHHHHHhc----------------------------hhhhhHHHHHHHHHhhc
Confidence 99999999976 4566666666531 23467789999998643
No 43
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-30 Score=296.05 Aligned_cols=258 Identities=21% Similarity=0.350 Sum_probs=204.0
Q ss_pred CCCCcCCchHHHHHHHHHhhccCCCcccc--CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 365 SNDFVPLQGDTVKILASILAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 365 ~~~~~~~~~~~~~~L~~il~p~l~p~~~~--~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
+.+++|+++-....+..+-.|+.||+.|+ .+.+.|||||||||||||.+|||+|-++.+.|+.|.+++|...|.|++|
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE 750 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSE 750 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchH
Confidence 46677777655667777789999999996 4556899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHH-HHHHhcCCCccccccccCCCCchhhhhhhhc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVAS-VIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~-~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~ 521 (934)
+++|.+|+.|+..+|||||+||+|.++|.|.+.| |..+...++.+ +|.++-. + .....
T Consensus 751 ~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sG---DSGGVMDRVVSQLLAELDg-l-----------------s~~~s 809 (953)
T KOG0736|consen 751 ENVREVFERARSAAPCVIFFDELDSLAPNRGRSG---DSGGVMDRVVSQLLAELDG-L-----------------SDSSS 809 (953)
T ss_pred HHHHHHHHHhhccCCeEEEeccccccCccCCCCC---CccccHHHHHHHHHHHhhc-c-----------------cCCCC
Confidence 9999999999999999999999999999665444 54555555443 2222211 0 01136
Q ss_pred ccEEEEEecCCCCCCChhhhc--ccceEEEcCCCC-HHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC-CChHHH
Q 002337 522 QQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLT-EQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG-FMPRDL 597 (934)
Q Consensus 522 ~~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pd-e~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G-fv~~DL 597 (934)
..|+||||||+|+-|||+|.| ||+.-+++|+++ .+.+..+|+.+++++. +..|+ ++.++|+.++- |+|+|+
T Consensus 810 ~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFk-LdedV----dL~eiAk~cp~~~TGADl 884 (953)
T KOG0736|consen 810 QDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFK-LDEDV----DLVEIAKKCPPNMTGADL 884 (953)
T ss_pred CceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHcc-CCCCc----CHHHHHhhCCcCCchhHH
Confidence 789999999999999999999 899999998864 5688999999998764 33344 47899999885 999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhcc
Q 002337 598 HALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKR 659 (934)
Q Consensus 598 ~~L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~~ 659 (934)
.+||.+|.+.|++|....++...... .........++++||.+++++....
T Consensus 885 YsLCSdA~l~AikR~i~~ie~g~~~~-----------~e~~~~~v~V~~eDflks~~~l~PS 935 (953)
T KOG0736|consen 885 YSLCSDAMLAAIKRTIHDIESGTISE-----------EEQESSSVRVTMEDFLKSAKRLQPS 935 (953)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccc-----------cccCCceEEEEHHHHHHHHHhcCCc
Confidence 99999999999988654443321100 0011235678999999999887554
No 44
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-30 Score=264.98 Aligned_cols=260 Identities=17% Similarity=0.243 Sum_probs=219.3
Q ss_pred EEeCCeeEEEEcCCCCCCCCCCcccccCCCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHH
Q 002337 338 RVNCTKTALVLGGSIPSALPPDLLISGSNDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVV 414 (934)
Q Consensus 338 ~vd~~~T~lv~~~~~~s~~p~~~~~~~~~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLa 414 (934)
.||++.|.|.+.. -|+..| .+.++..+++-+..+-+..|++||+.| ++.+++|||||||||||||..+
T Consensus 158 kidpsvtmm~vee------kpdvty---~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 158 KIDPSVTMMQVEE------KPDVTY---SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCCCceeEEEeec------CCCccc---ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHH
Confidence 5788889887765 456666 456666666666666678999999877 6899999999999999999999
Q ss_pred HHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHH
Q 002337 415 RYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIRE 494 (934)
Q Consensus 415 ralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ 494 (934)
|++|++.++.|+.+-+++|+.+|.|+....++.+|+.|+....||+|+||||++...+-++|. +...++...+.+
T Consensus 229 ravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~-----ggdnevqrtmle 303 (435)
T KOG0729|consen 229 RAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGA-----GGDNEVQRTMLE 303 (435)
T ss_pred HHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCC-----CCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987765543 345678877777
Q ss_pred hcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccc
Q 002337 495 FTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSEL 572 (934)
Q Consensus 495 ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l 572 (934)
++.|+ ++...++++-|+.+||+|+.|||++.| |.++.++|+.||-+.|..|+++|.+.++.
T Consensus 304 li~ql----------------dgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsv- 366 (435)
T KOG0729|consen 304 LINQL----------------DGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSV- 366 (435)
T ss_pred HHHhc----------------cCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccccc-
Confidence 77654 233458899999999999999999998 89999999999999999999999988754
Q ss_pred cCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHH
Q 002337 573 TSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKA 652 (934)
Q Consensus 573 ~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~a 652 (934)
+.+..++-+|+.+..-+|++++.+|.+|++.+++.. ....+..||..|
T Consensus 367 ----erdir~ellarlcpnstgaeirsvcteagmfairar----------------------------rk~atekdfl~a 414 (435)
T KOG0729|consen 367 ----ERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR----------------------------RKVATEKDFLDA 414 (435)
T ss_pred ----ccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH----------------------------hhhhhHHHHHHH
Confidence 334456889999999999999999999999998752 234566788888
Q ss_pred HHhhhccc
Q 002337 653 MERSKKRN 660 (934)
Q Consensus 653 L~~~k~~~ 660 (934)
..++.+.+
T Consensus 415 v~kvvkgy 422 (435)
T KOG0729|consen 415 VNKVVKGY 422 (435)
T ss_pred HHHHHHHH
Confidence 87775543
No 45
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-30 Score=285.61 Aligned_cols=215 Identities=21% Similarity=0.261 Sum_probs=182.7
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+..+.+ +...+|++++..+..|..| +-++|+||||+||||||||+|||++|+|.|.+|+..+++++-..+.|...
T Consensus 304 ~dVkG~D-EAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGA 382 (752)
T KOG0734|consen 304 EDVKGVD-EAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGA 382 (752)
T ss_pred ccccChH-HHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccH
Confidence 4444454 6788999999999999877 46899999999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
.++|.+|..|+.++||||||||||++..+|... + .....+.|++++ ..+++...+.
T Consensus 383 rRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~----~----~~y~kqTlNQLL----------------vEmDGF~qNe 438 (752)
T KOG0734|consen 383 RRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS----D----QHYAKQTLNQLL----------------VEMDGFKQNE 438 (752)
T ss_pred HHHHHHHHHHHhcCCeEEEEechhhhcccCCcc----H----HHHHHHHHHHHH----------------HHhcCcCcCC
Confidence 999999999999999999999999999865221 1 113344555554 3345556688
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
.|+||||||.|+.||++|.| ||++++.+|.||-+.|.+||++++++... ..+++ ++-+|+-|.||+|+||++|
T Consensus 439 GiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~-~~~VD----~~iiARGT~GFsGAdLaNl 513 (752)
T KOG0734|consen 439 GIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPL-DEDVD----PKIIARGTPGFSGADLANL 513 (752)
T ss_pred ceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCc-ccCCC----HhHhccCCCCCchHHHHHH
Confidence 99999999999999999999 89999999999999999999999987543 33444 5779999999999999999
Q ss_pred HHHHHHHHHH
Q 002337 601 VADAGANLIR 610 (934)
Q Consensus 601 ~~~A~~~ai~ 610 (934)
+..|+..|..
T Consensus 514 VNqAAlkAa~ 523 (752)
T KOG0734|consen 514 VNQAALKAAV 523 (752)
T ss_pred HHHHHHHHHh
Confidence 9999888754
No 46
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.97 E-value=2.4e-28 Score=300.05 Aligned_cols=417 Identities=17% Similarity=0.282 Sum_probs=268.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEecCcccc--ccccchHHHHHHHHHHhhcCCCEEEEEcc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMA--SSERKTSAALAQAFNTAQSYSPTILLLRD 464 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el----------g~~~~~I~~~~L~~--~~~g~~e~~L~~~f~~A~~~~P~IL~IDE 464 (934)
..+++|+||||||||++++++|.++ +.+++.+++..+.+ ++.|+.+..++.+|+++....++||||||
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDE 282 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDE 282 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEec
Confidence 3468999999999999999999998 77899999888874 66789999999999999877899999999
Q ss_pred hhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-----CCChh
Q 002337 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPT 539 (934)
Q Consensus 465 ID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~-----~Ld~a 539 (934)
+|.|.......+ .......+|...++ ++.+.+||+||..+ ..|++
T Consensus 283 ih~l~~~g~~~~-------~~~~~~~~L~~~l~-----------------------~g~i~~IgaTt~~e~~~~~~~d~a 332 (731)
T TIGR02639 283 IHTIVGAGATSG-------GSMDASNLLKPALS-----------------------SGKLRCIGSTTYEEYKNHFEKDRA 332 (731)
T ss_pred HHHHhccCCCCC-------ccHHHHHHHHHHHh-----------------------CCCeEEEEecCHHHHHHHhhhhHH
Confidence 999986432111 11233444544332 67899999998643 47999
Q ss_pred hhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCCh-----HHHHHHHHHHHHHHHHhhcc
Q 002337 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMP-----RDLHALVADAGANLIRKSNS 614 (934)
Q Consensus 540 LrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~-----~DL~~L~~~A~~~ai~r~~~ 614 (934)
++|||. .|.++.|+.+++.+|++.+.......+.-.-.+..+..++..++.|.+ .....|+++|+....-+..
T Consensus 333 l~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~- 410 (731)
T TIGR02639 333 LSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPK- 410 (731)
T ss_pred HHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcc-
Confidence 999996 899999999999999998775543333212235667777777776654 4445566666543211100
Q ss_pred cccCCCCCchhhhhhhhcc--Ccc---------------hhhhhhcCCHHHHHHHHHhhhcccccccCCCCCccchhHHh
Q 002337 615 EVDKNEPGESDLTAKVAHN--DNS---------------SIAATQVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLF 677 (934)
Q Consensus 615 ~~~~~~~~~~~l~~~~~~~--~~~---------------~~~~~~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~ 677 (934)
......-....+...+... .+. ......++++++....+..... ..
T Consensus 411 ~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~-----------------~~ 473 (731)
T TIGR02639 411 AKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIK-----------------RS 473 (731)
T ss_pred cccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHH-----------------HH
Confidence 0000000111111111000 000 0011112222222222211110 00
Q ss_pred hcCC----CCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccccc------------ccchhhhhhHHHHHHHHh
Q 002337 678 SSGL----RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM------------YIGESEKNVRDIFQKARS 741 (934)
Q Consensus 678 ~~~~----~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~------------~~Gese~~v~~lf~~A~~ 741 (934)
..|+ +|...+||+||||||||++|+++|..++.+++.++++++... |+|..+ ...+.+..+.
T Consensus 474 ~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~--~~~l~~~~~~ 551 (731)
T TIGR02639 474 RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQ--GGLLTEAVRK 551 (731)
T ss_pred hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccch--hhHHHHHHHh
Confidence 1122 233458999999999999999999999999999999876431 334322 2234555566
Q ss_pred CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCc--------CCCCCEEEEEEcCCCC-------------
Q 002337 742 ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DSSQDLFIIGASNRPD------------- 800 (934)
Q Consensus 742 ~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~--------~~~~~v~vI~aTNrp~------------- 800 (934)
...+||||||+|.+.+ .+.+.|+..||... -.-+++++|+|||...
T Consensus 552 ~p~~VvllDEieka~~-------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~ 618 (731)
T TIGR02639 552 HPHCVLLLDEIEKAHP-------------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSE 618 (731)
T ss_pred CCCeEEEEechhhcCH-------------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchh
Confidence 7779999999998853 35566666666421 1124688999998742
Q ss_pred ------------CCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcC-------CCCcCC---CHHHHHhhC-CCCC
Q 002337 801 ------------LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF-------KLLEDV---SLYSIAKKC-PPNF 857 (934)
Q Consensus 801 ------------~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~-------~~~~~~---~l~~la~~~-t~g~ 857 (934)
.+.|+++. |||..|.|. |.+.+...+|++..+++. .+.-.+ -++.+++.. ...|
T Consensus 619 ~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~-pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~ 695 (731)
T TIGR02639 619 NVESKSDKAIKKLFSPEFRN--RLDAIIHFN-PLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEF 695 (731)
T ss_pred hhHHHHHHHHHhhcChHHHh--cCCeEEEcC-CCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCccc
Confidence 24677776 999999998 589999999998777642 111111 245566642 4556
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcc
Q 002337 858 TGADMYALCADAWFHAAKRKVLS 880 (934)
Q Consensus 858 sgaDl~~l~~~A~~~A~~r~~~~ 880 (934)
-++.|+.+++.-...++-+.+..
T Consensus 696 GaR~l~r~i~~~~~~~l~~~~l~ 718 (731)
T TIGR02639 696 GARPLARVIQEEIKKPLSDEILF 718 (731)
T ss_pred CchHHHHHHHHHhHHHHHHHHHh
Confidence 67888888888777776665543
No 47
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.8e-30 Score=306.33 Aligned_cols=353 Identities=23% Similarity=0.317 Sum_probs=259.2
Q ss_pred CCCCcCCchHHHHHHH-HHhhccCCCcccc---CCCCceEEEECCCCCcHHHHHHHHHHHhC-----CcEEEEecCcccc
Q 002337 365 SNDFVPLQGDTVKILA-SILAPTLCPSVLS---LKFRVAVLLHGLPGCGKRTVVRYVARRLG-----IHVVEYSCHNLMA 435 (934)
Q Consensus 365 ~~~~~~~~~~~~~~L~-~il~p~l~p~~~~---~~~~~~VLL~GppGtGKTtLaralA~elg-----~~~~~I~~~~L~~ 435 (934)
+.+.+|+.. +..+|. .++.|+++|+.|. +.+++|||+|||||||||.+||++|..+. ..|+.-.+.+..+
T Consensus 264 fd~vggl~~-~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ls 342 (1080)
T KOG0732|consen 264 FDSVGGLEN-YINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLS 342 (1080)
T ss_pred ccccccHHH-HHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhc
Confidence 345555554 555555 4568999998774 89999999999999999999999999883 4566667888999
Q ss_pred ccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhh
Q 002337 436 SSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKE 515 (934)
Q Consensus 436 ~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~ 515 (934)
++.|+.+..++..|++|+.+.|+|+|+||||-|++.++. .+......+...|..+ +
T Consensus 343 kwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs-----kqEqih~SIvSTLLaL-------------------m 398 (1080)
T KOG0732|consen 343 KWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS-----KQEQIHASIVSTLLAL-------------------M 398 (1080)
T ss_pred cccCcHHHHHHHHHHHHhccCceEEeccccccccccccc-----hHHHhhhhHHHHHHHh-------------------c
Confidence 999999999999999999999999999999999997632 2223344455544444 3
Q ss_pred hhhhhcccEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCC
Q 002337 516 IEKICRQQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFM 593 (934)
Q Consensus 516 ~~~~~~~~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv 593 (934)
++..++++|+||||||+++.++|++|| ||++++.++.|+-+.|.+|+..+.+... ..-....+..+|..|.||.
T Consensus 399 dGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~----~~i~~~l~~~la~~t~gy~ 474 (1080)
T KOG0732|consen 399 DGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE----PPISRELLLWLAEETSGYG 474 (1080)
T ss_pred cCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC----CCCCHHHHHHHHHhccccc
Confidence 445569999999999999999999998 7999999999999999999999987654 2234567789999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhcccccccCCCC-----
Q 002337 594 PRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPK----- 668 (934)
Q Consensus 594 ~~DL~~L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~~~~~~i~~pk----- 668 (934)
++||++||.+|++.++++...++...... + . -......+...+|..|+.+.-.........+.
T Consensus 475 gaDlkaLCTeAal~~~~r~~Pq~y~s~~k---l----~-----~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~ 542 (1080)
T KOG0732|consen 475 GADLKALCTEAALIALRRSFPQIYSSSDK---L----L-----IDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLST 542 (1080)
T ss_pred hHHHHHHHHHHhhhhhccccCeeeccccc---c----c-----ccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCc
Confidence 99999999999999998765443221110 0 0 00011224555666665543221111000000
Q ss_pred --Cccc-hhHH-------------------------------hhcCCCCCCcceecCCCCCcchHHHHHHHHHc-CCcEE
Q 002337 669 --LPLL-HKDL-------------------------------FSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC-SLNFL 713 (934)
Q Consensus 669 --~pl~-~~~~-------------------------------~~~~~~~~~~iLl~GppGtGKT~lakalA~~~-~~~~i 713 (934)
.|+. ++.. |.-.+-....+++.|..|.|-+.+.+|+-+.+ +.+..
T Consensus 543 ~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~ 622 (1080)
T KOG0732|consen 543 YLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQ 622 (1080)
T ss_pred ceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchH
Confidence 1111 1000 11122224567888999999999999997665 67777
Q ss_pred EecCccccccc-cchhhhhhHHHHHHHHhCCCcEEEeccccccccC
Q 002337 714 SVKGPELINMY-IGESEKNVRDIFQKARSARPCVIFFDELDSLAPA 758 (934)
Q Consensus 714 ~v~~~~l~~~~-~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~ 758 (934)
+...+.++..- .+..+..+..+|.+||...||||||-.+|.....
T Consensus 623 s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~ 668 (1080)
T KOG0732|consen 623 SLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARV 668 (1080)
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhc
Confidence 77777776665 6677889999999999999999999999887644
No 48
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-30 Score=268.30 Aligned_cols=238 Identities=20% Similarity=0.275 Sum_probs=207.1
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+++++..++++.-++..+|+.||+.+ ++++++||+|||+||||||.||+++|+...+.|+.+-+++|+.+|.|+..
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGp 264 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 264 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccch
Confidence 567888888888888999999999876 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++++|+.|..++|+|+||||||++..++-+.. .+...++.+.+.+++.|+ ++..+++
T Consensus 265 klvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~-----SggerEiQrtmLELLNQl----------------dGFdsrg 323 (440)
T KOG0726|consen 265 KLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSN-----SGGEREIQRTMLELLNQL----------------DGFDSRG 323 (440)
T ss_pred HHHHHHHHHHHhcCCceEEeehhhhhccccccCC-----CccHHHHHHHHHHHHHhc----------------cCccccC
Confidence 9999999999999999999999999998763322 345567887777777654 2334588
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
.|-||.|||+++.|||++.| |.++.|+|+.||+..+..|+++++..+. +..++ .++.+...-+.++|+|+.++
T Consensus 324 DvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mt-l~~dV----nle~li~~kddlSGAdIkAi 398 (440)
T KOG0726|consen 324 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMT-LAEDV----NLEELIMTKDDLSGADIKAI 398 (440)
T ss_pred CeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccc-hhccc----cHHHHhhcccccccccHHHH
Confidence 99999999999999999998 8999999999999999999999998774 34444 46778888888999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhh
Q 002337 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSK 657 (934)
Q Consensus 601 ~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k 657 (934)
|.+|++-|++.. ...++++||.++.+.+-
T Consensus 399 ctEaGllAlRer----------------------------Rm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 399 CTEAGLLALRER----------------------------RMKVTMEDFKKAKEKVL 427 (440)
T ss_pred HHHHhHHHHHHH----------------------------HhhccHHHHHHHHHHHH
Confidence 999999998763 34578899999888763
No 49
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.97 E-value=4.2e-28 Score=294.12 Aligned_cols=421 Identities=16% Similarity=0.239 Sum_probs=265.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEecCcccc--ccccchHHHHHHHHHHhhcCCCEEEEEcch
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMA--SSERKTSAALAQAFNTAQSYSPTILLLRDF 465 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el----------g~~~~~I~~~~L~~--~~~g~~e~~L~~~f~~A~~~~P~IL~IDEI 465 (934)
.++||+||||||||++++.+|..+ +..++.++...++. .+.|+.+..++.++..+....++||||||+
T Consensus 208 ~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEI 287 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEI 287 (758)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccH
Confidence 468999999999999999999875 44555655555553 456788999999999888788999999999
Q ss_pred hhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-----CCChhh
Q 002337 466 DVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPTI 540 (934)
Q Consensus 466 D~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~-----~Ld~aL 540 (934)
|.|...... .+...++..+|+.++. ++.+.+||+||..+ ..|+++
T Consensus 288 h~L~g~g~~-------~~g~~d~~nlLkp~L~-----------------------~g~i~vIgATt~~E~~~~~~~D~AL 337 (758)
T PRK11034 288 HTIIGAGAA-------SGGQVDAANLIKPLLS-----------------------SGKIRVIGSTTYQEFSNIFEKDRAL 337 (758)
T ss_pred HHHhccCCC-------CCcHHHHHHHHHHHHh-----------------------CCCeEEEecCChHHHHHHhhccHHH
Confidence 999864311 1122345556665543 67899999999764 479999
Q ss_pred hcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCc-hHHHHHHHhhcCC-----CChHHHHHHHHHHHHHHHHhhcc
Q 002337 541 RRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-EEFVKDIIGQTSG-----FMPRDLHALVADAGANLIRKSNS 614 (934)
Q Consensus 541 rrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~-~~~L~~la~~t~G-----fv~~DL~~L~~~A~~~ai~r~~~ 614 (934)
.|||. .|.++.|+.+++.+||+.+.......| ++.. +..+...+..+.. +.|.....|+.+|+....-. ..
T Consensus 338 ~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h-~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~-~~ 414 (758)
T PRK11034 338 ARRFQ-KIDITEPSIEETVQIINGLKPKYEAHH-DVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLM-PV 414 (758)
T ss_pred HhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhcc-CCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccC-cc
Confidence 99996 899999999999999998876654433 3332 3444444444443 56677888888887543110 00
Q ss_pred cccCCCCCchhhhhhhhcc--Ccc---------------hhhhhhcCCHHHHHHHHHhhhcccccccCCCCCccchhHHh
Q 002337 615 EVDKNEPGESDLTAKVAHN--DNS---------------SIAATQVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLF 677 (934)
Q Consensus 615 ~~~~~~~~~~~l~~~~~~~--~~~---------------~~~~~~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~ 677 (934)
...+.......+...+... .+. ......++++++....+..........+.
T Consensus 415 ~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~------------ 482 (758)
T PRK11034 415 SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLG------------ 482 (758)
T ss_pred cccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhcccc------------
Confidence 0000000011111111000 000 01111233333333322222111100000
Q ss_pred hcCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccc-----cccchhhhh-----hHHHHHHHHhCCCcEE
Q 002337 678 SSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN-----MYIGESEKN-----VRDIFQKARSARPCVI 747 (934)
Q Consensus 678 ~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~-----~~~Gese~~-----v~~lf~~A~~~~p~vl 747 (934)
..-+|...+||+||||||||++|+++|..++.+|+.++++++.. +++|..... -..+.+..+....+||
T Consensus 483 -~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVl 561 (758)
T PRK11034 483 -HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVL 561 (758)
T ss_pred -CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEE
Confidence 01123457899999999999999999999999999999887643 233322111 1223344455666999
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccCCc--------CCCCCEEEEEEcCCC--------------------
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DSSQDLFIIGASNRP-------------------- 799 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~--------~~~~~v~vI~aTNrp-------------------- 799 (934)
||||+|++.+ .+.+.||..||.-. ..-+++++|+|||.-
T Consensus 562 llDEieka~~-------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~ 628 (758)
T PRK11034 562 LLDEIEKAHP-------------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDA 628 (758)
T ss_pred EeccHhhhhH-------------HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHH
Confidence 9999999852 36667777666321 112578899999932
Q ss_pred -----CCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcC-------CCCcCCC---HHHHHhhC-CCCCCHHHHH
Q 002337 800 -----DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF-------KLLEDVS---LYSIAKKC-PPNFTGADMY 863 (934)
Q Consensus 800 -----~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~-------~~~~~~~---l~~la~~~-t~g~sgaDl~ 863 (934)
..+.|+++. |+|..|.|+ |.+.+...+|+..++++. ++.-.++ ++.|+... ...|-++.|+
T Consensus 629 ~~~~~~~f~pefl~--Rid~ii~f~-~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~ 705 (758)
T PRK11034 629 MEEIKKIFTPEFRN--RLDNIIWFD-HLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMA 705 (758)
T ss_pred HHHHHHhcCHHHHc--cCCEEEEcC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHH
Confidence 125578887 999999998 588888899887665432 2222222 44566543 2334567888
Q ss_pred HHHHHHHHHHHHHHhcc
Q 002337 864 ALCADAWFHAAKRKVLS 880 (934)
Q Consensus 864 ~l~~~A~~~A~~r~~~~ 880 (934)
.++++-....+-+.+..
T Consensus 706 r~i~~~l~~~la~~il~ 722 (758)
T PRK11034 706 RVIQDNLKKPLANELLF 722 (758)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888877777666554
No 50
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.4e-30 Score=275.61 Aligned_cols=263 Identities=21% Similarity=0.280 Sum_probs=196.8
Q ss_pred CCCCcCCchHHHHHHHHHhhccCCCcccc----CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccc
Q 002337 365 SNDFVPLQGDTVKILASILAPTLCPSVLS----LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERK 440 (934)
Q Consensus 365 ~~~~~~~~~~~~~~L~~il~p~l~p~~~~----~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~ 440 (934)
..++++++..+....+.++.|+.+|+.|. .++++|||||||||||||.+|+++|++.|+.|+.|..+.+++++.|+
T Consensus 91 f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE 170 (386)
T KOG0737|consen 91 FDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGE 170 (386)
T ss_pred hhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHH
Confidence 46677887655555666789999999883 57889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHH-HHhcCCCccccccccCCCCchhhhhhh
Q 002337 441 TSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVI-REFTEPSAEDEDEESHGYFPVKEIEKI 519 (934)
Q Consensus 441 ~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L-~~ll~~~~~~~~~~~~g~~~~~~~~~~ 519 (934)
.++.++.+|..|.+.+|+||||||+|.+...| ..+ ..|....+ .+++. +| +|... .
T Consensus 171 ~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~--------dHEa~a~mK~eFM~-~W-------DGl~s------~ 227 (386)
T KOG0737|consen 171 AQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RST--------DHEATAMMKNEFMA-LW-------DGLSS------K 227 (386)
T ss_pred HHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccc--------hHHHHHHHHHHHHH-Hh-------ccccC------C
Confidence 99999999999999999999999999998755 211 12222222 22322 11 11111 1
Q ss_pred hcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHH
Q 002337 520 CRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHA 599 (934)
Q Consensus 520 ~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~ 599 (934)
.+.+|+|+||||+|.++|.++.||+.+.++++.|+..+|.+||+.+++.... . .+.++.++|..|.||+|.||..
T Consensus 228 ~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~-e----~~vD~~~iA~~t~GySGSDLke 302 (386)
T KOG0737|consen 228 DSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKL-E----DDVDLDEIAQMTEGYSGSDLKE 302 (386)
T ss_pred CCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhccccc-C----cccCHHHHHHhcCCCcHHHHHH
Confidence 1446999999999999999999999999999999999999999999976533 3 3445789999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCCchhhhhh-hhccCcchhhhhhcCCHHHHHHHHHhh
Q 002337 600 LVADAGANLIRKSNSEVDKNEPGESDLTAK-VAHNDNSSIAATQVMGKEDLVKAMERS 656 (934)
Q Consensus 600 L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~i~~ed~~~aL~~~ 656 (934)
+|+.|+...++........ .......... ............+.+.++||..+...+
T Consensus 303 lC~~Aa~~~ire~~~~~~~-~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v 359 (386)
T KOG0737|consen 303 LCRLAALRPIRELLVSETG-LLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRV 359 (386)
T ss_pred HHHHHhHhHHHHHHHhccc-chhhhhhhhhccCCcccccccccCcccHHHHHHHHHhh
Confidence 9999999888764322100 0000100000 000000112225678899999988854
No 51
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-29 Score=257.03 Aligned_cols=220 Identities=17% Similarity=0.265 Sum_probs=191.7
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.++++++-+.++..+....|+.|...+ ++.+++|||||||||||||+|++++|+...+.|+.+.+++++.+|-|+..
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegp 234 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGP 234 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCc
Confidence 566777666667777788999887665 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|..|+.++|+|+||||+|+++.++-+. +.+...++..+|-+++.|+ ++.....
T Consensus 235 rmvrdvfrlakenapsiifideidaiatkrfda-----qtgadrevqril~ellnqm----------------dgfdq~~ 293 (408)
T KOG0727|consen 235 RMVRDVFRLAKENAPSIIFIDEIDAIATKRFDA-----QTGADREVQRILIELLNQM----------------DGFDQTT 293 (408)
T ss_pred HHHHHHHHHHhccCCcEEEeehhhhHhhhhccc-----cccccHHHHHHHHHHHHhc----------------cCcCccc
Confidence 999999999999999999999999999877432 3455678888888887653 3344477
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
+|-||.+||+.+.+||++.| |.++.|+||.||..|+.-++...+.++.. ..+ .+++.+..+.+..+++|+.++
T Consensus 294 nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~l-s~~----vdle~~v~rpdkis~adi~ai 368 (408)
T KOG0727|consen 294 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNL-SDE----VDLEDLVARPDKISGADINAI 368 (408)
T ss_pred ceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccC-Ccc----cCHHHHhcCccccchhhHHHH
Confidence 89999999999999999998 89999999999999999999999987743 333 447888889999999999999
Q ss_pred HHHHHHHHHHh
Q 002337 601 VADAGANLIRK 611 (934)
Q Consensus 601 ~~~A~~~ai~r 611 (934)
|++|++.+.+.
T Consensus 369 cqeagm~avr~ 379 (408)
T KOG0727|consen 369 CQEAGMLAVRE 379 (408)
T ss_pred HHHHhHHHHHh
Confidence 99999999875
No 52
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-29 Score=256.30 Aligned_cols=237 Identities=20% Similarity=0.273 Sum_probs=202.4
Q ss_pred CCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHH
Q 002337 367 DFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSA 443 (934)
Q Consensus 367 ~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~ 443 (934)
-.++++.++.+.-+-+..|..||+.| ++..++|+|||||||+|||.|+|++|....+.|+.+++++++.++.|+...
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsr 227 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSR 227 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHH
Confidence 34566666766667778999999887 578889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhccc
Q 002337 444 ALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ 523 (934)
Q Consensus 444 ~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ 523 (934)
.++.+|-.|+.++|+|||+||||++...+...+ .+..+++...+.+++.|+. +.....+
T Consensus 228 mvrelfvmarehapsiifmdeidsigs~r~e~~-----~ggdsevqrtmlellnqld----------------gfeatkn 286 (404)
T KOG0728|consen 228 MVRELFVMAREHAPSIIFMDEIDSIGSSRVESG-----SGGDSEVQRTMLELLNQLD----------------GFEATKN 286 (404)
T ss_pred HHHHHHHHHHhcCCceEeeecccccccccccCC-----CCccHHHHHHHHHHHHhcc----------------ccccccc
Confidence 999999999999999999999999998653322 2356788888888876642 3344778
Q ss_pred EEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHH
Q 002337 524 VLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALV 601 (934)
Q Consensus 524 ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~ 601 (934)
+-||.+||+++-+||++.| |.++.|+||+|+++.|.+||+.+.+++.. . ....+..+|.+..|-+|+++...|
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl-~----rgi~l~kiaekm~gasgaevk~vc 361 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL-T----RGINLRKIAEKMPGASGAEVKGVC 361 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhch-h----cccCHHHHHHhCCCCccchhhhhh
Confidence 9999999999999999998 89999999999999999999999987743 2 223478999999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhh
Q 002337 602 ADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSK 657 (934)
Q Consensus 602 ~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k 657 (934)
.+|++.+++.. ...+++|||.-|..++-
T Consensus 362 teagm~alrer----------------------------rvhvtqedfemav~kvm 389 (404)
T KOG0728|consen 362 TEAGMYALRER----------------------------RVHVTQEDFEMAVAKVM 389 (404)
T ss_pred hhhhHHHHHHh----------------------------hccccHHHHHHHHHHHH
Confidence 99999998753 34578899988877654
No 53
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.8e-28 Score=285.56 Aligned_cols=221 Identities=20% Similarity=0.269 Sum_probs=187.2
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+..+.+ +.+.+|.+++..+.+|..| +.+.|+|+||+||||||||.||||+|+|.|.+|+.+++++++....+...
T Consensus 311 kDVAG~d-eAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~a 389 (774)
T KOG0731|consen 311 KDVAGVD-EAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGA 389 (774)
T ss_pred ccccCcH-HHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccch
Confidence 4454554 6889999999999999877 68999999999999999999999999999999999999999998888889
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
.+++.+|..|+.++|||+||||||+++..+... ...+...+-.+.|++++ ..+++.....
T Consensus 390 srvr~lf~~ar~~aP~iifideida~~~~r~G~----~~~~~~~e~e~tlnQll----------------~emDgf~~~~ 449 (774)
T KOG0731|consen 390 SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGK----GTGGGQDEREQTLNQLL----------------VEMDGFETSK 449 (774)
T ss_pred HHHHHHHHHhhccCCeEEEeccccccccccccc----ccCCCChHHHHHHHHHH----------------HHhcCCcCCC
Confidence 999999999999999999999999999866310 01122344556666664 3345555678
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
.|+|+|+||+++.||++++| ||++.|.++.|+..+|.+|++.|++.... + ..+..+.++|..|+||+|+||.++
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~-~e~~dl~~~a~~t~gf~gadl~n~ 525 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---D-DEDVDLSKLASLTPGFSGADLANL 525 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---C-cchhhHHHHHhcCCCCcHHHHHhh
Confidence 89999999999999999999 89999999999999999999999976543 2 224456679999999999999999
Q ss_pred HHHHHHHHHHh
Q 002337 601 VADAGANLIRK 611 (934)
Q Consensus 601 ~~~A~~~ai~r 611 (934)
|.+|+..+.++
T Consensus 526 ~neaa~~a~r~ 536 (774)
T KOG0731|consen 526 CNEAALLAARK 536 (774)
T ss_pred hhHHHHHHHHh
Confidence 99999998875
No 54
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-28 Score=256.29 Aligned_cols=222 Identities=22% Similarity=0.299 Sum_probs=179.4
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCcccc--CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSA 443 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~~--~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~ 443 (934)
.+..++.+.....-+.+++|...|+.|. .++-++||||||||||||.||+++|-+.+..|+.|+.++|++++.|+++.
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHH
Confidence 4566676533333345578999999884 34568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhccc
Q 002337 444 ALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ 523 (934)
Q Consensus 444 ~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ 523 (934)
.++++|+.|+.+.|+||||||||.++..++... +...++... +++-|+.+. ......
T Consensus 213 LVknLFemARe~kPSIIFiDEiDslcg~r~enE-seasRRIKT-------EfLVQMqGV---------------G~d~~g 269 (439)
T KOG0739|consen 213 LVKNLFEMARENKPSIIFIDEIDSLCGSRSENE-SEASRRIKT-------EFLVQMQGV---------------GNDNDG 269 (439)
T ss_pred HHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc-hHHHHHHHH-------HHHHhhhcc---------------ccCCCc
Confidence 999999999999999999999999998653221 111112222 222222111 112678
Q ss_pred EEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHH
Q 002337 524 VLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVAD 603 (934)
Q Consensus 524 ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~ 603 (934)
|+|+|+||-|+.||.++||||...|.+|.|+...|..+++.++...+. .-.+.+++++++.|+||+|+|+.-+++.
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~----~LT~~d~~eL~~kTeGySGsDisivVrD 345 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPH----VLTEQDFKELARKTEGYSGSDISIVVRD 345 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCcc----ccchhhHHHHHhhcCCCCcCceEEEehh
Confidence 999999999999999999999999999999999999999999876543 3346778999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 002337 604 AGANLIRKSNS 614 (934)
Q Consensus 604 A~~~ai~r~~~ 614 (934)
|.++-+++.+.
T Consensus 346 almePvRkvqs 356 (439)
T KOG0739|consen 346 ALMEPVRKVQS 356 (439)
T ss_pred hhhhhHHHhhh
Confidence 99999887543
No 55
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.95 E-value=3.2e-27 Score=268.70 Aligned_cols=239 Identities=18% Similarity=0.284 Sum_probs=189.5
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+++|++....+....+..|+.+|..+ ++.+++++|||||||||||++++++|++++.+++.+.++++...+.++++
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~ 224 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGP 224 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhH
Confidence 445565543333444445788888765 56789999999999999999999999999999999999999998999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|..|+..+|+|+||||+|.++..+.... .+...++...+.+++.++ ++.....
T Consensus 225 ~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~-----~~~d~~~~r~l~~LL~~l----------------d~~~~~~ 283 (398)
T PTZ00454 225 RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-----TGADREVQRILLELLNQM----------------DGFDQTT 283 (398)
T ss_pred HHHHHHHHHHHhcCCeEEEEECHhhhcccccccc-----CCccHHHHHHHHHHHHHh----------------hccCCCC
Confidence 9999999999999999999999999987542221 112234444444444321 1122246
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
+++||+|||+++.+|++++| ||+++|.++.|+.++|.+|++.+++++.. ..+ ..+..++..|+||+++||.++
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l-~~d----vd~~~la~~t~g~sgaDI~~l 358 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL-SEE----VDLEDFVSRPEKISAADIAAI 358 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC-Ccc----cCHHHHHHHcCCCCHHHHHHH
Confidence 78999999999999999988 89999999999999999999999876542 323 346889999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhc
Q 002337 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKK 658 (934)
Q Consensus 601 ~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~ 658 (934)
|++|++.++++. ...++++||..|++++..
T Consensus 359 ~~eA~~~A~r~~----------------------------~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 359 CQEAGMQAVRKN----------------------------RYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HHHHHHHHHHcC----------------------------CCccCHHHHHHHHHHHHh
Confidence 999999998652 235788999999988644
No 56
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.9e-27 Score=267.29 Aligned_cols=217 Identities=22% Similarity=0.348 Sum_probs=179.8
Q ss_pred CCcCCchHHHHHHHHH-hhccCCCcccc---CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 367 DFVPLQGDTVKILASI-LAPTLCPSVLS---LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 367 ~~~~~~~~~~~~L~~i-l~p~l~p~~~~---~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
+++++. +.++.+.+. +.|..+|..|. ++.+.|||||||||||||.||.++|...+..|+.|.++++.++|.|.++
T Consensus 668 digg~~-~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSE 746 (952)
T KOG0735|consen 668 DIGGLF-EAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASE 746 (952)
T ss_pred ecccHH-HHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccH
Confidence 334443 455666655 58888888773 6778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..+|.+|..|+..+|||+|+||+|.++|+|.. |..+...+|.. +++.+ +++...-.
T Consensus 747 q~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh-----DsTGVTDRVVN---QlLTe----------------lDG~Egl~ 802 (952)
T KOG0735|consen 747 QNVRDLFERAQSAKPCILFFDEFDSIAPKRGH-----DSTGVTDRVVN---QLLTE----------------LDGAEGLD 802 (952)
T ss_pred HHHHHHHHHhhccCCeEEEeccccccCcccCC-----CCCCchHHHHH---HHHHh----------------hccccccc
Confidence 99999999999999999999999999997743 33455555443 33332 22333467
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
.|.|+|+|.+|+-|||++.| |+++-+..+.|++.+|++|++.+..... .+.+.+++-+|..|+||+|+||..|
T Consensus 803 GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~-----~~~~vdl~~~a~~T~g~tgADlq~l 877 (952)
T KOG0735|consen 803 GVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLL-----KDTDVDLECLAQKTDGFTGADLQSL 877 (952)
T ss_pred eEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccC-----CccccchHHHhhhcCCCchhhHHHH
Confidence 89999999999999999998 8999999999999999999999875432 2335568999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 002337 601 VADAGANLIRKSN 613 (934)
Q Consensus 601 ~~~A~~~ai~r~~ 613 (934)
+..|.+.+..+..
T Consensus 878 l~~A~l~avh~~l 890 (952)
T KOG0735|consen 878 LYNAQLAAVHEIL 890 (952)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888876643
No 57
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.94 E-value=3.3e-26 Score=261.93 Aligned_cols=239 Identities=18% Similarity=0.255 Sum_probs=188.1
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.++.++...+.+....+..|+.+|..+ ++.++.++|||||||||||++++++|++++.+++.+.++++.+.+.|+..
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~ 262 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGP 262 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHH
Confidence 445566544443333444678887654 57888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|..|..++|+|+||||+|.+...+.... .+...++...+.+++.+ .++.....
T Consensus 263 ~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~-----sgg~~e~qr~ll~LL~~----------------Ldg~~~~~ 321 (438)
T PTZ00361 263 KLVRELFRVAEENAPSIVFIDEIDAIGTKRYDAT-----SGGEKEIQRTMLELLNQ----------------LDGFDSRG 321 (438)
T ss_pred HHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCC-----CcccHHHHHHHHHHHHH----------------HhhhcccC
Confidence 9999999999999999999999999987543221 11223344444343321 11122356
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
++.||+|||+++.+|++++| ||+++|.++.|+.++|.+||+.+++.+.. ..+ .+++.++..++||+++|+.++
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l-~~d----vdl~~la~~t~g~sgAdI~~i 396 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL-AED----VDLEEFIMAKDELSGADIKAI 396 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC-CcC----cCHHHHHHhcCCCCHHHHHHH
Confidence 79999999999999999987 89999999999999999999999876542 323 346889999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhc
Q 002337 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKK 658 (934)
Q Consensus 601 ~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~ 658 (934)
|++|++.|+++. ...++++||..|++++..
T Consensus 397 ~~eA~~~Alr~~----------------------------r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 397 CTEAGLLALRER----------------------------RMKVTQADFRKAKEKVLY 426 (438)
T ss_pred HHHHHHHHHHhc----------------------------CCccCHHHHHHHHHHHHh
Confidence 999999998752 235789999999998754
No 58
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.94 E-value=3.7e-26 Score=261.13 Aligned_cols=242 Identities=21% Similarity=0.284 Sum_probs=192.1
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+.++++....+....+..|+.+|..+ +..++.+||||||||||||++|+++|++++.+++.++++++...+.|+++
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~ 210 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGA 210 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchH
Confidence 345666655555555556788888655 56788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|+.|...+|+||||||+|.+...+...+.. ...++...+..++... ++.....
T Consensus 211 ~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~-----~~~~~~~~l~~lL~~l----------------d~~~~~~ 269 (389)
T PRK03992 211 RLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTS-----GDREVQRTLMQLLAEM----------------DGFDPRG 269 (389)
T ss_pred HHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCC-----ccHHHHHHHHHHHHhc----------------cccCCCC
Confidence 999999999999999999999999998755332211 1234444444444321 1112246
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
++.||+|||+++.+|++++| ||++.|.++.|+.++|.+|++.++++... ..+ ..+..++..|+||+++|+..+
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~----~~~~~la~~t~g~sgadl~~l 344 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADD----VDLEELAELTEGASGADLKAI 344 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCc----CCHHHHHHHcCCCCHHHHHHH
Confidence 79999999999999999987 89999999999999999999999876532 222 336889999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhcccc
Q 002337 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNA 661 (934)
Q Consensus 601 ~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~~~~ 661 (934)
|++|++.++++. ...++.+||..|++.++....
T Consensus 345 ~~eA~~~a~~~~----------------------------~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 345 CTEAGMFAIRDD----------------------------RTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred HHHHHHHHHHcC----------------------------CCCcCHHHHHHHHHHHhcccc
Confidence 999999987641 234788999999998866443
No 59
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.94 E-value=2.8e-26 Score=266.19 Aligned_cols=215 Identities=18% Similarity=0.207 Sum_probs=165.9
Q ss_pred CCcCCchHHHHHHHHHhhcc-CCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHH
Q 002337 367 DFVPLQGDTVKILASILAPT-LCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAAL 445 (934)
Q Consensus 367 ~~~~~~~~~~~~L~~il~p~-l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L 445 (934)
+.+|++ ..++.+.+....+ .....+++++++|||||||||||||++|+++|++++.+++.+++..+.+++.|+++.++
T Consensus 229 dvgGl~-~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l 307 (489)
T CHL00195 229 DIGGLD-NLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRM 307 (489)
T ss_pred HhcCHH-HHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHH
Confidence 344543 3444554432221 12234567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEE
Q 002337 446 AQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVL 525 (934)
Q Consensus 446 ~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~Vi 525 (934)
+++|..|+..+||||||||||.+...+...+ + .+...++...+..++. ....+|+
T Consensus 308 ~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~---d-~~~~~rvl~~lL~~l~---------------------~~~~~V~ 362 (489)
T CHL00195 308 RQMIRIAEALSPCILWIDEIDKAFSNSESKG---D-SGTTNRVLATFITWLS---------------------EKKSPVF 362 (489)
T ss_pred HHHHHHHHhcCCcEEEehhhhhhhccccCCC---C-chHHHHHHHHHHHHHh---------------------cCCCceE
Confidence 9999999999999999999999876322111 1 1222333332222221 1256799
Q ss_pred EEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHH
Q 002337 526 LVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVAD 603 (934)
Q Consensus 526 VIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~ 603 (934)
||||||+++.||++++| ||++.+.++.|+.++|.+|++.++++... +...+..++.+|..|+||+|+||..+|.+
T Consensus 363 vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~---~~~~~~dl~~La~~T~GfSGAdI~~lv~e 439 (489)
T CHL00195 363 VVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP---KSWKKYDIKKLSKLSNKFSGAEIEQSIIE 439 (489)
T ss_pred EEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC---CcccccCHHHHHhhcCCCCHHHHHHHHHH
Confidence 99999999999999988 89999999999999999999999976432 11123457899999999999999999999
Q ss_pred HHHHHHH
Q 002337 604 AGANLIR 610 (934)
Q Consensus 604 A~~~ai~ 610 (934)
|...+..
T Consensus 440 A~~~A~~ 446 (489)
T CHL00195 440 AMYIAFY 446 (489)
T ss_pred HHHHHHH
Confidence 9877764
No 60
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-26 Score=268.21 Aligned_cols=213 Identities=20% Similarity=0.264 Sum_probs=185.2
Q ss_pred HHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHH
Q 002337 374 DTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFN 450 (934)
Q Consensus 374 ~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~ 450 (934)
+..+.+.+++..+..|..| +.+.|+||||+||||||||+|||++|++.+.+|+.+++++++.-+.|-...++|..|.
T Consensus 157 Eakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~ 236 (596)
T COG0465 157 EAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE 236 (596)
T ss_pred HHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHH
Confidence 6788999999999999877 5689999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEec
Q 002337 451 TAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (934)
Q Consensus 451 ~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatT 530 (934)
+|++++|||+||||||++...+... ..+...+..+.|++++. .+++...+..|+++|+|
T Consensus 237 qAkk~aP~IIFIDEiDAvGr~Rg~g-----~GggnderEQTLNQlLv----------------EmDGF~~~~gviviaaT 295 (596)
T COG0465 237 QAKKNAPCIIFIDEIDAVGRQRGAG-----LGGGNDEREQTLNQLLV----------------EMDGFGGNEGVIVIAAT 295 (596)
T ss_pred HhhccCCCeEEEehhhhcccccCCC-----CCCCchHHHHHHHHHHh----------------hhccCCCCCceEEEecC
Confidence 9999999999999999998855221 12334566777777753 34455557899999999
Q ss_pred CCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 002337 531 DSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANL 608 (934)
Q Consensus 531 n~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~a 608 (934)
|+|+-+|++|.| ||++.|.++.||-.+|.+|++.|+++... ..+++ +..+|+.|+||+++|+.+++.+|+..+
T Consensus 296 NRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l-~~~Vd----l~~iAr~tpGfsGAdL~nl~NEAal~a 370 (596)
T COG0465 296 NRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL-AEDVD----LKKIARGTPGFSGADLANLLNEAALLA 370 (596)
T ss_pred CCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC-CCcCC----HHHHhhhCCCcccchHhhhHHHHHHHH
Confidence 999999999999 89999999999999999999999876543 44444 577999999999999999999999998
Q ss_pred HHhh
Q 002337 609 IRKS 612 (934)
Q Consensus 609 i~r~ 612 (934)
.++.
T Consensus 371 ar~n 374 (596)
T COG0465 371 ARRN 374 (596)
T ss_pred HHhc
Confidence 8764
No 61
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.94 E-value=2.5e-24 Score=266.09 Aligned_cols=425 Identities=19% Similarity=0.264 Sum_probs=253.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEecCcccc--ccccchHHHHHHHHHHhhc-CCCEEEEEcc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMA--SSERKTSAALAQAFNTAQS-YSPTILLLRD 464 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el----------g~~~~~I~~~~L~~--~~~g~~e~~L~~~f~~A~~-~~P~IL~IDE 464 (934)
.+++|+||||||||++++.+|..+ +.+++.++...+.+ .+.|+.+..++++++++.. ..++||||||
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDE 288 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDE 288 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 468999999999999999999987 25577777777664 5678899999999998864 4689999999
Q ss_pred hhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-----CCChh
Q 002337 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPT 539 (934)
Q Consensus 465 ID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~-----~Ld~a 539 (934)
+|.|...++..+ ......+|...++ ++.+.+||||+..+ .++++
T Consensus 289 ih~l~~~g~~~~--------~~d~~n~Lkp~l~-----------------------~G~l~~IgaTT~~e~~~~~~~d~A 337 (852)
T TIGR03345 289 AHTLIGAGGQAG--------QGDAANLLKPALA-----------------------RGELRTIAATTWAEYKKYFEKDPA 337 (852)
T ss_pred hHHhccCCCccc--------cccHHHHhhHHhh-----------------------CCCeEEEEecCHHHHhhhhhccHH
Confidence 999986432111 1122334444332 67899999998643 38999
Q ss_pred hhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCCh-----HHHHHHHHHHHHHH-HHhhc
Q 002337 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMP-----RDLHALVADAGANL-IRKSN 613 (934)
Q Consensus 540 LrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~-----~DL~~L~~~A~~~a-i~r~~ 613 (934)
++|||. .|.++.|+.+++.+||+.+.+.....+.-.-.+..+..++..+++|.+ .....|+.+|+... +....
T Consensus 338 L~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~ 416 (852)
T TIGR03345 338 LTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNA 416 (852)
T ss_pred HHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccC
Confidence 999995 899999999999999987765443322111236667778888877554 44455566554322 11000
Q ss_pred cc-------------------ccCCC----CCc-h--hhh-------hhhhccCcchhhh--------------------
Q 002337 614 SE-------------------VDKNE----PGE-S--DLT-------AKVAHNDNSSIAA-------------------- 640 (934)
Q Consensus 614 ~~-------------------~~~~~----~~~-~--~l~-------~~~~~~~~~~~~~-------------------- 640 (934)
.. ...+. ... . .+. .........+...
T Consensus 417 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (852)
T TIGR03345 417 TPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILALRAELEADADA 496 (852)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 00 00000 000 0 000 0000000000000
Q ss_pred -----------------------------hhcCCHHHHHHHHHhhhcccccccCCCCCccchhH----------------
Q 002337 641 -----------------------------TQVMGKEDLVKAMERSKKRNASALGAPKLPLLHKD---------------- 675 (934)
Q Consensus 641 -----------------------------~~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~---------------- 675 (934)
...++.+|+...+.+. -|.|...+...+
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~-------tgip~~~~~~~e~~~l~~l~~~L~~~v~ 569 (852)
T TIGR03345 497 PADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADW-------TGIPVGRMVRDEIEAVLSLPDRLAERVI 569 (852)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHH-------HCCCchhhchhHHHHHHHHHHHhcCeEc
Confidence 0001112211111110 111211010000
Q ss_pred ------------H--hhcCCC---CCC-cceecCCCCCcchHHHHHHHHHc---CCcEEEecCcccccc-----------
Q 002337 676 ------------L--FSSGLR---KRS-GVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM----------- 723 (934)
Q Consensus 676 ------------~--~~~~~~---~~~-~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~----------- 723 (934)
+ ...|+. +|. .+||+||||+|||.+|+++|..+ ...|+.++++++...
T Consensus 570 GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~ 649 (852)
T TIGR03345 570 GQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPP 649 (852)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCC
Confidence 0 111332 233 37999999999999999999988 457899998776322
Q ss_pred -ccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCc--------CCCCCEEEEE
Q 002337 724 -YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DSSQDLFIIG 794 (934)
Q Consensus 724 -~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~--------~~~~~v~vI~ 794 (934)
|+|..+.. .+.+..+..+++||+|||||...+ .+.+.|+..||.-. -.-++.+||.
T Consensus 650 gyvg~~~~g--~L~~~v~~~p~svvllDEieka~~-------------~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~ 714 (852)
T TIGR03345 650 GYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAHP-------------DVLELFYQVFDKGVMEDGEGREIDFKNTVILL 714 (852)
T ss_pred Ccccccccc--hHHHHHHhCCCcEEEEechhhcCH-------------HHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence 55544332 244555677889999999997653 24455555554221 1125688888
Q ss_pred EcCCCC-----------------------------CCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcC-------
Q 002337 795 ASNRPD-----------------------------LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF------- 838 (934)
Q Consensus 795 aTNrp~-----------------------------~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~------- 838 (934)
|||... .+.|+++. |++ .|.|. |.+.+....|+...+...
T Consensus 715 TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~-pLs~e~l~~Iv~~~L~~l~~rl~~~ 790 (852)
T TIGR03345 715 TSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYL-PLDDDVLAAIVRLKLDRIARRLKEN 790 (852)
T ss_pred eCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeC-CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 998621 14577777 997 66676 688899999987665432
Q ss_pred -CCCcCCC---HHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002337 839 -KLLEDVS---LYSIAKKCP-PNFTGADMYALCADAWFHAAKRKVLS 880 (934)
Q Consensus 839 -~~~~~~~---l~~la~~~t-~g~sgaDl~~l~~~A~~~A~~r~~~~ 880 (934)
++.-.++ ++.|++.+. ..|-++.|..+++.-...++-+.+..
T Consensus 791 ~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~l~ 837 (852)
T TIGR03345 791 HGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILE 837 (852)
T ss_pred cCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 2211222 456666642 23457788888888777776665543
No 62
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.93 E-value=4.7e-24 Score=264.97 Aligned_cols=428 Identities=18% Similarity=0.278 Sum_probs=261.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEecCcccc--ccccchHHHHHHHHHHhhcCCCEEEEEcc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMA--SSERKTSAALAQAFNTAQSYSPTILLLRD 464 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el----------g~~~~~I~~~~L~~--~~~g~~e~~L~~~f~~A~~~~P~IL~IDE 464 (934)
..+++|+||||||||++++.+|.++ +.+++.++...+.+ ++.|+.+..++.+++++....++||||||
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDE 279 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDE 279 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4478999999999999999999987 46889999888774 56788999999999999877899999999
Q ss_pred hhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-----CCChh
Q 002337 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPT 539 (934)
Q Consensus 465 ID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~-----~Ld~a 539 (934)
+|.|.......+ ...+..+|+..+ .++.+.+||+|+..+ ..+++
T Consensus 280 ih~l~~~g~~~g--------~~~~a~lLkp~l-----------------------~rg~l~~IgaTt~~ey~~~ie~D~a 328 (821)
T CHL00095 280 VHTLIGAGAAEG--------AIDAANILKPAL-----------------------ARGELQCIGATTLDEYRKHIEKDPA 328 (821)
T ss_pred HHHHhcCCCCCC--------cccHHHHhHHHH-----------------------hCCCcEEEEeCCHHHHHHHHhcCHH
Confidence 999986432111 113344444433 267889999998764 47899
Q ss_pred hhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCCh-----HHHHHHHHHHHHHHHHhhcc
Q 002337 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMP-----RDLHALVADAGANLIRKSNS 614 (934)
Q Consensus 540 LrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~-----~DL~~L~~~A~~~ai~r~~~ 614 (934)
+.+||. .+.++.|+.++...|++.+.......+.-.-.++.+..++..+++|.+ .....|+.+|+...--....
T Consensus 329 L~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~ 407 (821)
T CHL00095 329 LERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSR 407 (821)
T ss_pred HHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhhccC
Confidence 999996 789999999999999987654332222111235556777777777554 44445666655433111000
Q ss_pred c---cc-----------------CCCCC--ch-------hhhhhhhc------cCcchhhhhhcCCHHHHHHHHHhhhcc
Q 002337 615 E---VD-----------------KNEPG--ES-------DLTAKVAH------NDNSSIAATQVMGKEDLVKAMERSKKR 659 (934)
Q Consensus 615 ~---~~-----------------~~~~~--~~-------~l~~~~~~------~~~~~~~~~~~i~~ed~~~aL~~~k~~ 659 (934)
. .+ ..... .. .+...... ...........++.+|+...+....
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~t-- 485 (821)
T CHL00095 408 LPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPVVTEEDIAEIVSAWT-- 485 (821)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHHHHHHH--
Confidence 0 00 00000 00 00000000 0000000012345555544433221
Q ss_pred cccccCCCCCcc--------------------chhH-------Hhh---cCC----CCCCcceecCCCCCcchHHHHHHH
Q 002337 660 NASALGAPKLPL--------------------LHKD-------LFS---SGL----RKRSGVLLYGPPGTGKTLLAKAVA 705 (934)
Q Consensus 660 ~~~~i~~pk~pl--------------------~~~~-------~~~---~~~----~~~~~iLl~GppGtGKT~lakalA 705 (934)
|.|...+ -+.+ .+. .|+ +|...+||+||+|||||++|+++|
T Consensus 486 -----gip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA 560 (821)
T CHL00095 486 -----GIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALA 560 (821)
T ss_pred -----CCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHH
Confidence 1111000 0000 011 122 122347899999999999999999
Q ss_pred HHc---CCcEEEecCccccc-----c-------ccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHH
Q 002337 706 TEC---SLNFLSVKGPELIN-----M-------YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMD 770 (934)
Q Consensus 706 ~~~---~~~~i~v~~~~l~~-----~-------~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~ 770 (934)
..+ +.+++.++++++.. + |+|..+ ...+.+..+....+||+|||+|.+.+
T Consensus 561 ~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~~------------- 625 (821)
T CHL00095 561 SYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAHP------------- 625 (821)
T ss_pred HHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCCH-------------
Confidence 986 46789998877632 1 344322 23455666666669999999998853
Q ss_pred HHHHhhhhhccCCc--------CCCCCEEEEEEcCCCCC-------------------------------------CChh
Q 002337 771 RVVSQMLAEIDGLN--------DSSQDLFIIGASNRPDL-------------------------------------IDPA 805 (934)
Q Consensus 771 ~v~~~lL~~ldg~~--------~~~~~v~vI~aTNrp~~-------------------------------------lD~a 805 (934)
.+.+.|+..||.-. -..++.++|.|||.... +.|+
T Consensus 626 ~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pe 705 (821)
T CHL00095 626 DIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPE 705 (821)
T ss_pred HHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHH
Confidence 35566666666321 12357889999986421 2356
Q ss_pred hhCCCCcceeeeecCCCCHHHHHHHHHHHHhcC-------CCCcCCC---HHHHHhhC-CCCCCHHHHHHHHHHHHHHHH
Q 002337 806 LLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF-------KLLEDVS---LYSIAKKC-PPNFTGADMYALCADAWFHAA 874 (934)
Q Consensus 806 llrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~-------~~~~~~~---l~~la~~~-t~g~sgaDl~~l~~~A~~~A~ 874 (934)
++. |+|..|.|. |.+.+...+|++..++.. ++.-.++ ...+++.+ ...|-++.|+.+++.-...++
T Consensus 706 fln--Rid~ii~F~-pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l 782 (821)
T CHL00095 706 FLN--RLDEIIVFR-QLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPL 782 (821)
T ss_pred Hhc--cCCeEEEeC-CCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHH
Confidence 776 999999998 588899999987666532 1111111 44566652 234556788888887777676
Q ss_pred HHHhccc
Q 002337 875 KRKVLSS 881 (934)
Q Consensus 875 ~r~~~~~ 881 (934)
-+.+...
T Consensus 783 ~~~~l~~ 789 (821)
T CHL00095 783 AEEVLSF 789 (821)
T ss_pred HHHHHhC
Confidence 6665443
No 63
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.9e-25 Score=262.73 Aligned_cols=237 Identities=20% Similarity=0.316 Sum_probs=186.6
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCcccc---CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVLS---LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~~---~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+.+++..........+..|+.++..+. .+++.++|||||||||||++++++|.+++.+|+.+.++++++++.|+++
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGese 321 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESE 321 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHH
Confidence 3344454433333444457777777553 5788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHH-HHHHHHhcCCCccccccccCCCCchhhhhhhhc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEV-ASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev-~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~ 521 (934)
++++++|..|+..+||||||||+|++++.++.... ....++ .+++..+ ++....
T Consensus 322 k~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~-----~~~~r~~~~lL~~~--------------------d~~e~~ 376 (494)
T COG0464 322 KNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED-----GSGRRVVGQLLTEL--------------------DGIEKA 376 (494)
T ss_pred HHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc-----hHHHHHHHHHHHHh--------------------cCCCcc
Confidence 99999999999999999999999999986543221 011122 2222222 112235
Q ss_pred ccEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHH
Q 002337 522 QQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHA 599 (934)
Q Consensus 522 ~~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~ 599 (934)
..|+||+|||+++.+|++++| ||+..+.++.||..+|.+|++.+++..... ...+..++.++..|.||+++|+..
T Consensus 377 ~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~---~~~~~~~~~l~~~t~~~sgadi~~ 453 (494)
T COG0464 377 EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP---LAEDVDLEELAEITEGYSGADIAA 453 (494)
T ss_pred CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc---chhhhhHHHHHHHhcCCCHHHHHH
Confidence 669999999999999999999 999999999999999999999999754321 223456788999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhh
Q 002337 600 LVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSK 657 (934)
Q Consensus 600 L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k 657 (934)
+|++|.+.++++.. ...++++||..+++..+
T Consensus 454 i~~ea~~~~~~~~~---------------------------~~~~~~~~~~~a~~~~~ 484 (494)
T COG0464 454 LVREAALEALREAR---------------------------RREVTLDDFLDALKKIK 484 (494)
T ss_pred HHHHHHHHHHHHhc---------------------------cCCccHHHHHHHHHhcC
Confidence 99999999987531 23578899999888754
No 64
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.93 E-value=3.1e-23 Score=258.35 Aligned_cols=427 Identities=19% Similarity=0.279 Sum_probs=257.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEecCccc--cccccchHHHHHHHHHHhhc-CCCEEEEEcc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLM--ASSERKTSAALAQAFNTAQS-YSPTILLLRD 464 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el----------g~~~~~I~~~~L~--~~~~g~~e~~L~~~f~~A~~-~~P~IL~IDE 464 (934)
.+++|+||||||||++++.+|..+ +.+++.++...+. ..+.|+.+..++.++..+.. ..++||||||
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDE 274 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDE 274 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 458999999999999999999986 5678888877765 35668888999999998864 3589999999
Q ss_pred hhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-----CCChh
Q 002337 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPT 539 (934)
Q Consensus 465 ID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~-----~Ld~a 539 (934)
+|.|.......+ ......+|..++ .++.+.+||+|+..+ .+|++
T Consensus 275 ih~l~~~g~~~~--------~~d~~~~Lk~~l-----------------------~~g~i~~IgaTt~~e~r~~~~~d~a 323 (852)
T TIGR03346 275 LHTLVGAGKAEG--------AMDAGNMLKPAL-----------------------ARGELHCIGATTLDEYRKYIEKDAA 323 (852)
T ss_pred HHHhhcCCCCcc--------hhHHHHHhchhh-----------------------hcCceEEEEeCcHHHHHHHhhcCHH
Confidence 999976321111 122333333322 267899999998764 47999
Q ss_pred hhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCC-----hHHHHHHHHHHHHHHHHhhcc
Q 002337 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFM-----PRDLHALVADAGANLIRKSNS 614 (934)
Q Consensus 540 LrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv-----~~DL~~L~~~A~~~ai~r~~~ 614 (934)
+.|||. .|.++.|+.+++..|++.+.+.....+.-.-.+..+...+..+++|. |..-..|+.+|+...--+...
T Consensus 324 l~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~ 402 (852)
T TIGR03346 324 LERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDS 402 (852)
T ss_pred HHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhccC
Confidence 999996 79999999999999999887665543321123556666777777654 444455666665432110000
Q ss_pred --------------------cccCCCCCc--h----------hhhhhhhccCcchhh-----------------------
Q 002337 615 --------------------EVDKNEPGE--S----------DLTAKVAHNDNSSIA----------------------- 639 (934)
Q Consensus 615 --------------------~~~~~~~~~--~----------~l~~~~~~~~~~~~~----------------------- 639 (934)
......... . .+..........+..
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (852)
T TIGR03346 403 KPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELE 482 (852)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 0 000000000000000
Q ss_pred -----------------------------------------hhhcCCHHHHHHHHHhhhcccccccCCCCCccchh----
Q 002337 640 -----------------------------------------ATQVMGKEDLVKAMERSKKRNASALGAPKLPLLHK---- 674 (934)
Q Consensus 640 -----------------------------------------~~~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~---- 674 (934)
....++.+|+...+... .|.|...+...
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~-------tgip~~~~~~~e~~~ 555 (852)
T TIGR03346 483 QAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRW-------TGIPVSKMLEGEREK 555 (852)
T ss_pred HHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHh-------cCCCcccccHHHHHH
Confidence 00012222222222111 11221100000
Q ss_pred ----------------H-------Hh---hcCCC----CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCcccc
Q 002337 675 ----------------D-------LF---SSGLR----KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELI 721 (934)
Q Consensus 675 ----------------~-------~~---~~~~~----~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~ 721 (934)
+ .+ ..++. |...+||+||+|||||++|+++|..+ +.+++.++++++.
T Consensus 556 l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~ 635 (852)
T TIGR03346 556 LLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYM 635 (852)
T ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhc
Confidence 0 01 11222 33468999999999999999999876 4689999987753
Q ss_pred cc------------ccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCc-----
Q 002337 722 NM------------YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN----- 784 (934)
Q Consensus 722 ~~------------~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~----- 784 (934)
.. |+|..+ ...+....+....+|||||||+.+.+ .+.+.||..||.-.
T Consensus 636 ~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka~~-------------~v~~~Ll~~l~~g~l~d~~ 700 (852)
T TIGR03346 636 EKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKAHP-------------DVFNVLLQVLDDGRLTDGQ 700 (852)
T ss_pred ccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccCCH-------------HHHHHHHHHHhcCceecCC
Confidence 32 233222 12344445556668999999998752 35555555554211
Q ss_pred ---CCCCCEEEEEEcCCCCC-------------------------CChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHh
Q 002337 785 ---DSSQDLFIIGASNRPDL-------------------------IDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTR 836 (934)
Q Consensus 785 ---~~~~~v~vI~aTNrp~~-------------------------lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~ 836 (934)
..-++.+||+|||.... +.|+|+. |+|..+.|. |++.+...+|+...+.
T Consensus 701 g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~-PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 701 GRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFH-PLGREQIARIVEIQLG 777 (852)
T ss_pred CeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecC-CcCHHHHHHHHHHHHH
Confidence 11256789999998321 3467776 999888888 6899999999876664
Q ss_pred cC-------CCCcCCC---HHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 002337 837 KF-------KLLEDVS---LYSIAKKC-PPNFTGADMYALCADAWFHAAKRKVLSS 881 (934)
Q Consensus 837 ~~-------~~~~~~~---l~~la~~~-t~g~sgaDl~~l~~~A~~~A~~r~~~~~ 881 (934)
.. .+...++ +..|++.. ...|..+.|++++++.....+-+.+...
T Consensus 778 ~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l~~ 833 (852)
T TIGR03346 778 RLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAG 833 (852)
T ss_pred HHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhC
Confidence 21 1222222 44566552 2246678999999998888877766543
No 65
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.93 E-value=3.3e-25 Score=275.82 Aligned_cols=207 Identities=16% Similarity=0.212 Sum_probs=157.6
Q ss_pred cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcccccc-----------------------------------
Q 002337 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASS----------------------------------- 437 (934)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~----------------------------------- 437 (934)
+..+++||||+||||||||.|||++|++.+++++.|+++++++++
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhc
Confidence 468889999999999999999999999999999999999988543
Q ss_pred ------ccch--HHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCC
Q 002337 438 ------ERKT--SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHG 509 (934)
Q Consensus 438 ------~g~~--e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g 509 (934)
.+.. ..+++.+|+.|+..+||||||||||+|+... .... .+..++..+...
T Consensus 1706 n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d--------s~~l--tL~qLLneLDg~----------- 1764 (2281)
T CHL00206 1706 NALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE--------SNYL--SLGLLVNSLSRD----------- 1764 (2281)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc--------ccee--hHHHHHHHhccc-----------
Confidence 1112 2348899999999999999999999998631 0000 122223322110
Q ss_pred CCchhhhhhhhcccEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHh
Q 002337 510 YFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIG 587 (934)
Q Consensus 510 ~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~ 587 (934)
.......+|+||||||+|+.||||++| ||++.|.++.|+..+|.+++..++... .++.+.. ..++..+|+
T Consensus 1765 ------~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tk-g~~L~~~-~vdl~~LA~ 1836 (2281)
T CHL00206 1765 ------CERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR-GFHLEKK-MFHTNGFGS 1836 (2281)
T ss_pred ------cccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhc-CCCCCcc-cccHHHHHH
Confidence 001125679999999999999999999 899999999999999999998764221 1121211 124788999
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhh
Q 002337 588 QTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERS 656 (934)
Q Consensus 588 ~t~Gfv~~DL~~L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~ 656 (934)
.|.||+|+||++||.+|+..++++. ...+..+++..|+.+.
T Consensus 1837 ~T~GfSGADLanLvNEAaliAirq~----------------------------ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1837 ITMGSNARDLVALTNEALSISITQK----------------------------KSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHcC----------------------------CCccCHHHHHHHHHHH
Confidence 9999999999999999999998753 2346778888888765
No 66
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.92 E-value=1.2e-22 Score=252.02 Aligned_cols=163 Identities=15% Similarity=0.246 Sum_probs=120.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEecCcccc--ccccchHHHHHHHHHHhh-cCCCEEEEEcc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMA--SSERKTSAALAQAFNTAQ-SYSPTILLLRD 464 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el----------g~~~~~I~~~~L~~--~~~g~~e~~L~~~f~~A~-~~~P~IL~IDE 464 (934)
.+++|+||||||||++++.+|..+ +.+++.++...+.. ++.|+.+..++.+|.... ...++||||||
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDE 279 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDE 279 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEec
Confidence 358999999999999999999998 67888888887763 466888999999998754 35689999999
Q ss_pred hhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-----CCChh
Q 002337 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPT 539 (934)
Q Consensus 465 ID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~-----~Ld~a 539 (934)
+|.|.......+ ......+|...+ .++.+.+||||+..+ .+|++
T Consensus 280 ih~l~~~~~~~~--------~~d~~~~lkp~l-----------------------~~g~l~~IgaTt~~e~r~~~~~d~a 328 (857)
T PRK10865 280 LHTMVGAGKADG--------AMDAGNMLKPAL-----------------------ARGELHCVGATTLDEYRQYIEKDAA 328 (857)
T ss_pred HHHhccCCCCcc--------chhHHHHhcchh-----------------------hcCCCeEEEcCCCHHHHHHhhhcHH
Confidence 999986432111 112333333322 267899999998876 38999
Q ss_pred hhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCC-chHHHHHHHhhcCCCC
Q 002337 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTG-SEEFVKDIIGQTSGFM 593 (934)
Q Consensus 540 LrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~-~~~~L~~la~~t~Gfv 593 (934)
++|||. .|.++.|+.+++..|++.+.+.....| ++. .+..+...+..+++|.
T Consensus 329 l~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~-~v~~~d~a~~~a~~ls~ry~ 381 (857)
T PRK10865 329 LERRFQ-KVFVAEPSVEDTIAILRGLKERYELHH-HVQITDPAIVAAATLSHRYI 381 (857)
T ss_pred HHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCC-CCCcCHHHHHHHHHHhhccc
Confidence 999997 789999999999999998876554322 222 2444455555555544
No 67
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.92 E-value=3.3e-24 Score=253.15 Aligned_cols=212 Identities=21% Similarity=0.259 Sum_probs=169.1
Q ss_pred HHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHH
Q 002337 374 DTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFN 450 (934)
Q Consensus 374 ~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~ 450 (934)
+..+.+.+++..+.+|..+ +..+++++||+||||||||++++++|++++.+++.++++++.+.+.+.++..++.+|+
T Consensus 62 ~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~ 141 (495)
T TIGR01241 62 EAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE 141 (495)
T ss_pred HHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHH
Confidence 5666777777766666544 4677889999999999999999999999999999999999988888889999999999
Q ss_pred HhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEec
Q 002337 451 TAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (934)
Q Consensus 451 ~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatT 530 (934)
.|+..+|+||||||+|.+...+.... .....+....+..++.. +++.....+++||+||
T Consensus 142 ~a~~~~p~Il~iDEid~l~~~r~~~~-----~~~~~~~~~~~~~lL~~----------------~d~~~~~~~v~vI~aT 200 (495)
T TIGR01241 142 QAKKNAPCIIFIDEIDAVGRQRGAGL-----GGGNDEREQTLNQLLVE----------------MDGFGTNTGVIVIAAT 200 (495)
T ss_pred HHHhcCCCEEEEechhhhhhccccCc-----CCccHHHHHHHHHHHhh----------------hccccCCCCeEEEEec
Confidence 99999999999999999987543211 01122233344444322 1112235679999999
Q ss_pred CCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 002337 531 DSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANL 608 (934)
Q Consensus 531 n~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~a 608 (934)
|+++.||++++| ||++.+.++.|+.++|.+|++.+++.... . .+..+..++..|.||+++|+..++++|+..+
T Consensus 201 n~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~----~~~~l~~la~~t~G~sgadl~~l~~eA~~~a 275 (495)
T TIGR01241 201 NRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-A----PDVDLKAVARRTPGFSGADLANLLNEAALLA 275 (495)
T ss_pred CChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-C----cchhHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 999999999998 89999999999999999999999875432 1 2345789999999999999999999998776
Q ss_pred HHh
Q 002337 609 IRK 611 (934)
Q Consensus 609 i~r 611 (934)
.++
T Consensus 276 ~~~ 278 (495)
T TIGR01241 276 ARK 278 (495)
T ss_pred HHc
Confidence 543
No 68
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.2e-25 Score=229.39 Aligned_cols=218 Identities=21% Similarity=0.293 Sum_probs=183.1
Q ss_pred CcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHH
Q 002337 368 FVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAA 444 (934)
Q Consensus 368 ~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~ 444 (934)
..++.+.+.+.+..++.|+.+|..+ ++++|.+++||||||+|||.+++++|..+|++++.+..+.+.+++.|++...
T Consensus 134 ~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRl 213 (388)
T KOG0651|consen 134 VGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARL 213 (388)
T ss_pred hCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHH
Confidence 3444445556666677899999877 5799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccE
Q 002337 445 LAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQV 524 (934)
Q Consensus 445 L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~V 524 (934)
+++.|..|+...|||+|+||||+++..+..++..++ .++...|-+++++ +++....++|
T Consensus 214 IRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~d-----reiqrTLMeLlnq----------------mdgfd~l~rV 272 (388)
T KOG0651|consen 214 IRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSD-----REIQRTLMELLNQ----------------MDGFDTLHRV 272 (388)
T ss_pred HHHHHHHHhhhCceEEeehhhhhhccEEeccccchh-----HHHHHHHHHHHHh----------------hccchhcccc
Confidence 999999999999999999999999987755554433 4667766666554 3334457889
Q ss_pred EEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHH
Q 002337 525 LLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVA 602 (934)
Q Consensus 525 iVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~ 602 (934)
-+|.|||+++.|+|+|.| |.++.+++|.|++..|..|++.+.+.... +..+ ..+.+.+..+||.++|++..|+
T Consensus 273 k~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~-~Gei----d~eaivK~~d~f~gad~rn~~t 347 (388)
T KOG0651|consen 273 KTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDF-HGEI----DDEAILKLVDGFNGADLRNVCT 347 (388)
T ss_pred cEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccc-cccc----cHHHHHHHHhccChHHHhhhcc
Confidence 999999999999999998 89999999999999999999998866543 2222 2578999999999999999999
Q ss_pred HHHHHHHHh
Q 002337 603 DAGANLIRK 611 (934)
Q Consensus 603 ~A~~~ai~r 611 (934)
+|.+-+++.
T Consensus 348 Eag~Fa~~~ 356 (388)
T KOG0651|consen 348 EAGMFAIPE 356 (388)
T ss_pred cccccccch
Confidence 998766543
No 69
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.91 E-value=7.3e-24 Score=241.10 Aligned_cols=237 Identities=21% Similarity=0.283 Sum_probs=183.4
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+.++++....+....+..|+.+|..+ +..++.++||+||||||||++++++|++++.+++.+.+.++...+.++..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~ 201 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGA 201 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHH
Confidence 345566654444444455777887654 46778999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|..+....|+||||||+|.+...+...... ...++...+.+++..+ ++.....
T Consensus 202 ~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~-----~~~~~~~~l~~ll~~l----------------d~~~~~~ 260 (364)
T TIGR01242 202 RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTS-----GDREVQRTLMQLLAEL----------------DGFDPRG 260 (364)
T ss_pred HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCC-----ccHHHHHHHHHHHHHh----------------hCCCCCC
Confidence 899999999998899999999999998654322211 1223333343333211 1111246
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
++.||+|||+++.+|+++++ ||++.+.++.|+.++|.+|++.++..... ..+. .+..++..|+||+++|+..+
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~----~~~~la~~t~g~sg~dl~~l 335 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDV----DLEAIAKMTEGASGADLKAI 335 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccC----CHHHHHHHcCCCCHHHHHHH
Confidence 79999999999999999987 89999999999999999999998866532 2222 36889999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhh
Q 002337 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERS 656 (934)
Q Consensus 601 ~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~ 656 (934)
|++|++.++++. ...++.+||..|++.+
T Consensus 336 ~~~A~~~a~~~~----------------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 336 CTEAGMFAIREE----------------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHHhC----------------------------CCccCHHHHHHHHHHh
Confidence 999999998752 2357788998888754
No 70
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.3e-24 Score=241.03 Aligned_cols=253 Identities=19% Similarity=0.279 Sum_probs=190.6
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCcccc--CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSA 443 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~~--~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~ 443 (934)
.++.++.....-..+..+.|.+.|..|. -.+.+++||.||||+|||+|+++||.|.++.|+.|+.++|.++|.|+++.
T Consensus 153 ~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 153 DDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEK 232 (428)
T ss_pred cCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHH
Confidence 4455554433334445578888888773 35568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhccc
Q 002337 444 ALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ 523 (934)
Q Consensus 444 ~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ 523 (934)
.++.+|..|+..+|+|+||||+|.+..++++.. +........+ .|.++..- ......+
T Consensus 233 ~vralf~vAr~~qPsvifidEidslls~Rs~~e-~e~srr~kte---fLiq~~~~------------------~s~~~dr 290 (428)
T KOG0740|consen 233 LVRALFKVARSLQPSVIFIDEIDSLLSKRSDNE-HESSRRLKTE---FLLQFDGK------------------NSAPDDR 290 (428)
T ss_pred HHHHHHHHHHhcCCeEEEechhHHHHhhcCCcc-cccchhhhhH---HHhhhccc------------------cCCCCCe
Confidence 999999999999999999999999998763221 1111111111 11121110 0122558
Q ss_pred EEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHH
Q 002337 524 VLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVAD 603 (934)
Q Consensus 524 ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~ 603 (934)
|+||||||.|+.+|.+++|||...+.+|.|+.+.|..+++.+++..+ +.-.+..++.+++.|+||++.|+.++|++
T Consensus 291 vlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~----~~l~~~d~~~l~~~Tegysgsdi~~l~ke 366 (428)
T KOG0740|consen 291 VLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQP----NGLSDLDISLLAKVTEGYSGSDITALCKE 366 (428)
T ss_pred EEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCC----CCccHHHHHHHHHHhcCcccccHHHHHHH
Confidence 99999999999999999999999999999999999999999997652 33346678999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhcc
Q 002337 604 AGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKR 659 (934)
Q Consensus 604 A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~~ 659 (934)
|++.-++........ . .......+.+...|+..+++..+..
T Consensus 367 a~~~p~r~~~~~~~~--------~-------~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 367 AAMGPLRELGGTTDL--------E-------FIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred hhcCchhhcccchhh--------h-------hcchhccCCCCcchHHHHHHhhccc
Confidence 987766543221000 0 0001124567778888888877654
No 71
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.9e-23 Score=246.51 Aligned_cols=420 Identities=20% Similarity=0.325 Sum_probs=270.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEecCcccc--ccccchHHHHHHHHHHhhcCCCEEEEEcchh
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMA--SSERKTSAALAQAFNTAQSYSPTILLLRDFD 466 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~el----------g~~~~~I~~~~L~~--~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID 466 (934)
+-+|+|+||+|||.++..+|.+. +..++.++...+.+ +|.|+.+.+++.+.++.....+.||||||+|
T Consensus 193 NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiH 272 (786)
T COG0542 193 NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIH 272 (786)
T ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 35999999999999999999987 45677888777765 6789999999999999998889999999999
Q ss_pred hccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCC-----CChhhh
Q 002337 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG-----LPPTIR 541 (934)
Q Consensus 467 ~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~-----Ld~aLr 541 (934)
.|......+| + ..+...+|+-.+. ++.+-+||||+.-+. -|++|-
T Consensus 273 tiVGAG~~~G------~-a~DAaNiLKPaLA-----------------------RGeL~~IGATT~~EYRk~iEKD~AL~ 322 (786)
T COG0542 273 TIVGAGATEG------G-AMDAANLLKPALA-----------------------RGELRCIGATTLDEYRKYIEKDAALE 322 (786)
T ss_pred hhcCCCcccc------c-ccchhhhhHHHHh-----------------------cCCeEEEEeccHHHHHHHhhhchHHH
Confidence 9987432222 1 1233445554432 777889999975432 589999
Q ss_pred cccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC-----CChHHHHHHHHHHHHHHHHhhcc--
Q 002337 542 RCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG-----FMPRDLHALVADAGANLIRKSNS-- 614 (934)
Q Consensus 542 rrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G-----fv~~DL~~L~~~A~~~ai~r~~~-- 614 (934)
|||. .+.+..|+.++-..||+-+-......|.-.-.+..+...+..++. |.|.--..|+.+|+.........
T Consensus 323 RRFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~~p~ 401 (786)
T COG0542 323 RRFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEIDKPE 401 (786)
T ss_pred hcCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhcccCCc
Confidence 9996 999999999999999998876655544212234555555555554 44444455666665443211000
Q ss_pred ----------c-------ccCCC--CCch---------------------------hhhhhhh-----------ccC---
Q 002337 615 ----------E-------VDKNE--PGES---------------------------DLTAKVA-----------HND--- 634 (934)
Q Consensus 615 ----------~-------~~~~~--~~~~---------------------------~l~~~~~-----------~~~--- 634 (934)
+ ..... .... .+...+. +..
T Consensus 402 ~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv~~~TgIPv~~l~~~e~~k 481 (786)
T COG0542 402 ELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDEDDIAEVVARWTGIPVAKLLEDEKEK 481 (786)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhhccCHHHHHHHHHHHHCCChhhhchhhHHH
Confidence 0 00000 0000 0000000 000
Q ss_pred ---cchhhhhhcCCHHHHHHHHHhhhcccccccCCCCCccchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHcC--
Q 002337 635 ---NSSIAATQVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS-- 709 (934)
Q Consensus 635 ---~~~~~~~~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~~-- 709 (934)
-......+++++++...++.+..++....+..|+ +|-..+||.||+|+|||.+||++|..+.
T Consensus 482 ll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~-------------rPigsFlF~GPTGVGKTELAkaLA~~Lfg~ 548 (786)
T COG0542 482 LLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPN-------------RPIGSFLFLGPTGVGKTELAKALAEALFGD 548 (786)
T ss_pred HHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCC-------------CCceEEEeeCCCcccHHHHHHHHHHHhcCC
Confidence 0001112333333333333333322222332222 3345788999999999999999999986
Q ss_pred -CcEEEecCcccccc------------ccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhh
Q 002337 710 -LNFLSVKGPELINM------------YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQM 776 (934)
Q Consensus 710 -~~~i~v~~~~l~~~------------~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~l 776 (934)
-+++.++++++..+ |+|-.+.. .+-+..|....|||+||||++-.| .|++-|
T Consensus 549 e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG--~LTEaVRr~PySViLlDEIEKAHp-------------dV~nil 613 (786)
T COG0542 549 EQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGG--QLTEAVRRKPYSVILLDEIEKAHP-------------DVFNLL 613 (786)
T ss_pred CccceeechHHHHHHHHHHHHhCCCCCCceecccc--chhHhhhcCCCeEEEechhhhcCH-------------HHHHHH
Confidence 78999999998653 77765533 455666777789999999998864 478888
Q ss_pred hhhccCCc--C------CCCCEEEEEEcCCCC----------------------------CCChhhhCCCCcceeeeecC
Q 002337 777 LAEIDGLN--D------SSQDLFIIGASNRPD----------------------------LIDPALLRPGRFDKLLYVGV 820 (934)
Q Consensus 777 L~~ldg~~--~------~~~~v~vI~aTNrp~----------------------------~lD~allrpGRfd~~i~v~~ 820 (934)
|.-||.-. + .-++.+||.|||--. .+-|+++. |+|..|.|.
T Consensus 614 LQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~- 690 (786)
T COG0542 614 LQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFN- 690 (786)
T ss_pred HHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEecc-
Confidence 88887422 1 124689999998531 23467777 999999998
Q ss_pred CCCHHHHHHHHHHHHhcC-------CCCcCCC---HHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002337 821 NSDVSYRERVLKALTRKF-------KLLEDVS---LYSIAKKCP-PNFTGADMYALCADAWFHAAKRKVLS 880 (934)
Q Consensus 821 Pp~~~~r~~Il~~~~~~~-------~~~~~~~---l~~la~~~t-~g~sgaDl~~l~~~A~~~A~~r~~~~ 880 (934)
|-+.+...+|...++... .+.-.++ ...+++++. ..|-++-|+.++++-....+-+.+..
T Consensus 691 ~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~ 761 (786)
T COG0542 691 PLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILF 761 (786)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHHh
Confidence 588899999987776543 1111111 345666542 34556677777777666665555543
No 72
>CHL00176 ftsH cell division protein; Validated
Probab=99.91 E-value=1.4e-23 Score=250.97 Aligned_cols=219 Identities=18% Similarity=0.252 Sum_probs=174.6
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+..+.+ +..+.+.+++..+.++..+ +...+.++||+||||||||++|+++|++++.+++.++|+++...+.+...
T Consensus 183 ~dv~G~~-~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~ 261 (638)
T CHL00176 183 RDIAGIE-EAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGA 261 (638)
T ss_pred HhccChH-HHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhH
Confidence 3444544 5667888888777777664 46778899999999999999999999999999999999998887778788
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|..|...+||||||||+|.+...++... .+...+....+..++..+ ++.....
T Consensus 262 ~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~-----~~~~~e~~~~L~~LL~~~----------------dg~~~~~ 320 (638)
T CHL00176 262 ARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGI-----GGGNDEREQTLNQLLTEM----------------DGFKGNK 320 (638)
T ss_pred HHHHHHHHHHhcCCCcEEEEecchhhhhcccCCC-----CCCcHHHHHHHHHHHhhh----------------ccccCCC
Confidence 8999999999999999999999999987542211 111233344455554321 1122356
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
+++||++||+++.+|++++| ||++.+.++.|+.++|.+|++.++++.. ...+..+..+|..|.||+++||..+
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-----~~~d~~l~~lA~~t~G~sgaDL~~l 395 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-----LSPDVSLELIARRTPGFSGADLANL 395 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-----cchhHHHHHHHhcCCCCCHHHHHHH
Confidence 79999999999999999998 7999999999999999999999987632 2235567899999999999999999
Q ss_pred HHHHHHHHHHh
Q 002337 601 VADAGANLIRK 611 (934)
Q Consensus 601 ~~~A~~~ai~r 611 (934)
+++|+..+.++
T Consensus 396 vneAal~a~r~ 406 (638)
T CHL00176 396 LNEAAILTARR 406 (638)
T ss_pred HHHHHHHHHHh
Confidence 99998777654
No 73
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.90 E-value=4.2e-23 Score=225.33 Aligned_cols=199 Identities=15% Similarity=0.201 Sum_probs=151.0
Q ss_pred cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhc-----CCCEEEEEcchhh
Q 002337 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQS-----YSPTILLLRDFDV 467 (934)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~-----~~P~IL~IDEID~ 467 (934)
+++++.+++||||||||||++++++|+++|++++.+++++|.+++.|++++.+++.|..|.. .+||||||||||+
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDA 223 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhh
Confidence 46899999999999999999999999999999999999999999999999999999999975 4699999999999
Q ss_pred ccccccCCCCCCccccchHHH-HHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhc--cc
Q 002337 468 FRNLVSNESLPNDQVGLSSEV-ASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR--CF 544 (934)
Q Consensus 468 L~~~~~~~~~~~d~~~~~~ev-~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrr--rF 544 (934)
+++.+.. .+.....++ ...|-.+++.... ....|.+- ......+|+||+|||+++.||++++| ||
T Consensus 224 ~~g~r~~-----~~~tv~~qiV~~tLLnl~D~p~~---v~l~G~w~----~~~~~~~V~VIaTTNrpd~LDpALlRpGRf 291 (413)
T PLN00020 224 GAGRFGT-----TQYTVNNQMVNGTLMNIADNPTN---VSLGGDWR----EKEEIPRVPIIVTGNDFSTLYAPLIRDGRM 291 (413)
T ss_pred cCCCCCC-----CCcchHHHHHHHHHHHHhcCCcc---cccccccc----ccccCCCceEEEeCCCcccCCHhHcCCCCC
Confidence 9986531 111222222 2233233321100 00111110 01235679999999999999999999 99
Q ss_pred ceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC----CChHHHHHHHHHHHHHHHHh
Q 002337 545 SHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG----FMPRDLHALVADAGANLIRK 611 (934)
Q Consensus 545 ~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G----fv~~DL~~L~~~A~~~ai~r 611 (934)
++.+ +.|+.++|.+|++.+++... ++ ...+..++..++| |.|+=+..+..++..+.+.+
T Consensus 292 Dk~i--~lPd~e~R~eIL~~~~r~~~-----l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 292 EKFY--WAPTREDRIGVVHGIFRDDG-----VS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE 354 (413)
T ss_pred Ccee--CCCCHHHHHHHHHHHhccCC-----CC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 9865 58999999999999997642 22 4667889999888 78887777777776666544
No 74
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.90 E-value=9.8e-23 Score=236.26 Aligned_cols=212 Identities=20% Similarity=0.283 Sum_probs=159.9
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------EEEEecCc
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH----------VVEYSCHN 432 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~----------~~~I~~~~ 432 (934)
.+++++...+.+....++.|+++|..+ ++.+++++|||||||||||++++++|++++.+ ++.+.+++
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 456677776666667778899998766 47888999999999999999999999998654 55677778
Q ss_pred cccccccchHHHHHHHHHHhhcC----CCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccC
Q 002337 433 LMASSERKTSAALAQAFNTAQSY----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESH 508 (934)
Q Consensus 433 L~~~~~g~~e~~L~~~f~~A~~~----~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~ 508 (934)
+.+++.++++..++.+|+.|+.. .|+|+||||+|.+...+.... .++ ....+ +.+++..
T Consensus 262 Ll~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-s~d---~e~~i---l~~LL~~---------- 324 (512)
T TIGR03689 262 LLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-SSD---VETTV---VPQLLSE---------- 324 (512)
T ss_pred hcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-cch---HHHHH---HHHHHHH----------
Confidence 88899999999999999988753 699999999999987543211 111 11122 2222221
Q ss_pred CCCchhhhhhhhcccEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHH
Q 002337 509 GYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDII 586 (934)
Q Consensus 509 g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la 586 (934)
+++.....+++||+|||+++.||++++| ||++.|.++.|+.++|.+|++.++..... . ...+
T Consensus 325 ------LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~------l----~~~l 388 (512)
T TIGR03689 325 ------LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLP------L----DADL 388 (512)
T ss_pred ------hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCC------c----hHHH
Confidence 1112224679999999999999999998 99999999999999999999998854211 1 1123
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHH
Q 002337 587 GQTSGFMPRDLHALVADAGANLIR 610 (934)
Q Consensus 587 ~~t~Gfv~~DL~~L~~~A~~~ai~ 610 (934)
..+.|+.++|+..+++++....+.
T Consensus 389 ~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 389 AEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhh
Confidence 446889999999998888666554
No 75
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.89 E-value=2.6e-22 Score=242.62 Aligned_cols=212 Identities=19% Similarity=0.245 Sum_probs=167.5
Q ss_pred HHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHH
Q 002337 374 DTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFN 450 (934)
Q Consensus 374 ~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~ 450 (934)
...+.+.+++.....+..+ +...+.+|+|+||||||||++++++|++++.+++.+++.++...+.+.....++..|.
T Consensus 159 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~ 238 (644)
T PRK10733 159 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFE 238 (644)
T ss_pred HHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHH
Confidence 4556666666555444333 3466788999999999999999999999999999999999888888888899999999
Q ss_pred HhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEec
Q 002337 451 TAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (934)
Q Consensus 451 ~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatT 530 (934)
.|...+|||+||||+|.++..+.... .+...+....+++++.. +++......++|||||
T Consensus 239 ~a~~~~P~IifIDEiD~l~~~r~~~~-----~g~~~~~~~~ln~lL~~----------------mdg~~~~~~vivIaaT 297 (644)
T PRK10733 239 QAKKAAPCIIFIDEIDAVGRQRGAGL-----GGGHDEREQTLNQMLVE----------------MDGFEGNEGIIVIAAT 297 (644)
T ss_pred HHHhcCCcEEEehhHhhhhhccCCCC-----CCCchHHHHHHHHHHHh----------------hhcccCCCCeeEEEec
Confidence 99999999999999999987553211 11122333444444322 1222335679999999
Q ss_pred CCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 002337 531 DSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANL 608 (934)
Q Consensus 531 n~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~a 608 (934)
|+++.||++++| ||++.+.++.|+.++|.+|++.+++..+. ..+. .+..++..|.||+++|+.++|++|+..+
T Consensus 298 N~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l-~~~~----d~~~la~~t~G~sgadl~~l~~eAa~~a 372 (644)
T PRK10733 298 NRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-APDI----DAAIIARGTPGFSGADLANLVNEAALFA 372 (644)
T ss_pred CChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCC-CCcC----CHHHHHhhCCCCCHHHHHHHHHHHHHHH
Confidence 999999999998 89999999999999999999999977543 3333 3577999999999999999999999888
Q ss_pred HHh
Q 002337 609 IRK 611 (934)
Q Consensus 609 i~r 611 (934)
.++
T Consensus 373 ~r~ 375 (644)
T PRK10733 373 ARG 375 (644)
T ss_pred HHc
Confidence 754
No 76
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=1.2e-21 Score=189.29 Aligned_cols=131 Identities=43% Similarity=0.789 Sum_probs=119.8
Q ss_pred ceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCC-CcEEEeccccccccCCCCCCCC
Q 002337 687 VLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSAR-PCVIFFDELDSLAPARGASGDS 765 (934)
Q Consensus 687 iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~-p~vlfiDEid~l~~~r~~~~~~ 765 (934)
|||+||||||||++|+++|+.++.+++.++++++.+.+.+++++.++++|++++... ||||||||+|.+.++. ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~--~~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS--QPSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC--STSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc--cccc
Confidence 689999999999999999999999999999999999999999999999999999887 9999999999999887 2334
Q ss_pred chhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecC
Q 002337 766 GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGV 820 (934)
Q Consensus 766 ~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~ 820 (934)
.....+++++|+..++.......+++||++||+++.+|++++| |||+..|++++
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 5567889999999999987655789999999999999999998 99999999974
No 77
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=9.6e-20 Score=192.55 Aligned_cols=205 Identities=28% Similarity=0.392 Sum_probs=154.3
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcC---------CcEEEecCccccccccchhhhhhHHHHHHHHhC---CCc--EEE
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECS---------LNFLSVKGPELINMYIGESEKNVRDIFQKARSA---RPC--VIF 748 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~---------~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~---~p~--vlf 748 (934)
..+-+|++||||||||+|+||+|+.+. ..++.+++..|+++|++|+.+.+..+|++.... ..+ .++
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 356789999999999999999999873 358999999999999999999999999987642 223 456
Q ss_pred eccccccccCCCCC--CCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHH
Q 002337 749 FDELDSLAPARGAS--GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSY 826 (934)
Q Consensus 749 iDEid~l~~~r~~~--~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~ 826 (934)
|||+++|+..|.+. +.+..-.-|++|.+|++||.++. ..+|++++|+|-.+.||.|+.- |-|-..|++ ||..+.
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~-~~NvliL~TSNl~~siD~AfVD--RADi~~yVG-~Pt~~a 331 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR-YPNVLILATSNLTDSIDVAFVD--RADIVFYVG-PPTAEA 331 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc-CCCEEEEeccchHHHHHHHhhh--HhhheeecC-CccHHH
Confidence 89999999988432 22222235899999999999975 5789999999999999999999 999999999 589999
Q ss_pred HHHHHHHHHhcCC---C----------C-----cCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 002337 827 RERVLKALTRKFK---L----------L-----EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSS 888 (934)
Q Consensus 827 r~~Il~~~~~~~~---~----------~-----~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~ 888 (934)
+.+|++.++..+- + . .+.....+++..+.|.+|+-|+.|=--| ....
T Consensus 332 i~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~La----ha~y----------- 396 (423)
T KOG0744|consen 332 IYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLA----HAEY----------- 396 (423)
T ss_pred HHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHH----HHhc-----------
Confidence 9999988876431 1 0 1111223333335788887777663222 1111
Q ss_pred cccccCcccccHHHHHHHHHhh
Q 002337 889 RIDQADSVVVEYDDFVKVLREL 910 (934)
Q Consensus 889 ~~~~~~~~~it~~df~~al~~~ 910 (934)
.....|+.++|..|+...
T Consensus 397 ----~~~~~v~~~~fl~al~ea 414 (423)
T KOG0744|consen 397 ----FRTFTVDLSNFLLALLEA 414 (423)
T ss_pred ----cCCCccChHHHHHHHHHH
Confidence 122468889999888643
No 78
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=8.6e-19 Score=189.57 Aligned_cols=177 Identities=25% Similarity=0.428 Sum_probs=142.8
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCC-cEEEeccccccccCCCC
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARP-CVIFFDELDSLAPARGA 761 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p-~vlfiDEid~l~~~r~~ 761 (934)
+-++||||||||||||++|+-+|...|+.+-...|.|+. ..-.+.-..+.++|++|+.... -+|||||+|.+..+|..
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk 461 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK 461 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch
Confidence 457999999999999999999999999999888888763 3334556789999999987544 58899999999999875
Q ss_pred CCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCC
Q 002337 762 SGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL 841 (934)
Q Consensus 762 ~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~ 841 (934)
... ++..+..+|.||-.-. +.+++++++.|||+|..+|.|+-- |+|..|+||+ |..++|..+|..++.++-..
T Consensus 462 tym-SEaqRsaLNAlLfRTG---dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpL-PGeEERfkll~lYlnkyi~~ 534 (630)
T KOG0742|consen 462 TYM-SEAQRSALNALLFRTG---DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPL-PGEEERFKLLNLYLNKYILK 534 (630)
T ss_pred hhh-cHHHHHHHHHHHHHhc---ccccceEEEeccCCccchhHHHHh--hhhheeecCC-CChHHHHHHHHHHHHHHhcC
Confidence 443 3456778888886533 235789999999999999999998 9999999999 88999999998888764210
Q ss_pred ------------------------c---CCCHHHHHhhCCCCCCHHHHHHHHHH
Q 002337 842 ------------------------E---DVSLYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 842 ------------------------~---~~~l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
. +--+.+.|+. |+||||.+|..|+-.
T Consensus 535 ~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkk-TeGfSGREiakLva~ 587 (630)
T KOG0742|consen 535 PATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKK-TEGFSGREIAKLVAS 587 (630)
T ss_pred cCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHh-ccCCcHHHHHHHHHH
Confidence 0 0114567788 799999999999853
No 79
>CHL00181 cbbX CbbX; Provisional
Probab=99.76 E-value=6.8e-18 Score=185.20 Aligned_cols=204 Identities=23% Similarity=0.303 Sum_probs=149.0
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc-------CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC-------SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLA 756 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~-------~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~ 756 (934)
+.+++|+||||||||++|+++|..+ ..+++.++++++.+.|+|+++..++.+|++|. ++||||||+|.+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~ 135 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLY 135 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhc
Confidence 4568999999999999999998875 23699999999999999999888888888874 4699999999997
Q ss_pred cCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC-----CCChhhhCCCCcceeeeecCCCCHHHHHHHH
Q 002337 757 PARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNSDVSYRERVL 831 (934)
Q Consensus 757 ~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~-----~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il 831 (934)
..++. ..+...++..|+..|+.. ..+++||+|++... .++|++++ ||+..|+|+ |++.+++.+|+
T Consensus 136 ~~~~~----~~~~~e~~~~L~~~me~~---~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~-~~t~~el~~I~ 205 (287)
T CHL00181 136 KPDNE----RDYGSEAIEILLQVMENQ---RDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFP-DYTPEELLQIA 205 (287)
T ss_pred cCCCc----cchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcC-CcCHHHHHHHH
Confidence 54321 224467889999988854 35688888886432 34699999 999999999 58999999999
Q ss_pred HHHHhcCC--CCcCCC---HHHHHhhC-CCCCC-HHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHH
Q 002337 832 KALTRKFK--LLEDVS---LYSIAKKC-PPNFT-GADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFV 904 (934)
Q Consensus 832 ~~~~~~~~--~~~~~~---l~~la~~~-t~g~s-gaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~ 904 (934)
+.++++.. +.++.. +..+.+.. .+.|. |+++++++..|...-..|....... .....+...|+.+|+.
T Consensus 206 ~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~~~~-----~~~~~~l~~~~~~d~~ 280 (287)
T CHL00181 206 KIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFESGGR-----VLTKADLVTIEAEDIL 280 (287)
T ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCC-----CCCHHHHhCCCHHHHh
Confidence 99998654 332221 12222221 24455 8999999999998888887654211 1111233456666665
Q ss_pred H
Q 002337 905 K 905 (934)
Q Consensus 905 ~ 905 (934)
+
T Consensus 281 ~ 281 (287)
T CHL00181 281 K 281 (287)
T ss_pred H
Confidence 4
No 80
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.76 E-value=1.6e-17 Score=180.51 Aligned_cols=183 Identities=18% Similarity=0.261 Sum_probs=137.6
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc-------CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC-------SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLA 756 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~-------~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~ 756 (934)
..+++|+||||||||++|+++|+.+ ..+++.++++++.+.|+|+++..++++|++|. ++||||||+|.|.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~ 118 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLA 118 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhc
Confidence 4578999999999999999999864 34789999999999999999999999998874 4699999999997
Q ss_pred cCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC-----CCChhhhCCCCcceeeeecCCCCHHHHHHHH
Q 002337 757 PARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNSDVSYRERVL 831 (934)
Q Consensus 757 ~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~-----~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il 831 (934)
... ........++.|+..|+.. ..++++|++++..+ .++|++.+ ||+..|.++ |++.+++.+|+
T Consensus 119 ~~~-----~~~~~~~~i~~Ll~~~e~~---~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~-~~~~~el~~Il 187 (261)
T TIGR02881 119 RGG-----EKDFGKEAIDTLVKGMEDN---RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFP-DYTVEELMEIA 187 (261)
T ss_pred cCC-----ccchHHHHHHHHHHHHhcc---CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEEC-CCCHHHHHHHH
Confidence 321 1123356788899888864 34566666654322 36889999 999999999 58999999999
Q ss_pred HHHHhcCCCCcCCC-HHHHHhh-------C-CCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002337 832 KALTRKFKLLEDVS-LYSIAKK-------C-PPNFTGADMYALCADAWFHAAKRKVLS 880 (934)
Q Consensus 832 ~~~~~~~~~~~~~~-l~~la~~-------~-t~g~sgaDl~~l~~~A~~~A~~r~~~~ 880 (934)
+.+++.....-+.+ +..++.. . ...-+|+.+.+++..|....+.|.+..
T Consensus 188 ~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 188 ERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDK 245 (261)
T ss_pred HHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 99988654322222 3333221 1 123468899999999888887776644
No 81
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.75 E-value=1.4e-17 Score=182.86 Aligned_cols=206 Identities=19% Similarity=0.233 Sum_probs=150.1
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcC-------CcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEecccccc
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECS-------LNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSL 755 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~-------~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l 755 (934)
++.+++|+||||||||++|+++|..+. .+|+.++++++.+.|+|+++.+++.+|++|. ++||||||++.+
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L 133 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYL 133 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc---CcEEEEechhhh
Confidence 355899999999999999999988762 3799999999999999999999999999874 369999999999
Q ss_pred ccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCC--C---CCChhhhCCCCcceeeeecCCCCHHHHHHH
Q 002337 756 APARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP--D---LIDPALLRPGRFDKLLYVGVNSDVSYRERV 830 (934)
Q Consensus 756 ~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp--~---~lD~allrpGRfd~~i~v~~Pp~~~~r~~I 830 (934)
.+.+. ...+...+++.|+..|+.. ..+++||+|++.. + .++|++.+ ||+..|+||. ++.+++..|
T Consensus 134 ~~~~~----~~~~~~~~~~~Ll~~le~~---~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~-l~~edl~~I 203 (284)
T TIGR02880 134 YRPDN----ERDYGQEAIEILLQVMENQ---RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPD-YSEAELLVI 203 (284)
T ss_pred ccCCC----ccchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCC-cCHHHHHHH
Confidence 75432 2234567888999998854 3578888887643 3 35899999 9999999994 889999999
Q ss_pred HHHHHhcCCCCcCCC-HHHHHhh----CC-CC-CCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHH
Q 002337 831 LKALTRKFKLLEDVS-LYSIAKK----CP-PN-FTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDF 903 (934)
Q Consensus 831 l~~~~~~~~~~~~~~-l~~la~~----~t-~g-~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df 903 (934)
++.++++....-+.+ +..++.. +. +. -+++++++++..|......|....... .....+...|+.+|+
T Consensus 204 ~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~~~~~-----~~~~~~~~~~~~~d~ 278 (284)
T TIGR02880 204 AGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRLFCDLDR-----VLDKSDLETIDPEDL 278 (284)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhcCcCC-----CCCHHHHhCCCHHHH
Confidence 999998864322212 2222222 11 22 357999999999988887776543211 111123345777777
Q ss_pred HHH
Q 002337 904 VKV 906 (934)
Q Consensus 904 ~~a 906 (934)
.++
T Consensus 279 ~~~ 281 (284)
T TIGR02880 279 LAS 281 (284)
T ss_pred hhc
Confidence 554
No 82
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=9.8e-18 Score=186.46 Aligned_cols=193 Identities=24% Similarity=0.368 Sum_probs=133.4
Q ss_pred HHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEecccc
Q 002337 675 DLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELD 753 (934)
Q Consensus 675 ~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid 753 (934)
+.+. .|....+|.|||||||||||+++.|+|+.++..+.-+.-++.. ..++ ++.++..+... +||+|.+||
T Consensus 225 ~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~----~n~d--Lr~LL~~t~~k--SIivIEDID 296 (457)
T KOG0743|consen 225 DFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK----LDSD--LRHLLLATPNK--SILLIEDID 296 (457)
T ss_pred hHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc----CcHH--HHHHHHhCCCC--cEEEEeecc
Confidence 3454 3777789999999999999999999999999998877755442 1222 88887766544 699999999
Q ss_pred ccccCCCCCCC-----CchhHHHHHHhhhhhccCCcCCC-CCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHH
Q 002337 754 SLAPARGASGD-----SGGVMDRVVSQMLAEIDGLNDSS-QDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYR 827 (934)
Q Consensus 754 ~l~~~r~~~~~-----~~~~~~~v~~~lL~~ldg~~~~~-~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r 827 (934)
.-+.-|+.... .+....-.++.||+.+||+..+. +--+||.|||+++.|||||+||||+|.+||++. ...++-
T Consensus 297 cs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgy-Ctf~~f 375 (457)
T KOG0743|consen 297 CSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGY-CTFEAF 375 (457)
T ss_pred cccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCC-CCHHHH
Confidence 87764432222 11112346899999999997643 246777899999999999999999999999998 666666
Q ss_pred HHHHHHHHhcCCCCcCCCHHHHHhhC-CCCCCHHHHHHHH-HH--HHHHHHHHHh
Q 002337 828 ERVLKALTRKFKLLEDVSLYSIAKKC-PPNFTGADMYALC-AD--AWFHAAKRKV 878 (934)
Q Consensus 828 ~~Il~~~~~~~~~~~~~~l~~la~~~-t~g~sgaDl~~l~-~~--A~~~A~~r~~ 878 (934)
..+.+.++.--. +..-+.++.+.. ....|.||+.... .. .+..|+++.+
T Consensus 376 K~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv 428 (457)
T KOG0743|consen 376 KTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLV 428 (457)
T ss_pred HHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHH
Confidence 666665554321 122234444321 1245899987553 21 3344444443
No 83
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.73 E-value=2.1e-17 Score=159.51 Aligned_cols=129 Identities=21% Similarity=0.411 Sum_probs=104.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCC-CEEEEEcchhhccccccCCCCC
Q 002337 400 VLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYS-PTILLLRDFDVFRNLVSNESLP 478 (934)
Q Consensus 400 VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~-P~IL~IDEID~L~~~~~~~~~~ 478 (934)
|||+||||||||++++.+|+.++.+++.+++.++.+.+.+.....++.+|..+.... |+|++|||+|.+.+.. ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~--- 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QP--- 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-ST---
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-cc---
Confidence 699999999999999999999999999999999998888999999999999998887 9999999999998844 11
Q ss_pred CccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhh-cccceEEEcC
Q 002337 479 NDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIR-RCFSHEISMG 551 (934)
Q Consensus 479 ~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLr-rrF~~eI~i~ 551 (934)
........+.+.|...++.. .....++++|++||.++.+++.++ +||++.+.+|
T Consensus 77 -~~~~~~~~~~~~L~~~l~~~------------------~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 77 -SSSSFEQRLLNQLLSLLDNP------------------SSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp -SSSHHHHHHHHHHHHHHHTT------------------TTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred -ccccccccccceeeeccccc------------------ccccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 11122334444444443321 111467999999999999999999 9999999887
No 84
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=9.1e-16 Score=166.38 Aligned_cols=211 Identities=17% Similarity=0.207 Sum_probs=149.3
Q ss_pred chHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHH
Q 002337 372 QGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNT 451 (934)
Q Consensus 372 ~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~ 451 (934)
.....+.+..+....-+-.. .-.+=++||+|||||||||+++|-+|...|+++....+.++.- ...+....+.++|+.
T Consensus 360 ~psLe~Rie~lA~aTaNTK~-h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qaVTkiH~lFDW 437 (630)
T KOG0742|consen 360 HPSLEKRIEDLAIATANTKK-HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQAVTKIHKLFDW 437 (630)
T ss_pred CHHHHHHHHHHHHHhccccc-ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHHHHHHHHHHHH
Confidence 33555666665433322111 1133378999999999999999999999999998888876543 224456789999999
Q ss_pred hhc-CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEec
Q 002337 452 AQS-YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (934)
Q Consensus 452 A~~-~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatT 530 (934)
|+. ..+.++||||.|++...+.... +....-+.|+.++-. .+. ....++++.+|
T Consensus 438 akkS~rGLllFIDEADAFLceRnkty-------mSEaqRsaLNAlLfR-----------------TGd-qSrdivLvlAt 492 (630)
T KOG0742|consen 438 AKKSRRGLLLFIDEADAFLCERNKTY-------MSEAQRSALNALLFR-----------------TGD-QSRDIVLVLAT 492 (630)
T ss_pred HhhcccceEEEehhhHHHHHHhchhh-------hcHHHHHHHHHHHHH-----------------hcc-cccceEEEecc
Confidence 985 4678999999999987653322 222233344443211 011 14568888999
Q ss_pred CCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhcccccccc----------------------CCCCchHHHHHHHhh
Q 002337 531 DSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELT----------------------SDTGSEEFVKDIIGQ 588 (934)
Q Consensus 531 n~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~----------------------~d~~~~~~L~~la~~ 588 (934)
|+|.++|.++-.|++..++||.|.+++|..||..++.+.-... ...+.+..+.+.|+.
T Consensus 493 NrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkk 572 (630)
T KOG0742|consen 493 NRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKK 572 (630)
T ss_pred CCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHh
Confidence 9999999999999999999999999999999998875431110 011235567889999
Q ss_pred cCCCChHHHHHHHHHHHHHHH
Q 002337 589 TSGFMPRDLHALVADAGANLI 609 (934)
Q Consensus 589 t~Gfv~~DL~~L~~~A~~~ai 609 (934)
|.||+|+.|..|+......++
T Consensus 573 TeGfSGREiakLva~vQAavY 593 (630)
T KOG0742|consen 573 TEGFSGREIAKLVASVQAAVY 593 (630)
T ss_pred ccCCcHHHHHHHHHHHHHHHh
Confidence 999999999999865443443
No 85
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.66 E-value=7.4e-16 Score=189.94 Aligned_cols=223 Identities=22% Similarity=0.367 Sum_probs=157.3
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHc----------CCcEEEecCcccc--ccccchhhhhhHHHHHHHHhCCCcEEEe
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELI--NMYIGESEKNVRDIFQKARSARPCVIFF 749 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~--~~~~Gese~~v~~lf~~A~~~~p~vlfi 749 (934)
+...+++|+||||||||++++++|..+ +..+++++...+. .+|.|+.++.++.+|+.++...|+||||
T Consensus 201 ~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfi 280 (731)
T TIGR02639 201 RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFI 280 (731)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEE
Confidence 346799999999999999999999987 7789999988887 5799999999999999998888999999
Q ss_pred ccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC-----CCChhhhCCCCcceeeeecCCCCH
Q 002337 750 DELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNSDV 824 (934)
Q Consensus 750 DEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~-----~lD~allrpGRfd~~i~v~~Pp~~ 824 (934)
||+|.+.+.+..++.+.. +.+.|...|. .+.+.+|||||..+ .+|+|+.| ||. .|+++. |+.
T Consensus 281 DEih~l~~~g~~~~~~~~----~~~~L~~~l~-----~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~-p~~ 347 (731)
T TIGR02639 281 DEIHTIVGAGATSGGSMD----ASNLLKPALS-----SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGE-PSI 347 (731)
T ss_pred ecHHHHhccCCCCCccHH----HHHHHHHHHh-----CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCC-CCH
Confidence 999999876543221111 2222333322 35799999999743 57999999 997 689995 899
Q ss_pred HHHHHHHHHHHhcCCCC-----cCCCHHHHHhhCCCCCCHHH-----HHHHHHHHHHHHHHHHhcccCCCCCCccccccC
Q 002337 825 SYRERVLKALTRKFKLL-----EDVSLYSIAKKCPPNFTGAD-----MYALCADAWFHAAKRKVLSSDSNSDSSRIDQAD 894 (934)
Q Consensus 825 ~~r~~Il~~~~~~~~~~-----~~~~l~~la~~~t~g~sgaD-----l~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~ 894 (934)
+++..||+.+..++... .+..+..++.. +..|-+.. --.|+.+|+..+. +... ...
T Consensus 348 ~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~l-s~ryi~~r~~P~kai~lld~a~a~~~---~~~~----------~~~ 413 (731)
T TIGR02639 348 EETVKILKGLKEKYEEFHHVKYSDEALEAAVEL-SARYINDRFLPDKAIDVIDEAGASFR---LRPK----------AKK 413 (731)
T ss_pred HHHHHHHHHHHHHHHhccCcccCHHHHHHHHHh-hhcccccccCCHHHHHHHHHhhhhhh---cCcc----------ccc
Confidence 99999999877654211 12224445544 34554331 1334444432111 1000 012
Q ss_pred cccccHHHHHHHHHhhC--C--CcCHHHHHHHHHHHHHhcc
Q 002337 895 SVVVEYDDFVKVLRELS--P--SLSMAELKKYELLRDQFEG 931 (934)
Q Consensus 895 ~~~it~~df~~al~~~~--p--svs~~~l~~y~~~~~~~~~ 931 (934)
...|+.+|+.+++..+. | .++.++..++..+.+.+..
T Consensus 414 ~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~ 454 (731)
T TIGR02639 414 KANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKA 454 (731)
T ss_pred ccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhc
Confidence 34699999999999884 3 4678888899888877754
No 86
>CHL00181 cbbX CbbX; Provisional
Probab=99.64 E-value=3.7e-15 Score=163.67 Aligned_cols=213 Identities=15% Similarity=0.169 Sum_probs=142.8
Q ss_pred CcCCchHHHHHHHHHhhccCCCccc---c---CCCCceEEEECCCCCcHHHHHHHHHHHhC-------CcEEEEecCccc
Q 002337 368 FVPLQGDTVKILASILAPTLCPSVL---S---LKFRVAVLLHGLPGCGKRTVVRYVARRLG-------IHVVEYSCHNLM 434 (934)
Q Consensus 368 ~~~~~~~~~~~L~~il~p~l~p~~~---~---~~~~~~VLL~GppGtGKTtLaralA~elg-------~~~~~I~~~~L~ 434 (934)
.+|+. ++++++.+++.....+..+ + ..++.+++|+||||||||++|+++|+.+. .+++.+++.++.
T Consensus 25 l~Gl~-~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~ 103 (287)
T CHL00181 25 LVGLA-PVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV 103 (287)
T ss_pred cCCcH-HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence 44544 4556666665433222211 1 23456799999999999999999999862 358999999998
Q ss_pred cccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchh
Q 002337 435 ASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVK 514 (934)
Q Consensus 435 ~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~ 514 (934)
+.+.|.++...+.+|+.|. ++||||||++.+..... ......++...|..+++.
T Consensus 104 ~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~-------~~~~~~e~~~~L~~~me~---------------- 157 (287)
T CHL00181 104 GQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN-------ERDYGSEAIEILLQVMEN---------------- 157 (287)
T ss_pred HHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC-------ccchHHHHHHHHHHHHhc----------------
Confidence 8888888877888888764 58999999999864210 111234555555555432
Q ss_pred hhhhhhcccEEEEEecCCC-----CCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhc
Q 002337 515 EIEKICRQQVLLVAAADSS-----EGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQT 589 (934)
Q Consensus 515 ~~~~~~~~~ViVIatTn~~-----~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t 589 (934)
....++||++++.. ..++|++++||+..|.|++++.+++.+|++.+++.......+......+..+.+..
T Consensus 158 -----~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~ 232 (287)
T CHL00181 158 -----QRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRM 232 (287)
T ss_pred -----CCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC
Confidence 13557788887532 13579999999999999999999999999999875432211111122223233222
Q ss_pred --CCCC-hHHHHHHHHHHHHHHHHhh
Q 002337 590 --SGFM-PRDLHALVADAGANLIRKS 612 (934)
Q Consensus 590 --~Gfv-~~DL~~L~~~A~~~ai~r~ 612 (934)
+.|. +++++++++.+......|.
T Consensus 233 ~~~~~GNaR~vrn~ve~~~~~~~~r~ 258 (287)
T CHL00181 233 EQPLFANARSVRNALDRARMRQANRI 258 (287)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 3355 7999999998877766554
No 87
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.63 E-value=4.4e-15 Score=181.10 Aligned_cols=223 Identities=22% Similarity=0.336 Sum_probs=160.0
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHc----------CCcEEEecCcccc--ccccchhhhhhHHHHHHHHhCCCcEEEe
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELI--NMYIGESEKNVRDIFQKARSARPCVIFF 749 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~--~~~~Gese~~v~~lf~~A~~~~p~vlfi 749 (934)
+...++||+||||||||++|+++|... +..++.++...++ .+|.|+.+..++.+|+.++...++||||
T Consensus 205 ~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfI 284 (758)
T PRK11034 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFI 284 (758)
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEe
Confidence 346789999999999999999999864 4566777666665 4689999999999999998888999999
Q ss_pred ccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC-----CCChhhhCCCCcceeeeecCCCCH
Q 002337 750 DELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNSDV 824 (934)
Q Consensus 750 DEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~-----~lD~allrpGRfd~~i~v~~Pp~~ 824 (934)
||+|.+++.++.++.+.. ...++..++. ...+.+|||||.++ ..|+||.| ||+ .|+++. |+.
T Consensus 285 DEIh~L~g~g~~~~g~~d-~~nlLkp~L~--------~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~e-Ps~ 351 (758)
T PRK11034 285 DEIHTIIGAGAASGGQVD-AANLIKPLLS--------SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITE-PSI 351 (758)
T ss_pred ccHHHHhccCCCCCcHHH-HHHHHHHHHh--------CCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCC-CCH
Confidence 999999977643222111 1223333332 35799999999875 57999999 996 799995 899
Q ss_pred HHHHHHHHHHHhcCCCCcCCCHHHHHhh---------CCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCc
Q 002337 825 SYRERVLKALTRKFKLLEDVSLYSIAKK---------CPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADS 895 (934)
Q Consensus 825 ~~r~~Il~~~~~~~~~~~~~~l~~la~~---------~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~ 895 (934)
+++..||+.+..++....++++...|-. .+..|-....-.++.+|+... |.. ... ...
T Consensus 352 ~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~--~~~-~~~----------~~~ 418 (758)
T PRK11034 352 EETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARA--RLM-PVS----------KRK 418 (758)
T ss_pred HHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhh--ccC-ccc----------ccc
Confidence 9999999999988877777765443332 233444557778888876432 110 000 012
Q ss_pred ccccHHHHHHHHHhhCC----CcCHHHHHHHHHHHHHhc
Q 002337 896 VVVEYDDFVKVLRELSP----SLSMAELKKYELLRDQFE 930 (934)
Q Consensus 896 ~~it~~df~~al~~~~p----svs~~~l~~y~~~~~~~~ 930 (934)
..|+.+|+.+++..... .+..++.+++..+.+.+.
T Consensus 419 ~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~ 457 (758)
T PRK11034 419 KTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLK 457 (758)
T ss_pred cccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhc
Confidence 25888999999887743 245667777777766654
No 88
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.3e-15 Score=156.93 Aligned_cols=154 Identities=18% Similarity=0.306 Sum_probs=119.1
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhC---------CcEEEEecCccccccccchHHHHHHHHHHhhcC-----CCEE
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLG---------IHVVEYSCHNLMASSERKTSAALAQAFNTAQSY-----SPTI 459 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~elg---------~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~-----~P~I 459 (934)
+..++-||||||||||||+|+|++|+.+. .++++||++.+++++.+++.+.+.++|+..... .-..
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVf 253 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVF 253 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEE
Confidence 35567799999999999999999999983 368899999999999999999999998876532 2346
Q ss_pred EEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChh
Q 002337 460 LLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPT 539 (934)
Q Consensus 460 L~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~a 539 (934)
++|||+++|+..|....+.++......-|..+|.+ .+.....++|++.+|+|-.+.||.+
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQ--------------------lDrlK~~~NvliL~TSNl~~siD~A 313 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQ--------------------LDRLKRYPNVLILATSNLTDSIDVA 313 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHH--------------------HHHhccCCCEEEEeccchHHHHHHH
Confidence 78999999998663322222222222223333322 2334557889999999999999999
Q ss_pred hhcccceEEEcCCCCHHHHHHHHHHhcc
Q 002337 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQ 567 (934)
Q Consensus 540 LrrrF~~eI~i~~Pde~~R~~IL~~ll~ 567 (934)
+..|-+-...+|+|+...|++|++..+.
T Consensus 314 fVDRADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 314 FVDRADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred hhhHhhheeecCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999987654
No 89
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.60 E-value=1e-14 Score=180.92 Aligned_cols=206 Identities=23% Similarity=0.307 Sum_probs=140.9
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccc---------ccccchhhhhhHHHHHHHHhCCCcEEEeccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI---------NMYIGESEKNVRDIFQKARSARPCVIFFDELDS 754 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~---------~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~ 754 (934)
+..++|+||||||||++|+++|+.++.+|+.++...+. ..|+|.....+.+.|..+....| ||||||||.
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk 425 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDK 425 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhh
Confidence 44799999999999999999999999999988754432 35888888888899998876666 899999999
Q ss_pred cccCCCCCCCCchhHHHHHHhhhhhccC------------CcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCC
Q 002337 755 LAPARGASGDSGGVMDRVVSQMLAEIDG------------LNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNS 822 (934)
Q Consensus 755 l~~~r~~~~~~~~~~~~v~~~lL~~ldg------------~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp 822 (934)
+.+.. .++. .+.||..||. ......++++|+|||.++.|+++|++ ||+ .|+++. +
T Consensus 426 ~~~~~--~~~~-------~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~-~ 492 (775)
T TIGR00763 426 IGSSF--RGDP-------ASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSG-Y 492 (775)
T ss_pred cCCcc--CCCH-------HHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCC-C
Confidence 98532 1221 2334444432 11112578999999999999999999 995 788884 8
Q ss_pred CHHHHHHHHHHHHh-----cCCCC------cCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccc
Q 002337 823 DVSYRERVLKALTR-----KFKLL------EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRID 891 (934)
Q Consensus 823 ~~~~r~~Il~~~~~-----~~~~~------~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~ 891 (934)
+.+++..|++.++. ...+. .+..+..+++..+..+-.++|+..+...+..++++........ ..
T Consensus 493 ~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~-----~~ 567 (775)
T TIGR00763 493 TEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVEQGEKK-----KS 567 (775)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHHHHHhccCcc-----cC
Confidence 88999999987652 22221 1123556666655666667877777766666655543211110 00
Q ss_pred ccCcccccHHHHHHHHH
Q 002337 892 QADSVVVEYDDFVKVLR 908 (934)
Q Consensus 892 ~~~~~~it~~df~~al~ 908 (934)
....+.|+.+++++.+.
T Consensus 568 ~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 568 EAESVVITPDNLKKYLG 584 (775)
T ss_pred CcccccCCHHHHHHhcC
Confidence 11224677777666653
No 90
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.57 E-value=2.7e-14 Score=156.86 Aligned_cols=209 Identities=15% Similarity=0.179 Sum_probs=140.5
Q ss_pred CcCCchHHHHHHHHHhhccCCCccc---cC---CCCceEEEECCCCCcHHHHHHHHHHHhC-------CcEEEEecCccc
Q 002337 368 FVPLQGDTVKILASILAPTLCPSVL---SL---KFRVAVLLHGLPGCGKRTVVRYVARRLG-------IHVVEYSCHNLM 434 (934)
Q Consensus 368 ~~~~~~~~~~~L~~il~p~l~p~~~---~~---~~~~~VLL~GppGtGKTtLaralA~elg-------~~~~~I~~~~L~ 434 (934)
.+|+. ++++++.+++.....+..+ +. .++.+++|+||||||||++|+++|+.+. .+++.+++.++.
T Consensus 24 l~Gl~-~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 24 LIGLK-PVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred ccCHH-HHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 34444 4566666665443333222 22 3456899999999999999999998873 268999999998
Q ss_pred cccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchh
Q 002337 435 ASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVK 514 (934)
Q Consensus 435 ~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~ 514 (934)
+.+.|.++..++.+|+.|. +++|||||++.+.+.+. ......++...|.++++.
T Consensus 103 ~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~-------~~~~~~~~~~~Ll~~le~---------------- 156 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN-------ERDYGQEAIEILLQVMEN---------------- 156 (284)
T ss_pred HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC-------ccchHHHHHHHHHHHHhc----------------
Confidence 8888888888888888774 58999999998864210 111233444444444431
Q ss_pred hhhhhhcccEEEEEecCCC--C---CCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhh-
Q 002337 515 EIEKICRQQVLLVAAADSS--E---GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQ- 588 (934)
Q Consensus 515 ~~~~~~~~~ViVIatTn~~--~---~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~- 588 (934)
....+++|++++.. + .++|++++||...|++|+++.+++.+|++.++++... ..+ ...+..+...
T Consensus 157 -----~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~---~l~-~~a~~~L~~~l 227 (284)
T TIGR02880 157 -----QRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQY---RFS-AEAEEAFADYI 227 (284)
T ss_pred -----CCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhcc---ccC-HHHHHHHHHHH
Confidence 13567788887542 2 2589999999999999999999999999999876432 111 1222222222
Q ss_pred -----cCC-CChHHHHHHHHHHHHHHHHhh
Q 002337 589 -----TSG-FMPRDLHALVADAGANLIRKS 612 (934)
Q Consensus 589 -----t~G-fv~~DL~~L~~~A~~~ai~r~ 612 (934)
.+. -.++.++++++.+......|.
T Consensus 228 ~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~ 257 (284)
T TIGR02880 228 ALRRTQPHFANARSIRNAIDRARLRQANRL 257 (284)
T ss_pred HHhCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 122 346889999988876665554
No 91
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.56 E-value=6e-14 Score=152.62 Aligned_cols=184 Identities=16% Similarity=0.207 Sum_probs=121.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---C----CcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhh
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRL---G----IHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDV 467 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~el---g----~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~ 467 (934)
+...+++|+|||||||||+|+++|+.+ + .++++++|+++.+.+.+++...++..|..|. ++||||||+|.
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~ 116 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYS 116 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhh
Confidence 344689999999999999999999875 2 3788899999999999999889999998774 57999999999
Q ss_pred ccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCC-----CCCChhhhc
Q 002337 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-----EGLPPTIRR 542 (934)
Q Consensus 468 L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~-----~~Ld~aLrr 542 (934)
|.+.. + .....+....|...++. ....+++|+++... ..++|++++
T Consensus 117 L~~~~-------~-~~~~~~~i~~Ll~~~e~---------------------~~~~~~vila~~~~~~~~~~~~~p~L~s 167 (261)
T TIGR02881 117 LARGG-------E-KDFGKEAIDTLVKGMED---------------------NRNEFVLILAGYSDEMDYFLSLNPGLRS 167 (261)
T ss_pred hccCC-------c-cchHHHHHHHHHHHHhc---------------------cCCCEEEEecCCcchhHHHHhcChHHHh
Confidence 86411 0 01112222222222221 13455666655332 237899999
Q ss_pred ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhh----c--CCCChHHHHHHHHHHHHHHHHh
Q 002337 543 CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQ----T--SGFMPRDLHALVADAGANLIRK 611 (934)
Q Consensus 543 rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~----t--~Gfv~~DL~~L~~~A~~~ai~r 611 (934)
||...+.++.++.+++.+|++.+++.... ..+.+....+.+.+.. . ..-.++.+.+++..|......|
T Consensus 168 Rf~~~i~f~~~~~~el~~Il~~~~~~~~~-~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r 241 (261)
T TIGR02881 168 RFPISIDFPDYTVEELMEIAERMVKEREY-KLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVR 241 (261)
T ss_pred ccceEEEECCCCHHHHHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 99989999999999999999998865322 1111222222222211 1 1134577777777765555443
No 92
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.54 E-value=3.4e-13 Score=151.60 Aligned_cols=210 Identities=25% Similarity=0.343 Sum_probs=144.1
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCC
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGAS 762 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~ 762 (934)
++.+++||||||||||++|+++|++++..+..++++.+. ....+..++... ..++||||||+|.+...
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~------~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~---- 117 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE------KPGDLAAILTNL--EEGDVLFIDEIHRLSPV---- 117 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc------ChHHHHHHHHhc--ccCCEEEEecHhhcchH----
Confidence 357899999999999999999999999988877765432 122344444443 35689999999998532
Q ss_pred CCCchhHHHHHHhhhhh------ccC-CcC-----CCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHH
Q 002337 763 GDSGGVMDRVVSQMLAE------IDG-LND-----SSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERV 830 (934)
Q Consensus 763 ~~~~~~~~~v~~~lL~~------ldg-~~~-----~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~I 830 (934)
....+..++.. ++. ... .-.++.+|++||++..++++|++ ||...+.++. ++.+++.+|
T Consensus 118 ------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~-~~~~e~~~i 188 (328)
T PRK00080 118 ------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEF-YTVEELEKI 188 (328)
T ss_pred ------HHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCC-CCHHHHHHH
Confidence 11122222221 111 000 01247889999999999999998 9998999994 889999999
Q ss_pred HHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHh
Q 002337 831 LKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRE 909 (934)
Q Consensus 831 l~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~ 909 (934)
++...+..++.-+ ..+..+++.| .|.- +.+..+++.+...|..+ ....|+.++..+++..
T Consensus 189 l~~~~~~~~~~~~~~~~~~ia~~~-~G~p-R~a~~~l~~~~~~a~~~-----------------~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 189 VKRSARILGVEIDEEGALEIARRS-RGTP-RIANRLLRRVRDFAQVK-----------------GDGVITKEIADKALDM 249 (328)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHc-CCCc-hHHHHHHHHHHHHHHHc-----------------CCCCCCHHHHHHHHHH
Confidence 9988877654322 2367888885 5543 77777777665555432 1125788888888887
Q ss_pred hCCC---cCHHHHHHHHHHHHHhccC
Q 002337 910 LSPS---LSMAELKKYELLRDQFEGS 932 (934)
Q Consensus 910 ~~ps---vs~~~l~~y~~~~~~~~~~ 932 (934)
+... ++..+.+.+..+.+.|.++
T Consensus 250 ~~~~~~~l~~~~~~~l~~~~~~~~~~ 275 (328)
T PRK00080 250 LGVDELGLDEMDRKYLRTIIEKFGGG 275 (328)
T ss_pred hCCCcCCCCHHHHHHHHHHHHHcCCC
Confidence 7554 5667777777777777653
No 93
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.49 E-value=1.5e-12 Score=144.87 Aligned_cols=204 Identities=24% Similarity=0.332 Sum_probs=132.1
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCC
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASG 763 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~ 763 (934)
+.+++|+||||||||++|+++|++++..+..+.++.+.. ...+...+... ..+.+|||||++.+.+..
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~---- 97 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------PGDLAAILTNL--EEGDVLFIDEIHRLSPAV---- 97 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------chhHHHHHHhc--ccCCEEEEehHhhhCHHH----
Confidence 467999999999999999999999998877766543321 11222333322 356799999999986321
Q ss_pred CCchhHHHHHHhhhhhccCCc---------------CCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHH
Q 002337 764 DSGGVMDRVVSQMLAEIDGLN---------------DSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRE 828 (934)
Q Consensus 764 ~~~~~~~~v~~~lL~~ldg~~---------------~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~ 828 (934)
...|+..|+... .....+.+|++||++..+++++++ ||...+.++. ++.++..
T Consensus 98 ---------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~-l~~~e~~ 165 (305)
T TIGR00635 98 ---------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEF-YTVEELA 165 (305)
T ss_pred ---------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCC-CCHHHHH
Confidence 111222222111 011247899999999999999999 9988889994 8888899
Q ss_pred HHHHHHHhcCCCCc-CCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHH
Q 002337 829 RVLKALTRKFKLLE-DVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVL 907 (934)
Q Consensus 829 ~Il~~~~~~~~~~~-~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al 907 (934)
+|++...+.....- +..+..+++.+ .|+- +.+..+|..++..|.... ...|+.+++.+++
T Consensus 166 ~il~~~~~~~~~~~~~~al~~ia~~~-~G~p-R~~~~ll~~~~~~a~~~~-----------------~~~it~~~v~~~l 226 (305)
T TIGR00635 166 EIVSRSAGLLNVEIEPEAALEIARRS-RGTP-RIANRLLRRVRDFAQVRG-----------------QKIINRDIALKAL 226 (305)
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHh-CCCc-chHHHHHHHHHHHHHHcC-----------------CCCcCHHHHHHHH
Confidence 99988777554322 22366788884 6654 677778877665543221 1246777777777
Q ss_pred HhhCC---CcCHHHHHHHHHHHHHhc
Q 002337 908 RELSP---SLSMAELKKYELLRDQFE 930 (934)
Q Consensus 908 ~~~~p---svs~~~l~~y~~~~~~~~ 930 (934)
..+.. ..+..+...+..+.+.+.
T Consensus 227 ~~l~~~~~~l~~~~~~~L~al~~~~~ 252 (305)
T TIGR00635 227 EMLMIDELGLDEIDRKLLSVLIEQFQ 252 (305)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHhC
Confidence 66532 234555444544555444
No 94
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.45 E-value=2.5e-13 Score=169.35 Aligned_cols=148 Identities=24% Similarity=0.438 Sum_probs=115.6
Q ss_pred CCCCCcceecCCCCCcchHHHHHHHHHc----------CCcEEEecCcccc--ccccchhhhhhHHHHHHHHh-CCCcEE
Q 002337 681 LRKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELI--NMYIGESEKNVRDIFQKARS-ARPCVI 747 (934)
Q Consensus 681 ~~~~~~iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~--~~~~Gese~~v~~lf~~A~~-~~p~vl 747 (934)
.+...+++|+||||||||++|+++|... +.+++.++...+. .+|.|+.++.++.+|+.+.. ..|+||
T Consensus 196 r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~IL 275 (857)
T PRK10865 196 RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVIL 275 (857)
T ss_pred cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEE
Confidence 3456789999999999999999999987 6789999888776 56899999999999998644 578999
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC-----CCChhhhCCCCcceeeeecCCC
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNS 822 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~-----~lD~allrpGRfd~~i~v~~Pp 822 (934)
||||+|.+.+.+++.+. ... ..++... + ..+.+.+||||+..+ .+|+|+.| ||+ .|+++. |
T Consensus 276 fIDEih~l~~~~~~~~~-~d~-~~~lkp~---l-----~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~e-P 341 (857)
T PRK10865 276 FIDELHTMVGAGKADGA-MDA-GNMLKPA---L-----ARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAE-P 341 (857)
T ss_pred EEecHHHhccCCCCccc-hhH-HHHhcch---h-----hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCC-C
Confidence 99999999876543222 111 1222222 2 246799999999987 48999999 998 588886 6
Q ss_pred CHHHHHHHHHHHHhcCCCCc
Q 002337 823 DVSYRERVLKALTRKFKLLE 842 (934)
Q Consensus 823 ~~~~r~~Il~~~~~~~~~~~ 842 (934)
+.+++..|++.+..++....
T Consensus 342 ~~~~~~~iL~~l~~~~e~~~ 361 (857)
T PRK10865 342 SVEDTIAILRGLKERYELHH 361 (857)
T ss_pred CHHHHHHHHHHHhhhhccCC
Confidence 88999999998887765443
No 95
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.5e-12 Score=145.41 Aligned_cols=198 Identities=19% Similarity=0.251 Sum_probs=131.3
Q ss_pred CchHHHHHHHHHhhccCCCccc----cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHH
Q 002337 371 LQGDTVKILASILAPTLCPSVL----SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALA 446 (934)
Q Consensus 371 ~~~~~~~~L~~il~p~l~p~~~----~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~ 446 (934)
.+.+..+.+.+.+..++....+ +....+|.|||||||||||+++.|+|++|+.+++.++..+... .. .|+
T Consensus 205 Md~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~-----n~-dLr 278 (457)
T KOG0743|consen 205 MDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL-----DS-DLR 278 (457)
T ss_pred cChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-----cH-HHH
Confidence 4456666666666666655554 5667799999999999999999999999999999888765332 22 288
Q ss_pred HHHHHhhcCCCEEEEEcchhhccccccCCCCC--Cccccch-HHHHHHHHHhcCCCccccccccCCCCchhhhhhhhccc
Q 002337 447 QAFNTAQSYSPTILLLRDFDVFRNLVSNESLP--NDQVGLS-SEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ 523 (934)
Q Consensus 447 ~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~--~d~~~~~-~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ 523 (934)
.++..+.. -+||+|++||.=...+.+...+ ..+.... -.+..+| .+++-+|. .....
T Consensus 279 ~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLL-NfiDGlwS-----------------scg~E 338 (457)
T KOG0743|consen 279 HLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLL-NFLDGLWS-----------------SCGDE 338 (457)
T ss_pred HHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhh-hhhccccc-----------------cCCCc
Confidence 88777654 4899999999754433222211 1110000 0111122 22222221 11345
Q ss_pred EEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC--CChHHHHH
Q 002337 524 VLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG--FMPRDLHA 599 (934)
Q Consensus 524 ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G--fv~~DL~~ 599 (934)
-++|.|||..+.|||||.| |.+..|+++.-+..+-..+++.++.... +. ....++.+.-.+ .+|+|+..
T Consensus 339 RIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~----~h---~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 339 RIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE----DH---RLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred eEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC----Cc---chhHHHHHHhhcCccCHHHHHH
Confidence 6899999999999999999 8999999999999999999999885421 11 123444444444 68888765
Q ss_pred HH
Q 002337 600 LV 601 (934)
Q Consensus 600 L~ 601 (934)
..
T Consensus 412 ~l 413 (457)
T KOG0743|consen 412 EL 413 (457)
T ss_pred HH
Confidence 43
No 96
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.44 E-value=1.1e-12 Score=162.84 Aligned_cols=191 Identities=19% Similarity=0.285 Sum_probs=124.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccc---------cccccchHHHHHHHHHHhhcCCCEEEEEcchhh
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLM---------ASSERKTSAALAQAFNTAQSYSPTILLLRDFDV 467 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~---------~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~ 467 (934)
+..++|+||||||||++++++|+.++.+++.+++..+. ..+.|...+.+.+.|..+....| ++||||||.
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk 425 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDK 425 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhh
Confidence 34799999999999999999999999999999876432 13445556677788888876666 789999999
Q ss_pred ccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchh-hhhhhhcccEEEEEecCCCCCCChhhhcccce
Q 002337 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVK-EIEKICRQQVLLVAAADSSEGLPPTIRRCFSH 546 (934)
Q Consensus 468 L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~-~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~ 546 (934)
+.+.. . . ...+.|.+++++.. ++.+... ........++++|+|||.++.+++++++||.
T Consensus 426 ~~~~~--~---~-------~~~~aLl~~ld~~~-------~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~- 485 (775)
T TIGR00763 426 IGSSF--R---G-------DPASALLEVLDPEQ-------NNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRME- 485 (775)
T ss_pred cCCcc--C---C-------CHHHHHHHhcCHHh-------cCccccccCCceeccCCEEEEEecCCchhCCHHHhCCee-
Confidence 97521 0 0 11233334443210 0111110 0111223578999999999999999999995
Q ss_pred EEEcCCCCHHHHHHHHHHhccccc----ccc-CCC-CchHHHHHHHhhcC-CCChHHHHHHHHHHHHHH
Q 002337 547 EISMGPLTEQQRVEMLSQLLQPVS----ELT-SDT-GSEEFVKDIIGQTS-GFMPRDLHALVADAGANL 608 (934)
Q Consensus 547 eI~i~~Pde~~R~~IL~~ll~~~~----~l~-~d~-~~~~~L~~la~~t~-Gfv~~DL~~L~~~A~~~a 608 (934)
.|.++.|+.+++.+|++.++.... .+. ... -.+..+..+++.+. .+-.++|...+......+
T Consensus 486 vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~ 554 (775)
T TIGR00763 486 VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKA 554 (775)
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHH
Confidence 899999999999999988762110 010 011 12445666666443 355577776665544433
No 97
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.44 E-value=4.9e-13 Score=138.48 Aligned_cols=166 Identities=19% Similarity=0.279 Sum_probs=98.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCC
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESL 477 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~ 477 (934)
.++|||||||+||||||+.+|++++.++..++++.+-. ...+..++.... ...||||||||.|.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k------~~dl~~il~~l~--~~~ILFIDEIHRlnk------- 115 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK------AGDLAAILTNLK--EGDILFIDEIHRLNK------- 115 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S------CHHHHHHHHT----TT-EEEECTCCC--H-------
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh------HHHHHHHHHhcC--CCcEEEEechhhccH-------
Confidence 47999999999999999999999999999888764321 223334444333 467999999998865
Q ss_pred CCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHH
Q 002337 478 PNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQ 557 (934)
Q Consensus 478 ~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~ 557 (934)
.+++.|...++...-. ..-|.-.....-...-.+..+||||++...|++.++.||.....+..++.++
T Consensus 116 ---------~~qe~LlpamEd~~id---iiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~e 183 (233)
T PF05496_consen 116 ---------AQQEILLPAMEDGKID---IIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEE 183 (233)
T ss_dssp ---------HHHHHHHHHHHCSEEE---EEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHH
T ss_pred ---------HHHHHHHHHhccCeEE---EEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHH
Confidence 3445555555432100 0001000001111123568899999999999999999999888899999999
Q ss_pred HHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChH
Q 002337 558 RVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPR 595 (934)
Q Consensus 558 R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~ 595 (934)
...|++.-.+.... +++ +....++|.++.| +|+
T Consensus 184 l~~Iv~r~a~~l~i---~i~-~~~~~~Ia~rsrG-tPR 216 (233)
T PF05496_consen 184 LAKIVKRSARILNI---EID-EDAAEEIARRSRG-TPR 216 (233)
T ss_dssp HHHHHHHCCHCTT----EE--HHHHHHHHHCTTT-SHH
T ss_pred HHHHHHHHHHHhCC---CcC-HHHHHHHHHhcCC-ChH
Confidence 99999875543221 222 3445677777665 444
No 98
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.43 E-value=1.6e-12 Score=148.20 Aligned_cols=179 Identities=22% Similarity=0.233 Sum_probs=113.4
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcC---------CcEEEecCcccccc----------cc--ch-------h-hhhhHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECS---------LNFLSVKGPELINM----------YI--GE-------S-EKNVRD 734 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~---------~~~i~v~~~~l~~~----------~~--Ge-------s-e~~v~~ 734 (934)
+.+++++||||||||++++++++++. ..+++++|.+..+. .. |. + ......
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 119 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRR 119 (365)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHH
Confidence 46799999999999999999987642 56888888654321 11 11 1 122345
Q ss_pred HHHHHH-hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC---CCChhhhCCC
Q 002337 735 IFQKAR-SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD---LIDPALLRPG 810 (934)
Q Consensus 735 lf~~A~-~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~---~lD~allrpG 810 (934)
+++... ...+.||+|||+|.+... . +.++.+|+...+.......++.+|+++|.++ .+++.+.+
T Consensus 120 l~~~l~~~~~~~vlvIDE~d~L~~~------~----~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s-- 187 (365)
T TIGR02928 120 LYKELNERGDSLIIVLDEIDYLVGD------D----DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS-- 187 (365)
T ss_pred HHHHHHhcCCeEEEEECchhhhccC------C----cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--
Confidence 555543 345789999999999721 1 1356666655222112235799999999987 57888887
Q ss_pred Ccc-eeeeecCCCCHHHHHHHHHHHHhcC-C--CCcCCCHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHHH
Q 002337 811 RFD-KLLYVGVNSDVSYRERVLKALTRKF-K--LLEDVSLYSIAKKC--PPNFTGADMYALCADAWFHAAKR 876 (934)
Q Consensus 811 Rfd-~~i~v~~Pp~~~~r~~Il~~~~~~~-~--~~~~~~l~~la~~~--t~g~sgaDl~~l~~~A~~~A~~r 876 (934)
||. ..|+|+ |++.++..+|++..++.. . ...+.-+..+++.+ +.|. .+....+|+.|+..|..+
T Consensus 188 ~~~~~~i~f~-p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd-~R~al~~l~~a~~~a~~~ 257 (365)
T TIGR02928 188 SLCEEEIIFP-PYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGD-ARKAIDLLRVAGEIAERE 257 (365)
T ss_pred cCCcceeeeC-CCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHc
Confidence 785 678888 689999999999887631 1 11111123333331 1222 234455778887777644
No 99
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.42 E-value=6.7e-13 Score=165.10 Aligned_cols=163 Identities=23% Similarity=0.384 Sum_probs=120.5
Q ss_pred CCCCCcceecCCCCCcchHHHHHHHHHc----------CCcEEEecCcccc--ccccchhhhhhHHHHHHHHh-CCCcEE
Q 002337 681 LRKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELI--NMYIGESEKNVRDIFQKARS-ARPCVI 747 (934)
Q Consensus 681 ~~~~~~iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~--~~~~Gese~~v~~lf~~A~~-~~p~vl 747 (934)
.+...+++|+||||||||++++.+|... +.+++.++...+. ..|.|+.+..++.+|+.++. ..++||
T Consensus 205 r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~IL 284 (852)
T TIGR03345 205 RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIIL 284 (852)
T ss_pred cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEE
Confidence 3445789999999999999999999875 3567778777765 36899999999999999865 468999
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC-----CCChhhhCCCCcceeeeecCCC
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNS 822 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~-----~lD~allrpGRfd~~i~v~~Pp 822 (934)
||||++.+.+.++..+.. ... .+ |+..| ..+.+.+||||+..+ .+||||.| ||. .|+++. |
T Consensus 285 fIDEih~l~~~g~~~~~~-d~~-n~---Lkp~l-----~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~e-p 350 (852)
T TIGR03345 285 FIDEAHTLIGAGGQAGQG-DAA-NL---LKPAL-----ARGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEE-P 350 (852)
T ss_pred EEeChHHhccCCCccccc-cHH-HH---hhHHh-----hCCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCC-C
Confidence 999999999876532221 111 12 22222 245799999998753 48999999 995 799994 8
Q ss_pred CHHHHHHHHHHHHhcCCCCcC-----CCHHHHHhhCCCCCC
Q 002337 823 DVSYRERVLKALTRKFKLLED-----VSLYSIAKKCPPNFT 858 (934)
Q Consensus 823 ~~~~r~~Il~~~~~~~~~~~~-----~~l~~la~~~t~g~s 858 (934)
+.+++..||+.+.+.+....+ ..+..++.. +++|-
T Consensus 351 s~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~l-s~ryi 390 (852)
T TIGR03345 351 DEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVEL-SHRYI 390 (852)
T ss_pred CHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHH-ccccc
Confidence 999999999888876543222 234555565 36664
No 100
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.41 E-value=1.4e-12 Score=135.01 Aligned_cols=159 Identities=25% Similarity=0.375 Sum_probs=100.5
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCC
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASG 763 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~ 763 (934)
-.+++||||||+|||++|+.+|++++.+|...+++.+-. ...+..++.... ...|||||||+.+..
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k------~~dl~~il~~l~--~~~ILFIDEIHRlnk------ 115 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK------AGDLAAILTNLK--EGDILFIDEIHRLNK------ 115 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S------CHHHHHHHHT----TT-EEEECTCCC--H------
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh------HHHHHHHHHhcC--CCcEEEEechhhccH------
Confidence 468999999999999999999999999999998865421 123344444433 456999999999852
Q ss_pred CCchhHHHHHHhhhhhccCCc--------CC-------CCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHH
Q 002337 764 DSGGVMDRVVSQMLAEIDGLN--------DS-------SQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRE 828 (934)
Q Consensus 764 ~~~~~~~~v~~~lL~~ldg~~--------~~-------~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~ 828 (934)
.+...|+..|+... .. -...-+||||++...|.+.|+. ||--...+.. ++.++-.
T Consensus 116 -------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~-Y~~~el~ 185 (233)
T PF05496_consen 116 -------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEF-YSEEELA 185 (233)
T ss_dssp -------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE-----THHHHH
T ss_pred -------HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhc-CCHHHHH
Confidence 23344444444321 11 1247899999999999999998 9998888886 8888888
Q ss_pred HHHHHHHhcCCCCcCCC-HHHHHhhCCCCCCHHHHHHHHHH
Q 002337 829 RVLKALTRKFKLLEDVS-LYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 829 ~Il~~~~~~~~~~~~~~-l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
.|++.-.+.+++.-+.+ ..++|+++ .-+++=-.+|+++
T Consensus 186 ~Iv~r~a~~l~i~i~~~~~~~Ia~rs--rGtPRiAnrll~r 224 (233)
T PF05496_consen 186 KIVKRSARILNIEIDEDAAEEIARRS--RGTPRIANRLLRR 224 (233)
T ss_dssp HHHHHCCHCTT-EE-HHHHHHHHHCT--TTSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 88887777766544333 56777773 4455544445443
No 101
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.39 E-value=2.8e-12 Score=141.06 Aligned_cols=146 Identities=21% Similarity=0.300 Sum_probs=105.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCC----CEEEEEcchhhccccccC
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYS----PTILLLRDFDVFRNLVSN 474 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~----P~IL~IDEID~L~~~~~~ 474 (934)
+.+|+|||||||||+++.||+.++.+|..++.- ..+.+.++++++.|+... ..|||+|||+.|....
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv-------~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q-- 120 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAV-------TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ-- 120 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-------cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh--
Confidence 589999999999999999999999999999874 445678899999996443 4899999999886511
Q ss_pred CCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecC--CCCCCChhhhcccceEEEcCC
Q 002337 475 ESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAAD--SSEGLPPTIRRCFSHEISMGP 552 (934)
Q Consensus 475 ~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn--~~~~Ld~aLrrrF~~eI~i~~ 552 (934)
+..+...++ .+.+++||||+ ..-.+.+++++|.. .+.+.+
T Consensus 121 --------------QD~lLp~vE-----------------------~G~iilIGATTENPsF~ln~ALlSR~~-vf~lk~ 162 (436)
T COG2256 121 --------------QDALLPHVE-----------------------NGTIILIGATTENPSFELNPALLSRAR-VFELKP 162 (436)
T ss_pred --------------hhhhhhhhc-----------------------CCeEEEEeccCCCCCeeecHHHhhhhh-eeeeec
Confidence 112222222 67889999884 34569999999984 889999
Q ss_pred CCHHHHHHHHHHhcccc-cccc-CCC-CchHHHHHHHhhcCC
Q 002337 553 LTEQQRVEMLSQLLQPV-SELT-SDT-GSEEFVKDIIGQTSG 591 (934)
Q Consensus 553 Pde~~R~~IL~~ll~~~-~~l~-~d~-~~~~~L~~la~~t~G 591 (934)
.+.++...+++.-+... ..+. ..+ -.+..++.++..+.|
T Consensus 163 L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G 204 (436)
T COG2256 163 LSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG 204 (436)
T ss_pred CCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc
Confidence 99999999998733222 1111 001 123455666666554
No 102
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.39 E-value=4.9e-12 Score=145.07 Aligned_cols=192 Identities=23% Similarity=0.367 Sum_probs=130.0
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccc-ccccchhhhh-hHHHHHHH----HhCCCcEEEeccccccc
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI-NMYIGESEKN-VRDIFQKA----RSARPCVIFFDELDSLA 756 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~-~~~~Gese~~-v~~lf~~A----~~~~p~vlfiDEid~l~ 756 (934)
+..++||+||||||||++|+++|..++.+|+.++++.+. ..|+|+...+ +..+++.+ ....++||||||||.+.
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~ 186 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIA 186 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhc
Confidence 357899999999999999999999999999999998875 3688886544 45554432 34578999999999998
Q ss_pred cCCCCCCCCchh-HHHHHHhhhhhccCCc----------CCCCCEEEEEEcCCCC-------------------------
Q 002337 757 PARGASGDSGGV-MDRVVSQMLAEIDGLN----------DSSQDLFIIGASNRPD------------------------- 800 (934)
Q Consensus 757 ~~r~~~~~~~~~-~~~v~~~lL~~ldg~~----------~~~~~v~vI~aTNrp~------------------------- 800 (934)
+++.+.+....+ ...+.+.||..|||.. ....+.++|.|+|-..
T Consensus 187 ~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~ 266 (412)
T PRK05342 187 RKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFG 266 (412)
T ss_pred cccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCc
Confidence 774432111111 1357788888888631 1112455666655410
Q ss_pred ---------------------------CCChhhhCCCCcceeeeecCCCCHHHHHHHHH----HHHhcC-------CCCc
Q 002337 801 ---------------------------LIDPALLRPGRFDKLLYVGVNSDVSYRERVLK----ALTRKF-------KLLE 842 (934)
Q Consensus 801 ---------------------------~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~----~~~~~~-------~~~~ 842 (934)
.+.|+++ ||+|..++|. |.+.+...+|+. .+++++ .+.-
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f~-~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L 343 (412)
T PRK05342 267 AEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATLE-ELDEEALVRILTEPKNALVKQYQKLFEMDGVEL 343 (412)
T ss_pred cccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeecC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE
Confidence 0234555 5999999998 588999999986 344322 1211
Q ss_pred CC---CHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHH
Q 002337 843 DV---SLYSIAKKC-PPNFTGADMYALCADAWFHAAKRK 877 (934)
Q Consensus 843 ~~---~l~~la~~~-t~g~sgaDl~~l~~~A~~~A~~r~ 877 (934)
.+ -+..||+.+ ..+|-++.|+.++++.....+.+.
T Consensus 344 ~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 344 EFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred EECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 11 255677753 455667889999988877777654
No 103
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.38 E-value=6.1e-12 Score=145.07 Aligned_cols=197 Identities=22% Similarity=0.257 Sum_probs=125.3
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc-----CCcEEEecCccccc----------cccc-------hh-hhhhHHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELIN----------MYIG-------ES-EKNVRDIFQKAR 740 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~----------~~~G-------es-e~~v~~lf~~A~ 740 (934)
+.+++++||||||||++++.+++++ +..++++++....+ ...+ .+ +..+..+++...
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 134 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD 134 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999998876 57789998864322 1112 11 122233333333
Q ss_pred h-CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC---CCChhhhCCCCcc-ee
Q 002337 741 S-ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD---LIDPALLRPGRFD-KL 815 (934)
Q Consensus 741 ~-~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~---~lD~allrpGRfd-~~ 815 (934)
. ..+.||+|||+|.+...++ ..++..|+..++... ..++.+|+++|.++ .+++.+.+ ||. ..
T Consensus 135 ~~~~~~viviDE~d~l~~~~~---------~~~l~~l~~~~~~~~--~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~ 201 (394)
T PRK00411 135 ERDRVLIVALDDINYLFEKEG---------NDVLYSLLRAHEEYP--GARIGVIGISSDLTFLYILDPRVKS--VFRPEE 201 (394)
T ss_pred hcCCEEEEEECCHhHhhccCC---------chHHHHHHHhhhccC--CCeEEEEEEECCcchhhhcCHHHHh--cCCcce
Confidence 2 4568999999999972211 235677776666543 23788999988774 56787776 664 56
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCC---CCcCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHHHHHHhcccCCCCCCccc
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFK---LLEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHAAKRKVLSSDSNSDSSRI 890 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~---~~~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~ 890 (934)
|+++ |++.++..+|++..++... ...+..+..+++. +.+.+| +.+-.+|..|+..|..+.
T Consensus 202 i~f~-py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~-~~~~~Gd~r~a~~ll~~a~~~a~~~~------------- 266 (394)
T PRK00411 202 IYFP-PYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADL-TAREHGDARVAIDLLRRAGLIAEREG------------- 266 (394)
T ss_pred eecC-CCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHH-HHHhcCcHHHHHHHHHHHHHHHHHcC-------------
Confidence 7888 5899999999988876421 1122224555655 233222 344477877777775432
Q ss_pred cccCcccccHHHHHHHHHhhCC
Q 002337 891 DQADSVVVEYDDFVKVLRELSP 912 (934)
Q Consensus 891 ~~~~~~~it~~df~~al~~~~p 912 (934)
...|+.+|+.+|+..+.+
T Consensus 267 ----~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 267 ----SRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred ----CCCcCHHHHHHHHHHHHH
Confidence 124667777777766543
No 104
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.37 E-value=4.7e-12 Score=139.26 Aligned_cols=192 Identities=24% Similarity=0.391 Sum_probs=119.5
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCC----CcEEEeccccccccCC
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSAR----PCVIFFDELDSLAPAR 759 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~----p~vlfiDEid~l~~~r 759 (934)
-.+++||||||||||++|+.+|...+.+|..+++.. .+-+.+|.+|++|+... ..|||+|||+.+-..
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~- 119 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA- 119 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh-
Confidence 468999999999999999999999999999998632 24477999999996533 479999999998532
Q ss_pred CCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEc--CCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHH-HHh
Q 002337 760 GASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGAS--NRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKA-LTR 836 (934)
Q Consensus 760 ~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aT--Nrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~-~~~ 836 (934)
+ ...||-.|+ ++.|++|||| |..-.+.+||++ |.- ++.+. |-+.++-..+++. +..
T Consensus 120 -----Q-------QD~lLp~vE-----~G~iilIGATTENPsF~ln~ALlS--R~~-vf~lk-~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 120 -----Q-------QDALLPHVE-----NGTIILIGATTENPSFELNPALLS--RAR-VFELK-PLSSEDIKKLLKRALLD 178 (436)
T ss_pred -----h-------hhhhhhhhc-----CCeEEEEeccCCCCCeeecHHHhh--hhh-eeeee-cCCHHHHHHHHHHHHhh
Confidence 1 233444443 3568888866 444589999999 764 34444 4566666666654 332
Q ss_pred -cCCCC------cCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHh
Q 002337 837 -KFKLL------EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRE 909 (934)
Q Consensus 837 -~~~~~------~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~ 909 (934)
...+. ++.-++.++.. +++|.+.+.+..-+.+.- .+. .. .++.+++++.+++
T Consensus 179 ~~rgl~~~~~~i~~~a~~~l~~~-----s~GD~R~aLN~LE~~~~~-----~~~----------~~-~~~~~~l~~~l~~ 237 (436)
T COG2256 179 EERGLGGQIIVLDEEALDYLVRL-----SNGDARRALNLLELAALS-----AEP----------DE-VLILELLEEILQR 237 (436)
T ss_pred hhcCCCcccccCCHHHHHHHHHh-----cCchHHHHHHHHHHHHHh-----cCC----------Cc-ccCHHHHHHHHhh
Confidence 22332 11123344443 567877776543322210 000 01 2336666666666
Q ss_pred hCCCcCHHHHHHHHHH
Q 002337 910 LSPSLSMAELKKYELL 925 (934)
Q Consensus 910 ~~psvs~~~l~~y~~~ 925 (934)
..+.-...-=.+|.-+
T Consensus 238 ~~~~~Dk~gD~hYdli 253 (436)
T COG2256 238 RSARFDKDGDAHYDLI 253 (436)
T ss_pred hhhccCCCcchHHHHH
Confidence 6554444433455443
No 105
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.36 E-value=1.8e-12 Score=161.96 Aligned_cols=165 Identities=28% Similarity=0.456 Sum_probs=121.6
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHHc----------CCcEEEecCcccc--ccccchhhhhhHHHHHHHHhCCCcEE
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELI--NMYIGESEKNVRDIFQKARSARPCVI 747 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~--~~~~Gese~~v~~lf~~A~~~~p~vl 747 (934)
..+...+++|+||||||||++|+++|... +..++.++...++ .+|.|+.|..++.+|+.++...++||
T Consensus 196 ~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~IL 275 (821)
T CHL00095 196 GRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIIL 275 (821)
T ss_pred cccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEE
Confidence 44556799999999999999999999876 4689999988887 57999999999999999988889999
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC-----CCChhhhCCCCcceeeeecCCC
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNS 822 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~-----~lD~allrpGRfd~~i~v~~Pp 822 (934)
||||+|.+.+.++..+.. . ...++...| ..+.+.+||||+..+ ..||++.| ||.. |.++. |
T Consensus 276 fiDEih~l~~~g~~~g~~-~-~a~lLkp~l--------~rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~~-I~v~e-p 341 (821)
T CHL00095 276 VIDEVHTLIGAGAAEGAI-D-AANILKPAL--------ARGELQCIGATTLDEYRKHIEKDPALER--RFQP-VYVGE-P 341 (821)
T ss_pred EEecHHHHhcCCCCCCcc-c-HHHHhHHHH--------hCCCcEEEEeCCHHHHHHHHhcCHHHHh--cceE-EecCC-C
Confidence 999999999765432221 1 112222222 235789999999775 57999999 9974 78885 7
Q ss_pred CHHHHHHHHHHHHhcC----CCC-cCCCHHHHHhhCCCCCCH
Q 002337 823 DVSYRERVLKALTRKF----KLL-EDVSLYSIAKKCPPNFTG 859 (934)
Q Consensus 823 ~~~~r~~Il~~~~~~~----~~~-~~~~l~~la~~~t~g~sg 859 (934)
+.++...|++.+...+ ++. .+..+..++.. +.+|.+
T Consensus 342 ~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~l-s~~yi~ 382 (821)
T CHL00095 342 SVEETIEILFGLRSRYEKHHNLSISDKALEAAAKL-SDQYIA 382 (821)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhccCc
Confidence 7888889987665432 221 22224555555 466654
No 106
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.35 E-value=2.6e-12 Score=160.91 Aligned_cols=163 Identities=26% Similarity=0.440 Sum_probs=122.2
Q ss_pred CCCCCcceecCCCCCcchHHHHHHHHHc----------CCcEEEecCcccc--ccccchhhhhhHHHHHHHHh-CCCcEE
Q 002337 681 LRKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELI--NMYIGESEKNVRDIFQKARS-ARPCVI 747 (934)
Q Consensus 681 ~~~~~~iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~--~~~~Gese~~v~~lf~~A~~-~~p~vl 747 (934)
.+...+++|+||||||||++++++|... +.+++.++...+. .+|.|+.++.++.+|+.+.. ..|+||
T Consensus 191 r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~IL 270 (852)
T TIGR03346 191 RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIIL 270 (852)
T ss_pred cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEE
Confidence 3456789999999999999999999875 6778888877775 57899999999999999865 468999
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC-----CCChhhhCCCCcceeeeecCCC
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNS 822 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~-----~lD~allrpGRfd~~i~v~~Pp 822 (934)
||||+|.+.+.++..+. .+ ..+.|...+ ....+.+||||+..+ .+|+|+.| ||. .|+++. |
T Consensus 271 fIDEih~l~~~g~~~~~----~d-~~~~Lk~~l-----~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~-p 336 (852)
T TIGR03346 271 FIDELHTLVGAGKAEGA----MD-AGNMLKPAL-----ARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDE-P 336 (852)
T ss_pred EeccHHHhhcCCCCcch----hH-HHHHhchhh-----hcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCC-C
Confidence 99999999875532221 11 222232222 245799999999874 47999999 996 588996 7
Q ss_pred CHHHHHHHHHHHHhcCCCCcCCC-----HHHHHhhCCCCCC
Q 002337 823 DVSYRERVLKALTRKFKLLEDVS-----LYSIAKKCPPNFT 858 (934)
Q Consensus 823 ~~~~r~~Il~~~~~~~~~~~~~~-----l~~la~~~t~g~s 858 (934)
+.+++..||+.+..++.....+. +...+.. +++|-
T Consensus 337 ~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~l-s~~yi 376 (852)
T TIGR03346 337 TVEDTISILRGLKERYEVHHGVRITDPAIVAAATL-SHRYI 376 (852)
T ss_pred CHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHh-ccccc
Confidence 89999999999988876554442 3344444 35554
No 107
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.35 E-value=7.3e-12 Score=148.93 Aligned_cols=185 Identities=23% Similarity=0.293 Sum_probs=120.0
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc----------CCcEEEecCccc-------cccccchhhh----------------
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPEL-------INMYIGESEK---------------- 730 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l-------~~~~~Gese~---------------- 730 (934)
+.+++|+||||||||++|+++...+ +.+|+.++|... ....+|....
T Consensus 86 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~ 165 (531)
T TIGR02902 86 PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQ 165 (531)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCccc
Confidence 5689999999999999999997642 367999997531 1111111000
Q ss_pred hhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccC------------C-------------cC
Q 002337 731 NVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG------------L-------------ND 785 (934)
Q Consensus 731 ~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg------------~-------------~~ 785 (934)
.-...+.+ +...+|||||++.+.+. ..+.||..|+. . ..
T Consensus 166 ~~~G~l~~---a~gG~L~IdEI~~L~~~-------------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (531)
T TIGR02902 166 PKPGAVTR---AHGGVLFIDEIGELHPV-------------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNG 229 (531)
T ss_pred ccCchhhc---cCCcEEEEechhhCCHH-------------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccC
Confidence 00112222 33469999999999632 23333332211 0 00
Q ss_pred CCCCEEEE-EEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHH
Q 002337 786 SSQDLFII-GASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMY 863 (934)
Q Consensus 786 ~~~~v~vI-~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~ 863 (934)
...++.+| +|||.|+.|+|++++ |+. .|+++ |...++...|++..+++..+.-+ ..+..++.. .++++++.
T Consensus 230 ~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~-pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y---~~n~Rel~ 302 (531)
T TIGR02902 230 LPADFRLIGATTRNPEEIPPALRS--RCV-EIFFR-PLLDEEIKEIAKNAAEKIGINLEKHALELIVKY---ASNGREAV 302 (531)
T ss_pred cccceEEEEEecCCcccCChHHhh--hhh-eeeCC-CCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHh---hhhHHHHH
Confidence 11234454 556779999999999 986 56676 46788899999999887654322 224455544 34899999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHH
Q 002337 864 ALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLR 908 (934)
Q Consensus 864 ~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~ 908 (934)
++|+.|+..|..+. ...|+.+|+++++.
T Consensus 303 nll~~Aa~~A~~~~-----------------~~~It~~dI~~vl~ 330 (531)
T TIGR02902 303 NIVQLAAGIALGEG-----------------RKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHHhhCC-----------------CcEEcHHHHHHHhC
Confidence 99999987775431 13599999999986
No 108
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.3e-11 Score=147.62 Aligned_cols=139 Identities=18% Similarity=0.258 Sum_probs=97.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEecCcccc--ccccchHHHHHHHHHHhh-cCCCEEEEEcc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMA--SSERKTSAALAQAFNTAQ-SYSPTILLLRD 464 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el----------g~~~~~I~~~~L~~--~~~g~~e~~L~~~f~~A~-~~~P~IL~IDE 464 (934)
.+-+|+|.||+|||.++.-+|+.. +..++.++...+.+ ++.++.+.+++.+..++. ...+.||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 356999999999999999999986 23456666655444 445788999999998887 45678999999
Q ss_pred hhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCC-----CChh
Q 002337 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG-----LPPT 539 (934)
Q Consensus 465 ID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~-----Ld~a 539 (934)
++.+...... .+ .......|...+. ++.+-+||||+.-+. =+|+
T Consensus 289 lh~lvg~g~~-------~~-~~d~~nlLkp~L~-----------------------rg~l~~IGatT~e~Y~k~iekdPa 337 (898)
T KOG1051|consen 289 LHWLVGSGSN-------YG-AIDAANLLKPLLA-----------------------RGGLWCIGATTLETYRKCIEKDPA 337 (898)
T ss_pred eeeeecCCCc-------ch-HHHHHHhhHHHHh-----------------------cCCeEEEecccHHHHHHHHhhCcc
Confidence 9988763211 11 2233333433322 455899999873322 4789
Q ss_pred hhcccceEEEcCCCCHHHHHHHHHHhccc
Q 002337 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQP 568 (934)
Q Consensus 540 LrrrF~~eI~i~~Pde~~R~~IL~~ll~~ 568 (934)
+-++|+ .+.++.|+.+.-..||..+-..
T Consensus 338 lErrw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 338 LERRWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred hhhCcc-eeEeccCcccchhhhhhhhhhh
Confidence 999997 7788888887766677665443
No 109
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.34 E-value=1.1e-11 Score=152.59 Aligned_cols=201 Identities=20% Similarity=0.288 Sum_probs=137.4
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccc---------ccccchhhhhhHHHHHHHHhCCCcEEEecccc
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI---------NMYIGESEKNVRDIFQKARSARPCVIFFDELD 753 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~---------~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid 753 (934)
++..++|+||||+|||++++.+|+.++.+|+.++..... ..|.|.....+.+.+..+....| ||||||+|
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEid 426 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEID 426 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChh
Confidence 356799999999999999999999999999888754432 24778777777777777655555 89999999
Q ss_pred ccccCCCCCCCCchhHHHHHHhhhhhccC---------C---cCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCC
Q 002337 754 SLAPARGASGDSGGVMDRVVSQMLAEIDG---------L---NDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVN 821 (934)
Q Consensus 754 ~l~~~r~~~~~~~~~~~~v~~~lL~~ldg---------~---~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~P 821 (934)
.+.+... ++ ..+.|+..||. + .-.-.+|++|||+|.. .|+|+|+. ||+ .|.+. |
T Consensus 427 k~~~~~~--g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~-~ 492 (784)
T PRK10787 427 KMSSDMR--GD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLS-G 492 (784)
T ss_pred hcccccC--CC-------HHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecC-C
Confidence 9975421 11 22344444442 0 1123579999999987 59999999 996 56666 4
Q ss_pred CCHHHHHHHHHHHHhc-----CCCCc-C--C---CHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccc
Q 002337 822 SDVSYRERVLKALTRK-----FKLLE-D--V---SLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRI 890 (934)
Q Consensus 822 p~~~~r~~Il~~~~~~-----~~~~~-~--~---~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~ 890 (934)
++.++..+|.+.++.. ..+.. . + -+..+++.++..|-.+.|+..++..+..++.+.+....
T Consensus 493 ~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~-------- 564 (784)
T PRK10787 493 YTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKS-------- 564 (784)
T ss_pred CCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCC--------
Confidence 7788999998777631 11111 1 1 14566666666666788888888777666665542211
Q ss_pred cccCcccccHHHHHHHHH
Q 002337 891 DQADSVVVEYDDFVKVLR 908 (934)
Q Consensus 891 ~~~~~~~it~~df~~al~ 908 (934)
...+.|+.+++.+.+.
T Consensus 565 --~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 565 --LKHIEINGDNLHDYLG 580 (784)
T ss_pred --CceeeecHHHHHHHhC
Confidence 1235688888877775
No 110
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.34 E-value=4.1e-11 Score=134.81 Aligned_cols=195 Identities=16% Similarity=0.195 Sum_probs=121.8
Q ss_pred HHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhh
Q 002337 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQ 453 (934)
Q Consensus 374 ~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~ 453 (934)
+..+.+...+.....+ ..+..+++|+||||||||++++++|++++..+..++++.+. ....+...+...
T Consensus 32 ~~~~~l~~~l~~~~~~----~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~------~~~~l~~~l~~l- 100 (328)
T PRK00080 32 KVKENLKIFIEAAKKR----GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE------KPGDLAAILTNL- 100 (328)
T ss_pred HHHHHHHHHHHHHHhc----CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc------ChHHHHHHHHhc-
Confidence 3455555554433222 13345799999999999999999999999988777665322 223344444433
Q ss_pred cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCC
Q 002337 454 SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS 533 (934)
Q Consensus 454 ~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~ 533 (934)
..+.++||||+|.+... ....+...+......... ..+. ..... .....++.+|++||++
T Consensus 101 -~~~~vl~IDEi~~l~~~------------~~e~l~~~~e~~~~~~~l-----~~~~-~~~~~-~~~l~~~~li~at~~~ 160 (328)
T PRK00080 101 -EEGDVLFIDEIHRLSPV------------VEEILYPAMEDFRLDIMI-----GKGP-AARSI-RLDLPPFTLIGATTRA 160 (328)
T ss_pred -ccCCEEEEecHhhcchH------------HHHHHHHHHHhcceeeee-----ccCc-cccce-eecCCCceEEeecCCc
Confidence 35789999999987541 011122222221100000 0000 00000 0012457899999999
Q ss_pred CCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHH
Q 002337 534 EGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 534 ~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A 604 (934)
..+++.+++||...+.++.|+.+++.+|++........ .. .+..+..++..+.|.. +.+..+++.+
T Consensus 161 ~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~---~~-~~~~~~~ia~~~~G~p-R~a~~~l~~~ 226 (328)
T PRK00080 161 GLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV---EI-DEEGALEIARRSRGTP-RIANRLLRRV 226 (328)
T ss_pred ccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC---Cc-CHHHHHHHHHHcCCCc-hHHHHHHHHH
Confidence 99999999999889999999999999999987764322 22 2445788888888855 5555555543
No 111
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.33 E-value=1.3e-11 Score=142.91 Aligned_cols=171 Identities=18% Similarity=0.271 Sum_probs=112.8
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc-----CCcEEEecCccccccccchhhh-hhHHHHHHHHhCCCcEEEecccccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESEK-NVRDIFQKARSARPCVIFFDELDSLAP 757 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~~Gese~-~v~~lf~~A~~~~p~vlfiDEid~l~~ 757 (934)
...++||||+|+|||+|++++++++ +..++++++.++...+...... .+....+..+ .+.+|+|||++.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 3568999999999999999999876 5778999988877655443222 2222223332 357999999999874
Q ss_pred CCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCC---CChhhhCCCCcce--eeeecCCCCHHHHHHHHH
Q 002337 758 ARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL---IDPALLRPGRFDK--LLYVGVNSDVSYRERVLK 832 (934)
Q Consensus 758 ~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~---lD~allrpGRfd~--~i~v~~Pp~~~~r~~Il~ 832 (934)
++. ....++..++.+... +..+||+++..|.. +++.+.+ ||.. .+.++ ||+.+.|..|++
T Consensus 214 ~~~-----------~~~~l~~~~n~~~~~-~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~-~pd~~~r~~il~ 278 (405)
T TIGR00362 214 KER-----------TQEEFFHTFNALHEN-GKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIE-PPDLETRLAILQ 278 (405)
T ss_pred CHH-----------HHHHHHHHHHHHHHC-CCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeC-CCCHHHHHHHHH
Confidence 421 112222222222222 23456656655653 5688888 9975 57777 599999999999
Q ss_pred HHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHH
Q 002337 833 ALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHA 873 (934)
Q Consensus 833 ~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A 873 (934)
...+..++. ++..+..+|+++ .-+.++|..++......|
T Consensus 279 ~~~~~~~~~l~~e~l~~ia~~~--~~~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 279 KKAEEEGLELPDEVLEFIAKNI--RSNVRELEGALNRLLAYA 318 (405)
T ss_pred HHHHHcCCCCCHHHHHHHHHhc--CCCHHHHHHHHHHHHHHH
Confidence 998865543 223367788774 446788888877655444
No 112
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.33 E-value=1.2e-11 Score=144.94 Aligned_cols=170 Identities=19% Similarity=0.278 Sum_probs=112.0
Q ss_pred CcceecCCCCCcchHHHHHHHHHc-----CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCC
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR 759 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r 759 (934)
..++||||+|||||+|++++++++ +..++++++.++...+.+........-|.... ..+.+|+|||++.+..++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCCH
Confidence 569999999999999999999887 56689999988877665543322222233221 256799999999986442
Q ss_pred CCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCC---CChhhhCCCCcce--eeeecCCCCHHHHHHHHHHH
Q 002337 760 GASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL---IDPALLRPGRFDK--LLYVGVNSDVSYRERVLKAL 834 (934)
Q Consensus 760 ~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~---lD~allrpGRfd~--~i~v~~Pp~~~~r~~Il~~~ 834 (934)
. ....++..++.+...+ ..+||+++..|.. +++++.+ ||.. .+.+. ||+.+.|.+|++..
T Consensus 228 ~-----------~~~~l~~~~n~l~~~~-~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~-~pd~~~r~~il~~~ 292 (450)
T PRK00149 228 R-----------TQEEFFHTFNALHEAG-KQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIE-PPDLETRIAILKKK 292 (450)
T ss_pred H-----------HHHHHHHHHHHHHHCC-CcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEec-CCCHHHHHHHHHHH
Confidence 1 1122333233222222 3356655555554 6789888 9975 56676 69999999999998
Q ss_pred HhcCC--CCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHH
Q 002337 835 TRKFK--LLEDVSLYSIAKKCPPNFTGADMYALCADAWFHA 873 (934)
Q Consensus 835 ~~~~~--~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A 873 (934)
.+..+ +.+++ ++.+|+++ +=+.++|..++......|
T Consensus 293 ~~~~~~~l~~e~-l~~ia~~~--~~~~R~l~~~l~~l~~~~ 330 (450)
T PRK00149 293 AEEEGIDLPDEV-LEFIAKNI--TSNVRELEGALNRLIAYA 330 (450)
T ss_pred HHHcCCCCCHHH-HHHHHcCc--CCCHHHHHHHHHHHHHHH
Confidence 87644 33333 77778773 346677777776654443
No 113
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.32 E-value=1.6e-11 Score=140.19 Aligned_cols=191 Identities=24% Similarity=0.361 Sum_probs=129.3
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccc-ccccchhh-hhhHHHHHHH----HhCCCcEEEecccccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI-NMYIGESE-KNVRDIFQKA----RSARPCVIFFDELDSLAP 757 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~-~~~~Gese-~~v~~lf~~A----~~~~p~vlfiDEid~l~~ 757 (934)
..++||+||||||||++|+++|..++.+|..+++..+. ..|+|+.. ..+..+++.+ ....++||||||+|.+.+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 46899999999999999999999999999999988875 35889863 4445554432 245678999999999998
Q ss_pred CCCCCCCCchhH-HHHHHhhhhhccCCcC----------CCCCEEEEEEcCCC---------------------------
Q 002337 758 ARGASGDSGGVM-DRVVSQMLAEIDGLND----------SSQDLFIIGASNRP--------------------------- 799 (934)
Q Consensus 758 ~r~~~~~~~~~~-~~v~~~lL~~ldg~~~----------~~~~v~vI~aTNrp--------------------------- 799 (934)
++.+.+-...+. ..+.+.||..|+|... ...+.++|.|+|-.
T Consensus 196 ~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~ 275 (413)
T TIGR00382 196 KSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGA 275 (413)
T ss_pred hhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccc
Confidence 654321111111 2577888888876521 12356777777751
Q ss_pred C-----------------------CCChhhhCCCCcceeeeecCCCCHHHHHHHHHH----HHhcC-------CCCcCC-
Q 002337 800 D-----------------------LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKA----LTRKF-------KLLEDV- 844 (934)
Q Consensus 800 ~-----------------------~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~----~~~~~-------~~~~~~- 844 (934)
+ .+.|+++ ||+|..++|. |-+.+...+|+.. +.+++ ++.-.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f~-pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t 352 (413)
T TIGR00382 276 EVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATLE-KLDEEALIAILTKPKNALVKQYQALFKMDNVELDFE 352 (413)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeecC-CCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEC
Confidence 0 0235565 4999999997 4789999999865 33322 111111
Q ss_pred --CHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHH
Q 002337 845 --SLYSIAKKC-PPNFTGADMYALCADAWFHAAKRK 877 (934)
Q Consensus 845 --~l~~la~~~-t~g~sgaDl~~l~~~A~~~A~~r~ 877 (934)
-+..+|+.+ ...|-++-|+.++++..+.++-+.
T Consensus 353 ~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 353 EEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 256677764 345556788898888777766543
No 114
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.32 E-value=1.4e-11 Score=129.72 Aligned_cols=183 Identities=19% Similarity=0.194 Sum_probs=120.9
Q ss_pred HHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhh
Q 002337 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQ 453 (934)
Q Consensus 374 ~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~ 453 (934)
++.++|.-.+......+ ..-.++||+||||.||||||..+|+++|..+-..+++-+- ..+.+..++...+
T Consensus 33 ~vk~~L~ifI~AAk~r~----e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le------K~gDlaaiLt~Le 102 (332)
T COG2255 33 KVKEQLQIFIKAAKKRG----EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE------KPGDLAAILTNLE 102 (332)
T ss_pred HHHHHHHHHHHHHHhcC----CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc------ChhhHHHHHhcCC
Confidence 45555554444333221 2335799999999999999999999999999888877432 3344555555443
Q ss_pred cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCC
Q 002337 454 SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS 533 (934)
Q Consensus 454 ~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~ 533 (934)
..-|+|||||+.+.+ .+.++|...++...-+-. .+.. .....-...-.++-+||||++.
T Consensus 103 --~~DVLFIDEIHrl~~----------------~vEE~LYpaMEDf~lDI~--IG~g-p~Arsv~ldLppFTLIGATTr~ 161 (332)
T COG2255 103 --EGDVLFIDEIHRLSP----------------AVEEVLYPAMEDFRLDII--IGKG-PAARSIRLDLPPFTLIGATTRA 161 (332)
T ss_pred --cCCeEEEehhhhcCh----------------hHHHHhhhhhhheeEEEE--EccC-CccceEeccCCCeeEeeecccc
Confidence 357999999999876 234444444443211000 0000 0111112224678899999999
Q ss_pred CCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC
Q 002337 534 EGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (934)
Q Consensus 534 ~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G 591 (934)
..|...||.||.....+..++.++..+|++...+.+.. +.+ +....++|+++.|
T Consensus 162 G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i---~i~-~~~a~eIA~rSRG 215 (332)
T COG2255 162 GMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI---EID-EEAALEIARRSRG 215 (332)
T ss_pred ccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC---CCC-hHHHHHHHHhccC
Confidence 99999999999999999999999999999876643322 333 3335668877776
No 115
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.30 E-value=1.3e-10 Score=122.71 Aligned_cols=209 Identities=26% Similarity=0.369 Sum_probs=143.0
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCC
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASG 763 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~ 763 (934)
..++|||||||.|||+||..+|++++.++-..+++.|-. ..-+..++..... ..|+|||||+.+.+.
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK------~gDlaaiLt~Le~--~DVLFIDEIHrl~~~----- 118 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK------PGDLAAILTNLEE--GDVLFIDEIHRLSPA----- 118 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC------hhhHHHHHhcCCc--CCeEEEehhhhcChh-----
Confidence 579999999999999999999999999999999887732 2334444444333 369999999999642
Q ss_pred CCchhHHHHHHhhhhh--cc---CCcCC-------CCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHH
Q 002337 764 DSGGVMDRVVSQMLAE--ID---GLNDS-------SQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVL 831 (934)
Q Consensus 764 ~~~~~~~~v~~~lL~~--ld---g~~~~-------~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il 831 (934)
..+++...+.. +| |-..+ -..+-+||||.|...|-.-|+. ||-....+.. +..++-..|+
T Consensus 119 -----vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlef-Y~~~eL~~Iv 190 (332)
T COG2255 119 -----VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEF-YTVEELEEIV 190 (332)
T ss_pred -----HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeec-CCHHHHHHHH
Confidence 23344333221 11 11111 1247899999999999988888 9999999988 8899999999
Q ss_pred HHHHhcCCCCcCCC-HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhh
Q 002337 832 KALTRKFKLLEDVS-LYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLREL 910 (934)
Q Consensus 832 ~~~~~~~~~~~~~~-l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~ 910 (934)
+...+.+.+.-+.+ ..++|++ ..| |.+=-..|+++.--.|.-+ ....|+.+-..+||+.+
T Consensus 191 ~r~a~~l~i~i~~~~a~eIA~r-SRG-TPRIAnRLLrRVRDfa~V~-----------------~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 191 KRSAKILGIEIDEEAALEIARR-SRG-TPRIANRLLRRVRDFAQVK-----------------GDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHHhCCCCChHHHHHHHHh-ccC-CcHHHHHHHHHHHHHHHHh-----------------cCCcccHHHHHHHHHHh
Confidence 98888777654433 5677777 333 4443344554433333211 11246666667777766
Q ss_pred ---CCCcCHHHHHHHHHHHHHhccC
Q 002337 911 ---SPSLSMAELKKYELLRDQFEGS 932 (934)
Q Consensus 911 ---~psvs~~~l~~y~~~~~~~~~~ 932 (934)
.-.+..-+.+.++.+..+|.|+
T Consensus 252 ~Vd~~GLd~~D~k~L~~li~~f~Gg 276 (332)
T COG2255 252 DVDELGLDEIDRKYLRALIEQFGGG 276 (332)
T ss_pred CcccccccHHHHHHHHHHHHHhCCC
Confidence 3346777888888888888653
No 116
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.4e-11 Score=142.71 Aligned_cols=150 Identities=23% Similarity=0.391 Sum_probs=111.1
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCc------cccc---cccchhhhhhHHHHHHHHhCCCcEEEec
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP------ELIN---MYIGESEKNVRDIFQKARSARPCVIFFD 750 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~------~l~~---~~~Gese~~v~~lf~~A~~~~p~vlfiD 750 (934)
+-..+.-+.|+||||+|||+++|.||..++..|+.++-. ++-+ .|+|.....+-+-++......| +++||
T Consensus 434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiD 512 (906)
T KOG2004|consen 434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILID 512 (906)
T ss_pred ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEee
Confidence 334467788999999999999999999999999887742 3322 4999999999999999888888 88899
Q ss_pred cccccccCCCCCCCCchhHHHHHH--hhhhhccCC---cCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHH
Q 002337 751 ELDSLAPARGASGDSGGVMDRVVS--QMLAEIDGL---NDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVS 825 (934)
Q Consensus 751 Eid~l~~~r~~~~~~~~~~~~v~~--~lL~~ldg~---~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~ 825 (934)
|+|++. ++..||.+.++-+++. |=-+.+|-+ .-.-.+|++|||.|..+.|+++|+- |+. .|.++= +..+
T Consensus 513 EvDKlG--~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsG-Yv~e 586 (906)
T KOG2004|consen 513 EVDKLG--SGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSG-YVAE 586 (906)
T ss_pred hhhhhC--CCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hhh-eeeccC-ccHH
Confidence 999998 5666666543333321 111112211 1122469999999999999999998 885 677774 7788
Q ss_pred HHHHHHHHHHh
Q 002337 826 YRERVLKALTR 836 (934)
Q Consensus 826 ~r~~Il~~~~~ 836 (934)
++..|-+.++-
T Consensus 587 EKv~IA~~yLi 597 (906)
T KOG2004|consen 587 EKVKIAERYLI 597 (906)
T ss_pred HHHHHHHHhhh
Confidence 88888766653
No 117
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.28 E-value=4.1e-11 Score=141.45 Aligned_cols=168 Identities=18% Similarity=0.265 Sum_probs=110.9
Q ss_pred CcceecCCCCCcchHHHHHHHHHc-----CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCC
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR 759 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r 759 (934)
..++|||++|+|||+|++++++++ +..++++++.++...+.........+.|.+. -..+.+|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence 358999999999999999999876 5688999998888777654333333344432 2346899999999997543
Q ss_pred CCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCC----CCCChhhhCCCCcceeeeecC-CCCHHHHHHHHHHH
Q 002337 760 GASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP----DLIDPALLRPGRFDKLLYVGV-NSDVSYRERVLKAL 834 (934)
Q Consensus 760 ~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp----~~lD~allrpGRfd~~i~v~~-Pp~~~~r~~Il~~~ 834 (934)
. ..+.+-.+++.+ ...++. +|| |+|++ ..+++.|.+ ||...+.+.+ |||.+.|..||+.+
T Consensus 394 ~--------tqeeLF~l~N~l---~e~gk~-III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 394 S--------TQEEFFHTFNTL---HNANKQ-IVL-SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred H--------HHHHHHHHHHHH---HhcCCC-EEE-ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHH
Confidence 1 111222232222 222232 333 66664 357899998 9987775554 68999999999988
Q ss_pred HhcCCCCcCCC-HHHHHhhCCCCCCHHHHHHHHHHHH
Q 002337 835 TRKFKLLEDVS-LYSIAKKCPPNFTGADMYALCADAW 870 (934)
Q Consensus 835 ~~~~~~~~~~~-l~~la~~~t~g~sgaDl~~l~~~A~ 870 (934)
.+...+.-..+ +..|+.+. .=+-++|..++.+-.
T Consensus 459 a~~r~l~l~~eVi~yLa~r~--~rnvR~LegaL~rL~ 493 (617)
T PRK14086 459 AVQEQLNAPPEVLEFIASRI--SRNIRELEGALIRVT 493 (617)
T ss_pred HHhcCCCCCHHHHHHHHHhc--cCCHHHHHHHHHHHH
Confidence 87655433322 56777774 224567776666543
No 118
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.28 E-value=8.7e-11 Score=130.74 Aligned_cols=176 Identities=18% Similarity=0.221 Sum_probs=112.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCC
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNES 476 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~ 476 (934)
..+++|+||||||||++++++|++++.++..++++.+. ....+...+... ..+.++||||++.+.+..
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~------~~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~---- 97 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE------KPGDLAAILTNL--EEGDVLFIDEIHRLSPAV---- 97 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhc------CchhHHHHHHhc--ccCCEEEEehHhhhCHHH----
Confidence 45699999999999999999999999887766554221 112233333332 356899999999876411
Q ss_pred CCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHH
Q 002337 477 LPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQ 556 (934)
Q Consensus 477 ~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~ 556 (934)
...+..++.......... .++ .. ........++.+|++||++..+++++++||...+.+++|+.+
T Consensus 98 --------~e~l~~~~~~~~~~~v~~-----~~~-~~-~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~ 162 (305)
T TIGR00635 98 --------EELLYPAMEDFRLDIVIG-----KGP-SA-RSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVE 162 (305)
T ss_pred --------HHHhhHHHhhhheeeeec-----cCc-cc-cceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHH
Confidence 112222222211100000 000 00 000112345889999999999999999999888999999999
Q ss_pred HHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHH
Q 002337 557 QRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 557 ~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A 604 (934)
++.++++........ .. .+..++.++..+.|+. +.+..++..+
T Consensus 163 e~~~il~~~~~~~~~---~~-~~~al~~ia~~~~G~p-R~~~~ll~~~ 205 (305)
T TIGR00635 163 ELAEIVSRSAGLLNV---EI-EPEAALEIARRSRGTP-RIANRLLRRV 205 (305)
T ss_pred HHHHHHHHHHHHhCC---Cc-CHHHHHHHHHHhCCCc-chHHHHHHHH
Confidence 999999987754321 22 2455788888888855 5555566544
No 119
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.26 E-value=4.9e-11 Score=145.01 Aligned_cols=148 Identities=16% Similarity=0.269 Sum_probs=100.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccc------cccccchHH---HHHHHHHHhhcCCCEEEEEcchh
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLM------ASSERKTSA---ALAQAFNTAQSYSPTILLLRDFD 466 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~------~~~~g~~e~---~L~~~f~~A~~~~P~IL~IDEID 466 (934)
...++|+.||..+|||+++..+|++.|..|+.||.++.. +.|.....+ .-..++-+|.+ .+-+|++||+.
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR-~GyWIVLDELN 965 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR-RGYWIVLDELN 965 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh-cCcEEEeeccc
Confidence 345799999999999999999999999999999988633 222222111 11223334433 46799999997
Q ss_pred hccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCC------CChhh
Q 002337 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG------LPPTI 540 (934)
Q Consensus 467 ~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~------Ld~aL 540 (934)
|++ ..|..+|+++++... ..|..+.......+....+.||-|.|.. |..++
T Consensus 966 -LAp---------------TDVLEaLNRLLDDNR-------elfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAF 1022 (4600)
T COG5271 966 -LAP---------------TDVLEALNRLLDDNR-------ELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAF 1022 (4600)
T ss_pred -cCc---------------HHHHHHHHHhhcccc-------ceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHH
Confidence 444 478889999987532 1222222222334555666666676533 78999
Q ss_pred hcccceEEEcCCCCHHHHHHHHHHhccc
Q 002337 541 RRCFSHEISMGPLTEQQRVEMLSQLLQP 568 (934)
Q Consensus 541 rrrF~~eI~i~~Pde~~R~~IL~~ll~~ 568 (934)
|.||. +++|..-.+.+...||...++-
T Consensus 1023 RNRFl-E~hFddipedEle~ILh~rc~i 1049 (4600)
T COG5271 1023 RNRFL-EMHFDDIPEDELEEILHGRCEI 1049 (4600)
T ss_pred HhhhH-hhhcccCcHHHHHHHHhccCcc
Confidence 99997 8888877799999998876543
No 120
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.26 E-value=5e-11 Score=141.98 Aligned_cols=162 Identities=20% Similarity=0.301 Sum_probs=106.6
Q ss_pred ceecCCCCCcchHHHHHHHHHc----------CCcEEEecCccccccc----------cc-------hhhhhhHHHHHHH
Q 002337 687 VLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELINMY----------IG-------ESEKNVRDIFQKA 739 (934)
Q Consensus 687 iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~~~~----------~G-------ese~~v~~lf~~A 739 (934)
++++|+||||||++++.+..++ ...+++|+|..+...+ .| .+...+..+|...
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 4699999999999999997665 2567899996543321 11 1223456667654
Q ss_pred H--hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCC---CCCCChhhhCCCCcce
Q 002337 740 R--SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNR---PDLIDPALLRPGRFDK 814 (934)
Q Consensus 740 ~--~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNr---p~~lD~allrpGRfd~ 814 (934)
. .....||+|||||.|..+. +.++..|+.... . ....+.|||++|. ++.++|.+.+ ||..
T Consensus 864 ~k~~r~v~IIILDEID~L~kK~----------QDVLYnLFR~~~-~--s~SKLiLIGISNdlDLperLdPRLRS--RLg~ 928 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLITKT----------QKVLFTLFDWPT-K--INSKLVLIAISNTMDLPERLIPRCRS--RLAF 928 (1164)
T ss_pred hcccccceEEEeehHhhhCccH----------HHHHHHHHHHhh-c--cCCeEEEEEecCchhcchhhhhhhhh--cccc
Confidence 2 2345799999999997431 345666655433 1 2457999999986 4567888887 7754
Q ss_pred -eeeecCCCCHHHHHHHHHHHHhcCC-CCcCCCHHHHHhhCCCCCCHHHHHHHH
Q 002337 815 -LLYVGVNSDVSYRERVLKALTRKFK-LLEDVSLYSIAKKCPPNFTGADMYALC 866 (934)
Q Consensus 815 -~i~v~~Pp~~~~r~~Il~~~~~~~~-~~~~~~l~~la~~~t~g~sgaDl~~l~ 866 (934)
.|.|+ |++.++..+||+..+.... ...+.-+..+|+.. ...++|++.++
T Consensus 929 eeIvF~-PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkV--Aq~SGDARKAL 979 (1164)
T PTZ00112 929 GRLVFS-PYKGDEIEKIIKERLENCKEIIDHTAIQLCARKV--ANVSGDIRKAL 979 (1164)
T ss_pred ccccCC-CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhh--hhcCCHHHHHH
Confidence 36666 7999999999998887642 12222255566542 23345776543
No 121
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.26 E-value=7.4e-11 Score=136.76 Aligned_cols=125 Identities=27% Similarity=0.477 Sum_probs=91.2
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHH----hCCCcEEEeccccccccCC
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKAR----SARPCVIFFDELDSLAPAR 759 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~----~~~p~vlfiDEid~l~~~r 759 (934)
..+++|+||||||||++|+++|+..+..|+.+++... ....++.+++.++ .....||||||+|.+..
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~-- 106 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK-- 106 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--
Confidence 3589999999999999999999999999999987532 2345666777664 23568999999998852
Q ss_pred CCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcC--CCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhc
Q 002337 760 GASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASN--RPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRK 837 (934)
Q Consensus 760 ~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTN--rp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~ 837 (934)
...+.|+..++. ..+++|++|+ ....+++++++ |+ ..+.++ |++.++...+++..+..
T Consensus 107 -----------~~q~~LL~~le~-----~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~-~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 107 -----------AQQDALLPHVED-----GTITLIGATTENPSFEVNPALLS--RA-QVFELK-PLSEEDIEQLLKRALED 166 (413)
T ss_pred -----------HHHHHHHHHhhc-----CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeC-CCCHHHHHHHHHHHHHH
Confidence 223445555442 3567777653 33478999999 98 667777 47778888888776654
No 122
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.24 E-value=5.5e-11 Score=138.45 Aligned_cols=167 Identities=19% Similarity=0.316 Sum_probs=106.0
Q ss_pred CcceecCCCCCcchHHHHHHHHHc-----CCcEEEecCccccccccchhh-hhhHHHHHHHHhCCCcEEEeccccccccC
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESE-KNVRDIFQKARSARPCVIFFDELDSLAPA 758 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~~Gese-~~v~~lf~~A~~~~p~vlfiDEid~l~~~ 758 (934)
.+++||||+|+|||+|++++++++ +..++++++.++...+...-. ..+.. |.......+.+|+|||++.+.++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999875 467889998887665543221 12222 33222235789999999998643
Q ss_pred CCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCC---CChhhhCCCCcceee--eecCCCCHHHHHHHHHH
Q 002337 759 RGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL---IDPALLRPGRFDKLL--YVGVNSDVSYRERVLKA 833 (934)
Q Consensus 759 r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~---lD~allrpGRfd~~i--~v~~Pp~~~~r~~Il~~ 833 (934)
.+ ....+. ..++.+... +..+||++.+.|.. +++.+.+ ||...+ .+. |||.+.|..|++.
T Consensus 210 ~~-------~q~elf----~~~n~l~~~-~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~-~pd~e~r~~IL~~ 274 (440)
T PRK14088 210 TG-------VQTELF----HTFNELHDS-GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLE-PPDEETRKKIARK 274 (440)
T ss_pred HH-------HHHHHH----HHHHHHHHc-CCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeC-CCCHHHHHHHHHH
Confidence 21 111222 222222222 23456655566654 4577887 886544 455 6999999999998
Q ss_pred HHhcC--CCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHH
Q 002337 834 LTRKF--KLLEDVSLYSIAKKCPPNFTGADMYALCADAW 870 (934)
Q Consensus 834 ~~~~~--~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~ 870 (934)
..+.. .+.+++ +..||++. .-+.++|..++.+-.
T Consensus 275 ~~~~~~~~l~~ev-~~~Ia~~~--~~~~R~L~g~l~~l~ 310 (440)
T PRK14088 275 MLEIEHGELPEEV-LNFVAENV--DDNLRRLRGAIIKLL 310 (440)
T ss_pred HHHhcCCCCCHHH-HHHHHhcc--ccCHHHHHHHHHHHH
Confidence 88754 343333 67777773 335567777666543
No 123
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.24 E-value=1.2e-11 Score=145.43 Aligned_cols=54 Identities=26% Similarity=0.303 Sum_probs=46.8
Q ss_pred eEEEcCCCCHHHHHHHHHHhccccccc-------cCCCCchHHHHHHHhhcCC---CChHHHHHHHH
Q 002337 546 HEISMGPLTEQQRVEMLSQLLQPVSEL-------TSDTGSEEFVKDIIGQTSG---FMPRDLHALVA 602 (934)
Q Consensus 546 ~eI~i~~Pde~~R~~IL~~ll~~~~~l-------~~d~~~~~~L~~la~~t~G---fv~~DL~~L~~ 602 (934)
.+++.| ++.|..+.+.++.+++.+ |+|.....||+++...+.| +++||..+|..
T Consensus 152 ~~LSGG---~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~ 215 (530)
T COG0488 152 SSLSGG---WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDN 215 (530)
T ss_pred hhcCHH---HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHH
Confidence 478888 999999999999888766 6667778999999999999 78999999873
No 124
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=9.4e-11 Score=136.88 Aligned_cols=149 Identities=21% Similarity=0.312 Sum_probs=110.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcccc---------ccccchHHHHHHHHHHhhcCCCEEEEEcchhhc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA---------SSERKTSAALAQAFNTAQSYSPTILLLRDFDVF 468 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~---------~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L 468 (934)
.=++|+||||+|||+|++.||+.+|..|+.++...+.. .|.|...+++-|....|....| +++|||||.+
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm 429 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKM 429 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhc
Confidence 34789999999999999999999999999998764332 3557777888888888887777 5569999999
Q ss_pred cccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEE
Q 002337 469 RNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEI 548 (934)
Q Consensus 469 ~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI 548 (934)
.... . ..-.++|.+.+++.....+... + ......-..|++|+|+|..+.||..|+.|.. .|
T Consensus 430 ~ss~--r----------GDPaSALLEVLDPEQN~~F~Dh----Y--Lev~yDLS~VmFiaTANsl~tIP~PLlDRME-iI 490 (782)
T COG0466 430 GSSF--R----------GDPASALLEVLDPEQNNTFSDH----Y--LEVPYDLSKVMFIATANSLDTIPAPLLDRME-VI 490 (782)
T ss_pred cCCC--C----------CChHHHHHhhcCHhhcCchhhc----c--ccCccchhheEEEeecCccccCChHHhccee-ee
Confidence 7621 1 1223445555554222111100 0 1111124579999999999999999999996 89
Q ss_pred EcCCCCHHHHHHHHHHhc
Q 002337 549 SMGPLTEQQRVEMLSQLL 566 (934)
Q Consensus 549 ~i~~Pde~~R~~IL~~ll 566 (934)
.+.-+++.+.++|.+.|+
T Consensus 491 ~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 491 RLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eecCCChHHHHHHHHHhc
Confidence 999999999999999887
No 125
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.23 E-value=1.1e-10 Score=135.51 Aligned_cols=204 Identities=13% Similarity=0.202 Sum_probs=121.4
Q ss_pred CcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCC
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGA 761 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~ 761 (934)
.+++||||+|+|||+|++++++++ +..++++++.++...+...-...-.+.|.... ..+.+|+|||++.+.++..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~- 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA- 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-
Confidence 579999999999999999999875 67889998877765443322111122344322 3567999999999864321
Q ss_pred CCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC---CCChhhhCCCCcceeeeecC-CCCHHHHHHHHHHHHhc
Q 002337 762 SGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD---LIDPALLRPGRFDKLLYVGV-NSDVSYRERVLKALTRK 837 (934)
Q Consensus 762 ~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~---~lD~allrpGRfd~~i~v~~-Pp~~~~r~~Il~~~~~~ 837 (934)
.....-.+++.+.. . +..+|+++++.|. .+++.|.+ ||...+.+++ ||+.+.|..|++...+.
T Consensus 220 ---~qeelf~l~N~l~~-------~-~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 220 ---TQEEFFHTFNSLHT-------E-GKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred ---hHHHHHHHHHHHHH-------C-CCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 11111122233321 1 2345554444454 56789998 9975555544 68999999999988877
Q ss_pred CCCCcCCC-HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhh---CC-
Q 002337 838 FKLLEDVS-LYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLREL---SP- 912 (934)
Q Consensus 838 ~~~~~~~~-l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~---~p- 912 (934)
.++.-+.+ ++.+|.+. .-+.++|.+.+...+...+...+ ...+|+.++.+++++.+ .+
T Consensus 287 ~~~~l~~evl~~la~~~--~~dir~L~g~l~~l~~~~a~~~~---------------~~~~i~~~~~~~~l~~~~~~~~~ 349 (445)
T PRK12422 287 LSIRIEETALDFLIEAL--SSNVKSLLHALTLLAKRVAYKKL---------------SHQLLYVDDIKALLHDVLEAAES 349 (445)
T ss_pred cCCCCCHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHh---------------hCCCCCHHHHHHHHHHhhhcccC
Confidence 65432222 45577764 22445555555544322121111 11247777888887754 22
Q ss_pred -CcCHHHHH
Q 002337 913 -SLSMAELK 920 (934)
Q Consensus 913 -svs~~~l~ 920 (934)
.+|.+++.
T Consensus 350 ~~~t~~~I~ 358 (445)
T PRK12422 350 VRLTPSKII 358 (445)
T ss_pred CCCCHHHHH
Confidence 35666554
No 126
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.22 E-value=8.9e-10 Score=125.74 Aligned_cols=204 Identities=19% Similarity=0.269 Sum_probs=120.1
Q ss_pred CcCCchHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhC---------CcEEEEecCcccccc-
Q 002337 368 FVPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLG---------IHVVEYSCHNLMASS- 437 (934)
Q Consensus 368 ~~~~~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg---------~~~~~I~~~~L~~~~- 437 (934)
..+.+ +..+.|...+.+.+.. ..+.+++++||||||||++++++++++. ..++.++|....+..
T Consensus 17 l~gRe-~e~~~l~~~l~~~~~~-----~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 17 IVHRD-EQIEELAKALRPILRG-----SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCcH-HHHHHHHHHHHHHHcC-----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 33443 4455666666655442 2345699999999999999999998763 568889987543210
Q ss_pred ------------------cc-chHHHHHHHHHHhh-cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcC
Q 002337 438 ------------------ER-KTSAALAQAFNTAQ-SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTE 497 (934)
Q Consensus 438 ------------------~g-~~e~~L~~~f~~A~-~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~ 497 (934)
.+ .....+..++.... ...+.+++|||+|.+... . .++...|.++.+
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~-----~~~L~~l~~~~~ 157 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------D-----DDLLYQLSRARS 157 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------C-----cHHHHhHhcccc
Confidence 00 01223344444433 345789999999998631 0 112222212210
Q ss_pred CCccccccccCCCCchhhhhhhhcccEEEEEecCCCC---CCChhhhcccc-eEEEcCCCCHHHHHHHHHHhcccc-ccc
Q 002337 498 PSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE---GLPPTIRRCFS-HEISMGPLTEQQRVEMLSQLLQPV-SEL 572 (934)
Q Consensus 498 ~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~---~Ld~aLrrrF~-~eI~i~~Pde~~R~~IL~~ll~~~-~~l 572 (934)
.......++.+|+++|.++ .+++.+.++|. +.+.+++++.++..+|++..++.. ...
T Consensus 158 ------------------~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~ 219 (365)
T TIGR02928 158 ------------------NGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDG 219 (365)
T ss_pred ------------------ccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCC
Confidence 0011246789999998875 47888888875 679999999999999999887521 100
Q ss_pred cCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 002337 573 TSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLI 609 (934)
Q Consensus 573 ~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai 609 (934)
..+.+....+..++..+.|.. +....+++.|...+.
T Consensus 220 ~~~~~~l~~i~~~~~~~~Gd~-R~al~~l~~a~~~a~ 255 (365)
T TIGR02928 220 VLDDGVIPLCAALAAQEHGDA-RKAIDLLRVAGEIAE 255 (365)
T ss_pred CCChhHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHH
Confidence 001111123344455555542 333446666665554
No 127
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=9e-11 Score=136.05 Aligned_cols=197 Identities=14% Similarity=0.313 Sum_probs=130.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcccc---------ccccchHHHHHHHHHHhhcCCCEEEEEcch
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA---------SSERKTSAALAQAFNTAQSYSPTILLLRDF 465 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~---------~~~g~~e~~L~~~f~~A~~~~P~IL~IDEI 465 (934)
..+.=+.|+||||+|||+++|.||+.+|..|+.++...+.. .|.|...+++-+.+....-+.| +++|||+
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEv 514 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEV 514 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehh
Confidence 44566899999999999999999999999999998764432 3556677778888888776666 5569999
Q ss_pred hhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccc
Q 002337 466 DVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFS 545 (934)
Q Consensus 466 D~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~ 545 (934)
|.+.. +. ...-.+.|.+++++.... .|.....+--..-.+|++|+|+|..+.||+.|+.|..
T Consensus 515 DKlG~--g~----------qGDPasALLElLDPEQNa------nFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRME 576 (906)
T KOG2004|consen 515 DKLGS--GH----------QGDPASALLELLDPEQNA------NFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRME 576 (906)
T ss_pred hhhCC--CC----------CCChHHHHHHhcChhhcc------chhhhccccccchhheEEEEeccccccCChhhhhhhh
Confidence 99974 11 122344555666542111 1111111112234689999999999999999999996
Q ss_pred eEEEcCCCCHHHHHHHHHHhccccc-----cc--cCCCCchHHHHHHHhhcC---CC--ChHHHHHHHHHHHHHHHHhh
Q 002337 546 HEISMGPLTEQQRVEMLSQLLQPVS-----EL--TSDTGSEEFVKDIIGQTS---GF--MPRDLHALVADAGANLIRKS 612 (934)
Q Consensus 546 ~eI~i~~Pde~~R~~IL~~ll~~~~-----~l--~~d~~~~~~L~~la~~t~---Gf--v~~DL~~L~~~A~~~ai~r~ 612 (934)
.|+++-+..++...|.+.++-... .- +.++. +..+..+.+++- |. .-..+..+|+.++.+..+..
T Consensus 577 -vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is-~~al~~lI~~YcrEaGVRnLqk~iekI~Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 577 -VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKIS-DDALLALIERYCREAGVRNLQKQIEKICRKVALKVVEGE 653 (906)
T ss_pred -eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCcc-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999998873211 10 11111 333444444432 21 22456667776666655543
No 128
>PRK06893 DNA replication initiation factor; Validated
Probab=99.22 E-value=9.1e-11 Score=125.19 Aligned_cols=158 Identities=13% Similarity=0.211 Sum_probs=95.2
Q ss_pred CcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCC
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGA 761 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~ 761 (934)
..++||||||||||++++++|++. +....+++..+. .....++++..+ ...+|+|||++.+.+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCChH-
Confidence 357999999999999999999875 234444443211 111123344333 457999999999864321
Q ss_pred CCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCC---hhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcC
Q 002337 762 SGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLID---PALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF 838 (934)
Q Consensus 762 ~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD---~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~ 838 (934)
....+-.+++. ....++.++|++++..|..++ |.|.+..++...+.++ ||+.+.|.+|++......
T Consensus 109 -------~~~~l~~l~n~---~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~-~pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 109 -------WELAIFDLFNR---IKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLN-DLTDEQKIIVLQRNAYQR 177 (229)
T ss_pred -------HHHHHHHHHHH---HHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCC-CCCHHHHHHHHHHHHHHc
Confidence 12233333333 222234466676777777554 8898833334567777 589999999998776544
Q ss_pred C--CCcCCCHHHHHhhCCCCCCHHHHHHHHH
Q 002337 839 K--LLEDVSLYSIAKKCPPNFTGADMYALCA 867 (934)
Q Consensus 839 ~--~~~~~~l~~la~~~t~g~sgaDl~~l~~ 867 (934)
. +.+++ +..|++++ +=+.+.+.+++.
T Consensus 178 ~l~l~~~v-~~~L~~~~--~~d~r~l~~~l~ 205 (229)
T PRK06893 178 GIELSDEV-ANFLLKRL--DRDMHTLFDALD 205 (229)
T ss_pred CCCCCHHH-HHHHHHhc--cCCHHHHHHHHH
Confidence 3 33333 66778774 223444444444
No 129
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.21 E-value=2.1e-10 Score=129.33 Aligned_cols=144 Identities=27% Similarity=0.472 Sum_probs=111.5
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccc-cccc-hhhhhhHHHHHHHH--------------------
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN-MYIG-ESEKNVRDIFQKAR-------------------- 740 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~-~~~G-ese~~v~~lf~~A~-------------------- 740 (934)
++.++||+||||||||++|+++|..++.+|+.++++++.. .|+| +.+..++.+|..|.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae 125 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAE 125 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4689999999999999999999999999999999998874 7988 56777888877760
Q ss_pred --------------------------------------------------------------------------------
Q 002337 741 -------------------------------------------------------------------------------- 740 (934)
Q Consensus 741 -------------------------------------------------------------------------------- 740 (934)
T Consensus 126 ~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (441)
T TIGR00390 126 ERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLG 205 (441)
T ss_pred HHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhc
Confidence
Q ss_pred ---------------------------------------hCCCcEEEeccccccccCCCC-CCCCchhHHHHHHhhhhhc
Q 002337 741 ---------------------------------------SARPCVIFFDELDSLAPARGA-SGDSGGVMDRVVSQMLAEI 780 (934)
Q Consensus 741 ---------------------------------------~~~p~vlfiDEid~l~~~r~~-~~~~~~~~~~v~~~lL~~l 780 (934)
...-.||||||||+++.+.++ ..|.++ ..|...||..|
T Consensus 206 ~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~--eGVQ~~LLkil 283 (441)
T TIGR00390 206 GQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGESSGADVSR--EGVQRDLLPIV 283 (441)
T ss_pred CCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccCCCCCCCCCc--cchhccccccc
Confidence 123459999999999976532 122222 34889999999
Q ss_pred cCCcC-------CCCCEEEEEEc----CCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHH
Q 002337 781 DGLND-------SSQDLFIIGAS----NRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVL 831 (934)
Q Consensus 781 dg~~~-------~~~~v~vI~aT----Nrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il 831 (934)
+|-.- ...++++|++- ..|..|=|.|. |||...+.+. |.+.+.-.+||
T Consensus 284 EGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~-~L~~edL~rIL 342 (441)
T TIGR00390 284 EGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVELQ-ALTTDDFERIL 342 (441)
T ss_pred cCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECC-CCCHHHHHHHh
Confidence 98421 23568888764 35666778886 5999999998 58888888887
No 130
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.8e-10 Score=133.05 Aligned_cols=145 Identities=25% Similarity=0.360 Sum_probs=109.9
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecC------ccccc---cccchhhhhhHHHHHHHHhCCCcEEEeccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKG------PELIN---MYIGESEKNVRDIFQKARSARPCVIFFDELDS 754 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~------~~l~~---~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~ 754 (934)
+.-++|+||||+|||++++.+|+.++..|+.++- +++-+ .|+|.....+-+-.++|....| ++++||||.
T Consensus 350 GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDK 428 (782)
T COG0466 350 GPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDK 428 (782)
T ss_pred CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhh
Confidence 4567899999999999999999999999998874 23333 4999999999999999998888 888999999
Q ss_pred cccCCCCCCCCchhHHHHHH--hhhhhccCC---cCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHH
Q 002337 755 LAPARGASGDSGGVMDRVVS--QMLAEIDGL---NDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRER 829 (934)
Q Consensus 755 l~~~r~~~~~~~~~~~~v~~--~lL~~ldg~---~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~ 829 (934)
+... ..||.++++-+|+. |=-+..|-+ .-.-.+|++|+|+|..+.|+..|+- |+. .|.+.= +.+++..+
T Consensus 429 m~ss--~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsg-Yt~~EKl~ 502 (782)
T COG0466 429 MGSS--FRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSG-YTEDEKLE 502 (782)
T ss_pred ccCC--CCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--cee-eeeecC-CChHHHHH
Confidence 9754 34555544444431 111112211 1123579999999999999999998 885 677874 88999999
Q ss_pred HHHHHH
Q 002337 830 VLKALT 835 (934)
Q Consensus 830 Il~~~~ 835 (934)
|-+.++
T Consensus 503 IAk~~L 508 (782)
T COG0466 503 IAKRHL 508 (782)
T ss_pred HHHHhc
Confidence 987665
No 131
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.17 E-value=2.9e-10 Score=128.23 Aligned_cols=143 Identities=25% Similarity=0.459 Sum_probs=111.4
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccc-cccc-hhhhhhHHHHHHHH---------------------
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN-MYIG-ESEKNVRDIFQKAR--------------------- 740 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~-~~~G-ese~~v~~lf~~A~--------------------- 740 (934)
+.++||+||||||||++|+++|..++.+|+.++++++.. .|+| ..+..++++|+.|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ 129 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEE 129 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999998885 6999 55677888877771
Q ss_pred -------------------------------------------------h------------------------------
Q 002337 741 -------------------------------------------------S------------------------------ 741 (934)
Q Consensus 741 -------------------------------------------------~------------------------------ 741 (934)
.
T Consensus 130 ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (443)
T PRK05201 130 RILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPK 209 (443)
T ss_pred HHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCC
Confidence 0
Q ss_pred --------------------------------------CCCcEEEeccccccccCCCCC-CCCchhHHHHHHhhhhhccC
Q 002337 742 --------------------------------------ARPCVIFFDELDSLAPARGAS-GDSGGVMDRVVSQMLAEIDG 782 (934)
Q Consensus 742 --------------------------------------~~p~vlfiDEid~l~~~r~~~-~~~~~~~~~v~~~lL~~ldg 782 (934)
..-.||||||||+|+.+.+++ .+.++ ..|...||..|+|
T Consensus 210 ~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~--eGVQ~~LLki~EG 287 (443)
T PRK05201 210 KKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGSSGPDVSR--EGVQRDLLPLVEG 287 (443)
T ss_pred CCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCCCCCCCCc--cchhccccccccc
Confidence 123599999999999775422 12221 3488999999998
Q ss_pred CcC-------CCCCEEEEEEc----CCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHH
Q 002337 783 LND-------SSQDLFIIGAS----NRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVL 831 (934)
Q Consensus 783 ~~~-------~~~~v~vI~aT----Nrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il 831 (934)
-.- ...+|++|++- ..|..|-|+|.- ||..++.+. |.+.+.-.+||
T Consensus 288 ~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~-~L~~~dL~~IL 344 (443)
T PRK05201 288 STVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELD-ALTEEDFVRIL 344 (443)
T ss_pred ceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECC-CCCHHHHHHHh
Confidence 421 23568888754 456677788875 999999998 58888888888
No 132
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=6.2e-10 Score=126.08 Aligned_cols=176 Identities=22% Similarity=0.261 Sum_probs=118.1
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCc-----EEEecCccccccc---------------cchhhh-hhHHHHHHHHh-
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLN-----FLSVKGPELINMY---------------IGESEK-NVRDIFQKARS- 741 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~-----~i~v~~~~l~~~~---------------~Gese~-~v~~lf~~A~~- 741 (934)
|.++++|||||||||.+++.++.++.-. +++|||...-+.| .|-+.. ....+++....
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~ 121 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKK 121 (366)
T ss_pred CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhc
Confidence 4579999999999999999999887443 8999996654432 122221 23333333333
Q ss_pred CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC---CCChhhhCCCCc-ceeee
Q 002337 742 ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD---LIDPALLRPGRF-DKLLY 817 (934)
Q Consensus 742 ~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~---~lD~allrpGRf-d~~i~ 817 (934)
...-||++||+|.|..+.+ .++..|+...+.. ..+|.+|+.+|..+ .+||.+.+ || ...|.
T Consensus 122 ~~~~IvvLDEid~L~~~~~----------~~LY~L~r~~~~~---~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~ 186 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG----------EVLYSLLRAPGEN---KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIV 186 (366)
T ss_pred CCeEEEEEcchhhhccccc----------hHHHHHHhhcccc---ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceee
Confidence 4567999999999985532 5778887765544 46789999999875 78888887 65 44588
Q ss_pred ecCCCCHHHHHHHHHHHHhcCCCC--cCCC-HHHHHhhCCCCCCHHHHH---HHHHHHHHHHHHHH
Q 002337 818 VGVNSDVSYRERVLKALTRKFKLL--EDVS-LYSIAKKCPPNFTGADMY---ALCADAWFHAAKRK 877 (934)
Q Consensus 818 v~~Pp~~~~r~~Il~~~~~~~~~~--~~~~-l~~la~~~t~g~sgaDl~---~l~~~A~~~A~~r~ 877 (934)
|+ |++.++-.+|++...+..-.. -+-+ +.-+|+. .+..++|.+ .+|+.|+..|-++.
T Consensus 187 F~-pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~--~a~~~GDAR~aidilr~A~eiAe~~~ 249 (366)
T COG1474 187 FP-PYTAEELYDILRERVEEGFSAGVIDDDVLKLIAAL--VAAESGDARKAIDILRRAGEIAEREG 249 (366)
T ss_pred eC-CCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHH--HHHcCccHHHHHHHHHHHHHHHHhhC
Confidence 88 699999999998887743111 1112 3333322 233333544 67888888887653
No 133
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.16 E-value=2.7e-09 Score=123.17 Aligned_cols=197 Identities=20% Similarity=0.210 Sum_probs=118.5
Q ss_pred HHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEecCccccc----------c-
Q 002337 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMAS----------S- 437 (934)
Q Consensus 374 ~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~el-----g~~~~~I~~~~L~~~----------~- 437 (934)
+..+.+...+.+.+.. ..+.+++++||||+|||++++.+++++ +..++.++|....+. .
T Consensus 37 ~e~~~l~~~l~~~~~~-----~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 111 (394)
T PRK00411 37 EQIEELAFALRPALRG-----SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLF 111 (394)
T ss_pred HHHHHHHHHHHHHhCC-----CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhc
Confidence 3445666666554432 233568999999999999999999987 577889999753221 0
Q ss_pred ------cc-chHHHHHHHHHHhh-cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCC
Q 002337 438 ------ER-KTSAALAQAFNTAQ-SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHG 509 (934)
Q Consensus 438 ------~g-~~e~~L~~~f~~A~-~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g 509 (934)
.+ .....+..+.+... ...+.+|+|||+|.+... . ....+..++ ++..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~---~--------~~~~l~~l~-~~~~~----------- 168 (394)
T PRK00411 112 GHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEK---E--------GNDVLYSLL-RAHEE----------- 168 (394)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhcc---C--------CchHHHHHH-Hhhhc-----------
Confidence 01 11223333333333 235689999999988621 0 011222222 22111
Q ss_pred CCchhhhhhhhcccEEEEEecCCCC---CCChhhhcccc-eEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHH
Q 002337 510 YFPVKEIEKICRQQVLLVAAADSSE---GLPPTIRRCFS-HEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDI 585 (934)
Q Consensus 510 ~~~~~~~~~~~~~~ViVIatTn~~~---~Ld~aLrrrF~-~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~l 585 (934)
....++.+|+++|..+ .+++.++++|. ..+.+++++.++..+|++..++.. +..+.-.+..++.+
T Consensus 169 ---------~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i 237 (394)
T PRK00411 169 ---------YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG--FYPGVVDDEVLDLI 237 (394)
T ss_pred ---------cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh--cccCCCCHhHHHHH
Confidence 0123678888887663 47788877764 578999999999999999887431 11122335556777
Q ss_pred HhhcCCCC--hHHHHHHHHHHHHHHH
Q 002337 586 IGQTSGFM--PRDLHALVADAGANLI 609 (934)
Q Consensus 586 a~~t~Gfv--~~DL~~L~~~A~~~ai 609 (934)
++.+.+.. .+....++..|...+.
T Consensus 238 ~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 238 ADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 77664422 2333456666655443
No 134
>PRK04195 replication factor C large subunit; Provisional
Probab=99.15 E-value=3e-10 Score=134.26 Aligned_cols=159 Identities=26% Similarity=0.311 Sum_probs=107.3
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHh------CCCcEEEecccccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARS------ARPCVIFFDELDSLAP 757 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~------~~p~vlfiDEid~l~~ 757 (934)
+.++||+||||||||++|+++|++++.+++.+++++..+. ..++.+...+.. ..+.+|+|||+|.+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHG 112 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccc
Confidence 6789999999999999999999999999999998764321 223333333322 2567999999999964
Q ss_pred CCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCCh-hhhCCCCcceeeeecCCCCHHHHHHHHHHHHh
Q 002337 758 ARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDP-ALLRPGRFDKLLYVGVNSDVSYRERVLKALTR 836 (934)
Q Consensus 758 ~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~-allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~ 836 (934)
+. +. ..++.|+..++.. +..+|.++|.+..+++ .+++ ....|.|+. ++.++...+++..++
T Consensus 113 ~~----d~-----~~~~aL~~~l~~~-----~~~iIli~n~~~~~~~k~Lrs---r~~~I~f~~-~~~~~i~~~L~~i~~ 174 (482)
T PRK04195 113 NE----DR-----GGARAILELIKKA-----KQPIILTANDPYDPSLRELRN---ACLMIEFKR-LSTRSIVPVLKRICR 174 (482)
T ss_pred cc----ch-----hHHHHHHHHHHcC-----CCCEEEeccCccccchhhHhc---cceEEEecC-CCHHHHHHHHHHHHH
Confidence 21 11 1234444444421 2345567888888887 4544 446788984 778888888888877
Q ss_pred cCCCCc-CCCHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 002337 837 KFKLLE-DVSLYSIAKKCPPNFTGADMYALCADAWF 871 (934)
Q Consensus 837 ~~~~~~-~~~l~~la~~~t~g~sgaDl~~l~~~A~~ 871 (934)
+.++.- +..+..|++. +++|++.+++....
T Consensus 175 ~egi~i~~eaL~~Ia~~-----s~GDlR~ain~Lq~ 205 (482)
T PRK04195 175 KEGIECDDEALKEIAER-----SGGDLRSAINDLQA 205 (482)
T ss_pred HcCCCCCHHHHHHHHHH-----cCCCHHHHHHHHHH
Confidence 654422 2336677776 35688888776544
No 135
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=4.8e-10 Score=131.03 Aligned_cols=143 Identities=17% Similarity=0.290 Sum_probs=96.4
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC------------------------cEEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL------------------------NFLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~------------------------~~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+..+||+||||||||++|+++|+.++. .++.++++. ...-..+|++.+.+
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~ 109 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAV 109 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHH
Confidence 456899999999999999999998754 344444321 01123456666655
Q ss_pred Hh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 RS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
+. ....||||||+|.+. ....+.||..|+.. ...+++|++|+.|..+++++++ |+. .
T Consensus 110 ~~~p~~~~~kVvIIDE~h~Lt-------------~~a~~~LLk~LE~p---~~~vv~Ilattn~~kl~~~L~S--R~~-v 170 (472)
T PRK14962 110 GYRPMEGKYKVYIIDEVHMLT-------------KEAFNALLKTLEEP---PSHVVFVLATTNLEKVPPTIIS--RCQ-V 170 (472)
T ss_pred hhChhcCCeEEEEEEChHHhH-------------HHHHHHHHHHHHhC---CCcEEEEEEeCChHhhhHHHhc--CcE-E
Confidence 43 234699999999884 22456677776654 2456677777778899999998 884 6
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCC-cCCCHHHHHhh
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKK 852 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~ 852 (934)
+.+. |++.++...+++...+..++. .+..+..+++.
T Consensus 171 v~f~-~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~ 207 (472)
T PRK14962 171 IEFR-NISDELIIKRLQEVAEAEGIEIDREALSFIAKR 207 (472)
T ss_pred EEEC-CccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7787 477777888887776654332 12236677776
No 136
>PRK04195 replication factor C large subunit; Provisional
Probab=99.14 E-value=1e-09 Score=129.69 Aligned_cols=177 Identities=20% Similarity=0.297 Sum_probs=116.4
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHh
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTA 452 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A 452 (934)
.+..+.+..++....+. .++.++||+|||||||||+|+++|++++.+++++++++... ...++.....+
T Consensus 20 ~~~~~~l~~~l~~~~~g-----~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~------~~~i~~~i~~~ 88 (482)
T PRK04195 20 EKAKEQLREWIESWLKG-----KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT------ADVIERVAGEA 88 (482)
T ss_pred HHHHHHHHHHHHHHhcC-----CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc------HHHHHHHHHHh
Confidence 35566777766544321 23678999999999999999999999999999999876332 22334433333
Q ss_pred hc------CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEE
Q 002337 453 QS------YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLL 526 (934)
Q Consensus 453 ~~------~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViV 526 (934)
.. ..+.+|+|||+|.+.... + .+....+ ..++. ..+..+
T Consensus 89 ~~~~sl~~~~~kvIiIDEaD~L~~~~-------d-~~~~~aL----~~~l~-----------------------~~~~~i 133 (482)
T PRK04195 89 ATSGSLFGARRKLILLDEVDGIHGNE-------D-RGGARAI----LELIK-----------------------KAKQPI 133 (482)
T ss_pred hccCcccCCCCeEEEEecCccccccc-------c-hhHHHHH----HHHHH-----------------------cCCCCE
Confidence 22 246899999999886411 1 1111222 22221 122345
Q ss_pred EEecCCCCCCCh-hhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHH
Q 002337 527 VAAADSSEGLPP-TIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 527 IatTn~~~~Ld~-aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A 604 (934)
|.+||.+..+++ .+++++ ..+.++.|+..++..+++..+..... .++ ...++.++..+.| |++.++...
T Consensus 134 Ili~n~~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi---~i~-~eaL~~Ia~~s~G----DlR~ain~L 203 (482)
T PRK04195 134 ILTANDPYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGI---ECD-DEALKEIAERSGG----DLRSAINDL 203 (482)
T ss_pred EEeccCccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC----CHHHHHHHH
Confidence 667788888877 676666 48999999999999999988765432 222 4567888887654 666655543
No 137
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.14 E-value=4e-10 Score=131.45 Aligned_cols=171 Identities=15% Similarity=0.255 Sum_probs=111.6
Q ss_pred CcceecCCCCCcchHHHHHHHHHc-----CCcEEEecCccccccccchhhh---hhHHHHHHHHhCCCcEEEeccccccc
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESEK---NVRDIFQKARSARPCVIFFDELDSLA 756 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~~Gese~---~v~~lf~~A~~~~p~vlfiDEid~l~ 756 (934)
.+++|||++|+|||+|++++++++ +..++++++.++...+...-.. .+.+..+.. ..+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 579999999999999999999854 4678999998887766543222 222222222 356799999999886
Q ss_pred cCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCC-C---CCChhhhCCCCcceeeeecC-CCCHHHHHHHH
Q 002337 757 PARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP-D---LIDPALLRPGRFDKLLYVGV-NSDVSYRERVL 831 (934)
Q Consensus 757 ~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp-~---~lD~allrpGRfd~~i~v~~-Pp~~~~r~~Il 831 (934)
.+.. ....+-.+++.+ ...++ -+|+ |+|++ . .+++.|.+ ||..-+.+++ ||+.+.|.+|+
T Consensus 220 ~k~~--------~~e~lf~l~N~~---~~~~k-~iIl-tsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 220 YKEK--------TNEIFFTIFNNF---IENDK-QLFF-SSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred CCHH--------HHHHHHHHHHHH---HHcCC-cEEE-ECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHH
Confidence 4321 122222333322 22222 3344 55544 3 46789998 9987777776 78999999999
Q ss_pred HHHHhcCCC---CcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHH
Q 002337 832 KALTRKFKL---LEDVSLYSIAKKCPPNFTGADMYALCADAWFHAA 874 (934)
Q Consensus 832 ~~~~~~~~~---~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~ 874 (934)
+..++..++ .++.-+..||..+ +-+.+.|.++|.++...|.
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~~--~gd~R~L~gaL~~l~~~a~ 328 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNYY--SDDVRKIKGSVSRLNFWSQ 328 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHh
Confidence 988876542 2222356777773 3466788888877665444
No 138
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.13 E-value=4.7e-10 Score=126.42 Aligned_cols=162 Identities=21% Similarity=0.262 Sum_probs=100.5
Q ss_pred CcceecCCCCCcchHHHHHHHHHcC-----CcEEEecCccccccc-------------cch-------hhhhhHHHHHHH
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECS-----LNFLSVKGPELINMY-------------IGE-------SEKNVRDIFQKA 739 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~-----~~~i~v~~~~l~~~~-------------~Ge-------se~~v~~lf~~A 739 (934)
.+++|+||||||||++|+++++++. .+++++++.++...+ .+. ....++.+.+..
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEY 116 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHH
Confidence 3699999999999999999999873 357888887654321 111 012233333333
Q ss_pred Hh-----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcce
Q 002337 740 RS-----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDK 814 (934)
Q Consensus 740 ~~-----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~ 814 (934)
.. ..+.+|+|||+|.+.. ...+.|+..++.... ... +|.+|+.+..+.+.+.+ |+ .
T Consensus 117 ~~~~~~~~~~~vlilDe~~~l~~-------------~~~~~L~~~le~~~~--~~~-~Il~~~~~~~~~~~L~s--r~-~ 177 (337)
T PRK12402 117 ASYRPLSADYKTILLDNAEALRE-------------DAQQALRRIMEQYSR--TCR-FIIATRQPSKLIPPIRS--RC-L 177 (337)
T ss_pred HhcCCCCCCCcEEEEeCcccCCH-------------HHHHHHHHHHHhccC--CCe-EEEEeCChhhCchhhcC--Cc-e
Confidence 22 2346999999998842 123344444444322 233 44456566677778877 76 4
Q ss_pred eeeecCCCCHHHHHHHHHHHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 002337 815 LLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWF 871 (934)
Q Consensus 815 ~i~v~~Pp~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~A~~ 871 (934)
.+.+. |++.++...+++...++.++. .+..+..+++. +++|++.+++....
T Consensus 178 ~v~~~-~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~-----~~gdlr~l~~~l~~ 229 (337)
T PRK12402 178 PLFFR-APTDDELVDVLESIAEAEGVDYDDDGLELIAYY-----AGGDLRKAILTLQT 229 (337)
T ss_pred EEEec-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----cCCCHHHHHHHHHH
Confidence 67777 477888888998887765543 22335566665 35677777665443
No 139
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.13 E-value=1.5e-09 Score=126.00 Aligned_cols=157 Identities=19% Similarity=0.274 Sum_probs=104.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhh----cCCCEEEEEcchhhcccccc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQ----SYSPTILLLRDFDVFRNLVS 473 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~----~~~P~IL~IDEID~L~~~~~ 473 (934)
.+++|+|||||||||+++++|+.++.+++.+++.. .....++.+++.+. .....++||||+|.+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~-------~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--- 106 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT-------SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--- 106 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc-------ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH---
Confidence 36999999999999999999999999999998753 12334555555553 22568999999998754
Q ss_pred CCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCC--CCCCChhhhcccceEEEcC
Q 002337 474 NESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADS--SEGLPPTIRRCFSHEISMG 551 (934)
Q Consensus 474 ~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~--~~~Ld~aLrrrF~~eI~i~ 551 (934)
.....|...++ .+.+++|++|+. ...+++++++|+ +.+.++
T Consensus 107 -------------~~q~~LL~~le-----------------------~~~iilI~att~n~~~~l~~aL~SR~-~~~~~~ 149 (413)
T PRK13342 107 -------------AQQDALLPHVE-----------------------DGTITLIGATTENPSFEVNPALLSRA-QVFELK 149 (413)
T ss_pred -------------HHHHHHHHHhh-----------------------cCcEEEEEeCCCChhhhccHHHhccc-eeeEeC
Confidence 11222222222 345677776543 346899999999 689999
Q ss_pred CCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHH
Q 002337 552 PLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVAD 603 (934)
Q Consensus 552 ~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~ 603 (934)
+++.++...+++..+.....-.... .+..++.++..+.| ..+.+..+++.
T Consensus 150 ~ls~e~i~~lL~~~l~~~~~~~i~i-~~~al~~l~~~s~G-d~R~aln~Le~ 199 (413)
T PRK13342 150 PLSEEDIEQLLKRALEDKERGLVEL-DDEALDALARLANG-DARRALNLLEL 199 (413)
T ss_pred CCCHHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 9999999999998765421100012 24456677776644 33333334433
No 140
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.12 E-value=2e-09 Score=128.74 Aligned_cols=185 Identities=15% Similarity=0.274 Sum_probs=116.9
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEecCcccccc-----
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMASS----- 437 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~el----------g~~~~~I~~~~L~~~~----- 437 (934)
++..+.+...+.+.+.. ..++..++++|+||||||++++.+.+++ ...+++|||..+...+
T Consensus 761 EeEIeeLasfL~paIkg----sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqv 836 (1164)
T PTZ00112 761 EKEIKEVHGFLESGIKQ----SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQV 836 (1164)
T ss_pred HHHHHHHHHHHHHHHhc----CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHH
Confidence 34566666667666542 1233335699999999999999998877 2567899996533211
Q ss_pred ------------ccchHHHHHHHHHHhh--cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCcccc
Q 002337 438 ------------ERKTSAALAQAFNTAQ--SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDE 503 (934)
Q Consensus 438 ------------~g~~e~~L~~~f~~A~--~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~ 503 (934)
.......+..+|.... .....||+|||||.|.... ...+..+++ +.
T Consensus 837 I~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~------------QDVLYnLFR-~~------- 896 (1164)
T PTZ00112 837 LYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT------------QKVLFTLFD-WP------- 896 (1164)
T ss_pred HHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH------------HHHHHHHHH-Hh-------
Confidence 0112345666666542 2235799999999987510 112222221 11
Q ss_pred ccccCCCCchhhhhhhhcccEEEEEecCC---CCCCChhhhcccce-EEEcCCCCHHHHHHHHHHhccccccccCCCCch
Q 002337 504 DEESHGYFPVKEIEKICRQQVLLVAAADS---SEGLPPTIRRCFSH-EISMGPLTEQQRVEMLSQLLQPVSELTSDTGSE 579 (934)
Q Consensus 504 ~~~~~g~~~~~~~~~~~~~~ViVIatTn~---~~~Ld~aLrrrF~~-eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~ 579 (934)
......++|||++|. ++.+++.+++||.. +|.|++++.+++.+||+..+.... ++-.+
T Consensus 897 --------------~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~----gVLdD 958 (1164)
T PTZ00112 897 --------------TKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCK----EIIDH 958 (1164)
T ss_pred --------------hccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCC----CCCCH
Confidence 012457899999986 44577888888754 589999999999999998876431 22234
Q ss_pred HHHHHHHhhcCCCChHHHHHH
Q 002337 580 EFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 580 ~~L~~la~~t~Gfv~~DL~~L 600 (934)
..++.+|+..+. ..+|++..
T Consensus 959 dAIELIArkVAq-~SGDARKA 978 (1164)
T PTZ00112 959 TAIQLCARKVAN-VSGDIRKA 978 (1164)
T ss_pred HHHHHHHHhhhh-cCCHHHHH
Confidence 556666664443 34555543
No 141
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.12 E-value=3.9e-10 Score=119.77 Aligned_cols=165 Identities=12% Similarity=0.149 Sum_probs=102.9
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCC
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR 759 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r 759 (934)
.+.+++|+||+|||||++|++++... +.+++++++.++.... .+++.... .+.+|+|||+|.+....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~ 106 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP 106 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh
Confidence 35789999999999999999998876 4678888887775321 23333332 23599999999985321
Q ss_pred CCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCC---ChhhhCCCCcc--eeeeecCCCCHHHHHHHHHHH
Q 002337 760 GASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLI---DPALLRPGRFD--KLLYVGVNSDVSYRERVLKAL 834 (934)
Q Consensus 760 ~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~l---D~allrpGRfd--~~i~v~~Pp~~~~r~~Il~~~ 834 (934)
.. ...+..++..+. .. +..+|++++..+..+ ++.+.+ ||. ..+.++ |++.+++..+++..
T Consensus 107 -------~~-~~~L~~~l~~~~---~~-~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~-~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 107 -------EW-QEALFHLYNRVR---EA-GGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLP-PLSDEEKIAALQSR 171 (226)
T ss_pred -------HH-HHHHHHHHHHHH---Hc-CCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecC-CCCHHHHHHHHHHH
Confidence 00 122223333222 11 223444444444433 277777 764 678888 47788899999877
Q ss_pred HhcCCCCcCC-CHHHHHhhCCCCCCHHHHHHHHHHHHHHHH
Q 002337 835 TRKFKLLEDV-SLYSIAKKCPPNFTGADMYALCADAWFHAA 874 (934)
Q Consensus 835 ~~~~~~~~~~-~l~~la~~~t~g~sgaDl~~l~~~A~~~A~ 874 (934)
..+..+.-+. -+..++.. -+-+.+++.++++++...+.
T Consensus 172 ~~~~~~~~~~~~l~~L~~~--~~gn~r~L~~~l~~~~~~~~ 210 (226)
T TIGR03420 172 AARRGLQLPDEVADYLLRH--GSRDMGSLMALLDALDRASL 210 (226)
T ss_pred HHHcCCCCCHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHH
Confidence 6654432222 25566664 35567888888887664443
No 142
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.12 E-value=7.4e-10 Score=136.70 Aligned_cols=194 Identities=19% Similarity=0.264 Sum_probs=121.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcccc---------ccccchHHHHHHHHHHhhcCCCEEEEEcchh
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA---------SSERKTSAALAQAFNTAQSYSPTILLLRDFD 466 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~---------~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID 466 (934)
.+..++|+||||||||++++.+|+.++.+++.+++..... .+.|...+.+.+.+..+....| +++|||+|
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEid 426 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEID 426 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChh
Confidence 3456999999999999999999999999999998765332 2334455566666666654444 78999999
Q ss_pred hccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccce
Q 002337 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSH 546 (934)
Q Consensus 467 ~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~ 546 (934)
.+.+.. .+ ...+.|.+++++....... ..|+ .-...-.++++|+|+|.. .|++++++|+.
T Consensus 427 k~~~~~---------~g---~~~~aLlevld~~~~~~~~--d~~~----~~~~dls~v~~i~TaN~~-~i~~aLl~R~~- 486 (784)
T PRK10787 427 KMSSDM---------RG---DPASALLEVLDPEQNVAFS--DHYL----EVDYDLSDVMFVATSNSM-NIPAPLLDRME- 486 (784)
T ss_pred hccccc---------CC---CHHHHHHHHhccccEEEEe--cccc----cccccCCceEEEEcCCCC-CCCHHHhccee-
Confidence 887521 01 1233444444421100000 0000 001124788999999887 59999999996
Q ss_pred EEEcCCCCHHHHHHHHHHhccc--ccc--cc-CCC-CchHHHHHHHhhc-CCCChHHHHHHHHHHHHHHHH
Q 002337 547 EISMGPLTEQQRVEMLSQLLQP--VSE--LT-SDT-GSEEFVKDIIGQT-SGFMPRDLHALVADAGANLIR 610 (934)
Q Consensus 547 eI~i~~Pde~~R~~IL~~ll~~--~~~--l~-~d~-~~~~~L~~la~~t-~Gfv~~DL~~L~~~A~~~ai~ 610 (934)
.|.+..+++++..+|++.++.. ... +. ... -.+..+..++..+ ..+-.+.+...++......+.
T Consensus 487 ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~ 557 (784)
T PRK10787 487 VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVK 557 (784)
T ss_pred eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHH
Confidence 8999999999999999988731 100 11 011 1134455555432 235557777766655444443
No 143
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.12 E-value=5.6e-10 Score=123.04 Aligned_cols=144 Identities=18% Similarity=0.200 Sum_probs=99.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccc--cccchH----------HHHHHHHHHhhcCCCEEEEEcc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMAS--SERKTS----------AALAQAFNTAQSYSPTILLLRD 464 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~--~~g~~e----------~~L~~~f~~A~~~~P~IL~IDE 464 (934)
+++|||.||||||||++++.+|..++.+++.|+|...+.. ..|... ......+..|. ..++++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEech
Confidence 3469999999999999999999999999999998854432 112111 11112334444 3578999999
Q ss_pred hhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCch-hhhhhh-hcccEEEEEecCCCC--------
Q 002337 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPV-KEIEKI-CRQQVLLVAAADSSE-------- 534 (934)
Q Consensus 465 ID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~-~~~~~~-~~~~ViVIatTn~~~-------- 534 (934)
+|...+ ++...|..+++.. +.... ...+.. .+..+.||||+|..+
T Consensus 143 in~a~p----------------~~~~~L~~lLE~~---------~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y 197 (327)
T TIGR01650 143 YDAGRP----------------DVMFVIQRVLEAG---------GKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLY 197 (327)
T ss_pred hhccCH----------------HHHHHHHHHhccC---------CeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcce
Confidence 997654 4455555665421 01111 111222 345788999999854
Q ss_pred ----CCChhhhcccceEEEcCCCCHHHHHHHHHHhc
Q 002337 535 ----GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLL 566 (934)
Q Consensus 535 ----~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll 566 (934)
.++++.+.||...+.++.|+++.-.+|+....
T Consensus 198 ~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 198 HGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred eeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 26899999998788999999999999988654
No 144
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.11 E-value=3.8e-10 Score=122.87 Aligned_cols=134 Identities=26% Similarity=0.373 Sum_probs=90.6
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCc------cccccccchhhhhhH---------------------HH
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP------ELINMYIGESEKNVR---------------------DI 735 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~------~l~~~~~Gese~~v~---------------------~l 735 (934)
.+.+++|+||||||||++|+++|..++.+|+.+++. ++++.|.|.....+. .+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 357899999999999999999999999999998764 444444433222111 12
Q ss_pred HHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCC-------cC------CCCCEEEEEEcCCCC--
Q 002337 736 FQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL-------ND------SSQDLFIIGASNRPD-- 800 (934)
Q Consensus 736 f~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~-------~~------~~~~v~vI~aTNrp~-- 800 (934)
+. |.. .+.+|+|||++.+.+ .+.+.|+..|+.- .. ...++.||+|+|...
T Consensus 100 ~~-A~~-~g~~lllDEi~r~~~-------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~ 164 (262)
T TIGR02640 100 TL-AVR-EGFTLVYDEFTRSKP-------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA 164 (262)
T ss_pred HH-HHH-cCCEEEEcchhhCCH-------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc
Confidence 22 222 346999999998742 2333343333321 00 113678999999763
Q ss_pred ---CCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHH
Q 002337 801 ---LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALT 835 (934)
Q Consensus 801 ---~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~ 835 (934)
.+++++++ || ..+++++ |+.+.-.+|++.+.
T Consensus 165 g~~~l~~aL~~--R~-~~i~i~~-P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 165 GVHETQDALLD--RL-ITIFMDY-PDIDTETAILRAKT 198 (262)
T ss_pred ceecccHHHHh--hc-EEEECCC-CCHHHHHHHHHHhh
Confidence 56899999 99 5789998 67777778887764
No 145
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.10 E-value=6e-10 Score=121.33 Aligned_cols=146 Identities=17% Similarity=0.114 Sum_probs=94.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCc------cccccccchHH-HHH-------------------HHHH
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHN------LMASSERKTSA-ALA-------------------QAFN 450 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~------L~~~~~g~~e~-~L~-------------------~~f~ 450 (934)
+.++||+||||||||++|+++|..+|.+++.++|.. +++.+.+.... .+. ..+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 456999999999999999999999999999998874 22222211111 111 1112
Q ss_pred HhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhh-hhhcccEEEEEe
Q 002337 451 TAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIE-KICRQQVLLVAA 529 (934)
Q Consensus 451 ~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~-~~~~~~ViVIat 529 (934)
.|.. .+.+++|||++.+.+ ++...|..+++...- ...++ ....+ ...+.++.+|+|
T Consensus 101 ~A~~-~g~~lllDEi~r~~~----------------~~q~~Ll~~Le~~~~---~i~~~---~~~~~~i~~~~~frvIaT 157 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKP----------------ETNNVLLSVFEEGVL---ELPGK---RGTSRYVDVHPEFRVIFT 157 (262)
T ss_pred HHHH-cCCEEEEcchhhCCH----------------HHHHHHHHHhcCCeE---EccCC---CCCCceEecCCCCEEEEe
Confidence 2222 467999999997544 445555555543100 00000 00000 112456789999
Q ss_pred cCCCC-----CCChhhhcccceEEEcCCCCHHHHHHHHHHhc
Q 002337 530 ADSSE-----GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLL 566 (934)
Q Consensus 530 Tn~~~-----~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll 566 (934)
+|... .+++++++||. .+.++.|+.++-.+|++.+.
T Consensus 158 sN~~~~~g~~~l~~aL~~R~~-~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 158 SNPVEYAGVHETQDALLDRLI-TIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred eCCccccceecccHHHHhhcE-EEECCCCCHHHHHHHHHHhh
Confidence 99763 46899999985 89999999999999998765
No 146
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.10 E-value=1.2e-09 Score=122.22 Aligned_cols=147 Identities=18% Similarity=0.314 Sum_probs=98.2
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHh
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTA 452 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A 452 (934)
++..+.+...+.. ...+..+||+||||+|||+++++++++++.+++.+++.+ .. .......+.......
T Consensus 27 ~~~~~~l~~~~~~--------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~~~i~~~l~~~~~~~ 95 (316)
T PHA02544 27 AADKETFKSIVKK--------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-IDFVRNRLTRFASTV 95 (316)
T ss_pred HHHHHHHHHHHhc--------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-HHHHHHHHHHHHHhh
Confidence 3555666665541 123345677999999999999999999999999999876 21 111111222221111
Q ss_pred h-cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecC
Q 002337 453 Q-SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAAD 531 (934)
Q Consensus 453 ~-~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn 531 (934)
. ...+.+++|||+|.+.. .+....|..+++. ....+.+|.+||
T Consensus 96 ~~~~~~~vliiDe~d~l~~---------------~~~~~~L~~~le~---------------------~~~~~~~Ilt~n 139 (316)
T PHA02544 96 SLTGGGKVIIIDEFDRLGL---------------ADAQRHLRSFMEA---------------------YSKNCSFIITAN 139 (316)
T ss_pred cccCCCeEEEEECcccccC---------------HHHHHHHHHHHHh---------------------cCCCceEEEEcC
Confidence 1 12478999999997632 1122334444331 134567888999
Q ss_pred CCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhcc
Q 002337 532 SSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQ 567 (934)
Q Consensus 532 ~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~ 567 (934)
.+..+++++++||. .+.++.|+.+++.++++.++.
T Consensus 140 ~~~~l~~~l~sR~~-~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 140 NKNGIIEPLRSRCR-VIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred ChhhchHHHHhhce-EEEeCCCCHHHHHHHHHHHHH
Confidence 99999999999995 899999999999988876543
No 147
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.08 E-value=1.9e-09 Score=126.57 Aligned_cols=165 Identities=14% Similarity=0.226 Sum_probs=106.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEecCccccccccchHH-HHHHHHHHhhcCCCEEEEEcchhhcccc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTSA-ALAQAFNTAQSYSPTILLLRDFDVFRNL 471 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el-----g~~~~~I~~~~L~~~~~g~~e~-~L~~~f~~A~~~~P~IL~IDEID~L~~~ 471 (934)
.+++||||+|+|||+|++++++++ +..++.+++.+++......... ......+..+ .+.+|+|||++.+..+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC
Confidence 459999999999999999999998 5668888887765433221111 1112222222 4679999999988642
Q ss_pred ccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCC---CChhhhcccce--
Q 002337 472 VSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG---LPPTIRRCFSH-- 546 (934)
Q Consensus 472 ~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~---Ld~aLrrrF~~-- 546 (934)
. ....++..+++.+.+ .+..++|++...|.. +++++++||..
T Consensus 227 ~----------~~~~~l~~~~n~l~~-----------------------~~~~iiits~~~p~~l~~l~~~l~SRl~~gl 273 (450)
T PRK00149 227 E----------RTQEEFFHTFNALHE-----------------------AGKQIVLTSDRPPKELPGLEERLRSRFEWGL 273 (450)
T ss_pred H----------HHHHHHHHHHHHHHH-----------------------CCCcEEEECCCCHHHHHHHHHHHHhHhcCCe
Confidence 1 122355555555432 233466666666544 67899999864
Q ss_pred EEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHH
Q 002337 547 EISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVA 602 (934)
Q Consensus 547 eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~ 602 (934)
.+.+.+|+.++|.+|++..++.... .+ .++.++.+|....| ..+.+..++.
T Consensus 274 ~v~i~~pd~~~r~~il~~~~~~~~~---~l-~~e~l~~ia~~~~~-~~R~l~~~l~ 324 (450)
T PRK00149 274 TVDIEPPDLETRIAILKKKAEEEGI---DL-PDEVLEFIAKNITS-NVRELEGALN 324 (450)
T ss_pred eEEecCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHcCcCC-CHHHHHHHHH
Confidence 7899999999999999998864321 22 24556777777654 3333433333
No 148
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.08 E-value=9.8e-10 Score=134.06 Aligned_cols=156 Identities=23% Similarity=0.335 Sum_probs=100.2
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHH-----hCCCcEEEeccccccccC
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKAR-----SARPCVIFFDELDSLAPA 758 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~-----~~~p~vlfiDEid~l~~~ 758 (934)
..+++||||||||||++|+++|+..+.+|+.+++... | .+.+++.++.+. .....+|||||+|.+...
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-----~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~ 124 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-----G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA 124 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-----h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH
Confidence 3579999999999999999999999999988886421 1 123444444442 134579999999988421
Q ss_pred CCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCC--CCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHh
Q 002337 759 RGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP--DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTR 836 (934)
Q Consensus 759 r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp--~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~ 836 (934)
..+.|+..++ ...+++|++|+.. ..+++++++ |. ..+.++ |++.++...|++..+.
T Consensus 125 -------------qQdaLL~~lE-----~g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~-pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 125 -------------QQDALLPWVE-----NGTITLIGATTENPYFEVNKALVS--RS-RLFRLK-SLSDEDLHQLLKRALQ 182 (725)
T ss_pred -------------HHHHHHHHhc-----CceEEEEEecCCChHhhhhhHhhc--cc-cceecC-CCCHHHHHHHHHHHHH
Confidence 2234444443 2457777766432 468899998 75 467787 5788889999988776
Q ss_pred c-------CCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHHHH
Q 002337 837 K-------FKLL-EDVSLYSIAKKCPPNFTGADMYALCADAW 870 (934)
Q Consensus 837 ~-------~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~A~ 870 (934)
. ..+. .+.-+..|++.+ +-+.+++.++++.|.
T Consensus 183 ~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~ 222 (725)
T PRK13341 183 DKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAV 222 (725)
T ss_pred HHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 2 1111 111255666653 233445555555443
No 149
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.08 E-value=2.2e-09 Score=129.74 Aligned_cols=200 Identities=25% Similarity=0.382 Sum_probs=118.4
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc----------CCcEEEecCcccc-------ccccchhhhh----hHHHHHH---
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELI-------NMYIGESEKN----VRDIFQK--- 738 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~-------~~~~Gese~~----v~~lf~~--- 738 (934)
.+.+++|+||||||||++|+++++.. +.+|+.++|..+- ..+.|..... .+..+..
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl 253 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGV 253 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCC
Confidence 35679999999999999999997655 4578999987652 1122211110 1111110
Q ss_pred -------HHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCC-------------------------cCC
Q 002337 739 -------ARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL-------------------------NDS 786 (934)
Q Consensus 739 -------A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~-------------------------~~~ 786 (934)
.......+|||||++.|-+. ....|+..|+.- ...
T Consensus 254 ~~~~~g~v~~asgGvL~LDEi~~Ld~~-------------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~ 320 (615)
T TIGR02903 254 PEPKTGLVTDAHGGVLFIDEIGELDPL-------------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGA 320 (615)
T ss_pred CchhcCchhhcCCCeEEEeccccCCHH-------------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCc
Confidence 01223469999999888522 222222222210 001
Q ss_pred CCCEEEEEE-cCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCCcCCC-HHHHHhhCCCCCCHHHHHH
Q 002337 787 SQDLFIIGA-SNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVS-LYSIAKKCPPNFTGADMYA 864 (934)
Q Consensus 787 ~~~v~vI~a-TNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~-l~~la~~~t~g~sgaDl~~ 864 (934)
..++++|++ |+.++.++++|++ ||.. ++++ |.+.++...|++...++....-+-+ +..+++. .+.|....+
T Consensus 321 ~~~~VLI~aTt~~~~~l~~aLrS--R~~~-i~~~-pls~edi~~Il~~~a~~~~v~ls~eal~~L~~y---s~~gRraln 393 (615)
T TIGR02903 321 PADFVLIGATTRDPEEINPALRS--RCAE-VFFE-PLTPEDIALIVLNAAEKINVHLAAGVEELIARY---TIEGRKAVN 393 (615)
T ss_pred cceEEEEEeccccccccCHHHHh--ceeE-EEeC-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHC---CCcHHHHHH
Confidence 234666665 5568889999988 9974 5666 5788999999999888764322222 3344443 346666666
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhhC
Q 002337 865 LCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELS 911 (934)
Q Consensus 865 l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 911 (934)
++..+...+..+.....+ ......|+.+|++++++.-+
T Consensus 394 ~L~~~~~~~~~~~~~~~~---------~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 394 ILADVYGYALYRAAEAGK---------ENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHHHHHHHHhcc---------CCCCeeECHHHHHHHhCCCc
Confidence 666665554444321000 11235799999999998654
No 150
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.08 E-value=1.4e-09 Score=122.63 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=46.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcccc-cccc-chHHHHHHHHHHh
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA-SSER-KTSAALAQAFNTA 452 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~-~~~g-~~e~~L~~~f~~A 452 (934)
..+.+|||+||||||||++++++|+.++.+++.+++..+.. .+.| +.+..++..|+.|
T Consensus 45 ~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 45 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAA 104 (441)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999887763 4555 4555555555544
No 151
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.08 E-value=5.1e-10 Score=108.66 Aligned_cols=122 Identities=39% Similarity=0.618 Sum_probs=83.4
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccchhhhh---hHHHHHHHHhCCCcEEEeccccccc
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKN---VRDIFQKARSARPCVIFFDELDSLA 756 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Gese~~---v~~lf~~A~~~~p~vlfiDEid~l~ 756 (934)
.+.+++++||||||||++++.++... +.+++.+++.+....+....... ....+..+....+.+|++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 35689999999999999999999998 88999999877665443322221 1222344455678999999999872
Q ss_pred cCCCCCCCCchhHHHHHHhhhhhccCCcC---CCCCEEEEEEcCCCC--CCChhhhCCCCcceeeeec
Q 002337 757 PARGASGDSGGVMDRVVSQMLAEIDGLND---SSQDLFIIGASNRPD--LIDPALLRPGRFDKLLYVG 819 (934)
Q Consensus 757 ~~r~~~~~~~~~~~~v~~~lL~~ldg~~~---~~~~v~vI~aTNrp~--~lD~allrpGRfd~~i~v~ 819 (934)
+. ....++..+..... ...++.+|++||... .+++.+.. ||+..++++
T Consensus 98 ~~-------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 RG-------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HH-------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 11 11222222222211 135688899999887 67888887 999888775
No 152
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.07 E-value=1.8e-09 Score=128.56 Aligned_cols=191 Identities=16% Similarity=0.187 Sum_probs=108.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEecCccccccccchHHHH---------------------
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMASSERKTSAAL--------------------- 445 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el----------g~~~~~I~~~~L~~~~~g~~e~~L--------------------- 445 (934)
+.++||+||||||||++||++.... +.+|++++|....-+..+.....+
T Consensus 86 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~ 165 (531)
T TIGR02902 86 PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQ 165 (531)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCccc
Confidence 4579999999999999999998653 357899998632100000000000
Q ss_pred --HHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCcc----ccccccCCCCchhhhhhh
Q 002337 446 --AQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAE----DEDEESHGYFPVKEIEKI 519 (934)
Q Consensus 446 --~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~----~~~~~~~g~~~~~~~~~~ 519 (934)
...+. ....++|||||++.+.+. ....+...|+.-.-.... ..+.....+....-....
T Consensus 166 ~~~G~l~---~a~gG~L~IdEI~~L~~~------------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (531)
T TIGR02902 166 PKPGAVT---RAHGGVLFIDEIGELHPV------------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGL 230 (531)
T ss_pred ccCchhh---ccCCcEEEEechhhCCHH------------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCc
Confidence 00111 224589999999988651 122333333221000000 000000000000000001
Q ss_pred hcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHH
Q 002337 520 CRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHA 599 (934)
Q Consensus 520 ~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~ 599 (934)
...-.++.+||+.++.+++++++|+. ++.+++++.+++.+|++..++.... ..+ +..++.++..+ ..++++.+
T Consensus 231 ~~d~rlI~ATt~~p~~L~paLrsR~~-~I~f~pL~~eei~~Il~~~a~k~~i---~is-~~al~~I~~y~--~n~Rel~n 303 (531)
T TIGR02902 231 PADFRLIGATTRNPEEIPPALRSRCV-EIFFRPLLDEEIKEIAKNAAEKIGI---NLE-KHALELIVKYA--SNGREAVN 303 (531)
T ss_pred ccceEEEEEecCCcccCChHHhhhhh-eeeCCCCCHHHHHHHHHHHHHHcCC---CcC-HHHHHHHHHhh--hhHHHHHH
Confidence 11223455666789999999999985 8999999999999999998875432 222 33455555433 37899999
Q ss_pred HHHHHHHHHH
Q 002337 600 LVADAGANLI 609 (934)
Q Consensus 600 L~~~A~~~ai 609 (934)
+++.|+..+.
T Consensus 304 ll~~Aa~~A~ 313 (531)
T TIGR02902 304 IVQLAAGIAL 313 (531)
T ss_pred HHHHHHHHHh
Confidence 9998876554
No 153
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=4.1e-09 Score=121.63 Aligned_cols=175 Identities=15% Similarity=0.218 Sum_probs=112.1
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEE
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEY 428 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~------------------------~~~I 428 (934)
+.+++.|...+.. -+.+..+||+||+||||||+|+++|+.++.. ++++
T Consensus 24 e~iv~~L~~~i~~--------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEI 95 (484)
T PRK14956 24 DLAIGALQNALKS--------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEI 95 (484)
T ss_pred HHHHHHHHHHHHc--------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceee
Confidence 3455555555431 1234458999999999999999999998652 2222
Q ss_pred ecCccccccccchHHHHHHHHHHhh----cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccc
Q 002337 429 SCHNLMASSERKTSAALAQAFNTAQ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (934)
Q Consensus 429 ~~~~L~~~~~g~~e~~L~~~f~~A~----~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~ 504 (934)
+.. .......++++.+.+. .....|++|||+|.|.. .....+|+ .++.
T Consensus 96 daa------s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~---------------~A~NALLK-tLEE------ 147 (484)
T PRK14956 96 DAA------SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD---------------QSFNALLK-TLEE------ 147 (484)
T ss_pred chh------hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH---------------HHHHHHHH-Hhhc------
Confidence 221 1112334455444433 22356999999998864 11222232 2221
Q ss_pred cccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHH
Q 002337 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (934)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~ 584 (934)
...++++|.+|+.+..|++.+++|+. .+.+..++..+-.+.++..+..... .. .+..+..
T Consensus 148 ---------------Pp~~viFILaTte~~kI~~TI~SRCq-~~~f~~ls~~~i~~~L~~i~~~Egi---~~-e~eAL~~ 207 (484)
T PRK14956 148 ---------------PPAHIVFILATTEFHKIPETILSRCQ-DFIFKKVPLSVLQDYSEKLCKIENV---QY-DQEGLFW 207 (484)
T ss_pred ---------------CCCceEEEeecCChhhccHHHHhhhh-eeeecCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHH
Confidence 25778999999999999999999985 7889999998888888887754322 12 2455677
Q ss_pred HHhhcCCCChHHHHHHHHHH
Q 002337 585 IIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 585 la~~t~Gfv~~DL~~L~~~A 604 (934)
+++.+.|- .+|...++..+
T Consensus 208 Ia~~S~Gd-~RdAL~lLeq~ 226 (484)
T PRK14956 208 IAKKGDGS-VRDMLSFMEQA 226 (484)
T ss_pred HHHHcCCh-HHHHHHHHHHH
Confidence 77776664 55555555543
No 154
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.06 E-value=3e-09 Score=115.06 Aligned_cols=199 Identities=25% Similarity=0.379 Sum_probs=119.5
Q ss_pred CcceecCCCCCcchHHHHHHHHHcCCc---EEEecCccccccccchhhhhhHHHHHHHHh-----CCCcEEEeccccccc
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECSLN---FLSVKGPELINMYIGESEKNVRDIFQKARS-----ARPCVIFFDELDSLA 756 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~~~---~i~v~~~~l~~~~~Gese~~v~~lf~~A~~-----~~p~vlfiDEid~l~ 756 (934)
..++|+||||||||++|+.++....-+ |+++++.. ...+.+|++|+.++. .+..|||||||+.+-
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 478999999999999999999887655 88777532 234668999999874 456899999999885
Q ss_pred cCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEc--CCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHH
Q 002337 757 PARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGAS--NRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKAL 834 (934)
Q Consensus 757 ~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aT--Nrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~ 834 (934)
.. -...||-.++ .+.|.+|||| |..-.+..||++ |.-..+.=++| .+.-..||..-
T Consensus 236 ks-------------QQD~fLP~VE-----~G~I~lIGATTENPSFqln~aLlS--RC~VfvLekL~--~n~v~~iL~ra 293 (554)
T KOG2028|consen 236 KS-------------QQDTFLPHVE-----NGDITLIGATTENPSFQLNAALLS--RCRVFVLEKLP--VNAVVTILMRA 293 (554)
T ss_pred hh-------------hhhcccceec-----cCceEEEecccCCCccchhHHHHh--ccceeEeccCC--HHHHHHHHHHH
Confidence 22 1123443332 4578888876 333478899998 87654444553 44556666442
Q ss_pred Hh---cC-----CCCc-C--CC---HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccH
Q 002337 835 TR---KF-----KLLE-D--VS---LYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEY 900 (934)
Q Consensus 835 ~~---~~-----~~~~-~--~~---l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~ 900 (934)
.. +. ++.. . ++ ++.++..+ +|=.-+-|.+|--.+.+ +..|. ...+.+.++.
T Consensus 294 ia~l~dser~~~~l~n~s~~ve~siidyla~ls-dGDaR~aLN~Lems~~m-~~tr~-------------g~~~~~~lSi 358 (554)
T KOG2028|consen 294 IASLGDSERPTDPLPNSSMFVEDSIIDYLAYLS-DGDARAALNALEMSLSM-FCTRS-------------GQSSRVLLSI 358 (554)
T ss_pred HHhhccccccCCCCCCcchhhhHHHHHHHHHhc-CchHHHHHHHHHHHHHH-HHhhc-------------CCcccceecH
Confidence 22 11 1111 1 11 44555553 44333333332211111 11221 1124567999
Q ss_pred HHHHHHHHhhCCCcCHHHHHHHHHHHH
Q 002337 901 DDFVKVLRELSPSLSMAELKKYELLRD 927 (934)
Q Consensus 901 ~df~~al~~~~psvs~~~l~~y~~~~~ 927 (934)
+|..++|+.-.--....--++|..+..
T Consensus 359 dDvke~lq~s~~~YDr~Ge~HYntISA 385 (554)
T KOG2028|consen 359 DDVKEGLQRSHILYDRAGEEHYNTISA 385 (554)
T ss_pred HHHHHHHhhccceecccchhHHHHHHH
Confidence 999999987654444444556665543
No 155
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.06 E-value=2.1e-09 Score=121.36 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=45.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcccc-cccc-chHHHHHHHHHHh
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA-SSER-KTSAALAQAFNTA 452 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~-~~~g-~~e~~L~~~f~~A 452 (934)
+.++||+||||||||++++++|+.++.+++.+++..+.. .|.| ..+..++.+|+.|
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A 107 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIA 107 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999987774 4555 4455555555555
No 156
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.06 E-value=2.5e-09 Score=123.88 Aligned_cols=166 Identities=14% Similarity=0.216 Sum_probs=106.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEecCccccccccchH-HHHHHHHHHhhcCCCEEEEEcchhhcccc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTS-AALAQAFNTAQSYSPTILLLRDFDVFRNL 471 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el-----g~~~~~I~~~~L~~~~~g~~e-~~L~~~f~~A~~~~P~IL~IDEID~L~~~ 471 (934)
.+++||||+|+|||+|++++++++ +..++.+++.+++........ ..+....+..+ .+.+|+|||++.+...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC
Confidence 458999999999999999999987 567888888765543221110 01111222222 3579999999987642
Q ss_pred ccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCC---CChhhhcccce--
Q 002337 472 VSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG---LPPTIRRCFSH-- 546 (934)
Q Consensus 472 ~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~---Ld~aLrrrF~~-- 546 (934)
. ....++..+++.+.+ .+..+||++...|.. +++.+++||..
T Consensus 215 ~----------~~~~~l~~~~n~~~~-----------------------~~~~iiits~~~p~~l~~l~~~l~SRl~~g~ 261 (405)
T TIGR00362 215 E----------RTQEEFFHTFNALHE-----------------------NGKQIVLTSDRPPKELPGLEERLRSRFEWGL 261 (405)
T ss_pred H----------HHHHHHHHHHHHHHH-----------------------CCCCEEEecCCCHHHHhhhhhhhhhhccCCe
Confidence 1 122345555554422 233456666655544 66889999864
Q ss_pred EEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHH
Q 002337 547 EISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVAD 603 (934)
Q Consensus 547 eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~ 603 (934)
.+.+++|+.++|.+|++..++.... .+ .++.++.+|.+..+ ..+++..++..
T Consensus 262 ~v~i~~pd~~~r~~il~~~~~~~~~---~l-~~e~l~~ia~~~~~-~~r~l~~~l~~ 313 (405)
T TIGR00362 262 VVDIEPPDLETRLAILQKKAEEEGL---EL-PDEVLEFIAKNIRS-NVRELEGALNR 313 (405)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 6999999999999999998865422 22 25567778876655 33555554443
No 157
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.05 E-value=1.7e-09 Score=115.81 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=92.6
Q ss_pred CcceecCCCCCcchHHHHHHHHHcC---CcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCC
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECS---LNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGA 761 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~---~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~ 761 (934)
..++||||+|||||+++++++++.. ..+.+++..+... ...++++.... ..+|+|||++.+..+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~~- 114 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDEL- 114 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCHH-
Confidence 5799999999999999999988653 3344444333211 11223333222 25899999999864311
Q ss_pred CCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCC---CChhhhCCCCcce--eeeecCCCCHHHHHHHHHHHHh
Q 002337 762 SGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL---IDPALLRPGRFDK--LLYVGVNSDVSYRERVLKALTR 836 (934)
Q Consensus 762 ~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~---lD~allrpGRfd~--~i~v~~Pp~~~~r~~Il~~~~~ 836 (934)
....+-.++..+ .+.++.-+++.+++.|.. +.|.|++ |+.. .+.+. ||+.+.+.+|++....
T Consensus 115 -------~~~~lf~l~n~~---~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~-~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 115 -------WEMAIFDLYNRI---LESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQ-PLSDEEKLQALQLRAR 181 (235)
T ss_pred -------HHHHHHHHHHHH---HHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeec-CCCHHHHHHHHHHHHH
Confidence 122222222221 111222345555555554 6799999 9974 45555 5788899999987555
Q ss_pred c--CCCCcCCCHHHHHhhCCCCCCHHHHHHHHHH
Q 002337 837 K--FKLLEDVSLYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 837 ~--~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
. +.+.+++ ++.+++++ .=+.+.+.+++..
T Consensus 182 ~~~~~l~~~v-~~~L~~~~--~~d~r~l~~~l~~ 212 (235)
T PRK08084 182 LRGFELPEDV-GRFLLKRL--DREMRTLFMTLDQ 212 (235)
T ss_pred HcCCCCCHHH-HHHHHHhh--cCCHHHHHHHHHH
Confidence 4 3333333 67788874 3355666666655
No 158
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=3.4e-09 Score=123.95 Aligned_cols=148 Identities=18% Similarity=0.288 Sum_probs=99.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC------------------------cEEEEecCccccccccchHHHHHHHHHH
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGI------------------------HVVEYSCHNLMASSERKTSAALAQAFNT 451 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~------------------------~~~~I~~~~L~~~~~g~~e~~L~~~f~~ 451 (934)
.+.++||+|||||||||+|+++|+.++. .++.++... ......++++.+.
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~ 108 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDA 108 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHH
Confidence 4456899999999999999999999864 244444321 1223445555555
Q ss_pred hhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEE
Q 002337 452 AQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLV 527 (934)
Q Consensus 452 A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVI 527 (934)
+.. ....+++|||+|.|.. .....++ ..++. ..+.+++|
T Consensus 109 ~~~~p~~~~~kVvIIDE~h~Lt~---------------~a~~~LL-k~LE~---------------------p~~~vv~I 151 (472)
T PRK14962 109 VGYRPMEGKYKVYIIDEVHMLTK---------------EAFNALL-KTLEE---------------------PPSHVVFV 151 (472)
T ss_pred HhhChhcCCeEEEEEEChHHhHH---------------HHHHHHH-HHHHh---------------------CCCcEEEE
Confidence 442 1346999999998854 1112222 22221 14567778
Q ss_pred EecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC
Q 002337 528 AAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (934)
Q Consensus 528 atTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G 591 (934)
++|+.+..+++++++|+. .+.+.+++..+...+++..++.... .. .+..+..++..+.|
T Consensus 152 lattn~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~egi---~i-~~eal~~Ia~~s~G 210 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEAEGI---EI-DREALSFIAKRASG 210 (472)
T ss_pred EEeCChHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHhCC
Confidence 787788899999999985 8999999999999998887754322 22 24456777776654
No 159
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.05 E-value=1e-08 Score=108.92 Aligned_cols=178 Identities=15% Similarity=0.209 Sum_probs=109.7
Q ss_pred chHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHH
Q 002337 372 QGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQA 448 (934)
Q Consensus 372 ~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~~e~~L~~~ 448 (934)
.....+.+...+. ...+.+++|+||+|||||+++++++++. +.+++.++|.++.... ...
T Consensus 22 ~~~~~~~l~~~~~---------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~ 84 (226)
T TIGR03420 22 NAELLAALRQLAA---------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEV 84 (226)
T ss_pred cHHHHHHHHHHHh---------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHH
Confidence 3445566665542 1334679999999999999999999887 4678889887654321 223
Q ss_pred HHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEE
Q 002337 449 FNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVA 528 (934)
Q Consensus 449 f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIa 528 (934)
+.... .+.+|+|||++.+.... .....+..+++.... .+..++++
T Consensus 85 ~~~~~--~~~lLvIDdi~~l~~~~----------~~~~~L~~~l~~~~~-----------------------~~~~iIit 129 (226)
T TIGR03420 85 LEGLE--QADLVCLDDVEAIAGQP----------EWQEALFHLYNRVRE-----------------------AGGRLLIA 129 (226)
T ss_pred Hhhcc--cCCEEEEeChhhhcCCh----------HHHHHHHHHHHHHHH-----------------------cCCeEEEE
Confidence 33222 24699999999875310 001233333332211 22234454
Q ss_pred ecCCCCCC--C-hhhhccc--ceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHH
Q 002337 529 AADSSEGL--P-PTIRRCF--SHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVAD 603 (934)
Q Consensus 529 tTn~~~~L--d-~aLrrrF--~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~ 603 (934)
++..+..+ . +.+++|+ ...+.+++|+++++..+++........ .. ....++.++.. -+-..+++..++++
T Consensus 130 s~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~-~~~~l~~L~~~-~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 130 GRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL---QL-PDEVADYLLRH-GSRDMGSLMALLDA 204 (226)
T ss_pred CCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHh-ccCCHHHHHHHHHH
Confidence 44444433 2 7788776 468999999999999999876543221 22 24446667764 55667777777776
Q ss_pred HHH
Q 002337 604 AGA 606 (934)
Q Consensus 604 A~~ 606 (934)
+..
T Consensus 205 ~~~ 207 (226)
T TIGR03420 205 LDR 207 (226)
T ss_pred HHH
Confidence 543
No 160
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.05 E-value=1.2e-09 Score=122.30 Aligned_cols=131 Identities=24% Similarity=0.298 Sum_probs=86.7
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHH-hCCCcEEEeccccccccCCCCC
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKAR-SARPCVIFFDELDSLAPARGAS 762 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~-~~~p~vlfiDEid~l~~~r~~~ 762 (934)
+..++|+||||+|||++|++++++.+.+++.+++++ .. +......+........ ...+.+|+|||+|.+...
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~---- 115 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA---- 115 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----
Confidence 345666999999999999999999999999998876 21 1111111222111111 135789999999987311
Q ss_pred CCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHh
Q 002337 763 GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTR 836 (934)
Q Consensus 763 ~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~ 836 (934)
. ....+..+ |+.. ..++.+|.+||.++.+++++++ ||. .+.++. |+.+++..|++.+.+
T Consensus 116 ----~-~~~~L~~~---le~~---~~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~-p~~~~~~~il~~~~~ 174 (316)
T PHA02544 116 ----D-AQRHLRSF---MEAY---SKNCSFIITANNKNGIIEPLRS--RCR-VIDFGV-PTKEEQIEMMKQMIV 174 (316)
T ss_pred ----H-HHHHHHHH---HHhc---CCCceEEEEcCChhhchHHHHh--hce-EEEeCC-CCHHHHHHHHHHHHH
Confidence 0 12233333 4433 2456778899999999999999 995 678876 677788877765543
No 161
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.05 E-value=3e-09 Score=121.63 Aligned_cols=203 Identities=18% Similarity=0.239 Sum_probs=116.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcccc-ccccch-HHHHHHHHHHh----hcCCCEEEEEcchhhccc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA-SSERKT-SAALAQAFNTA----QSYSPTILLLRDFDVFRN 470 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~-~~~g~~-e~~L~~~f~~A----~~~~P~IL~IDEID~L~~ 470 (934)
..++||+||||||||++|+++|..++.++..+++..+.. .+.|.. +..+...+..+ ....++|+||||+|.+.+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 358999999999999999999999999999999887653 344553 34444444322 224678999999999987
Q ss_pred cccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCC-----------------
Q 002337 471 LVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS----------------- 533 (934)
Q Consensus 471 ~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~----------------- 533 (934)
+.+......+..+ ..+.+.|.++++..... ....+| ......+.++|.|+|-.
T Consensus 196 ~~~~~s~~~dvsg--~~vq~~LL~iLeG~~~~-v~~~~g-------r~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r 265 (413)
T TIGR00382 196 KSENPSITRDVSG--EGVQQALLKIIEGTVAN-VPPQGG-------RKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKR 265 (413)
T ss_pred hhccccccccccc--hhHHHHHHHHhhcccee-cccCCC-------ccccCCCeEEEEcCCceeeecccccChHHHHHHH
Confidence 5322221122111 13444444544311100 000000 01112233344443320
Q ss_pred ---------------------------------CCCChhhhcccceEEEcCCCCHHHHHHHHHHh----cccccccc--C
Q 002337 534 ---------------------------------EGLPPTIRRCFSHEISMGPLTEQQRVEMLSQL----LQPVSELT--S 574 (934)
Q Consensus 534 ---------------------------------~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~l----l~~~~~l~--~ 574 (934)
.++.|++..|++..+.+.+++.+...+|+... +++...+. .
T Consensus 266 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~ 345 (413)
T TIGR00382 266 TGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMD 345 (413)
T ss_pred hhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 01456777788888889899999998888652 22211110 0
Q ss_pred CC---CchHHHHHHHhh--cCCCChHHHHHHHHHHHHHHH
Q 002337 575 DT---GSEEFVKDIIGQ--TSGFMPRDLHALVADAGANLI 609 (934)
Q Consensus 575 d~---~~~~~L~~la~~--t~Gfv~~DL~~L~~~A~~~ai 609 (934)
++ -.+..++.+++. ...+-.+-|+.+++...+..+
T Consensus 346 gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m 385 (413)
T TIGR00382 346 NVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVM 385 (413)
T ss_pred CeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHH
Confidence 11 114456666665 234666777777776554443
No 162
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=3.8e-09 Score=120.49 Aligned_cols=159 Identities=20% Similarity=0.219 Sum_probs=103.8
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCc------------------------EEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLN------------------------FLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~------------------------~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+..++|+||+|+|||++|+++|+.+... ++.+++.. ...-..++++.+.+
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~ 111 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNI 111 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHH
Confidence 3467999999999999999999987531 22222110 01223466666655
Q ss_pred Hh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 RS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
.. ....|++|||+|.+. ....+.||..++.. ...+.+|.+|+.++.+.+.+++ |+ ..
T Consensus 112 ~~~p~~~~~kviIIDEa~~l~-------------~~a~naLLk~lEe~---~~~~~fIl~t~~~~~l~~tI~S--Rc-~~ 172 (363)
T PRK14961 112 YYSPSKSRFKVYLIDEVHMLS-------------RHSFNALLKTLEEP---PQHIKFILATTDVEKIPKTILS--RC-LQ 172 (363)
T ss_pred hcCcccCCceEEEEEChhhcC-------------HHHHHHHHHHHhcC---CCCeEEEEEcCChHhhhHHHHh--hc-eE
Confidence 42 234699999999884 22445677666653 3456666677778889999887 87 46
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHHHH
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAW 870 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~A~ 870 (934)
+.++ |++.++..++++..+++.+.. ++..+..++..+ +-+.+++.+++..++
T Consensus 173 ~~~~-~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s--~G~~R~al~~l~~~~ 225 (363)
T PRK14961 173 FKLK-IISEEKIFNFLKYILIKESIDTDEYALKLIAYHA--HGSMRDALNLLEHAI 225 (363)
T ss_pred EeCC-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 7777 578888888888877765532 223356677663 335666666665543
No 163
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.04 E-value=5.7e-09 Score=124.63 Aligned_cols=159 Identities=19% Similarity=0.246 Sum_probs=105.2
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC------------------------cEEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL------------------------NFLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~------------------------~~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+..+||+||+|||||++++++|+.++. +++.++..+ ...-..++++++.+
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a 111 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERA 111 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHH
Confidence 456799999999999999999998754 233333211 11123466777665
Q ss_pred Hh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 RS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
.. ....|+||||+|.|. ....+.||+.|+.. ..++.+|.+||.++.|.+.+++ |+ ..
T Consensus 112 ~~~P~~gr~KVIIIDEah~LT-------------~~A~NALLKtLEEP---P~~v~FILaTtd~~KIp~TIrS--RC-q~ 172 (830)
T PRK07003 112 VYAPVDARFKVYMIDEVHMLT-------------NHAFNAMLKTLEEP---PPHVKFILATTDPQKIPVTVLS--RC-LQ 172 (830)
T ss_pred HhccccCCceEEEEeChhhCC-------------HHHHHHHHHHHHhc---CCCeEEEEEECChhhccchhhh--he-EE
Confidence 42 345799999999984 23456777776654 3467788888889999999998 88 56
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHHHH
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAW 870 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~A~ 870 (934)
+.|.. ...++-.++|+..+++.++. ++..+..|++.+ . -+.+|..+++..+.
T Consensus 173 f~Fk~-Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A-~-GsmRdALsLLdQAi 225 (830)
T PRK07003 173 FNLKQ-MPAGHIVSHLERILGEERIAFEPQALRLLARAA-Q-GSMRDALSLTDQAI 225 (830)
T ss_pred EecCC-cCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-C-CCHHHHHHHHHHHH
Confidence 67764 56667777777766654432 223356677763 3 34566666665544
No 164
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.04 E-value=4e-09 Score=121.26 Aligned_cols=212 Identities=17% Similarity=0.241 Sum_probs=117.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcccc-ccccchH-HHHHHHHHHh----hcCCCEEEEEcchhhcc
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA-SSERKTS-AALAQAFNTA----QSYSPTILLLRDFDVFR 469 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~-~~~g~~e-~~L~~~f~~A----~~~~P~IL~IDEID~L~ 469 (934)
...++||+||||||||++|+++|..++.+|+.+++..+.. .+.|... ..+...+..+ ....++|+||||||.+.
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~ 186 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIA 186 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhc
Confidence 3468999999999999999999999999999999988764 4455533 3344444322 23468999999999998
Q ss_pred ccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCch-hhhhhhhcccEEEEEecCC----------------
Q 002337 470 NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPV-KEIEKICRQQVLLVAAADS---------------- 532 (934)
Q Consensus 470 ~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~-~~~~~~~~~~ViVIatTn~---------------- 532 (934)
+...+.+...+..+ ..+++.|.++++... ......+|.... .....+...++++|++.+.
T Consensus 187 ~~~~~~~~~~d~s~--~~vQ~~LL~~Leg~~-~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~ 263 (412)
T PRK05342 187 RKSENPSITRDVSG--EGVQQALLKILEGTV-ASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGI 263 (412)
T ss_pred cccCCCCcCCCccc--HHHHHHHHHHHhcCe-EEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhccc
Confidence 74322111112111 235555555553210 000000000000 0000111222323211110
Q ss_pred -----------------------CC-----CCChhhhcccceEEEcCCCCHHHHHHHHHH----hccccccc--cCCC--
Q 002337 533 -----------------------SE-----GLPPTIRRCFSHEISMGPLTEQQRVEMLSQ----LLQPVSEL--TSDT-- 576 (934)
Q Consensus 533 -----------------------~~-----~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~----ll~~~~~l--~~d~-- 576 (934)
++ ++.|++..|++..+.+.++++++...|+.. ++++...+ ..++
T Consensus 264 gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L 343 (412)
T PRK05342 264 GFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVEL 343 (412)
T ss_pred CCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE
Confidence 00 246777778888889999999999998872 33222111 0011
Q ss_pred -CchHHHHHHHhh--cCCCChHHHHHHHHHHHHHHHH
Q 002337 577 -GSEEFVKDIIGQ--TSGFMPRDLHALVADAGANLIR 610 (934)
Q Consensus 577 -~~~~~L~~la~~--t~Gfv~~DL~~L~~~A~~~ai~ 610 (934)
-.+..++.+++. ..++-.+-|+.+++......+.
T Consensus 344 ~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 344 EFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred EECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 124456667765 3346667777777766555443
No 165
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.03 E-value=2.5e-09 Score=113.88 Aligned_cols=176 Identities=13% Similarity=0.112 Sum_probs=106.2
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCC
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR 759 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r 759 (934)
...+++|+||+|||||++|++++.+. +..++++++.++... +.. .....+|+|||+|.+...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~~~- 105 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLDDA- 105 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcCch-
Confidence 45789999999999999999998865 667888887665321 111 224569999999987421
Q ss_pred CCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC--CCChhhhCCCCc--ceeeeecCCCCHHHHHHHHHHHH
Q 002337 760 GASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD--LIDPALLRPGRF--DKLLYVGVNSDVSYRERVLKALT 835 (934)
Q Consensus 760 ~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~--~lD~allrpGRf--d~~i~v~~Pp~~~~r~~Il~~~~ 835 (934)
. ...+..++.. .......+++++++..|. .+.+.+.+ || ...+.++ |++.+.+..+++.+.
T Consensus 106 -----~----~~~L~~~~~~---~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~-pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 106 -----Q----QIALFNLFNR---VRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELK-PLSDADKIAALKAAA 170 (227)
T ss_pred -----H----HHHHHHHHHH---HHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEec-CCCHHHHHHHHHHHH
Confidence 1 1222233332 222222344444443332 35577776 77 4678888 467777888887766
Q ss_pred hcCCCCcCC-CHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHH
Q 002337 836 RKFKLLEDV-SLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLR 908 (934)
Q Consensus 836 ~~~~~~~~~-~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~ 908 (934)
....+.-+. -+..++..+ .-+.+++.++++.-...|... ...||...+.+++.
T Consensus 171 ~~~~v~l~~~al~~L~~~~--~gn~~~l~~~l~~l~~~~~~~------------------~~~i~~~~~~~~l~ 224 (227)
T PRK08903 171 AERGLQLADEVPDYLLTHF--RRDMPSLMALLDALDRYSLEQ------------------KRPVTLPLLREMLA 224 (227)
T ss_pred HHcCCCCCHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHh------------------CCCCCHHHHHHHHh
Confidence 654433222 255666652 335566777766533333221 13688888888875
No 166
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=2e-09 Score=123.16 Aligned_cols=188 Identities=18% Similarity=0.296 Sum_probs=113.4
Q ss_pred hcCCHHHHHHHHHhhhcccccccCCCCCccchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHcCCcE---------
Q 002337 642 QVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNF--------- 712 (934)
Q Consensus 642 ~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~--------- 712 (934)
.+++++.+...|.+........ ... .+...+..+||+||+|+|||++|+++|+.+...-
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~----------~~~--~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C 73 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARAD----------VAA--AGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGEC 73 (394)
T ss_pred hccChHHHHHHHHHHHHhcccc----------ccc--cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 3567777777666553321110 000 1223467899999999999999999998753321
Q ss_pred ------EEecCcccccccc-c--hhhhhhHHHHHHHHh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhh
Q 002337 713 ------LSVKGPELINMYI-G--ESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAE 779 (934)
Q Consensus 713 ------i~v~~~~l~~~~~-G--ese~~v~~lf~~A~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ 779 (934)
..-+-+++.--.. | -.-..+|++++.+.. ....|+||||+|.+.. ...+.||..
T Consensus 74 ~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~-------------~aanaLLk~ 140 (394)
T PRK07940 74 RACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE-------------RAANALLKA 140 (394)
T ss_pred HHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH-------------HHHHHHHHH
Confidence 0001111110000 0 112347888887754 2346999999999952 234677777
Q ss_pred ccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCH
Q 002337 780 IDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTG 859 (934)
Q Consensus 780 ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sg 859 (934)
|+.. ....++|++|+| ++.+.|.+++ |+ ..++|+. |+.++..++|. ++..+. ......++.. ++|..|
T Consensus 141 LEep--~~~~~fIL~a~~-~~~llpTIrS--Rc-~~i~f~~-~~~~~i~~~L~---~~~~~~-~~~a~~la~~-s~G~~~ 208 (394)
T PRK07940 141 VEEP--PPRTVWLLCAPS-PEDVLPTIRS--RC-RHVALRT-PSVEAVAEVLV---RRDGVD-PETARRAARA-SQGHIG 208 (394)
T ss_pred hhcC--CCCCeEEEEECC-hHHChHHHHh--hC-eEEECCC-CCHHHHHHHHH---HhcCCC-HHHHHHHHHH-cCCCHH
Confidence 7754 234566666665 8999999999 87 6888985 66666555554 232332 2234566766 588888
Q ss_pred HHHHHHH
Q 002337 860 ADMYALC 866 (934)
Q Consensus 860 aDl~~l~ 866 (934)
.-+.-+.
T Consensus 209 ~A~~l~~ 215 (394)
T PRK07940 209 RARRLAT 215 (394)
T ss_pred HHHHHhc
Confidence 6655443
No 167
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=2.1e-09 Score=126.93 Aligned_cols=181 Identities=20% Similarity=0.298 Sum_probs=116.9
Q ss_pred hhcCCHHHHHHHHHhhhcccccccCCCCCccchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHcCC----------
Q 002337 641 TQVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL---------- 710 (934)
Q Consensus 641 ~~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~---------- 710 (934)
..+++++++...|.+.-... +.+..+||+||+|+|||++|+.+|+.++.
T Consensus 16 ddVIGQe~vv~~L~~al~~g---------------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~ 74 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ---------------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT 74 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC---------------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC
Confidence 44667777777666542211 12456799999999999999999998764
Q ss_pred -------------------cEEEecCccccccccchhhhhhHHHHHHHH----hCCCcEEEeccccccccCCCCCCCCch
Q 002337 711 -------------------NFLSVKGPELINMYIGESEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGG 767 (934)
Q Consensus 711 -------------------~~i~v~~~~l~~~~~Gese~~v~~lf~~A~----~~~p~vlfiDEid~l~~~r~~~~~~~~ 767 (934)
.++.+++.. ...-..+|++.+.+. .....|++|||+|.|.
T Consensus 75 ~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls----------- 137 (700)
T PRK12323 75 AQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT----------- 137 (700)
T ss_pred CCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-----------
Confidence 222332211 011234666666654 2345799999999994
Q ss_pred hHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCCcCC-CH
Q 002337 768 VMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDV-SL 846 (934)
Q Consensus 768 ~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~-~l 846 (934)
....|.||+.|+.- ..++++|.+||.++.|.+.+++ |+ ..+.|.. ++.++..+.|+..+.+..+..+. .+
T Consensus 138 --~~AaNALLKTLEEP---P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~-ls~eei~~~L~~Il~~Egi~~d~eAL 208 (700)
T PRK12323 138 --NHAFNAMLKTLEEP---PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQ-MPPGHIVSHLDAILGEEGIAHEVNAL 208 (700)
T ss_pred --HHHHHHHHHhhccC---CCCceEEEEeCChHhhhhHHHH--HH-HhcccCC-CChHHHHHHHHHHHHHcCCCCCHHHH
Confidence 23567788877753 3567788888889999999998 87 5677774 56666666666655544433222 24
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHH
Q 002337 847 YSIAKKCPPNFTGADMYALCADAW 870 (934)
Q Consensus 847 ~~la~~~t~g~sgaDl~~l~~~A~ 870 (934)
..+++. .+-+.+|..+++..+.
T Consensus 209 ~~IA~~--A~Gs~RdALsLLdQai 230 (700)
T PRK12323 209 RLLAQA--AQGSMRDALSLTDQAI 230 (700)
T ss_pred HHHHHH--cCCCHHHHHHHHHHHH
Confidence 556666 3456667666665433
No 168
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=7.7e-09 Score=123.55 Aligned_cols=174 Identities=18% Similarity=0.254 Sum_probs=112.9
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEE
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEY 428 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~------------------------~~~I 428 (934)
+.+++.|...+.. -+.+..+||+||+||||||+++++|+.++.. ++++
T Consensus 22 e~Vv~~L~~aL~~--------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 22 EHVVRALTHALDG--------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred HHHHHHHHHHHhc--------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 4566666665431 1334557999999999999999999998642 2222
Q ss_pred ecCccccccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccc
Q 002337 429 SCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (934)
Q Consensus 429 ~~~~L~~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~ 504 (934)
+.. .......++.+++.+.. ....|++|||+|.|.. .....+|+ .++.
T Consensus 94 DAa------s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------~A~NALLK-tLEE------ 145 (830)
T PRK07003 94 DAA------SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------HAFNAMLK-TLEE------ 145 (830)
T ss_pred ccc------ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------HHHHHHHH-HHHh------
Confidence 221 11223445666665432 2347999999998854 11222333 2221
Q ss_pred cccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHH
Q 002337 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (934)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~ 584 (934)
....+.+|.+||.+..|.+.+++|+. .+.|..++.++..+.|+..+..... .. .+..+..
T Consensus 146 ---------------PP~~v~FILaTtd~~KIp~TIrSRCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI---~i-d~eAL~l 205 (830)
T PRK07003 146 ---------------PPPHVKFILATTDPQKIPVTVLSRCL-QFNLKQMPAGHIVSHLERILGEERI---AF-EPQALRL 205 (830)
T ss_pred ---------------cCCCeEEEEEECChhhccchhhhheE-EEecCCcCHHHHHHHHHHHHHHcCC---CC-CHHHHHH
Confidence 15678899999999999999999984 9999999999999999887754322 11 2445667
Q ss_pred HHhhcCCCChHHHHHHHHH
Q 002337 585 IIGQTSGFMPRDLHALVAD 603 (934)
Q Consensus 585 la~~t~Gfv~~DL~~L~~~ 603 (934)
+++...|-. +|...++..
T Consensus 206 IA~~A~Gsm-RdALsLLdQ 223 (830)
T PRK07003 206 LARAAQGSM-RDALSLTDQ 223 (830)
T ss_pred HHHHcCCCH-HHHHHHHHH
Confidence 777776644 444444433
No 169
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=2.6e-09 Score=123.35 Aligned_cols=156 Identities=20% Similarity=0.309 Sum_probs=99.1
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCc------------------------EEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLN------------------------FLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~------------------------~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+..+||+||+|||||++|+++|+.++.. |+.+++.. ...-..+|++.+.+
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l 113 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNV 113 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHH
Confidence 3458999999999999999999987642 23332210 01123456665554
Q ss_pred H----hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 R----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~----~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
. .....|+||||+|.+. ....+.||..|+.. ...+++|.+|+.++.|.+++++ |+. .
T Consensus 114 ~~~p~~g~~KV~IIDEah~Ls-------------~~A~NALLKtLEEP---p~~viFILaTte~~kI~~TI~S--RCq-~ 174 (484)
T PRK14956 114 KFAPMGGKYKVYIIDEVHMLT-------------DQSFNALLKTLEEP---PAHIVFILATTEFHKIPETILS--RCQ-D 174 (484)
T ss_pred HhhhhcCCCEEEEEechhhcC-------------HHHHHHHHHHhhcC---CCceEEEeecCChhhccHHHHh--hhh-e
Confidence 3 3345699999999984 23567777777653 3578888888889999999999 985 4
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHH
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCA 867 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~ 867 (934)
+.|.. .+.+.-...++..+++.++. .+..+..+|+.. +-+.+|.-+++.
T Consensus 175 ~~f~~-ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S--~Gd~RdAL~lLe 224 (484)
T PRK14956 175 FIFKK-VPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKG--DGSVRDMLSFME 224 (484)
T ss_pred eeecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CChHHHHHHHHH
Confidence 55553 44555566666666554432 222355566552 233444444443
No 170
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=8.4e-09 Score=122.12 Aligned_cols=175 Identities=18% Similarity=0.268 Sum_probs=113.2
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCC------------------------cEEEE
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGI------------------------HVVEY 428 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~------------------------~~~~I 428 (934)
+.+++.|...+.. .+.+..+||+||+|+||||+|+++|+.++. +++++
T Consensus 21 e~vv~~L~~aI~~--------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 21 NHVSRALSSALER--------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred HHHHHHHHHHHHc--------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 3456666665531 133456899999999999999999999864 23333
Q ss_pred ecCccccccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccc
Q 002337 429 SCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (934)
Q Consensus 429 ~~~~L~~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~ 504 (934)
+..+ ......++.+...+.. ....|++|||+|.|.. .. ...|.+.++.
T Consensus 93 DAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~---------------~A-~NALLKtLEE------ 144 (702)
T PRK14960 93 DAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST---------------HS-FNALLKTLEE------ 144 (702)
T ss_pred cccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------HH-HHHHHHHHhc------
Confidence 3321 1233455665554431 2346999999998764 11 2223233321
Q ss_pred cccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHH
Q 002337 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (934)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~ 584 (934)
....+.+|.+|+.+..+++.+++|+. .+.+..++.++....++..++.... .. ....+..
T Consensus 145 ---------------PP~~v~FILaTtd~~kIp~TIlSRCq-~feFkpLs~eEI~k~L~~Il~kEgI---~i-d~eAL~~ 204 (702)
T PRK14960 145 ---------------PPEHVKFLFATTDPQKLPITVISRCL-QFTLRPLAVDEITKHLGAILEKEQI---AA-DQDAIWQ 204 (702)
T ss_pred ---------------CCCCcEEEEEECChHhhhHHHHHhhh-eeeccCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHH
Confidence 14567788888889999999999885 8999999999999888887754322 12 2445667
Q ss_pred HHhhcCCCChHHHHHHHHHH
Q 002337 585 IIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 585 la~~t~Gfv~~DL~~L~~~A 604 (934)
++..+.| ..+|..+++..+
T Consensus 205 IA~~S~G-dLRdALnLLDQa 223 (702)
T PRK14960 205 IAESAQG-SLRDALSLTDQA 223 (702)
T ss_pred HHHHcCC-CHHHHHHHHHHH
Confidence 7776655 555666655443
No 171
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.02 E-value=7.4e-09 Score=121.67 Aligned_cols=167 Identities=16% Similarity=0.286 Sum_probs=111.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEE------------EecCccccc----------cccchHHHHHHHHHHhh
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE------------YSCHNLMAS----------SERKTSAALAQAFNTAQ 453 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~~~------------I~~~~L~~~----------~~g~~e~~L~~~f~~A~ 453 (934)
.+.++||+||+||||||+|+++|+.++..... -+|..+... ........++.+++.+.
T Consensus 42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~ 121 (507)
T PRK06645 42 LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAE 121 (507)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999998642110 011111110 01234556777777765
Q ss_pred cC----CCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEe
Q 002337 454 SY----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAA 529 (934)
Q Consensus 454 ~~----~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIat 529 (934)
.. ...|++|||+|.+.. ..+..++ ..++. ....+++|.+
T Consensus 122 ~~P~~~~~KVvIIDEa~~Ls~---------------~a~naLL-k~LEe---------------------pp~~~vfI~a 164 (507)
T PRK06645 122 YKPLQGKHKIFIIDEVHMLSK---------------GAFNALL-KTLEE---------------------PPPHIIFIFA 164 (507)
T ss_pred hccccCCcEEEEEEChhhcCH---------------HHHHHHH-HHHhh---------------------cCCCEEEEEE
Confidence 32 246999999997753 1222222 22221 2456778888
Q ss_pred cCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHH
Q 002337 530 ADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAG 605 (934)
Q Consensus 530 Tn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~ 605 (934)
|+.+..+++.+++|+. .+++..++.++...+++..++.... .. .+..++.++..+.| ..+|+..+++.+.
T Consensus 165 Tte~~kI~~tI~SRc~-~~ef~~ls~~el~~~L~~i~~~egi---~i-e~eAL~~Ia~~s~G-slR~al~~Ldkai 234 (507)
T PRK06645 165 TTEVQKIPATIISRCQ-RYDLRRLSFEEIFKLLEYITKQENL---KT-DIEALRIIAYKSEG-SARDAVSILDQAA 234 (507)
T ss_pred eCChHHhhHHHHhcce-EEEccCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 8888899999999884 8999999999999999988865432 12 24557778887766 6677777776553
No 172
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.02 E-value=1.8e-09 Score=119.17 Aligned_cols=143 Identities=17% Similarity=0.240 Sum_probs=97.3
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccccc--ccchhhhh----------hHHHHHHHHhCCCcEE
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM--YIGESEKN----------VRDIFQKARSARPCVI 747 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~--~~Gese~~----------v~~lf~~A~~~~p~vl 747 (934)
++..+++++|.||||||||++++.+|..++.+++.|++...+.. ++|...-. ....+..|.. .++++
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~il 138 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVAL 138 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEE
Confidence 45567899999999999999999999999999999987655444 45542211 1123444443 46889
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhh-----ccCCc---CCCCCEEEEEEcCCCC------------CCChhhh
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAE-----IDGLN---DSSQDLFIIGASNRPD------------LIDPALL 807 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~-----ldg~~---~~~~~v~vI~aTNrp~------------~lD~all 807 (934)
++||+|..-++ ....++.+|.. +++.. ....++.||||.|..+ .+++|++
T Consensus 139 llDEin~a~p~----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l 208 (327)
T TIGR01650 139 CFDEYDAGRPD----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQM 208 (327)
T ss_pred EechhhccCHH----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence 99999987432 11233344431 11110 1223688999999864 4578999
Q ss_pred CCCCcceeeeecCCCCHHHHHHHHHHHHh
Q 002337 808 RPGRFDKLLYVGVNSDVSYRERVLKALTR 836 (934)
Q Consensus 808 rpGRfd~~i~v~~Pp~~~~r~~Il~~~~~ 836 (934)
. ||-..+.++. |+.+.-.+|+.....
T Consensus 209 D--RF~i~~~~~Y-p~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 209 D--RWSIVTTLNY-LEHDNEAAIVLAKAK 234 (327)
T ss_pred h--heeeEeeCCC-CCHHHHHHHHHhhcc
Confidence 9 9998889998 566667777765543
No 173
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=5.1e-09 Score=123.63 Aligned_cols=174 Identities=17% Similarity=0.271 Sum_probs=110.9
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc----------------------------
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH---------------------------- 424 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~---------------------------- 424 (934)
+.+++.|...+..- +.+..+||+||+|+||||+++.+|+.++..
T Consensus 22 e~vv~~L~~al~~g--------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 22 EHVVRALTHALEQQ--------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred HHHHHHHHHHHHhC--------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence 45666666655321 334557999999999999999999999751
Q ss_pred -EEEEecCccccccccchHHHHHHHHHHhh----cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCC
Q 002337 425 -VVEYSCHNLMASSERKTSAALAQAFNTAQ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPS 499 (934)
Q Consensus 425 -~~~I~~~~L~~~~~g~~e~~L~~~f~~A~----~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~ 499 (934)
+++++.. .......++++.+... .....|++|||+|.|.. .....+|+. ++.
T Consensus 94 DviEIdAa------s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------------~AaNALLKT-LEE- 150 (700)
T PRK12323 94 DYIEMDAA------SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------------HAFNAMLKT-LEE- 150 (700)
T ss_pred cceEeccc------ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------HHHHHHHHh-hcc-
Confidence 1222211 1122344555555443 22347999999998864 122333332 221
Q ss_pred ccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCch
Q 002337 500 AEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSE 579 (934)
Q Consensus 500 ~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~ 579 (934)
...++++|.+||.+..|.+.+++|+ +.+.+..++.++..+.++..+..... ..+ +
T Consensus 151 --------------------PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi---~~d-~ 205 (700)
T PRK12323 151 --------------------PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGI---AHE-V 205 (700)
T ss_pred --------------------CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCC---CCC-H
Confidence 2567889999999999999999998 48999999999988888876643321 111 3
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHH
Q 002337 580 EFVKDIIGQTSGFMPRDLHALVAD 603 (934)
Q Consensus 580 ~~L~~la~~t~Gfv~~DL~~L~~~ 603 (934)
..++.+++.+.| ..+|...++..
T Consensus 206 eAL~~IA~~A~G-s~RdALsLLdQ 228 (700)
T PRK12323 206 NALRLLAQAAQG-SMRDALSLTDQ 228 (700)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHH
Confidence 345556666554 34455555443
No 174
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.02 E-value=1.1e-08 Score=110.84 Aligned_cols=155 Identities=20% Similarity=0.268 Sum_probs=102.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCc---EEEEecCccccccccchHHHHHHHHHHhhcC-----CCEEEEEcchhhccc
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIH---VVEYSCHNLMASSERKTSAALAQAFNTAQSY-----SPTILLLRDFDVFRN 470 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~---~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~-----~P~IL~IDEID~L~~ 470 (934)
+++|.||||||||||||.|+....-+ |++++.. ......+|.+|+.+++. .-.|||||||+.+..
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt-------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk 236 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT-------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK 236 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc-------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh
Confidence 58999999999999999999988665 6666553 34556788999988743 468999999998865
Q ss_pred cccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCC--CCCCChhhhcccceEE
Q 002337 471 LVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADS--SEGLPPTIRRCFSHEI 548 (934)
Q Consensus 471 ~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~--~~~Ld~aLrrrF~~eI 548 (934)
.. +..+.- .+..+.|++||+|+. .-.+..+|.+|+. .+
T Consensus 237 sQ----------------QD~fLP-----------------------~VE~G~I~lIGATTENPSFqln~aLlSRC~-Vf 276 (554)
T KOG2028|consen 237 SQ----------------QDTFLP-----------------------HVENGDITLIGATTENPSFQLNAALLSRCR-VF 276 (554)
T ss_pred hh----------------hhcccc-----------------------eeccCceEEEecccCCCccchhHHHHhccc-ee
Confidence 11 001101 123678899999854 3457889999884 77
Q ss_pred EcCCCCHHHHHHHHHHhcc---ccccc---cCC---CCchHHHHHHHhhcCCCChHHHHHH
Q 002337 549 SMGPLTEQQRVEMLSQLLQ---PVSEL---TSD---TGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 549 ~i~~Pde~~R~~IL~~ll~---~~~~l---~~d---~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
-+.....+....||..-.. ..... .++ .-.+..++.++..+.|=.-.-|..|
T Consensus 277 vLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~L 337 (554)
T KOG2028|consen 277 VLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNAL 337 (554)
T ss_pred EeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHH
Confidence 7777888888888876332 11111 111 0113455667777776544444333
No 175
>PLN03025 replication factor C subunit; Provisional
Probab=99.01 E-value=1.9e-09 Score=120.91 Aligned_cols=153 Identities=20% Similarity=0.195 Sum_probs=96.5
Q ss_pred CcceecCCCCCcchHHHHHHHHHc-----CCcEEEecCccccccccchhhhhhHHHHHHH-H------hCCCcEEEeccc
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESEKNVRDIFQKA-R------SARPCVIFFDEL 752 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A-~------~~~p~vlfiDEi 752 (934)
.+++|+||||||||++|+++|+++ ...++.++.++..+. ..+++..+.. . ...+.|++|||+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~ 108 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEA 108 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEech
Confidence 369999999999999999999986 234666776543211 1233333221 1 124579999999
Q ss_pred cccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHH
Q 002337 753 DSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLK 832 (934)
Q Consensus 753 d~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~ 832 (934)
|.+... ..+.|+..|+... ....+|.+||.++.+.+++++ |+ ..+.|+. ++.++...+++
T Consensus 109 d~lt~~-------------aq~aL~~~lE~~~---~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~-l~~~~l~~~L~ 168 (319)
T PLN03025 109 DSMTSG-------------AQQALRRTMEIYS---NTTRFALACNTSSKIIEPIQS--RC-AIVRFSR-LSDQEILGRLM 168 (319)
T ss_pred hhcCHH-------------HHHHHHHHHhccc---CCceEEEEeCCccccchhHHH--hh-hcccCCC-CCHHHHHHHHH
Confidence 998521 2234444454332 234455677888888899998 77 4677874 66777777777
Q ss_pred HHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHH
Q 002337 833 ALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 833 ~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
...++.++. .+..+..++..+ ++|++.+++.
T Consensus 169 ~i~~~egi~i~~~~l~~i~~~~-----~gDlR~aln~ 200 (319)
T PLN03025 169 KVVEAEKVPYVPEGLEAIIFTA-----DGDMRQALNN 200 (319)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc-----CCCHHHHHHH
Confidence 776654432 222366677663 3566665544
No 176
>PRK06893 DNA replication initiation factor; Validated
Probab=99.00 E-value=3.7e-09 Score=112.86 Aligned_cols=147 Identities=13% Similarity=0.179 Sum_probs=92.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccCC
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNE 475 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~ 475 (934)
.++|+||||||||+|++++|+++ +.....++.... .......++... ...+++|||++.+....
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~--- 107 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNE--- 107 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCCh---
Confidence 48999999999999999999986 334444444211 111123333332 35799999999876411
Q ss_pred CCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCC---hhhhccc--ceEEEc
Q 002337 476 SLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLP---PTIRRCF--SHEISM 550 (934)
Q Consensus 476 ~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld---~aLrrrF--~~eI~i 550 (934)
.....+..+++...+ .+..+++++++..|..++ +++++|+ ...+.+
T Consensus 108 -------~~~~~l~~l~n~~~~----------------------~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l 158 (229)
T PRK06893 108 -------EWELAIFDLFNRIKE----------------------QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQL 158 (229)
T ss_pred -------HHHHHHHHHHHHHHH----------------------cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeC
Confidence 112234444443321 133456777777776654 7898875 358899
Q ss_pred CCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC
Q 002337 551 GPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (934)
Q Consensus 551 ~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G 591 (934)
+.|+.++|.+|++..+..... .. .++.+..++++..|
T Consensus 159 ~~pd~e~~~~iL~~~a~~~~l---~l-~~~v~~~L~~~~~~ 195 (229)
T PRK06893 159 NDLTDEQKIIVLQRNAYQRGI---EL-SDEVANFLLKRLDR 195 (229)
T ss_pred CCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHhccC
Confidence 999999999999987753321 12 24445666666553
No 177
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.99 E-value=2.4e-10 Score=112.00 Aligned_cols=110 Identities=30% Similarity=0.471 Sum_probs=70.0
Q ss_pred cceecCCCCCcchHHHHHHHHHcCCcEEEecCcc------ccccccc---hhhhhhHHHHHHHHhCCCcEEEeccccccc
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPE------LINMYIG---ESEKNVRDIFQKARSARPCVIFFDELDSLA 756 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~------l~~~~~G---ese~~v~~lf~~A~~~~p~vlfiDEid~l~ 756 (934)
+|+|+||||||||++|+.+|+.++.+++.+.++. |+..|.- ..+-.-..+...++ .++++||||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 5899999999999999999999999998888754 3333331 11111011111111 56899999998764
Q ss_pred cCCCCCCCCchhHHHHHHhhhhhccCCc----------CCCC------CEEEEEEcCCCC----CCChhhhCCCCc
Q 002337 757 PARGASGDSGGVMDRVVSQMLAEIDGLN----------DSSQ------DLFIIGASNRPD----LIDPALLRPGRF 812 (934)
Q Consensus 757 ~~r~~~~~~~~~~~~v~~~lL~~ldg~~----------~~~~------~v~vI~aTNrp~----~lD~allrpGRf 812 (934)
..++..|+..++.-. .... ++.+|||+|..+ .+++|+++ ||
T Consensus 79 -------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 234444444443211 0111 389999999998 89999999 97
No 178
>PLN03025 replication factor C subunit; Provisional
Probab=98.98 E-value=9.1e-09 Score=115.38 Aligned_cols=152 Identities=18% Similarity=0.222 Sum_probs=98.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhC-----CcEEEEecCccccccccchHHHHHHHHHH-hh------cCCCEEEEEcchh
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLG-----IHVVEYSCHNLMASSERKTSAALAQAFNT-AQ------SYSPTILLLRDFD 466 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg-----~~~~~I~~~~L~~~~~g~~e~~L~~~f~~-A~------~~~P~IL~IDEID 466 (934)
++||+|||||||||+++++|+++. ..+++++.++..+ ...++..... +. .....+++|||+|
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d 109 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEAD 109 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechh
Confidence 589999999999999999999972 2355666554221 1223333222 11 1235799999999
Q ss_pred hccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccce
Q 002337 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSH 546 (934)
Q Consensus 467 ~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~ 546 (934)
.+.. .....|.++++.. ...+.+|.+||....+.+++++|+.
T Consensus 110 ~lt~----------------~aq~aL~~~lE~~---------------------~~~t~~il~~n~~~~i~~~L~SRc~- 151 (319)
T PLN03025 110 SMTS----------------GAQQALRRTMEIY---------------------SNTTRFALACNTSSKIIEPIQSRCA- 151 (319)
T ss_pred hcCH----------------HHHHHHHHHHhcc---------------------cCCceEEEEeCCccccchhHHHhhh-
Confidence 8764 1123333443311 2334567788888889999999874
Q ss_pred EEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHH
Q 002337 547 EISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVA 602 (934)
Q Consensus 547 eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~ 602 (934)
.+.++.|+.++....++..++.... ..+ +..++.++..+. +|++.+..
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi---~i~-~~~l~~i~~~~~----gDlR~aln 199 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKV---PYV-PEGLEAIIFTAD----GDMRQALN 199 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcC----CCHHHHHH
Confidence 8999999999999999887754332 122 445667776654 35544443
No 179
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=2.1e-08 Score=114.47 Aligned_cols=175 Identities=21% Similarity=0.283 Sum_probs=109.9
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEE
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEY 428 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~------------------------~~~I 428 (934)
+.+++.|...+.. -+.+..+||+||+|+||||+|+++|+.+... ++.+
T Consensus 22 ~~~~~~l~~~~~~--------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~ 93 (363)
T PRK14961 22 KHIVTAISNGLSL--------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI 93 (363)
T ss_pred HHHHHHHHHHHHc--------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence 3556666555431 1234468999999999999999999998632 1222
Q ss_pred ecCccccccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccc
Q 002337 429 SCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (934)
Q Consensus 429 ~~~~L~~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~ 504 (934)
+.. .......++++.+.+.. ....+++|||+|.+.. .....+++ .++.
T Consensus 94 ~~~------~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~---------------~a~naLLk-~lEe------ 145 (363)
T PRK14961 94 DAA------SRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR---------------HSFNALLK-TLEE------ 145 (363)
T ss_pred ccc------ccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH---------------HHHHHHHH-HHhc------
Confidence 111 11233445666555432 1235999999997753 11222332 2221
Q ss_pred cccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHH
Q 002337 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (934)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~ 584 (934)
....+.+|.+|+.++.+.+.+++|+ ..+.+++|+.++..++++..++.... .. .+..++.
T Consensus 146 ---------------~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~---~i-~~~al~~ 205 (363)
T PRK14961 146 ---------------PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESI---DT-DEYALKL 205 (363)
T ss_pred ---------------CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHH
Confidence 1445677777888888999999988 48999999999999999887754321 12 2445666
Q ss_pred HHhhcCCCChHHHHHHHHHH
Q 002337 585 IIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 585 la~~t~Gfv~~DL~~L~~~A 604 (934)
++..+.| ..++...++..+
T Consensus 206 ia~~s~G-~~R~al~~l~~~ 224 (363)
T PRK14961 206 IAYHAHG-SMRDALNLLEHA 224 (363)
T ss_pred HHHHcCC-CHHHHHHHHHHH
Confidence 7777665 455555555543
No 180
>PRK05642 DNA replication initiation factor; Validated
Probab=98.98 E-value=5.2e-09 Score=112.08 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=99.4
Q ss_pred CcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCC
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGA 761 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~ 761 (934)
..++|+||+|+|||+|++++++++ +..+++++..++... ...+.+..+.. .+|+|||++.+.++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~--d~LiiDDi~~~~~~~~- 114 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQY--ELVCLDDLDVIAGKAD- 114 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhhC--CEEEEechhhhcCChH-
Confidence 578999999999999999998754 567888887776542 12333444333 5899999998864321
Q ss_pred CCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCC---CChhhhCCCCcceeeeecC-CCCHHHHHHHHHHHHhc
Q 002337 762 SGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL---IDPALLRPGRFDKLLYVGV-NSDVSYRERVLKALTRK 837 (934)
Q Consensus 762 ~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~---lD~allrpGRfd~~i~v~~-Pp~~~~r~~Il~~~~~~ 837 (934)
....+-.++ +.... .+..+||+++..|.. +.|.|++ ||...+.+.+ ||+.+.|..|++.....
T Consensus 115 -------~~~~Lf~l~---n~~~~-~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 115 -------WEEALFHLF---NRLRD-SGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred -------HHHHHHHHH---HHHHh-cCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 112222333 22222 235677777766643 3689998 9976555543 56888999999855544
Q ss_pred C--CCCcCCCHHHHHhhCCCCCCHHHHHHHHHH
Q 002337 838 F--KLLEDVSLYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 838 ~--~~~~~~~l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
. .+.+ .-++.+++++ .-+++.+..++..
T Consensus 182 ~~~~l~~-ev~~~L~~~~--~~d~r~l~~~l~~ 211 (234)
T PRK05642 182 RGLHLTD-EVGHFILTRG--TRSMSALFDLLER 211 (234)
T ss_pred cCCCCCH-HHHHHHHHhc--CCCHHHHHHHHHH
Confidence 3 3332 2366777763 3455666666554
No 181
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=1.7e-08 Score=115.63 Aligned_cols=184 Identities=17% Similarity=0.176 Sum_probs=113.4
Q ss_pred chHHHHHHHHHhhccC-CCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEE-EEec--------------Ccccc
Q 002337 372 QGDTVKILASILAPTL-CPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVV-EYSC--------------HNLMA 435 (934)
Q Consensus 372 ~~~~~~~L~~il~p~l-~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~-~I~~--------------~~L~~ 435 (934)
++.+++.|...+..-. ++..++.+.+.++||+||+|+|||++|+++|+.+...-. .-.| +++.-
T Consensus 10 q~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~ 89 (394)
T PRK07940 10 QEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRV 89 (394)
T ss_pred hHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 3456666766664322 233334456778999999999999999999998744210 0001 11110
Q ss_pred ---ccccchHHHHHHHHHHhhcC----CCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccC
Q 002337 436 ---SSERKTSAALAQAFNTAQSY----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESH 508 (934)
Q Consensus 436 ---~~~g~~e~~L~~~f~~A~~~----~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~ 508 (934)
.........++++++.+... ...|++|||+|.+... ....+| ..++.
T Consensus 90 i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~---------------aanaLL-k~LEe---------- 143 (394)
T PRK07940 90 VAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER---------------AANALL-KAVEE---------- 143 (394)
T ss_pred eccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH---------------HHHHHH-HHhhc----------
Confidence 00112344577777766531 2359999999988641 112222 23221
Q ss_pred CCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhh
Q 002337 509 GYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQ 588 (934)
Q Consensus 509 g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~ 588 (934)
. ..++++|.+|++++.+.|.+++|+ +.+.+++|+.++..+++.... . .+ ...+..++..
T Consensus 144 ----------p-~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~~---~-----~~-~~~a~~la~~ 202 (394)
T PRK07940 144 ----------P-PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRRD---G-----VD-PETARRAARA 202 (394)
T ss_pred ----------C-CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHhc---C-----CC-HHHHHHHHHH
Confidence 1 233445555556899999999998 499999999999877776321 1 11 3345678888
Q ss_pred cCCCChHHHHHHHH
Q 002337 589 TSGFMPRDLHALVA 602 (934)
Q Consensus 589 t~Gfv~~DL~~L~~ 602 (934)
++|..+..+..+..
T Consensus 203 s~G~~~~A~~l~~~ 216 (394)
T PRK07940 203 SQGHIGRARRLATD 216 (394)
T ss_pred cCCCHHHHHHHhcC
Confidence 89988877666544
No 182
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.97 E-value=4.3e-09 Score=102.10 Aligned_cols=125 Identities=21% Similarity=0.339 Sum_probs=82.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccchHHH---HHHHHHHhhcCCCEEEEEcchhhcc
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAA---LAQAFNTAQSYSPTILLLRDFDVFR 469 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~~e~~---L~~~f~~A~~~~P~IL~IDEID~L~ 469 (934)
.+.+++++||||||||++++.+++.+ +.+++.+++.+............ ....+..+....+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 34569999999999999999999999 88999999886554322211111 1222233444578999999999763
Q ss_pred ccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC--CCChhhhcccceE
Q 002337 470 NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE--GLPPTIRRCFSHE 547 (934)
Q Consensus 470 ~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~--~Ld~aLrrrF~~e 547 (934)
. .....+...+..+... ......+.+|++++... .+++.+.+||+..
T Consensus 98 ~------------~~~~~~~~~i~~~~~~-------------------~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~ 146 (151)
T cd00009 98 R------------GAQNALLRVLETLNDL-------------------RIDRENVRVIGATNRPLLGDLDRALYDRLDIR 146 (151)
T ss_pred H------------HHHHHHHHHHHhcCce-------------------eccCCCeEEEEecCccccCCcChhHHhhhccE
Confidence 2 0112333333332210 01135678888888777 6888899999877
Q ss_pred EEcC
Q 002337 548 ISMG 551 (934)
Q Consensus 548 I~i~ 551 (934)
+.++
T Consensus 147 i~~~ 150 (151)
T cd00009 147 IVIP 150 (151)
T ss_pred eecC
Confidence 7776
No 183
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.97 E-value=4.3e-10 Score=128.82 Aligned_cols=174 Identities=21% Similarity=0.335 Sum_probs=117.1
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccc---------cccccchhhhhhH---HHHHHHHhCCCcEEE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPEL---------INMYIGESEKNVR---DIFQKARSARPCVIF 748 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l---------~~~~~Gese~~v~---~lf~~A~~~~p~vlf 748 (934)
...||+.|++||||.++|++|-... +.+|+.|||..+ ++.--|....+.. -.|+.|.+. +||
T Consensus 164 ~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLf 240 (464)
T COG2204 164 DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANGG---TLF 240 (464)
T ss_pred CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcCCc---eEE
Confidence 5789999999999999999996554 569999999554 3332222222222 256666554 999
Q ss_pred eccccccccCCCCCCCCchhHHHHHHhhhhh--------ccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeee---
Q 002337 749 FDELDSLAPARGASGDSGGVMDRVVSQMLAE--------IDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLY--- 817 (934)
Q Consensus 749 iDEid~l~~~r~~~~~~~~~~~~v~~~lL~~--------ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~--- 817 (934)
+|||..+.. .+...||+- +.|.....-+|.||+|||+. | .+....|||-.-+|
T Consensus 241 LDEI~~mpl-------------~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~d--L-~~~v~~G~FReDLyyRL 304 (464)
T COG2204 241 LDEIGEMPL-------------ELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRD--L-EEEVAAGRFREDLYYRL 304 (464)
T ss_pred eeccccCCH-------------HHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcC--H-HHHHHcCCcHHHHHhhh
Confidence 999988852 233444433 33333344579999999974 2 34444588866544
Q ss_pred ----ecCCCCHHHHHHHH---HHHHhc----CC-CCcCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHHHHH
Q 002337 818 ----VGVNSDVSYRERVL---KALTRK----FK-LLEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHAAKR 876 (934)
Q Consensus 818 ----v~~Pp~~~~r~~Il---~~~~~~----~~-~~~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A~~r 876 (934)
+.+||-.+++++|. .+++++ .+ -...++-..++..+++.|-| ++|.|+|.+|+..+-..
T Consensus 305 nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~~~ 377 (464)
T COG2204 305 NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSEGP 377 (464)
T ss_pred ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCcc
Confidence 55689999999884 444443 22 23456666777766788888 79999999988777544
No 184
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=1.4e-08 Score=120.00 Aligned_cols=175 Identities=17% Similarity=0.239 Sum_probs=113.7
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEE
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEY 428 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~------------------------~~~I 428 (934)
+.+++.|...+.-- +.+..+||+||+|+||||+|+++|+.++.. ++++
T Consensus 22 ~~v~~~L~~~~~~~--------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 22 APVVRALSNALDQQ--------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred HHHHHHHHHHHHhC--------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 45666666665321 334468999999999999999999998642 3333
Q ss_pred ecCccccccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccc
Q 002337 429 SCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (934)
Q Consensus 429 ~~~~L~~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~ 504 (934)
+.. .......++.+.+.+.. ....|++|||+|.|.. .....++ +.++.
T Consensus 94 daa------s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~---------------~a~naLL-k~LEe------ 145 (509)
T PRK14958 94 DAA------SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG---------------HSFNALL-KTLEE------ 145 (509)
T ss_pred ccc------ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH---------------HHHHHHH-HHHhc------
Confidence 332 12233445666554432 1235999999998865 1222333 33321
Q ss_pred cccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHH
Q 002337 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (934)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~ 584 (934)
....+.+|.+|+.+..+++.+++|+. .+.+..++..+....++..++.... .. .+..+..
T Consensus 146 ---------------pp~~~~fIlattd~~kl~~tI~SRc~-~~~f~~l~~~~i~~~l~~il~~egi---~~-~~~al~~ 205 (509)
T PRK14958 146 ---------------PPSHVKFILATTDHHKLPVTVLSRCL-QFHLAQLPPLQIAAHCQHLLKEENV---EF-ENAALDL 205 (509)
T ss_pred ---------------cCCCeEEEEEECChHhchHHHHHHhh-hhhcCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHH
Confidence 14567788888889999999999884 7889988898888887777754322 11 2344666
Q ss_pred HHhhcCCCChHHHHHHHHHH
Q 002337 585 IIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 585 la~~t~Gfv~~DL~~L~~~A 604 (934)
++..+.| ..+|...++..+
T Consensus 206 ia~~s~G-slR~al~lLdq~ 224 (509)
T PRK14958 206 LARAANG-SVRDALSLLDQS 224 (509)
T ss_pred HHHHcCC-cHHHHHHHHHHH
Confidence 7766654 667777777655
No 185
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=2.3e-08 Score=116.70 Aligned_cols=176 Identities=20% Similarity=0.270 Sum_probs=116.7
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCC------------------------cEEEE
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGI------------------------HVVEY 428 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~------------------------~~~~I 428 (934)
+.+++.|...+.. -+.+.++||+||+|+||||+|+++|+.++. +++++
T Consensus 19 e~vv~~L~~a~~~--------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 19 DVLVRILRNAFTL--------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHHHHHHHHHHHc--------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 4566666554431 134557999999999999999999997632 34444
Q ss_pred ecCccccccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccc
Q 002337 429 SCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (934)
Q Consensus 429 ~~~~L~~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~ 504 (934)
+..+ ......++.+.+.+.. ....+++|||+|.|.. ..+..++ ..++.
T Consensus 91 daas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~---------------~A~NaLL-K~LEe------ 142 (491)
T PRK14964 91 DAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN---------------SAFNALL-KTLEE------ 142 (491)
T ss_pred eccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH---------------HHHHHHH-HHHhC------
Confidence 4432 2234556777666642 2346999999997754 1222333 33321
Q ss_pred cccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHH
Q 002337 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (934)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~ 584 (934)
....+.+|.+|+.+..+++.+++|+. .+.+..++.++....++..++.... .. .+..++.
T Consensus 143 ---------------Pp~~v~fIlatte~~Kl~~tI~SRc~-~~~f~~l~~~el~~~L~~ia~~Egi---~i-~~eAL~l 202 (491)
T PRK14964 143 ---------------PAPHVKFILATTEVKKIPVTIISRCQ-RFDLQKIPTDKLVEHLVDIAKKENI---EH-DEESLKL 202 (491)
T ss_pred ---------------CCCCeEEEEEeCChHHHHHHHHHhhe-eeecccccHHHHHHHHHHHHHHcCC---CC-CHHHHHH
Confidence 14567788888888999999999985 7999999999999998887754332 12 2445677
Q ss_pred HHhhcCCCChHHHHHHHHHHH
Q 002337 585 IIGQTSGFMPRDLHALVADAG 605 (934)
Q Consensus 585 la~~t~Gfv~~DL~~L~~~A~ 605 (934)
++..+.| ..+|+..++..+.
T Consensus 203 Ia~~s~G-slR~alslLdqli 222 (491)
T PRK14964 203 IAENSSG-SMRNALFLLEQAA 222 (491)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 7777755 6666666666543
No 186
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.96 E-value=7.6e-09 Score=120.64 Aligned_cols=156 Identities=13% Similarity=0.264 Sum_probs=100.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEecCccccccccch-HHHHHHHHHHhhcCCCEEEEEcchhhcccc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKT-SAALAQAFNTAQSYSPTILLLRDFDVFRNL 471 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el-----g~~~~~I~~~~L~~~~~g~~-e~~L~~~f~~A~~~~P~IL~IDEID~L~~~ 471 (934)
.+++||||+|+|||+|++++++++ +..++.+++.+++....... ...+.. |.......+.+|+|||++.+...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 359999999999999999999986 45678888876554332111 111222 22211235789999999987541
Q ss_pred ccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCC---CChhhhcccce--
Q 002337 472 VSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG---LPPTIRRCFSH-- 546 (934)
Q Consensus 472 ~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~---Ld~aLrrrF~~-- 546 (934)
. +...++...++.+.+ .+..+|+++.+.|.. +.+.+++||..
T Consensus 210 ~----------~~q~elf~~~n~l~~-----------------------~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl 256 (440)
T PRK14088 210 T----------GVQTELFHTFNELHD-----------------------SGKQIVICSDREPQKLSEFQDRLVSRFQMGL 256 (440)
T ss_pred H----------HHHHHHHHHHHHHHH-----------------------cCCeEEEECCCCHHHHHHHHHHHhhHHhcCc
Confidence 1 122345555554432 234566666666655 55778888753
Q ss_pred EEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC
Q 002337 547 EISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (934)
Q Consensus 547 eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G 591 (934)
.+.+.+||.+.|.+|++..++.... .+ .++.++.+|....|
T Consensus 257 ~v~i~~pd~e~r~~IL~~~~~~~~~---~l-~~ev~~~Ia~~~~~ 297 (440)
T PRK14088 257 VAKLEPPDEETRKKIARKMLEIEHG---EL-PEEVLNFVAENVDD 297 (440)
T ss_pred eEeeCCCCHHHHHHHHHHHHHhcCC---CC-CHHHHHHHHhcccc
Confidence 6789999999999999988764322 22 24556777777665
No 187
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.96 E-value=6.4e-08 Score=103.10 Aligned_cols=154 Identities=14% Similarity=0.186 Sum_probs=95.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccc
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLV 472 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~ 472 (934)
...+++|+||+|||||+|+++++++. +..+..+++.++... +.. ...+.+++|||+|.+...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~~~- 105 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLDDA- 105 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcCch-
Confidence 34579999999999999999999976 667888888653211 111 124578999999976430
Q ss_pred cCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhccc-EEEEEecCCCC--CCChhhhccc--ceE
Q 002337 473 SNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ-VLLVAAADSSE--GLPPTIRRCF--SHE 547 (934)
Q Consensus 473 ~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~-ViVIatTn~~~--~Ld~aLrrrF--~~e 547 (934)
....+..+++... ..+. +++++++..+. .+.+.+++|| ...
T Consensus 106 -----------~~~~L~~~~~~~~-----------------------~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~ 151 (227)
T PRK08903 106 -----------QQIALFNLFNRVR-----------------------AHGQGALLVAGPAAPLALPLREDLRTRLGWGLV 151 (227)
T ss_pred -----------HHHHHHHHHHHHH-----------------------HcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeE
Confidence 1123333333221 1233 34444443332 3567788777 468
Q ss_pred EEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHH
Q 002337 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVAD 603 (934)
Q Consensus 548 I~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~ 603 (934)
+.+++|+++++..+++.+...... .. .+..+..++...+ -..+.+..+++.
T Consensus 152 i~l~pl~~~~~~~~l~~~~~~~~v---~l-~~~al~~L~~~~~-gn~~~l~~~l~~ 202 (227)
T PRK08903 152 YELKPLSDADKIAALKAAAAERGL---QL-ADEVPDYLLTHFR-RDMPSLMALLDA 202 (227)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHhcc-CCHHHHHHHHHH
Confidence 999999999999999876543221 12 2445666776433 344455555543
No 188
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=6.5e-09 Score=123.04 Aligned_cols=159 Identities=17% Similarity=0.254 Sum_probs=103.5
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC------------------------cEEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL------------------------NFLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~------------------------~~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+..+||+||+|+|||++|+++|+.++. .++.+++++- ..-..+|++.+.+
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~ 110 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNV 110 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHH
Confidence 467899999999999999999998754 2344443211 1223466666655
Q ss_pred Hh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 RS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
.. .+..|++|||+|.|.. ...+.||..|+.. ...+.+|.+|+.+..+.+.+++ |+ ..
T Consensus 111 ~y~P~~gk~KV~IIDEVh~LS~-------------~A~NALLKtLEEP---P~~v~FILaTtd~~kIp~TIlS--RC-q~ 171 (702)
T PRK14960 111 PYAPTQGRFKVYLIDEVHMLST-------------HSFNALLKTLEEP---PEHVKFLFATTDPQKLPITVIS--RC-LQ 171 (702)
T ss_pred hhhhhcCCcEEEEEechHhcCH-------------HHHHHHHHHHhcC---CCCcEEEEEECChHhhhHHHHH--hh-he
Confidence 32 3457999999998842 2456677776654 2456666677778888888887 77 45
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCCc-CCCHHHHHhhCCCCCCHHHHHHHHHHHH
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLLE-DVSLYSIAKKCPPNFTGADMYALCADAW 870 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~t~g~sgaDl~~l~~~A~ 870 (934)
+.|.. .+.++-...++..+++.++.- +..+..+|+.+ +-+.+++.+++..+.
T Consensus 172 feFkp-Ls~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S--~GdLRdALnLLDQaI 224 (702)
T PRK14960 172 FTLRP-LAVDEITKHLGAILEKEQIAADQDAIWQIAESA--QGSLRDALSLTDQAI 224 (702)
T ss_pred eeccC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 66763 666677777776666554432 23366777763 446666666665443
No 189
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.95 E-value=8.2e-10 Score=126.30 Aligned_cols=170 Identities=22% Similarity=0.372 Sum_probs=112.9
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccc---------ccc----ccchhhhhhHHHHHHHHhCCCcE
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPEL---------INM----YIGESEKNVRDIFQKARSARPCV 746 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l---------~~~----~~Gese~~v~~lf~~A~~~~p~v 746 (934)
....||+.|.+||||.++|+++-+.. +.+|+.+||..+ ++. |.|.....-.-+|+.|... .
T Consensus 267 tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---T 343 (560)
T COG3829 267 TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGG---T 343 (560)
T ss_pred CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCC---e
Confidence 46799999999999999999996654 679999999543 333 3333333234578877665 8
Q ss_pred EEeccccccccCCCCCCCCchhHHHHHHhhhhh--------ccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeee-
Q 002337 747 IFFDELDSLAPARGASGDSGGVMDRVVSQMLAE--------IDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLY- 817 (934)
Q Consensus 747 lfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~--------ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~- 817 (934)
||+|||..+. -.+...||+- +.|......+|.||+|||+. ...+...|||-+-+|
T Consensus 344 LFLDEIgemp-------------l~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~n---L~~~i~~G~FReDLYY 407 (560)
T COG3829 344 LFLDEIGEMP-------------LPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRN---LEKMIAEGTFREDLYY 407 (560)
T ss_pred EEehhhccCC-------------HHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcC---HHHHHhcCcchhhhee
Confidence 9999998874 2344445443 33444445689999999985 234556689977666
Q ss_pred ------ecCCCCHHHHHHHH---HHHH----hcCCC-CcCCCHHHHHhhCCCCCCH--HHHHHHHHHHHH
Q 002337 818 ------VGVNSDVSYRERVL---KALT----RKFKL-LEDVSLYSIAKKCPPNFTG--ADMYALCADAWF 871 (934)
Q Consensus 818 ------v~~Pp~~~~r~~Il---~~~~----~~~~~-~~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~ 871 (934)
+.+||-.++.++|. ..++ ++++- ...+.-+.++....+.|-| ++|++++.+|+.
T Consensus 408 RLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 408 RLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred eeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 44588888887774 2333 33321 2223333333333356777 899999988875
No 190
>PRK08727 hypothetical protein; Validated
Probab=98.95 E-value=1.1e-08 Score=109.59 Aligned_cols=151 Identities=20% Similarity=0.217 Sum_probs=92.1
Q ss_pred CcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCC
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGA 761 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~ 761 (934)
..++|+||+|||||+++.+++.+. +...++++..++. ..+.+.++... ...+|+|||++.+..++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~--~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALE--GRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHh--cCCEEEEeCcccccCChH-
Confidence 459999999999999999997654 5555666644432 23344555543 346999999998874321
Q ss_pred CCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCC---CChhhhCCCCcce--eeeecCCCCHHHHHHHHHHHHh
Q 002337 762 SGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL---IDPALLRPGRFDK--LLYVGVNSDVSYRERVLKALTR 836 (934)
Q Consensus 762 ~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~---lD~allrpGRfd~--~i~v~~Pp~~~~r~~Il~~~~~ 836 (934)
....+-.++..+. .. +.-+|+.+...|.. ++|+|.+ ||.. .+.++ ||+.+.+.+|++....
T Consensus 111 -------~~~~lf~l~n~~~---~~-~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~-~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 111 -------DEVALFDFHNRAR---AA-GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLP-VLDDVARAAVLRERAQ 176 (233)
T ss_pred -------HHHHHHHHHHHHH---Hc-CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEec-CCCHHHHHHHHHHHHH
Confidence 1122223333321 11 11234434445554 4799998 9844 55666 5889999999997665
Q ss_pred cCCCCc-CCCHHHHHhhCCCCCCHHHHHHH
Q 002337 837 KFKLLE-DVSLYSIAKKCPPNFTGADMYAL 865 (934)
Q Consensus 837 ~~~~~~-~~~l~~la~~~t~g~sgaDl~~l 865 (934)
...+.- +..+..|++++ ++|++.+
T Consensus 177 ~~~l~l~~e~~~~La~~~-----~rd~r~~ 201 (233)
T PRK08727 177 RRGLALDEAAIDWLLTHG-----ERELAGL 201 (233)
T ss_pred HcCCCCCHHHHHHHHHhC-----CCCHHHH
Confidence 433322 22367788774 2455555
No 191
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3e-09 Score=127.99 Aligned_cols=153 Identities=24% Similarity=0.410 Sum_probs=119.1
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHHc----------CCcEEEecCccccc--cccchhhhhhHHHHHHHHhCCCcEE
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELIN--MYIGESEKNVRDIFQKARSARPCVI 747 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~~--~~~Gese~~v~~lf~~A~~~~p~vl 747 (934)
..+...+-+|+|+||+|||.++..+|... +..+++++...+.. +|-|+.|..++.+.+..+...+.||
T Consensus 187 ~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vIL 266 (786)
T COG0542 187 SRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVIL 266 (786)
T ss_pred hccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEE
Confidence 34456788999999999999999999865 55678888777754 6999999999999999998889999
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC-----CCChhhhCCCCcceeeeecCCC
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNS 822 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~-----~lD~allrpGRfd~~i~v~~Pp 822 (934)
||||++.+.+..+..|+ +.-...++...|. ...+-+||||..-+ .-|+||-| ||. .|++.- |
T Consensus 267 FIDEiHtiVGAG~~~G~-a~DAaNiLKPaLA--------RGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~E-P 333 (786)
T COG0542 267 FIDEIHTIVGAGATEGG-AMDAANLLKPALA--------RGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDE-P 333 (786)
T ss_pred EEechhhhcCCCccccc-ccchhhhhHHHHh--------cCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCC-C
Confidence 99999999987654332 1112345555544 35688999997544 56999999 996 577774 8
Q ss_pred CHHHHHHHHHHHHhcCCCCcCCC
Q 002337 823 DVSYRERVLKALTRKFKLLEDVS 845 (934)
Q Consensus 823 ~~~~r~~Il~~~~~~~~~~~~~~ 845 (934)
+.+.-..||+-+-.++..+..|.
T Consensus 334 s~e~ti~ILrGlk~~yE~hH~V~ 356 (786)
T COG0542 334 SVEDTIAILRGLKERYEAHHGVR 356 (786)
T ss_pred CHHHHHHHHHHHHHHHHHccCce
Confidence 89999999999888876555543
No 192
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.94 E-value=2.4e-09 Score=113.49 Aligned_cols=166 Identities=20% Similarity=0.311 Sum_probs=104.0
Q ss_pred CcceecCCCCCcchHHHHHHHHHc-----CCcEEEecCccccccccchhhh-hhHHHHHHHHhCCCcEEEeccccccccC
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESEK-NVRDIFQKARSARPCVIFFDELDSLAPA 758 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~~Gese~-~v~~lf~~A~~~~p~vlfiDEid~l~~~ 758 (934)
..++||||+|+|||+|.+|++++. +..++++++.++...+...... .+.++.+..+ ...+|+||+++.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc
Confidence 458999999999999999998764 5678999988887766543322 2333333333 4469999999999633
Q ss_pred CCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCC---CChhhhCCCCcceeeeecC-CCCHHHHHHHHHHH
Q 002337 759 RGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL---IDPALLRPGRFDKLLYVGV-NSDVSYRERVLKAL 834 (934)
Q Consensus 759 r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~---lD~allrpGRfd~~i~v~~-Pp~~~~r~~Il~~~ 834 (934)
.+....|...++.+... +.-+|+++...|.. ++|.|.+ ||..-+.+.+ ||+.+.|.+|++..
T Consensus 113 -----------~~~q~~lf~l~n~~~~~-~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 113 -----------QRTQEELFHLFNRLIES-GKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp -----------HHHHHHHHHHHHHHHHT-TSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHHhh-CCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHH
Confidence 12233333333333333 34556666566654 5688888 9987655554 78999999999988
Q ss_pred HhcCCCCcCCC-HHHHHhhCCCCCCHHHHHHHHHH
Q 002337 835 TRKFKLLEDVS-LYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 835 ~~~~~~~~~~~-l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
.+..++.-+.+ +..++.++ .-+-++|..++..
T Consensus 179 a~~~~~~l~~~v~~~l~~~~--~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 179 AKERGIELPEEVIEYLARRF--RRDVRELEGALNR 211 (219)
T ss_dssp HHHTT--S-HHHHHHHHHHT--TSSHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHhh--cCCHHHHHHHHHH
Confidence 87665543333 55677764 3366677776655
No 193
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.94 E-value=5.1e-10 Score=109.69 Aligned_cols=126 Identities=24% Similarity=0.306 Sum_probs=71.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcccc------ccccc--hHHHHHHHHHHhhcCCCEEEEEcchhhccc
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA------SSERK--TSAALAQAFNTAQSYSPTILLLRDFDVFRN 470 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~------~~~g~--~e~~L~~~f~~A~~~~P~IL~IDEID~L~~ 470 (934)
+|+|+||||||||++++.+|+.++.++..++++.... .+.-. ........+..+. ..+++++|||++...+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~~ 79 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAPP 79 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG--H
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCCH
Confidence 5899999999999999999999999999999985332 11100 0000000000011 1479999999995433
Q ss_pred cccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhh-hhhhcccEEEEEecCCCC----CCChhhhccc
Q 002337 471 LVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEI-EKICRQQVLLVAAADSSE----GLPPTIRRCF 544 (934)
Q Consensus 471 ~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~-~~~~~~~ViVIatTn~~~----~Ld~aLrrrF 544 (934)
++...|..+++..... ...+....... .......+.+|||+|... .+++++++||
T Consensus 80 ----------------~v~~~L~~ll~~~~~~---~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 80 ----------------EVLESLLSLLEERRIQ---LPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp ----------------HHHHTTHHHHSSSEEE---E-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ----------------HHHHHHHHHHhhCccc---ccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 5555555555432100 00000000000 001122589999999988 7999999997
No 194
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=2.2e-08 Score=119.82 Aligned_cols=174 Identities=20% Similarity=0.342 Sum_probs=112.2
Q ss_pred chHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc---------------------------
Q 002337 372 QGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH--------------------------- 424 (934)
Q Consensus 372 ~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~--------------------------- 424 (934)
++.+++.|...+..- +.+..+||+||+|+||||+++++|+.++..
T Consensus 21 Qe~vv~~L~~~l~~~--------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h 92 (618)
T PRK14951 21 QEHVVQALTNALTQQ--------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRF 92 (618)
T ss_pred cHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCC
Confidence 456677777665422 233457999999999999999999998641
Q ss_pred --EEEEecCccccccccchHHHHHHHHHHhhcCCC-----EEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcC
Q 002337 425 --VVEYSCHNLMASSERKTSAALAQAFNTAQSYSP-----TILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTE 497 (934)
Q Consensus 425 --~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P-----~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~ 497 (934)
+++++.. .......++++.+.+. +.| .|++|||+|.|.. .....++ ..++
T Consensus 93 ~D~~eldaa------s~~~Vd~iReli~~~~-~~p~~g~~KV~IIDEvh~Ls~---------------~a~NaLL-KtLE 149 (618)
T PRK14951 93 VDYTELDAA------SNRGVDEVQQLLEQAV-YKPVQGRFKVFMIDEVHMLTN---------------TAFNAML-KTLE 149 (618)
T ss_pred CceeecCcc------cccCHHHHHHHHHHHH-hCcccCCceEEEEEChhhCCH---------------HHHHHHH-Hhcc
Confidence 1222211 1123345666666554 233 5999999998764 1222233 3332
Q ss_pred CCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCC
Q 002337 498 PSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTG 577 (934)
Q Consensus 498 ~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~ 577 (934)
. ....+.+|.+|+.+..+.+.+++|+ ..+.+..++.++....++..+..... ..
T Consensus 150 E---------------------PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi---~i- 203 (618)
T PRK14951 150 E---------------------PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENV---PA- 203 (618)
T ss_pred c---------------------CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCC---CC-
Confidence 1 1456777878888889999999988 48999999999988888877654322 11
Q ss_pred chHHHHHHHhhcCCCChHHHHHHHHH
Q 002337 578 SEEFVKDIIGQTSGFMPRDLHALVAD 603 (934)
Q Consensus 578 ~~~~L~~la~~t~Gfv~~DL~~L~~~ 603 (934)
....+..++..+.| ..+|+..++..
T Consensus 204 e~~AL~~La~~s~G-slR~al~lLdq 228 (618)
T PRK14951 204 EPQALRLLARAARG-SMRDALSLTDQ 228 (618)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 23446667776655 55565555543
No 195
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.94 E-value=1.9e-09 Score=109.63 Aligned_cols=114 Identities=25% Similarity=0.348 Sum_probs=74.9
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCC----cEEEecCccccccccchhhhhhHHHHHHH----HhCCCcEEEeccccc
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSL----NFLSVKGPELINMYIGESEKNVRDIFQKA----RSARPCVIFFDELDS 754 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~----~~i~v~~~~l~~~~~Gese~~v~~lf~~A----~~~~p~vlfiDEid~ 754 (934)
|...++|.||+|||||.+|+++|..+.. +++.++++++.. -++.+..+..++..+ ......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4567899999999999999999999996 999999988865 111122222222221 111113999999999
Q ss_pred cccCCCCCCCCchhHHHHHHhhhhhccCCc--------CCCCCEEEEEEcCCCC
Q 002337 755 LAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DSSQDLFIIGASNRPD 800 (934)
Q Consensus 755 l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~--------~~~~~v~vI~aTNrp~ 800 (934)
+.++.+. ...-....+.+.||..||+-. -..+++++|+|+|--.
T Consensus 80 a~~~~~~--~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNSG--GADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTTT--CSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccc--cchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9986222 222223457788887776431 1235799999999764
No 196
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.94 E-value=2.3e-08 Score=105.34 Aligned_cols=144 Identities=25% Similarity=0.436 Sum_probs=102.2
Q ss_pred hhcCCCCCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccchhhhhhHHHHHHHHhC-CCcEEEeccc
Q 002337 677 FSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSA-RPCVIFFDEL 752 (934)
Q Consensus 677 ~~~~~~~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~-~p~vlfiDEi 752 (934)
|-.|. +..++||+|+.|||||+++|++..++ +..+|.|...+| ..+-++++..+.. .+-|||+|++
T Consensus 46 Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L---------~~l~~l~~~l~~~~~kFIlf~DDL 115 (249)
T PF05673_consen 46 FLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL---------GDLPELLDLLRDRPYKFILFCDDL 115 (249)
T ss_pred HHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh---------ccHHHHHHHHhcCCCCEEEEecCC
Confidence 33443 57899999999999999999998876 678999987666 4455666666533 4569999986
Q ss_pred cccccCCCCCCCCchhHHHHHHhhhhhccC-CcCCCCCEEEEEEcCCCCCCChhhh---------------------CCC
Q 002337 753 DSLAPARGASGDSGGVMDRVVSQMLAEIDG-LNDSSQDLFIIGASNRPDLIDPALL---------------------RPG 810 (934)
Q Consensus 753 d~l~~~r~~~~~~~~~~~~v~~~lL~~ldg-~~~~~~~v~vI~aTNrp~~lD~all---------------------rpG 810 (934)
. + +.++. --..|-..||| +.....+|+|.+|+||-..+.+.+. =..
T Consensus 116 s--F-------e~~d~---~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsD 183 (249)
T PF05673_consen 116 S--F-------EEGDT---EYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSD 183 (249)
T ss_pred C--C-------CCCcH---HHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHH
Confidence 3 1 11111 12334444554 4455689999999999765543211 123
Q ss_pred CcceeeeecCCCCHHHHHHHHHHHHhcCCCCcC
Q 002337 811 RFDKLLYVGVNSDVSYRERVLKALTRKFKLLED 843 (934)
Q Consensus 811 Rfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~ 843 (934)
||--.|.|. ||+.+...+|.+.+.++..+.-+
T Consensus 184 RFGL~l~F~-~~~q~~YL~IV~~~~~~~g~~~~ 215 (249)
T PF05673_consen 184 RFGLWLSFY-PPDQEEYLAIVRHYAERYGLELD 215 (249)
T ss_pred hCCcEEEec-CCCHHHHHHHHHHHHHHcCCCCC
Confidence 899999999 59999999999999988776544
No 197
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.94 E-value=9.2e-09 Score=120.90 Aligned_cols=168 Identities=21% Similarity=0.265 Sum_probs=111.7
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEe------------cC--------ccccccc--cchhhhhhHHHHHHHHh
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSV------------KG--------PELINMY--IGESEKNVRDIFQKARS 741 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v------------~~--------~~l~~~~--~Gese~~v~~lf~~A~~ 741 (934)
+..+||+||+|||||++|+++|+.++..--.. +| +++...- ...+...++++++.+..
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~ 122 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEY 122 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999999875421000 00 1111100 01123457788877753
Q ss_pred C----CCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeee
Q 002337 742 A----RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLY 817 (934)
Q Consensus 742 ~----~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~ 817 (934)
. ...|++|||+|.+. ....+.|+..|+.. ...+++|.+|+.++.+.+.+++ |+ ..+.
T Consensus 123 ~P~~~~~KVvIIDEa~~Ls-------------~~a~naLLk~LEep---p~~~vfI~aTte~~kI~~tI~S--Rc-~~~e 183 (507)
T PRK06645 123 KPLQGKHKIFIIDEVHMLS-------------KGAFNALLKTLEEP---PPHIIFIFATTEVQKIPATIIS--RC-QRYD 183 (507)
T ss_pred ccccCCcEEEEEEChhhcC-------------HHHHHHHHHHHhhc---CCCEEEEEEeCChHHhhHHHHh--cc-eEEE
Confidence 3 34699999999884 13456677766643 3456667777888899999988 77 5677
Q ss_pred ecCCCCHHHHHHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHHHHHHH
Q 002337 818 VGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADAWFHA 873 (934)
Q Consensus 818 v~~Pp~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~A~~~A 873 (934)
+. |++.++...+++..+++.+..-+ ..+..+++.+ +.+.+++.+++..+...+
T Consensus 184 f~-~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s--~GslR~al~~Ldkai~~~ 237 (507)
T PRK06645 184 LR-RLSFEEIFKLLEYITKQENLKTDIEALRIIAYKS--EGSARDAVSILDQAASMS 237 (507)
T ss_pred cc-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhh
Confidence 87 47788888888888876654322 2366778773 447778777777665443
No 198
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.94 E-value=3.3e-09 Score=101.80 Aligned_cols=122 Identities=31% Similarity=0.478 Sum_probs=83.4
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCc---EEEecCcccccc--------------ccchhhhhhHHHHHHHHhCCCcE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLN---FLSVKGPELINM--------------YIGESEKNVRDIFQKARSARPCV 746 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~---~i~v~~~~l~~~--------------~~Gese~~v~~lf~~A~~~~p~v 746 (934)
+..++|+||||||||++++.+|..+... ++.+++...... .........+.++..++...|.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4678999999999999999999998775 888887654332 22344556788999999888899
Q ss_pred EEeccccccccCCCCCCCCchhHHHHHHh-----hhhhccCCcCCCCCEEEEEEcCC-CCCCChhhhCCCCcceeeeecC
Q 002337 747 IFFDELDSLAPARGASGDSGGVMDRVVSQ-----MLAEIDGLNDSSQDLFIIGASNR-PDLIDPALLRPGRFDKLLYVGV 820 (934)
Q Consensus 747 lfiDEid~l~~~r~~~~~~~~~~~~v~~~-----lL~~ldg~~~~~~~v~vI~aTNr-p~~lD~allrpGRfd~~i~v~~ 820 (934)
||+||++.+..... ...... ..... .......+|+++|. ....+..+.+ |++..+.+..
T Consensus 82 iiiDei~~~~~~~~---------~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~ 146 (148)
T smart00382 82 LILDEITSLLDAEQ---------EALLLLLEELRLLLLL----KSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLL 146 (148)
T ss_pred EEEECCcccCCHHH---------HHHHHhhhhhHHHHHH----HhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecC
Confidence 99999999874321 011100 01111 12345778888886 3333444444 9999988864
No 199
>PRK06620 hypothetical protein; Validated
Probab=98.93 E-value=9.2e-09 Score=108.53 Aligned_cols=142 Identities=11% Similarity=0.205 Sum_probs=88.2
Q ss_pred CcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCC
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGD 764 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~ 764 (934)
..++||||||||||++++++++..+..++. .... ..+.+ ....+|+|||||.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH-----hcCCEEEEeccccch--------
Confidence 579999999999999999999887654332 1000 01111 123699999999441
Q ss_pred CchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCC--CChhhhCCCCccee--eeecCCCCHHHHHHHHHHHHhcCC-
Q 002337 765 SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL--IDPALLRPGRFDKL--LYVGVNSDVSYRERVLKALTRKFK- 839 (934)
Q Consensus 765 ~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~--lD~allrpGRfd~~--i~v~~Pp~~~~r~~Il~~~~~~~~- 839 (934)
+ ..+-.+.+.+. +. +..++|+++..|.. + |+|++ |+... +.+. ||+.+.+..+++...+...
T Consensus 99 -~----~~lf~l~N~~~---e~-g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~-~pd~~~~~~~l~k~~~~~~l 165 (214)
T PRK06620 99 -E----PALLHIFNIIN---EK-QKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLN-SPDDELIKILIFKHFSISSV 165 (214)
T ss_pred -H----HHHHHHHHHHH---hc-CCEEEEEcCCCccccch-HHHHH--HHhCCceEeeC-CCCHHHHHHHHHHHHHHcCC
Confidence 1 12223322221 22 34677777766664 5 88888 99765 4455 6888889999987776443
Q ss_pred -CCcCCCHHHHHhhCCCCCCHHHHHHHHHH
Q 002337 840 -LLEDVSLYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 840 -~~~~~~l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
+.++ -++.|+.++ .-+.+.+.+++..
T Consensus 166 ~l~~e-v~~~L~~~~--~~d~r~l~~~l~~ 192 (214)
T PRK06620 166 TISRQ-IIDFLLVNL--PREYSKIIEILEN 192 (214)
T ss_pred CCCHH-HHHHHHHHc--cCCHHHHHHHHHH
Confidence 3333 267777774 3355555555554
No 200
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.93 E-value=1e-08 Score=116.49 Aligned_cols=159 Identities=20% Similarity=0.282 Sum_probs=105.1
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC------------------------cEEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL------------------------NFLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~------------------------~~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+..+|||||||+|||++|+++|+.+.. +++.+++.+ ......++++++.+
T Consensus 36 ~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~ 109 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNV 109 (355)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHH
Confidence 456899999999999999999987632 233333321 11233577788776
Q ss_pred HhC----CCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 RSA----RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~~~----~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
... ...|++|||+|.+. ....+.|+..++.. ..++++|.+||.++.+.+++++ |+. .
T Consensus 110 ~~~p~~~~~~vviidea~~l~-------------~~~~~~Ll~~le~~---~~~~~lIl~~~~~~~l~~~l~s--r~~-~ 170 (355)
T TIGR02397 110 KYAPSSGKYKVYIIDEVHMLS-------------KSAFNALLKTLEEP---PEHVVFILATTEPHKIPATILS--RCQ-R 170 (355)
T ss_pred hcCcccCCceEEEEeChhhcC-------------HHHHHHHHHHHhCC---ccceeEEEEeCCHHHHHHHHHh--hee-E
Confidence 532 23599999999884 23456777777654 2456677778888888899988 874 6
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHHHH
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADAW 870 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~A~ 870 (934)
+.++ |++.++..++++...++.++.-+ ..+..++..+ |.+.+.+.+.+..+.
T Consensus 171 ~~~~-~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~--~g~~~~a~~~lekl~ 223 (355)
T TIGR02397 171 FDFK-RIPLEDIVERLKKILDKEGIKIEDEALELIARAA--DGSLRDALSLLDQLI 223 (355)
T ss_pred EEcC-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCChHHHHHHHHHHH
Confidence 7787 57888888888888876654222 2345566663 334455555554433
No 201
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.92 E-value=2.1e-08 Score=113.11 Aligned_cols=160 Identities=19% Similarity=0.309 Sum_probs=99.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhC-----CcEEEEecCccccccc-------------cc-------hHHHHHHHHHHhh
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLG-----IHVVEYSCHNLMASSE-------------RK-------TSAALAQAFNTAQ 453 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg-----~~~~~I~~~~L~~~~~-------------g~-------~e~~L~~~f~~A~ 453 (934)
+++|+||||||||++++++++++. .+++.+++.++..... +. ....++.+.....
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 599999999999999999999984 3467888876532110 00 1223333333332
Q ss_pred cC-----CCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEE
Q 002337 454 SY-----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVA 528 (934)
Q Consensus 454 ~~-----~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIa 528 (934)
.. .+.+++|||+|.+.. .....|.++++.. .....+|.
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~----------------~~~~~L~~~le~~---------------------~~~~~~Il 160 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALRE----------------DAQQALRRIMEQY---------------------SRTCRFII 160 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCH----------------HHHHHHHHHHHhc---------------------cCCCeEEE
Confidence 22 246999999997743 1122333333210 22234555
Q ss_pred ecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHH
Q 002337 529 AADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 529 tTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A 604 (934)
+++.+..+.+.+++|+. .+.+.+|+.++...+++..++.... .. ....++.++..+ ++|++.+....
T Consensus 161 ~~~~~~~~~~~L~sr~~-~v~~~~~~~~~~~~~l~~~~~~~~~---~~-~~~al~~l~~~~----~gdlr~l~~~l 227 (337)
T PRK12402 161 ATRQPSKLIPPIRSRCL-PLFFRAPTDDELVDVLESIAEAEGV---DY-DDDGLELIAYYA----GGDLRKAILTL 227 (337)
T ss_pred EeCChhhCchhhcCCce-EEEecCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHc----CCCHHHHHHHH
Confidence 66666777788888874 7899999999999999887754332 22 244567777665 34555555433
No 202
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.92 E-value=1.3e-08 Score=124.27 Aligned_cols=158 Identities=19% Similarity=0.257 Sum_probs=101.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhh-----cCCCEEEEEcchhhccccc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQ-----SYSPTILLLRDFDVFRNLV 472 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~-----~~~P~IL~IDEID~L~~~~ 472 (934)
.+++|+|||||||||+++++|+..+.+++.+++... ....++..+..+. .....++||||+|.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-- 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-- 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH--
Confidence 368999999999999999999999999988887531 1122333333331 12467999999998754
Q ss_pred cCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCC--CCCChhhhcccceEEEc
Q 002337 473 SNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS--EGLPPTIRRCFSHEISM 550 (934)
Q Consensus 473 ~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~--~~Ld~aLrrrF~~eI~i 550 (934)
.....|...++ .+.+++|++|+.. ..+++++++|+ ..+.+
T Consensus 124 --------------~qQdaLL~~lE-----------------------~g~IiLI~aTTenp~~~l~~aL~SR~-~v~~l 165 (725)
T PRK13341 124 --------------AQQDALLPWVE-----------------------NGTITLIGATTENPYFEVNKALVSRS-RLFRL 165 (725)
T ss_pred --------------HHHHHHHHHhc-----------------------CceEEEEEecCCChHhhhhhHhhccc-cceec
Confidence 11222223322 3557778776432 45889999886 47999
Q ss_pred CCCCHHHHHHHHHHhcccccc----ccCCCCchHHHHHHHhhcCCCChHHHHHHHHHH
Q 002337 551 GPLTEQQRVEMLSQLLQPVSE----LTSDTGSEEFVKDIIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 551 ~~Pde~~R~~IL~~ll~~~~~----l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A 604 (934)
++++.+++..+++..+..... ....+ .+..++.++....| ..+.+..+++.+
T Consensus 166 ~pLs~edi~~IL~~~l~~~~~~~g~~~v~I-~deaL~~La~~s~G-D~R~lln~Le~a 221 (725)
T PRK13341 166 KSLSDEDLHQLLKRALQDKERGYGDRKVDL-EPEAEKHLVDVANG-DARSLLNALELA 221 (725)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCcccCC-CHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 999999999999988752110 00112 24456777766543 234444444443
No 203
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.92 E-value=1.9e-08 Score=117.06 Aligned_cols=156 Identities=15% Similarity=0.224 Sum_probs=99.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccC
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSN 474 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~ 474 (934)
.+++||||+|+|||+|++++++++ +..++.+++.++...........-.+.|.... ....+++|||++.+..+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh--
Confidence 469999999999999999999987 67788888765443221111000011233222 246799999999876411
Q ss_pred CCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC---CCChhhhcccc--eEEE
Q 002337 475 ESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE---GLPPTIRRCFS--HEIS 549 (934)
Q Consensus 475 ~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~---~Ld~aLrrrF~--~eI~ 549 (934)
....++..+++.+.. .+..++++++..|. .+++++++||. ..+.
T Consensus 219 --------~~qeelf~l~N~l~~-----------------------~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~ 267 (445)
T PRK12422 219 --------ATQEEFFHTFNSLHT-----------------------EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIP 267 (445)
T ss_pred --------hhHHHHHHHHHHHHH-----------------------CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEe
Confidence 123455555554422 23345555555553 46789999995 5889
Q ss_pred cCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC
Q 002337 550 MGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (934)
Q Consensus 550 i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G 591 (934)
+.+|+.+.|.+|++..++.... .. .++.++.++....+
T Consensus 268 l~~pd~e~r~~iL~~k~~~~~~---~l-~~evl~~la~~~~~ 305 (445)
T PRK12422 268 LHPLTKEGLRSFLERKAEALSI---RI-EETALDFLIEALSS 305 (445)
T ss_pred cCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHhcCC
Confidence 9999999999999988765422 22 24456667776554
No 204
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.92 E-value=1.7e-08 Score=120.86 Aligned_cols=159 Identities=23% Similarity=0.266 Sum_probs=106.8
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC------------------------cEEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL------------------------NFLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~------------------------~~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+..+||+||+|||||++|+.+|..++. +++.+++.. +..-..+|++.+.+
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v 111 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKV 111 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHH
Confidence 456899999999999999999987642 344443321 12334577887776
Q ss_pred Hh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 RS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
.. ....|++|||+|.+. ....+.||..|+.. ...+++|.+|+.++.|.+.+++ |+. .
T Consensus 112 ~~~p~~~~~kViIIDE~~~Lt-------------~~a~naLLKtLEep---p~~~ifIlatt~~~ki~~tI~S--Rc~-~ 172 (559)
T PRK05563 112 KYAPSEAKYKVYIIDEVHMLS-------------TGAFNALLKTLEEP---PAHVIFILATTEPHKIPATILS--RCQ-R 172 (559)
T ss_pred hhCcccCCeEEEEEECcccCC-------------HHHHHHHHHHhcCC---CCCeEEEEEeCChhhCcHHHHh--Hhe-E
Confidence 53 334699999999884 23466777777754 2355666667778999999988 875 5
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHHHH
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADAW 870 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~A~ 870 (934)
+.|.. ++.++-..+++..+++.++.-+ ..+..++..+ +-+.+|..+++..+.
T Consensus 173 ~~f~~-~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s--~G~~R~al~~Ldq~~ 225 (559)
T PRK05563 173 FDFKR-ISVEDIVERLKYILDKEGIEYEDEALRLIARAA--EGGMRDALSILDQAI 225 (559)
T ss_pred EecCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 66774 6777777888877776654322 2355667763 336666666665543
No 205
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.92 E-value=1.5e-08 Score=114.84 Aligned_cols=173 Identities=16% Similarity=0.210 Sum_probs=115.1
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc-----CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEecccccccc
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAP 757 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~ 757 (934)
....++||||.|.|||+|++|++++. ++.++++...++...++-....+-.+-|++-. .-.+++||+++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 35679999999999999999998876 45688888888877776654444445566554 456999999999986
Q ss_pred CCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC---CCChhhhCCCCcceeeeecC-CCCHHHHHHHHHH
Q 002337 758 ARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD---LIDPALLRPGRFDKLLYVGV-NSDVSYRERVLKA 833 (934)
Q Consensus 758 ~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~---~lD~allrpGRfd~~i~v~~-Pp~~~~r~~Il~~ 833 (934)
+... ....-.+.|.+. ..+ +-+|+.+-..|. .++|.|.+ ||...+.+.+ |||.+.|..||+.
T Consensus 190 k~~~----qeefFh~FN~l~-------~~~-kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 190 KERT----QEEFFHTFNALL-------ENG-KQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred ChhH----HHHHHHHHHHHH-------hcC-CEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHH
Confidence 5321 111223334432 222 345555555555 45689998 9998877766 8999999999988
Q ss_pred HHhcCCCCcCCC-HHHHHhhCCCCCCHHHHHHHHHHHHHHH
Q 002337 834 LTRKFKLLEDVS-LYSIAKKCPPNFTGADMYALCADAWFHA 873 (934)
Q Consensus 834 ~~~~~~~~~~~~-l~~la~~~t~g~sgaDl~~l~~~A~~~A 873 (934)
.....++.-.-+ +..+|.+. .=+.++|..++......|
T Consensus 256 ka~~~~~~i~~ev~~~la~~~--~~nvReLegaL~~l~~~a 294 (408)
T COG0593 256 KAEDRGIEIPDEVLEFLAKRL--DRNVRELEGALNRLDAFA 294 (408)
T ss_pred HHHhcCCCCCHHHHHHHHHHh--hccHHHHHHHHHHHHHHH
Confidence 766554432222 56677764 234566666655544444
No 206
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.91 E-value=6.4e-09 Score=118.78 Aligned_cols=121 Identities=25% Similarity=0.497 Sum_probs=77.1
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCc-------EEEecC----ccccccc----cchh--hhhhHHHHHHHHhC--C
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLN-------FLSVKG----PELINMY----IGES--EKNVRDIFQKARSA--R 743 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~-------~i~v~~----~~l~~~~----~Ges--e~~v~~lf~~A~~~--~ 743 (934)
.+.+++|+||||||||++|+.+|..+... ++.+.. .+++..+ +|-. ...+.++.++|+.. .
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 36799999999999999999999887431 222221 2333222 1111 11234555667653 5
Q ss_pred CcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhcc--------------------CCcCCCCCEEEEEEcCCCC---
Q 002337 744 PCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEID--------------------GLNDSSQDLFIIGASNRPD--- 800 (934)
Q Consensus 744 p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ld--------------------g~~~~~~~v~vI~aTNrp~--- 800 (934)
|++|||||++.....+ +...++..|+ .+. ...++.||||+|..|
T Consensus 273 ~~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~-iP~Nl~IIgTMNt~Drs~ 339 (459)
T PRK11331 273 KYVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFY-VPENVYIIGLMNTADRSL 339 (459)
T ss_pred CcEEEEehhhccCHHH------------hhhhhhhhccccccccccceeeecccccccccc-CCCCeEEEEecCccccch
Confidence 8999999998764332 2222222222 121 246899999999998
Q ss_pred -CCChhhhCCCCcceeeeec
Q 002337 801 -LIDPALLRPGRFDKLLYVG 819 (934)
Q Consensus 801 -~lD~allrpGRfd~~i~v~ 819 (934)
.+|.||+| ||. .|.+.
T Consensus 340 ~~lD~AlrR--RF~-fi~i~ 356 (459)
T PRK11331 340 AVVDYALRR--RFS-FIDIE 356 (459)
T ss_pred hhccHHHHh--hhh-eEEec
Confidence 89999999 995 35555
No 207
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=5.3e-08 Score=110.47 Aligned_cols=200 Identities=21% Similarity=0.350 Sum_probs=125.0
Q ss_pred CCchHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----cEEEEecCccccccc------
Q 002337 370 PLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGI-----HVVEYSCHNLMASSE------ 438 (934)
Q Consensus 370 ~~~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~-----~~~~I~~~~L~~~~~------ 438 (934)
+..++..+++..++.|.+.. ..+.++++||+||||||++++.+++++.- .++.|||...-+.+.
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~-----~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 20 PHREEEINQLASFLAPALRG-----ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred cccHHHHHHHHHHHHHHhcC-----CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 44456677888888777765 23446999999999999999999999843 389999986433211
Q ss_pred ---------cc-hHHHHHHHHHHhh-cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCcccccccc
Q 002337 439 ---------RK-TSAALAQAFNTAQ-SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEES 507 (934)
Q Consensus 439 ---------g~-~e~~L~~~f~~A~-~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~ 507 (934)
|. ....+..+++... .....|++|||+|.|.... + ++.-.|.++..
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~----------~---~~LY~L~r~~~---------- 151 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD----------G---EVLYSLLRAPG---------- 151 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc----------c---hHHHHHHhhcc----------
Confidence 11 1222233333222 2467899999999997621 0 22222222211
Q ss_pred CCCCchhhhhhhhcccEEEEEecCCCC---CCChhhhcccc-eEEEcCCCCHHHHHHHHHHhccccccccCCCCch---H
Q 002337 508 HGYFPVKEIEKICRQQVLLVAAADSSE---GLPPTIRRCFS-HEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSE---E 580 (934)
Q Consensus 508 ~g~~~~~~~~~~~~~~ViVIatTn~~~---~Ld~aLrrrF~-~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~---~ 580 (934)
....+|.+|+.+|..+ .+++.+.+++. .+|.|++.+.+|...|++...... +..+.-.+ .
T Consensus 152 -----------~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~--~~~~~~~~~vl~ 218 (366)
T COG1474 152 -----------ENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG--FSAGVIDDDVLK 218 (366)
T ss_pred -----------ccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCcCccHHH
Confidence 0156789999998874 58899988753 479999999999999999876431 22222222 2
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHh
Q 002337 581 FVKDIIGQTSGFMPRDLHALVADAGANLIRK 611 (934)
Q Consensus 581 ~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r 611 (934)
....++...+| ..+-...+++.|+..|.++
T Consensus 219 lia~~~a~~~G-DAR~aidilr~A~eiAe~~ 248 (366)
T COG1474 219 LIAALVAAESG-DARKAIDILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHcCc-cHHHHHHHHHHHHHHHHhh
Confidence 33444444555 2232334667777666543
No 208
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.90 E-value=2.4e-08 Score=119.90 Aligned_cols=158 Identities=17% Similarity=0.269 Sum_probs=102.8
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCc------------------------EEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLN------------------------FLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~------------------------~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+..+||+||+|+|||++|+++|+.++.. ++.+++.. .. .-..+|++.+.+
T Consensus 38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas----~~--~VddiR~li~~~ 111 (647)
T PRK07994 38 HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAAS----RT--KVEDTRELLDNV 111 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc----cC--CHHHHHHHHHHH
Confidence 3457999999999999999999987552 23333221 01 123456665554
Q ss_pred H----hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 R----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~----~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
. .+...|+||||+|.|. ....+.||+.|+.- ...+.+|.+|+.++.|.+.+++ |+ ..
T Consensus 112 ~~~p~~g~~KV~IIDEah~Ls-------------~~a~NALLKtLEEP---p~~v~FIL~Tt~~~kLl~TI~S--RC-~~ 172 (647)
T PRK07994 112 QYAPARGRFKVYLIDEVHMLS-------------RHSFNALLKTLEEP---PEHVKFLLATTDPQKLPVTILS--RC-LQ 172 (647)
T ss_pred HhhhhcCCCEEEEEechHhCC-------------HHHHHHHHHHHHcC---CCCeEEEEecCCccccchHHHh--hh-eE
Confidence 3 2345699999999984 23567787777754 3466777778888899999998 86 67
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHHH
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADA 869 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~A 869 (934)
++|.. ++.++-...|+..+++..+..+ ..+..++..+ +-+.++..+++..|
T Consensus 173 ~~f~~-Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s--~Gs~R~Al~lldqa 224 (647)
T PRK07994 173 FHLKA-LDVEQIRQQLEHILQAEQIPFEPRALQLLARAA--DGSMRDALSLTDQA 224 (647)
T ss_pred eeCCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 77774 6667677677666654443222 2355566662 44556666666443
No 209
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.90 E-value=5.8e-08 Score=116.33 Aligned_cols=176 Identities=16% Similarity=0.251 Sum_probs=115.4
Q ss_pred chHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCC------------------------cEEE
Q 002337 372 QGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGI------------------------HVVE 427 (934)
Q Consensus 372 ~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~------------------------~~~~ 427 (934)
++.+++.|...+.- .+.+..+||+||+|||||++|+.+|+.++. ++++
T Consensus 21 q~~v~~~L~~~i~~--------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~e 92 (559)
T PRK05563 21 QEHITKTLKNAIKQ--------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIE 92 (559)
T ss_pred cHHHHHHHHHHHHc--------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEE
Confidence 34566666666542 133456899999999999999999999852 2333
Q ss_pred EecCccccccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCcccc
Q 002337 428 YSCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDE 503 (934)
Q Consensus 428 I~~~~L~~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~ 503 (934)
++.. .......++++.+.+.. ....|++|||+|.|.. .....+++ .++.
T Consensus 93 idaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---------------~a~naLLK-tLEe----- 145 (559)
T PRK05563 93 IDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST---------------GAFNALLK-TLEE----- 145 (559)
T ss_pred eecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHHHHH-HhcC-----
Confidence 3332 12344556666666542 2346999999998753 12233333 2221
Q ss_pred ccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHH
Q 002337 504 DEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVK 583 (934)
Q Consensus 504 ~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~ 583 (934)
....+++|.+|+.+..+++.+++|+. .+.+..|+.++....++..++.... ..+ ...+.
T Consensus 146 ----------------pp~~~ifIlatt~~~ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i~~~egi---~i~-~~al~ 204 (559)
T PRK05563 146 ----------------PPAHVIFILATTEPHKIPATILSRCQ-RFDFKRISVEDIVERLKYILDKEGI---EYE-DEALR 204 (559)
T ss_pred ----------------CCCCeEEEEEeCChhhCcHHHHhHhe-EEecCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHH
Confidence 14567777778889999999999985 7899999999999998887764332 122 34466
Q ss_pred HHHhhcCCCChHHHHHHHHHH
Q 002337 584 DIIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 584 ~la~~t~Gfv~~DL~~L~~~A 604 (934)
.++..+.| ..+|...++..+
T Consensus 205 ~ia~~s~G-~~R~al~~Ldq~ 224 (559)
T PRK05563 205 LIARAAEG-GMRDALSILDQA 224 (559)
T ss_pred HHHHHcCC-CHHHHHHHHHHH
Confidence 67776665 566666666544
No 210
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=1.5e-08 Score=119.88 Aligned_cols=181 Identities=17% Similarity=0.217 Sum_probs=114.4
Q ss_pred hhcCCHHHHHHHHHhhhcccccccCCCCCccchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHcCCc---------
Q 002337 641 TQVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN--------- 711 (934)
Q Consensus 641 ~~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~--------- 711 (934)
...++++.+...|...-.. -+.+..+||+||+|||||++|+++|+.++..
T Consensus 16 ~divGq~~v~~~L~~~~~~---------------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 74 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQ---------------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCN 74 (509)
T ss_pred HHhcCCHHHHHHHHHHHHh---------------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCC
Confidence 3466777777777654321 1124568999999999999999999987542
Q ss_pred ---------------EEEecCccccccccchhhhhhHHHHHHHHh----CCCcEEEeccccccccCCCCCCCCchhHHHH
Q 002337 712 ---------------FLSVKGPELINMYIGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRV 772 (934)
Q Consensus 712 ---------------~i~v~~~~l~~~~~Gese~~v~~lf~~A~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v 772 (934)
++.+++.. ...-..+|++.+.+.. ....|++|||+|.+.. ..
T Consensus 75 ~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-------------~a 135 (509)
T PRK14958 75 DCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-------------HS 135 (509)
T ss_pred CCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-------------HH
Confidence 44444321 1122346666665432 3346999999999952 24
Q ss_pred HHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCC-cCCCHHHHHh
Q 002337 773 VSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAK 851 (934)
Q Consensus 773 ~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~-~~~~l~~la~ 851 (934)
.+.||..|+... ..+.+|.+|+.+..+.+.+++ |+ ..+.|.. ...++-...++..+++.++. .+..+..+++
T Consensus 136 ~naLLk~LEepp---~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~-l~~~~i~~~l~~il~~egi~~~~~al~~ia~ 208 (509)
T PRK14958 136 FNALLKTLEEPP---SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQ-LPPLQIAAHCQHLLKEENVEFENAALDLLAR 208 (509)
T ss_pred HHHHHHHHhccC---CCeEEEEEECChHhchHHHHH--Hh-hhhhcCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 567777777653 346666677778888888888 77 4556663 45565566666666654432 2223566777
Q ss_pred hCCCCCCHHHHHHHHHHHH
Q 002337 852 KCPPNFTGADMYALCADAW 870 (934)
Q Consensus 852 ~~t~g~sgaDl~~l~~~A~ 870 (934)
.+ +-+.+|+.+++..+.
T Consensus 209 ~s--~GslR~al~lLdq~i 225 (509)
T PRK14958 209 AA--NGSVRDALSLLDQSI 225 (509)
T ss_pred Hc--CCcHHHHHHHHHHHH
Confidence 63 446677777776543
No 211
>PHA02244 ATPase-like protein
Probab=98.89 E-value=9.1e-09 Score=114.68 Aligned_cols=131 Identities=24% Similarity=0.360 Sum_probs=82.2
Q ss_pred CCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCc----cccccccchhhhhhHHHHHHHHhCCCcEEEeccccccc
Q 002337 681 LRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP----ELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLA 756 (934)
Q Consensus 681 ~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~----~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~ 756 (934)
+..+.+++|+||||||||++|+++|..++.+|+.+++- ++.+ +++....-...-|-+|. ....+|+|||++.+.
T Consensus 116 l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~ 193 (383)
T PHA02244 116 VNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAF-KKGGLFFIDEIDASI 193 (383)
T ss_pred HhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHh-hcCCEEEEeCcCcCC
Confidence 34467899999999999999999999999999998842 1111 11111111111222332 345799999999875
Q ss_pred cCCCCCCCCchhHHHHH-HhhhhhccCCcCCCCCEEEEEEcCCC-----------CCCChhhhCCCCcceeeeecCCC
Q 002337 757 PARGASGDSGGVMDRVV-SQMLAEIDGLNDSSQDLFIIGASNRP-----------DLIDPALLRPGRFDKLLYVGVNS 822 (934)
Q Consensus 757 ~~r~~~~~~~~~~~~v~-~~lL~~ldg~~~~~~~v~vI~aTNrp-----------~~lD~allrpGRfd~~i~v~~Pp 822 (934)
+. ......+++ ..++...++......++.+|+|+|.+ ..+++|++. ||- .|+++.|.
T Consensus 194 p~------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~ 262 (383)
T PHA02244 194 PE------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDE 262 (383)
T ss_pred HH------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCc
Confidence 32 111112222 11222333332234678999999974 478999999 995 68998843
No 212
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.89 E-value=3.3e-09 Score=119.48 Aligned_cols=137 Identities=26% Similarity=0.404 Sum_probs=91.6
Q ss_pred CCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccc------ccccchhhh---h-----hHHHHHHHHhCCCcE
Q 002337 681 LRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI------NMYIGESEK---N-----VRDIFQKARSARPCV 746 (934)
Q Consensus 681 ~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~------~~~~Gese~---~-----v~~lf~~A~~~~p~v 746 (934)
+..+.++||.||||||||++|+.+|..++.+|+.+.+..-+ +.|.-.... . -.-+|...+ +|
T Consensus 40 ~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~i 115 (329)
T COG0714 40 LLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VI 115 (329)
T ss_pred HHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eE
Confidence 34578999999999999999999999999999999985332 222221110 0 011122111 49
Q ss_pred EEeccccccccCCCCCCCCchhHHHHHHhhhhhccCC----cC-----CCCCEEEEEEcC-----CCCCCChhhhCCCCc
Q 002337 747 IFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL----ND-----SSQDLFIIGASN-----RPDLIDPALLRPGRF 812 (934)
Q Consensus 747 lfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~----~~-----~~~~v~vI~aTN-----rp~~lD~allrpGRf 812 (934)
+|+|||+...+ .+.+.||..|+.. .. -...++||+|+| .-..+.+|+++ ||
T Consensus 116 ll~DEInra~p-------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf 180 (329)
T COG0714 116 LLLDEINRAPP-------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RF 180 (329)
T ss_pred EEEeccccCCH-------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hE
Confidence 99999987753 3555555555531 11 125688888889 34478899999 99
Q ss_pred ceeeeecCCCCHHHHHHHHHHHHh
Q 002337 813 DKLLYVGVNSDVSYRERVLKALTR 836 (934)
Q Consensus 813 d~~i~v~~Pp~~~~r~~Il~~~~~ 836 (934)
...++++.|+..++...++.....
T Consensus 181 ~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 181 LLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred EEEEecCCCCchHHHHHHHHhCcc
Confidence 999999986566555555544443
No 213
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.89 E-value=5.5e-08 Score=116.78 Aligned_cols=173 Identities=19% Similarity=0.255 Sum_probs=109.1
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEE
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEY 428 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~------------------------~~~I 428 (934)
+.+++.|...+.- -+.+..+||+||+|+||||+++++|+.++.. ++++
T Consensus 22 e~vv~~L~~~l~~--------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~iei 93 (647)
T PRK07994 22 EHVLTALANALDL--------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEI 93 (647)
T ss_pred HHHHHHHHHHHHc--------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceee
Confidence 4455555555431 1234457999999999999999999998652 2222
Q ss_pred ecCccccccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccc
Q 002337 429 SCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (934)
Q Consensus 429 ~~~~L~~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~ 504 (934)
+..+ ......++++.+.+.. ....|++|||+|.|.. .....+|+ .++.
T Consensus 94 daas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---------------~a~NALLK-tLEE------ 145 (647)
T PRK07994 94 DAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNALLK-TLEE------ 145 (647)
T ss_pred cccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---------------HHHHHHHH-HHHc------
Confidence 2211 1223345555554431 2346999999998864 12233333 2221
Q ss_pred cccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHH
Q 002337 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (934)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~ 584 (934)
....+.+|.+|+.+..|.+.+++|+ ..+.+..++.++-...|+..++.... .. .+..+..
T Consensus 146 ---------------Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i---~~-e~~aL~~ 205 (647)
T PRK07994 146 ---------------PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQI---PF-EPRALQL 205 (647)
T ss_pred ---------------CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHH
Confidence 1567788888889999999999997 59999999999999888877643321 11 2344566
Q ss_pred HHhhcCCCChHHHHHHHH
Q 002337 585 IIGQTSGFMPRDLHALVA 602 (934)
Q Consensus 585 la~~t~Gfv~~DL~~L~~ 602 (934)
++..+.|- .++...++.
T Consensus 206 Ia~~s~Gs-~R~Al~lld 222 (647)
T PRK07994 206 LARAADGS-MRDALSLTD 222 (647)
T ss_pred HHHHcCCC-HHHHHHHHH
Confidence 66665553 344444443
No 214
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=5.4e-08 Score=118.56 Aligned_cols=178 Identities=17% Similarity=0.235 Sum_probs=108.1
Q ss_pred HHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEE-------EE-ecCcccc----------
Q 002337 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVV-------EY-SCHNLMA---------- 435 (934)
Q Consensus 374 ~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~-------~I-~~~~L~~---------- 435 (934)
.+++.|...+.. -+.+..+||+||+||||||++|++|+.++..-. .. +|..+..
T Consensus 23 ~Iv~~LknaI~~--------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 23 HVLHALTNALTQ--------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHHHHHHHHHHh--------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 455555554431 133455799999999999999999999965311 00 0111100
Q ss_pred ccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCC
Q 002337 436 SSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYF 511 (934)
Q Consensus 436 ~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~ 511 (934)
.........+|++.+.+.. ....|++|||+|.|.. .....|.+.++.
T Consensus 95 Aas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~----------------eAqNALLKtLEE------------- 145 (944)
T PRK14949 95 AASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR----------------SSFNALLKTLEE------------- 145 (944)
T ss_pred cccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH----------------HHHHHHHHHHhc-------------
Confidence 0001223345555544431 2346999999998854 122233333321
Q ss_pred chhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC
Q 002337 512 PVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (934)
Q Consensus 512 ~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G 591 (934)
....+.+|.+|+.+..|.+.+++|+ ..+.+.+++.++..+.++..+..... . ..+..+..++..+.|
T Consensus 146 --------PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI---~-~edeAL~lIA~~S~G 212 (944)
T PRK14949 146 --------PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQL---P-FEAEALTLLAKAANG 212 (944)
T ss_pred --------cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCC---C-CCHHHHHHHHHHcCC
Confidence 1566778888989999999999988 48999999999999888887654221 1 123445666666555
Q ss_pred CChHHHHHHHH
Q 002337 592 FMPRDLHALVA 602 (934)
Q Consensus 592 fv~~DL~~L~~ 602 (934)
..++...++.
T Consensus 213 -d~R~ALnLLd 222 (944)
T PRK14949 213 -SMRDALSLTD 222 (944)
T ss_pred -CHHHHHHHHH
Confidence 3344444543
No 215
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.88 E-value=2.1e-08 Score=107.25 Aligned_cols=148 Identities=18% Similarity=0.274 Sum_probs=96.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCC-c-----EEEEecCccccccccchHHHHHHHHHHhh---------cCCC-EEEEE
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGI-H-----VVEYSCHNLMASSERKTSAALAQAFNTAQ---------SYSP-TILLL 462 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~-~-----~~~I~~~~L~~~~~g~~e~~L~~~f~~A~---------~~~P-~IL~I 462 (934)
+.|+|||||||||+.++++|+++.. + +.+.+.++-.+... ....+. -|.... .+.| -|++|
T Consensus 59 ~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisv--vr~Kik-~fakl~~~~~~~~~~~~~~fKiiIl 135 (346)
T KOG0989|consen 59 HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISV--VREKIK-NFAKLTVLLKRSDGYPCPPFKIIIL 135 (346)
T ss_pred eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccc--hhhhhc-CHHHHhhccccccCCCCCcceEEEE
Confidence 5899999999999999999999854 2 22233333222211 011111 122211 1223 69999
Q ss_pred cchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhc
Q 002337 463 RDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR 542 (934)
Q Consensus 463 DEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrr 542 (934)
||.|.+.. +....|.+.++.. ...+.+|..||....|++.+.+
T Consensus 136 DEcdsmts----------------daq~aLrr~mE~~---------------------s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 136 DECDSMTS----------------DAQAALRRTMEDF---------------------SRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred echhhhhH----------------HHHHHHHHHHhcc---------------------ccceEEEEEcCChhhCChHHHh
Confidence 99998764 4455666665431 5678899999999999999999
Q ss_pred ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC
Q 002337 543 CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (934)
Q Consensus 543 rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G 591 (934)
|+. .+.|+....+.....|+........ +.+ +..++.++..+.|
T Consensus 179 RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v---~~d-~~al~~I~~~S~G 222 (346)
T KOG0989|consen 179 RCQ-KFRFKKLKDEDIVDRLEKIASKEGV---DID-DDALKLIAKISDG 222 (346)
T ss_pred hHH-HhcCCCcchHHHHHHHHHHHHHhCC---CCC-HHHHHHHHHHcCC
Confidence 885 7778888887777777776654332 333 3456777777665
No 216
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.87 E-value=2.5e-08 Score=106.91 Aligned_cols=147 Identities=9% Similarity=0.129 Sum_probs=91.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhC---CcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccC
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLG---IHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSN 474 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg---~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~ 474 (934)
.+++|+||+|||||+|++++++++. ..+..++..+... ......+.... ..+++|||++.+....
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~-- 113 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE-- 113 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH--
Confidence 3699999999999999999998864 3344454432111 11122222221 2589999999875411
Q ss_pred CCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhccc-EEEEEecCCCCC---CChhhhcccc--eEE
Q 002337 475 ESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ-VLLVAAADSSEG---LPPTIRRCFS--HEI 548 (934)
Q Consensus 475 ~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~-ViVIatTn~~~~---Ld~aLrrrF~--~eI 548 (934)
....++..+++.+.+ .++ -+++++++.|.. +.+++++|+. ..+
T Consensus 114 --------~~~~~lf~l~n~~~e-----------------------~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~ 162 (235)
T PRK08084 114 --------LWEMAIFDLYNRILE-----------------------SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIY 162 (235)
T ss_pred --------HHHHHHHHHHHHHHH-----------------------cCCCeEEEeCCCChHHcCcccHHHHHHHhCCcee
Confidence 122345555554432 233 345555555544 5799999985 589
Q ss_pred EcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC
Q 002337 549 SMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (934)
Q Consensus 549 ~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G 591 (934)
.+.+|+.++|.++++........ .+ .++.++.++.+..|
T Consensus 163 ~l~~~~~~~~~~~l~~~a~~~~~---~l-~~~v~~~L~~~~~~ 201 (235)
T PRK08084 163 KLQPLSDEEKLQALQLRARLRGF---EL-PEDVGRFLLKRLDR 201 (235)
T ss_pred eecCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHhhcC
Confidence 99999999999999886544321 22 24456666666554
No 217
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=2.3e-08 Score=116.72 Aligned_cols=160 Identities=17% Similarity=0.205 Sum_probs=109.2
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcC------------------------CcEEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECS------------------------LNFLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~------------------------~~~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+..+||+||+|+|||++|+.+|..++ .+++.+++++- .+-..+|++.+.+
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~ 108 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENS 108 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHH
Confidence 56899999999999999999998642 23455544311 1224577777776
Q ss_pred Hh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 RS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
.. ....|++|||+|.+. ....+.||..|+... ..+.+|.+|+.++.+.+.+++ |+ ..
T Consensus 109 ~~~P~~~~~KVvIIDEah~Ls-------------~~A~NaLLK~LEePp---~~v~fIlatte~~Kl~~tI~S--Rc-~~ 169 (491)
T PRK14964 109 CYLPISSKFKVYIIDEVHMLS-------------NSAFNALLKTLEEPA---PHVKFILATTEVKKIPVTIIS--RC-QR 169 (491)
T ss_pred HhccccCCceEEEEeChHhCC-------------HHHHHHHHHHHhCCC---CCeEEEEEeCChHHHHHHHHH--hh-ee
Confidence 53 234699999999884 235677888777653 356666677788889899988 77 45
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWF 871 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~A~~ 871 (934)
+.+.. ++.++...+++...++.+.. ++..+..+++.+ +.+.+++.+++..+..
T Consensus 170 ~~f~~-l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s--~GslR~alslLdqli~ 223 (491)
T PRK14964 170 FDLQK-IPTDKLVEHLVDIAKKENIEHDEESLKLIAENS--SGSMRNALFLLEQAAI 223 (491)
T ss_pred eeccc-ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHH
Confidence 67763 66677777777777665443 223366777773 4567777777766554
No 218
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.87 E-value=6.1e-09 Score=111.26 Aligned_cols=154 Identities=25% Similarity=0.264 Sum_probs=96.8
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC------cEEEecCccccccccc-hhhhhhHHHHHHHHhCC---------C-cE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL------NFLSVKGPELINMYIG-ESEKNVRDIFQKARSAR---------P-CV 746 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~------~~i~v~~~~l~~~~~G-ese~~v~~lf~~A~~~~---------p-~v 746 (934)
..+.|||||||||||+.|+++|.++.. .+.+.+.++-.+.-++ +.-+ -|.+..... | .|
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik----~fakl~~~~~~~~~~~~~~fKi 132 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIK----NFAKLTVLLKRSDGYPCPPFKI 132 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhc----CHHHHhhccccccCCCCCcceE
Confidence 358999999999999999999998755 2333444443332222 1111 233332211 2 69
Q ss_pred EEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHH
Q 002337 747 IFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSY 826 (934)
Q Consensus 747 lfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~ 826 (934)
++|||.|++.. ...+.|.+-||.. .+.+++|..||.++.|.+-+.+ |..+..+=++ ..+.
T Consensus 133 iIlDEcdsmts-------------daq~aLrr~mE~~---s~~trFiLIcnylsrii~pi~S--RC~KfrFk~L--~d~~ 192 (346)
T KOG0989|consen 133 IILDECDSMTS-------------DAQAALRRTMEDF---SRTTRFILICNYLSRIIRPLVS--RCQKFRFKKL--KDED 192 (346)
T ss_pred EEEechhhhhH-------------HHHHHHHHHHhcc---ccceEEEEEcCChhhCChHHHh--hHHHhcCCCc--chHH
Confidence 99999999952 3455666666664 3567788899999998888888 8776555454 3444
Q ss_pred HHHHHHHHHhcCCCCcCCC-HHHHHhhCCCCCCHHHHHHHH
Q 002337 827 RERVLKALTRKFKLLEDVS-LYSIAKKCPPNFTGADMYALC 866 (934)
Q Consensus 827 r~~Il~~~~~~~~~~~~~~-l~~la~~~t~g~sgaDl~~l~ 866 (934)
....|+....+-++.-+-+ +..+++. +++||+..+
T Consensus 193 iv~rL~~Ia~~E~v~~d~~al~~I~~~-----S~GdLR~Ai 228 (346)
T KOG0989|consen 193 IVDRLEKIASKEGVDIDDDALKLIAKI-----SDGDLRRAI 228 (346)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHH-----cCCcHHHHH
Confidence 5566666665555443333 4445544 567777654
No 219
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.87 E-value=1.8e-08 Score=119.43 Aligned_cols=155 Identities=14% Similarity=0.202 Sum_probs=101.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhcccccc
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVS 473 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~el-----g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~ 473 (934)
.++|||++|+|||.|++++++++ +..++.+++.+++..+...........|..- ...+.+|+||||+.+..+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke- 393 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE- 393 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH-
Confidence 49999999999999999999987 5678888887766544322111111223321 1246899999999886521
Q ss_pred CCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCC---CCCChhhhcccce--EE
Q 002337 474 NESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS---EGLPPTIRRCFSH--EI 548 (934)
Q Consensus 474 ~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~---~~Ld~aLrrrF~~--eI 548 (934)
....++..+++.+.+ .+.-+||.+...+ ..+++.|++||.. .+
T Consensus 394 ---------~tqeeLF~l~N~l~e-----------------------~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv 441 (617)
T PRK14086 394 ---------STQEEFFHTFNTLHN-----------------------ANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLIT 441 (617)
T ss_pred ---------HHHHHHHHHHHHHHh-----------------------cCCCEEEecCCChHhhhhccHHHHhhhhcCceE
Confidence 123455566655432 2233444433333 3478999999866 56
Q ss_pred EcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC
Q 002337 549 SMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (934)
Q Consensus 549 ~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G 591 (934)
.+..||.+.|.+||+..++.... .+. ++.++.|+.+..+
T Consensus 442 ~I~~PD~EtR~aIL~kka~~r~l---~l~-~eVi~yLa~r~~r 480 (617)
T PRK14086 442 DVQPPELETRIAILRKKAVQEQL---NAP-PEVLEFIASRISR 480 (617)
T ss_pred EcCCCCHHHHHHHHHHHHHhcCC---CCC-HHHHHHHHHhccC
Confidence 99999999999999998765422 222 4556677776554
No 220
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=2.3e-08 Score=121.73 Aligned_cols=164 Identities=19% Similarity=0.201 Sum_probs=101.0
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEE-E----ecC-----------ccccccccch---hhhhhHHHHHHHH----
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFL-S----VKG-----------PELINMYIGE---SEKNVRDIFQKAR---- 740 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i-~----v~~-----------~~l~~~~~Ge---se~~v~~lf~~A~---- 740 (934)
+..+||+||||||||++|+++|+.++..-. . -.| .+++. +-+. .-..+|++.+.+.
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE-idAas~~kVDdIReLie~v~~~P~ 116 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE-VDAASRTKVDDTRELLDNVQYRPS 116 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE-eccccccCHHHHHHHHHHHHhhhh
Confidence 345699999999999999999998765310 0 000 11110 1111 1233566655543
Q ss_pred hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecC
Q 002337 741 SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGV 820 (934)
Q Consensus 741 ~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~ 820 (934)
.+...|+||||+|.|. ....+.||..|+.. ...+++|.+|+.+..|.+.+++ |+ ..+.|.
T Consensus 117 ~gk~KViIIDEAh~LT-------------~eAqNALLKtLEEP---P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fk- 176 (944)
T PRK14949 117 RGRFKVYLIDEVHMLS-------------RSSFNALLKTLEEP---PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLK- 176 (944)
T ss_pred cCCcEEEEEechHhcC-------------HHHHHHHHHHHhcc---CCCeEEEEECCCchhchHHHHH--hh-eEEeCC-
Confidence 2344699999999994 34677888888754 3456677778888888899888 87 456666
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHHHH
Q 002337 821 NSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADAW 870 (934)
Q Consensus 821 Pp~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~A~ 870 (934)
|...++-...|+..+++..+.-+ ..+..+++.+ +-+.+++.++|..|.
T Consensus 177 pLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S--~Gd~R~ALnLLdQal 225 (944)
T PRK14949 177 SLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAA--NGSMRDALSLTDQAI 225 (944)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 35566666666665554333222 2255566652 344566667765443
No 221
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.87 E-value=6.6e-08 Score=101.93 Aligned_cols=182 Identities=16% Similarity=0.199 Sum_probs=115.1
Q ss_pred HHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHH
Q 002337 375 TVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNT 451 (934)
Q Consensus 375 ~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~ 451 (934)
..+.|......++.. .+..++||+|++|||||+++|++..+. |+.+++|...++. .+..+++.
T Consensus 35 Qk~~l~~Nt~~Fl~G-----~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~---------~l~~l~~~ 100 (249)
T PF05673_consen 35 QKEALIENTEQFLQG-----LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG---------DLPELLDL 100 (249)
T ss_pred HHHHHHHHHHHHHcC-----CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc---------cHHHHHHH
Confidence 445555555444432 456789999999999999999999977 6788888665433 34555555
Q ss_pred hh-cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEec
Q 002337 452 AQ-SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (934)
Q Consensus 452 A~-~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatT 530 (934)
.+ ....-|||+|++. +.. + + .-...|+.+++-. ......+|++.||+
T Consensus 101 l~~~~~kFIlf~DDLs-Fe~-----~---d------~~yk~LKs~LeGg-----------------le~~P~NvliyATS 148 (249)
T PF05673_consen 101 LRDRPYKFILFCDDLS-FEE-----G---D------TEYKALKSVLEGG-----------------LEARPDNVLIYATS 148 (249)
T ss_pred HhcCCCCEEEEecCCC-CCC-----C---c------HHHHHHHHHhcCc-----------------cccCCCcEEEEEec
Confidence 44 2346899999975 221 0 1 1123344444311 01237889999999
Q ss_pred CCCCCCCh-----------------------hhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHh
Q 002337 531 DSSEGLPP-----------------------TIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIG 587 (934)
Q Consensus 531 n~~~~Ld~-----------------------aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~ 587 (934)
|+..-+++ +|-.||.-.|.|.+|++++-++|.+.++.....-...........++|.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 97543321 2334898899999999999999999998654331111111223345666
Q ss_pred hcCCCChHHHHHHHH
Q 002337 588 QTSGFMPRDLHALVA 602 (934)
Q Consensus 588 ~t~Gfv~~DL~~L~~ 602 (934)
...|.+|+--...+.
T Consensus 229 ~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 229 RRGGRSGRTARQFID 243 (249)
T ss_pred HcCCCCHHHHHHHHH
Confidence 777788875444443
No 222
>PHA02244 ATPase-like protein
Probab=98.86 E-value=1.1e-08 Score=113.95 Aligned_cols=130 Identities=14% Similarity=0.190 Sum_probs=83.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecC----ccccccccchHHHHH-HHHHHhhcCCCEEEEEcchhhcccc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCH----NLMASSERKTSAALA-QAFNTAQSYSPTILLLRDFDVFRNL 471 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~----~L~~~~~g~~e~~L~-~~f~~A~~~~P~IL~IDEID~L~~~ 471 (934)
+.+|||+||||||||++|+++|..++.+++.++.. ++.+. .... ..+. .-+-.|. ..+.+++|||++.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~-i~~~-g~~~dgpLl~A~-~~GgvLiLDEId~a~p- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGF-IDAN-GKFHETPFYEAF-KKGGLFFIDEIDASIP- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccc-cccc-ccccchHHHHHh-hcCCEEEEeCcCcCCH-
Confidence 44699999999999999999999999999998853 11110 0000 1111 1223333 3578999999997654
Q ss_pred ccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCC-----------CCCChhh
Q 002337 472 VSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-----------EGLPPTI 540 (934)
Q Consensus 472 ~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~-----------~~Ld~aL 540 (934)
.+...|..+++... +.........+..+.+|+|+|.. ..+++++
T Consensus 195 ---------------~vq~~L~~lLd~r~----------l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~Al 249 (383)
T PHA02244 195 ---------------EALIIINSAIANKF----------FDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGAT 249 (383)
T ss_pred ---------------HHHHHHHHHhccCe----------EEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHH
Confidence 33444555543210 00001111235678999999973 4589999
Q ss_pred hcccceEEEcCCCCHH
Q 002337 541 RRCFSHEISMGPLTEQ 556 (934)
Q Consensus 541 rrrF~~eI~i~~Pde~ 556 (934)
+.||. .++++.|++.
T Consensus 250 lDRFv-~I~~dyp~~~ 264 (383)
T PHA02244 250 LDRFA-PIEFDYDEKI 264 (383)
T ss_pred HhhcE-EeeCCCCcHH
Confidence 99997 6999988743
No 223
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.86 E-value=2.8e-09 Score=120.38 Aligned_cols=180 Identities=22% Similarity=0.321 Sum_probs=111.6
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccc---------cccccchhhhhh---HHHHHHHHhCCCcEE
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPEL---------INMYIGESEKNV---RDIFQKARSARPCVI 747 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l---------~~~~~Gese~~v---~~lf~~A~~~~p~vl 747 (934)
....||+.|.+||||..+|++|-+.. .-+|+.+||+.+ ++.--|....++ +--|+.|.+ ..|
T Consensus 245 Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTL 321 (550)
T COG3604 245 SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADG---GTL 321 (550)
T ss_pred CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeecCC---CeE
Confidence 46799999999999999999997665 568999999544 443333333332 234555544 499
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeee-------ecC
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLY-------VGV 820 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~-------v~~ 820 (934)
|+|||..|... -+....+-+.+.-+..+.|-....-+|.||+||||- |- ...+-|+|-.-+| +.+
T Consensus 322 FLDEIGelPL~-----lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRD--L~-~~V~~G~FRaDLYyRLsV~Pl~l 393 (550)
T COG3604 322 FLDEIGELPLA-----LQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRD--LE-EMVRDGEFRADLYYRLSVFPLEL 393 (550)
T ss_pred echhhccCCHH-----HHHHHHHHHhhcceeecCCCceeEEEEEEEeccchh--HH-HHHHcCcchhhhhhcccccccCC
Confidence 99999887532 122222223333333333433344579999999983 33 4445689966655 334
Q ss_pred CCCHHHHHHHH---HHHHhcC----CC-CcCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002337 821 NSDVSYRERVL---KALTRKF----KL-LEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 873 (934)
Q Consensus 821 Pp~~~~r~~Il---~~~~~~~----~~-~~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A 873 (934)
||-.++..+|. +.+++++ .. ....+-+.+-.-..-.|-| ++|++++.+|+..|
T Consensus 394 PPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 394 PPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 88888888774 3444433 32 1112222222211235666 89999999999988
No 224
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=4e-08 Score=117.50 Aligned_cols=176 Identities=19% Similarity=0.234 Sum_probs=113.3
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEE
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEY 428 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~------------------------~~~I 428 (934)
+.+++.|...+.. -+.+.++||+||+|+||||+++++|+.++.. ++++
T Consensus 22 e~vv~~L~~ai~~--------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 22 EHVVKALQNALDE--------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred HHHHHHHHHHHHc--------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 3556666665532 1345679999999999999999999998542 1122
Q ss_pred ecCccccccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccc
Q 002337 429 SCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (934)
Q Consensus 429 ~~~~L~~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~ 504 (934)
+.. .......++.+++.+.. ....|++|||+|.|.. ..+..+| +.++.
T Consensus 94 daA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~---------------~A~NALL-KtLEE------ 145 (709)
T PRK08691 94 DAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK---------------SAFNAML-KTLEE------ 145 (709)
T ss_pred ecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH---------------HHHHHHH-HHHHh------
Confidence 211 12234456776665432 2346999999997643 1122233 22221
Q ss_pred cccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHH
Q 002337 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (934)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~ 584 (934)
....+.+|.+|+.+..+.+.+++|+. .+.+..++.++....++..++.... .+ ....+..
T Consensus 146 ---------------Pp~~v~fILaTtd~~kL~~TIrSRC~-~f~f~~Ls~eeI~~~L~~Il~kEgi---~i-d~eAL~~ 205 (709)
T PRK08691 146 ---------------PPEHVKFILATTDPHKVPVTVLSRCL-QFVLRNMTAQQVADHLAHVLDSEKI---AY-EPPALQL 205 (709)
T ss_pred ---------------CCCCcEEEEEeCCccccchHHHHHHh-hhhcCCCCHHHHHHHHHHHHHHcCC---Cc-CHHHHHH
Confidence 14567788888899999999999884 8899999999999999887765432 12 2344566
Q ss_pred HHhhcCCCChHHHHHHHHHHH
Q 002337 585 IIGQTSGFMPRDLHALVADAG 605 (934)
Q Consensus 585 la~~t~Gfv~~DL~~L~~~A~ 605 (934)
+++.+. -..+|+..++..+.
T Consensus 206 Ia~~A~-GslRdAlnLLDqai 225 (709)
T PRK08691 206 LGRAAA-GSMRDALSLLDQAI 225 (709)
T ss_pred HHHHhC-CCHHHHHHHHHHHH
Confidence 666554 45666666665543
No 225
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.84 E-value=1.1e-08 Score=115.39 Aligned_cols=143 Identities=24% Similarity=0.330 Sum_probs=89.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHH------HHHhh--cCCC--EEEEEcchh
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQA------FNTAQ--SYSP--TILLLRDFD 466 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~------f~~A~--~~~P--~IL~IDEID 466 (934)
+.++||.||||||||++++.+|..++.+++.|.|..-+.....-........ |..-. -... +++++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 3459999999999999999999999999999999853332111111111110 00000 0011 499999999
Q ss_pred hccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhh-hhhcccEEEEEecCC-----CCCCChhh
Q 002337 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIE-KICRQQVLLVAAADS-----SEGLPPTI 540 (934)
Q Consensus 467 ~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~-~~~~~~ViVIatTn~-----~~~Ld~aL 540 (934)
...+ ++...|.+.++.... ...... .....+++||+|.|. ...+++++
T Consensus 123 ra~p----------------~~q~aLl~~l~e~~v----------tv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ 176 (329)
T COG0714 123 RAPP----------------EVQNALLEALEERQV----------TVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEAL 176 (329)
T ss_pred cCCH----------------HHHHHHHHHHhCcEE----------EECCcCCcCCCCCCEEEEccCccccCCCcCCCHHH
Confidence 6543 455555555543110 011111 233678899999993 34589999
Q ss_pred hcccceEEEcCCC-CHHHHHHHHHHh
Q 002337 541 RRCFSHEISMGPL-TEQQRVEMLSQL 565 (934)
Q Consensus 541 rrrF~~eI~i~~P-de~~R~~IL~~l 565 (934)
++||...+.++.| ++.+...++...
T Consensus 177 ldRf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 177 LDRFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred HhhEEEEEecCCCCchHHHHHHHHhC
Confidence 9999889999999 555555554443
No 226
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=2.5e-08 Score=118.72 Aligned_cols=143 Identities=16% Similarity=0.231 Sum_probs=92.8
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCc------------------------EEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLN------------------------FLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~------------------------~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
...+||+||+|||||++|+++|+.+... ++.+++.. ..| -..++.+.+.+
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~----~~~--Id~iR~L~~~~ 111 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS----NRG--IDDAKRLKEAI 111 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEeccc----ccC--HHHHHHHHHHH
Confidence 3578999999999999999999887542 33333211 011 12234433322
Q ss_pred H----hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 R----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~----~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
. .....||||||+|.+. ....+.||..|+.. ...+++|.+||.++.+.+.+++ |+. .
T Consensus 112 ~~~p~~g~~kVIIIDEad~Lt-------------~~a~naLLk~LEEP---~~~~ifILaTt~~~kll~TI~S--Rcq-~ 172 (624)
T PRK14959 112 GYAPMEGRYKVFIIDEAHMLT-------------REAFNALLKTLEEP---PARVTFVLATTEPHKFPVTIVS--RCQ-H 172 (624)
T ss_pred HhhhhcCCceEEEEEChHhCC-------------HHHHHHHHHHhhcc---CCCEEEEEecCChhhhhHHHHh--hhh-c
Confidence 2 2345799999999984 23467788777753 2457777788888888888887 874 6
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCC-cCCCHHHHHhh
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKK 852 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~ 852 (934)
+.|+ |++.++-..+|+..+++..+. .+..+..+++.
T Consensus 173 i~F~-pLs~~eL~~~L~~il~~egi~id~eal~lIA~~ 209 (624)
T PRK14959 173 FTFT-RLSEAGLEAHLTKVLGREGVDYDPAAVRLIARR 209 (624)
T ss_pred cccC-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7777 466777777777766655432 22235556655
No 227
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=6.7e-08 Score=119.57 Aligned_cols=157 Identities=15% Similarity=0.163 Sum_probs=99.4
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC--------------------------cEEEecCccccccccchhhhhhHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL--------------------------NFLSVKGPELINMYIGESEKNVRDIFQ 737 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~--------------------------~~i~v~~~~l~~~~~Gese~~v~~lf~ 737 (934)
+..+||+||+|||||++|+++|+.++. .|+.+++... . .-..+|++-+
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~----~--~Vd~iR~l~~ 110 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASH----G--GVDDARELRE 110 (824)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEeccccc----C--CHHHHHHHHH
Confidence 345799999999999999999998753 1233332110 0 1123444433
Q ss_pred HH----HhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcc
Q 002337 738 KA----RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFD 813 (934)
Q Consensus 738 ~A----~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd 813 (934)
.+ ......|+||||+|.|. ....+.||+.|+... ..+++|.+|+.++.|-+.|++ |.
T Consensus 111 ~~~~~p~~~~~KV~IIDEad~lt-------------~~a~NaLLK~LEEpP---~~~~fIl~tt~~~kLl~TIrS--Rc- 171 (824)
T PRK07764 111 RAFFAPAESRYKIFIIDEAHMVT-------------PQGFNALLKIVEEPP---EHLKFIFATTEPDKVIGTIRS--RT- 171 (824)
T ss_pred HHHhchhcCCceEEEEechhhcC-------------HHHHHHHHHHHhCCC---CCeEEEEEeCChhhhhHHHHh--he-
Confidence 32 23455799999999995 234667777777653 456666677888888889888 76
Q ss_pred eeeeecCCCCHHHHHHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHH
Q 002337 814 KLLYVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 814 ~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
..+.|.. ...+....+|+..+++.++.-+ ..+..+++.+ |-+-.++.+++..
T Consensus 172 ~~v~F~~-l~~~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEK 224 (824)
T PRK07764 172 HHYPFRL-VPPEVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQ 224 (824)
T ss_pred eEEEeeC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 4677774 5667777777777765554322 2245566663 3344555555544
No 228
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.83 E-value=3.7e-08 Score=94.50 Aligned_cols=128 Identities=20% Similarity=0.311 Sum_probs=82.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCc---EEEEecCccccc--------------cccchHHHHHHHHHHhhcCCCEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIH---VVEYSCHNLMAS--------------SERKTSAALAQAFNTAQSYSPTI 459 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~---~~~I~~~~L~~~--------------~~g~~e~~L~~~f~~A~~~~P~I 459 (934)
+..++|+|||||||||+++.+|..+... ++.+++...... .........+..+..++...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4569999999999999999999999764 788877654322 11334556778888888777899
Q ss_pred EEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCC-CCCCCh
Q 002337 460 LLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADS-SEGLPP 538 (934)
Q Consensus 460 L~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~-~~~Ld~ 538 (934)
+++||++.+.... .......... ..............+|+++|. ....+.
T Consensus 82 iiiDei~~~~~~~---------------~~~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 132 (148)
T smart00382 82 LILDEITSLLDAE---------------QEALLLLLEE--------------LRLLLLLKSEKNLTVILTTNDEKDLGPA 132 (148)
T ss_pred EEEECCcccCCHH---------------HHHHHHhhhh--------------hHHHHHHHhcCCCEEEEEeCCCccCchh
Confidence 9999999876511 0000000000 000111222556788888886 444566
Q ss_pred hhhcccceEEEcCCC
Q 002337 539 TIRRCFSHEISMGPL 553 (934)
Q Consensus 539 aLrrrF~~eI~i~~P 553 (934)
.++++++..+.+..+
T Consensus 133 ~~~~~~~~~~~~~~~ 147 (148)
T smart00382 133 LLRRRFDRRIVLLLI 147 (148)
T ss_pred hhhhccceEEEecCC
Confidence 666678777776643
No 229
>PRK08727 hypothetical protein; Validated
Probab=98.82 E-value=5.2e-08 Score=104.34 Aligned_cols=146 Identities=15% Similarity=0.172 Sum_probs=90.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccC
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSN 474 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~ 474 (934)
..++|+||+|||||+|+++++.++ |.....++..++ ...+...++... ...+++|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~l~--~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA--------AGRLRDALEALE--GRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh--------hhhHHHHHHHHh--cCCEEEEeCcccccCCh--
Confidence 459999999999999999998775 555556654332 223334444443 34699999999776411
Q ss_pred CCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCC---Chhhhccc--ceEEE
Q 002337 475 ESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGL---PPTIRRCF--SHEIS 549 (934)
Q Consensus 475 ~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~L---d~aLrrrF--~~eI~ 549 (934)
.....+..++++..+ .+.-+++.+...|..+ .+++++|| ...+.
T Consensus 110 --------~~~~~lf~l~n~~~~-----------------------~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~ 158 (233)
T PRK08727 110 --------EDEVALFDFHNRARA-----------------------AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIG 158 (233)
T ss_pred --------HHHHHHHHHHHHHHH-----------------------cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEE
Confidence 011223333332211 2222344444455554 68999986 45789
Q ss_pred cCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcC
Q 002337 550 MGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTS 590 (934)
Q Consensus 550 i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~ 590 (934)
+++|+.++|.+|++........ .. .++.+..++.++.
T Consensus 159 l~~~~~e~~~~iL~~~a~~~~l---~l-~~e~~~~La~~~~ 195 (233)
T PRK08727 159 LPVLDDVARAAVLRERAQRRGL---AL-DEAAIDWLLTHGE 195 (233)
T ss_pred ecCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHhCC
Confidence 9999999999999986644221 22 2455677777765
No 230
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=5e-08 Score=111.66 Aligned_cols=163 Identities=19% Similarity=0.264 Sum_probs=99.7
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccc----c--ccccchhhhhhHHHHHHHHh----CCCcEEEecccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL----I--NMYIGESEKNVRDIFQKARS----ARPCVIFFDELD 753 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l----~--~~~~Gese~~v~~lf~~A~~----~~p~vlfiDEid 753 (934)
+.++|||||||+|||++|+++|+....+.....+..+ + +.........++++++.++. ..+.||++||+|
T Consensus 39 ~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~ 118 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVH 118 (367)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChh
Confidence 4689999999999999999999987542111110000 0 01111123567777776653 234699999999
Q ss_pred ccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHH
Q 002337 754 SLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKA 833 (934)
Q Consensus 754 ~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~ 833 (934)
.+.. ..++.|+..++.. ....++|.+|+.+..+.+++.+ |+. .+.++ |++.++...++..
T Consensus 119 ~l~~-------------~~~~~ll~~le~~---~~~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~-~~~~~~l~~~l~~ 178 (367)
T PRK14970 119 MLSS-------------AAFNAFLKTLEEP---PAHAIFILATTEKHKIIPTILS--RCQ-IFDFK-RITIKDIKEHLAG 178 (367)
T ss_pred hcCH-------------HHHHHHHHHHhCC---CCceEEEEEeCCcccCCHHHHh--cce-eEecC-CccHHHHHHHHHH
Confidence 8742 2356666666653 2344555566777888899987 664 57777 4677777777777
Q ss_pred HHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHH
Q 002337 834 LTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 834 ~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
..++.++. ++..+..++..+ |.+-+.+.+.+..
T Consensus 179 ~~~~~g~~i~~~al~~l~~~~--~gdlr~~~~~lek 212 (367)
T PRK14970 179 IAVKEGIKFEDDALHIIAQKA--DGALRDALSIFDR 212 (367)
T ss_pred HHHHcCCCCCHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 66665542 233456666662 3344444444443
No 231
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.81 E-value=1.9e-07 Score=113.20 Aligned_cols=158 Identities=18% Similarity=0.268 Sum_probs=89.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEecCcccccc-------ccchH----HHHHHHHHH-----
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMASS-------ERKTS----AALAQAFNT----- 451 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el----------g~~~~~I~~~~L~~~~-------~g~~e----~~L~~~f~~----- 451 (934)
.+++|+|||||||||+++++++.. +.+++.++|..+-... .+... ...+..+..
T Consensus 176 ~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~ 255 (615)
T TIGR02903 176 QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPE 255 (615)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCc
Confidence 469999999999999999998766 3468999987652100 00000 000011110
Q ss_pred -----hhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhc----CCCccccccccCCCCchhhhhhhhcc
Q 002337 452 -----AQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFT----EPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 452 -----A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll----~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
......++|||||++.|.+. ....+...++.-. ...+...+.....+ ...........
T Consensus 256 ~~~g~v~~asgGvL~LDEi~~Ld~~------------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~-ik~~~~~~~~~ 322 (615)
T TIGR02903 256 PKTGLVTDAHGGVLFIDEIGELDPL------------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY-IKKLFEEGAPA 322 (615)
T ss_pred hhcCchhhcCCCeEEEeccccCCHH------------HHHHHHHHHhhCeEEeecceeccCCcccchh-hhhhcccCccc
Confidence 01224679999999877541 1223333333210 00000000000000 00000111234
Q ss_pred cEEEEEec-CCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhcccc
Q 002337 523 QVLLVAAA-DSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPV 569 (934)
Q Consensus 523 ~ViVIatT-n~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~ 569 (934)
.+++|++| +.+..+++++++||. .+.+++++.+++.+|++..+...
T Consensus 323 ~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~ 369 (615)
T TIGR02903 323 DFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKI 369 (615)
T ss_pred eEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHc
Confidence 56666655 567889999999986 78899999999999999987643
No 232
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=4.1e-08 Score=117.41 Aligned_cols=160 Identities=19% Similarity=0.256 Sum_probs=105.9
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCc------------------------EEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLN------------------------FLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~------------------------~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+..+||+||+|+|||++|+++|+.++.. ++.+++. .+.....++++++.+
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaA------s~~gVd~IRelle~a 111 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAA------SNTGIDNIREVLENA 111 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEecc------ccCCHHHHHHHHHHH
Confidence 4678999999999999999999986432 1222211 111224577777765
Q ss_pred Hh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 RS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
.. ....|+||||+|.+. ....+.||..|+... ..+.+|.+|+.+..+.+.+++ |+ ..
T Consensus 112 ~~~P~~gk~KVIIIDEad~Ls-------------~~A~NALLKtLEEPp---~~v~fILaTtd~~kL~~TIrS--RC-~~ 172 (709)
T PRK08691 112 QYAPTAGKYKVYIIDEVHMLS-------------KSAFNAMLKTLEEPP---EHVKFILATTDPHKVPVTVLS--RC-LQ 172 (709)
T ss_pred HhhhhhCCcEEEEEECccccC-------------HHHHHHHHHHHHhCC---CCcEEEEEeCCccccchHHHH--HH-hh
Confidence 32 344699999999874 234567777777542 456677777888888888886 87 34
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADAWF 871 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~A~~ 871 (934)
+.|. +++.++-..+++..+++.++.-+ ..+..|++.+ +-+.+++.+++..+..
T Consensus 173 f~f~-~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 173 FVLR-NMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred hhcC-CCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 5555 36677777777777776554322 2366777763 5566777777765543
No 233
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.4e-07 Score=112.67 Aligned_cols=176 Identities=19% Similarity=0.262 Sum_probs=109.6
Q ss_pred chHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc--------------------------E
Q 002337 372 QGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH--------------------------V 425 (934)
Q Consensus 372 ~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~--------------------------~ 425 (934)
++.+++.|...+..- +.+..+||+||+||||||+++++|+.++.. +
T Consensus 18 q~~i~~~L~~~i~~~--------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 18 QEHVTEPLSSALDAG--------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred cHHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceE
Confidence 345666666665421 334457999999999999999999998631 2
Q ss_pred EEEecCccccccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCcc
Q 002337 426 VEYSCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAE 501 (934)
Q Consensus 426 ~~I~~~~L~~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~ 501 (934)
++++..+ ......++++.+.+.. ...-|++|||+|.|.. .....|...++.
T Consensus 90 ieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~----------------~A~NALLK~LEE--- 144 (584)
T PRK14952 90 VELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT----------------AGFNALLKIVEE--- 144 (584)
T ss_pred EEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH----------------HHHHHHHHHHhc---
Confidence 2222211 1123445555444431 2346999999998754 112222233321
Q ss_pred ccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHH
Q 002337 502 DEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEF 581 (934)
Q Consensus 502 ~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~ 581 (934)
....+++|.+|+.+..|.+.+++|. +.+.|..++.++..+.++..++.... ..+ +..
T Consensus 145 ------------------pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi---~i~-~~a 201 (584)
T PRK14952 145 ------------------PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGV---VVD-DAV 201 (584)
T ss_pred ------------------CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCC---CCC-HHH
Confidence 1567888888888999999999996 48999999999988888877764432 121 233
Q ss_pred HHHHHhhcCCCChHHHHHHHHHH
Q 002337 582 VKDIIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 582 L~~la~~t~Gfv~~DL~~L~~~A 604 (934)
+..++. ..|-..+|..+++...
T Consensus 202 l~~Ia~-~s~GdlR~aln~Ldql 223 (584)
T PRK14952 202 YPLVIR-AGGGSPRDTLSVLDQL 223 (584)
T ss_pred HHHHHH-HcCCCHHHHHHHHHHH
Confidence 444444 4445556666666543
No 234
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=6.3e-08 Score=114.63 Aligned_cols=159 Identities=21% Similarity=0.226 Sum_probs=100.2
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC------------------------cEEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL------------------------NFLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~------------------------~~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+..+||+||+|+|||++|+++|+.+.. .++.+++.. ..| -..++++.+.+
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas----~~g--vd~ir~ii~~~ 111 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAAS----RTG--VEETKEILDNI 111 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccc----ccC--HHHHHHHHHHH
Confidence 345899999999999999999987643 223332211 111 12345665554
Q ss_pred Hh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 RS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
.. ....|++|||+|.+. ....+.||..|+... ..+.+|.+|+.+..+.+.+++ |. ..
T Consensus 112 ~~~p~~g~~kViIIDEa~~ls-------------~~a~naLLK~LEepp---~~v~fIL~Ttd~~kil~tI~S--Rc-~~ 172 (546)
T PRK14957 112 QYMPSQGRYKVYLIDEVHMLS-------------KQSFNALLKTLEEPP---EYVKFILATTDYHKIPVTILS--RC-IQ 172 (546)
T ss_pred HhhhhcCCcEEEEEechhhcc-------------HHHHHHHHHHHhcCC---CCceEEEEECChhhhhhhHHH--he-ee
Confidence 42 345699999999884 235667777777542 345555566667888888887 77 67
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHHHH
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADAW 870 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~A~ 870 (934)
++|.. ++.++-...++..+++.++..+ ..+..+++. .+-+.+++.+++..+.
T Consensus 173 ~~f~~-Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~--s~GdlR~alnlLek~i 225 (546)
T PRK14957 173 LHLKH-ISQADIKDQLKIILAKENINSDEQSLEYIAYH--AKGSLRDALSLLDQAI 225 (546)
T ss_pred EEeCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 77874 6677777777776666544322 234566666 2445566666665543
No 235
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.80 E-value=5.3e-08 Score=108.95 Aligned_cols=136 Identities=27% Similarity=0.453 Sum_probs=84.1
Q ss_pred CcceecCCCCCcchHHHHHHHHHc-------CC--cEEEecC-ccc--------ccc---------------ccchh--h
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC-------SL--NFLSVKG-PEL--------INM---------------YIGES--E 729 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~-------~~--~~i~v~~-~~l--------~~~---------------~~Ges--e 729 (934)
.++||+|+||||||++|++++..+ +. ++..+.+ +++ ... .+|.. +
T Consensus 30 ~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~ 109 (334)
T PRK13407 30 GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIE 109 (334)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhh
Confidence 689999999999999999999887 22 2222211 011 000 12210 0
Q ss_pred hhh---HHHHHHH--HhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccC---------Cc-CCCCCEEEEE
Q 002337 730 KNV---RDIFQKA--RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG---------LN-DSSQDLFIIG 794 (934)
Q Consensus 730 ~~v---~~lf~~A--~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg---------~~-~~~~~v~vI~ 794 (934)
+.+ ...|+.- ......+||+||++.+. ..+++.|+..|+. .. ....++++|+
T Consensus 110 ~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~-------------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviA 176 (334)
T PRK13407 110 RALTRGEKAFEPGLLARANRGYLYIDEVNLLE-------------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVG 176 (334)
T ss_pred hhhhcCCeeecCCceEEcCCCeEEecChHhCC-------------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEe
Confidence 000 0011100 01122499999999884 2355555555542 11 1234689999
Q ss_pred EcCCCC-CCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHH
Q 002337 795 ASNRPD-LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALT 835 (934)
Q Consensus 795 aTNrp~-~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~ 835 (934)
++|..+ .+.++++. ||...+.++.|.+.++|.+|++...
T Consensus 177 t~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 177 SGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred cCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 998655 58899999 9999999998777789999997643
No 236
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=5.4e-08 Score=114.87 Aligned_cols=157 Identities=20% Similarity=0.259 Sum_probs=101.6
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC-----------------------cEEEecCccccccccchhhhhhHHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL-----------------------NFLSVKGPELINMYIGESEKNVRDIFQKAR 740 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~-----------------------~~i~v~~~~l~~~~~Gese~~v~~lf~~A~ 740 (934)
+..+||+||||||||++|+++|+.+.. +++.+++.. ...-..++++.+.+.
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~ 109 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVL 109 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHh
Confidence 345699999999999999999987742 134444321 111234566655443
Q ss_pred h----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceee
Q 002337 741 S----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLL 816 (934)
Q Consensus 741 ~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i 816 (934)
. ..+.|++|||+|.+. ...++.|+..|+.. ...+++|.+||.+..+.+.+.+ |+. .+
T Consensus 110 ~~p~~~~~kVVIIDEad~ls-------------~~a~naLLk~LEep---~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~ 170 (504)
T PRK14963 110 LAPLRGGRKVYILDEAHMMS-------------KSAFNALLKTLEEP---PEHVIFILATTEPEKMPPTILS--RTQ-HF 170 (504)
T ss_pred hccccCCCeEEEEECccccC-------------HHHHHHHHHHHHhC---CCCEEEEEEcCChhhCChHHhc--ceE-EE
Confidence 2 356799999998763 23567777777754 2456677788889999999988 765 67
Q ss_pred eecCCCCHHHHHHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHH
Q 002337 817 YVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 817 ~v~~Pp~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
.|. |++.++-...++...++.++.-+ ..+..+++.+ +-+-+++.++++.
T Consensus 171 ~f~-~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lek 220 (504)
T PRK14963 171 RFR-RLTEEEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLER 220 (504)
T ss_pred Eec-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 887 47777777888777766554322 2355666662 2233444444443
No 237
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.2e-07 Score=111.93 Aligned_cols=173 Identities=20% Similarity=0.305 Sum_probs=108.7
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----------------------cEEEEe
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGI-----------------------HVVEYS 429 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~-----------------------~~~~I~ 429 (934)
..+++.|...+..- +.+..+||+|||||||||+++++|+.+.. .+.+++
T Consensus 20 ~~v~~~L~~~i~~~--------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~ 91 (504)
T PRK14963 20 EHVKEVLLAALRQG--------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEID 91 (504)
T ss_pred HHHHHHHHHHHHcC--------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEec
Confidence 35566666665421 33445799999999999999999999853 133333
Q ss_pred cCccccccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCcccccc
Q 002337 430 CHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDE 505 (934)
Q Consensus 430 ~~~L~~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~ 505 (934)
..+ ......++++.+.+.. ..+.+++|||+|.+.. .....+++.+ +.
T Consensus 92 ~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~---------------~a~naLLk~L-Ee------- 142 (504)
T PRK14963 92 AAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK---------------SAFNALLKTL-EE------- 142 (504)
T ss_pred ccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCH---------------HHHHHHHHHH-Hh-------
Confidence 321 1223345555443332 2457999999986642 1222333222 11
Q ss_pred ccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHH
Q 002337 506 ESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDI 585 (934)
Q Consensus 506 ~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~l 585 (934)
....+++|.+|+.+..+.+.+++|+. .+.+.+|+.++....++..++.... .. .+..+..+
T Consensus 143 --------------p~~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~~~egi---~i-~~~Al~~i 203 (504)
T PRK14963 143 --------------PPEHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLLEAEGR---EA-EPEALQLV 203 (504)
T ss_pred --------------CCCCEEEEEEcCChhhCChHHhcceE-EEEecCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHH
Confidence 13567777888889999999999875 7999999999999999887754332 22 24456777
Q ss_pred HhhcCCCChHHHHHHHH
Q 002337 586 IGQTSGFMPRDLHALVA 602 (934)
Q Consensus 586 a~~t~Gfv~~DL~~L~~ 602 (934)
+..+.|- .+++.++++
T Consensus 204 a~~s~Gd-lR~aln~Le 219 (504)
T PRK14963 204 ARLADGA-MRDAESLLE 219 (504)
T ss_pred HHHcCCC-HHHHHHHHH
Confidence 7766652 233433333
No 238
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=1.3e-07 Score=117.06 Aligned_cols=174 Identities=16% Similarity=0.179 Sum_probs=107.3
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc--------------------------EE
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH--------------------------VV 426 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~--------------------------~~ 426 (934)
+.+++.|...+.- -+.+..+||+||+||||||+++++|+.+.+. ++
T Consensus 21 e~v~~~L~~~i~~--------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ 92 (824)
T PRK07764 21 EHVTEPLSTALDS--------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT 92 (824)
T ss_pred HHHHHHHHHHHHh--------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE
Confidence 3455555555431 1334558999999999999999999999642 22
Q ss_pred EEecCccccccccchHHHHHHHHHHhh----cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccc
Q 002337 427 EYSCHNLMASSERKTSAALAQAFNTAQ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAED 502 (934)
Q Consensus 427 ~I~~~~L~~~~~g~~e~~L~~~f~~A~----~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~ 502 (934)
+++..+ ......++++.+.+. .....|+||||+|.|.. .-.+.|.++++.
T Consensus 93 eidaas------~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~----------------~a~NaLLK~LEE---- 146 (824)
T PRK07764 93 EIDAAS------HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP----------------QGFNALLKIVEE---- 146 (824)
T ss_pred Eecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH----------------HHHHHHHHHHhC----
Confidence 222211 112333444433322 23456999999998864 122233344332
Q ss_pred cccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHH
Q 002337 503 EDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFV 582 (934)
Q Consensus 503 ~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L 582 (934)
....+++|.+|+.++.|.+.+++|+. .+.|..++.++..++|+..++.... .++ ...+
T Consensus 147 -----------------pP~~~~fIl~tt~~~kLl~TIrSRc~-~v~F~~l~~~~l~~~L~~il~~EGv---~id-~eal 204 (824)
T PRK07764 147 -----------------PPEHLKFIFATTEPDKVIGTIRSRTH-HYPFRLVPPEVMRGYLERICAQEGV---PVE-PGVL 204 (824)
T ss_pred -----------------CCCCeEEEEEeCChhhhhHHHHhhee-EEEeeCCCHHHHHHHHHHHHHHcCC---CCC-HHHH
Confidence 14667788888888889999999984 8899999999988888887754322 111 3334
Q ss_pred HHHHhhcCCCChHHHHHHHHH
Q 002337 583 KDIIGQTSGFMPRDLHALVAD 603 (934)
Q Consensus 583 ~~la~~t~Gfv~~DL~~L~~~ 603 (934)
..++....| ..+++..+++.
T Consensus 205 ~lLa~~sgG-dlR~Al~eLEK 224 (824)
T PRK07764 205 PLVIRAGGG-SVRDSLSVLDQ 224 (824)
T ss_pred HHHHHHcCC-CHHHHHHHHHH
Confidence 555555554 44555554443
No 239
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=5e-08 Score=114.75 Aligned_cols=164 Identities=20% Similarity=0.246 Sum_probs=100.3
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCc-------E------EEecC---ccccccccc---hhhhhhHHHHHHHHh---
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLN-------F------LSVKG---PELINMYIG---ESEKNVRDIFQKARS--- 741 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~-------~------i~v~~---~~l~~~~~G---ese~~v~~lf~~A~~--- 741 (934)
+..+|||||+|+|||++|+++|..++.. . ..+.. ++++.- -+ ..-..+|.+.+.+..
T Consensus 38 ~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei-daas~~gvd~ir~I~~~~~~~P~ 116 (486)
T PRK14953 38 SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI-DAASNRGIDDIRALRDAVSYTPI 116 (486)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE-eCccCCCHHHHHHHHHHHHhCcc
Confidence 3457899999999999999999986521 0 00000 111100 01 112235666555543
Q ss_pred -CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecC
Q 002337 742 -ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGV 820 (934)
Q Consensus 742 -~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~ 820 (934)
..+.|++|||+|.+. ....+.||..++... ..+++|.+|+.++.+.+++++ |+. .+.+.
T Consensus 117 ~~~~KVvIIDEad~Lt-------------~~a~naLLk~LEepp---~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~- 176 (486)
T PRK14953 117 KGKYKVYIIDEAHMLT-------------KEAFNALLKTLEEPP---PRTIFILCTTEYDKIPPTILS--RCQ-RFIFS- 176 (486)
T ss_pred cCCeeEEEEEChhhcC-------------HHHHHHHHHHHhcCC---CCeEEEEEECCHHHHHHHHHH--hce-EEEcC-
Confidence 345799999999884 123466777766542 234555566678888889888 774 67777
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcCCC-HHHHHhhCCCCCCHHHHHHHHHHHH
Q 002337 821 NSDVSYRERVLKALTRKFKLLEDVS-LYSIAKKCPPNFTGADMYALCADAW 870 (934)
Q Consensus 821 Pp~~~~r~~Il~~~~~~~~~~~~~~-l~~la~~~t~g~sgaDl~~l~~~A~ 870 (934)
|++.++...+++..+++.++.-+.+ +..+++.+ +-+.+++.+++..+.
T Consensus 177 ~ls~~el~~~L~~i~k~egi~id~~al~~La~~s--~G~lr~al~~Ldkl~ 225 (486)
T PRK14953 177 KPTKEQIKEYLKRICNEEKIEYEEKALDLLAQAS--EGGMRDAASLLDQAS 225 (486)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 4778888888888888766533222 45566552 334455555555443
No 240
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.79 E-value=4.6e-08 Score=109.36 Aligned_cols=151 Identities=24% Similarity=0.260 Sum_probs=92.1
Q ss_pred cceecCCCCCcchHHHHHHHHHcC-----CcEEEecCccccccccchhhhhhHHHHH-HHHh-----CCCcEEEeccccc
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECS-----LNFLSVKGPELINMYIGESEKNVRDIFQ-KARS-----ARPCVIFFDELDS 754 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~-----~~~i~v~~~~l~~~~~Gese~~v~~lf~-~A~~-----~~p~vlfiDEid~ 754 (934)
+++|+||||||||++++++++++. .+++.+++++-.+ ...+++.+. .++. ..+.+|+|||+|.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~ 113 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADN 113 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCccc
Confidence 589999999999999999998862 3455555433211 111222222 2221 2346999999998
Q ss_pred cccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHH
Q 002337 755 LAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKAL 834 (934)
Q Consensus 755 l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~ 834 (934)
+.. ...+.|+..++.... +..+|.++|.+..+.+++.+ |+. .+.++ |++.++...+++..
T Consensus 114 l~~-------------~~~~~L~~~le~~~~---~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~-~l~~~ei~~~l~~~ 173 (319)
T PRK00440 114 LTS-------------DAQQALRRTMEMYSQ---NTRFILSCNYSSKIIDPIQS--RCA-VFRFS-PLKKEAVAERLRYI 173 (319)
T ss_pred CCH-------------HHHHHHHHHHhcCCC---CCeEEEEeCCccccchhHHH--Hhh-eeeeC-CCCHHHHHHHHHHH
Confidence 842 123345555554322 23455567777777777887 765 47787 47778888888888
Q ss_pred HhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHH
Q 002337 835 TRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCA 867 (934)
Q Consensus 835 ~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~ 867 (934)
+++.++. .+..+..+++. +++|++.+.+
T Consensus 174 ~~~~~~~i~~~al~~l~~~-----~~gd~r~~~~ 202 (319)
T PRK00440 174 AENEGIEITDDALEAIYYV-----SEGDMRKAIN 202 (319)
T ss_pred HHHcCCCCCHHHHHHHHHH-----cCCCHHHHHH
Confidence 7765542 22236667666 2345555443
No 241
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.4e-08 Score=108.63 Aligned_cols=100 Identities=32% Similarity=0.515 Sum_probs=76.1
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccc-cccchhhhhh-HHHHHHHH----hCCCcEEEecccccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN-MYIGESEKNV-RDIFQKAR----SARPCVIFFDELDSLAP 757 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~-~~~Gese~~v-~~lf~~A~----~~~p~vlfiDEid~l~~ 757 (934)
.++|||.||+|+|||+||+.+|+.++.||---++..|-. .|+|+.-.|+ ..+++.|. .+...||+|||||+++.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 579999999999999999999999999999998887754 5999987774 45555432 23456999999999997
Q ss_pred CCCCCCCCchh-HHHHHHhhhhhccCC
Q 002337 758 ARGASGDSGGV-MDRVVSQMLAEIDGL 783 (934)
Q Consensus 758 ~r~~~~~~~~~-~~~v~~~lL~~ldg~ 783 (934)
+..+.+-.-.+ ...|...||..++|.
T Consensus 177 kSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 177 KSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cCCCCCcccccCchHHHHHHHHHHcCc
Confidence 75433211111 145788888888875
No 242
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.79 E-value=2e-07 Score=105.99 Aligned_cols=163 Identities=17% Similarity=0.279 Sum_probs=103.9
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEE
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEY 428 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~------------------------~~~I 428 (934)
++.++.|...+.. -+.+..+||+||||+|||++++++|+.+... ++.+
T Consensus 20 ~~~~~~l~~~~~~--------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~ 91 (355)
T TIGR02397 20 EHIVQTLKNAIKN--------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEI 91 (355)
T ss_pred HHHHHHHHHHHHc--------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEe
Confidence 3455565554421 1344568999999999999999999997422 2222
Q ss_pred ecCccccccccchHHHHHHHHHHhhcC----CCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccc
Q 002337 429 SCHNLMASSERKTSAALAQAFNTAQSY----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (934)
Q Consensus 429 ~~~~L~~~~~g~~e~~L~~~f~~A~~~----~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~ 504 (934)
+.. .......++++++.+... ...+++|||+|.+.. .....+++ .++.
T Consensus 92 ~~~------~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~---------------~~~~~Ll~-~le~------ 143 (355)
T TIGR02397 92 DAA------SNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK---------------SAFNALLK-TLEE------ 143 (355)
T ss_pred ecc------ccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH---------------HHHHHHHH-HHhC------
Confidence 221 112334566676665532 235999999997743 11222222 2221
Q ss_pred cccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHH
Q 002337 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (934)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~ 584 (934)
....+++|.+|+++..+.+.+++|+. .+.+++|++.+..++++..++.... .++ +..+..
T Consensus 144 ---------------~~~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~~~~~~l~~~l~~~~~~~g~---~i~-~~a~~~ 203 (355)
T TIGR02397 144 ---------------PPEHVVFILATTEPHKIPATILSRCQ-RFDFKRIPLEDIVERLKKILDKEGI---KIE-DEALEL 203 (355)
T ss_pred ---------------CccceeEEEEeCCHHHHHHHHHhhee-EEEcCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHH
Confidence 13557777788888888899999884 8899999999999999987765432 222 345566
Q ss_pred HHhhcCC
Q 002337 585 IIGQTSG 591 (934)
Q Consensus 585 la~~t~G 591 (934)
++..+.|
T Consensus 204 l~~~~~g 210 (355)
T TIGR02397 204 IARAADG 210 (355)
T ss_pred HHHHcCC
Confidence 6666554
No 243
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=1.3e-07 Score=112.50 Aligned_cols=175 Identities=18% Similarity=0.281 Sum_probs=110.9
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEE
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEY 428 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~------------------------~~~I 428 (934)
+.+++.|...+.- -+.+..+||+||+|+||||+|+++|+.++.. ++++
T Consensus 22 ~~v~~~L~~~i~~--------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 22 EHVVRALTNALEQ--------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred HHHHHHHHHHHHc--------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 3556666555431 1334568999999999999999999998642 1222
Q ss_pred ecCccccccccchHHHHHHHHHHhhcC----CCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccc
Q 002337 429 SCHNLMASSERKTSAALAQAFNTAQSY----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (934)
Q Consensus 429 ~~~~L~~~~~g~~e~~L~~~f~~A~~~----~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~ 504 (934)
+.. .......++++.+.+... ...|++|||+|.+.. .....+| ..++.
T Consensus 94 ~~~------~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~---------------~a~naLL-K~LEe------ 145 (527)
T PRK14969 94 DAA------SNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK---------------SAFNAML-KTLEE------ 145 (527)
T ss_pred ecc------ccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH---------------HHHHHHH-HHHhC------
Confidence 211 122344566666665421 235999999997754 1122233 22221
Q ss_pred cccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHH
Q 002337 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (934)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~ 584 (934)
....+.+|.+|+.+..+.+.+++|+ ..+.+..++.++-...++..++.... .. ....+..
T Consensus 146 ---------------pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi---~~-~~~al~~ 205 (527)
T PRK14969 146 ---------------PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENI---PF-DATALQL 205 (527)
T ss_pred ---------------CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHH
Confidence 1466788888888999998899887 48999999999988888776653321 11 2344566
Q ss_pred HHhhcCCCChHHHHHHHHHH
Q 002337 585 IIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 585 la~~t~Gfv~~DL~~L~~~A 604 (934)
++..+.| ..++...++..+
T Consensus 206 la~~s~G-slr~al~lldqa 224 (527)
T PRK14969 206 LARAAAG-SMRDALSLLDQA 224 (527)
T ss_pred HHHHcCC-CHHHHHHHHHHH
Confidence 6666544 456666666554
No 244
>PRK06620 hypothetical protein; Validated
Probab=98.78 E-value=4.1e-08 Score=103.63 Aligned_cols=132 Identities=12% Similarity=0.235 Sum_probs=86.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCC
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESL 477 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~ 477 (934)
.+++||||+|||||+|++++++..+..+.. .... . ...+ . ...+++|||||.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-------~----~~~~---~--~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-------N----EEIL---E--KYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-------c----hhHH---h--cCCEEEEeccccch--------
Confidence 469999999999999999999988753322 1100 0 1111 1 23689999999431
Q ss_pred CCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCC--CChhhhcccce--EEEcCCC
Q 002337 478 PNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG--LPPTIRRCFSH--EISMGPL 553 (934)
Q Consensus 478 ~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~--Ld~aLrrrF~~--eI~i~~P 553 (934)
..++..+++.+.+ .+..++++++..|.. + +++++|+.. .+.+.+|
T Consensus 99 -------~~~lf~l~N~~~e-----------------------~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~p 147 (214)
T PRK06620 99 -------EPALLHIFNIINE-----------------------KQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSP 147 (214)
T ss_pred -------HHHHHHHHHHHHh-----------------------cCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCC
Confidence 1245555555432 445677777766655 5 789999753 6899999
Q ss_pred CHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcC
Q 002337 554 TEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTS 590 (934)
Q Consensus 554 de~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~ 590 (934)
+.+.+.++++..++.... .+ .++.++.++.+..
T Consensus 148 d~~~~~~~l~k~~~~~~l---~l-~~ev~~~L~~~~~ 180 (214)
T PRK06620 148 DDELIKILIFKHFSISSV---TI-SRQIIDFLLVNLP 180 (214)
T ss_pred CHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHcc
Confidence 999999999887754321 11 2444566666654
No 245
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.78 E-value=6.8e-08 Score=102.40 Aligned_cols=163 Identities=17% Similarity=0.285 Sum_probs=97.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEecCccccccccchH-HHHHHHHHHhhcCCCEEEEEcchhhccccc
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTS-AALAQAFNTAQSYSPTILLLRDFDVFRNLV 472 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~el-----g~~~~~I~~~~L~~~~~g~~e-~~L~~~f~~A~~~~P~IL~IDEID~L~~~~ 472 (934)
.+.||||+|+|||.|++++++++ +..++.+++.++......... ..+.+..+..+ ..-+++||+++.+..+
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK- 112 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH-
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc-
Confidence 48999999999999999999885 566888887665543221111 11222222222 3579999999988642
Q ss_pred cCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCC---CChhhhcccce--E
Q 002337 473 SNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG---LPPTIRRCFSH--E 547 (934)
Q Consensus 473 ~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~---Ld~aLrrrF~~--e 547 (934)
.....++..+++.+.+ .++-+|+++...|.. +++.+++||.. .
T Consensus 113 ---------~~~q~~lf~l~n~~~~-----------------------~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~ 160 (219)
T PF00308_consen 113 ---------QRTQEELFHLFNRLIE-----------------------SGKQLILTSDRPPSELSGLLPDLRSRLSWGLV 160 (219)
T ss_dssp ---------HHHHHHHHHHHHHHHH-----------------------TTSEEEEEESS-TTTTTTS-HHHHHHHHCSEE
T ss_pred ---------hHHHHHHHHHHHHHHh-----------------------hCCeEEEEeCCCCccccccChhhhhhHhhcch
Confidence 1234455666655432 344556666555554 57889998766 7
Q ss_pred EEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHH
Q 002337 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALV 601 (934)
Q Consensus 548 I~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~ 601 (934)
+.+.+|+.+.|.+|++..+..... .. .++.++-++.+..+ ..+.|..++
T Consensus 161 ~~l~~pd~~~r~~il~~~a~~~~~---~l-~~~v~~~l~~~~~~-~~r~L~~~l 209 (219)
T PF00308_consen 161 VELQPPDDEDRRRILQKKAKERGI---EL-PEEVIEYLARRFRR-DVRELEGAL 209 (219)
T ss_dssp EEE----HHHHHHHHHHHHHHTT-----S--HHHHHHHHHHTTS-SHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHHHHHHHhCC---CC-cHHHHHHHHHhhcC-CHHHHHHHH
Confidence 899999999999999998865432 22 24445556665443 334444443
No 246
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=7.6e-08 Score=115.34 Aligned_cols=159 Identities=17% Similarity=0.218 Sum_probs=102.7
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC-----------------------------cEEEecCccccccccchhhhhhHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL-----------------------------NFLSVKGPELINMYIGESEKNVRD 734 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~-----------------------------~~i~v~~~~l~~~~~Gese~~v~~ 734 (934)
+..+||+||+|+|||++|+++|+.++. .++.+++.. ...-..+|+
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iRe 111 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQ 111 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHH
Confidence 456799999999999999999988753 122222211 011234677
Q ss_pred HHHHHHhC----CCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCC
Q 002337 735 IFQKARSA----RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPG 810 (934)
Q Consensus 735 lf~~A~~~----~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpG 810 (934)
+.+.+... ...|++|||+|.+.. ...+.||..|+.. ...+.+|.+|+.+..+.+.+++
T Consensus 112 li~~~~~~p~~g~~KV~IIDEvh~Ls~-------------~a~NaLLKtLEEP---P~~~~fIL~Ttd~~kil~TIlS-- 173 (618)
T PRK14951 112 LLEQAVYKPVQGRFKVFMIDEVHMLTN-------------TAFNAMLKTLEEP---PEYLKFVLATTDPQKVPVTVLS-- 173 (618)
T ss_pred HHHHHHhCcccCCceEEEEEChhhCCH-------------HHHHHHHHhcccC---CCCeEEEEEECCchhhhHHHHH--
Confidence 77665432 236999999999852 2456777777654 2455666677778888888888
Q ss_pred CcceeeeecCCCCHHHHHHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHHHH
Q 002337 811 RFDKLLYVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADAW 870 (934)
Q Consensus 811 Rfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~A~ 870 (934)
|+ ..+.|.. .+.++....++..+++.++.-+ ..+..+++.+ +-+.+++.+++..+.
T Consensus 174 Rc-~~~~f~~-Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s--~GslR~al~lLdq~i 230 (618)
T PRK14951 174 RC-LQFNLRP-MAPETVLEHLTQVLAAENVPAEPQALRLLARAA--RGSMRDALSLTDQAI 230 (618)
T ss_pred hc-eeeecCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 77 5677763 5667777777776665544322 2356777763 346667666665443
No 247
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=1.3e-07 Score=111.91 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=100.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC------------------------cEEEEecCccccccccchHHHHHHHHHH
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGI------------------------HVVEYSCHNLMASSERKTSAALAQAFNT 451 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~------------------------~~~~I~~~~L~~~~~g~~e~~L~~~f~~ 451 (934)
.+..+||+||+|+||||+|+++|+.+.. .+++++... ......++++.+.
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas------~~gvd~ir~ii~~ 110 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAAS------RTGVEETKEILDN 110 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccc------ccCHHHHHHHHHH
Confidence 3445899999999999999999998853 222232211 1112234444444
Q ss_pred hhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEE
Q 002337 452 AQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLV 527 (934)
Q Consensus 452 A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVI 527 (934)
+.. ....|++|||+|.+.. .....|..+++. ....+.+|
T Consensus 111 ~~~~p~~g~~kViIIDEa~~ls~----------------~a~naLLK~LEe---------------------pp~~v~fI 153 (546)
T PRK14957 111 IQYMPSQGRYKVYLIDEVHMLSK----------------QSFNALLKTLEE---------------------PPEYVKFI 153 (546)
T ss_pred HHhhhhcCCcEEEEEechhhccH----------------HHHHHHHHHHhc---------------------CCCCceEE
Confidence 431 2346999999997754 112223333321 14567777
Q ss_pred EecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHH
Q 002337 528 AAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 528 atTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A 604 (934)
.+|+.+..+.+.+++|+ ..+.+..++.++....++..++.... .. .+..+..++..+. -..+++..++..+
T Consensus 154 L~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi---~~-e~~Al~~Ia~~s~-GdlR~alnlLek~ 224 (546)
T PRK14957 154 LATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENI---NS-DEQSLEYIAYHAK-GSLRDALSLLDQA 224 (546)
T ss_pred EEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 77788888998899988 49999999999988888876654321 11 2445666666654 3445555555443
No 248
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=1.1e-07 Score=112.72 Aligned_cols=159 Identities=13% Similarity=0.233 Sum_probs=102.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC------------------------cEEEEecCccccccccchHHHHHHHHHH
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGI------------------------HVVEYSCHNLMASSERKTSAALAQAFNT 451 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~------------------------~~~~I~~~~L~~~~~g~~e~~L~~~f~~ 451 (934)
.+.++|++||+|+||||+|+++|+.+.. +++++++.+ ......++.+...
T Consensus 37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~ 110 (605)
T PRK05896 37 LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDN 110 (605)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHH
Confidence 3456899999999999999999999842 222222211 1233446666555
Q ss_pred hhcC----CCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEE
Q 002337 452 AQSY----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLV 527 (934)
Q Consensus 452 A~~~----~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVI 527 (934)
+... ...|++|||+|.+.. .....|..+++. ....+++|
T Consensus 111 ~~~~P~~~~~KVIIIDEad~Lt~----------------~A~NaLLKtLEE---------------------Pp~~tvfI 153 (605)
T PRK05896 111 INYLPTTFKYKVYIIDEAHMLST----------------SAWNALLKTLEE---------------------PPKHVVFI 153 (605)
T ss_pred HHhchhhCCcEEEEEechHhCCH----------------HHHHHHHHHHHh---------------------CCCcEEEE
Confidence 4421 235999999997753 112223333321 14567788
Q ss_pred EecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHH
Q 002337 528 AAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVAD 603 (934)
Q Consensus 528 atTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~ 603 (934)
.+|+.+..+.+.+++|+. .+.+.+|+..+....++..+..... ..+ ...+..++..+.| ..++...++..
T Consensus 154 L~Tt~~~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~kegi---~Is-~eal~~La~lS~G-dlR~AlnlLek 223 (605)
T PRK05896 154 FATTEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIAKKEKI---KIE-DNAIDKIADLADG-SLRDGLSILDQ 223 (605)
T ss_pred EECCChHhhhHHHHhhhh-hcccCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 888889999999999985 8999999999999888877654321 122 3445667766655 44454444443
No 249
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.78 E-value=4.6e-08 Score=101.10 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=85.1
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCc------------------------EEEecCccccccccchhhhhhHHHHHH
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLN------------------------FLSVKGPELINMYIGESEKNVRDIFQK 738 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~------------------------~i~v~~~~l~~~~~Gese~~v~~lf~~ 738 (934)
.+..+|||||+|+|||++|+++++.+... +..+... .... .-..++++.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~~--~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQSI--KVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCcC--CHHHHHHHHHH
Confidence 35679999999999999999999886321 1211110 0001 12456666666
Q ss_pred HHh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcce
Q 002337 739 ARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDK 814 (934)
Q Consensus 739 A~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~ 814 (934)
+.. ....|++|||+|.+.. ...+.||..|+... ....+|.+||.++.+.+++++ |+ .
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~-------------~~~~~Ll~~le~~~---~~~~~il~~~~~~~l~~~i~s--r~-~ 148 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE-------------AAANALLKTLEEPP---PNTLFILITPSPEKLLPTIRS--RC-Q 148 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH-------------HHHHHHHHHhcCCC---CCeEEEEEECChHhChHHHHh--hc-E
Confidence 653 3456999999998852 24566777776642 345556667777999999998 77 4
Q ss_pred eeeecCCCCHHHHHHHHHHH
Q 002337 815 LLYVGVNSDVSYRERVLKAL 834 (934)
Q Consensus 815 ~i~v~~Pp~~~~r~~Il~~~ 834 (934)
.+.++ |++.++..++++..
T Consensus 149 ~~~~~-~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 149 VLPFP-PLSEEALLQWLIRQ 167 (188)
T ss_pred EeeCC-CCCHHHHHHHHHHc
Confidence 77887 47777777777665
No 250
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=1.1e-07 Score=113.50 Aligned_cols=158 Identities=15% Similarity=0.198 Sum_probs=102.0
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC--------------------------cEEEecCccccccccchhhhhhHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL--------------------------NFLSVKGPELINMYIGESEKNVRDIFQ 737 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~--------------------------~~i~v~~~~l~~~~~Gese~~v~~lf~ 737 (934)
+..+||+||+|||||++|+++|+.++. +++.++++.. ..-..+|++.+
T Consensus 35 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~ 108 (584)
T PRK14952 35 NHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRD 108 (584)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHH
Confidence 345799999999999999999987653 1333332111 01233555544
Q ss_pred HHHh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcc
Q 002337 738 KARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFD 813 (934)
Q Consensus 738 ~A~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd 813 (934)
.+.. ....|++|||+|.+.. ...+.||..|+.. ...+++|.+|+.++.|.+.+++ |.
T Consensus 109 ~~~~~P~~~~~KVvIIDEah~Lt~-------------~A~NALLK~LEEp---p~~~~fIL~tte~~kll~TI~S--Rc- 169 (584)
T PRK14952 109 RAFYAPAQSRYRIFIVDEAHMVTT-------------AGFNALLKIVEEP---PEHLIFIFATTEPEKVLPTIRS--RT- 169 (584)
T ss_pred HHHhhhhcCCceEEEEECCCcCCH-------------HHHHHHHHHHhcC---CCCeEEEEEeCChHhhHHHHHH--hc-
Confidence 4432 3346999999999842 2567778777754 3467777777888899999988 74
Q ss_pred eeeeecCCCCHHHHHHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHHH
Q 002337 814 KLLYVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADA 869 (934)
Q Consensus 814 ~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~A 869 (934)
..+.|.. ...+.-.++++..+++.++.-+ ..+..+++. .|-+.+++.+++...
T Consensus 170 ~~~~F~~-l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~--s~GdlR~aln~Ldql 223 (584)
T PRK14952 170 HHYPFRL-LPPRTMRALIARICEQEGVVVDDAVYPLVIRA--GGGSPRDTLSVLDQL 223 (584)
T ss_pred eEEEeeC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHH
Confidence 5778874 6667777777777666554222 224455555 355566666666554
No 251
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.77 E-value=2.1e-07 Score=96.19 Aligned_cols=144 Identities=18% Similarity=0.246 Sum_probs=93.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEEecCccccccccchHHHHHHHHH
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEYSCHNLMASSERKTSAALAQAFN 450 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~~------------------------~~~I~~~~L~~~~~g~~e~~L~~~f~ 450 (934)
+.+..+||+||+|+|||++++.+++.+... +..+... + .......++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~--~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---G--QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---c--CcCCHHHHHHHHH
Confidence 345569999999999999999999997431 1111111 0 0122345555565
Q ss_pred Hhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEE
Q 002337 451 TAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLL 526 (934)
Q Consensus 451 ~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViV 526 (934)
.+.. ....+++|||+|.+.. .....|..+++. ......+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~----------------~~~~~Ll~~le~---------------------~~~~~~~ 129 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNE----------------AAANALLKTLEE---------------------PPPNTLF 129 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCH----------------HHHHHHHHHhcC---------------------CCCCeEE
Confidence 5543 2356999999998754 112222233321 1345566
Q ss_pred EEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC
Q 002337 527 VAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (934)
Q Consensus 527 IatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G 591 (934)
|.+|+.+..+.+++++|+. .+.+++|+.++..++++.. + .+ ...++.++..+.|
T Consensus 130 il~~~~~~~l~~~i~sr~~-~~~~~~~~~~~~~~~l~~~--g-------i~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 130 ILITPSPEKLLPTIRSRCQ-VLPFPPLSEEALLQWLIRQ--G-------IS-EEAAELLLALAGG 183 (188)
T ss_pred EEEECChHhChHHHHhhcE-EeeCCCCCHHHHHHHHHHc--C-------CC-HHHHHHHHHHcCC
Confidence 7777788899999999884 8999999999998888765 1 11 3345666666655
No 252
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=2.6e-07 Score=111.72 Aligned_cols=163 Identities=18% Similarity=0.231 Sum_probs=104.4
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEe---cC----------ccccccccc---hhhhhhHHHHHHHHh----CC
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSV---KG----------PELINMYIG---ESEKNVRDIFQKARS----AR 743 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v---~~----------~~l~~~~~G---ese~~v~~lf~~A~~----~~ 743 (934)
+..+||+||+|+|||++|+++|..+...--.. .| .+++.. -| .+...+|++.+.+.. ..
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei-daasn~~vd~IReLie~~~~~P~~g~ 118 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM-DAASNNGVDEIRELIENVKNLPTQSK 118 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE-eccccCCHHHHHHHHHHHHhchhcCC
Confidence 45679999999999999999998764321000 00 111100 11 123447888777664 34
Q ss_pred CcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCC
Q 002337 744 PCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSD 823 (934)
Q Consensus 744 p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~ 823 (934)
..|++|||+|.+.. ...+.||..|+.. ...+++|.+|+.++.|.+.+++ |+. .+.|.. ++
T Consensus 119 ~KV~IIDEa~~LT~-------------~A~NALLKtLEEP---P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~-L~ 178 (725)
T PRK07133 119 YKIYIIDEVHMLSK-------------SAFNALLKTLEEP---PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRR-IS 178 (725)
T ss_pred CEEEEEEChhhCCH-------------HHHHHHHHHhhcC---CCceEEEEEcCChhhhhHHHHh--hce-eEEccC-CC
Confidence 46999999998842 2567788777764 3456777777889999999998 884 778874 66
Q ss_pred HHHHHHHHHHHHhcCCCCcCC-CHHHHHhhCCCCCCHHHHHHHHHHH
Q 002337 824 VSYRERVLKALTRKFKLLEDV-SLYSIAKKCPPNFTGADMYALCADA 869 (934)
Q Consensus 824 ~~~r~~Il~~~~~~~~~~~~~-~l~~la~~~t~g~sgaDl~~l~~~A 869 (934)
.++...+++..+++.++.-+. .+..+|..+ +-+.+++..++..+
T Consensus 179 ~eeI~~~L~~il~kegI~id~eAl~~LA~lS--~GslR~AlslLekl 223 (725)
T PRK07133 179 EDEIVSRLEFILEKENISYEKNALKLIAKLS--SGSLRDALSIAEQV 223 (725)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 777777777766655543222 255666662 34445555555543
No 253
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.76 E-value=2e-08 Score=112.76 Aligned_cols=172 Identities=17% Similarity=0.227 Sum_probs=101.4
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCcccccc-----ccchhhh-------hhHHHHHHHHhCCCcEE
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM-----YIGESEK-------NVRDIFQKARSARPCVI 747 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~-----~~Gese~-------~v~~lf~~A~~~~p~vl 747 (934)
....|||+|++||||+++|+++-... +.+|+.|+|..+... .+|.... .-...|..| ...+|
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL 97 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTL 97 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEE
Confidence 35789999999999999999996544 469999999765322 1121110 011234444 34599
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccC--------CcCCCCCEEEEEEcCCCC-------CCChhhhCCCCc
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG--------LNDSSQDLFIIGASNRPD-------LIDPALLRPGRF 812 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg--------~~~~~~~v~vI~aTNrp~-------~lD~allrpGRf 812 (934)
|||||+.|.. .+...|+..++. ......++.+|++||..- .+.+.|.. ||
T Consensus 98 ~Ldei~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl 162 (329)
T TIGR02974 98 FLDELATASL-------------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RL 162 (329)
T ss_pred EeCChHhCCH-------------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hh
Confidence 9999999852 233444443322 112235789999998641 22334443 44
Q ss_pred ceeeeecCCCCHHHHHHHH---HHHHhc----CCCC--cCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002337 813 DKLLYVGVNSDVSYRERVL---KALTRK----FKLL--EDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 873 (934)
Q Consensus 813 d~~i~v~~Pp~~~~r~~Il---~~~~~~----~~~~--~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A 873 (934)
. .+.+.+||-.+++++|. +.++.+ +... ..++-+.+.......|.| ++|++++.+|+..+
T Consensus 163 ~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 163 A-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred c-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 3 24456678787777764 333332 2221 234433333333356665 78888888877654
No 254
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.75 E-value=7.5e-08 Score=114.14 Aligned_cols=157 Identities=19% Similarity=0.238 Sum_probs=101.7
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC------------------------cEEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL------------------------NFLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~------------------------~~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+..+||+||+|+|||++|+++|..+.. .++.+++..- . .-..+|.+.+.+
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~----i--gVd~IReIi~~~ 111 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASN----N--GVDEIRNIIDNI 111 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccc----c--CHHHHHHHHHHH
Confidence 457899999999999999999987632 2333332110 1 123467776665
Q ss_pred HhC----CCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 RSA----RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~~~----~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
... ...|++|||+|.+.. ...+.||..|+.. ...+++|.+|+.++.|.+.+++ |+. .
T Consensus 112 ~~~P~~~~~KVIIIDEad~Lt~-------------~A~NaLLKtLEEP---p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ 172 (605)
T PRK05896 112 NYLPTTFKYKVYIIDEAHMLST-------------SAWNALLKTLEEP---PKHVVFIFATTEFQKIPLTIIS--RCQ-R 172 (605)
T ss_pred HhchhhCCcEEEEEechHhCCH-------------HHHHHHHHHHHhC---CCcEEEEEECCChHhhhHHHHh--hhh-h
Confidence 432 235999999998841 2346777777754 2456777788889999999998 875 6
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHH
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
+.|.. ++.++...+++..+++.+.. .+..+..+++.+ +-+.+++.+++..
T Consensus 173 ieF~~-Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS--~GdlR~AlnlLek 223 (605)
T PRK05896 173 YNFKK-LNNSELQELLKSIAKKEKIKIEDNAIDKIADLA--DGSLRDGLSILDQ 223 (605)
T ss_pred cccCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHH
Confidence 77874 66777777777766654431 122355666663 3345555555554
No 255
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=2e-07 Score=112.15 Aligned_cols=173 Identities=15% Similarity=0.192 Sum_probs=109.7
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEE
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEY 428 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~------------------------~~~I 428 (934)
+.+.+.|...+.. -+.+..+||+||+|+||||+++++|+.++.. ++++
T Consensus 22 ~~v~~~L~~~i~~--------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ei 93 (576)
T PRK14965 22 EHVSRTLQNAIDT--------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEI 93 (576)
T ss_pred HHHHHHHHHHHHc--------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeee
Confidence 3566666665532 1344568999999999999999999998532 2233
Q ss_pred ecCccccccccchHHHHHHHHHHhhcC----CCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccc
Q 002337 429 SCHNLMASSERKTSAALAQAFNTAQSY----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (934)
Q Consensus 429 ~~~~L~~~~~g~~e~~L~~~f~~A~~~----~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~ 504 (934)
++.+ ......++++.+.+... ...|++|||+|.|.. .. ...|..+++.
T Consensus 94 d~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~---------------~a-~naLLk~LEe------ 145 (576)
T PRK14965 94 DGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST---------------NA-FNALLKTLEE------ 145 (576)
T ss_pred eccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH---------------HH-HHHHHHHHHc------
Confidence 2221 12334566666555421 235999999998764 11 2223333321
Q ss_pred cccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHH
Q 002337 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (934)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~ 584 (934)
....+++|.+|+.+..|++.+++|+. .+.+..++..+....++..++.... .. ....+..
T Consensus 146 ---------------pp~~~~fIl~t~~~~kl~~tI~SRc~-~~~f~~l~~~~i~~~L~~i~~~egi---~i-~~~al~~ 205 (576)
T PRK14965 146 ---------------PPPHVKFIFATTEPHKVPITILSRCQ-RFDFRRIPLQKIVDRLRYIADQEGI---SI-SDAALAL 205 (576)
T ss_pred ---------------CCCCeEEEEEeCChhhhhHHHHHhhh-hhhcCCCCHHHHHHHHHHHHHHhCC---CC-CHHHHHH
Confidence 14577888888899999999999885 8889999998888888776654322 12 2344666
Q ss_pred HHhhcCCCChHHHHHHHH
Q 002337 585 IIGQTSGFMPRDLHALVA 602 (934)
Q Consensus 585 la~~t~Gfv~~DL~~L~~ 602 (934)
++..+.| ..+|...++.
T Consensus 206 la~~a~G-~lr~al~~Ld 222 (576)
T PRK14965 206 VARKGDG-SMRDSLSTLD 222 (576)
T ss_pred HHHHcCC-CHHHHHHHHH
Confidence 7766665 3345444444
No 256
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=2.1e-07 Score=111.00 Aligned_cols=163 Identities=19% Similarity=0.222 Sum_probs=101.6
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEE
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEY 428 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~------------------------~~~I 428 (934)
+.+++.|...+.. + +....+||+||+|+||||+|+++|+.+... ++++
T Consensus 22 e~v~~~L~~ai~~----~----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eI 93 (624)
T PRK14959 22 ETVKAILSRAAQE----N----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEI 93 (624)
T ss_pred HHHHHHHHHHHHc----C----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEE
Confidence 3455555555431 1 223468999999999999999999998642 3333
Q ss_pred ecCccccccccchHHHHHHHHHHhh----cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccc
Q 002337 429 SCHNLMASSERKTSAALAQAFNTAQ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (934)
Q Consensus 429 ~~~~L~~~~~g~~e~~L~~~f~~A~----~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~ 504 (934)
+... ......++.+.+.+. .....|++|||+|.|.. +....|..+++.
T Consensus 94 d~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~----------------~a~naLLk~LEE------ 145 (624)
T PRK14959 94 DGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR----------------EAFNALLKTLEE------ 145 (624)
T ss_pred eccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH----------------HHHHHHHHHhhc------
Confidence 3211 112223333322222 22357999999998754 112222233321
Q ss_pred cccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHH
Q 002337 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (934)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~ 584 (934)
....+++|.+|+.+..+.+.+++|+. .+.|..++.++...+++..+..... .. ....++.
T Consensus 146 ---------------P~~~~ifILaTt~~~kll~TI~SRcq-~i~F~pLs~~eL~~~L~~il~~egi---~i-d~eal~l 205 (624)
T PRK14959 146 ---------------PPARVTFVLATTEPHKFPVTIVSRCQ-HFTFTRLSEAGLEAHLTKVLGREGV---DY-DPAAVRL 205 (624)
T ss_pred ---------------cCCCEEEEEecCChhhhhHHHHhhhh-ccccCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHH
Confidence 13567888888888899999999885 7899999999999888876643321 12 2344566
Q ss_pred HHhhcCC
Q 002337 585 IIGQTSG 591 (934)
Q Consensus 585 la~~t~G 591 (934)
++..+.|
T Consensus 206 IA~~s~G 212 (624)
T PRK14959 206 IARRAAG 212 (624)
T ss_pred HHHHcCC
Confidence 6666554
No 257
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=6.6e-08 Score=115.05 Aligned_cols=159 Identities=20% Similarity=0.253 Sum_probs=101.7
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCc------------------------EEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLN------------------------FLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~------------------------~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+..+||+||+|+|||++|+++|+.++.. ++.+++.. .-.-..+|++.+.+
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~ 111 (527)
T PRK14969 38 HHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNA 111 (527)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHH
Confidence 3467999999999999999999887542 12222110 11223467777766
Q ss_pred Hh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 RS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
.. ....|++|||+|.+. ....+.||..|+.. ...+.+|.+|+.++.+.+.+++ |+ ..
T Consensus 112 ~~~p~~~~~kVvIIDEad~ls-------------~~a~naLLK~LEep---p~~~~fIL~t~d~~kil~tI~S--Rc-~~ 172 (527)
T PRK14969 112 QYAPTRGRFKVYIIDEVHMLS-------------KSAFNAMLKTLEEP---PEHVKFILATTDPQKIPVTVLS--RC-LQ 172 (527)
T ss_pred hhCcccCCceEEEEcCcccCC-------------HHHHHHHHHHHhCC---CCCEEEEEEeCChhhCchhHHH--HH-HH
Confidence 43 234699999999884 23456777777764 2456666677778888878887 76 56
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHHHH
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADAW 870 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~A~ 870 (934)
+.|.. ++.++-...++..+++.++..+ ..+..+++. .+-+.+++.+++..|.
T Consensus 173 ~~f~~-l~~~~i~~~L~~il~~egi~~~~~al~~la~~--s~Gslr~al~lldqai 225 (527)
T PRK14969 173 FNLKQ-MPPPLIVSHLQHILEQENIPFDATALQLLARA--AAGSMRDALSLLDQAI 225 (527)
T ss_pred HhcCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 77774 6666666666666554443322 224566666 2455666667765543
No 258
>PRK05642 DNA replication initiation factor; Validated
Probab=98.73 E-value=2.3e-07 Score=99.47 Aligned_cols=147 Identities=16% Similarity=0.255 Sum_probs=95.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccC
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSN 474 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~ 474 (934)
.+++|+||+|+|||.|++++++++ +..++.++..+++.. ...+.+.... .-+++||+++.+....
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCCh--
Confidence 468999999999999999999865 567777877665542 1122232322 2478999999775411
Q ss_pred CCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCC---CChhhhcccc--eEEE
Q 002337 475 ESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG---LPPTIRRCFS--HEIS 549 (934)
Q Consensus 475 ~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~---Ld~aLrrrF~--~eI~ 549 (934)
....++..+++.+.+ .+..++++++..|.. ..+++++||. ..+.
T Consensus 114 --------~~~~~Lf~l~n~~~~-----------------------~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~ 162 (234)
T PRK05642 114 --------DWEEALFHLFNRLRD-----------------------SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQ 162 (234)
T ss_pred --------HHHHHHHHHHHHHHh-----------------------cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeee
Confidence 123445555555432 455677877766644 3688999984 4678
Q ss_pred cCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC
Q 002337 550 MGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (934)
Q Consensus 550 i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G 591 (934)
+.+|+.++|.++++....... + .++ ++.++.++.+..+
T Consensus 163 l~~~~~e~~~~il~~ka~~~~-~--~l~-~ev~~~L~~~~~~ 200 (234)
T PRK05642 163 MRGLSDEDKLRALQLRASRRG-L--HLT-DEVGHFILTRGTR 200 (234)
T ss_pred cCCCCHHHHHHHHHHHHHHcC-C--CCC-HHHHHHHHHhcCC
Confidence 899999999999996554321 1 222 3445556655543
No 259
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.73 E-value=3.5e-08 Score=121.17 Aligned_cols=148 Identities=20% Similarity=0.326 Sum_probs=98.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCc------ccccc-ccc--hHHHH-HHHHHHhhcCCCEEEEEcc
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHN------LMASS-ERK--TSAAL-AQAFNTAQSYSPTILLLRD 464 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~------L~~~~-~g~--~e~~L-~~~f~~A~~~~P~IL~IDE 464 (934)
..++++||-|.||+|||+|+.++|++.|..++.||.++ +++.. +++ .+-.+ ..-|-.|.+ .+.++++||
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDE 1619 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDE 1619 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeeh
Confidence 45567999999999999999999999999999999874 33332 222 22233 334555654 578999999
Q ss_pred hhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCC------CCCCh
Q 002337 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS------EGLPP 538 (934)
Q Consensus 465 ID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~------~~Ld~ 538 (934)
+.. +. ..|..-|+.+++.. ...|..+.+.....+.+..|.||-|.- .+||.
T Consensus 1620 iNL-aS---------------QSVlEGLNacLDhR-------~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPk 1676 (4600)
T COG5271 1620 INL-AS---------------QSVLEGLNACLDHR-------REAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPK 1676 (4600)
T ss_pred hhh-hH---------------HHHHHHHHHHHhhc-------cccccccccceeeccCCeeeeeecCchhcCCCcccCCH
Confidence 973 32 23444444444321 111222222223346667777777653 34999
Q ss_pred hhhcccceEEEcCCCCHHHHHHHHHHhcc
Q 002337 539 TIRRCFSHEISMGPLTEQQRVEMLSQLLQ 567 (934)
Q Consensus 539 aLrrrF~~eI~i~~Pde~~R~~IL~~ll~ 567 (934)
.+..||. .+.+...+......|+..+..
T Consensus 1677 SF~nRFs-vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1677 SFLNRFS-VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred HHhhhhh-eEEecccccchHHHHHHhhCC
Confidence 9999997 788888888888888887653
No 260
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.73 E-value=4e-07 Score=110.04 Aligned_cols=179 Identities=18% Similarity=0.284 Sum_probs=109.2
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEE---EecC----------cccc-c-c
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE---YSCH----------NLMA-S-S 437 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~---I~~~----------~L~~-~-~ 437 (934)
+.+++.|...+.. -+.+..+||+||+|+|||++|+++|+.+...-.. -.|. ++.. . .
T Consensus 24 e~~v~~L~~aI~~--------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaa 95 (725)
T PRK07133 24 DHIVQTLKNIIKS--------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAA 95 (725)
T ss_pred HHHHHHHHHHHHc--------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecc
Confidence 4556666665532 1334568999999999999999999998542110 0110 1110 0 0
Q ss_pred ccchHHHHHHHHHHhhcC----CCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCch
Q 002337 438 ERKTSAALAQAFNTAQSY----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPV 513 (934)
Q Consensus 438 ~g~~e~~L~~~f~~A~~~----~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~ 513 (934)
.......++++.+.+... ...|++|||+|.|.. .....+| ..++.
T Consensus 96 sn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~---------------~A~NALL-KtLEE--------------- 144 (725)
T PRK07133 96 SNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK---------------SAFNALL-KTLEE--------------- 144 (725)
T ss_pred ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------HHHHHHH-HHhhc---------------
Confidence 112244567766665532 346999999998754 1222233 33321
Q ss_pred hhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCC
Q 002337 514 KEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFM 593 (934)
Q Consensus 514 ~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv 593 (934)
....+++|.+|+.++.|++.+++|+. .+.+.+++.++....++..+..... ..+ ...+..++..+.| .
T Consensus 145 ------PP~~tifILaTte~~KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~il~kegI---~id-~eAl~~LA~lS~G-s 212 (725)
T PRK07133 145 ------PPKHVIFILATTEVHKIPLTILSRVQ-RFNFRRISEDEIVSRLEFILEKENI---SYE-KNALKLIAKLSSG-S 212 (725)
T ss_pred ------CCCceEEEEEcCChhhhhHHHHhhce-eEEccCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC-C
Confidence 15567888888899999999999985 8999999999999888876644322 111 2335556665554 3
Q ss_pred hHHHHHHHH
Q 002337 594 PRDLHALVA 602 (934)
Q Consensus 594 ~~DL~~L~~ 602 (934)
.+++..++.
T Consensus 213 lR~AlslLe 221 (725)
T PRK07133 213 LRDALSIAE 221 (725)
T ss_pred HHHHHHHHH
Confidence 344444443
No 261
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.71 E-value=3.7e-07 Score=99.34 Aligned_cols=47 Identities=30% Similarity=0.447 Sum_probs=39.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC--CcEEEEecCccccccccchH
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLG--IHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg--~~~~~I~~~~L~~~~~g~~e 442 (934)
.+++||+.||||||||.||-++|++|| .+|..++++++++.....++
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE 112 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTE 112 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHH
Confidence 578999999999999999999999997 68999999987765444443
No 262
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.71 E-value=1.4e-07 Score=109.90 Aligned_cols=182 Identities=18% Similarity=0.272 Sum_probs=123.0
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcE-------EE-EecCccccc--------
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHV-------VE-YSCHNLMAS-------- 436 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~-------~~-I~~~~L~~~-------- 436 (934)
+.+++.|...+..-. ...+.|+.||.||||||++|.+|+.++..- .. ..|.++...
T Consensus 22 e~v~~~L~nal~~~r--------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEi 93 (515)
T COG2812 22 EHVVKTLSNALENGR--------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEI 93 (515)
T ss_pred HHHHHHHHHHHHhCc--------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhh
Confidence 456777777664332 233469999999999999999999986531 11 112222211
Q ss_pred --cccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCC
Q 002337 437 --SERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGY 510 (934)
Q Consensus 437 --~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~ 510 (934)
........+|++.+.+.. ...-|++|||+|.|.. ..+..+|+.+-++
T Consensus 94 DaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~---------------~afNALLKTLEEP------------ 146 (515)
T COG2812 94 DAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK---------------QAFNALLKTLEEP------------ 146 (515)
T ss_pred hhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH---------------HHHHHHhcccccC------------
Confidence 112345677777777652 1245999999998865 2345555554332
Q ss_pred CchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcC
Q 002337 511 FPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTS 590 (934)
Q Consensus 511 ~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~ 590 (934)
...|++|.+|+.+..+|+.+++|+. .+.+...+.++....|...+.+...- . .+..|.-+++..+
T Consensus 147 ----------P~hV~FIlATTe~~Kip~TIlSRcq-~f~fkri~~~~I~~~L~~i~~~E~I~---~-e~~aL~~ia~~a~ 211 (515)
T COG2812 147 ----------PSHVKFILATTEPQKIPNTILSRCQ-RFDFKRLDLEEIAKHLAAILDKEGIN---I-EEDALSLIARAAE 211 (515)
T ss_pred ----------ccCeEEEEecCCcCcCchhhhhccc-cccccCCCHHHHHHHHHHHHHhcCCc---c-CHHHHHHHHHHcC
Confidence 6789999999999999999999985 78888888998888888877654331 1 1344566666665
Q ss_pred CCChHHHHHHHHHHH
Q 002337 591 GFMPRDLHALVADAG 605 (934)
Q Consensus 591 Gfv~~DL~~L~~~A~ 605 (934)
| +.+|...|...+.
T Consensus 212 G-s~RDalslLDq~i 225 (515)
T COG2812 212 G-SLRDALSLLDQAI 225 (515)
T ss_pred C-ChhhHHHHHHHHH
Confidence 5 4577777777664
No 263
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.71 E-value=1e-08 Score=119.08 Aligned_cols=310 Identities=18% Similarity=0.219 Sum_probs=150.7
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcE----EEE--ecCccccccccchHHHHHHHHHHhhcCCCEEEEEcch
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHV----VEY--SCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDF 465 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~----~~I--~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEI 465 (934)
|.+.++..+.|+|.+||||||+++++-+.+.... ++| ++.++.+ .++... ...+...-+++|-|-.
T Consensus 30 f~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~----l~~~~~----r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 30 FEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG----LSEREM----RKLRGKRIAMIFQDPM 101 (539)
T ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhc----CCHHHH----HHhccccEEEEecCch
Confidence 3344555599999999999999999999886553 222 2222221 122222 3333445688888888
Q ss_pred hhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhh-ccc
Q 002337 466 DVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIR-RCF 544 (934)
Q Consensus 466 D~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLr-rrF 544 (934)
.+|.|.. .....+.+.+..-.. .. ..+ ......... ..-+|++..+ ++|
T Consensus 102 ~slnP~~----------tIg~Qi~E~~~~h~~-~~--~~e------a~~~a~elL-----------~~Vgl~~~~~~~~y 151 (539)
T COG1123 102 TSLNPVM----------TIGDQIREALRLHGK-GS--RAE------ARKRAVELL-----------EQVGLPDPERRDRY 151 (539)
T ss_pred hhcCchh----------hHHHHHHHHHHHhcc-cc--HHH------HHHHHHHHH-----------HHcCCCChhhhccC
Confidence 8776622 111222222211100 00 000 000000000 1113454444 589
Q ss_pred ceEEEcCCCCHHHHHHHHHHhccccccccCCCCc-----------hHHHHHHHhhcCC---CChHHHHHHHHHHHHHHHH
Q 002337 545 SHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-----------EEFVKDIIGQTSG---FMPRDLHALVADAGANLIR 610 (934)
Q Consensus 545 ~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~-----------~~~L~~la~~t~G---fv~~DL~~L~~~A~~~ai~ 610 (934)
.|+++.| +.||..|...+..++..+..|... -..++++.+.+.- |+.||+.-+.+-|-...+.
T Consensus 152 PheLSGG---~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm 228 (539)
T COG1123 152 PHQLSGG---MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVM 228 (539)
T ss_pred CcccCch---HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEE
Confidence 9999999 999999999999888877555432 1223334333322 8899988766543211110
Q ss_pred hhcccccCCCC------CchhhhhhhhccCcchhh-------------hhhcCCHHHHHHHHHhhhccccc--ccC-CCC
Q 002337 611 KSNSEVDKNEP------GESDLTAKVAHNDNSSIA-------------ATQVMGKEDLVKAMERSKKRNAS--ALG-APK 668 (934)
Q Consensus 611 r~~~~~~~~~~------~~~~l~~~~~~~~~~~~~-------------~~~~i~~ed~~~aL~~~k~~~~~--~i~-~pk 668 (934)
..-...+.-.. ..+.....+......... ....+..++ +.+.+.. .+. ...
T Consensus 229 ~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~-------l~k~y~~~~~~~~~~~ 301 (539)
T COG1123 229 YKGEIVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRN-------LSKRYGSRKGLFVRER 301 (539)
T ss_pred ECCEEEEecCHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeee-------eeeeeccccccccccc
Confidence 00000000000 000000000000000000 000000111 1111110 000 000
Q ss_pred CccchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHcCC--cEEEecCccccccccchhhhhhHHHHHHHHhCCCcE
Q 002337 669 LPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSL--NFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746 (934)
Q Consensus 669 ~pl~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~--~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~v 746 (934)
-+...-+-+++.+.++..+-|.|++||||||++|+++..... -.+.+++.+ ..... ...+.. ....-+
T Consensus 302 ~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~~~----~~~~~~-----r~~~Qm 371 (539)
T COG1123 302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDLTG----GELRRL-----RRRIQM 371 (539)
T ss_pred cceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-ccccc----chhhhh-----hhheEE
Confidence 122223334567788999999999999999999999986632 345555555 22221 111121 112348
Q ss_pred EEeccccccccCC
Q 002337 747 IFFDELDSLAPAR 759 (934)
Q Consensus 747 lfiDEid~l~~~r 759 (934)
+|-|-..+|.|+.
T Consensus 372 vFQdp~~SLnPr~ 384 (539)
T COG1123 372 VFQDPYSSLNPRM 384 (539)
T ss_pred EEeCcccccCccc
Confidence 9999988887753
No 264
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.71 E-value=6.6e-07 Score=97.41 Aligned_cols=48 Identities=38% Similarity=0.715 Sum_probs=41.1
Q ss_pred hcCCCCCCcceecCCCCCcchHHHHHHHHHcC--CcEEEecCcccccccc
Q 002337 678 SSGLRKRSGVLLYGPPGTGKTLLAKAVATECS--LNFLSVKGPELINMYI 725 (934)
Q Consensus 678 ~~~~~~~~~iLl~GppGtGKT~lakalA~~~~--~~~i~v~~~~l~~~~~ 725 (934)
..+...++++|+.||||||||.+|-++|+++| .||..++++++++.-+
T Consensus 59 k~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~ 108 (450)
T COG1224 59 KQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEV 108 (450)
T ss_pred HhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecc
Confidence 34555689999999999999999999999996 6899999999877533
No 265
>PRK09087 hypothetical protein; Validated
Probab=98.70 E-value=2e-07 Score=99.26 Aligned_cols=170 Identities=18% Similarity=0.200 Sum_probs=101.3
Q ss_pred CcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCC
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGD 764 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~ 764 (934)
..++|+||+|+|||+|+++++...+..++.. .++.. +++..... .+|+|||++.+.. +
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~------~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-----------DAANAAAE---GPVLIEDIDAGGF------D 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-----------HHHHhhhc---CeEEEECCCCCCC------C
Confidence 3489999999999999999998766554333 22211 12222222 3788999997631 1
Q ss_pred CchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC---CCChhhhCCCCcceeeeecC-CCCHHHHHHHHHHHHhcCCC
Q 002337 765 SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD---LIDPALLRPGRFDKLLYVGV-NSDVSYRERVLKALTRKFKL 840 (934)
Q Consensus 765 ~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~---~lD~allrpGRfd~~i~v~~-Pp~~~~r~~Il~~~~~~~~~ 840 (934)
+ ...-.+++.+. + .+..+||+++..|. ...|.|++ ||...+.+.+ ||+.+.|..|++...+...+
T Consensus 103 ~-~~lf~l~n~~~-------~-~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~ 171 (226)
T PRK09087 103 E-TGLFHLINSVR-------Q-AGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQL 171 (226)
T ss_pred H-HHHHHHHHHHH-------h-CCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 1 11222333322 2 23456666665554 23688888 9975544444 68999999999988876544
Q ss_pred Cc-CCCHHHHHhhCCCCCCHHHHHHHHH---HHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhh
Q 002337 841 LE-DVSLYSIAKKCPPNFTGADMYALCA---DAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLREL 910 (934)
Q Consensus 841 ~~-~~~l~~la~~~t~g~sgaDl~~l~~---~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~ 910 (934)
.- +.-+..|++++ .++++.+.. .-...+.. ....||...++++++.+
T Consensus 172 ~l~~ev~~~La~~~-----~r~~~~l~~~l~~L~~~~~~------------------~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 172 YVDPHVVYYLVSRM-----ERSLFAAQTIVDRLDRLALE------------------RKSRITRALAAEVLNEM 222 (226)
T ss_pred CCCHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHH------------------hCCCCCHHHHHHHHHhh
Confidence 22 22367788774 256665543 22111111 12357888888888754
No 266
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=5.2e-07 Score=106.25 Aligned_cols=181 Identities=15% Similarity=0.229 Sum_probs=106.3
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc-------EEE-EecCcccc---------
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH-------VVE-YSCHNLMA--------- 435 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~-------~~~-I~~~~L~~--------- 435 (934)
+.+++.|...+.. + +.+..+||+||+|+||||+++++|+.++.. +.. .+|..+.+
T Consensus 22 ~~i~~~L~~~i~~----~----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 22 EIVVRILKNAVKL----Q----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred HHHHHHHHHHHHc----C----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 3455665555532 1 233457999999999999999999998631 110 11111100
Q ss_pred -ccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCC
Q 002337 436 -SSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGY 510 (934)
Q Consensus 436 -~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~ 510 (934)
.........++.+.+.+.. ....|++|||+|.+.. .....++ .+++.
T Consensus 94 daas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~---------------~a~naLL-k~LEe------------ 145 (486)
T PRK14953 94 DAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK---------------EAFNALL-KTLEE------------ 145 (486)
T ss_pred eCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH---------------HHHHHHH-HHHhc------------
Confidence 0011223334555444432 2347999999997753 1122222 33221
Q ss_pred CchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcC
Q 002337 511 FPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTS 590 (934)
Q Consensus 511 ~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~ 590 (934)
....+++|.+|+.++.+++++++|+. .+.+.+|+..+...+++..++.... ..+ ...+..++..+.
T Consensus 146 ---------pp~~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi---~id-~~al~~La~~s~ 211 (486)
T PRK14953 146 ---------PPPRTIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKI---EYE-EKALDLLAQASE 211 (486)
T ss_pred ---------CCCCeEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcC
Confidence 13445666667778889999998885 7999999999999999988765432 222 334566666555
Q ss_pred CCChHHHHHHHHHH
Q 002337 591 GFMPRDLHALVADA 604 (934)
Q Consensus 591 Gfv~~DL~~L~~~A 604 (934)
| ..+++..+++.+
T Consensus 212 G-~lr~al~~Ldkl 224 (486)
T PRK14953 212 G-GMRDAASLLDQA 224 (486)
T ss_pred C-CHHHHHHHHHHH
Confidence 3 345555555444
No 267
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=5.8e-07 Score=107.98 Aligned_cols=182 Identities=16% Similarity=0.254 Sum_probs=112.9
Q ss_pred chHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEE-------------ecCccccc--
Q 002337 372 QGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY-------------SCHNLMAS-- 436 (934)
Q Consensus 372 ~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I-------------~~~~L~~~-- 436 (934)
++..++.|...+.. -+.+.++||+||+|+||||+++++|+.++...... +|..+...
T Consensus 29 q~~~v~~L~~~~~~--------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h 100 (598)
T PRK09111 29 QEAMVRTLTNAFET--------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRH 100 (598)
T ss_pred cHHHHHHHHHHHHc--------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCC
Confidence 34566666665532 13456799999999999999999999986432111 11111110
Q ss_pred --------cccchHHHHHHHHHHhhcC----CCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccc
Q 002337 437 --------SERKTSAALAQAFNTAQSY----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (934)
Q Consensus 437 --------~~g~~e~~L~~~f~~A~~~----~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~ 504 (934)
........++++++.+... ...|++|||+|.+.. .....++ ..++.
T Consensus 101 ~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~---------------~a~naLL-KtLEe------ 158 (598)
T PRK09111 101 VDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST---------------AAFNALL-KTLEE------ 158 (598)
T ss_pred CceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH---------------HHHHHHH-HHHHh------
Confidence 0112345667777666522 246999999998753 1222223 22221
Q ss_pred cccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHH
Q 002337 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKD 584 (934)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~ 584 (934)
....+.+|.+|+.+..+.+.+++|+. .+.+..++.++....++..++.... ..+ ...++.
T Consensus 159 ---------------Pp~~~~fIl~tte~~kll~tI~SRcq-~~~f~~l~~~el~~~L~~i~~kegi---~i~-~eAl~l 218 (598)
T PRK09111 159 ---------------PPPHVKFIFATTEIRKVPVTVLSRCQ-RFDLRRIEADVLAAHLSRIAAKEGV---EVE-DEALAL 218 (598)
T ss_pred ---------------CCCCeEEEEEeCChhhhhHHHHhhee-EEEecCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHH
Confidence 14557777778888889999999884 8999999999999888887754322 122 344566
Q ss_pred HHhhcCCCChHHHHHHHHHH
Q 002337 585 IIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 585 la~~t~Gfv~~DL~~L~~~A 604 (934)
++..+.| ..+++..++..+
T Consensus 219 Ia~~a~G-dlr~al~~Ldkl 237 (598)
T PRK09111 219 IARAAEG-SVRDGLSLLDQA 237 (598)
T ss_pred HHHHcCC-CHHHHHHHHHHH
Confidence 6666554 455555555443
No 268
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.69 E-value=1.7e-07 Score=109.47 Aligned_cols=170 Identities=15% Similarity=0.218 Sum_probs=106.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEecCccccccccchH---HHHHHHHHHhhcCCCEEEEEcchhhcc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTS---AALAQAFNTAQSYSPTILLLRDFDVFR 469 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el-----g~~~~~I~~~~L~~~~~g~~e---~~L~~~f~~A~~~~P~IL~IDEID~L~ 469 (934)
.+++|||++|+|||+|++++++++ +..++.+++.++......... ..+....+.. ...-+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 459999999999999999999965 467788888776554322111 1222222222 245699999999775
Q ss_pred ccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC---CCChhhhcccce
Q 002337 470 NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE---GLPPTIRRCFSH 546 (934)
Q Consensus 470 ~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~---~Ld~aLrrrF~~ 546 (934)
.+. ....++..+++.+.+ .+.-+|+++...|. .+++.+++||..
T Consensus 220 ~k~----------~~~e~lf~l~N~~~~-----------------------~~k~iIltsd~~P~~l~~l~~rL~SR~~~ 266 (450)
T PRK14087 220 YKE----------KTNEIFFTIFNNFIE-----------------------NDKQLFFSSDKSPELLNGFDNRLITRFNM 266 (450)
T ss_pred CCH----------HHHHHHHHHHHHHHH-----------------------cCCcEEEECCCCHHHHhhccHHHHHHHhC
Confidence 411 123455555555432 22334444443443 367899999864
Q ss_pred --EEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHH
Q 002337 547 --EISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAG 605 (934)
Q Consensus 547 --eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~ 605 (934)
.+.+.+|+.++|.+|++..++.... ... -.++.++.++....| ..+.+..++....
T Consensus 267 Gl~~~L~~pd~e~r~~iL~~~~~~~gl-~~~-l~~evl~~Ia~~~~g-d~R~L~gaL~~l~ 324 (450)
T PRK14087 267 GLSIAIQKLDNKTATAIIKKEIKNQNI-KQE-VTEEAINFISNYYSD-DVRKIKGSVSRLN 324 (450)
T ss_pred CceeccCCcCHHHHHHHHHHHHHhcCC-CCC-CCHHHHHHHHHccCC-CHHHHHHHHHHHH
Confidence 6788999999999999998865321 111 234556777776665 4455555555443
No 269
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=5.8e-07 Score=107.49 Aligned_cols=176 Identities=19% Similarity=0.206 Sum_probs=111.6
Q ss_pred chHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEE
Q 002337 372 QGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVE 427 (934)
Q Consensus 372 ~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~------------------------~~~ 427 (934)
++.+++.|...+.- -+.+..+||+||+|+||||+++++|+.++.. ++.
T Consensus 21 qe~iv~~L~~~i~~--------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~ 92 (563)
T PRK06647 21 QDFVVETLKHSIES--------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIE 92 (563)
T ss_pred cHHHHHHHHHHHHc--------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEE
Confidence 34556666665532 1234568999999999999999999998642 112
Q ss_pred EecCccccccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCcccc
Q 002337 428 YSCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDE 503 (934)
Q Consensus 428 I~~~~L~~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~ 503 (934)
+++. .......++++.+.+.. ....+++|||+|.+.. .....|...++.
T Consensus 93 idga------s~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~----------------~a~naLLK~LEe----- 145 (563)
T PRK06647 93 IDGA------SNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN----------------SAFNALLKTIEE----- 145 (563)
T ss_pred ecCc------ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH----------------HHHHHHHHhhcc-----
Confidence 2111 01223455555544331 2346999999997753 112222233321
Q ss_pred ccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHH
Q 002337 504 DEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVK 583 (934)
Q Consensus 504 ~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~ 583 (934)
....+++|.+|+.+..+.+++++|+. .+.+..++.++...+++..++.... .. ....+.
T Consensus 146 ----------------pp~~~vfI~~tte~~kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~~~egi---~i-d~eAl~ 204 (563)
T PRK06647 146 ----------------PPPYIVFIFATTEVHKLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVCLEDQI---KY-EDEALK 204 (563)
T ss_pred ----------------CCCCEEEEEecCChHHhHHHHHHhce-EEEecCCCHHHHHHHHHHHHHHcCC---CC-CHHHHH
Confidence 14567888888888999999999986 7899999999999888877654322 11 244566
Q ss_pred HHHhhcCCCChHHHHHHHHHH
Q 002337 584 DIIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 584 ~la~~t~Gfv~~DL~~L~~~A 604 (934)
.++..+.| ..+++..++..+
T Consensus 205 lLa~~s~G-dlR~alslLdkl 224 (563)
T PRK06647 205 WIAYKSTG-SVRDAYTLFDQV 224 (563)
T ss_pred HHHHHcCC-CHHHHHHHHHHH
Confidence 67766665 566666666543
No 270
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=6.2e-07 Score=105.79 Aligned_cols=177 Identities=19% Similarity=0.238 Sum_probs=111.6
Q ss_pred chHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCC------------------------cEEE
Q 002337 372 QGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGI------------------------HVVE 427 (934)
Q Consensus 372 ~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~------------------------~~~~ 427 (934)
++.+++.|...+.. -+.+..+||+||+|+|||++++++|+.+.. .+++
T Consensus 19 qe~v~~~L~~~I~~--------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 19 QESVSKTLSLALDN--------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred cHHHHHHHHHHHHc--------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 34556666665531 134455799999999999999999999832 1222
Q ss_pred EecCccccccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCcccc
Q 002337 428 YSCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDE 503 (934)
Q Consensus 428 I~~~~L~~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~ 503 (934)
++..+ ......+++..+.+.. ...-|++|||+|.+.. +....|...++.
T Consensus 91 ldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~----------------~A~NALLK~LEE----- 143 (535)
T PRK08451 91 MDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK----------------EAFNALLKTLEE----- 143 (535)
T ss_pred ecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH----------------HHHHHHHHHHhh-----
Confidence 22110 1123456666554331 1235999999997754 222233333321
Q ss_pred ccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHH
Q 002337 504 DEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVK 583 (934)
Q Consensus 504 ~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~ 583 (934)
....+.+|.+|+.+..|.+.+++|. ..+.+.+++.++....++..++.... .. ....+.
T Consensus 144 ----------------pp~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i-~~~Al~ 202 (535)
T PRK08451 144 ----------------PPSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGV---SY-EPEALE 202 (535)
T ss_pred ----------------cCCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHH
Confidence 1445667777788899999999996 48999999999988888877754322 11 234566
Q ss_pred HHHhhcCCCChHHHHHHHHHHH
Q 002337 584 DIIGQTSGFMPRDLHALVADAG 605 (934)
Q Consensus 584 ~la~~t~Gfv~~DL~~L~~~A~ 605 (934)
.++....| ..+++..++..+.
T Consensus 203 ~Ia~~s~G-dlR~alnlLdqai 223 (535)
T PRK08451 203 ILARSGNG-SLRDTLTLLDQAI 223 (535)
T ss_pred HHHHHcCC-cHHHHHHHHHHHH
Confidence 67766555 6667777766543
No 271
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.69 E-value=3.4e-07 Score=102.30 Aligned_cols=145 Identities=18% Similarity=0.256 Sum_probs=92.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhC-----CcEEEEecCccccccccchHHHHHHHHH-Hhhc-----CCCEEEEEcchhh
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLG-----IHVVEYSCHNLMASSERKTSAALAQAFN-TAQS-----YSPTILLLRDFDV 467 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg-----~~~~~I~~~~L~~~~~g~~e~~L~~~f~-~A~~-----~~P~IL~IDEID~ 467 (934)
+++|+||||||||++++++++++. ..++.+++.+-. ....++..+. .+.. ..+.+++|||+|.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~ 113 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADN 113 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCccc
Confidence 589999999999999999999973 234555544311 1112222221 1211 2356999999997
Q ss_pred ccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceE
Q 002337 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHE 547 (934)
Q Consensus 468 L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~e 547 (934)
+.. +....|.++++.. .....+|.++|.+..+.+.+++|+. .
T Consensus 114 l~~----------------~~~~~L~~~le~~---------------------~~~~~lIl~~~~~~~l~~~l~sr~~-~ 155 (319)
T PRK00440 114 LTS----------------DAQQALRRTMEMY---------------------SQNTRFILSCNYSSKIIDPIQSRCA-V 155 (319)
T ss_pred CCH----------------HHHHHHHHHHhcC---------------------CCCCeEEEEeCCccccchhHHHHhh-e
Confidence 753 1122333443321 2234556677777788888888876 6
Q ss_pred EEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC
Q 002337 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (934)
Q Consensus 548 I~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G 591 (934)
+.+++++.++...+++..++.... .. ....++.++..+.|
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~---~i-~~~al~~l~~~~~g 195 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGI---EI-TDDALEAIYYVSEG 195 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHcCC
Confidence 899999999999999988765432 22 24457777776654
No 272
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.69 E-value=5e-07 Score=98.59 Aligned_cols=190 Identities=15% Similarity=0.212 Sum_probs=110.5
Q ss_pred cceecCCCCCcchHHHHHHHHHcCC-cEEE--e-cC----ccccc---cccchh-----h-hhhHHHH----HHHHhCCC
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECSL-NFLS--V-KG----PELIN---MYIGES-----E-KNVRDIF----QKARSARP 744 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~~-~~i~--v-~~----~~l~~---~~~Ges-----e-~~v~~lf----~~A~~~~p 744 (934)
.++++||+|+|||++++.++..... .+.. + +. .+++. ...|.. . ...+.+. .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999999988752 2221 1 11 11110 111211 1 1112222 22335677
Q ss_pred cEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC---CC-C---hhhhCCCCcceeee
Q 002337 745 CVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD---LI-D---PALLRPGRFDKLLY 817 (934)
Q Consensus 745 ~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~---~l-D---~allrpGRfd~~i~ 817 (934)
.+|+|||++.+... ....+..+..... .....+.|+ .+..|+ .+ + ..+.+ |+...+.
T Consensus 125 ~vliiDe~~~l~~~----------~~~~l~~l~~~~~---~~~~~~~vv-l~g~~~~~~~l~~~~~~~l~~--r~~~~~~ 188 (269)
T TIGR03015 125 ALLVVDEAQNLTPE----------LLEELRMLSNFQT---DNAKLLQIF-LVGQPEFRETLQSPQLQQLRQ--RIIASCH 188 (269)
T ss_pred eEEEEECcccCCHH----------HHHHHHHHhCccc---CCCCeEEEE-EcCCHHHHHHHcCchhHHHHh--heeeeee
Confidence 89999999987421 1122233322211 112223222 333333 11 1 23444 7777788
Q ss_pred ecCCCCHHHHHHHHHHHHhcCCCC-----cCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccc
Q 002337 818 VGVNSDVSYRERVLKALTRKFKLL-----EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQ 892 (934)
Q Consensus 818 v~~Pp~~~~r~~Il~~~~~~~~~~-----~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~ 892 (934)
++ |.+.++-.+++...++..... .+..+..+++. +.|+.. .|..+|..|...|..+.
T Consensus 189 l~-~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~-s~G~p~-~i~~l~~~~~~~a~~~~--------------- 250 (269)
T TIGR03015 189 LG-PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRF-SRGIPR-LINILCDRLLLSAFLEE--------------- 250 (269)
T ss_pred CC-CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH-cCCccc-HHHHHHHHHHHHHHHcC---------------
Confidence 88 478888888888887654321 22346677777 578765 59999999888887542
Q ss_pred cCcccccHHHHHHHHHhhC
Q 002337 893 ADSVVVEYDDFVKVLRELS 911 (934)
Q Consensus 893 ~~~~~it~~df~~al~~~~ 911 (934)
...|+.+++++++..+.
T Consensus 251 --~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 --KREIGGEEVREVIAEID 267 (269)
T ss_pred --CCCCCHHHHHHHHHHhh
Confidence 12599999999998764
No 273
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=3.1e-07 Score=110.95 Aligned_cols=179 Identities=17% Similarity=0.246 Sum_probs=110.1
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEE----Ee---cC-----------ccc
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE----YS---CH-----------NLM 434 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~----I~---~~-----------~L~ 434 (934)
.++++.|...+..- +...++||+||+|+|||++|+++|+.++..... -. |. ++.
T Consensus 22 ~~i~~~L~~~l~~~--------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ 93 (620)
T PRK14948 22 EAIATTLKNALISN--------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVI 93 (620)
T ss_pred HHHHHHHHHHHHcC--------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEE
Confidence 45566666655421 234468999999999999999999998652110 01 10 111
Q ss_pred --cccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccC
Q 002337 435 --ASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESH 508 (934)
Q Consensus 435 --~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~ 508 (934)
..........++++++.+.. ....|++|||+|.|.. +....|...++.
T Consensus 94 ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~----------------~a~naLLK~LEe---------- 147 (620)
T PRK14948 94 EIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST----------------AAFNALLKTLEE---------- 147 (620)
T ss_pred EEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH----------------HHHHHHHHHHhc----------
Confidence 11112345577777776652 1236999999997753 112222233221
Q ss_pred CCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhh
Q 002337 509 GYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQ 588 (934)
Q Consensus 509 g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~ 588 (934)
....+++|.+|+++..+.+.+++|+. .+.+..++.++....+++.++.... ..+ ...+..++..
T Consensus 148 -----------Pp~~tvfIL~t~~~~~llpTIrSRc~-~~~f~~l~~~ei~~~L~~ia~kegi---~is-~~al~~La~~ 211 (620)
T PRK14948 148 -----------PPPRVVFVLATTDPQRVLPTIISRCQ-RFDFRRIPLEAMVQHLSEIAEKESI---EIE-PEALTLVAQR 211 (620)
T ss_pred -----------CCcCeEEEEEeCChhhhhHHHHhhee-EEEecCCCHHHHHHHHHHHHHHhCC---CCC-HHHHHHHHHH
Confidence 14567888888888889999999884 7889888888877777776654321 122 3446677777
Q ss_pred cCCCChHHHHHHHH
Q 002337 589 TSGFMPRDLHALVA 602 (934)
Q Consensus 589 t~Gfv~~DL~~L~~ 602 (934)
+.|-. ++...+++
T Consensus 212 s~G~l-r~A~~lLe 224 (620)
T PRK14948 212 SQGGL-RDAESLLD 224 (620)
T ss_pred cCCCH-HHHHHHHH
Confidence 66533 44444444
No 274
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.69 E-value=2.8e-08 Score=112.27 Aligned_cols=172 Identities=20% Similarity=0.335 Sum_probs=107.8
Q ss_pred CCcceecCCCCCcchHHHHHHHHH----cCCcEEEecCcccccc-------------ccchhhhhhHHHHHHHHhCCCcE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATE----CSLNFLSVKGPELINM-------------YIGESEKNVRDIFQKARSARPCV 746 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~----~~~~~i~v~~~~l~~~-------------~~Gese~~v~~lf~~A~~~~p~v 746 (934)
+.+||++|++||||+++|++|... ...+|+++||.++... |.| ....-.-+|++|.+. +
T Consensus 101 ~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---t 176 (403)
T COG1221 101 GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---T 176 (403)
T ss_pred CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeec-ccCCcCchheecCCC---E
Confidence 679999999999999999998532 4679999999776432 334 233345677777655 9
Q ss_pred EEeccccccccCCCCCCCCchhHHHHHHhhhhhccC--------CcCCCCCEEEEEEcCCCCCCChhhhC-CCCcce--e
Q 002337 747 IFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG--------LNDSSQDLFIIGASNRPDLIDPALLR-PGRFDK--L 815 (934)
Q Consensus 747 lfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg--------~~~~~~~v~vI~aTNrp~~lD~allr-pGRfd~--~ 815 (934)
||+|||..+-+. ....|++.||. -.....+|.+|+||| ..++.+++. ..-+.+ .
T Consensus 177 LfLDEI~~LP~~-------------~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~--~~l~~~~~~g~dl~~rl~~ 241 (403)
T COG1221 177 LFLDEIHRLPPE-------------GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATT--EDLEEAVLAGADLTRRLNI 241 (403)
T ss_pred EehhhhhhCCHh-------------HHHHHHHHHHcCceEecCCCCCcCCCceeeeccc--cCHHHHHHhhcchhhhhcC
Confidence 999999998642 33444444443 222346799999998 445555544 111111 2
Q ss_pred eeecCCCCHHHHHHHH-------HHHHhcCCCCcCCCHHHHHhhC-CCCCCH--HHHHHHHHHHHHHHH
Q 002337 816 LYVGVNSDVSYRERVL-------KALTRKFKLLEDVSLYSIAKKC-PPNFTG--ADMYALCADAWFHAA 874 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il-------~~~~~~~~~~~~~~l~~la~~~-t~g~sg--aDl~~l~~~A~~~A~ 874 (934)
+.+.+||-++++.+|+ +.+.++......++..+..+.. ...|.| ++|++++.+++..+-
T Consensus 242 ~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 242 LTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred ceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 3345578888777775 3334444444333332222221 123344 899999999887774
No 275
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.68 E-value=4.9e-08 Score=116.26 Aligned_cols=174 Identities=21% Similarity=0.249 Sum_probs=105.9
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCcccccc-----ccchhhh-------hhHHHHHHHHhCCCcEE
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM-----YIGESEK-------NVRDIFQKARSARPCVI 747 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~-----~~Gese~-------~v~~lf~~A~~~~p~vl 747 (934)
.+..|||+|++||||+++|+++.... +.+|+.++|..+-.. .+|.... .....|..| ...+|
T Consensus 209 ~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL 285 (509)
T PRK05022 209 SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELA---DGGTL 285 (509)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhc---CCCEE
Confidence 36799999999999999999997764 568999999876432 2221111 011235444 34589
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccC--------CcCCCCCEEEEEEcCCCCCCChhhhCCCCccee----
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG--------LNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL---- 815 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg--------~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~---- 815 (934)
||||||.|.. .+...|+..++. ......++.||++||+.- ..+...|+|...
T Consensus 286 ~ldeI~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l---~~~~~~~~f~~dL~~r 349 (509)
T PRK05022 286 FLDEIGELPL-------------ALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDL---REEVRAGRFRADLYHR 349 (509)
T ss_pred EecChhhCCH-------------HHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCH---HHHHHcCCccHHHHhc
Confidence 9999999963 233344433322 112234789999998752 233444566542
Q ss_pred ---eeecCCCCHHHHHHHH---HHHHhcC----CC-CcCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHHHH
Q 002337 816 ---LYVGVNSDVSYRERVL---KALTRKF----KL-LEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHAAK 875 (934)
Q Consensus 816 ---i~v~~Pp~~~~r~~Il---~~~~~~~----~~-~~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A~~ 875 (934)
+.+.+||-.+++++|. +.+++++ .. ...++-+.+.....+.|.| .+|++++.+|+..|..
T Consensus 350 l~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 350 LSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred ccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 4466678888888774 3333322 21 1233333333332356665 8999999999877643
No 276
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.68 E-value=2.7e-07 Score=114.07 Aligned_cols=173 Identities=18% Similarity=0.254 Sum_probs=104.4
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccc-----cccchhh-------hhhHHHHHHHHhCCCcEE
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELIN-----MYIGESE-------KNVRDIFQKARSARPCVI 747 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~-----~~~Gese-------~~v~~lf~~A~~~~p~vl 747 (934)
...+||++|++|||||++|+++.... +.+|+.++|..+.. .++|... ......|+.| ...+|
T Consensus 398 ~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL 474 (686)
T PRK15429 398 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELA---DKSSL 474 (686)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchhhHHHhc---CCCeE
Confidence 45799999999999999999997654 56899999976532 1223211 0111234443 34699
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccC--------CcCCCCCEEEEEEcCCCCCCChhhhCCCCcce-----
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG--------LNDSSQDLFIIGASNRPDLIDPALLRPGRFDK----- 814 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg--------~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~----- 814 (934)
|||||+.+.. .+...|+..++. ......++.+|++|++.- ..+...|+|..
T Consensus 475 ~Ldei~~L~~-------------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l---~~~~~~~~f~~~L~~~ 538 (686)
T PRK15429 475 FLDEVGDMPL-------------ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDL---KKMVADREFRSDLYYR 538 (686)
T ss_pred EEechhhCCH-------------HHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCH---HHHHHcCcccHHHHhc
Confidence 9999999852 233444443332 111235789999998752 23334455554
Q ss_pred --eeeecCCCCHHHHHHHH---HHHHhcC----CCC-cCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHHH
Q 002337 815 --LLYVGVNSDVSYRERVL---KALTRKF----KLL-EDVSLYSIAKKCPPNFTG--ADMYALCADAWFHAA 874 (934)
Q Consensus 815 --~i~v~~Pp~~~~r~~Il---~~~~~~~----~~~-~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A~ 874 (934)
.+.+.+||-.+++++|. +.+++++ ... ..++-+.+.......|.| .+|++++++|+..+-
T Consensus 539 l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~~ 610 (686)
T PRK15429 539 LNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR 610 (686)
T ss_pred cCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCC
Confidence 34466788888878763 4444332 211 123333333322356665 899999999887553
No 277
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.67 E-value=1.4e-07 Score=106.15 Aligned_cols=171 Identities=18% Similarity=0.228 Sum_probs=101.6
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccc-----cccchhhh-------hhHHHHHHHHhCCCcEEE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELIN-----MYIGESEK-------NVRDIFQKARSARPCVIF 748 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~-----~~~Gese~-------~v~~lf~~A~~~~p~vlf 748 (934)
...|+|.|++||||+++|+++-... +.+|+.++|..+-. .++|.... .....|..| ...+||
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~ 105 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLF 105 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhcc---CCCeEE
Confidence 5789999999999999999996554 46899999987631 22232111 012234443 345999
Q ss_pred eccccccccCCCCCCCCchhHHHHHHhhhhhccC--------CcCCCCCEEEEEEcCCC-------CCCChhhhCCCCcc
Q 002337 749 FDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG--------LNDSSQDLFIIGASNRP-------DLIDPALLRPGRFD 813 (934)
Q Consensus 749 iDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg--------~~~~~~~v~vI~aTNrp-------~~lD~allrpGRfd 813 (934)
|||+|.+.. .+...|+..++. ......++.||++|+.. ..+.+.|.. ||.
T Consensus 106 l~~i~~L~~-------------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~ 170 (326)
T PRK11608 106 LDELATAPM-------------LVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA 170 (326)
T ss_pred eCChhhCCH-------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC
Confidence 999999863 233344433322 11112368999999874 134455555 553
Q ss_pred eeeeecCCCCHHHHHHHH---HHHHh----cCCCC--cCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002337 814 KLLYVGVNSDVSYRERVL---KALTR----KFKLL--EDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 873 (934)
Q Consensus 814 ~~i~v~~Pp~~~~r~~Il---~~~~~----~~~~~--~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A 873 (934)
.+.+.+||-.+++++|. ..++. ++... ..++-+.+.......|.| .+|++++++|+..+
T Consensus 171 -~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 171 -FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred -CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 23455567777777764 33332 22221 234444443333456766 78888888877644
No 278
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=5e-07 Score=103.41 Aligned_cols=153 Identities=14% Similarity=0.205 Sum_probs=94.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecC----ccc--cccccchHHHHHHHHHHhhc----CCCEEEEEcch
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCH----NLM--ASSERKTSAALAQAFNTAQS----YSPTILLLRDF 465 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~----~L~--~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEI 465 (934)
.+.++|||||||+|||++++++|+.+........+. ++. ..........++.+++.+.. ....+++|||+
T Consensus 38 ~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~ 117 (367)
T PRK14970 38 LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEV 117 (367)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeCh
Confidence 345799999999999999999999985421111110 000 00111233566666665542 23469999999
Q ss_pred hhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccc
Q 002337 466 DVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFS 545 (934)
Q Consensus 466 D~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~ 545 (934)
|.+.. .....++ ..++. .....++|.+|+.+..+.+++++|+.
T Consensus 118 ~~l~~---------------~~~~~ll-~~le~---------------------~~~~~~~Il~~~~~~kl~~~l~sr~~ 160 (367)
T PRK14970 118 HMLSS---------------AAFNAFL-KTLEE---------------------PPAHAIFILATTEKHKIIPTILSRCQ 160 (367)
T ss_pred hhcCH---------------HHHHHHH-HHHhC---------------------CCCceEEEEEeCCcccCCHHHHhcce
Confidence 97653 1122222 22221 13345666677788889999998875
Q ss_pred eEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcC
Q 002337 546 HEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTS 590 (934)
Q Consensus 546 ~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~ 590 (934)
.+.+..|++++...++...++.... ..+ ...++.++..+.
T Consensus 161 -~v~~~~~~~~~l~~~l~~~~~~~g~---~i~-~~al~~l~~~~~ 200 (367)
T PRK14970 161 -IFDFKRITIKDIKEHLAGIAVKEGI---KFE-DDALHIIAQKAD 200 (367)
T ss_pred -eEecCCccHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHhCC
Confidence 7899999999998888877654332 122 345666666544
No 279
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=8.6e-07 Score=103.74 Aligned_cols=172 Identities=21% Similarity=0.259 Sum_probs=105.4
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc-------------------------EEE
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH-------------------------VVE 427 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~-------------------------~~~ 427 (934)
+.+++.|...+.. -+.+..+||+||+|+|||++|+++|+.+... ++.
T Consensus 23 ~~~v~~L~~~i~~--------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~ 94 (451)
T PRK06305 23 DAVVAVLKNALRF--------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLE 94 (451)
T ss_pred HHHHHHHHHHHHc--------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEE
Confidence 3555666655532 1344568999999999999999999998431 222
Q ss_pred EecCccccccccchHHHHHHHHHHhh----cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCcccc
Q 002337 428 YSCHNLMASSERKTSAALAQAFNTAQ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDE 503 (934)
Q Consensus 428 I~~~~L~~~~~g~~e~~L~~~f~~A~----~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~ 503 (934)
+++.+ ......++++.+... .....|++|||+|.+.. +....|.++++.
T Consensus 95 i~g~~------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~----------------~~~n~LLk~lEe----- 147 (451)
T PRK06305 95 IDGAS------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK----------------EAFNSLLKTLEE----- 147 (451)
T ss_pred eeccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH----------------HHHHHHHHHhhc-----
Confidence 22211 111223333332222 23468999999997754 122333344332
Q ss_pred ccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHH
Q 002337 504 DEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVK 583 (934)
Q Consensus 504 ~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~ 583 (934)
....+++|.+|+.+..|.+.+++|+. .+.+..+++++....++..++.... .. ....++
T Consensus 148 ----------------p~~~~~~Il~t~~~~kl~~tI~sRc~-~v~f~~l~~~el~~~L~~~~~~eg~---~i-~~~al~ 206 (451)
T PRK06305 148 ----------------PPQHVKFFLATTEIHKIPGTILSRCQ-KMHLKRIPEETIIDKLALIAKQEGI---ET-SREALL 206 (451)
T ss_pred ----------------CCCCceEEEEeCChHhcchHHHHhce-EEeCCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHH
Confidence 14567777888888899999999985 8999999999988888876654321 12 234466
Q ss_pred HHHhhcCCCChHHHHHHH
Q 002337 584 DIIGQTSGFMPRDLHALV 601 (934)
Q Consensus 584 ~la~~t~Gfv~~DL~~L~ 601 (934)
.++..+.| ..+++..++
T Consensus 207 ~L~~~s~g-dlr~a~~~L 223 (451)
T PRK06305 207 PIARAAQG-SLRDAESLY 223 (451)
T ss_pred HHHHHcCC-CHHHHHHHH
Confidence 67766654 333333333
No 280
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.66 E-value=5.1e-08 Score=115.47 Aligned_cols=169 Identities=20% Similarity=0.299 Sum_probs=104.2
Q ss_pred CCCcceecCCCCCcchHHHHHHHHH-----------cCCcEEEecCcccccc-----ccchhhh--------hhHHHHHH
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATE-----------CSLNFLSVKGPELINM-----YIGESEK--------NVRDIFQK 738 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~-----------~~~~~i~v~~~~l~~~-----~~Gese~--------~v~~lf~~ 738 (934)
....|||+|++||||+++|+++-.. .+.+|+.++|..+-.. .+|..+. .-..+|+.
T Consensus 241 s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~ 320 (538)
T PRK15424 241 SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 320 (538)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhc
Confidence 3579999999999999999999766 4679999999766322 2232111 11235665
Q ss_pred HHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccC--------CcCCCCCEEEEEEcCCCCCCChhhhCCC
Q 002337 739 ARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG--------LNDSSQDLFIIGASNRPDLIDPALLRPG 810 (934)
Q Consensus 739 A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg--------~~~~~~~v~vI~aTNrp~~lD~allrpG 810 (934)
|.. .+||||||+.|.. .+...|+..++. ......+|.+|+|||+. +. .+...|
T Consensus 321 A~g---GTLfLdeI~~Lp~-------------~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g 381 (538)
T PRK15424 321 AHG---GTLFLDEIGEMPL-------------PLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCD--LE-EDVRQG 381 (538)
T ss_pred cCC---CEEEEcChHhCCH-------------HHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCC--HH-HHHhcc
Confidence 543 4999999999853 233444444332 11223468999999875 22 444557
Q ss_pred Cccee-------eeecCCCCHHHHHHHH---HHHHhc----CCCCcCCCHHH-------HHhhCCCCCCH--HHHHHHHH
Q 002337 811 RFDKL-------LYVGVNSDVSYRERVL---KALTRK----FKLLEDVSLYS-------IAKKCPPNFTG--ADMYALCA 867 (934)
Q Consensus 811 Rfd~~-------i~v~~Pp~~~~r~~Il---~~~~~~----~~~~~~~~l~~-------la~~~t~g~sg--aDl~~l~~ 867 (934)
+|... +.+.+||-.+++++|. ..++++ .+.. +.-+. +...+...|.| ++|++++.
T Consensus 382 ~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~--~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvie 459 (538)
T PRK15424 382 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAP--FSAALRQGLQQCETLLLHYDWPGNVRELRNLME 459 (538)
T ss_pred cchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCC--CCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHH
Confidence 77653 4466788888887774 444443 2221 21111 11122356665 89999999
Q ss_pred HHHHH
Q 002337 868 DAWFH 872 (934)
Q Consensus 868 ~A~~~ 872 (934)
+++..
T Consensus 460 r~~i~ 464 (538)
T PRK15424 460 RLALF 464 (538)
T ss_pred HHHHh
Confidence 88764
No 281
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6.9e-08 Score=106.98 Aligned_cols=98 Identities=33% Similarity=0.574 Sum_probs=75.3
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccc-cccchh-hhhhHHHHHHHH----hCCCcEEEecccccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN-MYIGES-EKNVRDIFQKAR----SARPCVIFFDELDSLAP 757 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~-~~~Ges-e~~v~~lf~~A~----~~~p~vlfiDEid~l~~ 757 (934)
.++|||.||+|+|||+||+.+|+.++.+|.-.+|..|-. .|+|+. |.-+..++..|. .++-.|+||||+|+|..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 479999999999999999999999999999999998854 599987 445677776653 34456999999999984
Q ss_pred CCCCC---CCCchhHHHHHHhhhhhccCC
Q 002337 758 ARGAS---GDSGGVMDRVVSQMLAEIDGL 783 (934)
Q Consensus 758 ~r~~~---~~~~~~~~~v~~~lL~~ldg~ 783 (934)
+-.+- .|.+| +.|...||..++|.
T Consensus 306 ~~~~i~~~RDVsG--EGVQQaLLKllEGt 332 (564)
T KOG0745|consen 306 KAESIHTSRDVSG--EGVQQALLKLLEGT 332 (564)
T ss_pred cCccccccccccc--hhHHHHHHHHhccc
Confidence 43221 12222 45778888888764
No 282
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=1.1e-06 Score=106.40 Aligned_cols=149 Identities=19% Similarity=0.249 Sum_probs=92.8
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEe----c--------------Ccccc--ccccchhhhhhHHHHHHHHh--
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSV----K--------------GPELI--NMYIGESEKNVRDIFQKARS-- 741 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v----~--------------~~~l~--~~~~Gese~~v~~lf~~A~~-- 741 (934)
...+||+||+|+|||++|+++|+.+....... . ..+++ ....+..-..+|++.+.+..
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p 117 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAP 117 (620)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhCh
Confidence 35789999999999999999999875421000 0 01111 11112233567888877753
Q ss_pred --CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeec
Q 002337 742 --ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVG 819 (934)
Q Consensus 742 --~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~ 819 (934)
....|++|||+|.|. ....+.||..|+.. ...+++|++|+.++.+-+.+++ |+ ..+.|.
T Consensus 118 ~~~~~KViIIDEad~Lt-------------~~a~naLLK~LEeP---p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~ 178 (620)
T PRK14948 118 VQARWKVYVIDECHMLS-------------TAAFNALLKTLEEP---PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFR 178 (620)
T ss_pred hcCCceEEEEECccccC-------------HHHHHHHHHHHhcC---CcCeEEEEEeCChhhhhHHHHh--he-eEEEec
Confidence 234699999999884 23567788887754 2456667777788888899987 77 456676
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCc-CCCHHHHHhh
Q 002337 820 VNSDVSYRERVLKALTRKFKLLE-DVSLYSIAKK 852 (934)
Q Consensus 820 ~Pp~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~ 852 (934)
. +..++-...++...++.++.- ...+..+++.
T Consensus 179 ~-l~~~ei~~~L~~ia~kegi~is~~al~~La~~ 211 (620)
T PRK14948 179 R-IPLEAMVQHLSEIAEKESIEIEPEALTLVAQR 211 (620)
T ss_pred C-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4 445555555555444433221 1225566665
No 283
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.64 E-value=5.1e-08 Score=99.19 Aligned_cols=122 Identities=13% Similarity=0.204 Sum_probs=72.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC----cEEEEecCccccccccchHHHHHHHHHHhh----cCCCEEEEEcchhh
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGI----HVVEYSCHNLMASSERKTSAALAQAFNTAQ----SYSPTILLLRDFDV 467 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~----~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~----~~~P~IL~IDEID~ 467 (934)
|..++||.||+|||||.+++++|..+.. +++.++++++..... ....+...+..+. .....|+||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~--~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDD--VESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHH--CSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccch--HHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4457999999999999999999999996 999999998766111 1111111111110 11124999999999
Q ss_pred ccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC
Q 002337 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE 534 (934)
Q Consensus 468 L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~ 534 (934)
..+. .....+. ....+.+.|.++++. |.............++++|+|+|-..
T Consensus 80 a~~~---~~~~~~v--~~~~V~~~LL~~le~----------g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPS---NSGGADV--SGEGVQNSLLQLLEG----------GTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHT---TTTCSHH--HHHHHHHHHHHHHHH----------SEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccc---ccccchh--hHHHHHHHHHHHhcc----------cceecccceEEEeCCceEEEeccccc
Confidence 8873 1111111 123455555555542 11111122245567899999998654
No 284
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=2.3e-07 Score=107.14 Aligned_cols=162 Identities=16% Similarity=0.174 Sum_probs=92.6
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcE-EE---------ecC--------------ccccccccchh---hhhhHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNF-LS---------VKG--------------PELINMYIGES---EKNVRDIF 736 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~-i~---------v~~--------------~~l~~~~~Ges---e~~v~~lf 736 (934)
+..+||+||||+|||++|+++|+.+...- .. -.| .++. .+-|.. -..++++.
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~-~~~~~~~~~id~Ir~l~ 116 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRLLR 116 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeE-eecccccCCHHHHHHHH
Confidence 45699999999999999999999875420 00 000 0110 111211 23455555
Q ss_pred HHHHh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCc
Q 002337 737 QKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRF 812 (934)
Q Consensus 737 ~~A~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRf 812 (934)
+.+.. ....|++|||+|.+.. .-.+.|+..++... ...++|.+|+.+..+-+.+.+ |.
T Consensus 117 ~~~~~~p~~~~~kvvIIdea~~l~~-------------~~~~~LLk~LEep~---~~t~~Il~t~~~~kl~~tl~s--R~ 178 (397)
T PRK14955 117 ENVRYGPQKGRYRVYIIDEVHMLSI-------------AAFNAFLKTLEEPP---PHAIFIFATTELHKIPATIAS--RC 178 (397)
T ss_pred HHHhhchhcCCeEEEEEeChhhCCH-------------HHHHHHHHHHhcCC---CCeEEEEEeCChHHhHHHHHH--HH
Confidence 55421 2336999999998852 23455666666432 244445555667777788887 66
Q ss_pred ceeeeecCCCCHHHHHHHHHHHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHH
Q 002337 813 DKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 813 d~~i~v~~Pp~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
. .+.+. |++.++-..+++...++.... .+..+..+++.+ |-+-.++.+.+..
T Consensus 179 ~-~v~f~-~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s--~g~lr~a~~~L~k 231 (397)
T PRK14955 179 Q-RFNFK-RIPLEEIQQQLQGICEAEGISVDADALQLIGRKA--QGSMRDAQSILDQ 231 (397)
T ss_pred H-HhhcC-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 4 67777 366666666666666544331 222355666662 3344444454444
No 285
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.63 E-value=3.4e-07 Score=110.66 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=67.9
Q ss_pred CCEEEEEEcCCC--CCCChhhhCCCCcc---eeeeec--CCCCHHHHHHHHHHHHhc---CCCCcCCCH---HHHHh---
Q 002337 788 QDLFIIGASNRP--DLIDPALLRPGRFD---KLLYVG--VNSDVSYRERVLKALTRK---FKLLEDVSL---YSIAK--- 851 (934)
Q Consensus 788 ~~v~vI~aTNrp--~~lD~allrpGRfd---~~i~v~--~Pp~~~~r~~Il~~~~~~---~~~~~~~~l---~~la~--- 851 (934)
.++.||+++|.. ..+||+++. ||+ ..++++ +|.+.+.|.++.+.+.+. ....+.++- ..+.+
T Consensus 267 ~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~ 344 (608)
T TIGR00764 267 CDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQ 344 (608)
T ss_pred cceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHH
Confidence 478999999975 478999999 999 666664 366788887776554432 212223332 22221
Q ss_pred hC---C--CCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhhCC
Q 002337 852 KC---P--PNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSP 912 (934)
Q Consensus 852 ~~---t--~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~p 912 (934)
+. . -..+-++|.++|++|...|..+ ....|+.+|+++|++..+.
T Consensus 345 R~ag~r~~lsl~~R~L~~llR~A~~iA~~~-----------------~~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 345 RRAGRKDHLTLRLRELGGLVRAAGDIAKSS-----------------GKVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred HHHhcccccCCCHHHHHHHHHHHHHHHHhc-----------------CCceecHHHHHHHHHHHHH
Confidence 10 0 1134589999999986554321 1236999999999987754
No 286
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=3.1e-08 Score=121.07 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=44.2
Q ss_pred cccceEEEcCCCCHHHHHHHHHHhcccccccc-------CCCCchHHHHHHHhhcCC---CChHHHHHHHH
Q 002337 542 RCFSHEISMGPLTEQQRVEMLSQLLQPVSELT-------SDTGSEEFVKDIIGQTSG---FMPRDLHALVA 602 (934)
Q Consensus 542 rrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~-------~d~~~~~~L~~la~~t~G---fv~~DL~~L~~ 602 (934)
.+....++.| +.+|..|.+.++.+++.+. +|.....|+.++.....+ ++.||+..+..
T Consensus 144 ~~~~~~LSgG---erqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~ 211 (638)
T PRK10636 144 ERPVSDFSGG---WRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDP 211 (638)
T ss_pred cCchhhcCHH---HHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence 3334588899 9999999999998887663 444556788888877666 78899888753
No 287
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.62 E-value=8.5e-07 Score=96.73 Aligned_cols=178 Identities=19% Similarity=0.265 Sum_probs=101.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCc-EEE---EecC----c----cccc----cccch-H---HHHHHHH-HHhhcCCC
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIH-VVE---YSCH----N----LMAS----SERKT-S---AALAQAF-NTAQSYSP 457 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~-~~~---I~~~----~----L~~~----~~g~~-e---~~L~~~f-~~A~~~~P 457 (934)
.++|+||+|+||||+++.+++++... +.. +++. + +... ..+.. . ..+.+.+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 38999999999999999999998632 211 1111 0 1000 00111 1 1222222 22334567
Q ss_pred EEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc--cEEEEEecCCCCC
Q 002337 458 TILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ--QVLLVAAADSSEG 535 (934)
Q Consensus 458 ~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~--~ViVIatTn~~~~ 535 (934)
.+++|||++.+.. .....+..+..-. ..... .++++|...-...
T Consensus 125 ~vliiDe~~~l~~----------------~~~~~l~~l~~~~------------------~~~~~~~~vvl~g~~~~~~~ 170 (269)
T TIGR03015 125 ALLVVDEAQNLTP----------------ELLEELRMLSNFQ------------------TDNAKLLQIFLVGQPEFRET 170 (269)
T ss_pred eEEEEECcccCCH----------------HHHHHHHHHhCcc------------------cCCCCeEEEEEcCCHHHHHH
Confidence 8999999987643 1122333332100 00122 2233333221111
Q ss_pred C----ChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh
Q 002337 536 L----PPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRK 611 (934)
Q Consensus 536 L----d~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r 611 (934)
+ ...+.+|+...+.+++.+.++..+++...++.........-....++.+.+.+.|.. +.+..++..+...+..+
T Consensus 171 l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~ 249 (269)
T TIGR03015 171 LQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLE 249 (269)
T ss_pred HcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHc
Confidence 1 124666777889999999999999999887643221111123567888999999985 45999998887766553
No 288
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=3.9e-07 Score=106.61 Aligned_cols=143 Identities=20% Similarity=0.250 Sum_probs=92.5
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC-------------------------cEEEecCccccccccchhhhhhHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL-------------------------NFLSVKGPELINMYIGESEKNVRDIFQK 738 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~-------------------------~~i~v~~~~l~~~~~Gese~~v~~lf~~ 738 (934)
+..+|||||+|+|||++|+++|+.+.. +++.+++... .| -..++++-+.
T Consensus 39 ~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~ 112 (451)
T PRK06305 39 AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASH----RG--IEDIRQINET 112 (451)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeecccc----CC--HHHHHHHHHH
Confidence 456899999999999999999987632 2333332111 11 1233333322
Q ss_pred HH----hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcce
Q 002337 739 AR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDK 814 (934)
Q Consensus 739 A~----~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~ 814 (934)
.. .....|++|||+|.+. ....+.|+..|+... ..+++|.+||.+..|.+++++ |+.
T Consensus 113 l~~~~~~~~~kvvIIdead~lt-------------~~~~n~LLk~lEep~---~~~~~Il~t~~~~kl~~tI~s--Rc~- 173 (451)
T PRK06305 113 VLFTPSKSRYKIYIIDEVHMLT-------------KEAFNSLLKTLEEPP---QHVKFFLATTEIHKIPGTILS--RCQ- 173 (451)
T ss_pred HHhhhhcCCCEEEEEecHHhhC-------------HHHHHHHHHHhhcCC---CCceEEEEeCChHhcchHHHH--hce-
Confidence 22 2456799999999884 224567777777642 356666777888899999998 774
Q ss_pred eeeecCCCCHHHHHHHHHHHHhcCCCCc-CCCHHHHHhh
Q 002337 815 LLYVGVNSDVSYRERVLKALTRKFKLLE-DVSLYSIAKK 852 (934)
Q Consensus 815 ~i~v~~Pp~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~ 852 (934)
.++|.. ++.++-..+++...++.++.- +..+..++..
T Consensus 174 ~v~f~~-l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~ 211 (451)
T PRK06305 174 KMHLKR-IPEETIIDKLALIAKQEGIETSREALLPIARA 211 (451)
T ss_pred EEeCCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 578874 667777777777666554322 2235566666
No 289
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=4.1e-08 Score=111.21 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=52.7
Q ss_pred CCChhhhcccceEEEcCCCCHHHHHHHHHHhcccccccc-------CCCCchHHHHHHHhhcCC---CChHHHHHHHHHH
Q 002337 535 GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELT-------SDTGSEEFVKDIIGQTSG---FMPRDLHALVADA 604 (934)
Q Consensus 535 ~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~-------~d~~~~~~L~~la~~t~G---fv~~DL~~L~~~A 604 (934)
++.+.+...-...++.| ++.|+++.+.++.+++.|. +|+....||++....... .++||..+|..-+
T Consensus 186 GFt~emq~~pt~slSGG---WrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~ 262 (582)
T KOG0062|consen 186 GFTPEMQLQPTKSLSGG---WRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVC 262 (582)
T ss_pred CCCHHHHhccccccCcc---hhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHH
Confidence 45666666666789999 9999999999999988774 445557899998887665 6889999887544
No 290
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.62 E-value=8e-08 Score=113.90 Aligned_cols=171 Identities=16% Similarity=0.249 Sum_probs=101.9
Q ss_pred CCcceecCCCCCcchHHHHHHHHH---cCCcEEEecCcccccc-----ccchhhh--------hhHHHHHHHHhCCCcEE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATE---CSLNFLSVKGPELINM-----YIGESEK--------NVRDIFQKARSARPCVI 747 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~---~~~~~i~v~~~~l~~~-----~~Gese~--------~v~~lf~~A~~~~p~vl 747 (934)
..+||++|++||||+++|+++-.. .+.+|+.++|..+-.. .+|..+. .-..+|+.|. ..+|
T Consensus 235 ~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTL 311 (526)
T TIGR02329 235 DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTL 311 (526)
T ss_pred CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcC---CceE
Confidence 579999999999999999999765 3679999999765322 2222111 1223555554 3499
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccC--------CcCCCCCEEEEEEcCCCCCCChhhhCCCCcce-----
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG--------LNDSSQDLFIIGASNRPDLIDPALLRPGRFDK----- 814 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg--------~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~----- 814 (934)
|||||+.|.. .+...|+..++. ......+|.+|++||+.- ..+...|+|..
T Consensus 312 fLdeI~~Lp~-------------~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l---~~~v~~g~fr~dL~~r 375 (526)
T TIGR02329 312 FLDEIGEMPL-------------PLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCAL---TTAVQQGRFRRDLFYR 375 (526)
T ss_pred EecChHhCCH-------------HHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCH---HHHhhhcchhHHHHHh
Confidence 9999999853 233334333321 111224578999998752 23334455554
Q ss_pred --eeeecCCCCHHHHHHHH---HHHHhcCCCC--cCCCHHHHHh-------hCCCCCCH--HHHHHHHHHHHHHH
Q 002337 815 --LLYVGVNSDVSYRERVL---KALTRKFKLL--EDVSLYSIAK-------KCPPNFTG--ADMYALCADAWFHA 873 (934)
Q Consensus 815 --~i~v~~Pp~~~~r~~Il---~~~~~~~~~~--~~~~l~~la~-------~~t~g~sg--aDl~~l~~~A~~~A 873 (934)
.+.+.+||-.+++++|. ..+++++... ..++-+.+.. .....|.| .+|++++.+++..+
T Consensus 376 L~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 376 LSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred cCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 24566678888887764 4444433111 1122222111 11356766 78889988877653
No 291
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.62 E-value=4.1e-07 Score=106.67 Aligned_cols=170 Identities=23% Similarity=0.334 Sum_probs=106.3
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHH--------hCCCcEEEecccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKAR--------SARPCVIFFDELDSL 755 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~--------~~~p~vlfiDEid~l 755 (934)
.+-+||+||||.||||||+.+|+++|+.++.||++|=-+ ...++.....|- ..+|..|++||||.-
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCC
Confidence 445678999999999999999999999999999987432 222333322221 267889999999854
Q ss_pred ccCCCCCCCCchhHHHHHHhhhhh---ccCCcCCC-----------CCEEEEEEcCCCCCCChhhhCCCCcceeeeecCC
Q 002337 756 APARGASGDSGGVMDRVVSQMLAE---IDGLNDSS-----------QDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVN 821 (934)
Q Consensus 756 ~~~r~~~~~~~~~~~~v~~~lL~~---ldg~~~~~-----------~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~P 821 (934)
. -.+.+-+++-+... ..|-.... -.--|||.+| +.--|||+----|-+.|+|..
T Consensus 400 ~---------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICN--dLYaPaLR~Lr~~A~ii~f~~- 467 (877)
T KOG1969|consen 400 P---------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICN--DLYAPALRPLRPFAEIIAFVP- 467 (877)
T ss_pred c---------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEec--CccchhhhhcccceEEEEecC-
Confidence 3 12233333333211 11211100 0135778888 456788864435899999984
Q ss_pred CCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 002337 822 SDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAK 875 (934)
Q Consensus 822 p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~ 875 (934)
|....-.+=|+....+-+.. +|...|...| .++..||++.++.-...|.+
T Consensus 468 p~~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~--el~~~DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 468 PSQSRLVERLNEICHRENMR--ADSKALNALC--ELTQNDIRSCINTLQFLASN 517 (877)
T ss_pred CChhHHHHHHHHHHhhhcCC--CCHHHHHHHH--HHhcchHHHHHHHHHHHHHh
Confidence 55555555555555544432 3455555553 34568999999887777754
No 292
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.62 E-value=2.3e-07 Score=113.07 Aligned_cols=133 Identities=23% Similarity=0.369 Sum_probs=87.6
Q ss_pred CcceecCCCCCcchHHHHHHHHHc-----------------------------------CCcEEEecCccccccccchh-
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC-----------------------------------SLNFLSVKGPELINMYIGES- 728 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~-----------------------------------~~~~i~v~~~~l~~~~~Ges- 728 (934)
.++||.|++|||||++|++++..+ ..+|+.+.........+|.-
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 579999999999999999999877 24566655433333334421
Q ss_pred -hhhh--------HHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCC---------c-CCCCC
Q 002337 729 -EKNV--------RDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL---------N-DSSQD 789 (934)
Q Consensus 729 -e~~v--------~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~---------~-~~~~~ 789 (934)
++.+ ..++.. +...||||||++.+. ..+++.|+..|+.- . ....+
T Consensus 106 ~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l~-------------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~ 169 (633)
T TIGR02442 106 IERALREGEKAFQPGLLAE---AHRGILYIDEVNLLD-------------DHLVDVLLDAAAMGVNRVEREGLSVSHPAR 169 (633)
T ss_pred HHHHhhcCCeeecCcceee---cCCCeEEeChhhhCC-------------HHHHHHHHHHHhcCCEEEEECCceeeecCC
Confidence 1101 011111 223599999999985 23556666655421 0 11246
Q ss_pred EEEEEEcCCCC-CCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHH
Q 002337 790 LFIIGASNRPD-LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALT 835 (934)
Q Consensus 790 v~vI~aTNrp~-~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~ 835 (934)
+.+|+|+|.-+ .+.++|+. ||+..|.++.|.+.+++.+|++...
T Consensus 170 ~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 170 FVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred eEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 89999998543 58899999 9999999987667788888886543
No 293
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.62 E-value=1.2e-07 Score=113.04 Aligned_cols=171 Identities=16% Similarity=0.242 Sum_probs=100.3
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCcccccc-----ccchhh-------hhhHHHHHHHHhCCCcEEE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM-----YIGESE-------KNVRDIFQKARSARPCVIF 748 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~-----~~Gese-------~~v~~lf~~A~~~~p~vlf 748 (934)
...|+|+|++||||+++|+++-... +.+|+.++|..+-.. .+|... ..-..+|+.|. ..+||
T Consensus 227 ~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~ 303 (520)
T PRK10820 227 DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVL 303 (520)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEE
Confidence 4679999999999999999985543 468999999776432 122111 11123455543 35899
Q ss_pred eccccccccCCCCCCCCchhHHHHHHhhhhhccC--------CcCCCCCEEEEEEcCCCC-------CCChhhhCCCCcc
Q 002337 749 FDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG--------LNDSSQDLFIIGASNRPD-------LIDPALLRPGRFD 813 (934)
Q Consensus 749 iDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg--------~~~~~~~v~vI~aTNrp~-------~lD~allrpGRfd 813 (934)
|||||.+.+. +...|+..++. -.....++.||+||+++- .+.+.|.. |+.
T Consensus 304 LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~ 368 (520)
T PRK10820 304 LDEIGEMSPR-------------MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN 368 (520)
T ss_pred EeChhhCCHH-------------HHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC
Confidence 9999998532 23333333321 111224688999998752 12233333 433
Q ss_pred eeeeecCCCCHHHHHHHH---HHHHh----cCCC-CcCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002337 814 KLLYVGVNSDVSYRERVL---KALTR----KFKL-LEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 873 (934)
Q Consensus 814 ~~i~v~~Pp~~~~r~~Il---~~~~~----~~~~-~~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A 873 (934)
.+.+.+||-.+++++|. ..+++ +... ...++-+.+.....+.|.| ++|++++.+|+..+
T Consensus 369 -~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 369 -VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred -eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence 25566778877777763 23333 2322 1234444444443456765 78888888777654
No 294
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.61 E-value=6.6e-08 Score=118.54 Aligned_cols=171 Identities=19% Similarity=0.287 Sum_probs=100.6
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCcccc-----ccccchh----hhhhHHHHHHHHhCCCcEEEecc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELI-----NMYIGES----EKNVRDIFQKARSARPCVIFFDE 751 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~-----~~~~Ges----e~~v~~lf~~A~~~~p~vlfiDE 751 (934)
...|||+|++||||+++|+++.... +.+|+.|+|..+- +.++|.. .......|+.| ...+|||||
T Consensus 348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~lde 424 (638)
T PRK11388 348 SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEK 424 (638)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcC
Confidence 5679999999999999999997764 4689999997652 2233321 11111234433 346999999
Q ss_pred ccccccCCCCCCCCchhHHHHHHhhhhhccC--------CcCCCCCEEEEEEcCCCCCCChhhhCCCCcce-------ee
Q 002337 752 LDSLAPARGASGDSGGVMDRVVSQMLAEIDG--------LNDSSQDLFIIGASNRPDLIDPALLRPGRFDK-------LL 816 (934)
Q Consensus 752 id~l~~~r~~~~~~~~~~~~v~~~lL~~ldg--------~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~-------~i 816 (934)
|+.+... +...|+..++. ......++.||+|||+.- ..+...|+|.. .+
T Consensus 425 i~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~ 488 (638)
T PRK11388 425 VEYLSPE-------------LQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAF 488 (638)
T ss_pred hhhCCHH-------------HHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhcee
Confidence 9998532 33333333321 111123688999999752 34444567744 34
Q ss_pred eecCCCCHHHHHHHH---HHHHhcC----CCCcCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002337 817 YVGVNSDVSYRERVL---KALTRKF----KLLEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 873 (934)
Q Consensus 817 ~v~~Pp~~~~r~~Il---~~~~~~~----~~~~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A 873 (934)
.+.+||-.+++++|. +.+++++ .....++-+.+.......|.| ++|+++++.|+..+
T Consensus 489 ~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 489 EITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred EEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC
Confidence 456678777666653 3443332 111123333333322345554 78888888877544
No 295
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=3.5e-07 Score=109.36 Aligned_cols=157 Identities=22% Similarity=0.259 Sum_probs=100.2
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCc------------------------EEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLN------------------------FLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~------------------------~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+..+|||||+|+|||++|+++|+.+... ++.+++.. ...-..++++.+.+
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~ 111 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEI 111 (563)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHH
Confidence 4568999999999999999999986431 22222110 01123455555443
Q ss_pred H----hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 R----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~----~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
. .....|++|||+|.+. ....+.||..|+.. ...+++|.+|+.++.|.+++++ |+. .
T Consensus 112 ~~~p~~~~~KVvIIDEa~~Ls-------------~~a~naLLK~LEep---p~~~vfI~~tte~~kL~~tI~S--Rc~-~ 172 (563)
T PRK06647 112 MFPPASSRYRVYIIDEVHMLS-------------NSAFNALLKTIEEP---PPYIVFIFATTEVHKLPATIKS--RCQ-H 172 (563)
T ss_pred HhchhcCCCEEEEEEChhhcC-------------HHHHHHHHHhhccC---CCCEEEEEecCChHHhHHHHHH--hce-E
Confidence 3 2345699999999884 23567788777754 3456677777778889999988 876 5
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCCc-CCCHHHHHhhCCCCCCHHHHHHHHHH
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLLE-DVSLYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
+.|.. ++.++...+++...++.++.- +..+..+++.. |-+.+++.+++..
T Consensus 173 ~~f~~-l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s--~GdlR~alslLdk 223 (563)
T PRK06647 173 FNFRL-LSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKS--TGSVRDAYTLFDQ 223 (563)
T ss_pred EEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 67774 566777777777665544322 22355666662 3355566555543
No 296
>PRK09087 hypothetical protein; Validated
Probab=98.61 E-value=3.2e-07 Score=97.65 Aligned_cols=137 Identities=14% Similarity=0.166 Sum_probs=90.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCC
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESL 477 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~ 477 (934)
..++|+||+|+|||+|+++++...+..++ +..++. ...+.... ..+++||+++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~-----------~~~~~~~~---~~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIG-----------SDAANAAA---EGPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcc-----------hHHHHhhh---cCeEEEECCCCCCC-------
Confidence 34899999999999999999988765533 222111 11111111 14788999996531
Q ss_pred CCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCC---CChhhhcccc--eEEEcCC
Q 002337 478 PNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG---LPPTIRRCFS--HEISMGP 552 (934)
Q Consensus 478 ~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~---Ld~aLrrrF~--~eI~i~~ 552 (934)
...++..+++.+.+ .+..+|++++..+.. ..+++++|+. ..+++.+
T Consensus 102 ------~~~~lf~l~n~~~~-----------------------~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~ 152 (226)
T PRK09087 102 ------DETGLFHLINSVRQ-----------------------AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGE 152 (226)
T ss_pred ------CHHHHHHHHHHHHh-----------------------CCCeEEEECCCChHHhccccccHHHHHhCCceeecCC
Confidence 12456666655432 345577777765543 3678999985 4899999
Q ss_pred CCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcC
Q 002337 553 LTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTS 590 (934)
Q Consensus 553 Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~ 590 (934)
|+.+.|.++++..++.... .+ .++.++.++++..
T Consensus 153 pd~e~~~~iL~~~~~~~~~---~l-~~ev~~~La~~~~ 186 (226)
T PRK09087 153 PDDALLSQVIFKLFADRQL---YV-DPHVVYYLVSRME 186 (226)
T ss_pred CCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHhh
Confidence 9999999999998865322 12 2455677777766
No 297
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.61 E-value=4e-08 Score=111.92 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=41.0
Q ss_pred CChhhhcccceEEEcCCCCHHHHHHHHHHhccccccc-------cCCCCchHHHHHHHhhcCC
Q 002337 536 LPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSEL-------TSDTGSEEFVKDIIGQTSG 591 (934)
Q Consensus 536 Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l-------~~d~~~~~~L~~la~~t~G 591 (934)
..+.+..+-...++.| +..|..+.+.++.++..+ |+|.+...||+++......
T Consensus 210 f~~~m~~k~~~~~SgG---wrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~ 269 (614)
T KOG0927|consen 210 FLSEMQDKKVKDLSGG---WRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR 269 (614)
T ss_pred CCHhHHHHHhhccCch---HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC
Confidence 4455555555678899 999999999999887665 5666778999988877765
No 298
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.60 E-value=6.1e-08 Score=116.35 Aligned_cols=172 Identities=22% Similarity=0.303 Sum_probs=100.4
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccc-----cchhhhh-------hHHHHHHHHhCCCcEE
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMY-----IGESEKN-------VRDIFQKARSARPCVI 747 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~-----~Gese~~-------v~~lf~~A~~~~p~vl 747 (934)
....|||+|++||||+++|+++.... +.+|+.++|..+...+ +|..... -...|..| ...+|
T Consensus 218 ~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL 294 (534)
T TIGR01817 218 SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTL 294 (534)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeE
Confidence 35789999999999999999998764 5699999997763221 2211100 01123333 34699
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccCC--------cCCCCCEEEEEEcCCCCCCChhhhCCCCcce-----
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL--------NDSSQDLFIIGASNRPDLIDPALLRPGRFDK----- 814 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~--------~~~~~~v~vI~aTNrp~~lD~allrpGRfd~----- 814 (934)
|||||+.+.. .+...|+..++.- .....++.+|++|+.. +. .+...|+|..
T Consensus 295 ~ldei~~L~~-------------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~--l~-~~~~~~~f~~~L~~r 358 (534)
T TIGR01817 295 FLDEIGEISP-------------AFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD--LE-EAVAKGEFRADLYYR 358 (534)
T ss_pred EEechhhCCH-------------HHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC--HH-HHHHcCCCCHHHHHH
Confidence 9999999853 2334444444321 1112368999999864 12 2334556643
Q ss_pred --eeeecCCCCHHHHHHH---HHHHHhcC----CCCcCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002337 815 --LLYVGVNSDVSYRERV---LKALTRKF----KLLEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 873 (934)
Q Consensus 815 --~i~v~~Pp~~~~r~~I---l~~~~~~~----~~~~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A 873 (934)
.+.+.+||-.+++++| .+.+++++ .....++-+.+.....+.|.| .+|++++.+|+..+
T Consensus 359 l~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 359 INVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred hcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 3345556776666655 34444432 222233333332222345655 88999999887654
No 299
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=3.3e-07 Score=110.37 Aligned_cols=143 Identities=17% Similarity=0.277 Sum_probs=93.0
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC------------------------cEEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL------------------------NFLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~------------------------~~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+..+|||||+|+|||++|+++|+.++. +++.+++.. ...-..++++.+.+
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~ 111 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENV 111 (576)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHH
Confidence 456799999999999999999988643 133333221 11123567777666
Q ss_pred HhC----CCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 RSA----RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~~~----~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
... ...|++|||+|.+. ....+.||..|+.. ...+++|.+|+.++.|.+.+++ |+. .
T Consensus 112 ~~~p~~~~~KVvIIdev~~Lt-------------~~a~naLLk~LEep---p~~~~fIl~t~~~~kl~~tI~S--Rc~-~ 172 (576)
T PRK14965 112 KYLPSRSRYKIFIIDEVHMLS-------------TNAFNALLKTLEEP---PPHVKFIFATTEPHKVPITILS--RCQ-R 172 (576)
T ss_pred HhccccCCceEEEEEChhhCC-------------HHHHHHHHHHHHcC---CCCeEEEEEeCChhhhhHHHHH--hhh-h
Confidence 432 23599999999885 23457777777754 2456777777888999999987 763 6
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCC-cCCCHHHHHhh
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKK 852 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~ 852 (934)
+.|.. ++.++-...++..+++.++. ++..+..+++.
T Consensus 173 ~~f~~-l~~~~i~~~L~~i~~~egi~i~~~al~~la~~ 209 (576)
T PRK14965 173 FDFRR-IPLQKIVDRLRYIADQEGISISDAALALVARK 209 (576)
T ss_pred hhcCC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 66763 55666666666655554432 12235556665
No 300
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.60 E-value=1.3e-08 Score=103.15 Aligned_cols=119 Identities=27% Similarity=0.518 Sum_probs=75.5
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCcccccc-----ccchhh-------hhhHHHHHHHHhCCCcEE
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM-----YIGESE-------KNVRDIFQKARSARPCVI 747 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~-----~~Gese-------~~v~~lf~~A~~~~p~vl 747 (934)
.+..|||+|++||||+.+|+++-+.. +.+|+.|+|+.+-.. .+|... ..-..+|+.|... +|
T Consensus 21 ~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL 97 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG---TL 97 (168)
T ss_dssp STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS---EE
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce---EE
Confidence 35799999999999999999997754 568999999765322 233211 1234677777665 99
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhcc--------CCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeec
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEID--------GLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVG 819 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ld--------g~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~ 819 (934)
|||||+.|.+ .+...|+..|+ +-....-++.||++|+.+ +. .+...|+|...+|..
T Consensus 98 ~Ld~I~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~--l~-~~v~~g~fr~dLy~r 161 (168)
T PF00158_consen 98 FLDEIEDLPP-------------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD--LE-ELVEQGRFREDLYYR 161 (168)
T ss_dssp EEETGGGS-H-------------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HH-HHHHTTSS-HHHHHH
T ss_pred eecchhhhHH-------------HHHHHHHHHHhhchhccccccccccccceEEeecCcC--HH-HHHHcCCChHHHHHH
Confidence 9999999963 23444444433 111123479999999964 33 445558998777765
Q ss_pred C
Q 002337 820 V 820 (934)
Q Consensus 820 ~ 820 (934)
+
T Consensus 162 L 162 (168)
T PF00158_consen 162 L 162 (168)
T ss_dssp H
T ss_pred h
Confidence 4
No 301
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.6e-07 Score=100.70 Aligned_cols=98 Identities=19% Similarity=0.273 Sum_probs=69.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcccc-ccccchHH-HHHHHHHHhh----cCCCEEEEEcchhhcccc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA-SSERKTSA-ALAQAFNTAQ----SYSPTILLLRDFDVFRNL 471 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~-~~~g~~e~-~L~~~f~~A~----~~~P~IL~IDEID~L~~~ 471 (934)
.+|||+||+|||||.||+.+|+.++.+|..-++..|.. .|.|+.-. .+..+++.|. +..-+|++|||||.++.+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 57999999999999999999999999999999988875 56676544 4444554443 124689999999999986
Q ss_pred ccCCCCCCccccchHHHHHHHHHhcC
Q 002337 472 VSNESLPNDQVGLSSEVASVIREFTE 497 (934)
Q Consensus 472 ~~~~~~~~d~~~~~~ev~~~L~~ll~ 497 (934)
..+..-.+|-.+ .-|.+.|..+++
T Consensus 178 SeN~SITRDVSG--EGVQQALLKiiE 201 (408)
T COG1219 178 SENPSITRDVSG--EGVQQALLKIIE 201 (408)
T ss_pred CCCCCcccccCc--hHHHHHHHHHHc
Confidence 544333333222 235555555543
No 302
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.59 E-value=9.3e-08 Score=110.27 Aligned_cols=137 Identities=20% Similarity=0.260 Sum_probs=78.6
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHcCC--cEEEecCc-cccccccchh-hhhh--HHHHHHHHhC---CCcEEEeccc
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATECSL--NFLSVKGP-ELINMYIGES-EKNV--RDIFQKARSA---RPCVIFFDEL 752 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~~~--~~i~v~~~-~l~~~~~Ges-e~~v--~~lf~~A~~~---~p~vlfiDEi 752 (934)
..+.++||+||||||||++|++++...+. +|..+.+. ......+|.. -... ..-|.+.... ...+||+|||
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI 116 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEI 116 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccc
Confidence 34789999999999999999999987643 34433321 0111223321 0000 1123222211 2349999999
Q ss_pred cccccCCCCCCCCchhHHHHHHhhhhhccCCc-------CCCCCEEEEEEcCCCCC---CChhhhCCCCcceeeeecCCC
Q 002337 753 DSLAPARGASGDSGGVMDRVVSQMLAEIDGLN-------DSSQDLFIIGASNRPDL---IDPALLRPGRFDKLLYVGVNS 822 (934)
Q Consensus 753 d~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~-------~~~~~v~vI~aTNrp~~---lD~allrpGRfd~~i~v~~Pp 822 (934)
..+. ..+.+.||..|..-. ..-...++++|||.... ..+|++- ||-..+.+|.|.
T Consensus 117 ~ras-------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~ 181 (498)
T PRK13531 117 WKAG-------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQ 181 (498)
T ss_pred ccCC-------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCC
Confidence 7553 346677777763211 11122455666674432 3358988 997788888644
Q ss_pred CHHHHHHHHHH
Q 002337 823 DVSYRERVLKA 833 (934)
Q Consensus 823 ~~~~r~~Il~~ 833 (934)
+.++-.+|+..
T Consensus 182 ~~~~e~~lL~~ 192 (498)
T PRK13531 182 DKANFRSMLTS 192 (498)
T ss_pred chHHHHHHHHc
Confidence 45555666654
No 303
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.58 E-value=2.6e-07 Score=102.21 Aligned_cols=46 Identities=33% Similarity=0.509 Sum_probs=34.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC--CcEEEEecCccccccccch
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLG--IHVVEYSCHNLMASSERKT 441 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg--~~~~~I~~~~L~~~~~g~~ 441 (934)
.++++||.||||||||.||-++|++|| .+|..++++++.+.....+
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKT 96 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKT 96 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HH
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCch
Confidence 468899999999999999999999997 6899999887766543333
No 304
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.58 E-value=1.7e-08 Score=96.07 Aligned_cols=118 Identities=22% Similarity=0.311 Sum_probs=57.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEEecC-ccc-----cccccchHHHHHHHHHHhh-cCCCEEEEEcchhhcccc
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCH-NLM-----ASSERKTSAALAQAFNTAQ-SYSPTILLLRDFDVFRNL 471 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~I~~~-~L~-----~~~~g~~e~~L~~~f~~A~-~~~P~IL~IDEID~L~~~ 471 (934)
+|||.|+||+|||++++++|+.+|..|..|.+. +++ +...-.... ..|+..+ .--..|+++|||+...+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNrapp- 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRAPP- 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS-H-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccCCH-
Confidence 489999999999999999999999999999875 332 111000000 0000000 00125999999997655
Q ss_pred ccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-----CCChhhhcccc
Q 002337 472 VSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPTIRRCFS 545 (934)
Q Consensus 472 ~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~-----~Ld~aLrrrF~ 545 (934)
.+.+.|.+.+.... ............+++||||-|..+ .|+++++.||.
T Consensus 77 ---------------ktQsAlLeam~Er~----------Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 77 ---------------KTQSALLEAMEERQ----------VTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp ---------------HHHHHHHHHHHHSE----------EEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ---------------HHHHHHHHHHHcCe----------EEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 23333333332110 000011122366789999999876 48899988884
No 305
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.58 E-value=3.5e-07 Score=104.77 Aligned_cols=140 Identities=17% Similarity=0.266 Sum_probs=76.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCc-------EEEEec----Cccccccc-c-----chHHHHHHHHHHhhcC--CC
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIH-------VVEYSC----HNLMASSE-R-----KTSAALAQAFNTAQSY--SP 457 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~-------~~~I~~----~~L~~~~~-g-----~~e~~L~~~f~~A~~~--~P 457 (934)
+.+++|+||||||||++|+.+|..+... .+++.. .+++..+. + ...+.+.++...|+.. .|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 4569999999999999999999988431 222221 12222111 1 0112334455566543 58
Q ss_pred EEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCch-hhhhhhhcccEEEEEecCCCC--
Q 002337 458 TILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPV-KEIEKICRQQVLLVAAADSSE-- 534 (934)
Q Consensus 458 ~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~-~~~~~~~~~~ViVIatTn~~~-- 534 (934)
.+++||||+.-.. .....++. .+++................ .........++.+|||+|..+
T Consensus 274 ~vliIDEINRani-----------~kiFGel~----~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs 338 (459)
T PRK11331 274 YVFIIDEINRANL-----------SKVFGEVM----MLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRS 338 (459)
T ss_pred cEEEEehhhccCH-----------HHhhhhhh----hhccccccccccceeeeccccccccccCCCCeEEEEecCccccc
Confidence 9999999995432 01112222 22221100000000000000 011223468899999999987
Q ss_pred --CCChhhhcccceEEEcCC
Q 002337 535 --GLPPTIRRCFSHEISMGP 552 (934)
Q Consensus 535 --~Ld~aLrrrF~~eI~i~~ 552 (934)
.+|.|++|||. .+++.+
T Consensus 339 ~~~lD~AlrRRF~-fi~i~p 357 (459)
T PRK11331 339 LAVVDYALRRRFS-FIDIEP 357 (459)
T ss_pred hhhccHHHHhhhh-eEEecC
Confidence 59999999996 555553
No 306
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=6.7e-07 Score=107.47 Aligned_cols=164 Identities=19% Similarity=0.205 Sum_probs=103.8
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEec-C--------------------ccccccccc--hhhhhhHHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK-G--------------------PELINMYIG--ESEKNVRDIFQKAR 740 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~-~--------------------~~l~~~~~G--ese~~v~~lf~~A~ 740 (934)
+..+||+||+|+|||++|+++|+.++......+ + ++++..... -.-..+|++.+.++
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~ 125 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVR 125 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHH
Confidence 568999999999999999999998754321111 0 112111000 01234777877765
Q ss_pred hC----CCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceee
Q 002337 741 SA----RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLL 816 (934)
Q Consensus 741 ~~----~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i 816 (934)
.. ...|++|||+|.+. ....+.||..|+... ..+.+|.+|+.++.+.+.+++ |+ ..+
T Consensus 126 ~~P~~a~~KVvIIDEad~Ls-------------~~a~naLLKtLEePp---~~~~fIl~tte~~kll~tI~S--Rc-q~~ 186 (598)
T PRK09111 126 YRPVSARYKVYIIDEVHMLS-------------TAAFNALLKTLEEPP---PHVKFIFATTEIRKVPVTVLS--RC-QRF 186 (598)
T ss_pred hchhcCCcEEEEEEChHhCC-------------HHHHHHHHHHHHhCC---CCeEEEEEeCChhhhhHHHHh--he-eEE
Confidence 32 35699999999884 234567777776543 345566667777778888887 77 467
Q ss_pred eecCCCCHHHHHHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHHH
Q 002337 817 YVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADA 869 (934)
Q Consensus 817 ~v~~Pp~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~A 869 (934)
.|.. ++.++-..+++..+++.+..-+ ..+..+++.+ +.+..++.+++..+
T Consensus 187 ~f~~-l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a--~Gdlr~al~~Ldkl 237 (598)
T PRK09111 187 DLRR-IEADVLAAHLSRIAAKEGVEVEDEALALIARAA--EGSVRDGLSLLDQA 237 (598)
T ss_pred EecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 8874 6677777777777766544322 2355566663 44556666665544
No 307
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.5e-06 Score=100.54 Aligned_cols=179 Identities=12% Similarity=0.199 Sum_probs=102.5
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEE----------EEecC-----------
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVV----------EYSCH----------- 431 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~----------~I~~~----------- 431 (934)
+.+++.|...+.- -+.+..+||+||+|+||||+|+++|+.+...-. .-.|.
T Consensus 22 ~~~~~~L~~~~~~--------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 22 EHITRTIQNSLRM--------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred HHHHHHHHHHHHh--------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 3455555554431 134456899999999999999999999865210 00111
Q ss_pred ---ccc--cccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccc
Q 002337 432 ---NLM--ASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAED 502 (934)
Q Consensus 432 ---~L~--~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~ 502 (934)
++. ..........++++.+.+.. ....+++|||+|.+.. .....++ .+++.
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~---------------~~~~~LL-k~LEe---- 153 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI---------------AAFNAFL-KTLEE---- 153 (397)
T ss_pred CCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------------HHHHHHH-HHHhc----
Confidence 000 00011123455555444421 1236999999997753 1112222 22221
Q ss_pred cccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHH
Q 002337 503 EDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFV 582 (934)
Q Consensus 503 ~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L 582 (934)
....+++|.+|+.+..+.+.+++|+. .+++.++++++-...++..++.... .. ....+
T Consensus 154 -----------------p~~~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~~~g~---~i-~~~al 211 (397)
T PRK14955 154 -----------------PPPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPLEEIQQQLQGICEAEGI---SV-DADAL 211 (397)
T ss_pred -----------------CCCCeEEEEEeCChHHhHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCC---CC-CHHHH
Confidence 13455666676777888888988875 7889999998888888776653321 12 23445
Q ss_pred HHHHhhcCCCChHHHHHHHH
Q 002337 583 KDIIGQTSGFMPRDLHALVA 602 (934)
Q Consensus 583 ~~la~~t~Gfv~~DL~~L~~ 602 (934)
+.++..+.| ..+++..+++
T Consensus 212 ~~l~~~s~g-~lr~a~~~L~ 230 (397)
T PRK14955 212 QLIGRKAQG-SMRDAQSILD 230 (397)
T ss_pred HHHHHHcCC-CHHHHHHHHH
Confidence 666666654 3333333333
No 308
>PRK04132 replication factor C small subunit; Provisional
Probab=98.55 E-value=8.8e-07 Score=109.12 Aligned_cols=149 Identities=15% Similarity=0.167 Sum_probs=107.4
Q ss_pred CceEEEEC--CCCCcHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHhhcCC------CEEEEEc
Q 002337 397 RVAVLLHG--LPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYS------PTILLLR 463 (934)
Q Consensus 397 ~~~VLL~G--ppGtGKTtLaralA~el-----g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~------P~IL~ID 463 (934)
+-.-+..| |++.||||+|+++|+++ +.+++++|+++-. ....+++....+.... ..|++||
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 33456668 99999999999999998 5679999998632 2345666655443222 2699999
Q ss_pred chhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcc
Q 002337 464 DFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRC 543 (934)
Q Consensus 464 EID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrr 543 (934)
|+|.|.. .....|.+.++. ....+.+|.+||.+..+.+.+++|
T Consensus 638 EaD~Lt~----------------~AQnALLk~lEe---------------------p~~~~~FILi~N~~~kIi~tIrSR 680 (846)
T PRK04132 638 EADALTQ----------------DAQQALRRTMEM---------------------FSSNVRFILSCNYSSKIIEPIQSR 680 (846)
T ss_pred CcccCCH----------------HHHHHHHHHhhC---------------------CCCCeEEEEEeCChhhCchHHhhh
Confidence 9998864 223444455442 146788999999999999999999
Q ss_pred cceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCC
Q 002337 544 FSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFM 593 (934)
Q Consensus 544 F~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv 593 (934)
+. .+.|++|+.++....++..+.+... .. .+..+..++..+.|=.
T Consensus 681 C~-~i~F~~ls~~~i~~~L~~I~~~Egi---~i-~~e~L~~Ia~~s~GDl 725 (846)
T PRK04132 681 CA-IFRFRPLRDEDIAKRLRYIAENEGL---EL-TEEGLQAILYIAEGDM 725 (846)
T ss_pred ce-EEeCCCCCHHHHHHHHHHHHHhcCC---CC-CHHHHHHHHHHcCCCH
Confidence 84 9999999999998888877654321 12 2456778887777643
No 309
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.55 E-value=2e-06 Score=96.63 Aligned_cols=46 Identities=20% Similarity=0.376 Sum_probs=38.4
Q ss_pred cccEEEEEecCCCC-CCChhhhcccceEEEcCCCCH-HHHHHHHHHhc
Q 002337 521 RQQVLLVAAADSSE-GLPPTIRRCFSHEISMGPLTE-QQRVEMLSQLL 566 (934)
Q Consensus 521 ~~~ViVIatTn~~~-~Ld~aLrrrF~~eI~i~~Pde-~~R~~IL~~ll 566 (934)
..++++|++.|..+ .+++++..||.-.+.++.|+. ++|.+|++...
T Consensus 172 ~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 172 PARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred CCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhh
Confidence 45788999988655 599999999999999999986 89999998743
No 310
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.55 E-value=1.1e-06 Score=103.13 Aligned_cols=142 Identities=23% Similarity=0.367 Sum_probs=85.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhh--------cCCCEEEEEcchhhcc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQ--------SYSPTILLLRDFDVFR 469 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~--------~~~P~IL~IDEID~L~ 469 (934)
+-+||+||||-||||||+.+|+..|..+++||.++- .+...++..+..|- ...|..++|||||--.
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDe------Rt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDE------RTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEeccccc------ccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc
Confidence 457999999999999999999999999999999862 23333333332222 2469999999999211
Q ss_pred ccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhh-hhhhhcc---cEEEEEecCCCCCCChhhhc--c
Q 002337 470 NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKE-IEKICRQ---QVLLVAAADSSEGLPPTIRR--C 543 (934)
Q Consensus 470 ~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~-~~~~~~~---~ViVIatTn~~~~Ld~aLrr--r 543 (934)
.....+|..++... ..+..|...-.. ..+..+. .--+|+.||... -|+||. .
T Consensus 401 ----------------~~~Vdvilslv~a~----~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~ 458 (877)
T KOG1969|consen 401 ----------------RAAVDVILSLVKAT----NKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRP 458 (877)
T ss_pred ----------------HHHHHHHHHHHHhh----cchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhccc
Confidence 12222333332210 000001000000 0011111 124788888765 577765 5
Q ss_pred cceEEEcCCCCHHHHHHHHHHhcc
Q 002337 544 FSHEISMGPLTEQQRVEMLSQLLQ 567 (934)
Q Consensus 544 F~~eI~i~~Pde~~R~~IL~~ll~ 567 (934)
|...+.|.+|.+....+-|+..+.
T Consensus 459 ~A~ii~f~~p~~s~Lv~RL~~IC~ 482 (877)
T KOG1969|consen 459 FAEIIAFVPPSQSRLVERLNEICH 482 (877)
T ss_pred ceEEEEecCCChhHHHHHHHHHHh
Confidence 888999999999877766666554
No 311
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.9e-06 Score=102.21 Aligned_cols=161 Identities=17% Similarity=0.199 Sum_probs=95.6
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEE----------ecC--------------ccccccccchh---hhhhHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLS----------VKG--------------PELINMYIGES---EKNVRDIF 736 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~----------v~~--------------~~l~~~~~Ges---e~~v~~lf 736 (934)
+..+||+||+|||||++|+++|+.+...-.. -.| .++ ..+.|.+ -..++++.
T Consensus 38 ~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~-~~~d~~s~~~vd~Ir~l~ 116 (620)
T PRK14954 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNI-SEFDAASNNSVDDIRQLR 116 (620)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCe-EEecccccCCHHHHHHHH
Confidence 4569999999999999999999987552100 000 011 0112222 23456665
Q ss_pred HHHH----hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCc
Q 002337 737 QKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRF 812 (934)
Q Consensus 737 ~~A~----~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRf 812 (934)
+.+. .....|++|||+|.+.. ...+.||..|+... ..+++|.+|+.++.|-+.+.+ |.
T Consensus 117 e~~~~~P~~~~~KVvIIdEad~Lt~-------------~a~naLLK~LEePp---~~tv~IL~t~~~~kLl~TI~S--Rc 178 (620)
T PRK14954 117 ENVRYGPQKGRYRVYIIDEVHMLST-------------AAFNAFLKTLEEPP---PHAIFIFATTELHKIPATIAS--RC 178 (620)
T ss_pred HHHHhhhhcCCCEEEEEeChhhcCH-------------HHHHHHHHHHhCCC---CCeEEEEEeCChhhhhHHHHh--hc
Confidence 5542 23346999999998841 23566777777643 334555556667888888887 65
Q ss_pred ceeeeecCCCCHHHHHHHHHHHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHH
Q 002337 813 DKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCA 867 (934)
Q Consensus 813 d~~i~v~~Pp~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~ 867 (934)
..+.|.. ++.++-..+++...++.+.. .+..+..++..+ |.+.+++.+.+.
T Consensus 179 -~~vef~~-l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s--~Gdlr~al~eLe 230 (620)
T PRK14954 179 -QRFNFKR-IPLDEIQSQLQMICRAEGIQIDADALQLIARKA--QGSMRDAQSILD 230 (620)
T ss_pred -eEEecCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 4677774 66666666666666554431 223356677763 334444444443
No 312
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=2.3e-06 Score=103.51 Aligned_cols=173 Identities=14% Similarity=0.218 Sum_probs=105.5
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcE-------------------------EE
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHV-------------------------VE 427 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~-------------------------~~ 427 (934)
+.+++.|...+..- +.+..+||+||+|+||||+++++|+.++... ++
T Consensus 22 ~~~~~~L~~~i~~~--------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~ 93 (585)
T PRK14950 22 EHVVQTLRNAIAEG--------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIE 93 (585)
T ss_pred HHHHHHHHHHHHhC--------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEE
Confidence 45566665554321 2345589999999999999999999985321 11
Q ss_pred EecCccccccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCcccc
Q 002337 428 YSCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDE 503 (934)
Q Consensus 428 I~~~~L~~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~ 503 (934)
++.. .......++++.+.+.. ....|++|||+|.|.. .....++ .+++.
T Consensus 94 i~~~------~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~---------------~a~naLL-k~LEe----- 146 (585)
T PRK14950 94 MDAA------SHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST---------------AAFNALL-KTLEE----- 146 (585)
T ss_pred Eecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH---------------HHHHHHH-HHHhc-----
Confidence 1111 11223345555444332 2346999999997753 1122222 33221
Q ss_pred ccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHH
Q 002337 504 DEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVK 583 (934)
Q Consensus 504 ~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~ 583 (934)
....+++|.+++..+.+.+.+++|+. .+.+..++..+...+++..++.... ..+ ...+.
T Consensus 147 ----------------pp~~tv~Il~t~~~~kll~tI~SR~~-~i~f~~l~~~el~~~L~~~a~~egl---~i~-~eal~ 205 (585)
T PRK14950 147 ----------------PPPHAIFILATTEVHKVPATILSRCQ-RFDFHRHSVADMAAHLRKIAAAEGI---NLE-PGALE 205 (585)
T ss_pred ----------------CCCCeEEEEEeCChhhhhHHHHhccc-eeeCCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHH
Confidence 13456677777788888888988875 7899999999998888877654322 122 34466
Q ss_pred HHHhhcCCCChHHHHHHHH
Q 002337 584 DIIGQTSGFMPRDLHALVA 602 (934)
Q Consensus 584 ~la~~t~Gfv~~DL~~L~~ 602 (934)
.++..+.| ..+++..+++
T Consensus 206 ~La~~s~G-dlr~al~~Le 223 (585)
T PRK14950 206 AIARAATG-SMRDAENLLQ 223 (585)
T ss_pred HHHHHcCC-CHHHHHHHHH
Confidence 67766655 5555555544
No 313
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.53 E-value=9.5e-07 Score=106.61 Aligned_cols=134 Identities=19% Similarity=0.252 Sum_probs=91.9
Q ss_pred CcceecCCCCCcchHHHHHHHHHcCC--cEEEecCccccccccchhh--hhhH--------HHHHHHHhCCCcEEEeccc
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECSL--NFLSVKGPELINMYIGESE--KNVR--------DIFQKARSARPCVIFFDEL 752 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~~--~~i~v~~~~l~~~~~Gese--~~v~--------~lf~~A~~~~p~vlfiDEi 752 (934)
.+|||.|+||||||++|++++..+.. +|+.+.....-...+|.-. ..++ -++.+ ....+||+||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~---A~~GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDE---APRGVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeee---CCCCcEeccch
Confidence 58999999999999999999998754 5887775333333344310 0000 01111 22359999999
Q ss_pred cccccCCCCCCCCchhHHHHHHhhhhhccCC---------cC-CCCCEEEEEEcCCCC---CCChhhhCCCCcceeeeec
Q 002337 753 DSLAPARGASGDSGGVMDRVVSQMLAEIDGL---------ND-SSQDLFIIGASNRPD---LIDPALLRPGRFDKLLYVG 819 (934)
Q Consensus 753 d~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~---------~~-~~~~v~vI~aTNrp~---~lD~allrpGRfd~~i~v~ 819 (934)
+.+.+ .+.+.|+..|+.- .. ...++.||+|+|..+ .+.++|+. ||+..+.+.
T Consensus 94 ~rl~~-------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~ 158 (589)
T TIGR02031 94 NLLDD-------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE 158 (589)
T ss_pred hhCCH-------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence 98852 3556666655421 10 124689999999875 68899999 999998888
Q ss_pred CCCCHHHHHHHHHHHHh
Q 002337 820 VNSDVSYRERVLKALTR 836 (934)
Q Consensus 820 ~Pp~~~~r~~Il~~~~~ 836 (934)
.+++.++|.+|++....
T Consensus 159 ~~~~~~er~eil~~~~~ 175 (589)
T TIGR02031 159 DVASQDLRVEIVRRERC 175 (589)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 77788889999887663
No 314
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.53 E-value=1.4e-06 Score=97.79 Aligned_cols=76 Identities=21% Similarity=0.418 Sum_probs=55.0
Q ss_pred CcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhcc---------CCc-CCCCCEEEEEEcCCCC-CCChhhhCCCCc
Q 002337 744 PCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEID---------GLN-DSSQDLFIIGASNRPD-LIDPALLRPGRF 812 (934)
Q Consensus 744 p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ld---------g~~-~~~~~v~vI~aTNrp~-~lD~allrpGRf 812 (934)
..+||+||++.+.+ .+.+.|+..|+ |.. ....++++|+++|..+ .+.++++. ||
T Consensus 132 ~GvL~lDEi~~L~~-------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf 196 (337)
T TIGR02030 132 RGILYIDEVNLLED-------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RF 196 (337)
T ss_pred CCEEEecChHhCCH-------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hc
Confidence 35999999998742 34445555443 211 1234688898888655 68899999 99
Q ss_pred ceeeeecCCCCHHHHHHHHHHH
Q 002337 813 DKLLYVGVNSDVSYRERVLKAL 834 (934)
Q Consensus 813 d~~i~v~~Pp~~~~r~~Il~~~ 834 (934)
...+.++.|.+.++|.+|++..
T Consensus 197 ~l~i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 197 GLHAEIRTVRDVELRVEIVERR 218 (337)
T ss_pred ceEEECCCCCCHHHHHHHHHhh
Confidence 9999999866668899998764
No 315
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.51 E-value=9.1e-07 Score=105.32 Aligned_cols=136 Identities=21% Similarity=0.226 Sum_probs=84.9
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHcCCc-EEEe---cCccccc-----cccchhhhhhHHHHHHHHhCCCcEEEeccc
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATECSLN-FLSV---KGPELIN-----MYIGESEKNVRDIFQKARSARPCVIFFDEL 752 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~~~~-~i~v---~~~~l~~-----~~~Gese~~v~~lf~~A~~~~p~vlfiDEi 752 (934)
+...++||+|+||||||++|++++...... |... ++..+.. ...|+..-. ...+.. +...++++||+
T Consensus 234 r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~-~G~l~~---A~~Gil~iDEi 309 (509)
T smart00350 234 RGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLE-GGALVL---ADNGVCCIDEF 309 (509)
T ss_pred cccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEec-CccEEe---cCCCEEEEech
Confidence 334689999999999999999999876543 3321 1111211 111110000 001112 23459999999
Q ss_pred cccccCCCCCCCCchhHHHHHHhhhhhccC---------Cc-CCCCCEEEEEEcCCCC-------------CCChhhhCC
Q 002337 753 DSLAPARGASGDSGGVMDRVVSQMLAEIDG---------LN-DSSQDLFIIGASNRPD-------------LIDPALLRP 809 (934)
Q Consensus 753 d~l~~~r~~~~~~~~~~~~v~~~lL~~ldg---------~~-~~~~~v~vI~aTNrp~-------------~lD~allrp 809 (934)
|.+.+ .....|+..|+. .. .-..++.||||+|..+ .|++++++
T Consensus 310 ~~l~~-------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs- 375 (509)
T smart00350 310 DKMDD-------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS- 375 (509)
T ss_pred hhCCH-------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC-
Confidence 99853 233334444432 11 0124689999999753 58999999
Q ss_pred CCcceeeeecCCCCHHHHHHHHHHHHh
Q 002337 810 GRFDKLLYVGVNSDVSYRERVLKALTR 836 (934)
Q Consensus 810 GRfd~~i~v~~Pp~~~~r~~Il~~~~~ 836 (934)
|||-.+.+.-+|+.+...+|.+..+.
T Consensus 376 -RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 376 -RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred -ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99988777556899999999887654
No 316
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=1e-06 Score=103.93 Aligned_cols=161 Identities=18% Similarity=0.186 Sum_probs=101.9
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC------------------------cEEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL------------------------NFLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~------------------------~~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+..+|||||+|+|||++|+++|+.+.. .++.+++..- . .-..++++.+.+
T Consensus 36 ~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~----~--gId~IRelie~~ 109 (535)
T PRK08451 36 AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASN----R--GIDDIRELIEQT 109 (535)
T ss_pred CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccc----c--CHHHHHHHHHHH
Confidence 345699999999999999999987631 1222222110 0 123466666543
Q ss_pred Hh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 RS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
.. ....|++|||+|.+. ....+.||..|+... ..+.+|.+|+.+..|.+++++ |. ..
T Consensus 110 ~~~P~~~~~KVvIIDEad~Lt-------------~~A~NALLK~LEEpp---~~t~FIL~ttd~~kL~~tI~S--Rc-~~ 170 (535)
T PRK08451 110 KYKPSMARFKIFIIDEVHMLT-------------KEAFNALLKTLEEPP---SYVKFILATTDPLKLPATILS--RT-QH 170 (535)
T ss_pred hhCcccCCeEEEEEECcccCC-------------HHHHHHHHHHHhhcC---CceEEEEEECChhhCchHHHh--hc-ee
Confidence 32 223599999998884 235667777777652 345555566778899999998 85 57
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCCc-CCCHHHHHhhCCCCCCHHHHHHHHHHHHHH
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLLE-DVSLYSIAKKCPPNFTGADMYALCADAWFH 872 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~~t~g~sgaDl~~l~~~A~~~ 872 (934)
++|.. ++.++-...++..+++.++.- +..+..+++. .+-+.+++.+++..|...
T Consensus 171 ~~F~~-Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~--s~GdlR~alnlLdqai~~ 225 (535)
T PRK08451 171 FRFKQ-IPQNSIISHLKTILEKEGVSYEPEALEILARS--GNGSLRDTLTLLDQAIIY 225 (535)
T ss_pred EEcCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHHh
Confidence 78874 566666666666666544322 2335666766 244667777777665543
No 317
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1.9e-07 Score=103.09 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=42.6
Q ss_pred CCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccc-------cCCCCchHHHHHHHhhcCC---CChHHH
Q 002337 534 EGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSEL-------TSDTGSEEFVKDIIGQTSG---FMPRDL 597 (934)
Q Consensus 534 ~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l-------~~d~~~~~~L~~la~~t~G---fv~~DL 597 (934)
.++++.+..|-...++.+ ++.|..+.+.++-.+..+ |+|.....||.++.+-... .++||-
T Consensus 399 LGFskEMQ~rPt~kFSGG---WRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQ 469 (807)
T KOG0066|consen 399 LGFSKEMQERPTTKFSGG---WRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQ 469 (807)
T ss_pred cCCChhHhcCCccccCCc---eeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEeccc
Confidence 457788888877788888 999999999887555433 5666667788877655432 455553
No 318
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.49 E-value=2.6e-07 Score=103.27 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=31.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+++.-+.|.|+||.||||.++.+|+++-+++...+.
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~ 133 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYED 133 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCC
Confidence 455669999999999999999999999888887665
No 319
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.49 E-value=4e-06 Score=91.31 Aligned_cols=210 Identities=14% Similarity=0.158 Sum_probs=123.5
Q ss_pred CCcCCchHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhC---------CcEEEEecCccc---
Q 002337 367 DFVPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLG---------IHVVEYSCHNLM--- 434 (934)
Q Consensus 367 ~~~~~~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg---------~~~~~I~~~~L~--- 434 (934)
-|+++.. ..+.|..+...+-+|... ...++||+|++|.|||++++..+..-. .+++.+..+.-.
T Consensus 35 rWIgY~~-A~~~L~~L~~Ll~~P~~~---Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 35 RWIGYPR-AKEALDRLEELLEYPKRH---RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred CeecCHH-HHHHHHHHHHHHhCCccc---CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 3445442 233343433334455322 234699999999999999999997652 355666554211
Q ss_pred -----------ccc-ccc-hHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCcc
Q 002337 435 -----------ASS-ERK-TSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAE 501 (934)
Q Consensus 435 -----------~~~-~g~-~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~ 501 (934)
..+ ... ....-.++....+...+-+|+|||++.+.... .....++..+|+.+...+
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs---------~~~qr~~Ln~LK~L~NeL-- 179 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS---------YRKQREFLNALKFLGNEL-- 179 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc---------HHHHHHHHHHHHHHhhcc--
Confidence 111 111 22223344556667789999999999876411 122456777777664322
Q ss_pred ccccccCCCCchhhhhhhhcccEEEEEecCCC--CCCChhhhcccceEEEcCCCCH-HHHHHHHHHhccccccc-cCCCC
Q 002337 502 DEDEESHGYFPVKEIEKICRQQVLLVAAADSS--EGLPPTIRRCFSHEISMGPLTE-QQRVEMLSQLLQPVSEL-TSDTG 577 (934)
Q Consensus 502 ~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~--~~Ld~aLrrrF~~eI~i~~Pde-~~R~~IL~~ll~~~~~l-~~d~~ 577 (934)
.-+++.+||-.-. -.-|+.+.+||. .+.+|.... ++-..++..+-+..+.- ..+..
T Consensus 180 -------------------~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~ 239 (302)
T PF05621_consen 180 -------------------QIPIVGVGTREAYRALRTDPQLASRFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLA 239 (302)
T ss_pred -------------------CCCeEEeccHHHHHHhccCHHHHhccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCC
Confidence 4556666665322 224788888996 566665322 23344555554433321 22344
Q ss_pred chHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh
Q 002337 578 SEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKS 612 (934)
Q Consensus 578 ~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r~ 612 (934)
.......+-..+.|.+| ++..|+..|+..|++..
T Consensus 240 ~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 240 SPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSG 273 (302)
T ss_pred CHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcC
Confidence 44555677777887776 78899999999998754
No 320
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=3.8e-06 Score=101.25 Aligned_cols=155 Identities=12% Similarity=0.196 Sum_probs=93.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEE----------EecC------cccc-------cccc---chHHHHHHH
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE----------YSCH------NLMA-------SSER---KTSAALAQA 448 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~~~~~----------I~~~------~L~~-------~~~g---~~e~~L~~~ 448 (934)
+.+.++||+||+||||||+|+++|+.+...-.. -.|. .+.. ...+ .....++.+
T Consensus 36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l 115 (620)
T PRK14954 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQL 115 (620)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHH
Confidence 344568999999999999999999999652100 0111 0000 0011 123445555
Q ss_pred HHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccE
Q 002337 449 FNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQV 524 (934)
Q Consensus 449 f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~V 524 (934)
.+.+.. ...-|++|||+|.+.. .. ...|..+++. ....+
T Consensus 116 ~e~~~~~P~~~~~KVvIIdEad~Lt~---------------~a-~naLLK~LEe---------------------Pp~~t 158 (620)
T PRK14954 116 RENVRYGPQKGRYRVYIIDEVHMLST---------------AA-FNAFLKTLEE---------------------PPPHA 158 (620)
T ss_pred HHHHHhhhhcCCCEEEEEeChhhcCH---------------HH-HHHHHHHHhC---------------------CCCCe
Confidence 444421 1246999999997753 11 2223333331 13456
Q ss_pred EEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC
Q 002337 525 LLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (934)
Q Consensus 525 iVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G 591 (934)
++|.+|+.+..|.+.+++|.. .+.+..++..+....++..++.... .++ ...++.++..+.|
T Consensus 159 v~IL~t~~~~kLl~TI~SRc~-~vef~~l~~~ei~~~L~~i~~~egi---~I~-~eal~~La~~s~G 220 (620)
T PRK14954 159 IFIFATTELHKIPATIASRCQ-RFNFKRIPLDEIQSQLQMICRAEGI---QID-ADALQLIARKAQG 220 (620)
T ss_pred EEEEEeCChhhhhHHHHhhce-EEecCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHhCC
Confidence 666677778889999998884 8999999999888777766543321 122 3345666666654
No 321
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=3.6e-06 Score=94.50 Aligned_cols=133 Identities=16% Similarity=0.241 Sum_probs=88.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcE--EEEec--------------Ccccc---cc--ccchHHHHHHHHHHhh
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHV--VEYSC--------------HNLMA---SS--ERKTSAALAQAFNTAQ 453 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~~~--~~I~~--------------~~L~~---~~--~g~~e~~L~~~f~~A~ 453 (934)
+.+..+||+||+|+|||++|+++|+.+...- ..-.| +++.. .. ..-....+|++.+.+.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~ 99 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVV 99 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHh
Confidence 4456799999999999999999999984310 00001 11111 00 1123456666655544
Q ss_pred c----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEe
Q 002337 454 S----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAA 529 (934)
Q Consensus 454 ~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIat 529 (934)
. ...-|++||++|.+.. .....+|+.+-+ ...++++|.+
T Consensus 100 ~~~~~~~~kv~iI~~a~~m~~---------------~aaNaLLK~LEE----------------------Pp~~~~fiL~ 142 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMNR---------------NAANALLKSLEE----------------------PSGDTVLLLI 142 (328)
T ss_pred hccccCCCeEEEECChhhCCH---------------HHHHHHHHHHhC----------------------CCCCeEEEEE
Confidence 2 2346889999998764 122333433322 1567888899
Q ss_pred cCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHh
Q 002337 530 ADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQL 565 (934)
Q Consensus 530 Tn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~l 565 (934)
|++++.+.|.+++|+. .+.+++|+.++-.+.++..
T Consensus 143 t~~~~~ll~TI~SRc~-~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 143 SHQPSRLLPTIKSRCQ-QQACPLPSNEESLQWLQQA 177 (328)
T ss_pred ECChhhCcHHHHhhce-eeeCCCcCHHHHHHHHHHh
Confidence 9999999999999996 7999999999888777754
No 322
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=5.1e-07 Score=100.28 Aligned_cols=98 Identities=19% Similarity=0.285 Sum_probs=70.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcccc-ccccch-HHHHHHHHHHhhc----CCCEEEEEcchhhcccc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA-SSERKT-SAALAQAFNTAQS----YSPTILLLRDFDVFRNL 471 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~-~~~g~~-e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~ 471 (934)
.+|||.||+|+|||.|++.+|+-++.+|...+|..|.. .|.|+. +..+..++..|.. .+-+|+||||+|.|..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 46999999999999999999999999999999998875 556654 5566777766652 35689999999999854
Q ss_pred ccCCCCCCccccchHHHHHHHHHhcC
Q 002337 472 VSNESLPNDQVGLSSEVASVIREFTE 497 (934)
Q Consensus 472 ~~~~~~~~d~~~~~~ev~~~L~~ll~ 497 (934)
...-+..+|-. .+-|.+.|..+++
T Consensus 307 ~~~i~~~RDVs--GEGVQQaLLKllE 330 (564)
T KOG0745|consen 307 AESIHTSRDVS--GEGVQQALLKLLE 330 (564)
T ss_pred Ccccccccccc--chhHHHHHHHHhc
Confidence 32222222222 2335555555544
No 323
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.47 E-value=1.4e-06 Score=97.47 Aligned_cols=125 Identities=18% Similarity=0.246 Sum_probs=85.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhC------------------------CcEEEEecCccccccccchHHHHHHHHHHhhc
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLG------------------------IHVVEYSCHNLMASSERKTSAALAQAFNTAQS 454 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg------------------------~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~ 454 (934)
.+||+||||+|||++|.++|+++. ..+++++.++..... .....++++-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 589999999999999999999997 567777776533211 133445554443332
Q ss_pred ----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEec
Q 002337 455 ----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA 530 (934)
Q Consensus 455 ----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatT 530 (934)
...-+++|||+|.+.. .....+...++. ......+|.+|
T Consensus 104 ~~~~~~~kviiidead~mt~----------------~A~nallk~lEe---------------------p~~~~~~il~~ 146 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE----------------DAANALLKTLEE---------------------PPKNTRFILIT 146 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH----------------HHHHHHHHHhcc---------------------CCCCeEEEEEc
Confidence 2357999999998865 223333344332 25677889999
Q ss_pred CCCCCCChhhhcccceEEEcCCCCHHHHHHHHH
Q 002337 531 DSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLS 563 (934)
Q Consensus 531 n~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~ 563 (934)
|.+..+-+.+++|+. .+.+.+|+...+...++
T Consensus 147 n~~~~il~tI~SRc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 147 NDPSKILPTIRSRCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred CChhhccchhhhcce-eeecCCchHHHHHHHhh
Confidence 999999999999885 78888755554444443
No 324
>PRK04132 replication factor C small subunit; Provisional
Probab=98.47 E-value=1.7e-06 Score=106.67 Aligned_cols=143 Identities=18% Similarity=0.170 Sum_probs=100.8
Q ss_pred CCcceecC--CCCCcchHHHHHHHHHc-----CCcEEEecCccccccccchhhhhhHHHHHHHHhCC------CcEEEec
Q 002337 684 RSGVLLYG--PPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESEKNVRDIFQKARSAR------PCVIFFD 750 (934)
Q Consensus 684 ~~~iLl~G--ppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~------p~vlfiD 750 (934)
+-+-+..| |++.|||++|+++|+++ +.+++.+++++-.+ -..+|++.+.+.... ..|++||
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 34556678 99999999999999997 56899999987422 135666666544322 3699999
Q ss_pred cccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHH
Q 002337 751 ELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERV 830 (934)
Q Consensus 751 Eid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~I 830 (934)
|+|.+.. ...+.|+..|+.. ..++.+|.+||.+..+-+++++ |+ ..+.|+. ++.++-...
T Consensus 638 EaD~Lt~-------------~AQnALLk~lEep---~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~-ls~~~i~~~ 697 (846)
T PRK04132 638 EADALTQ-------------DAQQALRRTMEMF---SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRP-LRDEDIAKR 697 (846)
T ss_pred CcccCCH-------------HHHHHHHHHhhCC---CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCC-CCHHHHHHH
Confidence 9999952 2456677777654 3467888899999999999998 86 5778874 666666666
Q ss_pred HHHHHhcCCCC-cCCCHHHHHhh
Q 002337 831 LKALTRKFKLL-EDVSLYSIAKK 852 (934)
Q Consensus 831 l~~~~~~~~~~-~~~~l~~la~~ 852 (934)
++...++.++. ++..+..++..
T Consensus 698 L~~I~~~Egi~i~~e~L~~Ia~~ 720 (846)
T PRK04132 698 LRYIAENEGLELTEEGLQAILYI 720 (846)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHH
Confidence 66666544332 23346666666
No 325
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.47 E-value=2.1e-06 Score=89.18 Aligned_cols=138 Identities=23% Similarity=0.395 Sum_probs=99.8
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccchhhhhhHHHHHHHHhC-CCcEEEeccccccccC
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSA-RPCVIFFDELDSLAPA 758 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~-~p~vlfiDEid~l~~~ 758 (934)
+..++||+|..||||++++||+-+++ +..++.|+-.+| ..+-.+++..+.. ..-|||.|++-
T Consensus 84 pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl---------~~Lp~l~~~Lr~~~~kFIlFcDDLS----- 149 (287)
T COG2607 84 PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL---------ATLPDLVELLRARPEKFILFCDDLS----- 149 (287)
T ss_pred cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH---------hhHHHHHHHHhcCCceEEEEecCCC-----
Confidence 46799999999999999999998776 567889988777 3455666666654 34699999862
Q ss_pred CCCCCCCchhHHHHHHhhhhhcc-CCcCCCCCEEEEEEcCCCCCCChhh--------------------hCCCCcceeee
Q 002337 759 RGASGDSGGVMDRVVSQMLAEID-GLNDSSQDLFIIGASNRPDLIDPAL--------------------LRPGRFDKLLY 817 (934)
Q Consensus 759 r~~~~~~~~~~~~v~~~lL~~ld-g~~~~~~~v~vI~aTNrp~~lD~al--------------------lrpGRfd~~i~ 817 (934)
-+.+...-+.+... || |+.....+|+|.+|+||-..|.+-+ -=..||--.+-
T Consensus 150 ----Fe~gd~~yK~LKs~---LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~ 222 (287)
T COG2607 150 ----FEEGDDAYKALKSA---LEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLS 222 (287)
T ss_pred ----CCCCchHHHHHHHH---hcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeec
Confidence 12222222333333 44 3455567999999999987665321 11348888899
Q ss_pred ecCCCCHHHHHHHHHHHHhcCCCCc
Q 002337 818 VGVNSDVSYRERVLKALTRKFKLLE 842 (934)
Q Consensus 818 v~~Pp~~~~r~~Il~~~~~~~~~~~ 842 (934)
|+ |++.+....|...+.+++.++-
T Consensus 223 F~-~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 223 FY-PCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred cc-CCCHHHHHHHHHHHHHHcCCCC
Confidence 98 6999999999999999887754
No 326
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.46 E-value=2.2e-06 Score=101.08 Aligned_cols=120 Identities=23% Similarity=0.311 Sum_probs=70.2
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCC----------------------------cEEEecCccccccccchhhhhhHH
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSL----------------------------NFLSVKGPELINMYIGESEKNVRD 734 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~----------------------------~~i~v~~~~l~~~~~Gese~~v~~ 734 (934)
.+.+++|+||||||||+++++++..+.. +|.....+......+|.....-..
T Consensus 210 ~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG 289 (499)
T TIGR00368 210 GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPG 289 (499)
T ss_pred CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchh
Confidence 4578999999999999999999864311 111111110000111111000011
Q ss_pred HHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCc----------CCCCCEEEEEEcCCC-----
Q 002337 735 IFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN----------DSSQDLFIIGASNRP----- 799 (934)
Q Consensus 735 lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~----------~~~~~v~vI~aTNrp----- 799 (934)
.+..| ...+|||||++.+. ..++..|+..|+.-. ....++.+|+|+|.-
T Consensus 290 ~i~lA---~~GvLfLDEi~e~~-------------~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~ 353 (499)
T TIGR00368 290 EISLA---HNGVLFLDELPEFK-------------RSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHY 353 (499)
T ss_pred hhhcc---CCCeEecCChhhCC-------------HHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcC
Confidence 23333 33599999999874 234455554443211 112468999999962
Q ss_pred -C-----------------CCChhhhCCCCcceeeeecC
Q 002337 800 -D-----------------LIDPALLRPGRFDKLLYVGV 820 (934)
Q Consensus 800 -~-----------------~lD~allrpGRfd~~i~v~~ 820 (934)
+ .|...|+. |||-.+.++.
T Consensus 354 ~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~ 390 (499)
T TIGR00368 354 GGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPL 390 (499)
T ss_pred CCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcC
Confidence 1 47788888 9999999884
No 327
>PLN03073 ABC transporter F family; Provisional
Probab=98.45 E-value=5.1e-07 Score=111.23 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=44.8
Q ss_pred CCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCC-------CCchHHHHHHHhhcCC---CChHHHHHHH
Q 002337 535 GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSD-------TGSEEFVKDIIGQTSG---FMPRDLHALV 601 (934)
Q Consensus 535 ~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d-------~~~~~~L~~la~~t~G---fv~~DL~~L~ 601 (934)
++++....+....++.| +.+|..|.+.++.++..+..| .....|+.++.....+ ++.||+..+.
T Consensus 332 gl~~~~~~~~~~~LSgG---~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~ 405 (718)
T PLN03073 332 SFTPEMQVKATKTFSGG---WRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLN 405 (718)
T ss_pred CCChHHHhCchhhCCHH---HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence 34444555555689999 999999999999888766444 3335667666666544 6778877765
No 328
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.45 E-value=4.5e-06 Score=94.88 Aligned_cols=154 Identities=14% Similarity=0.255 Sum_probs=97.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---C--CcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---G--IHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLV 472 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g--~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~ 472 (934)
..++||||.|.|||.|+++++++. + +.++.++..+++..........-.+-|..- ++--+++||+++.+..+.
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~--y~~dlllIDDiq~l~gk~ 191 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEK--YSLDLLLIDDIQFLAGKE 191 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHh--hccCeeeechHhHhcCCh
Confidence 349999999999999999999987 2 345555554443322211111111122222 234589999999987621
Q ss_pred cCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCC---CChhhhcccce--E
Q 002337 473 SNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG---LPPTIRRCFSH--E 547 (934)
Q Consensus 473 ~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~---Ld~aLrrrF~~--e 547 (934)
+...++...++.+.+ .++-+|+.+-..|.. +.+.|++||.. .
T Consensus 192 ----------~~qeefFh~FN~l~~-----------------------~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~ 238 (408)
T COG0593 192 ----------RTQEEFFHTFNALLE-----------------------NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLV 238 (408)
T ss_pred ----------hHHHHHHHHHHHHHh-----------------------cCCEEEEEcCCCchhhccccHHHHHHHhceeE
Confidence 235677777776643 333455555555655 55899999876 6
Q ss_pred EEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcC
Q 002337 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTS 590 (934)
Q Consensus 548 I~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~ 590 (934)
+.+.+||.+.|.+||+........ .+ .++.+.-+|.+..
T Consensus 239 ~~I~~Pd~e~r~aiL~kka~~~~~---~i-~~ev~~~la~~~~ 277 (408)
T COG0593 239 VEIEPPDDETRLAILRKKAEDRGI---EI-PDEVLEFLAKRLD 277 (408)
T ss_pred EeeCCCCHHHHHHHHHHHHHhcCC---CC-CHHHHHHHHHHhh
Confidence 789999999999999986654433 12 1333455555543
No 329
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.44 E-value=7.4e-06 Score=85.22 Aligned_cols=185 Identities=17% Similarity=0.203 Sum_probs=116.4
Q ss_pred CcCCchHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccchHHH
Q 002337 368 FVPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAA 444 (934)
Q Consensus 368 ~~~~~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~~e~~ 444 (934)
..|.+ ..++.|...-..+... .+..+|||+|..|||||+|+|++-++. |..+++|+..++. .
T Consensus 62 l~Gvd-~qk~~L~~NT~~F~~G-----~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~---------~ 126 (287)
T COG2607 62 LVGVD-RQKEALVRNTEQFAEG-----LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA---------T 126 (287)
T ss_pred HhCch-HHHHHHHHHHHHHHcC-----CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh---------h
Confidence 33443 3445665554433332 345679999999999999999998887 6788999876544 3
Q ss_pred HHHHHHHhhc-CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhccc
Q 002337 445 LAQAFNTAQS-YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ 523 (934)
Q Consensus 445 L~~~f~~A~~-~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ 523 (934)
+..+++..+. ...-|+|.|++. +- ++ ..-.+.|+..++-. -.....+
T Consensus 127 Lp~l~~~Lr~~~~kFIlFcDDLS-Fe-----~g---------d~~yK~LKs~LeG~-----------------ve~rP~N 174 (287)
T COG2607 127 LPDLVELLRARPEKFILFCDDLS-FE-----EG---------DDAYKALKSALEGG-----------------VEGRPAN 174 (287)
T ss_pred HHHHHHHHhcCCceEEEEecCCC-CC-----CC---------chHHHHHHHHhcCC-----------------cccCCCe
Confidence 4455555443 245799999975 11 11 12234444444311 0123678
Q ss_pred EEEEEecCCCCCCChh----------------------hhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCC---c
Q 002337 524 VLLVAAADSSEGLPPT----------------------IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTG---S 578 (934)
Q Consensus 524 ViVIatTn~~~~Ld~a----------------------LrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~---~ 578 (934)
|++.||+|+..-|+.. +-.||.-.+.|.++++++-+.|..++++.... +.+ .
T Consensus 175 Vl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l---~~~~e~l 251 (287)
T COG2607 175 VLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGL---DISDEEL 251 (287)
T ss_pred EEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCC---CCCHHHH
Confidence 9999999987655421 22378889999999999999999999876543 332 1
Q ss_pred hHHHHHHHhhcCCCChHHHHHHHH
Q 002337 579 EEFVKDIIGQTSGFMPRDLHALVA 602 (934)
Q Consensus 579 ~~~L~~la~~t~Gfv~~DL~~L~~ 602 (934)
.....++|....|-+|+--.+.++
T Consensus 252 ~~eAl~WAt~rg~RSGR~A~QF~~ 275 (287)
T COG2607 252 HAEALQWATTRGGRSGRVAWQFIR 275 (287)
T ss_pred HHHHHHHHHhcCCCccHhHHHHHH
Confidence 222334555555666654444433
No 330
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.43 E-value=8.7e-07 Score=99.19 Aligned_cols=113 Identities=27% Similarity=0.391 Sum_probs=79.5
Q ss_pred cceecCCCCCcchHHHHHHHHHcC------------------------CcEEEecCccccccccchhhhhhHHHHHHHHh
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECS------------------------LNFLSVKGPELINMYIGESEKNVRDIFQKARS 741 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~------------------------~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~ 741 (934)
.+||+||||+|||++|.++|+.+. .+++.++.++....- -....++++-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 599999999999999999999876 478888876653321 122334444443322
Q ss_pred ----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeee
Q 002337 742 ----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLY 817 (934)
Q Consensus 742 ----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~ 817 (934)
....|++|||+|.+.. ...+.++..|+.. ..+..+|.+||.++.|-|-+.+ |. ..++
T Consensus 104 ~~~~~~~kviiidead~mt~-------------~A~nallk~lEep---~~~~~~il~~n~~~~il~tI~S--Rc-~~i~ 164 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE-------------DAANALLKTLEEP---PKNTRFILITNDPSKILPTIRS--RC-QRIR 164 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH-------------HHHHHHHHHhccC---CCCeEEEEEcCChhhccchhhh--cc-eeee
Confidence 3457999999999963 2445666665543 4567888899999988888877 65 3566
Q ss_pred ec
Q 002337 818 VG 819 (934)
Q Consensus 818 v~ 819 (934)
|+
T Consensus 165 f~ 166 (325)
T COG0470 165 FK 166 (325)
T ss_pred cC
Confidence 65
No 331
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=2.6e-06 Score=103.07 Aligned_cols=157 Identities=19% Similarity=0.234 Sum_probs=95.9
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCc-------------------------EEEecCccccccccchhhhhhHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLN-------------------------FLSVKGPELINMYIGESEKNVRDIFQK 738 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~-------------------------~i~v~~~~l~~~~~Gese~~v~~lf~~ 738 (934)
+..+||+||+|+|||++|+++|+.++.. ++.+++.. ...-..++++.+.
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~ 111 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIER 111 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHH
Confidence 3457999999999999999999886431 11121110 0112335555544
Q ss_pred HHh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcce
Q 002337 739 ARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDK 814 (934)
Q Consensus 739 A~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~ 814 (934)
+.. ....|++|||+|.+. ....+.||..|+... ..+++|.+|+.++.+.+.+++ |+.
T Consensus 112 ~~~~p~~~~~kVvIIDEa~~L~-------------~~a~naLLk~LEepp---~~tv~Il~t~~~~kll~tI~S--R~~- 172 (585)
T PRK14950 112 VQFRPALARYKVYIIDEVHMLS-------------TAAFNALLKTLEEPP---PHAIFILATTEVHKVPATILS--RCQ- 172 (585)
T ss_pred HhhCcccCCeEEEEEeChHhCC-------------HHHHHHHHHHHhcCC---CCeEEEEEeCChhhhhHHHHh--ccc-
Confidence 432 334699999999884 234566777777643 345555566667778888877 764
Q ss_pred eeeecCCCCHHHHHHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHH
Q 002337 815 LLYVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 815 ~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
.+.|.. ++..+...+++...++.++.-+ ..+..++..+ +.+..++.+.+..
T Consensus 173 ~i~f~~-l~~~el~~~L~~~a~~egl~i~~eal~~La~~s--~Gdlr~al~~Lek 224 (585)
T PRK14950 173 RFDFHR-HSVADMAAHLRKIAAAEGINLEPGALEAIARAA--TGSMRDAENLLQQ 224 (585)
T ss_pred eeeCCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 577774 6677777777776665543222 2255666663 3355555555443
No 332
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.42 E-value=2.4e-07 Score=101.23 Aligned_cols=145 Identities=21% Similarity=0.367 Sum_probs=87.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCc---EEEEecCccccccccchHHHHHHHHHHhh-----------cCCCEEEEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIH---VVEYSCHNLMASSERKTSAALAQAFNTAQ-----------SYSPTILLL 462 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~---~~~I~~~~L~~~~~g~~e~~L~~~f~~A~-----------~~~P~IL~I 462 (934)
+.++||+||+|||||++++..-..+... ...++++. ..+...++...+... ....+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~------~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSA------QTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-T------THHHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccC------CCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 4569999999999999999887766432 23344442 223333433332211 123479999
Q ss_pred cchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCC---CChh
Q 002337 463 RDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG---LPPT 539 (934)
Q Consensus 463 DEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~---Ld~a 539 (934)
||++.-.+ |..+. ....++|+++++. +||+.........-..+.+|||++...+ ++++
T Consensus 107 DDlN~p~~---------d~ygt-q~~iElLRQ~i~~---------~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R 167 (272)
T PF12775_consen 107 DDLNMPQP---------DKYGT-QPPIELLRQLIDY---------GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPR 167 (272)
T ss_dssp ETTT-S------------TTS---HHHHHHHHHHHC---------SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHH
T ss_pred cccCCCCC---------CCCCC-cCHHHHHHHHHHh---------cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChH
Confidence 99985433 22222 3456788888763 3444333333344567889999875432 7788
Q ss_pred hhcccceEEEcCCCCHHHHHHHHHHhcc
Q 002337 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQ 567 (934)
Q Consensus 540 LrrrF~~eI~i~~Pde~~R~~IL~~ll~ 567 (934)
+.|.|. .+.++.|+.+....|+..++.
T Consensus 168 ~~r~f~-i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 168 FLRHFN-ILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp HHTTEE-EEE----TCCHHHHHHHHHHH
T ss_pred HhhheE-EEEecCCChHHHHHHHHHHHh
Confidence 888885 999999999999999887765
No 333
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.41 E-value=3.3e-06 Score=94.70 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=39.0
Q ss_pred cccEEEEEecCCCC-CCChhhhcccceEEEcCCCCH-HHHHHHHHHhc
Q 002337 521 RQQVLLVAAADSSE-GLPPTIRRCFSHEISMGPLTE-QQRVEMLSQLL 566 (934)
Q Consensus 521 ~~~ViVIatTn~~~-~Ld~aLrrrF~~eI~i~~Pde-~~R~~IL~~ll 566 (934)
..++++++++|..+ .+++++..||...+.++.|.. ++|.+|++...
T Consensus 169 p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 169 PARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred CCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 45789999998655 489999999999999998877 89999998754
No 334
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.41 E-value=6e-08 Score=92.38 Aligned_cols=105 Identities=30% Similarity=0.485 Sum_probs=56.1
Q ss_pred cceecCCCCCcchHHHHHHHHHcCCcEEEecCc-ccc-ccccch-----hhhh----hHHHHHHHHhCCCcEEEeccccc
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP-ELI-NMYIGE-----SEKN----VRDIFQKARSARPCVIFFDELDS 754 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~-~l~-~~~~Ge-----se~~----v~~lf~~A~~~~p~vlfiDEid~ 754 (934)
++||.|+||+|||++|+++|...+..|..|.+. ++. +...|. .... -.-+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999888763 332 111121 1111 01122 14999999987
Q ss_pred cccCCCCCCCCchhHHHHHHhhhhhccC-------Cc-CCCCCEEEEEEcCCCC-----CCChhhhCCCCc
Q 002337 755 LAPARGASGDSGGVMDRVVSQMLAEIDG-------LN-DSSQDLFIIGASNRPD-----LIDPALLRPGRF 812 (934)
Q Consensus 755 l~~~r~~~~~~~~~~~~v~~~lL~~ldg-------~~-~~~~~v~vI~aTNrp~-----~lD~allrpGRf 812 (934)
..+ ++.+.||..|.. .. .-....+||||-|..+ .|++|++- ||
T Consensus 74 app-------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 APP-------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S-H-------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CCH-------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 654 345555554442 11 1235689999999876 66777776 76
No 335
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.40 E-value=6.3e-07 Score=103.50 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=72.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC--cEEEEecC-----ccccccccchHHHH--HHHHHHhhcC---CCEEEEEcc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGI--HVVEYSCH-----NLMASSERKTSAAL--AQAFNTAQSY---SPTILLLRD 464 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~--~~~~I~~~-----~L~~~~~g~~e~~L--~~~f~~A~~~---~P~IL~IDE 464 (934)
+.+|||.||||||||++|++++...+. +|..+.+. ++++.. +.... ...|...... ...++|+||
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l---~i~~~~~~g~f~r~~~G~L~~A~lLfLDE 115 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL---SIQALKDEGRYQRLTSGYLPEAEIVFLDE 115 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH---HHhhhhhcCchhhhcCCccccccEEeecc
Confidence 456999999999999999999998753 33433332 222211 00000 1112211100 123899999
Q ss_pred hhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCC---CChhhh
Q 002337 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG---LPPTIR 541 (934)
Q Consensus 465 ID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~---Ld~aLr 541 (934)
|..+.+ .....|-+.++... +...........++ +++|||.... ..+++.
T Consensus 116 I~rasp----------------~~QsaLLeam~Er~----------~t~g~~~~~lp~rf-iv~ATN~LPE~g~~leAL~ 168 (498)
T PRK13531 116 IWKAGP----------------AILNTLLTAINERR----------FRNGAHEEKIPMRL-LVTASNELPEADSSLEALY 168 (498)
T ss_pred cccCCH----------------HHHHHHHHHHHhCe----------EecCCeEEeCCCcE-EEEECCCCcccCCchHHhH
Confidence 986554 23333333332110 00000001112233 4444453211 224888
Q ss_pred cccceEEEcCCCCH-HHHHHHHHHh
Q 002337 542 RCFSHEISMGPLTE-QQRVEMLSQL 565 (934)
Q Consensus 542 rrF~~eI~i~~Pde-~~R~~IL~~l 565 (934)
.||...+.+|+|+. ++-.+|+...
T Consensus 169 DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 169 DRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred hhEEEEEECCCCCchHHHHHHHHcc
Confidence 89988999999974 5557777653
No 336
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1.1e-05 Score=97.61 Aligned_cols=173 Identities=15% Similarity=0.184 Sum_probs=107.2
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------------------------cEEE
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGI-------------------------HVVE 427 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~-------------------------~~~~ 427 (934)
..+.+.|...+.- -+.+..+|||||+|+|||++++++|+.+.. ++..
T Consensus 23 ~~~~~~L~~~i~~--------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ 94 (614)
T PRK14971 23 EALTTTLKNAIAT--------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHE 94 (614)
T ss_pred HHHHHHHHHHHHc--------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEE
Confidence 4455666555531 134456899999999999999999999852 2222
Q ss_pred EecCccccccccchHHHHHHHHHHhhcC----CCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCcccc
Q 002337 428 YSCHNLMASSERKTSAALAQAFNTAQSY----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDE 503 (934)
Q Consensus 428 I~~~~L~~~~~g~~e~~L~~~f~~A~~~----~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~ 503 (934)
+++. .......++.+.+.+... ..-|++|||+|.+.. .-...|..+++.
T Consensus 95 ld~~------~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~----------------~a~naLLK~LEe----- 147 (614)
T PRK14971 95 LDAA------SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ----------------AAFNAFLKTLEE----- 147 (614)
T ss_pred eccc------ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH----------------HHHHHHHHHHhC-----
Confidence 2221 112244566666655422 235999999997753 112233333332
Q ss_pred ccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHH
Q 002337 504 DEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVK 583 (934)
Q Consensus 504 ~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~ 583 (934)
....+++|.+|+....|.+.+++|+. .+.+..++..+....++..++.... ..+ ...+.
T Consensus 148 ----------------pp~~tifIL~tt~~~kIl~tI~SRc~-iv~f~~ls~~ei~~~L~~ia~~egi---~i~-~~al~ 206 (614)
T PRK14971 148 ----------------PPSYAIFILATTEKHKILPTILSRCQ-IFDFNRIQVADIVNHLQYVASKEGI---TAE-PEALN 206 (614)
T ss_pred ----------------CCCCeEEEEEeCCchhchHHHHhhhh-eeecCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHH
Confidence 13456677777778889999999985 7999999999988888876654322 111 23456
Q ss_pred HHHhhcCCCChHHHHHHHH
Q 002337 584 DIIGQTSGFMPRDLHALVA 602 (934)
Q Consensus 584 ~la~~t~Gfv~~DL~~L~~ 602 (934)
.++..+.| ..+++..++.
T Consensus 207 ~La~~s~g-dlr~al~~Le 224 (614)
T PRK14971 207 VIAQKADG-GMRDALSIFD 224 (614)
T ss_pred HHHHHcCC-CHHHHHHHHH
Confidence 66666543 4444444443
No 337
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.39 E-value=4.6e-06 Score=98.02 Aligned_cols=205 Identities=21% Similarity=0.273 Sum_probs=128.6
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc----------CCcEEEecCcccccc----------ccchhhh------hhHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELINM----------YIGESEK------NVRDIFQ 737 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~~~----------~~Gese~------~v~~lf~ 737 (934)
+..+.+.|-||||||..+..+-+++ ...++.|++-.|.++ +.|+... .+..-|.
T Consensus 422 g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~ 501 (767)
T KOG1514|consen 422 GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFT 501 (767)
T ss_pred ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc
Confidence 3467889999999999999987754 457889998666543 3443321 2233333
Q ss_pred HH-HhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhC---CCCcc
Q 002337 738 KA-RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLR---PGRFD 813 (934)
Q Consensus 738 ~A-~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allr---pGRfd 813 (934)
.. -...+|||+|||+|.|..+. ..|+..+... ....+.+++|||..|..+... .++- ..|++
T Consensus 502 ~~k~~~~~~VvLiDElD~Lvtr~----------QdVlYn~fdW---pt~~~sKLvvi~IaNTmdlPE-r~l~nrvsSRlg 567 (767)
T KOG1514|consen 502 VPKPKRSTTVVLIDELDILVTRS----------QDVLYNIFDW---PTLKNSKLVVIAIANTMDLPE-RLLMNRVSSRLG 567 (767)
T ss_pred cCCCCCCCEEEEeccHHHHhccc----------HHHHHHHhcC---CcCCCCceEEEEecccccCHH-HHhccchhhhcc
Confidence 11 23567999999999998542 3466666544 222356789999888876432 3321 11443
Q ss_pred -eeeeecCCCCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHHHHHHhcccCCCCCCccc
Q 002337 814 -KLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHAAKRKVLSSDSNSDSSRI 890 (934)
Q Consensus 814 -~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~ 890 (934)
..|.|. |++.++.++|+...++......+ +..+|+.+--..-|| .--..+|++|...|-.+.... .
T Consensus 568 ~tRi~F~-pYth~qLq~Ii~~RL~~~~~f~~-~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~-k-------- 636 (767)
T KOG1514|consen 568 LTRICFQ-PYTHEQLQEIISARLKGLDAFEN-KAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKG-K-------- 636 (767)
T ss_pred ceeeecC-CCCHHHHHHHHHHhhcchhhcch-hHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc-c--------
Confidence 245566 69999999999999887743322 233444331233343 223367899888887765411 1
Q ss_pred cccCcccccHHHHHHHHHhhCCCc
Q 002337 891 DQADSVVVEYDDFVKVLRELSPSL 914 (934)
Q Consensus 891 ~~~~~~~it~~df~~al~~~~psv 914 (934)
....-.|+.-|+.+|+.++.-+.
T Consensus 637 -~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 637 -LAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred -ccccceeehHHHHHHHHHHhhhh
Confidence 12233688899999998886554
No 338
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=4.8e-06 Score=100.80 Aligned_cols=157 Identities=20% Similarity=0.266 Sum_probs=100.0
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC-------------------------cEEEecCccccccccchhhhhhHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL-------------------------NFLSVKGPELINMYIGESEKNVRDIFQK 738 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~-------------------------~~i~v~~~~l~~~~~Gese~~v~~lf~~ 738 (934)
+..+|||||+|+|||++|+++|..+.. +++.+++.+- .+-..++++.+.
T Consensus 39 ~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~ 112 (614)
T PRK14971 39 AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQ 112 (614)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHH
Confidence 456899999999999999999987642 3333332210 112446677666
Q ss_pred HHhC----CCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcce
Q 002337 739 ARSA----RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDK 814 (934)
Q Consensus 739 A~~~----~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~ 814 (934)
++.. ...|++|||+|.+. ....+.||..|+... ...++|.+|+.+..|-+.+++ |..
T Consensus 113 ~~~~P~~~~~KVvIIdea~~Ls-------------~~a~naLLK~LEepp---~~tifIL~tt~~~kIl~tI~S--Rc~- 173 (614)
T PRK14971 113 VRIPPQIGKYKIYIIDEVHMLS-------------QAAFNAFLKTLEEPP---SYAIFILATTEKHKILPTILS--RCQ- 173 (614)
T ss_pred HhhCcccCCcEEEEEECcccCC-------------HHHHHHHHHHHhCCC---CCeEEEEEeCCchhchHHHHh--hhh-
Confidence 6432 23599999999884 234567777777653 344555566666788889988 764
Q ss_pred eeeecCCCCHHHHHHHHHHHHhcCCCCcCC-CHHHHHhhCCCCCCHHHHHHHHHH
Q 002337 815 LLYVGVNSDVSYRERVLKALTRKFKLLEDV-SLYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 815 ~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~-~l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
.+.|.. ++.++-..+++...++.++.-+- .+..++..+ |-+-+++.+++..
T Consensus 174 iv~f~~-ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s--~gdlr~al~~Lek 225 (614)
T PRK14971 174 IFDFNR-IQVADIVNHLQYVASKEGITAEPEALNVIAQKA--DGGMRDALSIFDQ 225 (614)
T ss_pred eeecCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 577774 66666667777666665543322 356777763 4455555555544
No 339
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.37 E-value=6.5e-06 Score=89.69 Aligned_cols=179 Identities=16% Similarity=0.235 Sum_probs=106.0
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---------CCcEEEecCccccc--------------cccc-hh-hhhhHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---------SLNFLSVKGPELIN--------------MYIG-ES-EKNVRDIFQK 738 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---------~~~~i~v~~~~l~~--------------~~~G-es-e~~v~~lf~~ 738 (934)
..++|++|++|.|||++++.++... ..+++.+..+.--+ .|-. .+ .+.-..+...
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998654 23666666532111 1111 11 1122333455
Q ss_pred HHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC--CCChhhhCCCCcceee
Q 002337 739 ARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD--LIDPALLRPGRFDKLL 816 (934)
Q Consensus 739 A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~--~lD~allrpGRfd~~i 816 (934)
.+...+-+|+|||++.+...+. .. .+.+++.| +.+.. .-.-.++.+||-.--. .-|+-+.+ ||+...
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~---~~---qr~~Ln~L-K~L~N--eL~ipiV~vGt~~A~~al~~D~QLa~--RF~~~~ 209 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSY---RK---QREFLNAL-KFLGN--ELQIPIVGVGTREAYRALRTDPQLAS--RFEPFE 209 (302)
T ss_pred HHHcCCcEEEeechHHHhcccH---HH---HHHHHHHH-HHHhh--ccCCCeEEeccHHHHHHhccCHHHHh--ccCCcc
Confidence 5667888999999999863321 11 12233333 22211 1123466666543222 34788888 998544
Q ss_pred eecCCCCHHHHHHHHHHHHhcCCCCcC--CCH----HHHHhhCCCCCCHHHHHHHHHHHHHHHHHH
Q 002337 817 YVGVNSDVSYRERVLKALTRKFKLLED--VSL----YSIAKKCPPNFTGADMYALCADAWFHAAKR 876 (934)
Q Consensus 817 ~v~~Pp~~~~r~~Il~~~~~~~~~~~~--~~l----~~la~~~t~g~sgaDl~~l~~~A~~~A~~r 876 (934)
.=+..++ ++...++..+.+.+++... ..- ..+-.. ++|..| ++..+++.|+..|++.
T Consensus 210 Lp~W~~d-~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~-s~G~iG-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 210 LPRWELD-EEFRRLLASFERALPLRKPSNLASPELARRIHER-SEGLIG-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred CCCCCCC-cHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-cCCchH-HHHHHHHHHHHHHHhc
Confidence 4333334 4456677777777765432 222 234445 588885 8999999999999864
No 340
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=5e-06 Score=94.11 Aligned_cols=162 Identities=14% Similarity=0.144 Sum_probs=94.6
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCc-------EEEe----cC-----------cccc---ccccch-----h---hh
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLN-------FLSV----KG-----------PELI---NMYIGE-----S---EK 730 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~-------~i~v----~~-----------~~l~---~~~~Ge-----s---e~ 730 (934)
+..+||+||+|+|||++|+.+|+.+... .... .| +++. ..+... . -.
T Consensus 45 ~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd 124 (351)
T PRK09112 45 HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVD 124 (351)
T ss_pred CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHH
Confidence 4579999999999999999999886431 1000 00 1111 000000 1 12
Q ss_pred hhHHHHHHHH----hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhh
Q 002337 731 NVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPAL 806 (934)
Q Consensus 731 ~v~~lf~~A~----~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~al 806 (934)
.+|++-+... .....|++|||+|.+. ....+.||..|+... .++++|..|+.|+.+.|.+
T Consensus 125 ~iR~l~~~l~~~~~~g~~rVviIDeAd~l~-------------~~aanaLLk~LEEpp---~~~~fiLit~~~~~llptI 188 (351)
T PRK09112 125 EIRRVGHFLSQTSGDGNWRIVIIDPADDMN-------------RNAANAILKTLEEPP---ARALFILISHSSGRLLPTI 188 (351)
T ss_pred HHHHHHHHhhhccccCCceEEEEEchhhcC-------------HHHHHHHHHHHhcCC---CCceEEEEECChhhccHHH
Confidence 3444433322 3445699999999984 224566777776542 3445555567788888999
Q ss_pred hCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHH
Q 002337 807 LRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 807 lrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
++ |+ ..+.++ |++.++-.++++.......+. +..+..+++.+ +-+.....++...
T Consensus 189 rS--Rc-~~i~l~-pl~~~~~~~~L~~~~~~~~~~-~~~~~~i~~~s--~G~pr~Al~ll~~ 243 (351)
T PRK09112 189 RS--RC-QPISLK-PLDDDELKKALSHLGSSQGSD-GEITEALLQRS--KGSVRKALLLLNY 243 (351)
T ss_pred Hh--hc-cEEEec-CCCHHHHHHHHHHhhcccCCC-HHHHHHHHHHc--CCCHHHHHHHHhc
Confidence 88 88 588888 578888888887643222211 11244566552 3344444444443
No 341
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.34 E-value=1.7e-06 Score=97.10 Aligned_cols=77 Identities=21% Similarity=0.419 Sum_probs=56.0
Q ss_pred CcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhcc---------CCc-CCCCCEEEEEEcCCCC-CCChhhhCCCCc
Q 002337 744 PCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEID---------GLN-DSSQDLFIIGASNRPD-LIDPALLRPGRF 812 (934)
Q Consensus 744 p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ld---------g~~-~~~~~v~vI~aTNrp~-~lD~allrpGRf 812 (934)
..+||+||++.+.+ .+.+.|+..|+ |.. ....++++|+|.|..+ .+.++++. ||
T Consensus 145 ~GiL~lDEInrL~~-------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf 209 (350)
T CHL00081 145 RGILYVDEVNLLDD-------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RF 209 (350)
T ss_pred CCEEEecChHhCCH-------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--Hh
Confidence 35999999999853 34444555443 221 1234688888888665 58999999 99
Q ss_pred ceeeeecCCCCHHHHHHHHHHHH
Q 002337 813 DKLLYVGVNSDVSYRERVLKALT 835 (934)
Q Consensus 813 d~~i~v~~Pp~~~~r~~Il~~~~ 835 (934)
...+.++.|.+.+.+.+|++...
T Consensus 210 ~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 210 GMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred CceeecCCCCChHHHHHHHHhhh
Confidence 99999998666789999998753
No 342
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=2.7e-06 Score=95.46 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=87.1
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHcCCcE----------------EEecCcccccccc---ch--hhhhhHHHHHHHH
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATECSLNF----------------LSVKGPELINMYI---GE--SEKNVRDIFQKAR 740 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~~~~~----------------i~v~~~~l~~~~~---Ge--se~~v~~lf~~A~ 740 (934)
+.+..+||+||+|+||+++|+++|+.+...- ..-+-+|+..-.. +. .-..+|++.+.+.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~ 99 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVV 99 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHh
Confidence 3456799999999999999999998763210 0001122211100 00 1245666666554
Q ss_pred h----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceee
Q 002337 741 S----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLL 816 (934)
Q Consensus 741 ~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i 816 (934)
. ....|++|||+|.+. ....|.||+.|+.- ..++++|.+|+.++.|.|.+++ |... +
T Consensus 100 ~~~~~~~~kv~iI~~a~~m~-------------~~aaNaLLK~LEEP---p~~~~fiL~t~~~~~ll~TI~S--Rc~~-~ 160 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMN-------------RNAANALLKSLEEP---SGDTVLLLISHQPSRLLPTIKS--RCQQ-Q 160 (328)
T ss_pred hccccCCCeEEEECChhhCC-------------HHHHHHHHHHHhCC---CCCeEEEEEECChhhCcHHHHh--hcee-e
Confidence 3 345699999999985 24567788877764 3467777899999999999999 8865 7
Q ss_pred eecCCCCHHHHHHHHHH
Q 002337 817 YVGVNSDVSYRERVLKA 833 (934)
Q Consensus 817 ~v~~Pp~~~~r~~Il~~ 833 (934)
.|+. ++.++-.+.++.
T Consensus 161 ~~~~-~~~~~~~~~L~~ 176 (328)
T PRK05707 161 ACPL-PSNEESLQWLQQ 176 (328)
T ss_pred eCCC-cCHHHHHHHHHH
Confidence 7774 666666555554
No 343
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.33 E-value=1.5e-05 Score=89.60 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=38.8
Q ss_pred cccEEEEEecCCCC-CCChhhhcccceEEEcCCCC-HHHHHHHHHHhc
Q 002337 521 RQQVLLVAAADSSE-GLPPTIRRCFSHEISMGPLT-EQQRVEMLSQLL 566 (934)
Q Consensus 521 ~~~ViVIatTn~~~-~Ld~aLrrrF~~eI~i~~Pd-e~~R~~IL~~ll 566 (934)
..++++|+|.|..+ .+++++..||.-.+.++.|+ .+.|.+|++...
T Consensus 185 p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 185 PARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred CCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhh
Confidence 45788999888665 49999999999999999998 599999998753
No 344
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=1.5e-05 Score=90.35 Aligned_cols=161 Identities=21% Similarity=0.260 Sum_probs=94.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCc-------EEE-Eec---C-----------ccc---cc--cc------cchH
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIH-------VVE-YSC---H-----------NLM---AS--SE------RKTS 442 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~-------~~~-I~~---~-----------~L~---~~--~~------g~~e 442 (934)
.+..+||+||+|+||||+++.+|+.+..+ ... ..| . ++. .. .. .-+.
T Consensus 44 l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~v 123 (351)
T PRK09112 44 LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITV 123 (351)
T ss_pred CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCH
Confidence 34468999999999999999999998541 110 111 1 111 00 00 0112
Q ss_pred HHHHHHHHHhh----cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhh
Q 002337 443 AALAQAFNTAQ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK 518 (934)
Q Consensus 443 ~~L~~~f~~A~----~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~ 518 (934)
..++++.+... .....|++|||+|.+... ....+|+.+ +.
T Consensus 124 d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~---------------aanaLLk~L-EE-------------------- 167 (351)
T PRK09112 124 DEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN---------------AANAILKTL-EE-------------------- 167 (351)
T ss_pred HHHHHHHHHhhhccccCCceEEEEEchhhcCHH---------------HHHHHHHHH-hc--------------------
Confidence 33333332222 234579999999987541 112223222 21
Q ss_pred hhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHH
Q 002337 519 ICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLH 598 (934)
Q Consensus 519 ~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~ 598 (934)
....+++|..|+.+..+.+.+++|+ +.+.+++|+.++-.++++...... +.+ +..+..++..+.|- ++...
T Consensus 168 -pp~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~-----~~~-~~~~~~i~~~s~G~-pr~Al 238 (351)
T PRK09112 168 -PPARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQ-----GSD-GEITEALLQRSKGS-VRKAL 238 (351)
T ss_pred -CCCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhccc-----CCC-HHHHHHHHHHcCCC-HHHHH
Confidence 1344566666778889999999998 599999999999999998743211 111 33355566655553 33333
Q ss_pred HHH
Q 002337 599 ALV 601 (934)
Q Consensus 599 ~L~ 601 (934)
.+.
T Consensus 239 ~ll 241 (351)
T PRK09112 239 LLL 241 (351)
T ss_pred HHH
Confidence 444
No 345
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.32 E-value=2e-07 Score=108.86 Aligned_cols=222 Identities=19% Similarity=0.259 Sum_probs=128.0
Q ss_pred CCcceecCCCCCcchHHHHHHHHH--cCCcEEEecCccccc-----cccchhh--------hhhHHHHHHHHhCCCcEEE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATE--CSLNFLSVKGPELIN-----MYIGESE--------KNVRDIFQKARSARPCVIF 748 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~--~~~~~i~v~~~~l~~-----~~~Gese--------~~v~~lf~~A~~~~p~vlf 748 (934)
...+++.|.|||||..+++++-.. ...+|+.|+|..+-. .++|-.+ +.-+..++.|.+ ..+|
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccH
Confidence 568999999999999999999554 456899999854422 2233222 223334444433 4999
Q ss_pred eccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeee-------cCC
Q 002337 749 FDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYV-------GVN 821 (934)
Q Consensus 749 iDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v-------~~P 821 (934)
+|||..+.-. .+....+-+...-+.-++|-. ..-+|-||+||+++ -..|.+-|||-+-+|+ .+|
T Consensus 413 ldeIgd~p~~-----~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~d---l~~lv~~g~fredLyyrL~~~~i~lP 483 (606)
T COG3284 413 LDEIGDMPLA-----LQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRD---LAQLVEQGRFREDLYYRLNAFVITLP 483 (606)
T ss_pred HHHhhhchHH-----HHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcC---HHHHHHcCCchHHHHHHhcCeeeccC
Confidence 9999887521 111111111122234455655 55689999999986 3688899999877764 457
Q ss_pred CCHHHHHHHH---HHHHhcCCCCcCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcc
Q 002337 822 SDVSYRERVL---KALTRKFKLLEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSV 896 (934)
Q Consensus 822 p~~~~r~~Il---~~~~~~~~~~~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~ 896 (934)
|-.+++..|. +.+.+.......++-+.++......|-| .+|.+++..++..+--..+...+..+.--........
T Consensus 484 ~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~~~dlp~~l~~~~~~~~~ 563 (606)
T COG3284 484 PLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIRVSDLPPELLEEQATPRE 563 (606)
T ss_pred chhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCeeEcccCCHHHHhhhccccc
Confidence 7666555443 3333333333344444444433345655 7899999887765532222211111000000001122
Q ss_pred cccHHHHHHHHHhhCCCcCHH
Q 002337 897 VVEYDDFVKVLRELSPSLSMA 917 (934)
Q Consensus 897 ~it~~df~~al~~~~psvs~~ 917 (934)
.+..+.+..|++..+-.+|+.
T Consensus 564 ~~~~~~l~~al~~~~~~is~a 584 (606)
T COG3284 564 DIEKAALLAALQATNGNISEA 584 (606)
T ss_pred chHHHHHHHHHHHcCCCHHHH
Confidence 466778888888887776654
No 346
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.31 E-value=1.4e-06 Score=102.50 Aligned_cols=171 Identities=20% Similarity=0.322 Sum_probs=101.6
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCcccccc-----ccchhhhh-------hHHHHHHHHhCCCcEEE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM-----YIGESEKN-------VRDIFQKARSARPCVIF 748 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~-----~~Gese~~-------v~~lf~~A~~~~p~vlf 748 (934)
...++++|++||||+++|+++.... +.+|+.++|..+... .+|..... -...|..| ...+||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 242 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLL 242 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEE
Confidence 4689999999999999999997654 578999999776322 12211100 01123333 345999
Q ss_pred eccccccccCCCCCCCCchhHHHHHHhhhhhccC--------CcCCCCCEEEEEEcCCCCCCChhhhCCCCccee-----
Q 002337 749 FDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG--------LNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL----- 815 (934)
Q Consensus 749 iDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg--------~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~----- 815 (934)
|||+|.+.+. +...|+..++. ......++.||+|||+.- ..+.+.|+|...
T Consensus 243 ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l---~~~~~~g~~~~~l~~~l 306 (457)
T PRK11361 243 LDEIGEMPLV-------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDL---QAMVKEGTFREDLFYRL 306 (457)
T ss_pred EechhhCCHH-------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHh
Confidence 9999999632 33334333322 111124689999998642 355566777663
Q ss_pred --eeecCCCCHHHHHHHH---HHHHhcCC----CC-cCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002337 816 --LYVGVNSDVSYRERVL---KALTRKFK----LL-EDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 873 (934)
Q Consensus 816 --i~v~~Pp~~~~r~~Il---~~~~~~~~----~~-~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A 873 (934)
+.+.+||-.+++++|. ..++.++. .. ..++-+.+.......|.| .+|++++.+|...+
T Consensus 307 ~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 307 NVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred ccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 4467788888777764 33333321 11 123333332222345655 88999998877654
No 347
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.30 E-value=1.2e-06 Score=102.82 Aligned_cols=172 Identities=20% Similarity=0.282 Sum_probs=99.6
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccc-----cchhh-------hhhHHHHHHHHhCCCcEEE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMY-----IGESE-------KNVRDIFQKARSARPCVIF 748 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~-----~Gese-------~~v~~lf~~A~~~~p~vlf 748 (934)
...++++|++||||+++|+++.... +.+|+.++|..+...+ +|... ......|.. +...+||
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ 238 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLF 238 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeE---CCCCEEE
Confidence 4689999999999999999997654 4689999998763221 12110 001112332 3346999
Q ss_pred eccccccccCCCCCCCCchhHHHHHHhhhhhcc--------CCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee-----
Q 002337 749 FDELDSLAPARGASGDSGGVMDRVVSQMLAEID--------GLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL----- 815 (934)
Q Consensus 749 iDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ld--------g~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~----- 815 (934)
|||++.+.. .+...|+..++ +......++.+|+||++.- ..+...|+|...
T Consensus 239 l~~i~~l~~-------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l---~~~~~~~~~~~~L~~~l 302 (445)
T TIGR02915 239 LDEIGDLPL-------------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDL---KRMIAEGTFREDLFYRI 302 (445)
T ss_pred EechhhCCH-------------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCH---HHHHHcCCccHHHHHHh
Confidence 999999863 23333333332 2112223689999998752 123333455432
Q ss_pred --eeecCCCCHHHHHHHH---HHHHhcC----CCC-cCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHHH
Q 002337 816 --LYVGVNSDVSYRERVL---KALTRKF----KLL-EDVSLYSIAKKCPPNFTG--ADMYALCADAWFHAA 874 (934)
Q Consensus 816 --i~v~~Pp~~~~r~~Il---~~~~~~~----~~~-~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A~ 874 (934)
+.+.+||-.+++++|. ..+++++ ... ..++-+.+.......|.| .+|++++.+|+..+-
T Consensus 303 ~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 303 AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAE 373 (445)
T ss_pred ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 4456678888777653 3333332 211 223333333322345655 899999998886553
No 348
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.30 E-value=7.1e-06 Score=96.48 Aligned_cols=122 Identities=25% Similarity=0.343 Sum_probs=74.4
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHcCC----------cEEEecCc-----cc-----ccc--------ccchhhhhhH
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATECSL----------NFLSVKGP-----EL-----INM--------YIGESEKNVR 733 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~~~----------~~i~v~~~-----~l-----~~~--------~~Gese~~v~ 733 (934)
..+.+++|+||||+|||++++.++..... .+.++.+. .+ .+. .+|.....-.
T Consensus 208 ~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~p 287 (506)
T PRK09862 208 AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGP 287 (506)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehh
Confidence 34678999999999999999999876521 11111111 01 000 1222111112
Q ss_pred HHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCc----------CCCCCEEEEEEcCCCC---
Q 002337 734 DIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN----------DSSQDLFIIGASNRPD--- 800 (934)
Q Consensus 734 ~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~----------~~~~~v~vI~aTNrp~--- 800 (934)
..+..|.. .+||+||++.+- ..++..|+..|+.-. ....++.+|+|+|...
T Consensus 288 G~l~~A~g---GvLfLDEi~e~~-------------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~ 351 (506)
T PRK09862 288 GEISLAHN---GVLFLDELPEFE-------------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGH 351 (506)
T ss_pred hHhhhccC---CEEecCCchhCC-------------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCcccee
Confidence 34555544 499999997763 245555555443211 1134689999999753
Q ss_pred ------------------CCChhhhCCCCcceeeeecCC
Q 002337 801 ------------------LIDPALLRPGRFDKLLYVGVN 821 (934)
Q Consensus 801 ------------------~lD~allrpGRfd~~i~v~~P 821 (934)
.|..+++. |||-.+.++.|
T Consensus 352 ~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~ 388 (506)
T PRK09862 352 YQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLP 388 (506)
T ss_pred cCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCC
Confidence 36778888 99999999963
No 349
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.29 E-value=3.3e-06 Score=88.48 Aligned_cols=172 Identities=18% Similarity=0.220 Sum_probs=98.1
Q ss_pred cCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecC--ccccccccchHHHHHHHHHHhhcCCCEEEEEc
Q 002337 386 TLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCH--NLMASSERKTSAALAQAFNTAQSYSPTILLLR 463 (934)
Q Consensus 386 ~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~--~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~ID 463 (934)
.++.-.+.+..+..+.|+|++|||||||+|++|+......+.|... .+..+... + +..+.--.+|-|
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~------~-----~~~~~VQmVFQD 90 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRA------K-----AFYRPVQMVFQD 90 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccc------h-----hhccceeEEecC
Confidence 3344445566677799999999999999999999987776665443 22211100 0 112233466666
Q ss_pred chhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcc
Q 002337 464 DFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRC 543 (934)
Q Consensus 464 EID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrr 543 (934)
=-.+|.|.+ .+...|.+-+....... .... +...-..-+|++..++|
T Consensus 91 p~~SLnP~~--------------tv~~~l~Epl~~~~~~~--------~~~~-----------i~~~L~~VgL~~~~l~R 137 (252)
T COG1124 91 PYSSLNPRR--------------TVGRILSEPLRPHGLSK--------SQQR-----------IAELLDQVGLPPSFLDR 137 (252)
T ss_pred CccccCcch--------------hHHHHHhhhhccCCccH--------HHHH-----------HHHHHHHcCCCHHHHhc
Confidence 655555522 12222222211100000 0000 00000223589999999
Q ss_pred cceEEEcCCCCHHHHHHHHHHhccccccccCCCCc-------h----HHHHHHHhhcC---CCChHHHHHHHHHH
Q 002337 544 FSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-------E----EFVKDIIGQTS---GFMPRDLHALVADA 604 (934)
Q Consensus 544 F~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~-------~----~~L~~la~~t~---Gfv~~DL~~L~~~A 604 (934)
+.++++.| +.||..|++.+.-++..+..|... . ..+.++.+... =|+.||+..+..-+
T Consensus 138 ~P~eLSGG---Q~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 138 RPHELSGG---QRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred CchhcChh---HHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHh
Confidence 99999999 999999999998888777555432 1 11223333222 17889987665433
No 350
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.29 E-value=8.4e-06 Score=98.21 Aligned_cols=186 Identities=16% Similarity=0.214 Sum_probs=99.9
Q ss_pred HHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEE-E---ecCccccc------------c
Q 002337 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE-Y---SCHNLMAS------------S 437 (934)
Q Consensus 374 ~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~-I---~~~~L~~~------------~ 437 (934)
+.++.+..++.... +...++.-++|+|||||||||+++++|++++..+.+ + +|...... .
T Consensus 91 ~ki~~l~~~l~~~~----~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~ 166 (637)
T TIGR00602 91 KKIEEVETWLKAQV----LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSN 166 (637)
T ss_pred HHHHHHHHHHHhcc----cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhcccc
Confidence 44455555554332 223445569999999999999999999999875543 1 11110000 0
Q ss_pred ccchHHHHHHHHHHhhc----------CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHH-HhcCCCccccccc
Q 002337 438 ERKTSAALAQAFNTAQS----------YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIR-EFTEPSAEDEDEE 506 (934)
Q Consensus 438 ~g~~e~~L~~~f~~A~~----------~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~-~ll~~~~~~~~~~ 506 (934)
.......++.++..+.. ....||||||++.+... ....+..+|. .+.+
T Consensus 167 ~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r------------~~~~lq~lLr~~~~e--------- 225 (637)
T TIGR00602 167 FQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR------------DTRALHEILRWKYVS--------- 225 (637)
T ss_pred ccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh------------hHHHHHHHHHHHhhc---------
Confidence 01223344444554431 24679999999976531 1112333333 1211
Q ss_pred cCCCCchhhhhhhhcccEEEEEecC-CCC--------C------CChhhhc-ccceEEEcCCCCHHHHHHHHHHhccccc
Q 002337 507 SHGYFPVKEIEKICRQQVLLVAAAD-SSE--------G------LPPTIRR-CFSHEISMGPLTEQQRVEMLSQLLQPVS 570 (934)
Q Consensus 507 ~~g~~~~~~~~~~~~~~ViVIatTn-~~~--------~------Ld~aLrr-rF~~eI~i~~Pde~~R~~IL~~ll~~~~ 570 (934)
...+.+|++++ .+. . |.+++++ .-...|.|.+.+..+....|+..++...
T Consensus 226 --------------~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~ 291 (637)
T TIGR00602 226 --------------IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEA 291 (637)
T ss_pred --------------CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhh
Confidence 22233444333 121 1 3367764 2334899999999997777777665422
Q ss_pred ccc-CC--CCchHHHHHHHhhcCCCChHHHHHHHH
Q 002337 571 ELT-SD--TGSEEFVKDIIGQTSGFMPRDLHALVA 602 (934)
Q Consensus 571 ~l~-~d--~~~~~~L~~la~~t~Gfv~~DL~~L~~ 602 (934)
... .+ ......++.++... .+|++..+.
T Consensus 292 ~~~~~~~~~p~~~~l~~I~~~s----~GDiRsAIn 322 (637)
T TIGR00602 292 KKNGEKIKVPKKTSVELLCQGC----SGDIRSAIN 322 (637)
T ss_pred hccccccccCCHHHHHHHHHhC----CChHHHHHH
Confidence 111 11 12245667777644 456665554
No 351
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.28 E-value=5.9e-06 Score=98.44 Aligned_cols=143 Identities=21% Similarity=0.292 Sum_probs=85.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEE----ecCccccccccc---hHHHHHH-HHHHhhcCCCEEEEEcchhhcc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEY----SCHNLMASSERK---TSAALAQ-AFNTAQSYSPTILLLRDFDVFR 469 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I----~~~~L~~~~~g~---~e~~L~~-~f~~A~~~~P~IL~IDEID~L~ 469 (934)
.+|||+|+||+|||+++|++++......+.. ++..+....... .+..++. .+. ....++++|||++.+.
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l~ 313 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALV---LADNGVCCIDEFDKMD 313 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEE---ecCCCEEEEechhhCC
Confidence 4899999999999999999999875432221 222222211000 0000100 111 1235799999999875
Q ss_pred ccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-------------CC
Q 002337 470 NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-------------GL 536 (934)
Q Consensus 470 ~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~-------------~L 536 (934)
+ .....|.+.+++... . -...|.. .....+..||||+|..+ .|
T Consensus 314 ~----------------~~q~~L~e~me~~~i-~-i~k~G~~------~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l 369 (509)
T smart00350 314 D----------------SDRTAIHEAMEQQTI-S-IAKAGIT------TTLNARCSVLAAANPIGGRYDPKLTPEENIDL 369 (509)
T ss_pred H----------------HHHHHHHHHHhcCEE-E-EEeCCEE------EEecCCcEEEEEeCCCCcccCCCcChhhccCC
Confidence 4 233344444433110 0 0001100 11245688999999753 48
Q ss_pred ChhhhcccceE-EEcCCCCHHHHHHHHHHhcc
Q 002337 537 PPTIRRCFSHE-ISMGPLTEQQRVEMLSQLLQ 567 (934)
Q Consensus 537 d~aLrrrF~~e-I~i~~Pde~~R~~IL~~ll~ 567 (934)
++++.+||+-. +..+.|+.+...+|+++.+.
T Consensus 370 ~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 370 PAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred ChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99999999764 56678999999999988653
No 352
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=3.8e-05 Score=87.50 Aligned_cols=148 Identities=17% Similarity=0.197 Sum_probs=91.7
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcE-------E------EE--ecC------
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHV-------V------EY--SCH------ 431 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~-------~------~I--~~~------ 431 (934)
++..+.|...+.. -+.+..+||+||+|+||+++|.++|+.+-..- . .+ .|+
T Consensus 25 ~~~~~~L~~~~~~--------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~ 96 (365)
T PRK07471 25 AAAEAALLDAYRS--------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA 96 (365)
T ss_pred HHHHHHHHHHHHc--------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH
Confidence 4455566555432 13445689999999999999999999883210 0 00 011
Q ss_pred -----ccccc-----ccc------chHHHHHHHHHHhh----cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHH
Q 002337 432 -----NLMAS-----SER------KTSAALAQAFNTAQ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASV 491 (934)
Q Consensus 432 -----~L~~~-----~~g------~~e~~L~~~f~~A~----~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~ 491 (934)
++.-- ..+ -....++++.+.+. ...+.|++|||+|.+.. .....+
T Consensus 97 ~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~---------------~aanaL 161 (365)
T PRK07471 97 AGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA---------------NAANAL 161 (365)
T ss_pred ccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH---------------HHHHHH
Confidence 11100 001 12234455444333 23578999999997754 112222
Q ss_pred HHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhc
Q 002337 492 IREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLL 566 (934)
Q Consensus 492 L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll 566 (934)
| ..++. ....+++|.+|+.++.+.+.+++|+. .+.+++|+.++-.+++....
T Consensus 162 L-K~LEe---------------------pp~~~~~IL~t~~~~~llpti~SRc~-~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 162 L-KVLEE---------------------PPARSLFLLVSHAPARLLPTIRSRCR-KLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred H-HHHhc---------------------CCCCeEEEEEECCchhchHHhhccce-EEECCCCCHHHHHHHHHHhc
Confidence 3 22221 14556777788899899999999985 99999999999998888754
No 353
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.28 E-value=7.6e-07 Score=109.11 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=42.4
Q ss_pred cceEEEcCCCCHHHHHHHHHHhcccccccc-------CCCCchHHHHHHHhhcCC---CChHHHHHHHH
Q 002337 544 FSHEISMGPLTEQQRVEMLSQLLQPVSELT-------SDTGSEEFVKDIIGQTSG---FMPRDLHALVA 602 (934)
Q Consensus 544 F~~eI~i~~Pde~~R~~IL~~ll~~~~~l~-------~d~~~~~~L~~la~~t~G---fv~~DL~~L~~ 602 (934)
....++.| +.+|+.|.+.++.+++.+. +|.....|+.++.....+ ++.||+..+..
T Consensus 153 ~~~~LSgG---ekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~ 218 (635)
T PRK11147 153 ALSSLSGG---WLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRN 218 (635)
T ss_pred chhhcCHH---HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 33578888 9999999999998887664 344446778888777666 77899887753
No 354
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.27 E-value=1.5e-05 Score=96.25 Aligned_cols=143 Identities=16% Similarity=0.202 Sum_probs=86.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC--cEEEEecCccccccccchHHHHHHHHHHh---------hcCCCEEEEEcchh
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGI--HVVEYSCHNLMASSERKTSAALAQAFNTA---------QSYSPTILLLRDFD 466 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~--~~~~I~~~~L~~~~~g~~e~~L~~~f~~A---------~~~~P~IL~IDEID 466 (934)
.+|||.|+||||||++++++++.++. +|+.+.+........|.. .+...+... .....+++||||++
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 36999999999999999999998764 478777532111111111 111111100 01234799999999
Q ss_pred hccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC---CCChhhhcc
Q 002337 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE---GLPPTIRRC 543 (934)
Q Consensus 467 ~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~---~Ld~aLrrr 543 (934)
.+.+ .+...|.+.++... ...+ ..|. ......++.||||+|..+ .+++++..|
T Consensus 95 rl~~----------------~~q~~Ll~al~~g~-v~i~-r~G~------~~~~p~~f~lIAt~np~e~~g~L~~~LldR 150 (589)
T TIGR02031 95 LLDD----------------GLSNRLLQALDEGV-VIVE-REGI------SVVHPAKFALIATYDPAEGGGGLPDHLLDR 150 (589)
T ss_pred hCCH----------------HHHHHHHHHHHcCC-eEEE-ECCC------ceeecCceEEEEecCCccccCCCCHHHHHh
Confidence 8765 33444444443210 0000 0010 011135688999888765 589999999
Q ss_pred cceEEEcCC-CCHHHHHHHHHHhc
Q 002337 544 FSHEISMGP-LTEQQRVEMLSQLL 566 (934)
Q Consensus 544 F~~eI~i~~-Pde~~R~~IL~~ll 566 (934)
|...+.+.. |+.++|.+|++..+
T Consensus 151 f~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 151 LALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred ccCeeecCCCCCHHHHHHHHHHHH
Confidence 988776654 67788999998865
No 355
>PRK08116 hypothetical protein; Validated
Probab=98.26 E-value=1.2e-06 Score=95.66 Aligned_cols=69 Identities=29% Similarity=0.506 Sum_probs=49.3
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccc----hhhhhhHHHHHHHHhCCCcEEEeccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIG----ESEKNVRDIFQKARSARPCVIFFDELDS 754 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~G----ese~~v~~lf~~A~~~~p~vlfiDEid~ 754 (934)
+.+++|+|++|||||+||.++|+++ +.+++.++.++++..+.. .+.....++++... ...+|+|||+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~ 189 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGA 189 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccC
Confidence 4579999999999999999999875 678888888887665422 11122234444433 335999999854
No 356
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=9.5e-06 Score=91.21 Aligned_cols=133 Identities=14% Similarity=0.201 Sum_probs=88.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcEE---EEecC--------------cccc--cc------------------
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVV---EYSCH--------------NLMA--SS------------------ 437 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~~~~---~I~~~--------------~L~~--~~------------------ 437 (934)
+.+.++||+||+|+||+++|+++|+.+...-- .-.|. ++.- ..
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 45667999999999999999999998844210 00111 1110 00
Q ss_pred --c---------cchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccc
Q 002337 438 --E---------RKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAED 502 (934)
Q Consensus 438 --~---------g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~ 502 (934)
. .-....++++.+.+.. ..--|++||+.|.+.. .....+|+.+-+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE----- 158 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---------------AAANALLKTLEE----- 158 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH---------------HHHHHHHHHhcC-----
Confidence 0 0122345555444331 2235999999998764 122334443322
Q ss_pred cccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHh
Q 002337 503 EDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQL 565 (934)
Q Consensus 503 ~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~l 565 (934)
....+++|.+|++++.|.|.+++|+ +.+.+++|+.++..+.|...
T Consensus 159 -----------------Pp~~t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 159 -----------------PPPGTVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred -----------------CCcCcEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 2677899999999999999999999 49999999999988888753
No 357
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=6.5e-06 Score=89.18 Aligned_cols=92 Identities=14% Similarity=0.280 Sum_probs=60.2
Q ss_pred CEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEec----CC
Q 002337 457 PTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA----DS 532 (934)
Q Consensus 457 P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatT----n~ 532 (934)
-+|+||||||.++......+..-.+.+....++ -+++ |.....-.+......+++||+. ..
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlL----PlvE-----------GstV~TKyG~VkTdHILFIasGAFh~sK 315 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLL----PLVE-----------GSTVSTKYGPVKTDHILFIASGAFHVAK 315 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhccccc----cccc-----------CceeeccccccccceEEEEecCceecCC
Confidence 479999999999974431111111122222222 2221 2122223345567889999987 46
Q ss_pred CCCCChhhhcccceEEEcCCCCHHHHHHHHH
Q 002337 533 SEGLPPTIRRCFSHEISMGPLTEQQRVEMLS 563 (934)
Q Consensus 533 ~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~ 563 (934)
|.+|=|.|..||+-.+++..++.+.-..||.
T Consensus 316 PSDLiPELQGRfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 316 PSDLIPELQGRFPIRVELDALTKEDFERILT 346 (444)
T ss_pred hhhcChhhcCCCceEEEcccCCHHHHHHHHc
Confidence 7788899999999999999999999888874
No 358
>PRK15115 response regulator GlrR; Provisional
Probab=98.23 E-value=1e-06 Score=103.43 Aligned_cols=171 Identities=22% Similarity=0.352 Sum_probs=98.7
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCcccccccc-----chhhh-------hhHHHHHHHHhCCCcEEE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYI-----GESEK-------NVRDIFQKARSARPCVIF 748 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~-----Gese~-------~v~~lf~~A~~~~p~vlf 748 (934)
...++++|++||||+++|+++.... +.+|+.++|..+...+. |.... ....+|..| ...+||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 233 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGTLF 233 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCEEE
Confidence 4579999999999999999997764 57899999977632211 11100 011123332 345999
Q ss_pred eccccccccCCCCCCCCchhHHHHHHhhhhhccC--------CcCCCCCEEEEEEcCCCCCCChhhhCCCCcceee----
Q 002337 749 FDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG--------LNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLL---- 816 (934)
Q Consensus 749 iDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg--------~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i---- 816 (934)
|||+|.|.+. ....|+..++. ......++.+|+||++. ++..+ ..|+|...+
T Consensus 234 l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~-~~~~f~~~l~~~l 297 (444)
T PRK15115 234 LDEIGDMPAP-------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAM-ARGEFREDLYYRL 297 (444)
T ss_pred EEccccCCHH-------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHH-HcCCccHHHHHhh
Confidence 9999998632 23333333321 11112368999999864 44444 447775443
Q ss_pred ---eecCCCCHHHHHHHH---HHHHhcC----CC-CcCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002337 817 ---YVGVNSDVSYRERVL---KALTRKF----KL-LEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 873 (934)
Q Consensus 817 ---~v~~Pp~~~~r~~Il---~~~~~~~----~~-~~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A 873 (934)
.+.+||-.+++++|- +.+++++ .. ...++-+.+.......|.| .+|++++++|+..+
T Consensus 298 ~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 (444)
T ss_pred ceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 345577777767663 4444332 11 1123323332222344544 78888888876543
No 359
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.21 E-value=5.3e-06 Score=93.36 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=47.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccc-----cch-------HHHHHHHHHHhhcCCCEEEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSE-----RKT-------SAALAQAFNTAQSYSPTILL 461 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~-----g~~-------e~~L~~~f~~A~~~~P~IL~ 461 (934)
..+|||+|++||||+++|+++.... +.+|+.|+|..+..... |.. ...-...|+.| .++.||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~ 98 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLF 98 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEE
Confidence 3459999999999999999997654 46899999986532110 000 00001123333 368999
Q ss_pred Ecchhhccc
Q 002337 462 LRDFDVFRN 470 (934)
Q Consensus 462 IDEID~L~~ 470 (934)
||||+.|..
T Consensus 99 Ldei~~L~~ 107 (329)
T TIGR02974 99 LDELATASL 107 (329)
T ss_pred eCChHhCCH
Confidence 999998765
No 360
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=3.5e-05 Score=86.27 Aligned_cols=130 Identities=12% Similarity=0.203 Sum_probs=84.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC--------cEEEEecCccccccccchHHHHHHHHHHhhc----CCCEEEEE
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGI--------HVVEYSCHNLMASSERKTSAALAQAFNTAQS----YSPTILLL 462 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~--------~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~----~~P~IL~I 462 (934)
+.+..+|++||+|+|||++|+++|+.+-. .+..+... ....-+...++++.+.+.. ...-|++|
T Consensus 24 ~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~----~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI 99 (313)
T PRK05564 24 RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI----NKKSIGVDDIRNIIEEVNKKPYEGDKKVIII 99 (313)
T ss_pred CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc----cCCCCCHHHHHHHHHHHhcCcccCCceEEEE
Confidence 34456899999999999999999998732 22233221 0111223346665554331 23469999
Q ss_pred cchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhc
Q 002337 463 RDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR 542 (934)
Q Consensus 463 DEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrr 542 (934)
|++|.+.. .-...|...++. ....+++|.+|+.++.+.+.+++
T Consensus 100 ~~ad~m~~----------------~a~naLLK~LEe---------------------pp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 100 YNSEKMTE----------------QAQNAFLKTIEE---------------------PPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred echhhcCH----------------HHHHHHHHHhcC---------------------CCCCeEEEEEeCChHhCcHHHHh
Confidence 99987754 112223233321 14455666666788999999999
Q ss_pred ccceEEEcCCCCHHHHHHHHHHhc
Q 002337 543 CFSHEISMGPLTEQQRVEMLSQLL 566 (934)
Q Consensus 543 rF~~eI~i~~Pde~~R~~IL~~ll 566 (934)
|+. .+.+..|++++-...++...
T Consensus 143 Rc~-~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 143 RCQ-IYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred hce-eeeCCCcCHHHHHHHHHHHh
Confidence 985 99999999998877776544
No 361
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=2.8e-05 Score=86.86 Aligned_cols=132 Identities=17% Similarity=0.239 Sum_probs=87.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcE--EEEec--------------Ccccc--cccc--chHHHHHHHHHHhhc-
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHV--VEYSC--------------HNLMA--SSER--KTSAALAQAFNTAQS- 454 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~--~~I~~--------------~~L~~--~~~g--~~e~~L~~~f~~A~~- 454 (934)
.+..+|++||.|+||+++|+++|+.+-..- ..-.| +|+.. ...+ -....+|++.+.+..
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 345689999999999999999999883210 00011 11110 0011 234456665444432
Q ss_pred ---CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecC
Q 002337 455 ---YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAAD 531 (934)
Q Consensus 455 ---~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn 531 (934)
..--|++||++|.+.. .....+|+.+-+ ....+++|-+|+
T Consensus 103 ~~~g~~KV~iI~~a~~m~~---------------~AaNaLLKtLEE----------------------Pp~~~~fiL~t~ 145 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLTE---------------AAANALLKTLEE----------------------PRPNTYFLLQAD 145 (325)
T ss_pred cccCCceEEEEechhhhCH---------------HHHHHHHHHhcC----------------------CCCCeEEEEEEC
Confidence 2336999999998764 122334433322 267788889999
Q ss_pred CCCCCChhhhcccceEEEcCCCCHHHHHHHHHHh
Q 002337 532 SSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQL 565 (934)
Q Consensus 532 ~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~l 565 (934)
.++.|.|.+++|.. .+.+.+|+.++-.+.|+..
T Consensus 146 ~~~~llpTI~SRC~-~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 146 LSAALLPTIYSRCQ-TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred ChHhCchHHHhhce-EEeCCCCCHHHHHHHHHHH
Confidence 99999999999985 8899999999887777654
No 362
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=2.2e-05 Score=88.42 Aligned_cols=142 Identities=17% Similarity=0.217 Sum_probs=90.8
Q ss_pred chHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEE
Q 002337 372 QGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVE 427 (934)
Q Consensus 372 ~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~------------------------~~~ 427 (934)
++.+++.|...+.. -+.+..+||+||+|+||+++++++|+.+-.. +..
T Consensus 11 q~~~~~~L~~~~~~--------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 11 QPVVVKMLQNSIAK--------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred HHHHHHHHHHHHHc--------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 44555666555431 1345567999999999999999999997321 111
Q ss_pred EecCccccccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCcccc
Q 002337 428 YSCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDE 503 (934)
Q Consensus 428 I~~~~L~~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~ 503 (934)
+... + ..-....++++.+.+.. ...-|++|||+|.+.. +....|...++.
T Consensus 83 i~~~---~--~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~----------------~a~NaLLK~LEE----- 136 (329)
T PRK08058 83 VAPD---G--QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA----------------SAANSLLKFLEE----- 136 (329)
T ss_pred eccc---c--ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH----------------HHHHHHHHHhcC-----
Confidence 1110 0 11123455555544431 1346999999997754 122233333332
Q ss_pred ccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHH
Q 002337 504 DEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQ 564 (934)
Q Consensus 504 ~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ 564 (934)
....+++|.+|+.+..|.+.+++|.. .+.+.+|+.++-.+.++.
T Consensus 137 ----------------Pp~~~~~Il~t~~~~~ll~TIrSRc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 ----------------PSGGTTAILLTENKHQILPTILSRCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ----------------CCCCceEEEEeCChHhCcHHHHhhce-eeeCCCCCHHHHHHHHHH
Confidence 15667778888899999999999985 899999999887777653
No 363
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=8.5e-06 Score=91.59 Aligned_cols=132 Identities=19% Similarity=0.204 Sum_probs=88.0
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHcCCcEE-----------------EecCccccccc--------------------
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFL-----------------SVKGPELINMY-------------------- 724 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~~~~~i-----------------~v~~~~l~~~~-------------------- 724 (934)
+.+..+||+||+|+||+++|+++|+.+....- .-+-+|+.--.
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 55778999999999999999999987633210 00001211000
Q ss_pred --cch---------hhhhhHHHHHHHH----hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCC
Q 002337 725 --IGE---------SEKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQD 789 (934)
Q Consensus 725 --~Ge---------se~~v~~lf~~A~----~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~ 789 (934)
-|. .-..+|++.+.+. .+...|++||++|.+. ...-|.||+.++.- ..+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-------------~~AaNaLLKtLEEP---p~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN-------------VAAANALLKTLEEP---PPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC-------------HHHHHHHHHHhcCC---CcC
Confidence 000 1134566655442 2334599999999985 23567888887753 456
Q ss_pred EEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHH
Q 002337 790 LFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKA 833 (934)
Q Consensus 790 v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~ 833 (934)
+++|.+|++|+.|.|.+++ |. ..+.|+. |+.++..+.|..
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~-~~~~~~~~~L~~ 202 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTV-PAPEAAAAWLAA 202 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecC-CCHHHHHHHHHH
Confidence 7888899999999999999 98 6788884 667777777654
No 364
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.20 E-value=2.4e-06 Score=101.09 Aligned_cols=171 Identities=19% Similarity=0.254 Sum_probs=99.1
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCcccccc-----ccchhhhh-------hHHHHHHHHhCCCcEEE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM-----YIGESEKN-------VRDIFQKARSARPCVIF 748 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~-----~~Gese~~-------v~~lf~~A~~~~p~vlf 748 (934)
...+++.|++||||+++|+++.... +.+|+.++|..+... .+|..... ....|.. .....||
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~ 237 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLF 237 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEE
Confidence 5679999999999999999998765 468999999876322 12211100 0112332 2345899
Q ss_pred eccccccccCCCCCCCCchhHHHHHHhhhhhccC--------CcCCCCCEEEEEEcCCCC-------CCChhhhCCCCcc
Q 002337 749 FDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG--------LNDSSQDLFIIGASNRPD-------LIDPALLRPGRFD 813 (934)
Q Consensus 749 iDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg--------~~~~~~~v~vI~aTNrp~-------~lD~allrpGRfd 813 (934)
|||+|.+... +...|+..++. ......++.+|+||+..- .+.+.|.. ||.
T Consensus 238 l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~ 302 (469)
T PRK10923 238 LDEIGDMPLD-------------VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN 302 (469)
T ss_pred EeccccCCHH-------------HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc
Confidence 9999998632 33344433332 111234689999998642 23334443 442
Q ss_pred eeeeecCCCCHHHHHHHH---HHHHhcC----CCC-cCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002337 814 KLLYVGVNSDVSYRERVL---KALTRKF----KLL-EDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 873 (934)
Q Consensus 814 ~~i~v~~Pp~~~~r~~Il---~~~~~~~----~~~-~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A 873 (934)
.+.+.+||-.+++++|. ..+++++ ... ..++-+.+...+...|.| ++|++++++|...+
T Consensus 303 -~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 303 -VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred -ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 24555577777666653 3444332 111 123333333333456766 89999999887654
No 365
>PRK08181 transposase; Validated
Probab=98.20 E-value=1.7e-06 Score=94.22 Aligned_cols=101 Identities=22% Similarity=0.370 Sum_probs=66.1
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccc-hhhhhhHHHHHHHHhCCCcEEEeccccccccC
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIG-ESEKNVRDIFQKARSARPCVIFFDELDSLAPA 758 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~G-ese~~v~~lf~~A~~~~p~vlfiDEid~l~~~ 758 (934)
.+.+++|+||||||||+||.+++.++ +..+++++.++|+..+.. ..+....+.++... .+.+|+|||++.+...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKD 182 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCC
Confidence 35789999999999999999998654 677888888888775432 12233444555443 4579999999876532
Q ss_pred CCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCC
Q 002337 759 RGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 799 (934)
Q Consensus 759 r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp 799 (934)
. .....+-+++...-+ . + -+|.|||.+
T Consensus 183 ~--------~~~~~Lf~lin~R~~---~-~--s~IiTSN~~ 209 (269)
T PRK08181 183 Q--------AETSVLFELISARYE---R-R--SILITANQP 209 (269)
T ss_pred H--------HHHHHHHHHHHHHHh---C-C--CEEEEcCCC
Confidence 1 123345555544221 1 2 256688876
No 366
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.20 E-value=4e-06 Score=89.36 Aligned_cols=140 Identities=19% Similarity=0.292 Sum_probs=76.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCC
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESL 477 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~ 477 (934)
.+-.++||+|||||..+|.+|..+|.+++.++|.+-+ ....+.++|.-+.. .++|+.+||++.|..
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~~~-~GaW~cfdefnrl~~------- 98 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGLAQ-SGAWLCFDEFNRLSE------- 98 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHH-HT-EEEEETCCCSSH-------
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHHhh-cCchhhhhhhhhhhH-------
Confidence 3468999999999999999999999999999998633 45567777765553 589999999997754
Q ss_pred CCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCC----CCCChhhhcccceEEEcCCC
Q 002337 478 PNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS----EGLPPTIRRCFSHEISMGPL 553 (934)
Q Consensus 478 ~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~----~~Ld~aLrrrF~~eI~i~~P 553 (934)
...+-+.+.+..+........ ...... ......+...-+..|.|.. ..||+.++..| |.+.+-.|
T Consensus 99 -----~vLS~i~~~i~~i~~al~~~~----~~~~~~-g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~P 167 (231)
T PF12774_consen 99 -----EVLSVISQQIQSIQDALRAKQ----KSFTLE-GQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVP 167 (231)
T ss_dssp -----HHHHHHHHHHHHHHHHHHCTS----SEEEET-TCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S-
T ss_pred -----HHHHHHHHHHHHHHHhhcccc----cccccC-CCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCC
Confidence 112222222222211100000 000000 0001112233444555533 45899998888 69999999
Q ss_pred CHHHHHHHH
Q 002337 554 TEQQRVEML 562 (934)
Q Consensus 554 de~~R~~IL 562 (934)
|...-.+++
T Consensus 168 D~~~I~ei~ 176 (231)
T PF12774_consen 168 DLSLIAEIL 176 (231)
T ss_dssp -HHHHHHHH
T ss_pred CHHHHHHHH
Confidence 887766554
No 367
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.19 E-value=3.2e-06 Score=99.75 Aligned_cols=174 Identities=18% Similarity=0.255 Sum_probs=99.4
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccc-----cchhhh----hhHHHHHHHHhCCCcEEEecc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMY-----IGESEK----NVRDIFQKARSARPCVIFFDE 751 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~-----~Gese~----~v~~lf~~A~~~~p~vlfiDE 751 (934)
...+++.|.+||||+++|+++.... +.+|+.++|..+...+ +|.... ...............+|||||
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEc
Confidence 4578999999999999999997664 5689999987663221 221110 000000011223457999999
Q ss_pred ccccccCCCCCCCCchhHHHHHHhhhhhccC--------CcCCCCCEEEEEEcCCCCCCChhhhCCCCcce-------ee
Q 002337 752 LDSLAPARGASGDSGGVMDRVVSQMLAEIDG--------LNDSSQDLFIIGASNRPDLIDPALLRPGRFDK-------LL 816 (934)
Q Consensus 752 id~l~~~r~~~~~~~~~~~~v~~~lL~~ldg--------~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~-------~i 816 (934)
++.+... +...|+..++. ......++.||++|+..- +.+.+.|+|.. .+
T Consensus 237 i~~l~~~-------------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l---~~~~~~~~f~~~L~~rl~~~ 300 (463)
T TIGR01818 237 IGDMPLD-------------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNL---EALVRQGKFREDLFHRLNVI 300 (463)
T ss_pred hhhCCHH-------------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCH---HHHHHcCCcHHHHHHHhCcc
Confidence 9998632 22333333221 111123688999998652 23344456642 24
Q ss_pred eecCCCCHHHHHHHH---HHHHhcC----CC-CcCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002337 817 YVGVNSDVSYRERVL---KALTRKF----KL-LEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 873 (934)
Q Consensus 817 ~v~~Pp~~~~r~~Il---~~~~~~~----~~-~~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A 873 (934)
.+.+||-.+++++|- ..+++++ .. ...++-+.+......+|.| ++|++++.+|+..|
T Consensus 301 ~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 301 RIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred eecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 555667666555553 3333332 11 1223433343333467766 89999999888765
No 368
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.19 E-value=2.9e-06 Score=99.49 Aligned_cols=171 Identities=21% Similarity=0.325 Sum_probs=99.8
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccc-----cchhhhh----h---HHHHHHHHhCCCcEEE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMY-----IGESEKN----V---RDIFQKARSARPCVIF 748 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~-----~Gese~~----v---~~lf~~A~~~~p~vlf 748 (934)
...++++|.+||||+++|+++.... +.+|+.++|..+...+ +|..... . ...|. .+..++||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ 238 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV---EADGGTLF 238 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCcee---ECCCCEEE
Confidence 4689999999999999999996544 5789999997653322 1211100 0 01122 33467999
Q ss_pred eccccccccCCCCCCCCchhHHHHHHhhhhhccCC--------cCCCCCEEEEEEcCCCCCCChhhhCCCCcce------
Q 002337 749 FDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL--------NDSSQDLFIIGASNRPDLIDPALLRPGRFDK------ 814 (934)
Q Consensus 749 iDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~--------~~~~~~v~vI~aTNrp~~lD~allrpGRfd~------ 814 (934)
||||+.+.+. +...|+..++.- .....++.+|+||+++- ..+..+|+|..
T Consensus 239 ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l 302 (441)
T PRK10365 239 LDEIGDISPM-------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFRQDLYYRL 302 (441)
T ss_pred EeccccCCHH-------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHh
Confidence 9999999632 223333333221 11123678999998742 34556678865
Q ss_pred -eeeecCCCCHHHHHHHH---HHHHhcC----CC-CcCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002337 815 -LLYVGVNSDVSYRERVL---KALTRKF----KL-LEDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 873 (934)
Q Consensus 815 -~i~v~~Pp~~~~r~~Il---~~~~~~~----~~-~~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A 873 (934)
.+.+.+||-.+++++|. +.+++++ .. ...++-..+.......|.| .+|.+++++|+..+
T Consensus 303 ~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~ 372 (441)
T PRK10365 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL 372 (441)
T ss_pred ccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 34566678777776654 3333332 11 1123333333333356644 78888888776543
No 369
>PF13173 AAA_14: AAA domain
Probab=98.18 E-value=8.4e-06 Score=78.88 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=47.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhC--CcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLG--IHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVF 468 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg--~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L 468 (934)
..++|+||.||||||+++.+++.+. -+++.+++.+.......... +.+.+.......+.++||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4589999999999999999999886 77888888754332111111 223332222226789999999865
No 370
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.16 E-value=1.6e-06 Score=89.80 Aligned_cols=25 Identities=48% Similarity=0.804 Sum_probs=20.1
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC 708 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~ 708 (934)
+.++|++||||||||++|+++...+
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 4699999999999999999998765
No 371
>PRK06526 transposase; Provisional
Probab=98.15 E-value=2.1e-06 Score=93.00 Aligned_cols=101 Identities=21% Similarity=0.300 Sum_probs=63.0
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccch-hhhhhHHHHHHHHhCCCcEEEeccccccccC
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGE-SEKNVRDIFQKARSARPCVIFFDELDSLAPA 758 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Ge-se~~v~~lf~~A~~~~p~vlfiDEid~l~~~ 758 (934)
.+.+++|+||||||||++|.+++.++ +..+..++.++++...... ....+...+... ..+.+|+|||++.+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~ 174 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE 174 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC
Confidence 46789999999999999999998764 6666667766665543211 111223333332 34679999999887532
Q ss_pred CCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCC
Q 002337 759 RGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 799 (934)
Q Consensus 759 r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp 799 (934)
+ ....++.+++..... . . -+|.|||.+
T Consensus 175 ~--------~~~~~L~~li~~r~~---~-~--s~IitSn~~ 201 (254)
T PRK06526 175 P--------EAANLFFQLVSSRYE---R-A--SLIVTSNKP 201 (254)
T ss_pred H--------HHHHHHHHHHHHHHh---c-C--CEEEEcCCC
Confidence 1 123455555544221 1 2 266689886
No 372
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=5.4e-05 Score=84.49 Aligned_cols=150 Identities=14% Similarity=0.152 Sum_probs=93.7
Q ss_pred cCCchHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcE----EEEe-c--------Ccccc
Q 002337 369 VPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHV----VEYS-C--------HNLMA 435 (934)
Q Consensus 369 ~~~~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~----~~I~-~--------~~L~~ 435 (934)
.|......+.+...+.. -+.+..+||+||+|+||+++|+++|+.+-..- .... | +|+.-
T Consensus 6 yPW~~~~~~~l~~~~~~--------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 6 SPWQQRAYDQTVAALDA--------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred cccHHHHHHHHHHHHHc--------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 35555566666555432 13445689999999999999999999873210 0000 0 11110
Q ss_pred -----cccc------chHHHHHHHHHHhhcC----CCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCc
Q 002337 436 -----SSER------KTSAALAQAFNTAQSY----SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSA 500 (934)
Q Consensus 436 -----~~~g------~~e~~L~~~f~~A~~~----~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~ 500 (934)
...+ -....++++.+.+... .--|++||++|.+.. +....+|+.+-+
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--- 139 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINR---------------AACNALLKTLEE--- 139 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH---------------HHHHHHHHHhhC---
Confidence 0001 1234555555544321 236999999998864 122333433222
Q ss_pred cccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHH
Q 002337 501 EDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQ 564 (934)
Q Consensus 501 ~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ 564 (934)
....+++|-+|+.++.|.|.+++|+. .+.++.|+.++-.+.|..
T Consensus 140 -------------------Pp~~~~fiL~~~~~~~lLpTIrSRCq-~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 140 -------------------PSPGRYLWLISAQPARLPATIRSRCQ-RLEFKLPPAHEALAWLLA 183 (319)
T ss_pred -------------------CCCCCeEEEEECChhhCchHHHhhhe-EeeCCCcCHHHHHHHHHH
Confidence 15667888888999999999999995 889999999877776654
No 373
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.14 E-value=2.2e-05 Score=79.25 Aligned_cols=117 Identities=17% Similarity=0.246 Sum_probs=73.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC-----------------------cEEEEecCccccccccchHHHHHHHHHH
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGI-----------------------HVVEYSCHNLMASSERKTSAALAQAFNT 451 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~-----------------------~~~~I~~~~L~~~~~g~~e~~L~~~f~~ 451 (934)
+.+..+||+||+|+||+++|+++|+.+-. ++..++..+-. ..-....++.+...
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~---~~i~i~~ir~i~~~ 93 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK---KSIKIDQIREIIEF 93 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS---SSBSHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc---chhhHHHHHHHHHH
Confidence 44556899999999999999999998721 23333222110 01234556666555
Q ss_pred hhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEE
Q 002337 452 AQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLV 527 (934)
Q Consensus 452 A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVI 527 (934)
+.. ...-|++||++|.+.. +....|...++. ....+.+|
T Consensus 94 ~~~~~~~~~~KviiI~~ad~l~~----------------~a~NaLLK~LEe---------------------pp~~~~fi 136 (162)
T PF13177_consen 94 LSLSPSEGKYKVIIIDEADKLTE----------------EAQNALLKTLEE---------------------PPENTYFI 136 (162)
T ss_dssp CTSS-TTSSSEEEEEETGGGS-H----------------HHHHHHHHHHHS---------------------TTTTEEEE
T ss_pred HHHHHhcCCceEEEeehHhhhhH----------------HHHHHHHHHhcC---------------------CCCCEEEE
Confidence 442 2356999999998764 333334344332 25678999
Q ss_pred EecCCCCCCChhhhcccceEEEcCC
Q 002337 528 AAADSSEGLPPTIRRCFSHEISMGP 552 (934)
Q Consensus 528 atTn~~~~Ld~aLrrrF~~eI~i~~ 552 (934)
.+|+.++.|.+.+++|+. .+.+++
T Consensus 137 L~t~~~~~il~TI~SRc~-~i~~~~ 160 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQ-VIRFRP 160 (162)
T ss_dssp EEES-GGGS-HHHHTTSE-EEEE--
T ss_pred EEECChHHChHHHHhhce-EEecCC
Confidence 999999999999999975 666654
No 374
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=4.2e-05 Score=86.19 Aligned_cols=149 Identities=16% Similarity=0.211 Sum_probs=94.2
Q ss_pred CCchHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc-------EEEE---------ecCcc
Q 002337 370 PLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH-------VVEY---------SCHNL 433 (934)
Q Consensus 370 ~~~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~-------~~~I---------~~~~L 433 (934)
|+..+..+++...+.. -+.+..+|++||+|+||+++|+++|+.+-.. .... +-+|+
T Consensus 5 PWl~~~~~~l~~~~~~--------~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (334)
T PRK07993 5 PWLRPDYEQLVGSYQA--------GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY 76 (334)
T ss_pred CCChHHHHHHHHHHHc--------CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 3444455555544422 1344568999999999999999999998321 1100 00111
Q ss_pred ccc--c---ccchHHHHHHHHHHhh----cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccc
Q 002337 434 MAS--S---ERKTSAALAQAFNTAQ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDED 504 (934)
Q Consensus 434 ~~~--~---~g~~e~~L~~~f~~A~----~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~ 504 (934)
.-- . ..-+...+|++.+.+. ...--|++||+.|.+.. .....+|+.+-++
T Consensus 77 ~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEP------ 135 (334)
T PRK07993 77 YTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTD---------------AAANALLKTLEEP------ 135 (334)
T ss_pred EEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCH---------------HHHHHHHHHhcCC------
Confidence 110 0 0123445555554443 22346999999998764 1223344333222
Q ss_pred cccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHH
Q 002337 505 EESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQ 564 (934)
Q Consensus 505 ~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ 564 (934)
...+++|-.|++++.|.|.+++|.. .+.+++|+.++..+.|..
T Consensus 136 ----------------p~~t~fiL~t~~~~~lLpTIrSRCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 136 ----------------PENTWFFLACREPARLLATLRSRCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred ----------------CCCeEEEEEECChhhChHHHHhccc-cccCCCCCHHHHHHHHHH
Confidence 6778899999999999999999986 789999999887777754
No 375
>PRK09183 transposase/IS protein; Provisional
Probab=98.13 E-value=3.6e-06 Score=91.56 Aligned_cols=75 Identities=23% Similarity=0.426 Sum_probs=53.9
Q ss_pred CCCCCcceecCCCCCcchHHHHHHHHH---cCCcEEEecCccccccccc-hhhhhhHHHHHHHHhCCCcEEEeccccccc
Q 002337 681 LRKRSGVLLYGPPGTGKTLLAKAVATE---CSLNFLSVKGPELINMYIG-ESEKNVRDIFQKARSARPCVIFFDELDSLA 756 (934)
Q Consensus 681 ~~~~~~iLl~GppGtGKT~lakalA~~---~~~~~i~v~~~~l~~~~~G-ese~~v~~lf~~A~~~~p~vlfiDEid~l~ 756 (934)
+..+.+++|+||||||||+++.+++.. .+..+..++.+++...+.. .....+..+|+.. ...+.+++|||++...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 345679999999999999999999765 3667778887777654432 1223355566554 3467899999998764
No 376
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.13 E-value=1.3e-05 Score=97.00 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=69.7
Q ss_pred CCEEEEEEcCCC--CCCChhhhCCCCcc---eeeeecC--CCCHHHHHHHHHHHHhcCC---CCcCCCHHH---HHhhCC
Q 002337 788 QDLFIIGASNRP--DLIDPALLRPGRFD---KLLYVGV--NSDVSYRERVLKALTRKFK---LLEDVSLYS---IAKKCP 854 (934)
Q Consensus 788 ~~v~vI~aTNrp--~~lD~allrpGRfd---~~i~v~~--Pp~~~~r~~Il~~~~~~~~---~~~~~~l~~---la~~~t 854 (934)
.++.||+++|+. ..+||+|.. ||. ..+++.- +...+.+..+++...+... ....++-+. +.+..+
T Consensus 276 ~dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~ 353 (637)
T PRK13765 276 CDFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAK 353 (637)
T ss_pred eeeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHH
Confidence 368899999985 467999988 886 4555542 3445666666654443321 122333222 222110
Q ss_pred --CC------CCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhhCCCcCHHHHHHHHH
Q 002337 855 --PN------FTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYEL 924 (934)
Q Consensus 855 --~g------~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~psvs~~~l~~y~~ 924 (934)
.| ..-++|..|+++|...|..+. ...++.+|..+|+.. ..++.++.++.|-.
T Consensus 354 R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~-----------------~~~i~~~~v~~a~~~-~~~i~~~~~~~~l~ 413 (637)
T PRK13765 354 RRAGRKGHLTLKLRDLGGLVRVAGDIARSEG-----------------AELTTAEHVLEAKKI-ARSIEQQLADRYIE 413 (637)
T ss_pred HHhCCccccccCHHHHHHHHHHHHHHHHhhc-----------------cceecHHHHHHHHHh-hhhhhHHHHHHHhC
Confidence 11 235788889998877665431 235788999988854 34566666666654
No 377
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.13 E-value=7.3e-07 Score=106.34 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=29.4
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
+.+..+.-+.|.||+|+|||||++++++.+...-++|
T Consensus 25 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i 61 (501)
T PRK10762 25 LNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI 61 (501)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 3344555699999999999999999999986655544
No 378
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.12 E-value=3.1e-05 Score=93.43 Aligned_cols=170 Identities=12% Similarity=0.143 Sum_probs=90.9
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEE-ecCc---cccccc------------cchhhhhhHHHHHHHHh-----
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLS-VKGP---ELINMY------------IGESEKNVRDIFQKARS----- 741 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~-v~~~---~l~~~~------------~Gese~~v~~lf~~A~~----- 741 (934)
++..++|+||||||||++++++|++++..++. ++.. .....| +-.....++.++..|..
T Consensus 109 ~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~ 188 (637)
T TIGR00602 109 PKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQML 188 (637)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhccc
Confidence 34458999999999999999999998766543 1111 000001 01122334555555542
Q ss_pred -----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhh-hccCCcCCCCCEEEEEEcC-CCC--------------
Q 002337 742 -----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLA-EIDGLNDSSQDLFIIGASN-RPD-------------- 800 (934)
Q Consensus 742 -----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~-~ldg~~~~~~~v~vI~aTN-rp~-------------- 800 (934)
....||||||++.+... + .+.+..+|. ... . . ..+.+|++++ .|.
T Consensus 189 g~~~~~~~~IILIDEiPn~~~r-~---------~~~lq~lLr~~~~--e-~-~~~pLI~I~TE~~~~~~~~~~~~f~~~~ 254 (637)
T TIGR00602 189 GDDLMTDKKIILVEDLPNQFYR-D---------TRALHEILRWKYV--S-I-GRCPLVFIITESLEGDNNQRRLLFPAET 254 (637)
T ss_pred ccccCCceeEEEeecchhhchh-h---------HHHHHHHHHHHhh--c-C-CCceEEEEecCCccccccccccccchhc
Confidence 24579999999988632 1 123333433 211 1 1 2233443333 221
Q ss_pred CCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCC--CCcC------CCHHHHHhhCCCCCCHHHHHHHHHHHHHH
Q 002337 801 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFK--LLED------VSLYSIAKKCPPNFTGADMYALCADAWFH 872 (934)
Q Consensus 801 ~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~--~~~~------~~l~~la~~~t~g~sgaDl~~l~~~A~~~ 872 (934)
.|.++++..-|. .+|.|+ |.....-...|+..+++.. ...+ ..+..++.. +++|++.++..-.+.
T Consensus 255 lL~~eLls~~rv-~~I~Fn-Pia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~-----s~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 255 IMNKEILEEPRV-SNISFN-PIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQG-----CSGDIRSAINSLQFS 327 (637)
T ss_pred ccCHhHhcccce-eEEEeC-CCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHh-----CCChHHHHHHHHHHH
Confidence 134777741133 367777 5777775555555554321 1111 134455553 578999888754443
Q ss_pred H
Q 002337 873 A 873 (934)
Q Consensus 873 A 873 (934)
+
T Consensus 328 ~ 328 (637)
T TIGR00602 328 S 328 (637)
T ss_pred H
Confidence 3
No 379
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.12 E-value=1.6e-05 Score=89.41 Aligned_cols=142 Identities=15% Similarity=0.147 Sum_probs=79.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccc-----cch-------HHHHHHHHHHhhcCCCEEEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSE-----RKT-------SAALAQAFNTAQSYSPTILL 461 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~-----g~~-------e~~L~~~f~~A~~~~P~IL~ 461 (934)
+.+|||+|++||||+++|+++-... +.+|+.++|..+..... |.. .......++.| .++.||
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~ 105 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLF 105 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhcc---CCCeEE
Confidence 3459999999999999999997654 46899999986532100 000 00001123322 367899
Q ss_pred EcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCC-------C
Q 002337 462 LRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-------E 534 (934)
Q Consensus 462 IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~-------~ 534 (934)
|||++.|.. .+...|.++++... +............+.+|++|+.. .
T Consensus 106 l~~i~~L~~----------------~~Q~~L~~~l~~~~----------~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g 159 (326)
T PRK11608 106 LDELATAPM----------------LVQEKLLRVIEYGE----------LERVGGSQPLQVNVRLVCATNADLPAMVAEG 159 (326)
T ss_pred eCChhhCCH----------------HHHHHHHHHHhcCc----------EEeCCCCceeeccEEEEEeCchhHHHHHHcC
Confidence 999998865 22333333332100 00000001113357888888664 2
Q ss_pred CCChhhhccc-ceEEEcCCCCHH--HHHHHHHHhcc
Q 002337 535 GLPPTIRRCF-SHEISMGPLTEQ--QRVEMLSQLLQ 567 (934)
Q Consensus 535 ~Ld~aLrrrF-~~eI~i~~Pde~--~R~~IL~~ll~ 567 (934)
.+.+.+..+| ...|.+|+..+. +...++.+++.
T Consensus 160 ~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~ 195 (326)
T PRK11608 160 KFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAI 195 (326)
T ss_pred CchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHH
Confidence 3566777777 446677765542 33445555543
No 380
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.10 E-value=5.7e-06 Score=99.43 Aligned_cols=31 Identities=29% Similarity=0.275 Sum_probs=26.7
Q ss_pred hcCCCCCCcceecCCCCCcchHHHHHHHHHc
Q 002337 678 SSGLRKRSGVLLYGPPGTGKTLLAKAVATEC 708 (934)
Q Consensus 678 ~~~~~~~~~iLl~GppGtGKT~lakalA~~~ 708 (934)
+..+.++.-+.|.||+|+|||||+++++...
T Consensus 306 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 336 (529)
T PRK15134 306 SFTLRPGETLGLVGESGSGKSTTGLALLRLI 336 (529)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 3466778889999999999999999999754
No 381
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.10 E-value=8.4e-07 Score=106.01 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=29.1
Q ss_pred cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEe
Q 002337 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (934)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~ 429 (934)
.+..+.-+.|.||+|+|||||++++++.+...-+.|.
T Consensus 33 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~ 69 (510)
T PRK15439 33 TLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLE 69 (510)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3444455999999999999999999998866555543
No 382
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.10 E-value=7.6e-06 Score=90.69 Aligned_cols=310 Identities=21% Similarity=0.254 Sum_probs=149.4
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc-------EEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcc
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH-------VVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRD 464 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~-------~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDE 464 (934)
|.+..+..+.|+|.+|+|||..+.++-+.+..+ -+..++.++.. .++..++. .+.+.-+.||-+=
T Consensus 31 f~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~----~se~~lr~----iRG~~I~MIFQEP 102 (534)
T COG4172 31 FDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA----ASERQLRG----VRGNKIGMIFQEP 102 (534)
T ss_pred eeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc----CCHHHHhh----hcccceEEEeccc
Confidence 344556679999999999999999999988431 23444544443 23333332 2334446666555
Q ss_pred hhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhh--hc
Q 002337 465 FDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTI--RR 542 (934)
Q Consensus 465 ID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aL--rr 542 (934)
.-+|.|.. .....+.+.|.---. +.. . .......... ..-+|+..- ..
T Consensus 103 MtSLNPl~----------tIg~Qi~E~l~~Hrg-~~~---~-----~Ar~r~lelL-----------~~VgI~~p~~rl~ 152 (534)
T COG4172 103 MTSLNPLH----------TIGKQLAEVLRLHRG-LSR---A-----AARARALELL-----------ELVGIPEPEKRLD 152 (534)
T ss_pred ccccCcHh----------HHHHHHHHHHHHHhc-ccH---H-----HHHHHHHHHH-----------HHcCCCchhhhhh
Confidence 55544411 112222222211100 000 0 0000000000 011234333 34
Q ss_pred ccceEEEcCCCCHHHHHHHHHHhccccccccCCCC-------chHHHHHHHhh---cCC----CChHHHHHHHHHHHHHH
Q 002337 543 CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTG-------SEEFVKDIIGQ---TSG----FMPRDLHALVADAGANL 608 (934)
Q Consensus 543 rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~-------~~~~L~~la~~---t~G----fv~~DL~~L~~~A~~~a 608 (934)
.|.|+++.| +.||..|...+...+..+..|.. ....+-++.+. -.| |..|||.-+-+-|-..+
T Consensus 153 ~yPHeLSGG---qRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~ 229 (534)
T COG4172 153 AYPHELSGG---QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVY 229 (534)
T ss_pred hCCcccCcc---hhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEE
Confidence 799999999 99999999999988777744432 22222222221 223 78899876655544333
Q ss_pred HHhhcccccCCC------CCchhhhhhhhccCcchhh------hhhcCCHHHHHHHHHhhhcccccccCCCC---Cccch
Q 002337 609 IRKSNSEVDKNE------PGESDLTAKVAHNDNSSIA------ATQVMGKEDLVKAMERSKKRNASALGAPK---LPLLH 673 (934)
Q Consensus 609 i~r~~~~~~~~~------~~~~~l~~~~~~~~~~~~~------~~~~i~~ed~~~aL~~~k~~~~~~i~~pk---~pl~~ 673 (934)
+.+.....+... ...+.+...+.+..+.... ....+..+++ +-.+.-.-|..+ -++..
T Consensus 230 VM~~G~ivE~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v-------~v~f~i~~g~~~r~~~~~~A 302 (534)
T COG4172 230 VMQHGEIVETGTTETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDL-------RVWFPIKGGFLRRTVDHLRA 302 (534)
T ss_pred EEeccEEeecCcHHHHhhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecce-------EEEEecCCccccccchheEE
Confidence 322111111100 0011111111111111100 0001111111 000000000000 11111
Q ss_pred hHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHcCCc-EEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccc
Q 002337 674 KDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLN-FLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDEL 752 (934)
Q Consensus 674 ~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~-~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEi 752 (934)
-+-.+..++++..+-+.|.+|+||||+.+++....... -|...+.++. |.+.+..+-+ ...--|+|=|-.
T Consensus 303 Vd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~----~~~~~~mrpl-----R~~mQvVFQDPy 373 (534)
T COG4172 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDID----GLSRKEMRPL-----RRRMQVVFQDPY 373 (534)
T ss_pred eccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccc----ccChhhhhhh-----hhhceEEEeCCC
Confidence 22234467788999999999999999999998876432 4555555552 2333333222 112249999999
Q ss_pred cccccC
Q 002337 753 DSLAPA 758 (934)
Q Consensus 753 d~l~~~ 758 (934)
.+|.|+
T Consensus 374 gSLsPR 379 (534)
T COG4172 374 GSLSPR 379 (534)
T ss_pred CCCCcc
Confidence 999875
No 383
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.09 E-value=2.6e-06 Score=101.32 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=25.8
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHH
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATE 707 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~ 707 (934)
..+.++..+.|.||+|+||||+.++++..
T Consensus 281 l~i~~Ge~~~i~G~NGsGKSTLl~~l~G~ 309 (490)
T PRK10938 281 WQVNPGEHWQIVGPNGAGKSTLLSLITGD 309 (490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45677889999999999999999999974
No 384
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.09 E-value=5.2e-05 Score=91.93 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=24.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCc
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIH 424 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~ 424 (934)
+++|+||||||||++++++|+.++.+
T Consensus 39 ~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 39 NVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCch
Confidence 69999999999999999999999754
No 385
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.09 E-value=1.6e-05 Score=76.48 Aligned_cols=72 Identities=18% Similarity=0.353 Sum_probs=47.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh--------CCcEEEEecCccccc--------------ccc--chHHHHHHHHHHh
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL--------GIHVVEYSCHNLMAS--------------SER--KTSAALAQAFNTA 452 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el--------g~~~~~I~~~~L~~~--------------~~g--~~e~~L~~~f~~A 452 (934)
+..++++||+|+|||++++.++..+ ..+++.++++..... ... ........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3568999999999999999999988 678888887743310 001 1223334444444
Q ss_pred hcCCCEEEEEcchhhc
Q 002337 453 QSYSPTILLLRDFDVF 468 (934)
Q Consensus 453 ~~~~P~IL~IDEID~L 468 (934)
......+|+|||+|.+
T Consensus 84 ~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHCTEEEEEEETTHHH
T ss_pred HhcCCeEEEEeChHhc
Confidence 4444469999999986
No 386
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=9.2e-05 Score=82.57 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=94.5
Q ss_pred CCchHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----------------------cEE
Q 002337 370 PLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGI-----------------------HVV 426 (934)
Q Consensus 370 ~~~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~-----------------------~~~ 426 (934)
|...+..+.+...+.. -+.+..+||+||.|+||+++|+++|+.+-. ++.
T Consensus 6 PWl~~~~~~l~~~~~~--------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~ 77 (319)
T PRK06090 6 PWLVPVWQNWKAGLDA--------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLH 77 (319)
T ss_pred ccHHHHHHHHHHHHHc--------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEE
Confidence 4445555666554421 244556899999999999999999998732 122
Q ss_pred EEecCccccccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccc
Q 002337 427 EYSCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAED 502 (934)
Q Consensus 427 ~I~~~~L~~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~ 502 (934)
.+.... ....-+...+|++.+.+.. ..--|++||++|.+.. ..-..+|+.+-++
T Consensus 78 ~i~p~~---~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEP---- 135 (319)
T PRK06090 78 VIKPEK---EGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE---------------SASNALLKTLEEP---- 135 (319)
T ss_pred EEecCc---CCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCH---------------HHHHHHHHHhcCC----
Confidence 221110 0001233455555444332 2236999999998764 1223334333222
Q ss_pred cccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHH
Q 002337 503 EDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQ 564 (934)
Q Consensus 503 ~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ 564 (934)
..++++|-.|++++.+.|.+++|+. .+.+++|+.++..+.++.
T Consensus 136 ------------------p~~t~fiL~t~~~~~lLpTI~SRCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 136 ------------------APNCLFLLVTHNQKRLLPTIVSRCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred ------------------CCCeEEEEEECChhhChHHHHhcce-eEeCCCCCHHHHHHHHHH
Confidence 6678899999999999999999995 899999999888777754
No 387
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=2.4e-05 Score=87.80 Aligned_cols=131 Identities=15% Similarity=0.206 Sum_probs=84.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC-------------------------cEEEEecCcccccccc-----chHHH
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGI-------------------------HVVEYSCHNLMASSER-----KTSAA 444 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~-------------------------~~~~I~~~~L~~~~~g-----~~e~~ 444 (934)
+.+..+||+||+|+|||++++.+|+.+.. +++.++...-. ...| -....
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 55667999999999999999999999732 23333221000 0001 13456
Q ss_pred HHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhh
Q 002337 445 LAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKIC 520 (934)
Q Consensus 445 L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~ 520 (934)
+|++.+.+.. ...-|++||+++.+.+. ....+.+.|++.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~------------a~naLLk~LEep------------------------- 140 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQ------------AANSLLKVLEEP------------------------- 140 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCHH------------HHHHHHHHHHhC-------------------------
Confidence 6776665542 22358899999977541 112222222211
Q ss_pred cccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHH
Q 002337 521 RQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQ 564 (934)
Q Consensus 521 ~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ 564 (934)
...+.+|.+|+.++.+.+.+++|+. .+.+++|+.++..+.|+.
T Consensus 141 ~~~~~~Ilvth~~~~ll~ti~SRc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 141 PPQVVFLLVSHAADKVLPTIKSRCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred cCCCEEEEEeCChHhChHHHHHHhh-hhcCCCCCHHHHHHHHHh
Confidence 2335677788899999999999885 889999999887777754
No 388
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.08 E-value=2e-05 Score=89.44 Aligned_cols=185 Identities=19% Similarity=0.227 Sum_probs=101.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHH----hCCcEEEEecCcccccccc---------c---hHHHHHHHHHHhhcCCCE
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARR----LGIHVVEYSCHNLMASSER---------K---TSAALAQAFNTAQSYSPT 458 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~e----lg~~~~~I~~~~L~~~~~g---------~---~e~~L~~~f~~A~~~~P~ 458 (934)
+.+.+||++|++||||+.+|+.|... .+.+|+.+||..+...... . ....-..+|+.| ..+
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GG 175 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGG 175 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheec---CCC
Confidence 44567999999999999999998643 3678999999865432111 0 011112234433 368
Q ss_pred EEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC--CC
Q 002337 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE--GL 536 (934)
Q Consensus 459 IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~--~L 536 (934)
.||+|||..+-+ +....|-++++... ....++ .......|.+|+||+..- .+
T Consensus 176 tLfLDEI~~LP~----------------~~Q~kLl~~le~g~---~~rvG~-------~~~~~~dVRli~AT~~~l~~~~ 229 (403)
T COG1221 176 TLFLDEIHRLPP----------------EGQEKLLRVLEEGE---YRRVGG-------SQPRPVDVRLICATTEDLEEAV 229 (403)
T ss_pred EEehhhhhhCCH----------------hHHHHHHHHHHcCc---eEecCC-------CCCcCCCceeeeccccCHHHHH
Confidence 999999998865 22333333433210 000111 122356788899986531 12
Q ss_pred Ch--hhhc-ccceEEEcCCCCHH--HHHHHHHHhcccccc-ccCCC--CchHHHHHH-HhhcCCCChHHHHHHHHHHHHH
Q 002337 537 PP--TIRR-CFSHEISMGPLTEQ--QRVEMLSQLLQPVSE-LTSDT--GSEEFVKDI-IGQTSGFMPRDLHALVADAGAN 607 (934)
Q Consensus 537 d~--aLrr-rF~~eI~i~~Pde~--~R~~IL~~ll~~~~~-l~~d~--~~~~~L~~l-a~~t~Gfv~~DL~~L~~~A~~~ 607 (934)
-. .+.+ ++...|.+|+..++ ++..+++++++.... +..+. .....+..+ ....+| .-+.|+++++.+...
T Consensus 230 ~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pG-NirELkN~Ve~~~~~ 308 (403)
T COG1221 230 LAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPG-NIRELKNLVERAVAQ 308 (403)
T ss_pred HhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHH
Confidence 22 3333 67778888887774 455556666643321 11111 111222222 222233 336788888877655
Q ss_pred HH
Q 002337 608 LI 609 (934)
Q Consensus 608 ai 609 (934)
+.
T Consensus 309 ~~ 310 (403)
T COG1221 309 AS 310 (403)
T ss_pred hc
Confidence 53
No 389
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.08 E-value=8.5e-05 Score=78.88 Aligned_cols=154 Identities=17% Similarity=0.282 Sum_probs=99.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh-C--CcEE---------------EEe---cC---ccccccccc-hHHHHHHHHHHhh
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRL-G--IHVV---------------EYS---CH---NLMASSERK-TSAALAQAFNTAQ 453 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~el-g--~~~~---------------~I~---~~---~L~~~~~g~-~e~~L~~~f~~A~ 453 (934)
++++|||+|+||-|.+.++-+++ | ..-. +++ .. ++.-+..|. ....++.++.+..
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA 115 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA 115 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHH
Confidence 59999999999999999999987 2 1111 111 00 000011122 2233444444333
Q ss_pred cCC---------CEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccE
Q 002337 454 SYS---------PTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQV 524 (934)
Q Consensus 454 ~~~---------P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~V 524 (934)
+.+ --+++|.|.|.|.. +.+..|++-++. .....
T Consensus 116 Qt~qie~~~qr~fKvvvi~ead~LT~----------------dAQ~aLRRTMEk---------------------Ys~~~ 158 (351)
T KOG2035|consen 116 QTQQIETQGQRPFKVVVINEADELTR----------------DAQHALRRTMEK---------------------YSSNC 158 (351)
T ss_pred hhcchhhccccceEEEEEechHhhhH----------------HHHHHHHHHHHH---------------------HhcCc
Confidence 222 35889999998865 234445554432 14556
Q ss_pred EEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCCh
Q 002337 525 LLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMP 594 (934)
Q Consensus 525 iVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~ 594 (934)
-+|..+|+...+-+.+++|+- -+.+|.|+.++-..+++..+++..... ....+.+++..+.|-.-
T Consensus 159 RlIl~cns~SriIepIrSRCl-~iRvpaps~eeI~~vl~~v~~kE~l~l----p~~~l~rIa~kS~~nLR 223 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCL-FIRVPAPSDEEITSVLSKVLKKEGLQL----PKELLKRIAEKSNRNLR 223 (351)
T ss_pred eEEEEecCcccchhHHhhhee-EEeCCCCCHHHHHHHHHHHHHHhcccC----cHHHHHHHHHHhcccHH
Confidence 778888888888899999874 899999999999999998887654422 25567888888876443
No 390
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.08 E-value=5.2e-06 Score=89.17 Aligned_cols=100 Identities=18% Similarity=0.257 Sum_probs=66.1
Q ss_pred CcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccch---hhhhhHHHHHHHHhCCCcEEEeccccccccC
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGE---SEKNVRDIFQKARSARPCVIFFDELDSLAPA 758 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Ge---se~~v~~lf~~A~~~~p~vlfiDEid~l~~~ 758 (934)
.+++|+|+||||||+++.++|.++ +..++.++.++++..+.+. ......++++... ...+|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 589999999999999999999887 6778888888887644321 1222334555543 467999999987641
Q ss_pred CCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCC
Q 002337 759 RGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 799 (934)
Q Consensus 759 r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp 799 (934)
......++.+++..-- ...--+|.+||..
T Consensus 177 -------s~~~~~~l~~Ii~~Ry-----~~~~~tiitSNl~ 205 (244)
T PRK07952 177 -------SRYEKVIINQIVDRRS-----SSKRPTGMLTNSN 205 (244)
T ss_pred -------CHHHHHHHHHHHHHHH-----hCCCCEEEeCCCC
Confidence 1233456666665411 1122355588875
No 391
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.08 E-value=2.7e-06 Score=101.98 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=26.4
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHc
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC 708 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~ 708 (934)
+.+.++..+.|.||+|+|||||+++++...
T Consensus 305 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~ 334 (520)
T TIGR03269 305 LEVKEGEIFGIVGTSGAGKTTLSKIIAGVL 334 (520)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456778889999999999999999999764
No 392
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.07 E-value=2.9e-05 Score=94.88 Aligned_cols=141 Identities=17% Similarity=0.271 Sum_probs=81.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhC-----------------------------------CcEEEEecCccccccccchHH
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLG-----------------------------------IHVVEYSCHNLMASSERKTSA 443 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg-----------------------------------~~~~~I~~~~L~~~~~g~~e~ 443 (934)
+|||.|++|||||+++|++++.+. .+|+.+.+........|..
T Consensus 27 ~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~-- 104 (633)
T TIGR02442 27 GVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSL-- 104 (633)
T ss_pred eEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcc--
Confidence 599999999999999999999882 3444444432111001110
Q ss_pred HHHHHHHHhh---------cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchh
Q 002337 444 ALAQAFNTAQ---------SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVK 514 (934)
Q Consensus 444 ~L~~~f~~A~---------~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~ 514 (934)
.+...+.... ....+++||||++.+.+ .+...|.++++.... ..+ ..|.
T Consensus 105 d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~----------------~~q~~Ll~~le~g~~-~v~-r~g~---- 162 (633)
T TIGR02442 105 DIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD----------------HLVDVLLDAAAMGVN-RVE-REGL---- 162 (633)
T ss_pred cHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH----------------HHHHHHHHHHhcCCE-EEE-ECCc----
Confidence 0111111100 11246999999998765 333334344332100 000 0010
Q ss_pred hhhhhhcccEEEEEecCCCC-CCChhhhcccceEEEcCCCC-HHHHHHHHHHh
Q 002337 515 EIEKICRQQVLLVAAADSSE-GLPPTIRRCFSHEISMGPLT-EQQRVEMLSQL 565 (934)
Q Consensus 515 ~~~~~~~~~ViVIatTn~~~-~Ld~aLrrrF~~eI~i~~Pd-e~~R~~IL~~l 565 (934)
......++.+|+|+|..+ .+++++..||...+.++.+. .++|.++++..
T Consensus 163 --~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 163 --SVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred --eeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHH
Confidence 011235689999988543 48899999998888888765 47778887654
No 393
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.06 E-value=3.3e-06 Score=101.50 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=39.3
Q ss_pred ccceEEEcCCCCHHHHHHHHHHhccccccccCCC-------CchHHHHHHHhhcCC---CChHHHHHHHH
Q 002337 543 CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDT-------GSEEFVKDIIGQTSG---FMPRDLHALVA 602 (934)
Q Consensus 543 rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~-------~~~~~L~~la~~t~G---fv~~DL~~L~~ 602 (934)
+....++.| +.+|..|++.++.++..+..|. ....++.++.....+ ++.||+..+..
T Consensus 151 ~~~~~LSgG---q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~ 217 (530)
T PRK15064 151 GLMSEVAPG---WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNS 217 (530)
T ss_pred CchhhcCHH---HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 334588899 9999999999998877664443 334556666554322 77888887654
No 394
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.06 E-value=2.5e-05 Score=79.30 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=46.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccc-----cch-------HHHHHHHHHHhhcCCCEEEEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSE-----RKT-------SAALAQAFNTAQSYSPTILLL 462 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~-----g~~-------e~~L~~~f~~A~~~~P~IL~I 462 (934)
.+|||+|++||||+++|++|-+.. +.+|+.|+|..+..... |.. ...-...++.|. .+.|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~---~GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQAN---GGTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTT---TSEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeecc---ceEEee
Confidence 459999999999999999998865 46899999986532210 100 000113455553 589999
Q ss_pred cchhhccc
Q 002337 463 RDFDVFRN 470 (934)
Q Consensus 463 DEID~L~~ 470 (934)
|||+.|.+
T Consensus 100 d~I~~L~~ 107 (168)
T PF00158_consen 100 DEIEDLPP 107 (168)
T ss_dssp ETGGGS-H
T ss_pred cchhhhHH
Confidence 99998876
No 395
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=5e-05 Score=85.07 Aligned_cols=131 Identities=17% Similarity=0.234 Sum_probs=81.1
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccccc--ccch--hhhhhHHHHHHHH----hCCCcEEEecccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM--YIGE--SEKNVRDIFQKAR----SARPCVIFFDELDSL 755 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~--~~Ge--se~~v~~lf~~A~----~~~p~vlfiDEid~l 755 (934)
+..+||+||+|+|||++|+++|..+......-.-+++..- +-|. +-..+|++.+.+. .....|++||++|.+
T Consensus 26 ~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m 105 (313)
T PRK05564 26 SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM 105 (313)
T ss_pred CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhc
Confidence 4567999999999999999999875221110011122110 1111 1134666665442 234469999999887
Q ss_pred ccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHH
Q 002337 756 APARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKAL 834 (934)
Q Consensus 756 ~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~ 834 (934)
. ....+.||..++... .++++|.+|+.++.+-|.+++ |. ..+++.. ++.++-..+++..
T Consensus 106 ~-------------~~a~naLLK~LEepp---~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~-~~~~~~~~~l~~~ 164 (313)
T PRK05564 106 T-------------EQAQNAFLKTIEEPP---KGVFIILLCENLEQILDTIKS--RC-QIYKLNR-LSKEEIEKFISYK 164 (313)
T ss_pred C-------------HHHHHHHHHHhcCCC---CCeEEEEEeCChHhCcHHHHh--hc-eeeeCCC-cCHHHHHHHHHHH
Confidence 4 234567777777542 344555555778999999988 77 4788874 6666666666543
No 396
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=1.1e-06 Score=104.81 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=26.5
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHc
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC 708 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~ 708 (934)
..+.++..+.|.||+|+|||||.++++...
T Consensus 283 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 312 (506)
T PRK13549 283 FSLRRGEILGIAGLVGAGRTELVQCLFGAY 312 (506)
T ss_pred eEEcCCcEEEEeCCCCCCHHHHHHHHhCCC
Confidence 466778889999999999999999999764
No 397
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.05 E-value=9.9e-05 Score=78.87 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=48.0
Q ss_pred CCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh
Q 002337 533 SEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKS 612 (934)
Q Consensus 533 ~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r~ 612 (934)
|.+||-.+..|.. .|...+.++++-.+||++.++..+... + ...+..+......-+-+--..|+..|.+.|.+|.
T Consensus 339 phGiP~D~lDR~l-II~t~py~~~d~~~IL~iRc~EEdv~m-~---~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk 413 (454)
T KOG2680|consen 339 PHGIPIDLLDRML-IISTQPYTEEDIKKILRIRCQEEDVEM-N---PDALDLLTKIGEATSLRYAIHLITAASLVCLKRK 413 (454)
T ss_pred CCCCcHHHhhhhh-eeecccCcHHHHHHHHHhhhhhhcccc-C---HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 5678888888875 788888999999999999886554321 1 1223333333222333444556777777777663
No 398
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.05 E-value=3.3e-05 Score=86.56 Aligned_cols=66 Identities=24% Similarity=0.188 Sum_probs=48.2
Q ss_pred HHHHHhhhhhccCCcC--------CCCCEEEEEEcCCCC-------CCChhhhCCCCcceeeeecCCCCHHHHHHHHHHH
Q 002337 770 DRVVSQMLAEIDGLND--------SSQDLFIIGASNRPD-------LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKAL 834 (934)
Q Consensus 770 ~~v~~~lL~~ldg~~~--------~~~~v~vI~aTNrp~-------~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~ 834 (934)
..+++.||+.++...- -.-+.+||++||..+ ...+|+++ |+. .|+++.|.+...-.+|.+..
T Consensus 250 ~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~ 326 (361)
T smart00763 250 IKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKL 326 (361)
T ss_pred HHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHH
Confidence 3567778777663211 123468899999873 55789999 998 88999888888888888877
Q ss_pred HhcC
Q 002337 835 TRKF 838 (934)
Q Consensus 835 ~~~~ 838 (934)
+...
T Consensus 327 ~~~s 330 (361)
T smart00763 327 LRNS 330 (361)
T ss_pred hccC
Confidence 7653
No 399
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.03 E-value=2.2e-06 Score=102.05 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=29.7
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEe
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~ 429 (934)
+.+..+.-+.|.||+|+|||||++++++.+...-+.|.
T Consensus 19 ~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~ 56 (491)
T PRK10982 19 LKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSIL 56 (491)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEE
Confidence 33445555999999999999999999998766555543
No 400
>PRK12377 putative replication protein; Provisional
Probab=98.03 E-value=8e-06 Score=87.94 Aligned_cols=101 Identities=17% Similarity=0.216 Sum_probs=63.0
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccchh--hhhhHHHHHHHHhCCCcEEEeccccccccC
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGES--EKNVRDIFQKARSARPCVIFFDELDSLAPA 758 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Ges--e~~v~~lf~~A~~~~p~vlfiDEid~l~~~ 758 (934)
..+++|+||||||||+||.|+|+.+ +..++.++.++++......- .....++++.. ....+|+|||+......
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s 178 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET 178 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC
Confidence 3689999999999999999999876 56778888777766432110 01122344443 34579999999765321
Q ss_pred CCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCC
Q 002337 759 RGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 799 (934)
Q Consensus 759 r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp 799 (934)
.....++.+++..-- . ...-+|.|||..
T Consensus 179 --------~~~~~~l~~ii~~R~---~--~~~ptiitSNl~ 206 (248)
T PRK12377 179 --------KNEQVVLNQIIDRRT---A--SMRSVGMLTNLN 206 (248)
T ss_pred --------HHHHHHHHHHHHHHH---h--cCCCEEEEcCCC
Confidence 123455666655421 1 112245589975
No 401
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.03 E-value=0.0001 Score=78.56 Aligned_cols=41 Identities=27% Similarity=0.384 Sum_probs=32.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC--cEEEEecCccccc
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGI--HVVEYSCHNLMAS 436 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~--~~~~I~~~~L~~~ 436 (934)
.++.+||.||||||||.||-+++.++|. +|....++++++.
T Consensus 63 aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~ 105 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSN 105 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhh
Confidence 4678999999999999999999999974 5665556655443
No 402
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.03 E-value=9.8e-06 Score=99.16 Aligned_cols=37 Identities=22% Similarity=0.141 Sum_probs=29.3
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
+.+..+.-+.|.||+|+|||||++++++.+...-+.|
T Consensus 37 ~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i 73 (623)
T PRK10261 37 FSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV 73 (623)
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEE
Confidence 3444555699999999999999999999986554544
No 403
>PRK08116 hypothetical protein; Validated
Probab=98.03 E-value=2e-05 Score=86.16 Aligned_cols=69 Identities=22% Similarity=0.359 Sum_probs=46.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCcccccccc----chHHHHHHHHHHhhcCCCEEEEEcchhh
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSER----KTSAALAQAFNTAQSYSPTILLLRDFDV 467 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g----~~e~~L~~~f~~A~~~~P~IL~IDEID~ 467 (934)
+.+++|+|++|||||+|+.++|+++ +..++.++..+++..... ........+++... ...+|+|||+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~ 189 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGA 189 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccC
Confidence 3579999999999999999999987 677888887776543211 11111223333332 345899999863
No 404
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.01 E-value=3.7e-05 Score=90.87 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRL 421 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~el 421 (934)
.+.+++|+|||||||||+++.+++.+
T Consensus 210 ~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 210 GGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCCEEEEEecCCCCHHHHHHHHhccc
Confidence 34569999999999999999999865
No 405
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.00 E-value=1e-05 Score=90.01 Aligned_cols=101 Identities=25% Similarity=0.343 Sum_probs=64.4
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccchh-hhhhHHHHHHHHhCCCcEEEeccccccccCC
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGES-EKNVRDIFQKARSARPCVIFFDELDSLAPAR 759 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Ges-e~~v~~lf~~A~~~~p~vlfiDEid~l~~~r 759 (934)
..|++|+||+|||||+|+.|+|+++ +..+..+..++++..+.... ...+.+.++..+ ...+|+|||+..-..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~~-- 231 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQM-- 231 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCccc--
Confidence 5799999999999999999999887 67778788777765543211 112344455443 456999999965421
Q ss_pred CCCCCCchhHHHHHHhhhhh-ccCCcCCCCCEEEEEEcCCC
Q 002337 760 GASGDSGGVMDRVVSQMLAE-IDGLNDSSQDLFIIGASNRP 799 (934)
Q Consensus 760 ~~~~~~~~~~~~v~~~lL~~-ldg~~~~~~~v~vI~aTNrp 799 (934)
+....+.++..++.. |. .+.-.|.|||.+
T Consensus 232 -----s~~~~~~ll~~Il~~R~~------~~~~ti~TSNl~ 261 (306)
T PRK08939 232 -----SSWVRDEVLGVILQYRMQ------EELPTFFTSNFD 261 (306)
T ss_pred -----cHHHHHHHHHHHHHHHHH------CCCeEEEECCCC
Confidence 111223455555542 22 123466699975
No 406
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.99 E-value=3.3e-06 Score=101.01 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=29.0
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
+.+..+.-+.|.||+|+|||||++++++.+...-+.|
T Consensus 26 ~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i 62 (510)
T PRK09700 26 LTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE
Confidence 3344555599999999999999999999886554444
No 407
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.99 E-value=1e-05 Score=97.86 Aligned_cols=55 Identities=24% Similarity=0.289 Sum_probs=40.2
Q ss_pred ceEEEcCCCCHHHHHHHHHHhccccccccCCC-------CchHHHHHHHhhcCC---CChHHHHHHHH
Q 002337 545 SHEISMGPLTEQQRVEMLSQLLQPVSELTSDT-------GSEEFVKDIIGQTSG---FMPRDLHALVA 602 (934)
Q Consensus 545 ~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~-------~~~~~L~~la~~t~G---fv~~DL~~L~~ 602 (934)
...++.| +.+|..|.+.++.+++.+..|. ....++.++.+...+ ++.||+..+..
T Consensus 161 ~~~LSgG---qkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~ 225 (556)
T PRK11819 161 VTKLSGG---ERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDN 225 (556)
T ss_pred hhhcCHH---HHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 3578888 9999999999998887664443 335566666666555 77888877764
No 408
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=4.1e-05 Score=83.15 Aligned_cols=82 Identities=26% Similarity=0.457 Sum_probs=59.0
Q ss_pred cEEEeccccccccCCCCCCCCchhHH-HHHHhhhhhccCCcC-------CCCCEEEEEEc----CCCCCCChhhhCCCCc
Q 002337 745 CVIFFDELDSLAPARGASGDSGGVMD-RVVSQMLAEIDGLND-------SSQDLFIIGAS----NRPDLIDPALLRPGRF 812 (934)
Q Consensus 745 ~vlfiDEid~l~~~r~~~~~~~~~~~-~v~~~lL~~ldg~~~-------~~~~v~vI~aT----Nrp~~lD~allrpGRf 812 (934)
.||||||||.++.+.+.++ . ++++ .|...||-.++|-.- ....+++||+- ..|.+|=|.|. |||
T Consensus 252 GIvFIDEIDKIa~~~~~g~-~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGG-P-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRF 327 (444)
T ss_pred CeEEEehhhHHHhcCCCCC-C-CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCC
Confidence 5999999999997765322 1 3333 477788888777532 23468888864 56788888886 599
Q ss_pred ceeeeecCCCCHHHHHHHH
Q 002337 813 DKLLYVGVNSDVSYRERVL 831 (934)
Q Consensus 813 d~~i~v~~Pp~~~~r~~Il 831 (934)
.-.+++.- .+.+.-.+||
T Consensus 328 PIRVEL~~-Lt~~Df~rIL 345 (444)
T COG1220 328 PIRVELDA-LTKEDFERIL 345 (444)
T ss_pred ceEEEccc-CCHHHHHHHH
Confidence 99999884 7777777776
No 409
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.99 E-value=2.2e-05 Score=82.54 Aligned_cols=168 Identities=18% Similarity=0.229 Sum_probs=95.4
Q ss_pred hhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEE--EecCccccccccchHHHHHHHHHHhhcCCCEEE
Q 002337 383 LAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE--YSCHNLMASSERKTSAALAQAFNTAQSYSPTIL 460 (934)
Q Consensus 383 l~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~--I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL 460 (934)
++..+.++.| +.|.||+||||||++|.|-+...+..+. +++.++.....-+....+..+++..- .-|..-
T Consensus 20 v~l~I~~gef-------~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqig-LFPh~T 91 (309)
T COG1125 20 VNLTIEEGEF-------LVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIG-LFPHLT 91 (309)
T ss_pred eeEEecCCeE-------EEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcc-cCCCcc
Confidence 4445556666 8999999999999999999988765544 45544433212222222222222221 235555
Q ss_pred EEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCCh-h
Q 002337 461 LLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPP-T 539 (934)
Q Consensus 461 ~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~-a 539 (934)
+.++|-.+-. . ......++.+..++++. .-+|+| .
T Consensus 92 v~eNIa~VP~-L--------~~w~k~~i~~r~~ELl~-----------------------------------lvgL~p~~ 127 (309)
T COG1125 92 VAENIATVPK-L--------LGWDKERIKKRADELLD-----------------------------------LVGLDPSE 127 (309)
T ss_pred HHHHHHhhhh-h--------cCCCHHHHHHHHHHHHH-----------------------------------HhCCCHHH
Confidence 5555532221 0 00112233333333322 114676 4
Q ss_pred hhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCC-------chH----HHHHHHhh---cCCCChHHHHHHHHHHH
Q 002337 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTG-------SEE----FVKDIIGQ---TSGFMPRDLHALVADAG 605 (934)
Q Consensus 540 LrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~-------~~~----~L~~la~~---t~Gfv~~DL~~L~~~A~ 605 (934)
+..|++++++.| ++||.-+++.+...++.+.-|.. ... .+.++-+. |-=|+.||+....+-|-
T Consensus 128 ~~~RyP~eLSGG---QQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLad 204 (309)
T COG1125 128 YADRYPHELSGG---QQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLAD 204 (309)
T ss_pred HhhcCchhcCcc---hhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhc
Confidence 888999999999 99999999999988776633321 111 12222222 22388999876666543
No 410
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=3.5e-05 Score=86.85 Aligned_cols=129 Identities=17% Similarity=0.142 Sum_probs=80.1
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcE----------------EEecCccccccc-cchh--hhhhHHHHHHHH----
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNF----------------LSVKGPELINMY-IGES--EKNVRDIFQKAR---- 740 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~----------------i~v~~~~l~~~~-~Ges--e~~v~~lf~~A~---- 740 (934)
+..+||+||+|+||+++|+++|+.+...- ..-+-+|+.--. .|.+ -..+|++.+.+.
T Consensus 28 ~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~ 107 (329)
T PRK08058 28 SHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGV 107 (329)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCc
Confidence 45679999999999999999988752110 000011111000 1111 134566655443
Q ss_pred hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecC
Q 002337 741 SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGV 820 (934)
Q Consensus 741 ~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~ 820 (934)
.....|++|||+|.+. ....+.||..|+... .++++|.+|+.+..|-|.+++ |. ..+++..
T Consensus 108 ~~~~kvviI~~a~~~~-------------~~a~NaLLK~LEEPp---~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~ 168 (329)
T PRK08058 108 ESNKKVYIIEHADKMT-------------ASAANSLLKFLEEPS---GGTTAILLTENKHQILPTILS--RC-QVVEFRP 168 (329)
T ss_pred ccCceEEEeehHhhhC-------------HHHHHHHHHHhcCCC---CCceEEEEeCChHhCcHHHHh--hc-eeeeCCC
Confidence 2334699999998884 345677888887642 455666677788899999998 76 4567764
Q ss_pred CCCHHHHHHHHH
Q 002337 821 NSDVSYRERVLK 832 (934)
Q Consensus 821 Pp~~~~r~~Il~ 832 (934)
++.++-.++++
T Consensus 169 -~~~~~~~~~L~ 179 (329)
T PRK08058 169 -LPPESLIQRLQ 179 (329)
T ss_pred -CCHHHHHHHHH
Confidence 55555555554
No 411
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=5.9e-05 Score=85.93 Aligned_cols=131 Identities=18% Similarity=0.196 Sum_probs=82.5
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcE-------------EEe-------------cCcccccccc---chh------
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNF-------------LSV-------------KGPELINMYI---GES------ 728 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~-------------i~v-------------~~~~l~~~~~---Ges------ 728 (934)
+..+||+||+|+||+++|.++|+.+-..- +.+ +-+++.--.. +..
T Consensus 41 ~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~ 120 (365)
T PRK07471 41 HHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTV 120 (365)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccccccccccccc
Confidence 55799999999999999999998762110 000 0012211110 110
Q ss_pred --hhhhHHHHHHHH----hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCC
Q 002337 729 --EKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLI 802 (934)
Q Consensus 729 --e~~v~~lf~~A~----~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~l 802 (934)
-..+|++-+.+. ...|.|++|||+|.+. ....+.||..++.. ..++++|.+|+.++.+
T Consensus 121 I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------------~~aanaLLK~LEep---p~~~~~IL~t~~~~~l 184 (365)
T PRK07471 121 ITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------------ANAANALLKVLEEP---PARSLFLLVSHAPARL 184 (365)
T ss_pred ccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------------HHHHHHHHHHHhcC---CCCeEEEEEECCchhc
Confidence 123555554432 3567899999999884 23556777777653 2345666688889989
Q ss_pred ChhhhCCCCcceeeeecCCCCHHHHHHHHHHH
Q 002337 803 DPALLRPGRFDKLLYVGVNSDVSYRERVLKAL 834 (934)
Q Consensus 803 D~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~ 834 (934)
.|.+++ |. ..+.++ |++.++-.+++...
T Consensus 185 lpti~S--Rc-~~i~l~-~l~~~~i~~~L~~~ 212 (365)
T PRK07471 185 LPTIRS--RC-RKLRLR-PLAPEDVIDALAAA 212 (365)
T ss_pred hHHhhc--cc-eEEECC-CCCHHHHHHHHHHh
Confidence 898887 76 467777 46666666666553
No 412
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.98 E-value=3.2e-06 Score=100.86 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=26.6
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHc
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC 708 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~ 708 (934)
..+.++..+.|.||+|+|||||.++++...
T Consensus 274 l~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~ 303 (501)
T PRK11288 274 FSVRAGEIVGLFGLVGAGRSELMKLLYGAT 303 (501)
T ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHcCCC
Confidence 466778889999999999999999999765
No 413
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.98 E-value=4.7e-05 Score=90.93 Aligned_cols=71 Identities=24% Similarity=0.294 Sum_probs=48.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccc-----cchH----HH---HHHHHHHhhcCCCEEEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSE-----RKTS----AA---LAQAFNTAQSYSPTILL 461 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~-----g~~e----~~---L~~~f~~A~~~~P~IL~ 461 (934)
+.+|||+|++||||+++|+++.... +.+++.|||..+..... |... +. -...|+.| .++.||
T Consensus 210 ~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ 286 (509)
T PRK05022 210 DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELA---DGGTLF 286 (509)
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhc---CCCEEE
Confidence 4569999999999999999998875 46899999987542110 0000 00 01123333 357899
Q ss_pred Ecchhhccc
Q 002337 462 LRDFDVFRN 470 (934)
Q Consensus 462 IDEID~L~~ 470 (934)
||||+.|..
T Consensus 287 ldeI~~L~~ 295 (509)
T PRK05022 287 LDEIGELPL 295 (509)
T ss_pred ecChhhCCH
Confidence 999998865
No 414
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.97 E-value=4.9e-05 Score=78.62 Aligned_cols=138 Identities=22% Similarity=0.291 Sum_probs=81.3
Q ss_pred HHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHh-CC----cEEEEecCccccccccchHHHHH--
Q 002337 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL-GI----HVVEYSCHNLMASSERKTSAALA-- 446 (934)
Q Consensus 374 ~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~el-g~----~~~~I~~~~L~~~~~g~~e~~L~-- 446 (934)
+++..|..+...--- .++++.|||||||||-+.++|+++ |. -+.++|.++-. ....+|
T Consensus 34 ~tv~rl~via~~gnm---------P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR------GIDvVRn~ 98 (333)
T KOG0991|consen 34 DTVERLSVIAKEGNM---------PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER------GIDVVRNK 98 (333)
T ss_pred HHHHHHHHHHHcCCC---------CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc------ccHHHHHH
Confidence 456666555432222 359999999999999999999997 42 34566666421 222222
Q ss_pred -HHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhc
Q 002337 447 -QAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (934)
Q Consensus 447 -~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~ 521 (934)
..|.+-+- ..--|+++||.|++.. -..+.|++.++- ..
T Consensus 99 IK~FAQ~kv~lp~grhKIiILDEADSMT~----------------gAQQAlRRtMEi---------------------yS 141 (333)
T KOG0991|consen 99 IKMFAQKKVTLPPGRHKIIILDEADSMTA----------------GAQQALRRTMEI---------------------YS 141 (333)
T ss_pred HHHHHHhhccCCCCceeEEEeeccchhhh----------------HHHHHHHHHHHH---------------------Hc
Confidence 23433331 2235999999997754 123445554432 13
Q ss_pred ccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHH
Q 002337 522 QQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQ 564 (934)
Q Consensus 522 ~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ 564 (934)
...-+..+||..+.|=+.+.+|+. .+.+...+..+-+.-+..
T Consensus 142 ~ttRFalaCN~s~KIiEPIQSRCA-iLRysklsd~qiL~Rl~~ 183 (333)
T KOG0991|consen 142 NTTRFALACNQSEKIIEPIQSRCA-ILRYSKLSDQQILKRLLE 183 (333)
T ss_pred ccchhhhhhcchhhhhhhHHhhhH-hhhhcccCHHHHHHHHHH
Confidence 344567788888887777777653 444555555554443333
No 415
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=97.97 E-value=5.4e-06 Score=69.38 Aligned_cols=36 Identities=33% Similarity=0.602 Sum_probs=32.8
Q ss_pred cccccHHHHHHHHHhhCCCcCHHHHHHHHHHHHHhc
Q 002337 895 SVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFE 930 (934)
Q Consensus 895 ~~~it~~df~~al~~~~psvs~~~l~~y~~~~~~~~ 930 (934)
.++|+++||++||+.++||||+++|++|++|.++|+
T Consensus 27 ~p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 27 EPPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 347999999999999999999999999999999985
No 416
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.97 E-value=2.6e-05 Score=93.75 Aligned_cols=140 Identities=19% Similarity=0.237 Sum_probs=79.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHH----H-----------HHHHHhhcCCCE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAAL----A-----------QAFNTAQSYSPT 458 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~~e~~L----~-----------~~f~~A~~~~P~ 458 (934)
..+|||+|++||||+++|++|.... +.+|+.|+|..+.... .+..+ + ..++. ..++
T Consensus 219 ~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~---~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~G 292 (534)
T TIGR01817 219 NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETL---LESELFGHEKGAFTGAIAQRKGRFEL---ADGG 292 (534)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHH---HHHHHcCCCCCccCCCCcCCCCcccc---cCCC
Confidence 3469999999999999999999875 4689999998653211 00000 0 01222 2468
Q ss_pred EEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC----
Q 002337 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE---- 534 (934)
Q Consensus 459 IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~---- 534 (934)
.||||||+.|.. .+...|.++++... ....++ .......+.+|++|+...
T Consensus 293 tL~ldei~~L~~----------------~~Q~~Ll~~l~~~~---~~~~~~-------~~~~~~~~riI~~s~~~l~~~~ 346 (534)
T TIGR01817 293 TLFLDEIGEISP----------------AFQAKLLRVLQEGE---FERVGG-------NRTLKVDVRLVAATNRDLEEAV 346 (534)
T ss_pred eEEEechhhCCH----------------HHHHHHHHHHhcCc---EEECCC-------CceEeecEEEEEeCCCCHHHHH
Confidence 999999998865 22222323332100 000000 011133577888886542
Q ss_pred ---CCChhhhcccc-eEEEcCCCCH--HHHHHHHHHhccc
Q 002337 535 ---GLPPTIRRCFS-HEISMGPLTE--QQRVEMLSQLLQP 568 (934)
Q Consensus 535 ---~Ld~aLrrrF~-~eI~i~~Pde--~~R~~IL~~ll~~ 568 (934)
.+.+.+..|+. ..|.+|+..+ ++...|+++++..
T Consensus 347 ~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~ 386 (534)
T TIGR01817 347 AKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEK 386 (534)
T ss_pred HcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHH
Confidence 24455555553 3677776653 3445566666543
No 417
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.97 E-value=5.3e-06 Score=85.08 Aligned_cols=72 Identities=29% Similarity=0.558 Sum_probs=48.8
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccch-hhhhhHHHHHHHHhCCCcEEEecccccc
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGE-SEKNVRDIFQKARSARPCVIFFDELDSL 755 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Ge-se~~v~~lf~~A~~~~p~vlfiDEid~l 755 (934)
..+.+++|+||||||||++|.+++.++ +..+..++.++|+...-.. ......+.++... .+.+|+|||+...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 346799999999999999999998765 7788889888887654321 1122344555544 3469999998543
No 418
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.96 E-value=1.5e-05 Score=76.75 Aligned_cols=99 Identities=20% Similarity=0.348 Sum_probs=59.1
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc--------CCcEEEecCcccccc--------------ccc-hhhh-hhHHHHHH
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC--------SLNFLSVKGPELINM--------------YIG-ESEK-NVRDIFQK 738 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~--------~~~~i~v~~~~l~~~--------------~~G-ese~-~v~~lf~~ 738 (934)
....++++||+|+|||++++.++... ..+++.++++.-.+. ..+ .+.. ....+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35678999999999999999999887 677888876443210 011 1222 23444444
Q ss_pred HHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEc
Q 002337 739 ARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGAS 796 (934)
Q Consensus 739 A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aT 796 (934)
.+.....+|+|||+|.+. + ...++.|...++ ...-.++++|+.
T Consensus 83 l~~~~~~~lviDe~~~l~-~-----------~~~l~~l~~l~~---~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLF-S-----------DEFLEFLRSLLN---ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHH-T-----------HHHHHHHHHHTC---SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcC-C-----------HHHHHHHHHHHh---CCCCeEEEEECh
Confidence 455554699999999975 1 345566655555 223346666554
No 419
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.95 E-value=1.3e-05 Score=89.80 Aligned_cols=71 Identities=24% Similarity=0.439 Sum_probs=50.2
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccch---hhhhhHHHHHHHHhCCCcEEEeccccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGE---SEKNVRDIFQKARSARPCVIFFDELDSLA 756 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Ge---se~~v~~lf~~A~~~~p~vlfiDEid~l~ 756 (934)
..+++|+||+|||||+|+.|+|.++ +..+++++.++++..+... ........++... ...+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~ 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC
Confidence 3789999999999999999999886 7788889888886654221 0111122234333 34699999997663
No 420
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.95 E-value=3.7e-06 Score=100.28 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=26.5
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHc
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC 708 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~ 708 (934)
..+.++..+.|.||+|+|||||.++++...
T Consensus 281 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 310 (500)
T TIGR02633 281 FSLRRGEILGVAGLVGAGRTELVQALFGAY 310 (500)
T ss_pred eEEeCCcEEEEeCCCCCCHHHHHHHHhCCC
Confidence 456778889999999999999999999765
No 421
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.94 E-value=3.6e-05 Score=90.06 Aligned_cols=186 Identities=23% Similarity=0.300 Sum_probs=116.0
Q ss_pred hcCCHHHHHHHHHhhhcccccccCCCCCccchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHcCCcE-------E-
Q 002337 642 QVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNF-------L- 713 (934)
Q Consensus 642 ~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~-------i- 713 (934)
..++++.+...|...-... +-..+.||.||.|||||++||.+|..++..- .
T Consensus 17 evvGQe~v~~~L~nal~~~---------------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~ 75 (515)
T COG2812 17 DVVGQEHVVKTLSNALENG---------------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGK 75 (515)
T ss_pred HhcccHHHHHHHHHHHHhC---------------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchh
Confidence 3478888888887653221 1245789999999999999999998775421 0
Q ss_pred -----EecC---ccccccccchh---hhhhHHHHHHHH----hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhh
Q 002337 714 -----SVKG---PELINMYIGES---EKNVRDIFQKAR----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLA 778 (934)
Q Consensus 714 -----~v~~---~~l~~~~~Ges---e~~v~~lf~~A~----~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~ 778 (934)
.++- .|++. +-+.| -..+|++.+++. ..++.|.+|||++.|. ....|.||.
T Consensus 76 C~~Ck~I~~g~~~DviE-iDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-------------~~afNALLK 141 (515)
T COG2812 76 CISCKEINEGSLIDVIE-IDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-------------KQAFNALLK 141 (515)
T ss_pred hhhhHhhhcCCcccchh-hhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-------------HHHHHHHhc
Confidence 0110 11111 12222 244677777764 2445799999999985 346788888
Q ss_pred hccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCCcCCC-HHHHHhhCCCCC
Q 002337 779 EIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVS-LYSIAKKCPPNF 857 (934)
Q Consensus 779 ~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~-l~~la~~~t~g~ 857 (934)
.++.- ...|.+|.||.-|+.+++-+++ |..+ +.|.. -+.+.-..-|...+.+-.+..+.+ +.-+|+. ..-
T Consensus 142 TLEEP---P~hV~FIlATTe~~Kip~TIlS--Rcq~-f~fkr-i~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~--a~G 212 (515)
T COG2812 142 TLEEP---PSHVKFILATTEPQKIPNTILS--RCQR-FDFKR-LDLEEIAKHLAAILDKEGINIEEDALSLIARA--AEG 212 (515)
T ss_pred ccccC---ccCeEEEEecCCcCcCchhhhh--cccc-ccccC-CCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH--cCC
Confidence 87754 4567777788889999998887 7643 33432 344555555666666555544433 4455555 233
Q ss_pred CHHHHHHHHHHHHH
Q 002337 858 TGADMYALCADAWF 871 (934)
Q Consensus 858 sgaDl~~l~~~A~~ 871 (934)
+-+|...+...|..
T Consensus 213 s~RDalslLDq~i~ 226 (515)
T COG2812 213 SLRDALSLLDQAIA 226 (515)
T ss_pred ChhhHHHHHHHHHH
Confidence 44676666655443
No 422
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.94 E-value=7.5e-05 Score=92.50 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=49.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCcccccc-----cc--------chHHHHHHHHHHhhcCCCEE
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASS-----ER--------KTSAALAQAFNTAQSYSPTI 459 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~-----~g--------~~e~~L~~~f~~A~~~~P~I 459 (934)
...+|||+|++|||||++|+++.... +.+++.++|..+.... .| .... ....++.| .++.
T Consensus 398 ~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~-~~g~le~a---~~Gt 473 (686)
T PRK15429 398 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ-RIGRFELA---DKSS 473 (686)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccc-hhhHHHhc---CCCe
Confidence 34579999999999999999998765 5689999998653211 01 0111 11234433 3589
Q ss_pred EEEcchhhccc
Q 002337 460 LLLRDFDVFRN 470 (934)
Q Consensus 460 L~IDEID~L~~ 470 (934)
+|||||+.+..
T Consensus 474 L~Ldei~~L~~ 484 (686)
T PRK15429 474 LFLDEVGDMPL 484 (686)
T ss_pred EEEechhhCCH
Confidence 99999998765
No 423
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=0.00027 Score=79.09 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=83.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcE----------EEEecCcccccc-----cc--------------------c
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHV----------VEYSCHNLMASS-----ER--------------------K 440 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~----------~~I~~~~L~~~~-----~g--------------------~ 440 (934)
.+..+|++||+|+||+++|+++|+.+-..- ...+.+|+.--. .| -
T Consensus 25 l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I 104 (314)
T PRK07399 25 IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQI 104 (314)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccC
Confidence 345689999999999999999999873210 111122222000 01 0
Q ss_pred hHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhh
Q 002337 441 TSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEI 516 (934)
Q Consensus 441 ~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~ 516 (934)
....++++.+.+.. ....|++||++|.+.. .....+| ..++.
T Consensus 105 ~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~---------------~aaNaLL-K~LEE------------------ 150 (314)
T PRK07399 105 RLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE---------------AAANALL-KTLEE------------------ 150 (314)
T ss_pred cHHHHHHHHHHHccCcccCCceEEEEEchhhcCH---------------HHHHHHH-HHHhC------------------
Confidence 12244555444432 2347999999997754 1122233 33321
Q ss_pred hhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhc
Q 002337 517 EKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLL 566 (934)
Q Consensus 517 ~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll 566 (934)
.. +.++|..|++++.|.|.+++|+. .+.+++|+.++..++|+...
T Consensus 151 ---Pp-~~~fILi~~~~~~Ll~TI~SRcq-~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 151 ---PG-NGTLILIAPSPESLLPTIVSRCQ-IIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred ---CC-CCeEEEEECChHhCcHHHHhhce-EEecCCCCHHHHHHHHHHhh
Confidence 13 45677778899999999999984 99999999999999888653
No 424
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.93 E-value=2.8e-05 Score=80.40 Aligned_cols=104 Identities=24% Similarity=0.384 Sum_probs=61.8
Q ss_pred CcceecCCCCCcchHHHHHHHHHc-C----CcEEEecCccccccccchhhhhhHHHHHHHHhC-CC---cEEEecccccc
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC-S----LNFLSVKGPELINMYIGESEKNVRDIFQKARSA-RP---CVIFFDELDSL 755 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~-~----~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~-~p---~vlfiDEid~l 755 (934)
.++++.||||||||+.+.++|+++ | -.++.+++++=-+- ..-++--..|.+-+-. .| .||++||+|++
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchh
Confidence 489999999999999999999986 2 23566666543211 1112223344443332 22 59999999999
Q ss_pred ccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhh
Q 002337 756 APARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALL 807 (934)
Q Consensus 756 ~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~all 807 (934)
.. | .+.+++|.+.-. ++...+..|+|..+.|=+-+.
T Consensus 126 T~-----g-AQQAlRRtMEiy----------S~ttRFalaCN~s~KIiEPIQ 161 (333)
T KOG0991|consen 126 TA-----G-AQQALRRTMEIY----------SNTTRFALACNQSEKIIEPIQ 161 (333)
T ss_pred hh-----H-HHHHHHHHHHHH----------cccchhhhhhcchhhhhhhHH
Confidence 62 1 223455554332 122345557787776544333
No 425
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.92 E-value=5.3e-06 Score=85.99 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=20.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL 421 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el 421 (934)
.++||+||||||||++|+.+...+
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCeEEECCCCCCHHHHHHHHHHhC
Confidence 469999999999999999999887
No 426
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.92 E-value=0.00029 Score=83.35 Aligned_cols=199 Identities=18% Similarity=0.280 Sum_probs=119.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC----------CcEEEEecCccccc----------cccc------hHHHHHHHHH
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLG----------IHVVEYSCHNLMAS----------SERK------TSAALAQAFN 450 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg----------~~~~~I~~~~L~~~----------~~g~------~e~~L~~~f~ 450 (934)
+..+.+.|-||||||.+++.+-++|. ..+++||+-.+.+. ..|+ ....++.-|.
T Consensus 422 g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~ 501 (767)
T KOG1514|consen 422 GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFT 501 (767)
T ss_pred ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc
Confidence 34689999999999999999998762 46788888765542 1111 1233444444
Q ss_pred Hhh-cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEe
Q 002337 451 TAQ-SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAA 529 (934)
Q Consensus 451 ~A~-~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIat 529 (934)
... ...++|++|||+|.|.... +++|..+.+- . ...+.+++||+.
T Consensus 502 ~~k~~~~~~VvLiDElD~Lvtr~----------------QdVlYn~fdW------------p------t~~~sKLvvi~I 547 (767)
T KOG1514|consen 502 VPKPKRSTTVVLIDELDILVTRS----------------QDVLYNIFDW------------P------TLKNSKLVVIAI 547 (767)
T ss_pred cCCCCCCCEEEEeccHHHHhccc----------------HHHHHHHhcC------------C------cCCCCceEEEEe
Confidence 222 3468999999999998621 2333333321 0 112567788888
Q ss_pred cCCCCCCChhhhc-----cc-ceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHH---H
Q 002337 530 ADSSEGLPPTIRR-----CF-SHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHA---L 600 (934)
Q Consensus 530 Tn~~~~Ld~aLrr-----rF-~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~---L 600 (934)
.|.-+ +|..+.. |. ..+|.|.+.+..|..+|+...++....+ ....++-+|+ .-+-+.+|.+. +
T Consensus 548 aNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f-----~~~aielvar-kVAavSGDaRraldi 620 (767)
T KOG1514|consen 548 ANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAF-----ENKAIELVAR-KVAAVSGDARRALDI 620 (767)
T ss_pred ccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhc-----chhHHHHHHH-HHHhccccHHHHHHH
Confidence 76644 4444432 42 2489999999999999999988765322 1222333344 33444444433 5
Q ss_pred HHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhh
Q 002337 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSK 657 (934)
Q Consensus 601 ~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k 657 (934)
|+.|+..+-.+.. .. ..+....++.-++.+|+..+.
T Consensus 621 c~RA~Eia~~~~~-~~--------------------k~~~~q~v~~~~v~~Ai~em~ 656 (767)
T KOG1514|consen 621 CRRAAEIAEERNV-KG--------------------KLAVSQLVGILHVMEAINEML 656 (767)
T ss_pred HHHHHHHhhhhcc-cc--------------------cccccceeehHHHHHHHHHHh
Confidence 6666655543321 00 111245677788888887764
No 427
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.90 E-value=2.6e-05 Score=95.97 Aligned_cols=136 Identities=21% Similarity=0.217 Sum_probs=79.5
Q ss_pred CCCCCcceecCCCCCcchHHHHHHHHHcC-------CcEEEecCccccccccch-hhh-hh-HHHHHHHHhCCCcEEEec
Q 002337 681 LRKRSGVLLYGPPGTGKTLLAKAVATECS-------LNFLSVKGPELINMYIGE-SEK-NV-RDIFQKARSARPCVIFFD 750 (934)
Q Consensus 681 ~~~~~~iLl~GppGtGKT~lakalA~~~~-------~~~i~v~~~~l~~~~~Ge-se~-~v-~~lf~~A~~~~p~vlfiD 750 (934)
++...+|||.|+||||||.+|++++.... .++..+.+..... +.+. +.. .+ ...+.. +...+++||
T Consensus 489 iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvl---AdgGtL~ID 564 (915)
T PTZ00111 489 FRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVL---ANGGVCCID 564 (915)
T ss_pred ccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEE---cCCCeEEec
Confidence 45567999999999999999999987543 2333333322211 0000 000 00 001112 223599999
Q ss_pred cccccccCCCCCCCCchhHHHHHHhhhhhccCC----------cCCCCCEEEEEEcCCCC-------------CCChhhh
Q 002337 751 ELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL----------NDSSQDLFIIGASNRPD-------------LIDPALL 807 (934)
Q Consensus 751 Eid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~----------~~~~~~v~vI~aTNrp~-------------~lD~all 807 (934)
|+|.+.. .....|+..|+.- ..-..++.||||+|... .|+++|+
T Consensus 565 Eidkms~-------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LL 631 (915)
T PTZ00111 565 ELDKCHN-------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLF 631 (915)
T ss_pred chhhCCH-------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHh
Confidence 9999852 2233344444321 11135789999999742 4679999
Q ss_pred CCCCcceeeeecCCCCHHHHHHHHHHHH
Q 002337 808 RPGRFDKLLYVGVNSDVSYRERVLKALT 835 (934)
Q Consensus 808 rpGRfd~~i~v~~Pp~~~~r~~Il~~~~ 835 (934)
. |||-...+--+|+.+.-..|-.+.+
T Consensus 632 S--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 632 T--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred h--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 9 9998766654577665555544443
No 428
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=0.00036 Score=79.20 Aligned_cols=217 Identities=21% Similarity=0.207 Sum_probs=130.0
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHHc-----CCcEEEecCccccc----------cc----cc-hhhhhhHHHHHHH
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELIN----------MY----IG-ESEKNVRDIFQKA 739 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~----------~~----~G-ese~~v~~lf~~A 739 (934)
..+.+..+.+.|-||||||.+...+-... +...++++|..|-. .+ .| .++.+....|.+-
T Consensus 171 e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h 250 (529)
T KOG2227|consen 171 ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKH 250 (529)
T ss_pred hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 45567889999999999999988664332 23568888865321 11 11 2223333444432
Q ss_pred -HhC-CCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCC----CCcc
Q 002337 740 -RSA-RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRP----GRFD 813 (934)
Q Consensus 740 -~~~-~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrp----GRfd 813 (934)
.+. .+-++++||+|.|+.++ ..++..+ -+++.+. ..++++||..|..|+-|..|-|- +--.
T Consensus 251 ~~q~k~~~llVlDEmD~L~tr~----------~~vLy~l-Fewp~lp--~sr~iLiGiANslDlTdR~LprL~~~~~~~P 317 (529)
T KOG2227|consen 251 TKQSKFMLLLVLDEMDHLITRS----------QTVLYTL-FEWPKLP--NSRIILIGIANSLDLTDRFLPRLNLDLTIKP 317 (529)
T ss_pred HhcccceEEEEechhhHHhhcc----------cceeeee-hhcccCC--cceeeeeeehhhhhHHHHHhhhhhhccCCCC
Confidence 223 36799999999998432 1233333 3445553 46799999999998877665441 1224
Q ss_pred eeeeecCCCCHHHHHHHHHHHHhcCCCCcCC--CHHHHHhhCCCCCCHHHHHH---HHHHHHHHHHHHHhcccCCCCCCc
Q 002337 814 KLLYVGVNSDVSYRERVLKALTRKFKLLEDV--SLYSIAKKCPPNFTGADMYA---LCADAWFHAAKRKVLSSDSNSDSS 888 (934)
Q Consensus 814 ~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~--~l~~la~~~t~g~sgaDl~~---l~~~A~~~A~~r~~~~~~~~~~~~ 888 (934)
+.+.|+ |+..++-.+|++..+......... -+.-.|+++ .|-|| |++. +|++|...|-.+.....+.. ...
T Consensus 318 ~~l~F~-PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKv-aa~SG-DlRkaLdv~R~aiEI~E~e~r~~~~~~-l~~ 393 (529)
T KOG2227|consen 318 KLLVFP-PYTKDQIVEILQQRLSEESTSIFLNAAIELCARKV-AAPSG-DLRKALDVCRRAIEIAEIEKRKILDDP-LSP 393 (529)
T ss_pred ceeeec-CCCHHHHHHHHHHHHhcccccccchHHHHHHHHHh-ccCch-hHHHHHHHHHHHHHHHHHHHhhccccC-CCC
Confidence 578888 699999999998888776544333 356677775 66665 7764 46776665543332211110 000
Q ss_pred cccccCcccccHHHHHHHHHhhCCC
Q 002337 889 RIDQADSVVVEYDDFVKVLRELSPS 913 (934)
Q Consensus 889 ~~~~~~~~~it~~df~~al~~~~ps 913 (934)
.......-+|..+|+..++.++--+
T Consensus 394 ~~~p~~~~~v~~~~va~viSk~~~s 418 (529)
T KOG2227|consen 394 GTSPEKKKKVGVEHVAAVISKVDGS 418 (529)
T ss_pred CCCcccccccchHHHHHHhhhhccC
Confidence 0001111346677888877776443
No 429
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.90 E-value=3.5e-05 Score=95.54 Aligned_cols=149 Identities=13% Similarity=0.126 Sum_probs=96.5
Q ss_pred CCceEEEECCCCCcHHHH-HHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcC--------------CCEEE
Q 002337 396 FRVAVLLHGLPGCGKRTV-VRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSY--------------SPTIL 460 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtL-aralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~--------------~P~IL 460 (934)
..++++++||||+|||++ .-++-.++-..++.+|-+.- ..++..+..+-+....+ ...++
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~-----t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVL 1567 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTC-----TMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVL 1567 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccc-----cCCHHHHHHHHhhceeeccCCeEEEccCcchhheEE
Confidence 346799999999999996 56777777777887776531 11233333332222211 13699
Q ss_pred EEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCC---
Q 002337 461 LLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLP--- 537 (934)
Q Consensus 461 ~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld--- 537 (934)
|.|||+ .|...+.+.+ .+.-.++.+++ .+|+|.........-.++++.|+||.+.+..
T Consensus 1568 FcDeIn--Lp~~~~y~~~--------~vI~FlR~l~e---------~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~ 1628 (3164)
T COG5245 1568 FCDEIN--LPYGFEYYPP--------TVIVFLRPLVE---------RQGFWSSIAVSWVTICGIILYGACNPGTDEGRVK 1628 (3164)
T ss_pred EeeccC--CccccccCCC--------ceEEeeHHHHH---------hcccccchhhhHhhhcceEEEccCCCCCCcccCc
Confidence 999998 3433233222 22223344443 4677777777778888999999999987643
Q ss_pred --hhhhcccceEEEcCCCCHHHHHHHHHHhcccc
Q 002337 538 --PTIRRCFSHEISMGPLTEQQRVEMLSQLLQPV 569 (934)
Q Consensus 538 --~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~ 569 (934)
..+.|+-. -+..+.|.-.....|.++++...
T Consensus 1629 ~~eRf~r~~v-~vf~~ype~~SL~~Iyea~l~~s 1661 (3164)
T COG5245 1629 YYERFIRKPV-FVFCCYPELASLRNIYEAVLMGS 1661 (3164)
T ss_pred cHHHHhcCce-EEEecCcchhhHHHHHHHHHHHH
Confidence 44444432 57788999999999998877543
No 430
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.90 E-value=6.1e-06 Score=80.96 Aligned_cols=59 Identities=31% Similarity=0.573 Sum_probs=43.3
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC---cEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL---NFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLA 756 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~---~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~ 756 (934)
...|+|+|++||||+++|+++....+. +|+.+++.++- .++++.+ ...+|||+|+|.+.
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC
Confidence 578999999999999999999876643 56666654431 4566665 55699999999995
No 431
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=7.4e-05 Score=83.52 Aligned_cols=131 Identities=14% Similarity=0.205 Sum_probs=83.8
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcE----------------EEecCccccccc--cch--hhhhhHHHHHHHH--
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNF----------------LSVKGPELINMY--IGE--SEKNVRDIFQKAR-- 740 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~----------------i~v~~~~l~~~~--~Ge--se~~v~~lf~~A~-- 740 (934)
.+..+||+||.|+||+++|+++|..+...- -.-+-+|+..-. -|. .-..+|++-+.+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 356889999999999999999998652200 000012221110 111 1234666655543
Q ss_pred --hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeee
Q 002337 741 --SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYV 818 (934)
Q Consensus 741 --~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v 818 (934)
.+...|++||++|.+. ...-|.||+.|+.- ..++++|.+|+.++.|-|.+++ |.. .+.|
T Consensus 103 ~~~g~~KV~iI~~a~~m~-------------~~AaNaLLKtLEEP---p~~~~fiL~t~~~~~llpTI~S--RC~-~~~~ 163 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLT-------------EAAANALLKTLEEP---RPNTYFLLQADLSAALLPTIYS--RCQ-TWLI 163 (325)
T ss_pred cccCCceEEEEechhhhC-------------HHHHHHHHHHhcCC---CCCeEEEEEECChHhCchHHHh--hce-EEeC
Confidence 2344699999999985 34567788877753 4567777788889999999998 764 5667
Q ss_pred cCCCCHHHHHHHHHH
Q 002337 819 GVNSDVSYRERVLKA 833 (934)
Q Consensus 819 ~~Pp~~~~r~~Il~~ 833 (934)
+. +..+.-.+.|..
T Consensus 164 ~~-~~~~~~~~~L~~ 177 (325)
T PRK06871 164 HP-PEEQQALDWLQA 177 (325)
T ss_pred CC-CCHHHHHHHHHH
Confidence 74 555655555544
No 432
>PRK13409 putative ATPase RIL; Provisional
Probab=97.89 E-value=8.5e-06 Score=98.65 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=29.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEe
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~ 429 (934)
..+.-+.|.||||+|||||++.+++.+.+..+.+.
T Consensus 97 ~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~ 131 (590)
T PRK13409 97 KEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE 131 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccCCCcccc
Confidence 34445999999999999999999999877777765
No 433
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.88 E-value=0.00029 Score=83.56 Aligned_cols=171 Identities=17% Similarity=0.286 Sum_probs=95.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcccc-------ccccc---h---HHH---HHHH-HHHhhc------
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA-------SSERK---T---SAA---LAQA-FNTAQS------ 454 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~-------~~~g~---~---e~~---L~~~-f~~A~~------ 454 (934)
+-+||+||+||||||+++.+|+++|..+.+-..+.... .+.+. . ... .... +..++.
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~ 125 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMS 125 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 35788999999999999999999999888764432210 01110 0 011 1111 111121
Q ss_pred -----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc-cEEEEE
Q 002337 455 -----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ-QVLLVA 528 (934)
Q Consensus 455 -----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~-~ViVIa 528 (934)
....||+|+|+-.+... ....+..+|.+++.. .+. ++++|.
T Consensus 126 g~~~~~~~kvILVEDlPN~~~~------------~~~~f~~~L~~~l~~---------------------~~~~PlV~ii 172 (519)
T PF03215_consen 126 GSNSSSNKKVILVEDLPNVFHR------------DTSRFREALRQYLRS---------------------SRCLPLVFII 172 (519)
T ss_pred CCCcCCCceEEEeeccccccch------------hHHHHHHHHHHHHHc---------------------CCCCCEEEEE
Confidence 24679999998754431 115666677766532 123 777777
Q ss_pred e-cC------CCC--------CCChhhhc-ccceEEEcCCCCHHHHHHHHHHhccccc----cccCCCCchHHHHHHHhh
Q 002337 529 A-AD------SSE--------GLPPTIRR-CFSHEISMGPLTEQQRVEMLSQLLQPVS----ELTSDTGSEEFVKDIIGQ 588 (934)
Q Consensus 529 t-Tn------~~~--------~Ld~aLrr-rF~~eI~i~~Pde~~R~~IL~~ll~~~~----~l~~d~~~~~~L~~la~~ 588 (934)
+ +. ... -+++.+.. .-...|.|.+-...-....|+..+.... ....-......++.++..
T Consensus 173 Se~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~ 252 (519)
T PF03215_consen 173 SETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAES 252 (519)
T ss_pred ecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHh
Confidence 7 11 111 25666655 3445899998888766666655543320 000011123346777766
Q ss_pred cCCCChHHHHHHHHHHH
Q 002337 589 TSGFMPRDLHALVADAG 605 (934)
Q Consensus 589 t~Gfv~~DL~~L~~~A~ 605 (934)
+. +||+..+..-.
T Consensus 253 s~----GDIRsAIn~LQ 265 (519)
T PF03215_consen 253 SN----GDIRSAINNLQ 265 (519)
T ss_pred cC----chHHHHHHHHH
Confidence 54 57776665433
No 434
>PF05729 NACHT: NACHT domain
Probab=97.87 E-value=0.00013 Score=72.84 Aligned_cols=140 Identities=16% Similarity=0.316 Sum_probs=76.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCC---------cEEEEecCccccccc------------cchHHHHHH-HHHHhhcCC
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGI---------HVVEYSCHNLMASSE------------RKTSAALAQ-AFNTAQSYS 456 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~---------~~~~I~~~~L~~~~~------------g~~e~~L~~-~f~~A~~~~ 456 (934)
-++|+|++|+|||++++.++..+.. ..+.+.+.+...... ......... .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 3799999999999999999988721 223333333222110 011111111 112233456
Q ss_pred CEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCC
Q 002337 457 PTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGL 536 (934)
Q Consensus 457 P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~L 536 (934)
..+++||.+|.+...... .....+...+..++... ...++-++-++ ++...
T Consensus 82 ~~llilDglDE~~~~~~~--------~~~~~~~~~l~~l~~~~--------------------~~~~~~liit~-r~~~~ 132 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS--------QERQRLLDLLSQLLPQA--------------------LPPGVKLIITS-RPRAF 132 (166)
T ss_pred ceEEEEechHhcccchhh--------hHHHHHHHHHHHHhhhc--------------------cCCCCeEEEEE-cCChH
Confidence 789999999988752110 11223444454444320 02223333333 23322
Q ss_pred Chhhhcccc--eEEEcCCCCHHHHHHHHHHhccc
Q 002337 537 PPTIRRCFS--HEISMGPLTEQQRVEMLSQLLQP 568 (934)
Q Consensus 537 d~aLrrrF~--~eI~i~~Pde~~R~~IL~~ll~~ 568 (934)
+. +.+.+. ..+.+...+++++.++++.++++
T Consensus 133 ~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 133 PD-LRRRLKQAQILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred HH-HHHhcCCCcEEEECCCCHHHHHHHHHHHhhc
Confidence 22 433322 46899999999999999988753
No 435
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.87 E-value=0.00018 Score=77.00 Aligned_cols=43 Identities=33% Similarity=0.535 Sum_probs=35.5
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHHcCC--cEEEecCccccc
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECSL--NFLSVKGPELIN 722 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~~~~--~~i~v~~~~l~~ 722 (934)
|.-.++.+|+.|+||+|||.+|-.+++.+|. +|.++.++++++
T Consensus 62 gkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~S 106 (454)
T KOG2680|consen 62 GKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYS 106 (454)
T ss_pred CcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeee
Confidence 3334788999999999999999999998864 788888877764
No 436
>PF13173 AAA_14: AAA domain
Probab=97.86 E-value=2.6e-05 Score=75.38 Aligned_cols=69 Identities=26% Similarity=0.374 Sum_probs=46.8
Q ss_pred CcceecCCCCCcchHHHHHHHHHcC--CcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEecccccc
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECS--LNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSL 755 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~--~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l 755 (934)
.-++++||.|+|||++++.++.... .++++++..+.........+ +.+.|.......+.+|||||+..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 5678999999999999999998876 77888887654332111111 223333322225689999999887
No 437
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.86 E-value=1.3e-05 Score=78.56 Aligned_cols=59 Identities=29% Similarity=0.459 Sum_probs=42.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC---cEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGI---HVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRN 470 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~---~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~ 470 (934)
.+|+|+|++||||+++|+++....+. .++.++|..+. .+.++.+ .++.++|+|+|.+.+
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~ 83 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSP 83 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-H
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCH
Confidence 45999999999999999999988753 45556665422 3344444 578999999998865
No 438
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.85 E-value=2.2e-05 Score=84.74 Aligned_cols=61 Identities=16% Similarity=0.243 Sum_probs=44.9
Q ss_pred hhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCc-----------hHHHHHHHhhcCC---CChHHHHHHHHH
Q 002337 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-----------EEFVKDIIGQTSG---FMPRDLHALVAD 603 (934)
Q Consensus 540 LrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~-----------~~~L~~la~~t~G---fv~~DL~~L~~~ 603 (934)
+-.|+...++.+ +.||.++.+.+.-.+..|.+|... ..||.++-..+.. |+.||.....+-
T Consensus 130 la~ryP~QLSGG---QrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~l 204 (345)
T COG1118 130 LADRYPAQLSGG---QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALEL 204 (345)
T ss_pred hhhcCchhcChH---HHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhh
Confidence 445788899999 999999999999888877666543 4566666666554 788887665543
No 439
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.85 E-value=2.8e-05 Score=84.32 Aligned_cols=72 Identities=22% Similarity=0.466 Sum_probs=50.5
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccchhhh-hhHHHHHHHHhCCCcEEEecccccc
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEK-NVRDIFQKARSARPCVIFFDELDSL 755 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Gese~-~v~~lf~~A~~~~p~vlfiDEid~l 755 (934)
.+.+++|+||||+|||+||-|++.++ |..++.++.++++...-..-.. ....-+.+. -....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 57899999999999999999998876 7788999988887654321111 111111210 123469999998765
No 440
>PRK06921 hypothetical protein; Provisional
Probab=97.84 E-value=2.4e-05 Score=85.49 Aligned_cols=68 Identities=25% Similarity=0.315 Sum_probs=45.9
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc----CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC----SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDS 754 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~----~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~ 754 (934)
..+++|+||||+|||+|+.|+|+++ +..++++...+++...... .....+.++.. ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 5789999999999999999999875 5667777766665432111 11112222332 3457999999944
No 441
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.82 E-value=6.3e-05 Score=74.43 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=32.7
Q ss_pred ccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 002337 385 PTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (934)
Q Consensus 385 p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~ 426 (934)
+.+++-.+.+..+..+++.||+||||||+.|++|.......+
T Consensus 17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G 58 (223)
T COG4619 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSG 58 (223)
T ss_pred eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCc
Confidence 445555666666677999999999999999999998754433
No 442
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.00015 Score=81.05 Aligned_cols=159 Identities=16% Similarity=0.228 Sum_probs=95.7
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCc----------EEEecCccccccc-----cchh--------------------
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLN----------FLSVKGPELINMY-----IGES-------------------- 728 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~----------~i~v~~~~l~~~~-----~Ges-------------------- 728 (934)
+..+||+||+|+||+++|+++|+.+-.. +...+-||+.--+ -|..
T Consensus 26 ~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~ 105 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIR 105 (314)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCc
Confidence 5689999999999999999998875211 1122223332110 0110
Q ss_pred hhhhHHHHHHHHh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCCh
Q 002337 729 EKNVRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDP 804 (934)
Q Consensus 729 e~~v~~lf~~A~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~ 804 (934)
-..+|++.+.+.. ....|++||++|.+. ....|.||..|+... ..+ +|..|+.++.|-|
T Consensus 106 id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~-------------~~aaNaLLK~LEEPp---~~~-fILi~~~~~~Ll~ 168 (314)
T PRK07399 106 LEQIREIKRFLSRPPLEAPRKVVVIEDAETMN-------------EAAANALLKTLEEPG---NGT-LILIAPSPESLLP 168 (314)
T ss_pred HHHHHHHHHHHccCcccCCceEEEEEchhhcC-------------HHHHHHHHHHHhCCC---CCe-EEEEECChHhCcH
Confidence 1245666555432 345799999999884 234567777777653 234 4556678899999
Q ss_pred hhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHH
Q 002337 805 ALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCA 867 (934)
Q Consensus 805 allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~ 867 (934)
.+++ |. ..+.|+ |++.++-.++|+.....-.. +.+...++... +-+..+..++++
T Consensus 169 TI~S--Rc-q~i~f~-~l~~~~~~~~L~~~~~~~~~--~~~~~~l~~~a--~Gs~~~al~~l~ 223 (314)
T PRK07399 169 TIVS--RC-QIIPFY-RLSDEQLEQVLKRLGDEEIL--NINFPELLALA--QGSPGAAIANIE 223 (314)
T ss_pred HHHh--hc-eEEecC-CCCHHHHHHHHHHhhccccc--hhHHHHHHHHc--CCCHHHHHHHHH
Confidence 9998 86 577787 46677777777654321111 12245666652 334444444443
No 443
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.80 E-value=0.00023 Score=84.80 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=48.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCcccccc---------ccchH----HHHHHHHHHhhcCCCEEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASS---------ERKTS----AALAQAFNTAQSYSPTIL 460 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~---------~g~~e----~~L~~~f~~A~~~~P~IL 460 (934)
..+|||+|++||||+++|+++.... +.+|+.|||..+.... .|... ..-...|+.| ..+.|
T Consensus 235 ~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTL 311 (526)
T TIGR02329 235 DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTL 311 (526)
T ss_pred CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhc---CCceE
Confidence 3469999999999999999998764 5689999998653211 00000 0011233433 35789
Q ss_pred EEcchhhccc
Q 002337 461 LLRDFDVFRN 470 (934)
Q Consensus 461 ~IDEID~L~~ 470 (934)
|||||+.|..
T Consensus 312 fLdeI~~Lp~ 321 (526)
T TIGR02329 312 FLDEIGEMPL 321 (526)
T ss_pred EecChHhCCH
Confidence 9999998765
No 444
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.0001 Score=83.11 Aligned_cols=131 Identities=18% Similarity=0.256 Sum_probs=84.7
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHcCCc----------------EEEecCccccccccch-----hhhhhHHHHHHHH
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATECSLN----------------FLSVKGPELINMYIGE-----SEKNVRDIFQKAR 740 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~~~~----------------~i~v~~~~l~~~~~Ge-----se~~v~~lf~~A~ 740 (934)
+.+..+||+||+|+||+++|.++|..+-.. +-.-+-+|+.--.... +-..+|++-+.+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 446788999999999999999998865210 0001112221111110 1234555555443
Q ss_pred ----hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceee
Q 002337 741 ----SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLL 816 (934)
Q Consensus 741 ----~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i 816 (934)
.+...|++||++|.+. ...-|.||+.|+.- ..++++|-.|+.|+.|-|-+++ |.. .+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~-------------~~AaNaLLKtLEEP---p~~t~fiL~t~~~~~lLpTIrS--RCq-~~ 162 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT-------------DAAANALLKTLEEP---PENTWFFLACREPARLLATLRS--RCR-LH 162 (334)
T ss_pred hccccCCceEEEEcchHhhC-------------HHHHHHHHHHhcCC---CCCeEEEEEECChhhChHHHHh--ccc-cc
Confidence 3445699999999985 34567888887753 3567777788889999999998 886 56
Q ss_pred eecCCCCHHHHHHHHH
Q 002337 817 YVGVNSDVSYRERVLK 832 (934)
Q Consensus 817 ~v~~Pp~~~~r~~Il~ 832 (934)
.++. |+.+.-.+.|.
T Consensus 163 ~~~~-~~~~~~~~~L~ 177 (334)
T PRK07993 163 YLAP-PPEQYALTWLS 177 (334)
T ss_pred cCCC-CCHHHHHHHHH
Confidence 8874 55555555553
No 445
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.80 E-value=3.6e-05 Score=82.62 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=31.4
Q ss_pred cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcE--EEEecCccc
Q 002337 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHV--VEYSCHNLM 434 (934)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTtLaralA~elg~~~--~~I~~~~L~ 434 (934)
.++.+.-+.|.||||||||||+|++++.+.+.- +.+++.++.
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~ 67 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIA 67 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchh
Confidence 344445599999999999999999999987654 445554443
No 446
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.80 E-value=0.00021 Score=84.74 Aligned_cols=172 Identities=20% Similarity=0.284 Sum_probs=93.1
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccc-------ccccchhh---------hhhHHH-HHHHHh-----
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI-------NMYIGESE---------KNVRDI-FQKARS----- 741 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~-------~~~~Gese---------~~v~~l-f~~A~~----- 741 (934)
..-+||+||||||||++++++|++++..+.....+... ..|.+... ....+. +..++.
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~ 124 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSM 124 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccc
Confidence 34567899999999999999999999888775433221 11111111 011111 111121
Q ss_pred ------CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCC-CEEEEEE-c------CCC--------
Q 002337 742 ------ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQ-DLFIIGA-S------NRP-------- 799 (934)
Q Consensus 742 ------~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~-~v~vI~a-T------Nrp-------- 799 (934)
..+.||++||+-.++.. +. .....++.+++.. ... .+++|.+ + |..
T Consensus 125 ~g~~~~~~~kvILVEDlPN~~~~-----~~-~~f~~~L~~~l~~------~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~ 192 (519)
T PF03215_consen 125 SGSNSSSNKKVILVEDLPNVFHR-----DT-SRFREALRQYLRS------SRCLPLVFIISETESLSGDNSYRSNSFTAE 192 (519)
T ss_pred cCCCcCCCceEEEeeccccccch-----hH-HHHHHHHHHHHHc------CCCCCEEEEEecccccCCCCcccccchhhh
Confidence 24679999999866532 22 3344555555543 122 5666655 1 111
Q ss_pred CCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcC--------CCCcCCC-HHHHHhhCCCCCCHHHHHHHHHHHH
Q 002337 800 DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF--------KLLEDVS-LYSIAKKCPPNFTGADMYALCADAW 870 (934)
Q Consensus 800 ~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~--------~~~~~~~-l~~la~~~t~g~sgaDl~~l~~~A~ 870 (934)
..+.+.++..-+. ..|.|. |-....-..-|+..+... ......+ ++.|++. +++||+..+..-.
T Consensus 193 ~L~~~~il~~~~i-~~I~FN-pIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~-----s~GDIRsAIn~LQ 265 (519)
T PF03215_consen 193 RLFPKEILNHPGI-TRIKFN-PIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAES-----SNGDIRSAINNLQ 265 (519)
T ss_pred hccCHHHHhCCCc-eEEEec-CCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHh-----cCchHHHHHHHHH
Confidence 1466777663344 356666 344433333333333221 1111122 6677766 4589999998766
Q ss_pred HHHH
Q 002337 871 FHAA 874 (934)
Q Consensus 871 ~~A~ 874 (934)
+.+.
T Consensus 266 f~~~ 269 (519)
T PF03215_consen 266 FWCL 269 (519)
T ss_pred HHhc
Confidence 6666
No 447
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=8.9e-05 Score=83.24 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=81.5
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHcCC-------------------------cEEEecCccccccccch-----hhhh
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATECSL-------------------------NFLSVKGPELINMYIGE-----SEKN 731 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~~~-------------------------~~i~v~~~~l~~~~~Ge-----se~~ 731 (934)
+.+..+||+||+|+|||++|+.+|+.+.. +|+.+....- ...-|. .-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHH
Confidence 44668999999999999999999987521 2333322100 000010 1345
Q ss_pred hHHHHHHHHh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhh
Q 002337 732 VRDIFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALL 807 (934)
Q Consensus 732 v~~lf~~A~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~all 807 (934)
+|++.+.+.. ....|+++|+++.+-+ ...+.+++.|+... .++.+|.+|+.++.+.|.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~-------------~a~naLLk~LEep~---~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNL-------------QAANSLLKVLEEPP---PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCH-------------HHHHHHHHHHHhCc---CCCEEEEEeCChHhChHHHH
Confidence 6777776653 3346999999998842 24455666555542 23556668888999999988
Q ss_pred CCCCcceeeeecCCCCHHHHHHHHH
Q 002337 808 RPGRFDKLLYVGVNSDVSYRERVLK 832 (934)
Q Consensus 808 rpGRfd~~i~v~~Pp~~~~r~~Il~ 832 (934)
+ |. ..+.|+. ++.+.-.+.|.
T Consensus 162 S--Rc-~~~~~~~-~~~~~~~~~L~ 182 (325)
T PRK08699 162 S--RC-RKMVLPA-PSHEEALAYLR 182 (325)
T ss_pred H--Hh-hhhcCCC-CCHHHHHHHHH
Confidence 7 76 4566773 66665555554
No 448
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.80 E-value=2.3e-05 Score=85.45 Aligned_cols=167 Identities=20% Similarity=0.368 Sum_probs=102.5
Q ss_pred CCcceecCCCCCcchHHHHHHHH---HcCCcEEEecCccc---------cccccchhhhhhHHHHHHHHhCCCcEEEecc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVAT---ECSLNFLSVKGPEL---------INMYIGESEKNVRDIFQKARSARPCVIFFDE 751 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~---~~~~~~i~v~~~~l---------~~~~~Gese~~v~~lf~~A~~~~p~vlfiDE 751 (934)
...+|+.|.+||||-++||+--. ....+|+.++|..+ ++.-.|. +.-..+|+.|.+. .+|+||
T Consensus 227 DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~--~gk~GffE~AngG---TVlLDe 301 (511)
T COG3283 227 DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGD--EGKKGFFEQANGG---TVLLDE 301 (511)
T ss_pred CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCC--CCccchhhhccCC---eEEeeh
Confidence 35789999999999999998643 33679999999554 3333442 2334688887665 899999
Q ss_pred ccccccCCCCCCCCchhHHHHHHhhhhhcc-CC-------cCCCCCEEEEEEcCCCCCCChhhhCCCCcce-------ee
Q 002337 752 LDSLAPARGASGDSGGVMDRVVSQMLAEID-GL-------NDSSQDLFIIGASNRPDLIDPALLRPGRFDK-------LL 816 (934)
Q Consensus 752 id~l~~~r~~~~~~~~~~~~v~~~lL~~ld-g~-------~~~~~~v~vI~aTNrp~~lD~allrpGRfd~-------~i 816 (934)
|..+.+ ++...||+.+. |. .+..-+|.||+||..+- ..+...|+|.. ++
T Consensus 302 IgEmSp-------------~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL---~~lv~~g~fReDLfyRLNVL 365 (511)
T COG3283 302 IGEMSP-------------RLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNL---VELVQKGKFREDLFYRLNVL 365 (511)
T ss_pred hhhcCH-------------HHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccH---HHHHhcCchHHHHHHHhhee
Confidence 977753 45666666543 21 11123699999998762 23344455533 34
Q ss_pred eecCCCCHHHHHHHH-------HHHHhcCCCC-c--CCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002337 817 YVGVNSDVSYRERVL-------KALTRKFKLL-E--DVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 873 (934)
Q Consensus 817 ~v~~Pp~~~~r~~Il-------~~~~~~~~~~-~--~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A 873 (934)
.+.+||-.+.-.+|. +.+..+.... + +.++.....+ .+|-| ++|+|.+-+|+...
T Consensus 366 tl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~--y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 366 TLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTR--YAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred eecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH--cCCCccHHHHHHHHHHHHHHh
Confidence 566778777666653 2222332221 1 2233333333 46766 68888877766443
No 449
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.79 E-value=2.9e-05 Score=83.05 Aligned_cols=40 Identities=28% Similarity=0.234 Sum_probs=32.9
Q ss_pred cccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
.|.+..+..+.|+|.+||||||++|.+.+...+..++|-.
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f 72 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILF 72 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEE
Confidence 4455667779999999999999999999998877666543
No 450
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.79 E-value=6.6e-05 Score=89.10 Aligned_cols=155 Identities=21% Similarity=0.189 Sum_probs=94.0
Q ss_pred CCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCc-cccccccchHHHHHHHHHHhhcCCCEEEEEcch
Q 002337 387 LCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHN-LMASSERKTSAALAQAFNTAQSYSPTILLLRDF 465 (934)
Q Consensus 387 l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~-L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEI 465 (934)
+.+-.+.+..+.-|.|+||||+|||||++.+++.++...+.|.+.. +.-.|..+....+ + +.--++|++
T Consensus 338 ~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l---~-------~~~t~~d~l 407 (530)
T COG0488 338 LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDEL---D-------PDKTVLEEL 407 (530)
T ss_pred ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhc---C-------ccCcHHHHH
Confidence 3444455556666999999999999999999999987766665432 2222222111100 0 111222333
Q ss_pred hhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccc
Q 002337 466 DVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFS 545 (934)
Q Consensus 466 D~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~ 545 (934)
....+ + ....++...|.++. ++......-.
T Consensus 408 ~~~~~---------~--~~e~~~r~~L~~f~---------------------------------------F~~~~~~~~v 437 (530)
T COG0488 408 SEGFP---------D--GDEQEVRAYLGRFG---------------------------------------FTGEDQEKPV 437 (530)
T ss_pred HhhCc---------c--ccHHHHHHHHHHcC---------------------------------------CChHHHhCch
Confidence 22211 0 00233333343332 1222222222
Q ss_pred eEEEcCCCCHHHHHHHHHHhccccccc-------cCCCCchHHHHHHHhhcCC---CChHHHHHHHHHH
Q 002337 546 HEISMGPLTEQQRVEMLSQLLQPVSEL-------TSDTGSEEFVKDIIGQTSG---FMPRDLHALVADA 604 (934)
Q Consensus 546 ~eI~i~~Pde~~R~~IL~~ll~~~~~l-------~~d~~~~~~L~~la~~t~G---fv~~DL~~L~~~A 604 (934)
..++.| ++.|+.+.+.++..+..+ |+|++....|++....++| +++||..++-+-|
T Consensus 438 ~~LSGG---Ek~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va 503 (530)
T COG0488 438 GVLSGG---EKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVA 503 (530)
T ss_pred hhcCHh---HHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhc
Confidence 478888 999999999998877655 5666667788889999999 9999999987754
No 451
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=0.00043 Score=78.56 Aligned_cols=168 Identities=20% Similarity=0.217 Sum_probs=106.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC-----CcEEEEecCccccc----------c-----ccchHHHHHHHHHHhh-
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLG-----IHVVEYSCHNLMAS----------S-----ERKTSAALAQAFNTAQ- 453 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg-----~~~~~I~~~~L~~~----------~-----~g~~e~~L~~~f~~A~- 453 (934)
+-+.++.+.|.||+|||.+..-+-..++ ...+.+||-+|... . ...+.......|+.-.
T Consensus 173 ~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~ 252 (529)
T KOG2227|consen 173 NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTK 252 (529)
T ss_pred ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Confidence 4556799999999999999887766552 35578899864321 1 0112222233333222
Q ss_pred cC-CCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCC
Q 002337 454 SY-SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADS 532 (934)
Q Consensus 454 ~~-~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~ 532 (934)
.. .+-++++||+|.|.... + .+.-.|-+| ......++++||.+|.
T Consensus 253 q~k~~~llVlDEmD~L~tr~-~------------~vLy~lFew---------------------p~lp~sr~iLiGiANs 298 (529)
T KOG2227|consen 253 QSKFMLLLVLDEMDHLITRS-Q------------TVLYTLFEW---------------------PKLPNSRIILIGIANS 298 (529)
T ss_pred cccceEEEEechhhHHhhcc-c------------ceeeeehhc---------------------ccCCcceeeeeeehhh
Confidence 22 47899999999998521 0 111111111 1223678899999998
Q ss_pred CCCCChhhhc------ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 533 SEGLPPTIRR------CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 533 ~~~Ld~aLrr------rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
.+--|..|-+ .-...+.|++++.+|..+|++..+...+. .......++-.|+...|-+| |++.+
T Consensus 299 lDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t---~~~~~~Aie~~ArKvaa~SG-DlRka 368 (529)
T KOG2227|consen 299 LDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST---SIFLNAAIELCARKVAAPSG-DLRKA 368 (529)
T ss_pred hhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc---cccchHHHHHHHHHhccCch-hHHHH
Confidence 8654433322 24568999999999999999998876544 22334567778888887666 55543
No 452
>PRK06526 transposase; Provisional
Probab=97.75 E-value=2.4e-05 Score=84.84 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=47.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccc-hHHHHHHHHHHhhcCCCEEEEEcchhhcc
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERK-TSAALAQAFNTAQSYSPTILLLRDFDVFR 469 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~-~e~~L~~~f~~A~~~~P~IL~IDEID~L~ 469 (934)
..+.+++|+||||||||+|+.+++.++ |..+..++..+++...... ....+...+... ..+.+|+|||++.+.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 345679999999999999999998876 5666566665554432110 111222223322 246799999998654
No 453
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.75 E-value=6.6e-05 Score=75.85 Aligned_cols=114 Identities=25% Similarity=0.388 Sum_probs=73.7
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC-----------------------cEEEecCccccccccchhhhhhHHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL-----------------------NFLSVKGPELINMYIGESEKNVRDIFQKAR 740 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~-----------------------~~i~v~~~~l~~~~~Gese~~v~~lf~~A~ 740 (934)
+..+||+||+|+||+++|+++|..+-. +++.++..+-.. .+ .-..++++.+.+.
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~-~i--~i~~ir~i~~~~~ 95 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK-SI--KIDQIREIIEFLS 95 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS-SB--SHHHHHHHHHHCT
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc-hh--hHHHHHHHHHHHH
Confidence 567899999999999999999987521 223332211100 01 1245666666553
Q ss_pred h----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceee
Q 002337 741 S----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLL 816 (934)
Q Consensus 741 ~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i 816 (934)
. ....|++|||+|.+. ....+.||..|+.. ..++++|.+|+.++.|-|.+++ |.- .+
T Consensus 96 ~~~~~~~~KviiI~~ad~l~-------------~~a~NaLLK~LEep---p~~~~fiL~t~~~~~il~TI~S--Rc~-~i 156 (162)
T PF13177_consen 96 LSPSEGKYKVIIIDEADKLT-------------EEAQNALLKTLEEP---PENTYFILITNNPSKILPTIRS--RCQ-VI 156 (162)
T ss_dssp SS-TTSSSEEEEEETGGGS--------------HHHHHHHHHHHHST---TTTEEEEEEES-GGGS-HHHHT--TSE-EE
T ss_pred HHHhcCCceEEEeehHhhhh-------------HHHHHHHHHHhcCC---CCCEEEEEEECChHHChHHHHh--hce-EE
Confidence 2 345699999999985 45678888888865 3567788888889999999998 763 34
Q ss_pred eec
Q 002337 817 YVG 819 (934)
Q Consensus 817 ~v~ 819 (934)
.++
T Consensus 157 ~~~ 159 (162)
T PF13177_consen 157 RFR 159 (162)
T ss_dssp EE-
T ss_pred ecC
Confidence 443
No 454
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.74 E-value=0.00044 Score=82.84 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=46.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccc-----cchH-------HHHHHHHHHhhcCCCEEEEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSE-----RKTS-------AALAQAFNTAQSYSPTILLL 462 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~-----g~~e-------~~L~~~f~~A~~~~P~IL~I 462 (934)
.+|||+|++||||+++|+++-... +.+|+.++|..+..... |... ..-...|+.| ..+.+||
T Consensus 228 ~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~L 304 (520)
T PRK10820 228 APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLL 304 (520)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEE
Confidence 359999999999999999986554 35899999987542100 0000 0001224433 3578999
Q ss_pred cchhhccc
Q 002337 463 RDFDVFRN 470 (934)
Q Consensus 463 DEID~L~~ 470 (934)
|||+.+.+
T Consensus 305 deI~~L~~ 312 (520)
T PRK10820 305 DEIGEMSP 312 (520)
T ss_pred eChhhCCH
Confidence 99998865
No 455
>PRK08181 transposase; Validated
Probab=97.73 E-value=4.9e-05 Score=82.90 Aligned_cols=71 Identities=23% Similarity=0.332 Sum_probs=49.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCcccccccc-chHHHHHHHHHHhhcCCCEEEEEcchhhcc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSER-KTSAALAQAFNTAQSYSPTILLLRDFDVFR 469 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g-~~e~~L~~~f~~A~~~~P~IL~IDEID~L~ 469 (934)
+.+++|+||+|||||.|+.+++.++ |..++.++..+++..... .....+.+.+.... .+-+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEecccccc
Confidence 4579999999999999999999865 667777777776653311 11122333444333 46799999998654
No 456
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.73 E-value=9.2e-05 Score=85.58 Aligned_cols=140 Identities=19% Similarity=0.273 Sum_probs=80.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccc---------cccccchHHHHH---HHHHHhhcCCCEEEEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLM---------ASSERKTSAALA---QAFNTAQSYSPTILLL 462 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~---------~~~~g~~e~~L~---~~f~~A~~~~P~IL~I 462 (934)
.+||++|++||||-++||+|-..- +.+|+.|||..+. +...|...+... ..|+.| ..+.|||
T Consensus 165 a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfL 241 (464)
T COG2204 165 ASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFL 241 (464)
T ss_pred CCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEc---CCceEEe
Confidence 459999999999999999998765 4699999998543 222222222211 134444 4689999
Q ss_pred cchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCC-------
Q 002337 463 RDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG------- 535 (934)
Q Consensus 463 DEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~------- 535 (934)
|||..+.. .....+..+|.+- ..+..+|. ..-.-.|-||+|||....
T Consensus 242 DEI~~mpl------------~~Q~kLLRvLqe~-------~~~rvG~~-------~~i~vdvRiIaaT~~dL~~~v~~G~ 295 (464)
T COG2204 242 DEIGEMPL------------ELQVKLLRVLQER-------EFERVGGN-------KPIKVDVRIIAATNRDLEEEVAAGR 295 (464)
T ss_pred eccccCCH------------HHHHHHHHHHHcC-------eeEecCCC-------cccceeeEEEeecCcCHHHHHHcCC
Confidence 99997754 1223333333221 11112221 112456889999987522
Q ss_pred CChhhhcccceEEEcCCCCHHHHHH----HHHHhcc
Q 002337 536 LPPTIRRCFSHEISMGPLTEQQRVE----MLSQLLQ 567 (934)
Q Consensus 536 Ld~aLrrrF~~eI~i~~Pde~~R~~----IL~~ll~ 567 (934)
+-+.|..|+. .+.+..|.-.+|.+ +++++++
T Consensus 296 FReDLyyRLn-V~~i~iPpLRER~EDIp~L~~hfl~ 330 (464)
T COG2204 296 FREDLYYRLN-VVPLRLPPLRERKEDIPLLAEHFLK 330 (464)
T ss_pred cHHHHHhhhc-cceecCCcccccchhHHHHHHHHHH
Confidence 3334444543 45555555555554 4444443
No 457
>PRK09183 transposase/IS protein; Provisional
Probab=97.73 E-value=6.7e-05 Score=81.66 Aligned_cols=73 Identities=15% Similarity=0.288 Sum_probs=49.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCcccccccc-chHHHHHHHHHHhhcCCCEEEEEcchhhc
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSER-KTSAALAQAFNTAQSYSPTILLLRDFDVF 468 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g-~~e~~L~~~f~~A~~~~P~IL~IDEID~L 468 (934)
..+.+++|+||||||||+|+.+++..+ |..+..+++.++...... .....+...+.... ..+.+++|||++.+
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~ 176 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYL 176 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccC
Confidence 445679999999999999999998764 667777777666533211 11122344454432 35679999999754
No 458
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.73 E-value=9.9e-05 Score=82.12 Aligned_cols=142 Identities=19% Similarity=0.286 Sum_probs=83.8
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCc-EEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccc
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIH-VVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRN 470 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~-~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~ 470 (934)
+.++.+.++.|+|.+|+||||+.+++.+.+... -+.+.+.++.+. +...++-+- ..--++|-|=..+|.|
T Consensus 308 l~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~----~~~~mrplR-----~~mQvVFQDPygSLsP 378 (534)
T COG4172 308 LTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGL----SRKEMRPLR-----RRMQVVFQDPYGSLSP 378 (534)
T ss_pred eEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccccc----Chhhhhhhh-----hhceEEEeCCCCCCCc
Confidence 345677789999999999999999999988654 223333333321 222222111 2235889888888877
Q ss_pred cccCCCCCCccccchHHHHHHHHHh---cCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceE
Q 002337 471 LVSNESLPNDQVGLSSEVASVIREF---TEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHE 547 (934)
Q Consensus 471 ~~~~~~~~~d~~~~~~ev~~~L~~l---l~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~e 547 (934)
... +.+++.+= .++..+. ...+.. |+ ..-..-++||+.+.||.||
T Consensus 379 Rmt--------------V~qII~EGL~vh~~~ls~----------~eR~~r-------v~-~aL~EVGLDp~~r~RYPhE 426 (534)
T COG4172 379 RMT--------------VGQIIEEGLRVHEPKLSA----------AERDQR-------VI-EALEEVGLDPATRNRYPHE 426 (534)
T ss_pred ccC--------------HHHHhhhhhhhcCCCCCH----------HHHHHH-------HH-HHHHHcCCChhHhhcCCcc
Confidence 321 11111111 1110000 000000 00 0012236899999999999
Q ss_pred EEcCCCCHHHHHHHHHHhccccccccCCCC
Q 002337 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTG 577 (934)
Q Consensus 548 I~i~~Pde~~R~~IL~~ll~~~~~l~~d~~ 577 (934)
++.| +.||..|.+.+.-++....+|..
T Consensus 427 FSGG---QRQRIAIARAliLkP~~i~LDEP 453 (534)
T COG4172 427 FSGG---QRQRIAIARALILKPELILLDEP 453 (534)
T ss_pred cCcc---hhhHHHHHHHHhcCCcEEEecCC
Confidence 9999 99999999998766665544543
No 459
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.72 E-value=0.00018 Score=81.13 Aligned_cols=144 Identities=22% Similarity=0.317 Sum_probs=85.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCc--------------------------------cccccccchHHHH-
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHN--------------------------------LMASSERKTSAAL- 445 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~--------------------------------L~~~~~g~~e~~L- 445 (934)
++|+-|+.|+||||++|++|..|..--..+.|.- +.+.-.+.++.++
T Consensus 40 gvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvv 119 (423)
T COG1239 40 GALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLV 119 (423)
T ss_pred eeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhc
Confidence 6999999999999999999999854333334420 1111112233211
Q ss_pred -----HHHHHHh-hc--------CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCC
Q 002337 446 -----AQAFNTA-QS--------YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYF 511 (934)
Q Consensus 446 -----~~~f~~A-~~--------~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~ 511 (934)
.++.+.- +. ..-+|+++||+..|.. .+..+|...++.-++ .-...|+.
T Consensus 120 GslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d----------------~lvd~LLd~aaeG~n--~vereGis 181 (423)
T COG1239 120 GSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD----------------HLVDALLDVAAEGVN--DVEREGIS 181 (423)
T ss_pred cccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH----------------HHHHHHHHHHHhCCc--eeeeCcee
Confidence 1111110 01 1246999999986653 334444333332110 00111111
Q ss_pred chhhhhhhhcccEEEEEecCCCCC-CChhhhcccceEEEcCCC-CHHHHHHHHHHhc
Q 002337 512 PVKEIEKICRQQVLLVAAADSSEG-LPPTIRRCFSHEISMGPL-TEQQRVEMLSQLL 566 (934)
Q Consensus 512 ~~~~~~~~~~~~ViVIatTn~~~~-Ld~aLrrrF~~eI~i~~P-de~~R~~IL~~ll 566 (934)
.....++++|||+|.-++ |-|.|+.||.-++....| +.++|.+|.+.-+
T Consensus 182 ------i~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~ 232 (423)
T COG1239 182 ------IRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRL 232 (423)
T ss_pred ------eccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHH
Confidence 112457899999987754 888999999999888775 4588999988754
No 460
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00022 Score=87.94 Aligned_cols=135 Identities=11% Similarity=0.174 Sum_probs=86.6
Q ss_pred CchHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccc------cc---cc
Q 002337 371 LQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLM------AS---SE 438 (934)
Q Consensus 371 ~~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~------~~---~~ 438 (934)
++.+.++.+...+.-.... ....++...++|.||.|+|||-||+++|..+ .-.++.|++++++ +. |.
T Consensus 566 gQ~eAv~aIa~AI~~sr~g-l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyv 644 (898)
T KOG1051|consen 566 GQDEAVAAIAAAIRRSRAG-LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYV 644 (898)
T ss_pred chHHHHHHHHHHHHhhhcc-cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccc
Confidence 3445555555555433321 1111467789999999999999999999998 3468888888532 22 23
Q ss_pred cchHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhh
Q 002337 439 RKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEK 518 (934)
Q Consensus 439 g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~ 518 (934)
|..+ ..++.+..+...-+|+++||||.-. ..+...|.++++. |.........
T Consensus 645 G~e~--gg~LteavrrrP~sVVLfdeIEkAh----------------~~v~n~llq~lD~----------GrltDs~Gr~ 696 (898)
T KOG1051|consen 645 GKEE--GGQLTEAVKRRPYSVVLFEEIEKAH----------------PDVLNILLQLLDR----------GRLTDSHGRE 696 (898)
T ss_pred cchh--HHHHHHHHhcCCceEEEEechhhcC----------------HHHHHHHHHHHhc----------CccccCCCcE
Confidence 3333 3356666666677999999999432 3556666666543 2222233344
Q ss_pred hhcccEEEEEecCCCC
Q 002337 519 ICRQQVLLVAAADSSE 534 (934)
Q Consensus 519 ~~~~~ViVIatTn~~~ 534 (934)
+.-.+++||.|+|...
T Consensus 697 Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 697 VDFKNAIFIMTSNVGS 712 (898)
T ss_pred eeccceEEEEecccch
Confidence 5678899999998754
No 461
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.70 E-value=0.00011 Score=77.60 Aligned_cols=161 Identities=21% Similarity=0.294 Sum_probs=81.5
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC---cEEEecCcc-c---------------------ccc-------------cc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL---NFLSVKGPE-L---------------------INM-------------YI 725 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~---~~i~v~~~~-l---------------------~~~-------------~~ 725 (934)
...++++||.|+|||++++.+.....- ..+++...+ . ... ..
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 578999999999999999999988732 112221100 0 000 00
Q ss_pred chhhhhhHHHHHHHHhCC-CcEEEeccccccc-cCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCC---C
Q 002337 726 GESEKNVRDIFQKARSAR-PCVIFFDELDSLA-PARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP---D 800 (934)
Q Consensus 726 Gese~~v~~lf~~A~~~~-p~vlfiDEid~l~-~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp---~ 800 (934)
......+..+++...... ..||+|||++.+. ..+. ....+..|...++.........+|+.+++.. +
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~ 171 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE--------DKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEE 171 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT--------THHHHHHHHHHHHH----TTEEEEEEESSHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc--------hHHHHHHHHHHHhhccccCCceEEEECCchHHHHH
Confidence 122344666666665543 4899999999998 2221 1345555555555433222334444444311 1
Q ss_pred --CCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCC-C-CcCCCHHHHHhhCCCCC
Q 002337 801 --LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFK-L-LEDVSLYSIAKKCPPNF 857 (934)
Q Consensus 801 --~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~-~-~~~~~l~~la~~~t~g~ 857 (934)
.-+..+. ||+.. ++++ |-+.++-.++++...+... + ..+.++..+... +.|+
T Consensus 172 ~~~~~~~~~--~~~~~-~~l~-~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~gG~ 227 (234)
T PF01637_consen 172 FLDDKSPLF--GRFSH-IELK-PLSKEEAREFLKELFKELIKLPFSDEDIEEIYSL-TGGN 227 (234)
T ss_dssp TT-TTSTTT--T---E-EEE-----HHHHHHHHHHHHHCC------HHHHHHHHHH-HTT-
T ss_pred hhcccCccc--cccce-EEEe-eCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHH-hCCC
Confidence 1112232 47877 8888 4778888888888776651 1 134455666665 3444
No 462
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.70 E-value=0.00014 Score=72.15 Aligned_cols=109 Identities=22% Similarity=0.280 Sum_probs=61.8
Q ss_pred ceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccc----------------------cccchh--hhhhHHHHHHH
Q 002337 687 VLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELIN----------------------MYIGES--EKNVRDIFQKA 739 (934)
Q Consensus 687 iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~----------------------~~~Ges--e~~v~~lf~~A 739 (934)
++++||||+|||++++.++... +.+++.++...... .+.+.. +...+..+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998776 45666665433221 011110 01112234555
Q ss_pred HhCCCcEEEeccccccccCCCC-CCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC
Q 002337 740 RSARPCVIFFDELDSLAPARGA-SGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 800 (934)
Q Consensus 740 ~~~~p~vlfiDEid~l~~~r~~-~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~ 800 (934)
....|.+++|||+..+...... .........+.+..++..+.. .++-+|.+++.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-----~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK-----GGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc-----CCceEEEEEecCC
Confidence 6678899999999988754211 001122334555555554432 2445555555543
No 463
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.69 E-value=0.00033 Score=82.89 Aligned_cols=139 Identities=16% Similarity=0.231 Sum_probs=78.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHH---------------hhcCCCE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNT---------------AQSYSPT 458 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~---------------A~~~~P~ 458 (934)
..+|++.|++||||+++|+++.... +.+|+.++|..+.... .+ ..+|.. .....++
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~---~~---~~lfg~~~g~~~~~~~~~~g~~~~a~~G 234 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL---IE---SELFGHEKGAFTGANTIRQGRFEQADGG 234 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH---HH---HHhcCCCCCCCCCCCcCCCCCeeECCCC
Confidence 3459999999999999999998876 4689999998753211 00 111110 1122357
Q ss_pred EEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC----
Q 002337 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE---- 534 (934)
Q Consensus 459 IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~---- 534 (934)
.+||||++.+.. .+...|.++++... ....++. ......+.+|+||+...
T Consensus 235 tl~l~~i~~l~~----------------~~q~~L~~~l~~~~---~~~~~~~-------~~~~~~~rii~~~~~~l~~~~ 288 (469)
T PRK10923 235 TLFLDEIGDMPL----------------DVQTRLLRVLADGQ---FYRVGGY-------APVKVDVRIIAATHQNLEQRV 288 (469)
T ss_pred EEEEeccccCCH----------------HHHHHHHHHHhcCc---EEeCCCC-------CeEEeeEEEEEeCCCCHHHHH
Confidence 899999998765 22223333332110 0000110 11134578888887542
Q ss_pred ---CCChhhhccc-ceEEEcCCCCH--HHHHHHHHHhcc
Q 002337 535 ---GLPPTIRRCF-SHEISMGPLTE--QQRVEMLSQLLQ 567 (934)
Q Consensus 535 ---~Ld~aLrrrF-~~eI~i~~Pde--~~R~~IL~~ll~ 567 (934)
.+.+.+..++ ...|.+|+..+ ++...++.++++
T Consensus 289 ~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~ 327 (469)
T PRK10923 289 QEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQ 327 (469)
T ss_pred HcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHH
Confidence 3556666666 34666666554 234445556554
No 464
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.69 E-value=0.00017 Score=84.68 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=46.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHH-HHH---------------HhhcCCCE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQ-AFN---------------TAQSYSPT 458 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~~e~~L~~-~f~---------------~A~~~~P~ 458 (934)
.+++++|++||||+++|+++.... +.+++.++|..+... .+.. +|. ......++
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~-------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN-------LLESELFGYEKGAFTGAVKQTLGKIEYAHGG 235 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChH-------HHHHHhcCCCCCCcCCCccCCCCceeECCCC
Confidence 459999999999999999998765 458999999865321 1111 111 01123468
Q ss_pred EEEEcchhhccc
Q 002337 459 ILLLRDFDVFRN 470 (934)
Q Consensus 459 IL~IDEID~L~~ 470 (934)
.|||||++.|..
T Consensus 236 tl~l~~i~~l~~ 247 (445)
T TIGR02915 236 TLFLDEIGDLPL 247 (445)
T ss_pred EEEEechhhCCH
Confidence 899999998865
No 465
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.68 E-value=3.5e-05 Score=85.66 Aligned_cols=59 Identities=37% Similarity=0.645 Sum_probs=43.5
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHHcC--CcEEEecCccccccccchhhhhhHHHHHHH
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECS--LNFLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~~~--~~~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+.-.++++||.||||||||.+|-++|+++| .||..++++++++.-+..+| .+.+.|.+|
T Consensus 46 ~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE-~L~qa~Rra 106 (398)
T PF06068_consen 46 GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTE-ALTQAFRRA 106 (398)
T ss_dssp T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHH-HHHHHHHCS
T ss_pred ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchH-HHHHHHHHh
Confidence 444578999999999999999999999997 79999999999988777666 344555554
No 466
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.68 E-value=0.0001 Score=82.73 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=46.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccc---hHHHHHHHHHHhhcCCCEEEEEcchhhc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERK---TSAALAQAFNTAQSYSPTILLLRDFDVF 468 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~---~e~~L~~~f~~A~~~~P~IL~IDEID~L 468 (934)
.+++|+||+|+|||+|+.++|+++ |..++.++..+++...... ........++... ..-+|+||++...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 679999999999999999999987 6778888877765532110 0111111233333 3468999999754
No 467
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.67 E-value=0.00033 Score=73.91 Aligned_cols=161 Identities=20% Similarity=0.285 Sum_probs=78.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC-c--EEEEecCcccc-----c------------------------------cc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGI-H--VVEYSCHNLMA-----S------------------------------SE 438 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~-~--~~~I~~~~L~~-----~------------------------------~~ 438 (934)
...++|+||.|+|||+|++.+...+.- . .+.+++..... . ..
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 345999999999999999999998832 1 11111110000 0 00
Q ss_pred cchHHHHHHHHHHhhcC-CCEEEEEcchhhcc-ccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhh
Q 002337 439 RKTSAALAQAFNTAQSY-SPTILLLRDFDVFR-NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEI 516 (934)
Q Consensus 439 g~~e~~L~~~f~~A~~~-~P~IL~IDEID~L~-~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~ 516 (934)
......+..+++..... ...+++|||++.+. ... ....+...+..+....
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~-----------~~~~~~~~l~~~~~~~----------------- 151 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE-----------EDKDFLKSLRSLLDSL----------------- 151 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT-----------TTHHHHHHHHHHHHH------------------
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc-----------chHHHHHHHHHHHhhc-----------------
Confidence 11233445555554433 34999999999887 211 0123333333332210
Q ss_pred hhhhcccEEEEEecCCC------CCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCC-CchHHHHHHHhhc
Q 002337 517 EKICRQQVLLVAAADSS------EGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDT-GSEEFVKDIIGQT 589 (934)
Q Consensus 517 ~~~~~~~ViVIatTn~~------~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~-~~~~~L~~la~~t 589 (934)
....++.+|.++... ..-...+..++.+ +.+++.+.++..+++...++.. . +. ..+..++.+...+
T Consensus 152 --~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~---~~~~~~~~~~~i~~~~ 224 (234)
T PF01637_consen 152 --LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-I---KLPFSDEDIEEIYSLT 224 (234)
T ss_dssp -----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC----------HHHHHHHHHHH
T ss_pred --cccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-h---cccCCHHHHHHHHHHh
Confidence 012333333333221 1122234456665 9999999999999999876554 1 11 2355567777777
Q ss_pred CCC
Q 002337 590 SGF 592 (934)
Q Consensus 590 ~Gf 592 (934)
.|.
T Consensus 225 gG~ 227 (234)
T PF01637_consen 225 GGN 227 (234)
T ss_dssp TT-
T ss_pred CCC
Confidence 764
No 468
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.67 E-value=0.0001 Score=85.24 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=51.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCcc---------ccccccchHHHHH----HHHHHhhcCCCE
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNL---------MASSERKTSAALA----QAFNTAQSYSPT 458 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L---------~~~~~g~~e~~L~----~~f~~A~~~~P~ 458 (934)
+...+|||.|.+||||..+|++|-+.. +-+|+.|||..+ ++...|...+..+ ..|+.|. .+
T Consensus 266 ~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~---gG 342 (560)
T COG3829 266 KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELAN---GG 342 (560)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeecc---CC
Confidence 344579999999999999999997765 568999999843 3332333222222 3455553 57
Q ss_pred EEEEcchhhccc
Q 002337 459 ILLLRDFDVFRN 470 (934)
Q Consensus 459 IL~IDEID~L~~ 470 (934)
-||||||..+..
T Consensus 343 TLFLDEIgempl 354 (560)
T COG3829 343 TLFLDEIGEMPL 354 (560)
T ss_pred eEEehhhccCCH
Confidence 899999987654
No 469
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.67 E-value=0.00011 Score=86.71 Aligned_cols=133 Identities=17% Similarity=0.182 Sum_probs=77.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcEE--EEecCcccc------------------ccccchHHH--------HH
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVV--EYSCHNLMA------------------SSERKTSAA--------LA 446 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~~~~--~I~~~~L~~------------------~~~g~~e~~--------L~ 446 (934)
..+.+++|+||||+|||++++.+++.+...-. .+.+..+.+ .+...+... -.
T Consensus 208 ~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~p 287 (506)
T PRK09862 208 AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGP 287 (506)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehh
Confidence 34567999999999999999999988742211 111111110 000111111 11
Q ss_pred HHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhh--hhhhhcccE
Q 002337 447 QAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKE--IEKICRQQV 524 (934)
Q Consensus 447 ~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~--~~~~~~~~V 524 (934)
..+..| ...++||||++.+.+ .+...|.+.++... ..... .......++
T Consensus 288 G~l~~A---~gGvLfLDEi~e~~~----------------~~~~~L~~~LE~g~----------v~I~r~g~~~~~pa~f 338 (506)
T PRK09862 288 GEISLA---HNGVLFLDELPEFER----------------RTLDALREPIESGQ----------IHLSRTRAKITYPARF 338 (506)
T ss_pred hHhhhc---cCCEEecCCchhCCH----------------HHHHHHHHHHHcCc----------EEEecCCcceeccCCE
Confidence 233333 358999999986543 45555555554211 00000 011124678
Q ss_pred EEEEecCCCC---------------------CCChhhhcccceEEEcCCCCHH
Q 002337 525 LLVAAADSSE---------------------GLPPTIRRCFSHEISMGPLTEQ 556 (934)
Q Consensus 525 iVIatTn~~~---------------------~Ld~aLrrrF~~eI~i~~Pde~ 556 (934)
.+|+|+|... .++..++.||+-.+.++.|+.+
T Consensus 339 ~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 339 QLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 9999998752 3677888899999999988765
No 470
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.66 E-value=0.00043 Score=78.19 Aligned_cols=137 Identities=24% Similarity=0.392 Sum_probs=89.7
Q ss_pred CcceecCCCCCcchHHHHHHHHHcCCcEEEecC--------c------------------------cccccccchhhhhh
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVKG--------P------------------------ELINMYIGESEKNV 732 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~--------~------------------------~l~~~~~Gese~~v 732 (934)
.|+|+-|+.|||||++++++|..+.---+...| + .++..=.|.++..+
T Consensus 39 ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrv 118 (423)
T COG1239 39 GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRL 118 (423)
T ss_pred ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhh
Confidence 689999999999999999999877322211111 0 11111123333311
Q ss_pred ------HHHHH----------HHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhcc---------CCcC-C
Q 002337 733 ------RDIFQ----------KARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEID---------GLND-S 786 (934)
Q Consensus 733 ------~~lf~----------~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ld---------g~~~-~ 786 (934)
.+..+ .|+ +...|+++||+..|. +.+++.||..+. |+.- .
T Consensus 119 vGslDi~ka~~~g~~af~PGlLa~-AnRGIlYvDEvnlL~-------------d~lvd~LLd~aaeG~n~vereGisi~h 184 (423)
T COG1239 119 VGSLDIEKALEEGPKAFQPGLLAR-ANRGILYVDEVNLLD-------------DHLVDALLDVAAEGVNDVEREGISIRH 184 (423)
T ss_pred ccccCHHHHHhcCccccCCcchhh-ccCCEEEEecccccc-------------HHHHHHHHHHHHhCCceeeeCceeecc
Confidence 11111 111 223599999998874 567777776544 3321 2
Q ss_pred CCCEEEEEEcCCCC-CCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhc
Q 002337 787 SQDLFIIGASNRPD-LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRK 837 (934)
Q Consensus 787 ~~~v~vI~aTNrp~-~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~ 837 (934)
..++++|||+|.-+ .|-|-|+- ||...|.+..|.+.+.|.+|.+.-...
T Consensus 185 pa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 185 PARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred CccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 35799999999654 57788888 999999999889999999998765543
No 471
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.00029 Score=78.58 Aligned_cols=131 Identities=15% Similarity=0.207 Sum_probs=84.8
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHcCCc---------------EEEecCcccccccc---ch--hhhhhHHHHHHHHh
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATECSLN---------------FLSVKGPELINMYI---GE--SEKNVRDIFQKARS 741 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~~~~---------------~i~v~~~~l~~~~~---Ge--se~~v~~lf~~A~~ 741 (934)
+.+..+||+||.|+||+++|+++|..+-.. +..-+-+|+.--.. |. +-..+|++-+.+..
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQE 102 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhh
Confidence 345689999999999999999998865210 00001123211111 11 12345665554432
Q ss_pred ----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeee
Q 002337 742 ----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLY 817 (934)
Q Consensus 742 ----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~ 817 (934)
+...|++||++|.+. ...-|.||+.++.- ..++++|..|+.++.|-|-+++ |.- .+.
T Consensus 103 ~~~~~~~kV~iI~~ae~m~-------------~~AaNaLLKtLEEP---p~~t~fiL~t~~~~~lLpTI~S--RCq-~~~ 163 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAMN-------------ESASNALLKTLEEP---APNCLFLLVTHNQKRLLPTIVS--RCQ-QWV 163 (319)
T ss_pred CcccCCceEEEecchhhhC-------------HHHHHHHHHHhcCC---CCCeEEEEEECChhhChHHHHh--cce-eEe
Confidence 334699999999985 23567788877754 3567777788889999999998 875 677
Q ss_pred ecCCCCHHHHHHHHH
Q 002337 818 VGVNSDVSYRERVLK 832 (934)
Q Consensus 818 v~~Pp~~~~r~~Il~ 832 (934)
|+. |+.+.-.+.+.
T Consensus 164 ~~~-~~~~~~~~~L~ 177 (319)
T PRK06090 164 VTP-PSTAQAMQWLK 177 (319)
T ss_pred CCC-CCHHHHHHHHH
Confidence 774 66666666654
No 472
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.63 E-value=0.00076 Score=80.76 Aligned_cols=81 Identities=28% Similarity=0.307 Sum_probs=51.8
Q ss_pred hhcCCCCCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCcccccc--------------c--------c----c-
Q 002337 677 FSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM--------------Y--------I----G- 726 (934)
Q Consensus 677 ~~~~~~~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~--------------~--------~----G- 726 (934)
+..|+.++..++++|+||+|||+++..++.+. +.+.++++..+-... + . .
T Consensus 266 l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~ 345 (509)
T PRK09302 266 LGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPES 345 (509)
T ss_pred hcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCccc
Confidence 34578888999999999999999998886543 556666553221100 0 0 0
Q ss_pred -hhhhhhHHHHHHHHhCCCcEEEecccccccc
Q 002337 727 -ESEKNVRDIFQKARSARPCVIFFDELDSLAP 757 (934)
Q Consensus 727 -ese~~v~~lf~~A~~~~p~vlfiDEid~l~~ 757 (934)
.-+..+..+.+......|.+++||-+..+..
T Consensus 346 ~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 346 YGLEDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 0112233444445566889999999988763
No 473
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.63 E-value=0.00052 Score=84.47 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=47.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCcccccc-----ccc----hHHHHHHHHHHhhcCCCEEEEEcc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASS-----ERK----TSAALAQAFNTAQSYSPTILLLRD 464 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~-----~g~----~e~~L~~~f~~A~~~~P~IL~IDE 464 (934)
..+|||+|++||||+++|+++.... +.+|+.|||..+.... .|. ........|+. ..++.|||||
T Consensus 348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~lde 424 (638)
T PRK11388 348 SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEK 424 (638)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcC
Confidence 3459999999999999999998875 3689999998653210 000 00000001222 2468999999
Q ss_pred hhhccc
Q 002337 465 FDVFRN 470 (934)
Q Consensus 465 ID~L~~ 470 (934)
|+.+..
T Consensus 425 i~~l~~ 430 (638)
T PRK11388 425 VEYLSP 430 (638)
T ss_pred hhhCCH
Confidence 998765
No 474
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00015 Score=82.80 Aligned_cols=25 Identities=48% Similarity=0.753 Sum_probs=21.9
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC 708 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~ 708 (934)
+.++|++||||||||++|+.+...+
T Consensus 198 gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 198 GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CCcEEEecCCCCchHHhhhhhcccC
Confidence 5799999999999999999886544
No 475
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.62 E-value=9e-05 Score=88.23 Aligned_cols=71 Identities=23% Similarity=0.280 Sum_probs=48.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH-----------hCCcEEEEecCccccccc-----c----chHH----HHHHHHHHh
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARR-----------LGIHVVEYSCHNLMASSE-----R----KTSA----ALAQAFNTA 452 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~e-----------lg~~~~~I~~~~L~~~~~-----g----~~e~----~L~~~f~~A 452 (934)
..+|||+|++||||+++|+++-.. -+.+|+.|||..+..... | ...+ .-...|+.|
T Consensus 242 ~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A 321 (538)
T PRK15424 242 SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 321 (538)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhcc
Confidence 346999999999999999999876 356899999986542110 0 0000 001234443
Q ss_pred hcCCCEEEEEcchhhccc
Q 002337 453 QSYSPTILLLRDFDVFRN 470 (934)
Q Consensus 453 ~~~~P~IL~IDEID~L~~ 470 (934)
..+.||||||+.|..
T Consensus 322 ---~gGTLfLdeI~~Lp~ 336 (538)
T PRK15424 322 ---HGGTLFLDEIGEMPL 336 (538)
T ss_pred ---CCCEEEEcChHhCCH
Confidence 357899999998765
No 476
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.62 E-value=0.00029 Score=69.82 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=47.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCcccccc----------------------c--cchHHHHHHHHHHh
Q 002337 400 VLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASS----------------------E--RKTSAALAQAFNTA 452 (934)
Q Consensus 400 VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~----------------------~--g~~e~~L~~~f~~A 452 (934)
++++||||+|||++++.++..+ +..++.+++....... . .......+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999887 4566666654322100 0 01111222334555
Q ss_pred hcCCCEEEEEcchhhccc
Q 002337 453 QSYSPTILLLRDFDVFRN 470 (934)
Q Consensus 453 ~~~~P~IL~IDEID~L~~ 470 (934)
....|.+++|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 667899999999998875
No 477
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.61 E-value=0.00015 Score=89.49 Aligned_cols=144 Identities=14% Similarity=0.173 Sum_probs=81.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC-------CcEEEEecCccccccccc-hHHHHH-HHHHHhhcCCCEEEEEcchhh
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLG-------IHVVEYSCHNLMASSERK-TSAALA-QAFNTAQSYSPTILLLRDFDV 467 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg-------~~~~~I~~~~L~~~~~g~-~e~~L~-~~f~~A~~~~P~IL~IDEID~ 467 (934)
..+|||+|.||||||++++++++... ..+..+.|.......... .+..++ ..+. ....++++|||++.
T Consensus 492 dihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLv---lAdgGtL~IDEidk 568 (915)
T PTZ00111 492 IINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVV---LANGGVCCIDELDK 568 (915)
T ss_pred CceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEE---EcCCCeEEecchhh
Confidence 35899999999999999999998642 222333332211100000 000000 0011 12357999999998
Q ss_pred ccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-------------
Q 002337 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE------------- 534 (934)
Q Consensus 468 L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~------------- 534 (934)
+.. .....|.+++++..- . -...|. ......++.||||+|..+
T Consensus 569 ms~----------------~~Q~aLlEaMEqqtI-s-I~KaGi------~~tL~ar~rVIAAaNP~~gryd~~~s~~eni 624 (915)
T PTZ00111 569 CHN----------------ESRLSLYEVMEQQTV-T-IAKAGI------VATLKAETAILASCNPINSRYNKNKAVIENI 624 (915)
T ss_pred CCH----------------HHHHHHHHHHhCCEE-E-EecCCc------ceecCCCeEEEEEcCCcccccCcccCccccc
Confidence 754 223334444443110 0 000110 111256789999998753
Q ss_pred CCChhhhcccceE-EEcCCCCHHHHHHHHHHhcc
Q 002337 535 GLPPTIRRCFSHE-ISMGPLTEQQRVEMLSQLLQ 567 (934)
Q Consensus 535 ~Ld~aLrrrF~~e-I~i~~Pde~~R~~IL~~ll~ 567 (934)
.|++.+++||+-. +....|+++.=..|.++.++
T Consensus 625 ~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 625 NISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred CCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 2789999999754 56777888777777776654
No 478
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.00027 Score=78.95 Aligned_cols=130 Identities=22% Similarity=0.273 Sum_probs=82.1
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCc-------------EEEecCcccccc--c---cch------hhhhhHHHHHH
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLN-------------FLSVKGPELINM--Y---IGE------SEKNVRDIFQK 738 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~-------------~i~v~~~~l~~~--~---~Ge------se~~v~~lf~~ 738 (934)
-+..+||+||+|+||+++|.++|..+-.. +..-+-+|+.-- . .|. .-..+|++.+.
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 35679999999999999999998765211 000011222111 0 111 12346666655
Q ss_pred HHh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcce
Q 002337 739 ARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDK 814 (934)
Q Consensus 739 A~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~ 814 (934)
+.. +.-.|++||++|.+. ....|.||+.|+.- ..++++|-+|+.++.|-|-+++ |..
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m~-------------~~AaNaLLKtLEEP---p~~~~fiL~~~~~~~lLpTIrS--RCq- 165 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAIN-------------RAACNALLKTLEEP---SPGRYLWLISAQPARLPATIRS--RCQ- 165 (319)
T ss_pred HhhCcccCCcEEEEeccHhhhC-------------HHHHHHHHHHhhCC---CCCCeEEEEECChhhCchHHHh--hhe-
Confidence 433 233699999999984 23567777777754 3456666678889999999998 875
Q ss_pred eeeecCCCCHHHHHHHHH
Q 002337 815 LLYVGVNSDVSYRERVLK 832 (934)
Q Consensus 815 ~i~v~~Pp~~~~r~~Il~ 832 (934)
.+.|+. |+.++-.+.|.
T Consensus 166 ~i~~~~-~~~~~~~~~L~ 182 (319)
T PRK08769 166 RLEFKL-PPAHEALAWLL 182 (319)
T ss_pred EeeCCC-cCHHHHHHHHH
Confidence 567774 55555555554
No 479
>PRK06851 hypothetical protein; Provisional
Probab=97.61 E-value=0.0012 Score=74.78 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=26.9
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecC
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKG 717 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~ 717 (934)
.+.++|.|+||||||++++.++.++ |..+...-|
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC 250 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC 250 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 4568999999999999999998776 555555544
No 480
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.60 E-value=3.4e-05 Score=86.48 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=29.1
Q ss_pred hhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCC
Q 002337 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTG 577 (934)
Q Consensus 540 LrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~ 577 (934)
+..|..++++.| ++||.++.+.+..++..+..|..
T Consensus 129 ~~~R~p~qLSGG---QqQRVALARAL~~~P~vLLLDEP 163 (352)
T COG3842 129 FADRKPHQLSGG---QQQRVALARALVPEPKVLLLDEP 163 (352)
T ss_pred hhhhChhhhChH---HHHHHHHHHHhhcCcchhhhcCc
Confidence 555778899999 99999999999988877766654
No 481
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.60 E-value=0.00019 Score=77.86 Aligned_cols=130 Identities=22% Similarity=0.362 Sum_probs=80.8
Q ss_pred cceecCCCCCcchHHHHHHHHHcCCc------EEEecCccccccccchhhhhhHHHHHHHHh-------CCCcEEEeccc
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECSLN------FLSVKGPELINMYIGESEKNVRDIFQKARS-------ARPCVIFFDEL 752 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~~~------~i~v~~~~l~~~~~Gese~~v~~lf~~A~~-------~~p~vlfiDEi 752 (934)
+.|+|||||||||....+.|..+-.+ +...+.++=.+. ...+.--..|..+++ ..+..+++||+
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEA 140 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEA 140 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCC---cchHHHHHHHHhhccceeccccCceeEEEecch
Confidence 99999999999999999999877442 122222221110 111222345555553 36789999999
Q ss_pred cccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHH
Q 002337 753 DSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLK 832 (934)
Q Consensus 753 d~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~ 832 (934)
|.+.. +.+.+.+|++.++ ..++.++...|.|..+-|+++. ||.+.=+=|+ +.+....++.
T Consensus 141 DaMT~------~AQnALRRviek~----------t~n~rF~ii~n~~~ki~pa~qs--Rctrfrf~pl--~~~~~~~r~s 200 (360)
T KOG0990|consen 141 DAMTR------DAQNALRRVIEKY----------TANTRFATISNPPQKIHPAQQS--RCTRFRFAPL--TMAQQTERQS 200 (360)
T ss_pred hHhhH------HHHHHHHHHHHHh----------ccceEEEEeccChhhcCchhhc--ccccCCCCCC--ChhhhhhHHH
Confidence 99863 2333445544443 2445566678999999999998 8765444443 4455555666
Q ss_pred HHHhcC
Q 002337 833 ALTRKF 838 (934)
Q Consensus 833 ~~~~~~ 838 (934)
.+.+.-
T Consensus 201 hi~e~e 206 (360)
T KOG0990|consen 201 HIRESE 206 (360)
T ss_pred HHHhcc
Confidence 555443
No 482
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.59 E-value=3.7e-05 Score=81.33 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=32.9
Q ss_pred hhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 383 LAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 383 l~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
++..+.++.| |-|.||+|||||||+|.+|+-....-++|..
T Consensus 22 i~L~v~~GEf-------vsilGpSGcGKSTLLriiAGL~~p~~G~V~~ 62 (248)
T COG1116 22 INLSVEKGEF-------VAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62 (248)
T ss_pred ceeEECCCCE-------EEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 4445556666 9999999999999999999998877766544
No 483
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.56 E-value=0.00033 Score=82.77 Aligned_cols=145 Identities=15% Similarity=0.165 Sum_probs=78.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccc-----cc----hHHHHHHHHHHhhcCCCEEEEEcch
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSE-----RK----TSAALAQAFNTAQSYSPTILLLRDF 465 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~-----g~----~e~~L~~~f~~A~~~~P~IL~IDEI 465 (934)
.++++.|.+||||+++++++.... +.+++.++|..+..... |. ................++.|||||+
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei 237 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEI 237 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEch
Confidence 469999999999999999998775 46899999986532110 00 0000000000011224678999999
Q ss_pred hhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-------CCCh
Q 002337 466 DVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-------GLPP 538 (934)
Q Consensus 466 D~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~-------~Ld~ 538 (934)
+.+.. ++...|.++++... ....++ .......+.+|++|+... .+.+
T Consensus 238 ~~l~~----------------~~q~~ll~~l~~~~---~~~~~~-------~~~~~~~~rii~~~~~~l~~~~~~~~f~~ 291 (463)
T TIGR01818 238 GDMPL----------------DAQTRLLRVLADGE---FYRVGG-------RTPIKVDVRIVAATHQNLEALVRQGKFRE 291 (463)
T ss_pred hhCCH----------------HHHHHHHHHHhcCc---EEECCC-------CceeeeeeEEEEeCCCCHHHHHHcCCcHH
Confidence 98765 22222333332110 000000 011133567888886542 3445
Q ss_pred hhhcccc-eEEEcCCCCH--HHHHHHHHHhccc
Q 002337 539 TIRRCFS-HEISMGPLTE--QQRVEMLSQLLQP 568 (934)
Q Consensus 539 aLrrrF~-~eI~i~~Pde--~~R~~IL~~ll~~ 568 (934)
.+..|+. ..|.+|+..+ ++...++.++++.
T Consensus 292 ~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~ 324 (463)
T TIGR01818 292 DLFHRLNVIRIHLPPLRERREDIPRLARHFLAL 324 (463)
T ss_pred HHHHHhCcceecCCCcccchhhHHHHHHHHHHH
Confidence 5555543 4777777663 4555666665543
No 484
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.56 E-value=5.4e-05 Score=86.01 Aligned_cols=141 Identities=18% Similarity=0.318 Sum_probs=79.8
Q ss_pred CCCCCcceecCCCCCcchHHHHHHHHHcCC------cEEEecCccc---cccccchhhhhhHHHHHHHHhCCCcEEEecc
Q 002337 681 LRKRSGVLLYGPPGTGKTLLAKAVATECSL------NFLSVKGPEL---INMYIGESEKNVRDIFQKARSARPCVIFFDE 751 (934)
Q Consensus 681 ~~~~~~iLl~GppGtGKT~lakalA~~~~~------~~i~v~~~~l---~~~~~Gese~~v~~lf~~A~~~~p~vlfiDE 751 (934)
..+++|+.||||+|+|||+|.-+....+.. +|...- .++ +..+.|+. ..+..+-+... ..-.+|.|||
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm-~~vh~~l~~~~~~~-~~l~~va~~l~-~~~~lLcfDE 135 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFM-LDVHSRLHQLRGQD-DPLPQVADELA-KESRLLCFDE 135 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHH-HHHHHHHHHHhCCC-ccHHHHHHHHH-hcCCEEEEee
Confidence 456899999999999999999999776643 111110 011 11111111 11223322222 2234999999
Q ss_pred ccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHH
Q 002337 752 LDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVL 831 (934)
Q Consensus 752 id~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il 831 (934)
+.-- |-+. ..++..|+..+= ..+|++|+|+|++ |.=|-+|.+.+..+.| -.+++
T Consensus 136 F~V~--------DiaD--Amil~rLf~~l~-----~~gvvlVaTSN~~----P~~Ly~~gl~r~~Flp-------~I~~l 189 (362)
T PF03969_consen 136 FQVT--------DIAD--AMILKRLFEALF-----KRGVVLVATSNRP----PEDLYKNGLQRERFLP-------FIDLL 189 (362)
T ss_pred eecc--------chhH--HHHHHHHHHHHH-----HCCCEEEecCCCC----hHHHcCCcccHHHHHH-------HHHHH
Confidence 8643 1111 124444444431 3578999999997 3333345565555554 24556
Q ss_pred HHHHhcCCCCcCCCHHHHH
Q 002337 832 KALTRKFKLLEDVSLYSIA 850 (934)
Q Consensus 832 ~~~~~~~~~~~~~~l~~la 850 (934)
+..+.-..+...+|+-...
T Consensus 190 ~~~~~vv~ld~~~DyR~~~ 208 (362)
T PF03969_consen 190 KRRCDVVELDGGVDYRRRG 208 (362)
T ss_pred HhceEEEEecCCCchhhhc
Confidence 6666667777777776544
No 485
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.55 E-value=0.00017 Score=84.54 Aligned_cols=143 Identities=20% Similarity=0.259 Sum_probs=81.8
Q ss_pred cccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcE--EEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhc
Q 002337 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHV--VEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVF 468 (934)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~--~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L 468 (934)
.|.+..+..+.|+|++||||||++|++++.+...- +.+++.+ ..-. ...++.. ....-++|.|=..+|
T Consensus 311 Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~~----~~~~~~~-----r~~~QmvFQdp~~SL 380 (539)
T COG1123 311 SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDLT----GGELRRL-----RRRIQMVFQDPYSSL 380 (539)
T ss_pred eeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-cccc----cchhhhh-----hhheEEEEeCccccc
Confidence 34456777899999999999999999999886544 3444444 1111 1112211 123458888887777
Q ss_pred cccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEE
Q 002337 469 RNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEI 548 (934)
Q Consensus 469 ~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI 548 (934)
.|.. .+...+.+-+...... . ..... .. |+..-..-++++.+..|+.+++
T Consensus 381 nPr~--------------tV~~~i~epL~~~~~~------~-~~~~~------~r---v~~ll~~VgL~~~~l~ryP~el 430 (539)
T COG1123 381 NPRM--------------TVGDILAEPLRIHGGG------S-GAERR------AR---VAELLELVGLPPEFLDRYPHEL 430 (539)
T ss_pred Cccc--------------cHHHHHHhHHhhhccc------c-hHHHH------HH---HHHHHHHcCCCHHHHhcCchhc
Confidence 6632 1111111111100000 0 00000 00 0000011246677889999999
Q ss_pred EcCCCCHHHHHHHHHHhccccccccCCC
Q 002337 549 SMGPLTEQQRVEMLSQLLQPVSELTSDT 576 (934)
Q Consensus 549 ~i~~Pde~~R~~IL~~ll~~~~~l~~d~ 576 (934)
+.| +.||..|.+.+..++..+..|.
T Consensus 431 SGG---QrQRvaIARALa~~P~lli~DE 455 (539)
T COG1123 431 SGG---QRQRVAIARALALEPKLLILDE 455 (539)
T ss_pred Ccc---hhHHHHHHHHHhcCCCEEEecC
Confidence 999 9999999999998887664443
No 486
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.52 E-value=9.7e-05 Score=80.07 Aligned_cols=130 Identities=17% Similarity=0.271 Sum_probs=84.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCc------EEEEecCccccccccchHHHHHHHHHHhhc-------CCCEEEEEcch
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIH------VVEYSCHNLMASSERKTSAALAQAFNTAQS-------YSPTILLLRDF 465 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~------~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~-------~~P~IL~IDEI 465 (934)
+.|+|||||+|||+...+.|..+-.+ +.+.+.++-.+ -.....-.+.|..++. .++-.+++||.
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rg---id~vr~qi~~fast~~~~~fst~~~fKlvILDEA 140 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRG---IDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEA 140 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccC---CcchHHHHHHHHhhccceeccccCceeEEEecch
Confidence 78999999999999999999998432 11222221110 0111111233444442 26789999999
Q ss_pred hhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccc
Q 002337 466 DVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFS 545 (934)
Q Consensus 466 D~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~ 545 (934)
|++.. .-...|++..++. ..++-++-.+|.+..+.|++++||.
T Consensus 141 DaMT~----------------~AQnALRRviek~---------------------t~n~rF~ii~n~~~ki~pa~qsRct 183 (360)
T KOG0990|consen 141 DAMTR----------------DAQNALRRVIEKY---------------------TANTRFATISNPPQKIHPAQQSRCT 183 (360)
T ss_pred hHhhH----------------HHHHHHHHHHHHh---------------------ccceEEEEeccChhhcCchhhcccc
Confidence 98765 1122333333221 3445566777899999999999986
Q ss_pred eEEEcCCCCHHHHHHHHHHhcccc
Q 002337 546 HEISMGPLTEQQRVEMLSQLLQPV 569 (934)
Q Consensus 546 ~eI~i~~Pde~~R~~IL~~ll~~~ 569 (934)
.+.+.+.+..+-...++++....
T Consensus 184 -rfrf~pl~~~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 184 -RFRFAPLTMAQQTERQSHIRESE 206 (360)
T ss_pred -cCCCCCCChhhhhhHHHHHHhcc
Confidence 78888888888888888877543
No 487
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.52 E-value=0.00045 Score=90.27 Aligned_cols=143 Identities=15% Similarity=0.267 Sum_probs=85.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcccc------ccc----cchHHHHHHHHHHhhcCCCEEEEEcchhh
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA------SSE----RKTSAALAQAFNTAQSYSPTILLLRDFDV 467 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~------~~~----g~~e~~L~~~f~~A~~~~P~IL~IDEID~ 467 (934)
..+||.||.|+|||.+++.+|..+|..++.++-++.+. .|. |...-+-..+...+ ..++++++|+++.
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Al--r~G~~~vlD~lnl 518 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQAL--RNGDWIVLDELNL 518 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHH--HhCCEEEeccccc
Confidence 35999999999999999999999999999998886443 111 11111112222333 3579999999974
Q ss_pred ccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCC------CChhhh
Q 002337 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG------LPPTIR 541 (934)
Q Consensus 468 L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~------Ld~aLr 541 (934)
-. ..+..+|+++++... .-+..+.......+...++.+|-|.+.. +..+++
T Consensus 519 a~----------------~dvL~aLnrllddnR-------el~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~ 575 (1856)
T KOG1808|consen 519 AP----------------HDVLEALNRLLDDNR-------ELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALR 575 (1856)
T ss_pred cc----------------hHHHHHHHhhhhhhc-------cccccccceeeccCcchhhhhhccCccccchhhhhhhccc
Confidence 32 356777777765311 1111111111222334455555555533 456677
Q ss_pred cccceEEEcCCCCHHHHHHHHHHhc
Q 002337 542 RCFSHEISMGPLTEQQRVEMLSQLL 566 (934)
Q Consensus 542 rrF~~eI~i~~Pde~~R~~IL~~ll 566 (934)
.||. ++++-.-.+++-..|+.+..
T Consensus 576 ~rf~-e~~f~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 576 NRFI-ELHFDDIGEEELEEILEHRC 599 (1856)
T ss_pred ccch-hhhhhhcCchhhhhhhcccc
Confidence 7775 55555555666666665544
No 488
>PRK06921 hypothetical protein; Provisional
Probab=97.52 E-value=0.00021 Score=78.11 Aligned_cols=67 Identities=21% Similarity=0.343 Sum_probs=43.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh----CCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchh
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL----GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFD 466 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el----g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID 466 (934)
+.+++|+|++|+|||+|+.++|+++ |..++.++..+++...... .......++.. ...-+|+|||++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~ 187 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLF 187 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEeccc
Confidence 4679999999999999999999986 4566666665544322111 11122222222 245799999994
No 489
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.49 E-value=0.00077 Score=71.82 Aligned_cols=156 Identities=19% Similarity=0.268 Sum_probs=94.7
Q ss_pred CcceecCCCCCcchHHHHHHHHHc-C--CcEEEecC-------------cccccc--------ccchhh-hhhHHHHHHH
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC-S--LNFLSVKG-------------PELINM--------YIGESE-KNVRDIFQKA 739 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~-~--~~~i~v~~-------------~~l~~~--------~~Gese-~~v~~lf~~A 739 (934)
.++++|||+|+||.|.+.++-+++ | ..=+.+.- +.+.+. -.|... .-+.++.+..
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 589999999999999999998775 2 11000000 001111 123332 2356666665
Q ss_pred HhCCC---------cEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCC
Q 002337 740 RSARP---------CVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPG 810 (934)
Q Consensus 740 ~~~~p---------~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpG 810 (934)
.+.+| .+++|-|+|.|.. |.+...+| .|+.+ ..++.+|...|....|=+++++
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~------dAQ~aLRR-------TMEkY---s~~~RlIl~cns~SriIepIrS-- 176 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTR------DAQHALRR-------TMEKY---SSNCRLILVCNSTSRIIEPIRS-- 176 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhH------HHHHHHHH-------HHHHH---hcCceEEEEecCcccchhHHhh--
Confidence 44333 5999999999952 22333444 44444 2456677777888888888887
Q ss_pred CcceeeeecCCCCHHHHHHHHHHHHhcCCCCcCCC-HHHHHhhCCCCCCHHHHHHH
Q 002337 811 RFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVS-LYSIAKKCPPNFTGADMYAL 865 (934)
Q Consensus 811 Rfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~-l~~la~~~t~g~sgaDl~~l 865 (934)
|. -.|.+|- |..++-..++...+++-.+....+ +..+|+. ++++++..
T Consensus 177 RC-l~iRvpa-ps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~k-----S~~nLRrA 225 (351)
T KOG2035|consen 177 RC-LFIRVPA-PSDEEITSVLSKVLKKEGLQLPKELLKRIAEK-----SNRNLRRA 225 (351)
T ss_pred he-eEEeCCC-CCHHHHHHHHHHHHHHhcccCcHHHHHHHHHH-----hcccHHHH
Confidence 64 3567776 566778888887777765543322 4566666 45666643
No 490
>PRK12377 putative replication protein; Provisional
Probab=97.49 E-value=0.00013 Score=78.66 Aligned_cols=69 Identities=17% Similarity=0.335 Sum_probs=46.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccch--HHHHHHHHHHhhcCCCEEEEEcchhhc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKT--SAALAQAFNTAQSYSPTILLLRDFDVF 468 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~~--e~~L~~~f~~A~~~~P~IL~IDEID~L 468 (934)
.+++|+||||||||+|+.++|+++ |..++.++..+++....... .......+... ....+|+|||+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 479999999999999999999998 56677777776665321100 00112233333 35679999999754
No 491
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.48 E-value=0.0011 Score=73.02 Aligned_cols=153 Identities=20% Similarity=0.287 Sum_probs=77.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH--hCCc---EEEEecCcc----------c---ccc-----ccchHHHHHHHHHHhhc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARR--LGIH---VVEYSCHNL----------M---ASS-----ERKTSAALAQAFNTAQS 454 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~e--lg~~---~~~I~~~~L----------~---~~~-----~g~~e~~L~~~f~~A~~ 454 (934)
.-|.|+|++|+|||+||+.+++. ...+ .+.++...- . ... .......+...+...-.
T Consensus 20 ~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 99 (287)
T PF00931_consen 20 RVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLK 99 (287)
T ss_dssp EEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHC
T ss_pred EEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhc
Confidence 45999999999999999999988 4332 222332210 0 000 01112223333333334
Q ss_pred CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC
Q 002337 455 YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE 534 (934)
Q Consensus 455 ~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~ 534 (934)
..++++++|+++... .+. .+.... .....+..+|.||...
T Consensus 100 ~~~~LlVlDdv~~~~-----------------~~~----~l~~~~------------------~~~~~~~kilvTTR~~- 139 (287)
T PF00931_consen 100 DKRCLLVLDDVWDEE-----------------DLE----ELREPL------------------PSFSSGSKILVTTRDR- 139 (287)
T ss_dssp CTSEEEEEEEE-SHH-----------------HH-----------------------------HCHHSS-EEEEEESCG-
T ss_pred cccceeeeeeecccc-----------------ccc----cccccc------------------cccccccccccccccc-
Confidence 459999999987321 111 111100 0012234455566442
Q ss_pred CCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCC
Q 002337 535 GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGF 592 (934)
Q Consensus 535 ~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gf 592 (934)
.+....... ...+.++..++++-.++++....... ...........++++..+.|.
T Consensus 140 ~v~~~~~~~-~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~gl 195 (287)
T PF00931_consen 140 SVAGSLGGT-DKVIELEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGL 195 (287)
T ss_dssp GGGTTHHSC-EEEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-
T ss_pred ccccccccc-cccccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence 222122111 45899999999999999998865433 111122244567888888764
No 492
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.48 E-value=0.00017 Score=76.14 Aligned_cols=72 Identities=21% Similarity=0.247 Sum_probs=42.7
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcc-c---------cccccchhhhhhHHHHHHHH--hCCCcEEEecc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPE-L---------INMYIGESEKNVRDIFQKAR--SARPCVIFFDE 751 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~-l---------~~~~~Gese~~v~~lf~~A~--~~~p~vlfiDE 751 (934)
+..+|+||+||+|||++|+.++.. .-++..++.. . ...-...+...+.+.+..+. ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 567999999999999999999732 2344443321 0 00001112223333333333 24468999999
Q ss_pred cccccc
Q 002337 752 LDSLAP 757 (934)
Q Consensus 752 id~l~~ 757 (934)
++.+..
T Consensus 90 I~~l~~ 95 (220)
T TIGR01618 90 ISALQN 95 (220)
T ss_pred HHHHHH
Confidence 998865
No 493
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.48 E-value=0.00013 Score=78.46 Aligned_cols=69 Identities=19% Similarity=0.392 Sum_probs=48.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccc---hHHHHHHHHHHhhcCCCEEEEEcchhhc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERK---TSAALAQAFNTAQSYSPTILLLRDFDVF 468 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~---~e~~L~~~f~~A~~~~P~IL~IDEID~L 468 (934)
.+++|+|++|||||+|+.++|.++ |..+..++..+++...... .......+++... ...+|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 479999999999999999999998 6778888877766532211 1112223344333 4679999999854
No 494
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.48 E-value=0.00051 Score=82.71 Aligned_cols=124 Identities=13% Similarity=0.098 Sum_probs=80.1
Q ss_pred CcceecCCCCCcchHHHHHHHHHcCC--cEEEecCccccccccchh--hhhh--------HHHHHHHHhCCCcEEEeccc
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECSL--NFLSVKGPELINMYIGES--EKNV--------RDIFQKARSARPCVIFFDEL 752 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~~--~~i~v~~~~l~~~~~Ges--e~~v--------~~lf~~A~~~~p~vlfiDEi 752 (934)
.|+++.|+.||||++++++++..+.. +|..+--+---...+|.- ++.+ .-++..|. ..|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 68999999999999999999998754 676554332223334432 1111 11222222 359999999
Q ss_pred cccccCCCCCCCCchhHHHHHHhhhhhccCC---------c-CCCCCEEEEEEcCCC---CCCChhhhCCCCcceeeeec
Q 002337 753 DSLAPARGASGDSGGVMDRVVSQMLAEIDGL---------N-DSSQDLFIIGASNRP---DLIDPALLRPGRFDKLLYVG 819 (934)
Q Consensus 753 d~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~---------~-~~~~~v~vI~aTNrp---~~lD~allrpGRfd~~i~v~ 819 (934)
..+- ..+++.|+.-|+.- . ....++++||+-|.. ..|.++++- ||+..+.++
T Consensus 103 n~~~-------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~ 167 (584)
T PRK13406 103 ERLE-------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLD 167 (584)
T ss_pred ccCC-------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcC
Confidence 7764 45778888777632 1 012457788764322 247889998 999999999
Q ss_pred CCCCHHH
Q 002337 820 VNSDVSY 826 (934)
Q Consensus 820 ~Pp~~~~ 826 (934)
.|+..+.
T Consensus 168 ~~~~~~~ 174 (584)
T PRK13406 168 GLALRDA 174 (584)
T ss_pred CCChHHh
Confidence 7554443
No 495
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.46 E-value=0.00026 Score=80.95 Aligned_cols=70 Identities=23% Similarity=0.326 Sum_probs=49.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCcccc---------ccccchHHHHH---HHHHHhhcCCCEEEEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMA---------SSERKTSAALA---QAFNTAQSYSPTILLL 462 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~---------~~~g~~e~~L~---~~f~~A~~~~P~IL~I 462 (934)
.+|||.|.+||||..+||+|-... .-+|+.+||..+.. ...|...+.+. .-|+.| .++-+|+
T Consensus 247 ~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElA---dGGTLFL 323 (550)
T COG3604 247 STVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELA---DGGTLFL 323 (550)
T ss_pred CeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeec---CCCeEec
Confidence 359999999999999999998775 46899999985443 22233222222 223433 3579999
Q ss_pred cchhhccc
Q 002337 463 RDFDVFRN 470 (934)
Q Consensus 463 DEID~L~~ 470 (934)
|||..|..
T Consensus 324 DEIGelPL 331 (550)
T COG3604 324 DEIGELPL 331 (550)
T ss_pred hhhccCCH
Confidence 99987754
No 496
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.44 E-value=6.3e-05 Score=83.85 Aligned_cols=32 Identities=34% Similarity=0.409 Sum_probs=27.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
-+.|.||+||||||++|.||+.....-++|..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i 62 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 39999999999999999999998776665543
No 497
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.41 E-value=0.00017 Score=80.25 Aligned_cols=70 Identities=16% Similarity=0.292 Sum_probs=49.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccc-hHHHHHHHHHHhhcCCCEEEEEcchhh
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERK-TSAALAQAFNTAQSYSPTILLLRDFDV 467 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~-~e~~L~~~f~~A~~~~P~IL~IDEID~ 467 (934)
.+.|++|+||+|||||.|+.++|+++ |..+..+..++++...... ....+...++... ..-+|+|||+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCC
Confidence 45789999999999999999999998 7777878877765432211 1112333444433 457999999974
No 498
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.40 E-value=0.00029 Score=73.98 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=55.3
Q ss_pred HhhcCCCCCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCcccccc--------cc---------------chhh
Q 002337 676 LFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM--------YI---------------GESE 729 (934)
Q Consensus 676 ~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~--------~~---------------Gese 729 (934)
++..|+.++.-++++||||+|||+++..++... +...++++..++... +. .+..
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~ 83 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQG 83 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHH
Confidence 345688888999999999999999999887543 556777777542100 00 0111
Q ss_pred hhhHHHHHHHHhCCCcEEEecccccccc
Q 002337 730 KNVRDIFQKARSARPCVIFFDELDSLAP 757 (934)
Q Consensus 730 ~~v~~lf~~A~~~~p~vlfiDEid~l~~ 757 (934)
..+..+.+.+....|++|+||-+..+..
T Consensus 84 ~~~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 84 VAIQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 1244444445556789999999998863
No 499
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.40 E-value=0.0015 Score=77.07 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=46.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccc-----cchH-------HHHHHHHHHhhcCCCEEEEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSE-----RKTS-------AALAQAFNTAQSYSPTILLL 462 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~-----g~~e-------~~L~~~f~~A~~~~P~IL~I 462 (934)
.+++++|++||||+++++++.... +.+++.++|..+..... |... ..-...+. ....+.|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFE---RANEGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceE---ECCCCEEEE
Confidence 469999999999999999997764 46899999986532110 0000 00001122 123578999
Q ss_pred cchhhccc
Q 002337 463 RDFDVFRN 470 (934)
Q Consensus 463 DEID~L~~ 470 (934)
||++.+..
T Consensus 244 d~i~~l~~ 251 (457)
T PRK11361 244 DEIGEMPL 251 (457)
T ss_pred echhhCCH
Confidence 99998865
No 500
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.40 E-value=0.0002 Score=77.71 Aligned_cols=68 Identities=21% Similarity=0.328 Sum_probs=49.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCcccccccc-----chHHHHHHHHHHhhcCCCEEEEEcchhh
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSER-----KTSAALAQAFNTAQSYSPTILLLRDFDV 467 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g-----~~e~~L~~~f~~A~~~~P~IL~IDEID~ 467 (934)
.+.+++|+||||+|||.|+-++++++ |..+..+..++++..... ..+..+... . ...-+|+|||+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l--~~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---L--KKVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---h--hcCCEEEEecccC
Confidence 45679999999999999999999988 788888988887764321 222222221 2 2356999999875
Q ss_pred c
Q 002337 468 F 468 (934)
Q Consensus 468 L 468 (934)
.
T Consensus 179 ~ 179 (254)
T COG1484 179 E 179 (254)
T ss_pred c
Confidence 4
Done!