Query 002337
Match_columns 934
No_of_seqs 768 out of 4488
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 22:12:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 9E-105 3E-109 967.9 44.2 715 66-932 10-765 (806)
2 1ypw_A Transitional endoplasmi 100.0 3.8E-77 1.3E-81 738.0 33.1 715 65-931 9-764 (806)
3 4b4t_J 26S protease regulatory 100.0 1.4E-49 4.7E-54 448.0 18.5 238 668-925 165-404 (405)
4 4b4t_I 26S protease regulatory 100.0 2.9E-48 9.8E-53 437.8 13.6 233 668-920 199-433 (437)
5 4b4t_L 26S protease subunit RP 100.0 8.6E-47 2.9E-51 431.8 18.9 237 668-924 198-436 (437)
6 4b4t_H 26S protease regulatory 100.0 9.2E-47 3.1E-51 429.5 18.6 238 668-925 226-466 (467)
7 4b4t_M 26S protease regulatory 100.0 1.1E-46 3.8E-51 430.5 18.4 229 668-916 198-428 (434)
8 4b4t_K 26S protease regulatory 100.0 1.8E-46 6.2E-51 428.6 15.2 236 668-922 189-427 (428)
9 3hu3_A Transitional endoplasmi 100.0 5.1E-39 1.7E-43 375.8 36.5 446 65-659 9-462 (489)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.3E-39 8E-44 360.7 25.7 274 642-931 13-320 (322)
11 3cf2_A TER ATPase, transitiona 100.0 2.4E-40 8.4E-45 402.7 16.4 256 669-929 222-489 (806)
12 3cf0_A Transitional endoplasmi 100.0 5.4E-39 1.9E-43 354.5 20.8 275 643-930 17-301 (301)
13 3eie_A Vacuolar protein sortin 100.0 5.1E-38 1.7E-42 350.0 17.6 275 642-932 19-320 (322)
14 2x8a_A Nuclear valosin-contain 100.0 8.1E-38 2.8E-42 340.4 18.5 241 669-919 28-273 (274)
15 2qp9_X Vacuolar protein sortin 100.0 1.7E-37 5.7E-42 350.4 21.1 273 643-931 53-352 (355)
16 2zan_A Vacuolar protein sortin 100.0 5.6E-37 1.9E-41 356.0 20.4 274 642-931 135-442 (444)
17 4b4t_J 26S protease regulatory 100.0 2.4E-35 8.3E-40 332.1 25.2 239 366-658 148-391 (405)
18 4b4t_I 26S protease regulatory 100.0 1.6E-34 5.4E-39 326.1 25.2 239 366-658 182-425 (437)
19 4b4t_M 26S protease regulatory 100.0 2.2E-34 7.6E-39 329.0 24.4 242 366-661 181-427 (434)
20 4b4t_H 26S protease regulatory 100.0 1.2E-33 4E-38 321.9 23.4 238 366-658 209-452 (467)
21 4b4t_L 26S protease subunit RP 100.0 2.1E-33 7.2E-38 321.3 24.2 239 366-658 181-424 (437)
22 4b4t_K 26S protease regulatory 100.0 1.4E-32 5E-37 313.9 26.2 237 366-656 172-414 (428)
23 3hu3_A Transitional endoplasmi 100.0 6.9E-33 2.4E-37 324.0 17.3 251 669-924 222-484 (489)
24 3d8b_A Fidgetin-like protein 1 100.0 1.2E-32 4.2E-37 310.9 17.8 269 643-932 86-356 (357)
25 2ce7_A Cell division protein F 100.0 1.2E-31 4.2E-36 311.1 22.5 219 674-912 38-258 (476)
26 3b9p_A CG5977-PA, isoform A; A 100.0 4.3E-32 1.5E-36 297.9 16.0 269 642-931 22-293 (297)
27 1r6b_X CLPA protein; AAA+, N-t 100.0 5.5E-30 1.9E-34 316.8 31.5 418 396-881 206-723 (758)
28 1lv7_A FTSH; alpha/beta domain 100.0 5E-30 1.7E-34 275.8 24.6 214 680-913 41-255 (257)
29 3pxi_A Negative regulator of g 100.0 3.1E-29 1.1E-33 309.9 35.0 419 397-882 201-733 (758)
30 3h4m_A Proteasome-activating n 100.0 3.7E-30 1.3E-34 280.7 22.0 260 642-931 18-281 (285)
31 3vfd_A Spastin; ATPase, microt 100.0 1.4E-30 4.7E-35 297.5 19.3 270 642-932 116-387 (389)
32 2dhr_A FTSH; AAA+ protein, hex 100.0 1.2E-29 4.2E-34 295.9 21.1 215 679-913 59-274 (499)
33 1qvr_A CLPB protein; coiled co 100.0 3.3E-28 1.1E-32 304.1 27.9 436 397-882 191-828 (854)
34 2r62_A Cell division protease 100.0 3.7E-30 1.3E-34 278.4 7.7 227 673-918 32-261 (268)
35 1ixz_A ATP-dependent metallopr 100.0 2.1E-28 7.2E-33 262.7 20.1 209 679-907 44-253 (254)
36 2qz4_A Paraplegin; AAA+, SPG7, 100.0 3.3E-29 1.1E-33 269.2 13.9 215 679-913 34-252 (262)
37 1iy2_A ATP-dependent metallopr 99.9 4.5E-27 1.5E-31 256.0 21.4 209 679-907 68-277 (278)
38 1xwi_A SKD1 protein; VPS4B, AA 99.9 1.3E-25 4.4E-30 249.8 25.3 219 366-613 12-235 (322)
39 3t15_A Ribulose bisphosphate c 99.9 1.4E-26 4.7E-31 254.4 14.0 177 680-864 32-222 (293)
40 1ypw_A Transitional endoplasmi 99.9 3.9E-26 1.3E-30 282.5 18.8 240 669-913 222-462 (806)
41 3eie_A Vacuolar protein sortin 99.9 2.3E-25 8E-30 247.8 22.2 220 366-613 18-240 (322)
42 2x8a_A Nuclear valosin-contain 99.9 6.8E-25 2.3E-29 238.5 21.7 250 366-659 10-267 (274)
43 2qp9_X Vacuolar protein sortin 99.9 1E-24 3.5E-29 245.8 22.1 219 366-612 51-272 (355)
44 3cf0_A Transitional endoplasmi 99.9 2.3E-24 7.9E-29 237.5 18.3 262 366-658 15-283 (301)
45 2zan_A Vacuolar protein sortin 99.9 6.3E-24 2.2E-28 246.3 17.3 219 366-612 134-356 (444)
46 2ce7_A Cell division protein F 99.9 5.1E-23 1.8E-27 238.8 23.3 219 366-611 16-239 (476)
47 3h4m_A Proteasome-activating n 99.9 8.5E-23 2.9E-27 222.4 22.6 241 366-661 17-263 (285)
48 1lv7_A FTSH; alpha/beta domain 99.9 2E-22 6.7E-27 216.5 24.3 237 366-657 12-253 (257)
49 2qz4_A Paraplegin; AAA+, SPG7, 99.9 8.6E-23 2.9E-27 219.1 21.1 221 366-610 6-231 (262)
50 3d8b_A Fidgetin-like protein 1 99.9 5.4E-22 1.8E-26 223.9 23.8 249 367-659 85-337 (357)
51 3b9p_A CG5977-PA, isoform A; A 99.9 7.3E-22 2.5E-26 216.5 21.9 249 366-657 21-273 (297)
52 3vfd_A Spastin; ATPase, microt 99.9 1.4E-21 4.9E-26 222.9 23.8 250 366-658 115-367 (389)
53 2dhr_A FTSH; AAA+ protein, hex 99.9 2E-21 6.9E-26 226.7 20.1 218 366-610 31-253 (499)
54 2c9o_A RUVB-like 1; hexameric 99.9 1.2E-22 4.2E-27 236.5 8.3 370 367-910 38-437 (456)
55 2c9o_A RUVB-like 1; hexameric 99.9 1.5E-24 5.2E-29 252.6 -9.2 177 680-868 59-262 (456)
56 1ixz_A ATP-dependent metallopr 99.9 1E-20 3.6E-25 202.7 19.9 218 367-611 17-239 (254)
57 3tiw_A Transitional endoplasmi 99.8 1.4E-20 4.9E-25 190.5 17.4 176 65-349 9-185 (187)
58 1iy2_A ATP-dependent metallopr 99.8 6.9E-20 2.4E-24 199.2 20.7 217 367-610 41-262 (278)
59 2r62_A Cell division protease 99.8 4E-22 1.4E-26 215.2 0.5 217 367-608 12-233 (268)
60 3qwz_A Transitional endoplasmi 99.8 5.8E-20 2E-24 189.3 15.8 177 65-350 12-189 (211)
61 3t15_A Ribulose bisphosphate c 99.8 8.6E-20 3E-24 200.2 13.4 186 393-600 32-223 (293)
62 3syl_A Protein CBBX; photosynt 99.8 7.4E-19 2.5E-23 193.4 10.8 207 682-906 65-290 (309)
63 3cmw_A Protein RECA, recombina 99.7 1.2E-19 4.2E-24 234.3 0.5 119 680-800 1078-1219(1706)
64 1g41_A Heat shock protein HSLU 99.7 7E-17 2.4E-21 184.9 22.6 356 396-922 49-442 (444)
65 1d2n_A N-ethylmaleimide-sensit 99.7 6.7E-18 2.3E-22 182.8 10.0 201 681-913 61-267 (272)
66 3uk6_A RUVB-like 2; hexameric 99.7 4.7E-17 1.6E-21 183.5 14.5 207 680-924 66-345 (368)
67 3m6a_A ATP-dependent protease 99.7 2.4E-17 8.1E-22 195.7 12.2 204 683-911 107-342 (543)
68 1g41_A Heat shock protein HSLU 99.7 3.2E-18 1.1E-22 196.0 4.0 136 683-831 49-188 (444)
69 3hws_A ATP-dependent CLP prote 99.7 3.4E-17 1.2E-21 184.9 11.5 212 683-907 50-346 (363)
70 1ofh_A ATP-dependent HSL prote 99.7 1.5E-16 5.3E-21 174.3 14.1 214 683-911 49-300 (310)
71 4akg_A Glutathione S-transfera 99.7 5.6E-15 1.9E-19 198.9 27.5 140 684-838 1267-1434(2695)
72 3pfi_A Holliday junction ATP-d 99.6 1.4E-14 4.9E-19 161.3 21.6 187 683-912 54-256 (338)
73 3syl_A Protein CBBX; photosynt 99.6 4.1E-15 1.4E-19 163.4 15.2 182 395-611 65-265 (309)
74 4akg_A Glutathione S-transfera 99.6 2E-14 6.8E-19 193.6 23.3 326 397-753 1267-1677(2695)
75 1hqc_A RUVB; extended AAA-ATPa 99.6 3.1E-14 1.1E-18 157.3 18.1 207 683-931 37-262 (324)
76 3te6_A Regulatory protein SIR3 99.6 1.7E-15 5.8E-20 166.8 6.8 200 682-909 43-314 (318)
77 1d2n_A N-ethylmaleimide-sensit 99.5 3.4E-14 1.2E-18 153.6 14.6 176 395-603 62-244 (272)
78 1r6b_X CLPA protein; AAA+, N-t 99.5 2.3E-14 7.8E-19 177.1 14.8 223 682-930 205-457 (758)
79 2z4s_A Chromosomal replication 99.5 2.3E-14 7.8E-19 165.8 13.1 193 684-912 130-334 (440)
80 2v1u_A Cell division control p 99.5 1.2E-13 4.1E-18 155.7 18.5 198 683-911 43-277 (387)
81 1um8_A ATP-dependent CLP prote 99.5 1.7E-14 5.7E-19 163.5 11.4 214 682-909 70-364 (376)
82 4fcw_A Chaperone protein CLPB; 99.5 1.7E-14 5.7E-19 158.6 10.8 182 684-882 47-287 (311)
83 3uk6_A RUVB-like 2; hexameric 99.5 1.2E-13 4.2E-18 155.4 18.2 173 396-610 69-312 (368)
84 3m6a_A ATP-dependent protease 99.5 9.8E-14 3.4E-18 164.6 15.9 189 396-604 107-311 (543)
85 1l8q_A Chromosomal replication 99.5 8.9E-14 3.1E-18 154.2 14.6 170 683-872 36-214 (324)
86 1jbk_A CLPB protein; beta barr 99.5 2.7E-14 9.1E-19 143.9 7.3 134 684-831 43-194 (195)
87 3pvs_A Replication-associated 99.5 1.6E-13 5.6E-18 158.7 14.1 194 685-924 51-258 (447)
88 3pxg_A Negative regulator of g 99.5 1.4E-13 4.7E-18 160.6 13.1 163 682-873 199-385 (468)
89 1ofh_A ATP-dependent HSL prote 99.5 1.5E-13 5.2E-18 150.4 12.0 198 395-608 48-273 (310)
90 3aji_B S6C, proteasome (prosom 99.4 9.8E-14 3.4E-18 122.6 7.6 82 823-923 2-83 (83)
91 3pxi_A Negative regulator of g 99.4 2.3E-13 7.8E-18 168.1 13.8 163 682-873 199-385 (758)
92 2qby_B CDC6 homolog 3, cell di 99.4 6.4E-13 2.2E-17 150.1 16.4 187 684-911 45-271 (384)
93 1g8p_A Magnesium-chelatase 38 99.4 4.7E-13 1.6E-17 149.4 14.9 194 684-910 45-322 (350)
94 3bos_A Putative DNA replicatio 99.4 3.7E-13 1.3E-17 141.3 13.0 181 683-908 51-241 (242)
95 3pxg_A Negative regulator of g 99.4 5.2E-13 1.8E-17 155.7 15.0 165 397-608 201-385 (468)
96 1in4_A RUVB, holliday junction 99.4 6.4E-12 2.2E-16 140.1 23.2 208 684-931 51-274 (334)
97 1qvr_A CLPB protein; coiled co 99.4 1.5E-13 5.2E-18 171.7 11.1 178 682-873 189-392 (854)
98 3pfi_A Holliday junction ATP-d 99.4 1.7E-12 5.8E-17 144.5 17.8 204 368-608 31-234 (338)
99 1jbk_A CLPB protein; beta barr 99.4 2.1E-13 7.1E-18 137.3 9.5 134 397-562 43-194 (195)
100 3hws_A ATP-dependent CLP prote 99.4 5.1E-13 1.7E-17 150.6 12.9 212 396-611 50-325 (363)
101 3vlf_B 26S protease regulatory 99.4 3.7E-13 1.3E-17 120.2 9.0 86 823-926 2-88 (88)
102 2chg_A Replication factor C sm 99.4 1.7E-12 5.8E-17 133.8 14.6 174 685-908 39-224 (226)
103 2p65_A Hypothetical protein PF 99.4 1.6E-13 5.5E-18 138.0 6.7 126 684-821 43-186 (187)
104 1cz4_A VCP-like ATPase; double 99.4 3.8E-12 1.3E-16 129.2 15.7 161 82-350 8-174 (185)
105 2r44_A Uncharacterized protein 99.4 1.5E-12 5E-17 144.8 13.7 135 684-837 46-200 (331)
106 2krk_A 26S protease regulatory 99.4 5.5E-13 1.9E-17 118.4 8.0 75 821-913 10-84 (86)
107 2qby_A CDC6 homolog 1, cell di 99.4 8.4E-13 2.9E-17 148.5 11.6 177 683-875 44-254 (386)
108 1fnn_A CDC6P, cell division co 99.4 5.9E-12 2E-16 142.2 17.9 173 686-875 46-256 (389)
109 4fcw_A Chaperone protein CLPB; 99.4 3.3E-12 1.1E-16 140.2 14.6 188 395-611 45-281 (311)
110 1sxj_A Activator 1 95 kDa subu 99.4 1.9E-12 6.6E-17 152.8 13.0 164 683-870 76-253 (516)
111 3cmu_A Protein RECA, recombina 99.4 6.6E-12 2.3E-16 164.2 19.0 119 679-799 1422-1563(2050)
112 1njg_A DNA polymerase III subu 99.4 2.8E-12 9.7E-17 133.7 12.4 180 685-907 46-248 (250)
113 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 1.6E-12 5.4E-17 152.0 11.5 176 684-876 41-269 (500)
114 2z4s_A Chromosomal replication 99.4 3.7E-12 1.3E-16 147.3 14.4 174 397-608 130-313 (440)
115 1l8q_A Chromosomal replication 99.3 5.7E-12 1.9E-16 139.6 15.2 168 397-605 37-212 (324)
116 3te6_A Regulatory protein SIR3 99.3 8.4E-12 2.9E-16 137.4 16.3 154 374-568 27-213 (318)
117 2v1u_A Cell division control p 99.3 5E-11 1.7E-15 134.2 23.1 197 374-608 26-256 (387)
118 1hqc_A RUVB; extended AAA-ATPa 99.3 1E-11 3.6E-16 137.0 16.2 178 396-604 37-214 (324)
119 3u61_B DNA polymerase accessor 99.3 1.4E-12 4.7E-17 144.5 7.8 126 684-835 48-178 (324)
120 3bos_A Putative DNA replicatio 99.3 2.5E-11 8.4E-16 127.3 17.0 164 397-608 52-224 (242)
121 3u61_B DNA polymerase accessor 99.3 1.7E-11 5.9E-16 135.6 15.9 170 373-595 32-211 (324)
122 2p65_A Hypothetical protein PF 99.3 4.1E-12 1.4E-16 127.6 9.9 127 397-554 43-187 (187)
123 3cmw_A Protein RECA, recombina 99.3 4.5E-11 1.5E-15 155.1 21.1 115 680-795 1427-1564(1706)
124 2chg_A Replication factor C sm 99.3 6.2E-11 2.1E-15 122.0 18.0 155 399-602 40-205 (226)
125 3pvs_A Replication-associated 99.3 1.6E-11 5.4E-16 142.1 14.9 160 398-605 51-219 (447)
126 3kw6_A 26S protease regulatory 99.3 6.8E-12 2.3E-16 109.3 8.8 74 821-912 2-75 (78)
127 3f9v_A Minichromosome maintena 99.3 2.2E-12 7.6E-17 154.4 7.3 138 682-838 325-493 (595)
128 2dzn_B 26S protease regulatory 99.3 1.6E-12 5.4E-17 114.5 4.4 81 825-923 1-82 (82)
129 3vkg_A Dynein heavy chain, cyt 99.3 1.6E-10 5.5E-15 156.7 24.6 323 397-753 1304-1714(3245)
130 1njg_A DNA polymerase III subu 99.3 1E-10 3.5E-15 121.8 18.0 158 398-604 46-231 (250)
131 1sxj_D Activator 1 41 kDa subu 99.2 6.4E-11 2.2E-15 132.1 15.6 161 685-873 59-242 (353)
132 2qby_B CDC6 homolog 3, cell di 99.2 1.5E-10 5E-15 130.7 18.7 194 366-605 20-249 (384)
133 2r44_A Uncharacterized protein 99.2 3.9E-11 1.3E-15 133.2 13.3 140 398-568 47-200 (331)
134 1ojl_A Transcriptional regulat 99.2 1.8E-11 6.2E-16 134.6 10.0 170 683-873 24-235 (304)
135 1um8_A ATP-dependent CLP prote 99.2 1.7E-10 5.7E-15 130.6 17.5 212 396-611 71-342 (376)
136 2chq_A Replication factor C sm 99.2 1E-10 3.5E-15 128.3 15.3 155 686-868 40-206 (319)
137 2bjv_A PSP operon transcriptio 99.2 2.5E-11 8.7E-16 130.4 10.0 170 684-873 29-240 (265)
138 1in4_A RUVB, holliday junction 99.2 5.4E-10 1.9E-14 124.4 20.9 180 397-608 51-230 (334)
139 2qby_A CDC6 homolog 1, cell di 99.2 3.8E-10 1.3E-14 126.8 19.7 200 368-608 22-252 (386)
140 1sxj_A Activator 1 95 kDa subu 99.2 1.2E-10 4.2E-15 137.3 15.8 163 396-602 76-250 (516)
141 1fnn_A CDC6P, cell division co 99.2 9.4E-10 3.2E-14 124.1 21.7 176 399-609 46-255 (389)
142 1g8p_A Magnesium-chelatase 38 99.2 2.7E-10 9.2E-15 126.9 17.0 44 522-565 186-231 (350)
143 3n70_A Transport activator; si 99.2 1.1E-11 3.7E-16 121.1 4.7 103 683-814 23-128 (145)
144 1sxj_B Activator 1 37 kDa subu 99.2 1.3E-10 4.3E-15 127.8 13.1 156 686-869 44-212 (323)
145 3cmu_A Protein RECA, recombina 99.1 3.2E-11 1.1E-15 157.9 7.4 130 666-796 710-866 (2050)
146 3co5_A Putative two-component 99.1 1.3E-11 4.5E-16 120.2 2.5 90 684-799 27-116 (143)
147 1jr3_A DNA polymerase III subu 99.1 6.9E-10 2.3E-14 124.6 14.6 159 684-870 38-225 (373)
148 2chq_A Replication factor C sm 99.1 6.1E-10 2.1E-14 122.0 13.1 149 399-591 40-195 (319)
149 1sxj_D Activator 1 41 kDa subu 99.1 1E-09 3.5E-14 122.2 15.1 157 399-604 60-238 (353)
150 1sxj_B Activator 1 37 kDa subu 99.1 1.1E-09 3.8E-14 120.2 14.6 146 400-593 45-202 (323)
151 1iqp_A RFCS; clamp loader, ext 99.0 7.1E-10 2.4E-14 122.0 12.6 157 685-869 47-215 (327)
152 3nbx_X ATPase RAVA; AAA+ ATPas 99.0 3.4E-10 1.1E-14 132.3 10.1 142 397-566 41-196 (500)
153 1iqp_A RFCS; clamp loader, ext 99.0 2.6E-09 8.9E-14 117.4 16.0 159 399-602 48-213 (327)
154 1jr3_A DNA polymerase III subu 99.0 2.8E-09 9.6E-14 119.6 16.4 159 397-604 38-224 (373)
155 3k1j_A LON protease, ATP-depen 99.0 4.5E-10 1.5E-14 135.0 10.2 119 788-926 251-390 (604)
156 2bjv_A PSP operon transcriptio 99.0 1E-09 3.6E-14 117.7 11.9 180 398-606 30-238 (265)
157 1w5s_A Origin recognition comp 99.0 4.2E-09 1.4E-13 119.7 17.6 180 684-875 50-275 (412)
158 1a5t_A Delta prime, HOLB; zinc 99.0 1.3E-08 4.4E-13 113.3 20.0 164 370-591 5-196 (334)
159 1sxj_E Activator 1 40 kDa subu 99.0 3.6E-09 1.2E-13 118.2 15.4 159 400-604 39-240 (354)
160 1sxj_E Activator 1 40 kDa subu 99.0 3.3E-09 1.1E-13 118.5 14.7 158 686-870 38-241 (354)
161 1a5t_A Delta prime, HOLB; zinc 99.0 3.7E-09 1.3E-13 117.7 14.0 142 684-852 24-193 (334)
162 3vkg_A Dynein heavy chain, cyt 98.9 5E-09 1.7E-13 142.4 17.2 142 398-563 605-750 (3245)
163 3n70_A Transport activator; si 98.9 1.1E-09 3.9E-14 106.6 7.4 64 397-470 24-90 (145)
164 1ojl_A Transcriptional regulat 98.9 1.7E-09 5.9E-14 118.8 8.6 179 397-605 25-232 (304)
165 3f9v_A Minichromosome maintena 98.9 1.1E-09 3.9E-14 130.9 7.7 144 397-568 327-492 (595)
166 3co5_A Putative two-component 98.9 7E-10 2.4E-14 108.0 4.1 63 397-470 27-89 (143)
167 1sxj_C Activator 1 40 kDa subu 98.9 5.1E-09 1.7E-13 116.7 11.2 126 686-837 48-184 (340)
168 1sxj_C Activator 1 40 kDa subu 98.8 3.3E-08 1.1E-12 110.1 15.1 144 400-591 49-203 (340)
169 1ny5_A Transcriptional regulat 98.8 3.1E-09 1.1E-13 120.7 6.2 170 684-873 160-370 (387)
170 2gno_A DNA polymerase III, gam 98.8 2.3E-08 7.7E-13 109.9 11.8 125 684-835 18-152 (305)
171 2gno_A DNA polymerase III, gam 98.7 6E-08 2.1E-12 106.5 13.0 124 398-566 19-152 (305)
172 1wlf_A PEX1, peroxisome biogen 98.7 1.3E-07 4.3E-12 95.4 12.7 152 92-348 23-175 (179)
173 2kjq_A DNAA-related protein; s 98.7 1.9E-08 6.4E-13 98.7 6.3 107 683-820 35-147 (149)
174 3dzd_A Transcriptional regulat 98.6 2.4E-08 8.1E-13 112.7 7.2 170 684-872 152-360 (368)
175 2vhj_A Ntpase P4, P4; non- hyd 98.6 8.3E-09 2.8E-13 112.8 2.4 123 679-806 118-242 (331)
176 1w5s_A Origin recognition comp 98.6 2.4E-07 8.4E-12 105.1 14.6 181 397-608 50-273 (412)
177 2kjq_A DNAA-related protein; s 98.6 1.2E-07 4.2E-12 92.8 9.4 59 396-469 35-96 (149)
178 3k1j_A LON protease, ATP-depen 98.6 1.5E-07 5.2E-12 113.0 12.0 88 521-609 250-356 (604)
179 3ec2_A DNA replication protein 98.5 4.7E-08 1.6E-12 98.4 5.3 104 682-800 36-144 (180)
180 1svm_A Large T antigen; AAA+ f 98.5 6.4E-08 2.2E-12 109.1 6.7 120 678-819 163-283 (377)
181 2krk_A 26S protease regulatory 98.5 1.4E-07 4.8E-12 83.4 6.9 76 550-658 8-83 (86)
182 3kw6_A 26S protease regulatory 98.5 2.2E-07 7.5E-12 80.6 7.5 75 551-658 1-75 (78)
183 2r2a_A Uncharacterized protein 98.5 3.6E-07 1.2E-11 93.9 9.9 124 685-820 6-152 (199)
184 2w58_A DNAI, primosome compone 98.4 3.1E-07 1.1E-11 94.0 6.3 71 684-756 54-128 (202)
185 3ec2_A DNA replication protein 98.3 3.1E-07 1.1E-11 92.3 4.2 72 395-468 36-112 (180)
186 2vhj_A Ntpase P4, P4; non- hyd 98.3 8.2E-07 2.8E-11 97.1 7.4 74 395-470 121-196 (331)
187 3vlf_B 26S protease regulatory 98.3 1.1E-06 3.9E-11 78.0 6.4 72 554-658 2-73 (88)
188 2qgz_A Helicase loader, putati 98.2 8.1E-07 2.8E-11 97.6 4.7 71 684-756 152-227 (308)
189 2w58_A DNAI, primosome compone 98.2 1.5E-06 5.2E-11 88.8 5.8 70 398-469 55-128 (202)
190 2fna_A Conserved hypothetical 98.1 1.8E-05 6.2E-10 87.3 14.2 166 685-867 31-251 (357)
191 2qen_A Walker-type ATPase; unk 98.1 3.1E-05 1E-09 85.3 15.9 166 398-601 32-246 (350)
192 2fna_A Conserved hypothetical 98.1 1.8E-05 6.2E-10 87.3 13.5 162 399-601 32-250 (357)
193 3aji_B S6C, proteasome (prosom 98.1 2.5E-06 8.4E-11 74.8 5.1 74 553-659 1-74 (83)
194 3f8t_A Predicted ATPase involv 98.1 9.6E-06 3.3E-10 92.6 10.8 115 684-818 239-377 (506)
195 2r2a_A Uncharacterized protein 98.0 5E-06 1.7E-10 85.4 5.7 124 399-554 7-154 (199)
196 3dzd_A Transcriptional regulat 97.9 5.2E-05 1.8E-09 85.3 13.2 142 398-568 153-318 (368)
197 1ny5_A Transcriptional regulat 97.9 1.2E-05 4.1E-10 91.2 7.9 143 397-568 160-327 (387)
198 2qen_A Walker-type ATPase; unk 97.9 0.00011 3.7E-09 80.9 14.6 166 685-867 32-247 (350)
199 1ye8_A Protein THEP1, hypothet 97.8 7.8E-05 2.7E-09 75.0 11.4 28 399-426 2-29 (178)
200 2qgz_A Helicase loader, putati 97.8 8.4E-06 2.9E-10 89.5 4.2 70 397-468 152-226 (308)
201 3ozx_A RNAse L inhibitor; ATP 97.8 1.3E-05 4.6E-10 94.4 5.7 28 681-708 291-318 (538)
202 3bk7_A ABC transporter ATP-bin 97.8 6.6E-06 2.3E-10 98.4 3.0 57 541-602 222-293 (607)
203 3j16_B RLI1P; ribosome recycli 97.8 1.4E-05 4.9E-10 95.4 5.8 33 395-427 101-133 (608)
204 1tue_A Replication protein E1; 97.8 1.4E-05 4.7E-10 81.9 4.5 33 681-713 55-87 (212)
205 1ye8_A Protein THEP1, hypothet 97.7 0.00012 3.9E-09 73.8 9.6 27 686-712 2-28 (178)
206 3f8t_A Predicted ATPase involv 97.7 0.00014 4.9E-09 83.0 11.2 126 399-557 241-385 (506)
207 2dzn_B 26S protease regulatory 97.7 1.4E-05 4.9E-10 69.8 2.3 69 556-657 1-69 (82)
208 2iw3_A Elongation factor 3A; a 97.6 4.7E-05 1.6E-09 94.7 7.3 218 385-706 449-721 (986)
209 1tue_A Replication protein E1; 97.6 5.6E-05 1.9E-09 77.3 6.5 29 397-425 58-86 (212)
210 3ux8_A Excinuclease ABC, A sub 97.5 2.1E-05 7.2E-10 95.6 1.2 27 679-705 343-369 (670)
211 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00067 2.3E-08 69.9 10.9 36 395-430 21-59 (235)
212 1u0j_A DNA replication protein 97.4 0.00022 7.5E-09 76.1 6.9 29 682-710 102-130 (267)
213 2cvh_A DNA repair and recombin 97.3 0.0005 1.7E-08 70.5 9.2 41 679-719 15-55 (220)
214 1n0w_A DNA repair protein RAD5 97.3 0.00022 7.4E-09 74.4 6.3 81 678-758 18-134 (243)
215 3rlf_A Maltose/maltodextrin im 97.3 2.6E-05 8.8E-10 87.7 -1.6 37 394-430 26-62 (381)
216 2cvh_A DNA repair and recombin 97.3 0.0013 4.4E-08 67.4 11.4 39 394-432 17-55 (220)
217 1u0j_A DNA replication protein 97.3 0.00066 2.3E-08 72.4 9.2 33 397-430 104-136 (267)
218 3hr8_A Protein RECA; alpha and 97.3 0.00056 1.9E-08 76.3 9.0 106 679-784 56-184 (356)
219 1xp8_A RECA protein, recombina 97.2 0.00056 1.9E-08 76.7 8.9 116 679-795 69-207 (366)
220 3fvq_A Fe(3+) IONS import ATP- 97.2 5E-05 1.7E-09 84.7 -0.5 36 394-429 27-62 (359)
221 2ehv_A Hypothetical protein PH 97.2 0.00036 1.2E-08 73.0 5.9 133 677-820 23-207 (251)
222 2zr9_A Protein RECA, recombina 97.1 0.00032 1.1E-08 78.2 5.5 79 679-757 56-153 (349)
223 2yyz_A Sugar ABC transporter, 97.1 5.5E-05 1.9E-09 84.5 -0.7 38 393-430 25-62 (359)
224 1v43_A Sugar-binding transport 97.1 6.5E-05 2.2E-09 84.4 -0.2 37 394-430 34-70 (372)
225 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0012 4.1E-08 68.0 9.3 37 680-716 19-58 (235)
226 2ehv_A Hypothetical protein PH 97.1 0.0023 7.9E-08 66.8 11.6 37 394-430 27-67 (251)
227 3vaa_A Shikimate kinase, SK; s 97.1 0.00029 9.9E-09 71.7 4.4 35 394-428 22-56 (199)
228 1z47_A CYSA, putative ABC-tran 97.1 4.6E-05 1.6E-09 85.0 -2.0 37 394-430 38-74 (355)
229 4a74_A DNA repair and recombin 97.1 0.00033 1.1E-08 72.3 4.3 42 678-719 19-69 (231)
230 4g1u_C Hemin import ATP-bindin 97.0 6.9E-05 2.4E-09 80.4 -1.4 38 391-428 31-68 (266)
231 1qhx_A CPT, protein (chloramph 96.9 0.00068 2.3E-08 67.2 5.3 33 398-430 4-36 (178)
232 3trf_A Shikimate kinase, SK; a 96.9 0.00052 1.8E-08 68.6 4.2 32 397-428 5-36 (185)
233 1jr3_D DNA polymerase III, del 96.9 0.0044 1.5E-07 68.5 11.8 151 684-868 18-184 (343)
234 2yuj_A Ubiquitin fusion degrad 96.9 0.0069 2.4E-07 60.6 11.9 140 93-341 40-182 (190)
235 1kag_A SKI, shikimate kinase I 96.8 0.00085 2.9E-08 66.1 4.9 30 397-426 4-33 (173)
236 2z43_A DNA repair and recombin 96.8 0.00085 2.9E-08 73.9 5.2 80 678-757 101-217 (324)
237 3io5_A Recombination and repai 96.8 0.0016 5.6E-08 70.9 7.2 104 679-783 24-157 (333)
238 3hr8_A Protein RECA; alpha and 96.8 0.0036 1.2E-07 69.7 10.2 76 395-470 59-153 (356)
239 1u94_A RECA protein, recombina 96.8 0.0011 3.8E-08 74.0 6.0 79 679-757 58-155 (356)
240 1zp6_A Hypothetical protein AT 96.8 0.00064 2.2E-08 68.2 3.5 37 395-431 7-43 (191)
241 1qhx_A CPT, protein (chloramph 96.8 0.0014 4.7E-08 65.0 5.8 34 684-717 3-36 (178)
242 1pzn_A RAD51, DNA repair and r 96.7 0.0011 3.8E-08 73.8 5.6 44 676-719 123-175 (349)
243 3lda_A DNA repair protein RAD5 96.7 0.0015 5.1E-08 74.0 6.7 82 677-758 171-288 (400)
244 1y63_A LMAJ004144AAA protein; 96.7 0.00077 2.6E-08 67.7 3.9 33 395-427 8-41 (184)
245 1n0w_A DNA repair protein RAD5 96.7 0.0024 8.3E-08 66.3 7.8 77 394-470 21-133 (243)
246 2orw_A Thymidine kinase; TMTK, 96.7 0.0007 2.4E-08 68.3 3.4 69 685-755 4-88 (184)
247 3kb2_A SPBC2 prophage-derived 96.7 0.0011 3.6E-08 65.2 4.4 31 399-429 3-33 (173)
248 2p5t_B PEZT; postsegregational 96.7 0.0028 9.5E-08 67.1 7.7 40 394-433 29-68 (253)
249 3vaa_A Shikimate kinase, SK; s 96.7 0.00081 2.8E-08 68.4 3.4 37 680-716 21-57 (199)
250 1gvn_B Zeta; postsegregational 96.6 0.0017 5.7E-08 70.4 5.9 57 374-431 11-67 (287)
251 2eyu_A Twitching motility prot 96.6 0.00071 2.4E-08 72.3 2.7 69 397-465 25-107 (261)
252 1v5w_A DMC1, meiotic recombina 96.6 0.0018 6.2E-08 71.9 5.9 80 678-757 116-233 (343)
253 4a74_A DNA repair and recombin 96.6 0.0036 1.2E-07 64.4 7.8 28 394-421 22-49 (231)
254 2rhm_A Putative kinase; P-loop 96.6 0.0016 5.6E-08 65.1 5.1 32 396-427 4-35 (193)
255 1zuh_A Shikimate kinase; alpha 96.6 0.0012 4.3E-08 64.8 4.1 31 398-428 8-38 (168)
256 1svm_A Large T antigen; AAA+ f 96.6 0.0017 5.9E-08 73.0 5.7 66 393-470 165-230 (377)
257 1via_A Shikimate kinase; struc 96.6 0.0015 5.1E-08 64.7 4.6 29 399-427 6-34 (175)
258 2iut_A DNA translocase FTSK; n 96.6 0.016 5.5E-07 68.1 13.9 74 458-563 345-420 (574)
259 3iij_A Coilin-interacting nucl 96.6 0.0014 4.8E-08 65.2 4.3 31 397-427 11-41 (180)
260 4eun_A Thermoresistant glucoki 96.5 0.0018 6.3E-08 65.8 5.1 35 396-432 28-62 (200)
261 2jv2_A Putative uncharacterize 96.5 0.0052 1.8E-07 53.4 7.2 51 274-348 29-79 (83)
262 1vma_A Cell division protein F 96.5 0.0075 2.6E-07 65.8 10.3 91 375-466 83-196 (306)
263 2iyv_A Shikimate kinase, SK; t 96.5 0.0013 4.5E-08 65.6 3.9 30 399-428 4-33 (184)
264 1xp8_A RECA protein, recombina 96.5 0.0086 2.9E-07 67.0 10.8 76 395-470 72-166 (366)
265 2zr9_A Protein RECA, recombina 96.5 0.005 1.7E-07 68.5 8.7 76 395-470 59-153 (349)
266 4gp7_A Metallophosphoesterase; 96.5 0.0042 1.5E-07 61.5 7.3 21 395-415 7-27 (171)
267 3trf_A Shikimate kinase, SK; a 96.5 0.0013 4.4E-08 65.7 3.3 33 684-716 5-37 (185)
268 1knq_A Gluconate kinase; ALFA/ 96.5 0.0022 7.5E-08 63.4 5.0 30 397-426 8-37 (175)
269 1aky_A Adenylate kinase; ATP:A 96.5 0.0022 7.5E-08 66.1 5.1 32 396-427 3-34 (220)
270 3jvv_A Twitching mobility prot 96.4 0.0032 1.1E-07 70.3 6.7 68 399-466 125-206 (356)
271 2cdn_A Adenylate kinase; phosp 96.4 0.002 6.8E-08 65.4 4.6 33 396-428 19-51 (201)
272 3cm0_A Adenylate kinase; ATP-b 96.4 0.0018 6.3E-08 64.5 4.2 29 398-426 5-33 (186)
273 2i3b_A HCR-ntpase, human cance 96.4 0.0048 1.6E-07 62.5 7.2 24 685-708 2-25 (189)
274 1htw_A HI0065; nucleotide-bind 96.4 0.0027 9.1E-08 62.5 5.0 25 397-421 33-57 (158)
275 1zc1_A Ubiquitin fusion degrad 96.4 0.018 6E-07 58.5 11.0 138 95-340 47-189 (208)
276 2ze6_A Isopentenyl transferase 96.4 0.0021 7.3E-08 68.1 4.5 32 399-430 3-34 (253)
277 2eyu_A Twitching motility prot 96.3 0.0023 7.8E-08 68.3 4.6 72 681-753 22-108 (261)
278 3t61_A Gluconokinase; PSI-biol 96.3 0.0028 9.6E-08 64.3 5.0 30 398-427 19-48 (202)
279 2c95_A Adenylate kinase 1; tra 96.3 0.0021 7.3E-08 64.5 4.1 31 398-428 10-40 (196)
280 3b5x_A Lipid A export ATP-bind 96.3 0.002 6.7E-08 76.9 4.3 40 389-428 361-400 (582)
281 3jvv_A Twitching mobility prot 96.3 0.0042 1.4E-07 69.3 6.7 72 682-753 121-206 (356)
282 2dr3_A UPF0273 protein PH0284; 96.3 0.0095 3.3E-07 61.8 9.0 41 677-717 16-59 (247)
283 3uie_A Adenylyl-sulfate kinase 96.3 0.0046 1.6E-07 62.7 6.4 36 397-432 25-63 (200)
284 1e6c_A Shikimate kinase; phosp 96.3 0.0027 9.4E-08 62.3 4.6 29 399-427 4-32 (173)
285 2rhm_A Putative kinase; P-loop 96.3 0.0017 5.7E-08 65.1 3.0 35 681-715 2-36 (193)
286 3io5_A Recombination and repai 96.3 0.016 5.5E-07 63.1 10.8 75 395-470 27-125 (333)
287 1tev_A UMP-CMP kinase; ploop, 96.3 0.003 1E-07 63.1 4.9 29 398-426 4-32 (196)
288 3lw7_A Adenylate kinase relate 96.3 0.002 6.9E-08 62.9 3.5 29 399-428 3-31 (179)
289 2ius_A DNA translocase FTSK; n 96.3 0.035 1.2E-06 64.7 14.3 43 522-564 331-375 (512)
290 4gp7_A Metallophosphoesterase; 96.3 0.0042 1.4E-07 61.6 5.7 23 681-703 6-28 (171)
291 1zp6_A Hypothetical protein AT 96.2 0.0015 5.3E-08 65.4 2.5 40 681-720 6-45 (191)
292 2iut_A DNA translocase FTSK; n 96.2 0.024 8.3E-07 66.5 12.9 73 745-831 345-419 (574)
293 3iij_A Coilin-interacting nucl 96.2 0.0026 9E-08 63.2 3.9 35 682-716 9-43 (180)
294 2r8r_A Sensor protein; KDPD, P 96.2 0.049 1.7E-06 56.5 13.5 33 684-716 6-41 (228)
295 2b8t_A Thymidine kinase; deoxy 96.2 0.024 8.2E-07 58.9 11.2 71 398-469 13-102 (223)
296 2pt5_A Shikimate kinase, SK; a 96.2 0.0028 9.5E-08 62.1 3.8 29 399-427 2-30 (168)
297 2pez_A Bifunctional 3'-phospho 96.2 0.0046 1.6E-07 61.4 5.5 35 396-430 4-41 (179)
298 1kht_A Adenylate kinase; phosp 96.2 0.0031 1.1E-07 62.8 4.3 25 398-422 4-28 (192)
299 2bwj_A Adenylate kinase 5; pho 96.2 0.0027 9.2E-08 63.9 3.8 30 398-427 13-42 (199)
300 1jr3_D DNA polymerase III, del 96.2 0.046 1.6E-06 60.2 14.1 143 398-591 19-176 (343)
301 2vli_A Antibiotic resistance p 96.2 0.0025 8.5E-08 63.3 3.4 29 398-426 6-34 (183)
302 3fb4_A Adenylate kinase; psych 96.1 0.0027 9.4E-08 65.0 3.8 30 399-428 2-31 (216)
303 2p5t_B PEZT; postsegregational 96.1 0.0055 1.9E-07 64.8 6.2 39 682-720 30-68 (253)
304 1cke_A CK, MSSA, protein (cyti 96.1 0.0039 1.3E-07 64.2 4.9 29 398-426 6-34 (227)
305 1ukz_A Uridylate kinase; trans 96.1 0.0035 1.2E-07 63.5 4.4 32 397-428 15-46 (203)
306 3dl0_A Adenylate kinase; phosp 96.1 0.0027 9.2E-08 65.1 3.5 30 399-428 2-31 (216)
307 1kag_A SKI, shikimate kinase I 96.1 0.0032 1.1E-07 61.9 4.0 31 684-714 4-34 (173)
308 2dr3_A UPF0273 protein PH0284; 96.1 0.02 7E-07 59.3 10.3 38 394-431 20-60 (247)
309 1ly1_A Polynucleotide kinase; 96.1 0.0028 9.7E-08 62.5 3.5 26 398-423 3-29 (181)
310 2ewv_A Twitching motility prot 96.1 0.0021 7.3E-08 72.2 2.7 72 395-466 134-219 (372)
311 3lda_A DNA repair protein RAD5 96.1 0.011 3.9E-07 66.8 8.7 77 394-470 175-287 (400)
312 1qf9_A UMP/CMP kinase, protein 96.1 0.0045 1.5E-07 61.7 4.8 31 397-427 6-36 (194)
313 3tif_A Uncharacterized ABC tra 96.0 0.0021 7.2E-08 67.5 2.4 39 392-430 26-64 (235)
314 1y63_A LMAJ004144AAA protein; 96.0 0.0029 9.8E-08 63.4 3.3 34 683-716 9-43 (184)
315 1zd8_A GTP:AMP phosphotransfer 96.0 0.003 1E-07 65.4 3.6 30 398-427 8-37 (227)
316 1ak2_A Adenylate kinase isoenz 96.0 0.005 1.7E-07 64.1 5.2 31 397-427 16-46 (233)
317 3b9q_A Chloroplast SRP recepto 96.0 0.0065 2.2E-07 66.2 6.3 31 391-421 94-124 (302)
318 3tlx_A Adenylate kinase 2; str 96.0 0.0038 1.3E-07 65.7 4.3 32 396-427 28-59 (243)
319 3kb2_A SPBC2 prophage-derived 96.0 0.0033 1.1E-07 61.5 3.5 31 686-716 3-33 (173)
320 1via_A Shikimate kinase; struc 96.0 0.0031 1.1E-07 62.4 3.3 30 686-715 6-35 (175)
321 3c8u_A Fructokinase; YP_612366 96.0 0.005 1.7E-07 63.0 4.9 36 395-430 20-58 (208)
322 3umf_A Adenylate kinase; rossm 96.0 0.0053 1.8E-07 63.6 5.1 38 395-434 27-64 (217)
323 2orw_A Thymidine kinase; TMTK, 96.0 0.0054 1.9E-07 61.7 5.1 31 398-428 4-37 (184)
324 2pcj_A ABC transporter, lipopr 96.0 0.002 7E-08 67.0 1.8 39 392-430 25-63 (224)
325 3crm_A TRNA delta(2)-isopenten 96.0 0.0036 1.2E-07 68.6 3.8 37 685-721 6-42 (323)
326 2z43_A DNA repair and recombin 96.0 0.011 3.9E-07 64.9 7.8 77 394-470 104-217 (324)
327 3e1s_A Exodeoxyribonuclease V, 95.9 0.0066 2.2E-07 72.1 6.3 100 684-800 204-319 (574)
328 2if2_A Dephospho-COA kinase; a 95.9 0.0032 1.1E-07 63.8 3.2 29 399-428 3-31 (204)
329 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0031 1.1E-07 69.9 3.2 48 375-427 7-54 (359)
330 3nwj_A ATSK2; P loop, shikimat 95.9 0.005 1.7E-07 65.2 4.7 32 397-428 48-79 (250)
331 2bbw_A Adenylate kinase 4, AK4 95.9 0.0047 1.6E-07 64.8 4.5 29 398-426 28-56 (246)
332 1u94_A RECA protein, recombina 95.9 0.015 5.1E-07 64.8 8.8 76 395-470 61-155 (356)
333 3be4_A Adenylate kinase; malar 95.9 0.0049 1.7E-07 63.4 4.5 31 398-428 6-36 (217)
334 2iyv_A Shikimate kinase, SK; t 95.9 0.0037 1.3E-07 62.3 3.5 32 685-716 3-34 (184)
335 2i1q_A DNA repair and recombin 95.9 0.0041 1.4E-07 68.2 4.1 80 678-757 92-218 (322)
336 2pt7_A CAG-ALFA; ATPase, prote 95.9 0.0025 8.4E-08 70.5 2.3 70 397-466 171-250 (330)
337 1zak_A Adenylate kinase; ATP:A 95.9 0.0042 1.4E-07 64.1 3.9 30 397-426 5-34 (222)
338 4e22_A Cytidylate kinase; P-lo 95.9 0.0059 2E-07 64.6 5.1 30 397-426 27-56 (252)
339 2og2_A Putative signal recogni 95.9 0.008 2.7E-07 67.0 6.3 31 391-421 151-181 (359)
340 2jaq_A Deoxyguanosine kinase; 95.9 0.0051 1.7E-07 62.0 4.4 28 399-426 2-29 (205)
341 3sr0_A Adenylate kinase; phosp 95.9 0.0053 1.8E-07 63.0 4.5 33 400-434 3-35 (206)
342 2ewv_A Twitching motility prot 95.9 0.0082 2.8E-07 67.4 6.4 73 681-753 133-219 (372)
343 1b0u_A Histidine permease; ABC 95.9 0.0028 9.6E-08 67.6 2.4 39 392-430 27-65 (262)
344 2pbr_A DTMP kinase, thymidylat 95.9 0.0066 2.2E-07 60.6 5.0 30 400-429 3-35 (195)
345 1v5w_A DMC1, meiotic recombina 95.9 0.018 6.1E-07 63.9 8.9 77 394-470 119-233 (343)
346 2pt7_A CAG-ALFA; ATPase, prote 95.9 0.0047 1.6E-07 68.2 4.2 76 679-754 166-251 (330)
347 1pzn_A RAD51, DNA repair and r 95.8 0.012 4.2E-07 65.3 7.6 39 394-432 128-175 (349)
348 2pze_A Cystic fibrosis transme 95.8 0.0028 9.5E-08 66.2 2.2 40 391-430 28-67 (229)
349 1sgw_A Putative ABC transporte 95.8 0.0026 8.9E-08 65.8 1.9 38 393-430 31-68 (214)
350 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.0099 3.4E-07 63.1 6.4 37 684-720 4-43 (260)
351 2yhs_A FTSY, cell division pro 95.8 0.009 3.1E-07 69.0 6.4 46 376-421 272-317 (503)
352 2qi9_C Vitamin B12 import ATP- 95.8 0.0026 8.9E-08 67.4 1.8 40 391-431 20-59 (249)
353 2cdn_A Adenylate kinase; phosp 95.8 0.0045 1.5E-07 62.7 3.5 33 684-716 20-52 (201)
354 1g6h_A High-affinity branched- 95.8 0.0029 1E-07 67.3 2.2 39 392-430 28-66 (257)
355 1aky_A Adenylate kinase; ATP:A 95.8 0.0042 1.4E-07 64.0 3.3 33 683-715 3-35 (220)
356 2ze6_A Isopentenyl transferase 95.8 0.0046 1.6E-07 65.5 3.7 33 686-718 3-35 (253)
357 1gvn_B Zeta; postsegregational 95.8 0.0084 2.9E-07 64.8 5.8 38 683-720 32-69 (287)
358 2olj_A Amino acid ABC transpor 95.8 0.0032 1.1E-07 67.2 2.4 40 391-430 44-83 (263)
359 3asz_A Uridine kinase; cytidin 95.8 0.0068 2.3E-07 61.7 4.8 36 396-431 5-40 (211)
360 1jjv_A Dephospho-COA kinase; P 95.8 0.0052 1.8E-07 62.5 3.9 28 399-427 4-31 (206)
361 1nlf_A Regulatory protein REPA 95.8 0.0068 2.3E-07 65.0 5.0 113 680-800 26-182 (279)
362 3kl4_A SRP54, signal recogniti 95.8 0.029 9.9E-07 64.0 10.4 71 396-466 96-189 (433)
363 2r6a_A DNAB helicase, replicat 95.8 0.047 1.6E-06 62.8 12.4 39 679-717 198-240 (454)
364 1e4v_A Adenylate kinase; trans 95.8 0.006 2.1E-07 62.5 4.3 30 399-428 2-31 (214)
365 1ji0_A ABC transporter; ATP bi 95.8 0.0029 1E-07 66.5 2.0 39 392-430 27-65 (240)
366 3cm0_A Adenylate kinase; ATP-b 95.8 0.003 1E-07 62.9 2.0 32 684-715 4-35 (186)
367 3tr0_A Guanylate kinase, GMP k 95.8 0.0057 2E-07 61.8 4.1 27 396-422 6-32 (205)
368 1zuh_A Shikimate kinase; alpha 95.8 0.0044 1.5E-07 60.8 3.1 32 685-716 8-39 (168)
369 2jeo_A Uridine-cytidine kinase 95.7 0.0057 1.9E-07 64.3 4.2 29 395-423 23-51 (245)
370 2c95_A Adenylate kinase 1; tra 95.7 0.0038 1.3E-07 62.6 2.6 34 683-716 8-41 (196)
371 1vpl_A ABC transporter, ATP-bi 95.7 0.0035 1.2E-07 66.7 2.4 39 392-430 36-74 (256)
372 3dm5_A SRP54, signal recogniti 95.7 0.037 1.3E-06 63.2 11.0 71 396-466 99-192 (443)
373 3gfo_A Cobalt import ATP-bindi 95.7 0.0032 1.1E-07 67.7 2.0 39 392-430 29-67 (275)
374 1z6g_A Guanylate kinase; struc 95.7 0.0055 1.9E-07 63.3 3.7 28 394-421 20-47 (218)
375 2z0h_A DTMP kinase, thymidylat 95.7 0.0084 2.9E-07 60.1 5.0 30 400-429 3-35 (197)
376 2xb4_A Adenylate kinase; ATP-b 95.7 0.0072 2.5E-07 62.5 4.6 27 400-426 3-29 (223)
377 1znw_A Guanylate kinase, GMP k 95.7 0.006 2.1E-07 62.3 3.9 28 395-422 18-45 (207)
378 3be4_A Adenylate kinase; malar 95.7 0.0045 1.5E-07 63.8 2.9 33 684-716 5-37 (217)
379 2yz2_A Putative ABC transporte 95.7 0.0037 1.3E-07 66.8 2.4 39 392-430 28-66 (266)
380 1zd8_A GTP:AMP phosphotransfer 95.7 0.0044 1.5E-07 64.2 2.8 34 683-716 6-39 (227)
381 2ixe_A Antigen peptide transpo 95.7 0.0039 1.3E-07 66.9 2.5 40 391-430 39-78 (271)
382 2ihy_A ABC transporter, ATP-bi 95.7 0.0034 1.2E-07 67.6 2.1 40 391-430 41-80 (279)
383 2cbz_A Multidrug resistance-as 95.7 0.0028 9.5E-08 66.6 1.3 39 392-430 26-64 (237)
384 3r20_A Cytidylate kinase; stru 95.7 0.0085 2.9E-07 62.7 5.0 31 397-427 9-39 (233)
385 2ius_A DNA translocase FTSK; n 95.6 0.026 9.1E-07 65.6 9.6 75 744-832 297-374 (512)
386 1z6t_A APAF-1, apoptotic prote 95.6 0.065 2.2E-06 63.5 13.4 23 684-706 147-169 (591)
387 2onk_A Molybdate/tungstate ABC 95.6 0.0057 2E-07 64.3 3.7 36 394-430 22-57 (240)
388 2nq2_C Hypothetical ABC transp 95.6 0.0035 1.2E-07 66.5 2.0 38 392-429 26-63 (253)
389 3umf_A Adenylate kinase; rossm 95.6 0.0052 1.8E-07 63.7 3.2 41 680-722 25-65 (217)
390 3lw7_A Adenylate kinase relate 95.6 0.005 1.7E-07 60.0 3.0 29 686-715 3-31 (179)
391 1tev_A UMP-CMP kinase; ploop, 95.6 0.0048 1.6E-07 61.6 2.9 33 684-716 3-35 (196)
392 2b8t_A Thymidine kinase; deoxy 95.6 0.015 5E-07 60.5 6.6 71 684-755 12-101 (223)
393 1nks_A Adenylate kinase; therm 95.6 0.0048 1.6E-07 61.5 2.8 24 399-422 3-26 (194)
394 3crm_A TRNA delta(2)-isopenten 95.6 0.0077 2.6E-07 66.0 4.7 35 398-432 6-40 (323)
395 2ff7_A Alpha-hemolysin translo 95.6 0.0036 1.2E-07 66.1 2.0 38 392-429 30-67 (247)
396 2v54_A DTMP kinase, thymidylat 95.6 0.0079 2.7E-07 60.7 4.4 33 397-429 4-37 (204)
397 1kgd_A CASK, peripheral plasma 95.6 0.0073 2.5E-07 60.2 4.0 26 397-422 5-30 (180)
398 3t61_A Gluconokinase; PSI-biol 95.6 0.0074 2.5E-07 61.1 4.1 33 684-716 18-50 (202)
399 1lvg_A Guanylate kinase, GMP k 95.5 0.0067 2.3E-07 61.6 3.7 27 396-422 3-29 (198)
400 2fz4_A DNA repair protein RAD2 95.5 0.025 8.6E-07 59.1 8.1 37 685-721 109-146 (237)
401 3ake_A Cytidylate kinase; CMP 95.5 0.0092 3.1E-07 60.3 4.6 30 399-428 4-33 (208)
402 3upu_A ATP-dependent DNA helic 95.5 0.084 2.9E-06 60.8 13.2 23 399-421 47-69 (459)
403 1e6c_A Shikimate kinase; phosp 95.5 0.0061 2.1E-07 59.8 3.1 32 685-716 3-34 (173)
404 1ak2_A Adenylate kinase isoenz 95.5 0.0064 2.2E-07 63.3 3.4 33 684-716 16-48 (233)
405 3a00_A Guanylate kinase, GMP k 95.5 0.0069 2.4E-07 60.7 3.5 24 399-422 3-26 (186)
406 2zts_A Putative uncharacterize 95.5 0.051 1.7E-06 56.3 10.3 38 394-431 27-68 (251)
407 2bwj_A Adenylate kinase 5; pho 95.5 0.0034 1.2E-07 63.1 1.1 34 683-716 11-44 (199)
408 2zts_A Putative uncharacterize 95.5 0.019 6.5E-07 59.6 6.9 40 677-716 23-66 (251)
409 2j41_A Guanylate kinase; GMP, 95.5 0.0069 2.3E-07 61.3 3.4 26 396-421 5-30 (207)
410 2grj_A Dephospho-COA kinase; T 95.5 0.0077 2.6E-07 61.1 3.7 30 398-427 13-42 (192)
411 2plr_A DTMP kinase, probable t 95.5 0.0091 3.1E-07 60.5 4.3 27 398-424 5-31 (213)
412 2bdt_A BH3686; alpha-beta prot 95.4 0.0086 2.9E-07 59.9 4.0 24 399-422 4-27 (189)
413 3tlx_A Adenylate kinase 2; str 95.4 0.0065 2.2E-07 63.9 3.2 35 682-716 27-61 (243)
414 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.012 4.1E-07 62.4 5.3 33 398-430 5-40 (260)
415 1kht_A Adenylate kinase; phosp 95.4 0.0055 1.9E-07 61.0 2.5 26 684-709 3-28 (192)
416 3dl0_A Adenylate kinase; phosp 95.4 0.0068 2.3E-07 62.1 3.2 31 686-716 2-32 (216)
417 4eun_A Thermoresistant glucoki 95.4 0.0081 2.8E-07 60.9 3.7 31 683-713 28-58 (200)
418 1mv5_A LMRA, multidrug resista 95.4 0.0031 1.1E-07 66.5 0.5 34 392-425 23-56 (243)
419 3sr0_A Adenylate kinase; phosp 95.4 0.0077 2.6E-07 61.9 3.4 35 686-722 2-36 (206)
420 2vli_A Antibiotic resistance p 95.4 0.0066 2.3E-07 60.1 2.9 30 684-713 5-34 (183)
421 1knq_A Gluconate kinase; ALFA/ 95.4 0.0079 2.7E-07 59.3 3.4 31 684-714 8-38 (175)
422 1q3t_A Cytidylate kinase; nucl 95.4 0.013 4.5E-07 61.1 5.2 33 395-427 14-46 (236)
423 2it1_A 362AA long hypothetical 95.4 0.0082 2.8E-07 67.0 3.8 37 394-430 26-62 (362)
424 3fb4_A Adenylate kinase; psych 95.3 0.0074 2.5E-07 61.7 3.2 31 686-716 2-32 (216)
425 1z6t_A APAF-1, apoptotic prote 95.3 0.097 3.3E-06 62.0 13.3 22 398-419 148-169 (591)
426 3e70_C DPA, signal recognition 95.3 0.047 1.6E-06 60.0 9.8 27 395-421 127-153 (328)
427 1zak_A Adenylate kinase; ATP:A 95.3 0.0054 1.9E-07 63.2 2.1 33 683-715 4-36 (222)
428 2pjz_A Hypothetical protein ST 95.3 0.0054 1.8E-07 65.5 2.1 38 391-430 25-62 (263)
429 1g5t_A COB(I)alamin adenosyltr 95.3 0.034 1.2E-06 56.4 7.9 118 684-819 28-178 (196)
430 3e1s_A Exodeoxyribonuclease V, 95.3 0.053 1.8E-06 64.3 10.8 30 399-428 206-238 (574)
431 2pt5_A Shikimate kinase, SK; a 95.3 0.0084 2.9E-07 58.5 3.2 31 686-716 2-32 (168)
432 3d31_A Sulfate/molybdate ABC t 95.3 0.0073 2.5E-07 67.1 3.0 37 394-430 23-59 (348)
433 3tau_A Guanylate kinase, GMP k 95.2 0.0091 3.1E-07 61.1 3.5 28 396-423 7-34 (208)
434 3lnc_A Guanylate kinase, GMP k 95.2 0.0062 2.1E-07 63.3 2.2 34 389-422 19-53 (231)
435 2v9p_A Replication protein E1; 95.2 0.015 5.2E-07 63.3 5.1 29 393-421 122-150 (305)
436 2r6a_A DNAB helicase, replicat 95.2 0.068 2.3E-06 61.4 11.0 38 394-431 200-241 (454)
437 1g29_1 MALK, maltose transport 95.2 0.009 3.1E-07 67.0 3.4 37 394-430 26-62 (372)
438 1ukz_A Uridylate kinase; trans 95.2 0.0088 3E-07 60.5 3.0 33 684-716 15-47 (203)
439 2qor_A Guanylate kinase; phosp 95.2 0.011 3.7E-07 60.1 3.8 28 395-422 10-37 (204)
440 2zu0_C Probable ATP-dependent 95.1 0.0068 2.3E-07 64.8 2.2 31 391-421 40-70 (267)
441 1qf9_A UMP/CMP kinase, protein 95.1 0.0087 3E-07 59.6 2.9 33 684-716 6-38 (194)
442 2d2e_A SUFC protein; ABC-ATPas 95.1 0.0052 1.8E-07 65.0 1.3 29 392-420 24-52 (250)
443 1uf9_A TT1252 protein; P-loop, 95.1 0.013 4.6E-07 58.8 4.3 30 397-427 8-37 (203)
444 2j37_W Signal recognition part 95.1 0.071 2.4E-06 62.0 10.9 36 395-430 99-137 (504)
445 3sfz_A APAF-1, apoptotic pepti 95.1 0.074 2.5E-06 68.4 12.2 145 684-858 147-321 (1249)
446 2qt1_A Nicotinamide riboside k 95.1 0.0082 2.8E-07 61.0 2.6 30 395-424 19-49 (207)
447 1cke_A CK, MSSA, protein (cyti 95.1 0.012 4E-07 60.6 3.8 32 684-715 5-36 (227)
448 2i1q_A DNA repair and recombin 95.1 0.027 9.1E-07 61.6 6.9 26 395-420 96-121 (322)
449 2ghi_A Transport protein; mult 95.1 0.0077 2.6E-07 64.1 2.4 36 392-428 41-76 (260)
450 2oap_1 GSPE-2, type II secreti 95.1 0.012 4.2E-07 68.7 4.4 74 680-753 256-343 (511)
451 3uie_A Adenylyl-sulfate kinase 95.1 0.017 5.7E-07 58.6 4.8 39 682-720 23-64 (200)
452 1ly1_A Polynucleotide kinase; 95.1 0.0065 2.2E-07 59.9 1.7 29 685-713 3-32 (181)
453 2bbs_A Cystic fibrosis transme 95.1 0.006 2.1E-07 66.1 1.6 40 391-430 58-97 (290)
454 1uj2_A Uridine-cytidine kinase 95.1 0.019 6.4E-07 60.5 5.3 37 398-434 23-67 (252)
455 1oxx_K GLCV, glucose, ABC tran 95.1 0.0073 2.5E-07 67.2 2.2 39 392-430 26-64 (353)
456 2wwf_A Thymidilate kinase, put 95.1 0.01 3.5E-07 60.2 3.2 27 397-423 10-36 (212)
457 2i3b_A HCR-ntpase, human cance 95.0 0.013 4.4E-07 59.3 3.8 23 399-421 3-25 (189)
458 1s96_A Guanylate kinase, GMP k 95.0 0.013 4.4E-07 60.7 4.0 30 394-423 13-42 (219)
459 3nwj_A ATSK2; P loop, shikimat 95.0 0.0097 3.3E-07 63.0 2.9 33 684-716 48-80 (250)
460 2r8r_A Sensor protein; KDPD, P 95.0 0.12 4E-06 53.7 10.9 34 397-430 6-42 (228)
461 2yvu_A Probable adenylyl-sulfa 95.0 0.015 5.2E-07 58.0 4.2 34 396-429 12-48 (186)
462 3nh6_A ATP-binding cassette SU 95.0 0.0066 2.3E-07 66.2 1.6 38 392-429 75-112 (306)
463 2pez_A Bifunctional 3'-phospho 95.0 0.012 4E-07 58.4 3.2 36 683-718 4-42 (179)
464 3upu_A ATP-dependent DNA helic 95.0 0.028 9.5E-07 64.8 6.8 24 685-708 46-69 (459)
465 1vht_A Dephospho-COA kinase; s 94.9 0.019 6.5E-07 58.8 4.9 29 398-427 5-33 (218)
466 1zu4_A FTSY; GTPase, signal re 94.9 0.043 1.5E-06 60.1 8.0 56 375-430 78-141 (320)
467 1nn5_A Similar to deoxythymidy 94.9 0.012 4.2E-07 59.7 3.3 26 397-422 9-34 (215)
468 2v54_A DTMP kinase, thymidylat 94.9 0.012 4.2E-07 59.3 3.3 34 683-716 3-37 (204)
469 3tui_C Methionine import ATP-b 94.9 0.013 4.6E-07 65.2 3.8 37 394-430 51-87 (366)
470 3foz_A TRNA delta(2)-isopenten 94.9 0.012 4E-07 64.0 3.2 39 684-722 10-48 (316)
471 1e4v_A Adenylate kinase; trans 94.9 0.011 3.6E-07 60.7 2.8 31 686-716 2-32 (214)
472 1m7g_A Adenylylsulfate kinase; 94.9 0.02 6.7E-07 58.5 4.7 34 397-430 25-62 (211)
473 2q6t_A DNAB replication FORK h 94.9 0.12 4.2E-06 59.1 11.8 39 679-717 195-237 (444)
474 1rz3_A Hypothetical protein rb 94.8 0.041 1.4E-06 55.7 7.0 34 396-429 21-57 (201)
475 2bbw_A Adenylate kinase 4, AK4 94.8 0.014 4.8E-07 61.2 3.4 32 683-714 26-57 (246)
476 2h92_A Cytidylate kinase; ross 94.8 0.021 7.3E-07 58.4 4.7 29 399-427 5-33 (219)
477 2ga8_A Hypothetical 39.9 kDa p 94.7 0.0093 3.2E-07 66.1 1.8 30 685-714 25-54 (359)
478 3bh0_A DNAB-like replicative h 94.7 0.12 4.1E-06 56.3 10.7 38 394-431 65-105 (315)
479 1g5t_A COB(I)alamin adenosyltr 94.7 0.16 5.6E-06 51.4 10.7 31 398-428 29-62 (196)
480 2if2_A Dephospho-COA kinase; a 94.6 0.013 4.6E-07 59.2 2.7 30 686-716 3-32 (204)
481 3b85_A Phosphate starvation-in 94.6 0.014 4.7E-07 60.0 2.7 22 399-420 24-45 (208)
482 2oap_1 GSPE-2, type II secreti 94.6 0.019 6.5E-07 67.1 4.1 71 396-466 259-343 (511)
483 2jaq_A Deoxyguanosine kinase; 94.6 0.017 5.8E-07 58.1 3.2 29 686-714 2-30 (205)
484 3bh0_A DNAB-like replicative h 94.5 0.25 8.6E-06 53.8 12.9 38 679-716 63-103 (315)
485 3a8t_A Adenylate isopentenyltr 94.5 0.016 5.4E-07 63.8 3.1 34 398-431 41-74 (339)
486 2xb4_A Adenylate kinase; ATP-b 94.5 0.018 6.2E-07 59.5 3.4 30 686-715 2-31 (223)
487 3a8t_A Adenylate isopentenyltr 94.5 0.014 5E-07 64.1 2.7 37 684-720 40-76 (339)
488 2pbr_A DTMP kinase, thymidylat 94.5 0.021 7E-07 56.9 3.7 31 686-716 2-35 (195)
489 3foz_A TRNA delta(2)-isopenten 94.5 0.026 9E-07 61.3 4.7 37 397-433 10-46 (316)
490 2q6t_A DNAB replication FORK h 94.5 0.13 4.6E-06 58.8 11.0 37 395-431 198-238 (444)
491 3aez_A Pantothenate kinase; tr 94.5 0.024 8.2E-07 62.0 4.4 30 394-423 87-116 (312)
492 3sop_A Neuronal-specific septi 94.4 0.019 6.6E-07 61.4 3.5 28 399-426 4-31 (270)
493 3ney_A 55 kDa erythrocyte memb 94.4 0.023 7.8E-07 57.9 3.9 27 396-422 18-44 (197)
494 3r20_A Cytidylate kinase; stru 94.4 0.02 6.9E-07 59.8 3.6 32 684-715 9-40 (233)
495 3gd7_A Fusion complex of cysti 94.4 0.012 4.2E-07 66.2 1.9 34 394-428 44-77 (390)
496 3thx_B DNA mismatch repair pro 94.4 0.052 1.8E-06 67.5 7.6 27 680-706 669-695 (918)
497 2fz4_A DNA repair protein RAD2 94.3 0.082 2.8E-06 55.1 8.0 33 399-431 110-142 (237)
498 2f6r_A COA synthase, bifunctio 94.3 0.03 1E-06 60.2 4.6 30 397-427 75-104 (281)
499 2xxa_A Signal recognition part 94.3 0.16 5.5E-06 58.0 10.9 56 376-431 79-138 (433)
500 1cr0_A DNA primase/helicase; R 94.3 0.026 8.8E-07 60.9 4.1 27 395-421 33-59 (296)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.9e-105 Score=967.91 Aligned_cols=715 Identities=31% Similarity=0.493 Sum_probs=515.4
Q ss_pred CCccccccccccCccccccccccCCCCceEEeecHhhhhhccccccceEEEeecCCCcceEEEEEEecCCCCCccccCCC
Q 002337 66 LQLPAGILRFSKDKIDISDAKFASLDDSALLGLSTCVLKQLSVTSGSLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDGD 145 (934)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~l~~~~l~~l~~~~G~~v~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 145 (934)
.+++|+||+.++.| |++.|+++..||+++|.|+..+|++|||+.||+|.|+|.. ++.++|++..+.
T Consensus 10 ~~~~~~~~~~~~~~-~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~i~g~~---~~~~~~~~~~~~---------- 75 (806)
T 3cf2_A 10 DDLSTAILKQKNRP-NRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK---RREAVCIVLSDD---------- 75 (806)
T ss_dssp -----------CCT-TEEECBCCSSCCTTEEEECHHHHHHTTCCSSCEEEEECGG---GCBCCEEEEECT----------
T ss_pred CCchhhhhhccCCC-ceEEEccCCCCCCCEEEECHHHHHHcCCCCCCEEEEEcCC---CceEEEEEcCCC----------
Confidence 58999999999999 9999999999999999999999999999999999999766 778888887554
Q ss_pred CccCCCCCcccccCCCCCCCCccccccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCce
Q 002337 146 VHSKHSSPTMLTFPSIHLPQDDMELLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKASL 225 (934)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (934)
.+..+++.|+..++.|+++..|+
T Consensus 76 ------------------------~~~~~~i~~~~~~r~n~~v~~gd--------------------------------- 98 (806)
T 3cf2_A 76 ------------------------TCSDEKIRMNRVVRNNLRVRLGD--------------------------------- 98 (806)
T ss_dssp ------------------------TSBTTBCEECHHHHHTTTCCTTC---------------------------------
T ss_pred ------------------------CCCCCEEEeCHHHHHhcCCCCCC---------------------------------
Confidence 34567889999999999999975
Q ss_pred EEEEEEecCCCCCcceeeEEEeeecCCCCccccccCCchhhhhhhHHHHHHHHHhhcc-CCCeeecCCEEEEecccCCCC
Q 002337 226 IKLGLQSVGQLPKYASHLRVSFVKIPECGTLESLKGSSAIEAEDRQEKIDLALHNYFE-VDRYLARGDVFSVCINWNCSS 304 (934)
Q Consensus 226 ~~v~~~p~~~~p~~a~~~rv~~~~~p~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~f~-~~r~~~~gd~~~v~~~~~~~~ 304 (934)
.|+|.|++++ ++|..+.| .|...+++++.++ .++.+|++||. .+|+|.+||+|.|...
T Consensus 99 -~V~v~~~~~~-~~a~~v~l----~p~~~~~~~~~~~----------~~~~~l~~~~~~~~~~v~~gd~~~v~~~----- 157 (806)
T 3cf2_A 99 -VISIQPCPDV-KYGKRIHV----LPIDDTVEGITGN----------LFEVYLKPYFLEAYRPIRKGDIFLVRGG----- 157 (806)
T ss_dssp -EEEEEECCCC-CBCSBEEE----EEBTTTSTTCCSC----------HHHHTHHHHHTTTCCEEETTCEEEECCT-----
T ss_pred -EEEEEECCCC-CcCCEEEE----eccccchhccchh----------HHHHHHHHHHHhcCCcccCCCEEEEecC-----
Confidence 5788998876 68987555 7888888888777 89999999997 6899999999999753
Q ss_pred ccccccccccCCCCCceEEEEEEEEecCCCeEEEEeCCeeEEEEcCCCCCCCCCC--cccccCCCCcCCchHHHHHHHHH
Q 002337 305 MICIPCRQRLHRRSDNIIYFKVVAVEPSEETVLRVNCTKTALVLGGSIPSALPPD--LLISGSNDFVPLQGDTVKILASI 382 (934)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~vd~~~T~lv~~~~~~s~~p~~--~~~~~~~~~~~~~~~~~~~L~~i 382 (934)
+..+.|+|++++|.+. ++|+ ..|.+...+......+.. ..-..+.+++|++....+..+.+
T Consensus 158 --------------~~~~~f~V~~~~P~~~--~~v~-~~T~i~~~~~~~~~~~~~~~~~~v~~~dIgGl~~~~~~l~e~v 220 (806)
T 3cf2_A 158 --------------MRAVEFKVVETDPSPY--CIVA-PDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMV 220 (806)
T ss_dssp --------------TSCEEEEEEEESSSSE--EECC-TTSBCCBCSCCBCCCTTSCCSSSCCGGGCCSCCTTHHHHHHHH
T ss_pred --------------CcEEEEEEEEEeCCCC--eEEC-CCcEEEEeccccCcccccccCCCCChhhhcCHHHHHHHHHHHH
Confidence 5678999999999753 3333 446665544321111100 00112356777776554444555
Q ss_pred hhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEE
Q 002337 383 LAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTI 459 (934)
Q Consensus 383 l~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~I 459 (934)
..|+.+|+.| +.++++|||||||||||||+|||++|+++|.+++.++|+++++++.|+++..++.+|+.|+.++|||
T Consensus 221 ~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsI 300 (806)
T 3cf2_A 221 ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300 (806)
T ss_dssp HHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEE
T ss_pred HHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeE
Confidence 6789999877 4688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChh
Q 002337 460 LLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPT 539 (934)
Q Consensus 460 L~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~a 539 (934)
|||||+|.|+++++... ......+...|..+ +++...+.+|+||||||+++.||++
T Consensus 301 IfIDEiDal~~~r~~~~-----~~~~~riv~~LL~~-------------------mdg~~~~~~V~VIaaTN~~d~LD~A 356 (806)
T 3cf2_A 301 IFIDELDAIAPKREKTH-----GEVERRIVSQLLTL-------------------MDGLKQRAHVIVMAATNRPNSIDPA 356 (806)
T ss_dssp EEEESGGGTCCTTTTCC-----CTTHHHHHHHHHTH-------------------HHHCCGGGCEEEEEECSSTTTSCTT
T ss_pred EEEehhcccccccCCCC-----ChHHHHHHHHHHHH-------------------HhcccccCCEEEEEecCChhhcCHH
Confidence 99999999998653321 11222333222222 2222336789999999999999999
Q ss_pred hhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhccccc
Q 002337 540 IRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVD 617 (934)
Q Consensus 540 Lrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r~~~~~~ 617 (934)
++| ||+++|+++.|++++|.+||+.++++... ..++ .+..+|.+|+||+++||..||++|++.++++.....+
T Consensus 357 LrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dv----dl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~ 431 (806)
T 3cf2_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDV----DLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431 (806)
T ss_dssp TTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTC----CHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-Cccc----CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 999 89999999999999999999999987653 3333 4688999999999999999999999999987543332
Q ss_pred CCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhccccc--cc---------------------CCCCCccchh
Q 002337 618 KNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNAS--AL---------------------GAPKLPLLHK 674 (934)
Q Consensus 618 ~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~~~~~--~i---------------------~~pk~pl~~~ 674 (934)
..... ..........++++||..++...+..... .. ....||++++
T Consensus 432 ~~~~~-----------~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p 500 (806)
T 3cf2_A 432 LEDET-----------IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHP 500 (806)
T ss_dssp GTCCC-----------CSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCS
T ss_pred ccccc-----------cchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCH
Confidence 21110 00111123456677777777665432110 01 1223899999
Q ss_pred HHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEecccc
Q 002337 675 DLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELD 753 (934)
Q Consensus 675 ~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid 753 (934)
++|. .++.+++|+|||||||||||++|+++|++++.+|+.+++++++++|+|++|++++++|+.|+..+||||||||+|
T Consensus 501 ~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 501 DKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp GGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred HHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhh
Confidence 9998 599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCC-CCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHH
Q 002337 754 SLAPARGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLK 832 (934)
Q Consensus 754 ~l~~~r~~~-~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~ 832 (934)
+++++|+.. ++.+++.+|++++||++|||+.. ..+|+||||||+|+.||||++||||||+.|||++ |+.++|.+||+
T Consensus 581 sl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~-~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~l-Pd~~~R~~il~ 658 (806)
T 3cf2_A 581 SIAKARGGNIGDGGGAADRVINQILTEMDGMST-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL-PDEKSRVAILK 658 (806)
T ss_dssp GCC--------------CHHHHHHHHHHHSSCS-SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC------CHHHHTTT
T ss_pred HHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECC-cCHHHHHHHHH
Confidence 999999743 45566789999999999999975 5789999999999999999999999999999998 89999999999
Q ss_pred HHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCC--------CccccccCcccccHHHHH
Q 002337 833 ALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSD--------SSRIDQADSVVVEYDDFV 904 (934)
Q Consensus 833 ~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~--------~~~~~~~~~~~it~~df~ 904 (934)
.++++.++..++|+..||+. |+|||||||.++|++|++.|+++.+........ .........+.|+++||+
T Consensus 659 ~~l~~~~~~~~~dl~~la~~-t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~ 737 (806)
T 3cf2_A 659 ANLRKSPVAKDVDLEFLAKM-TNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFE 737 (806)
T ss_dssp TTSSCC--CCC-----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCT
T ss_pred HHhcCCCCCCCCCHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHH
Confidence 99999999999999999999 699999999999999999999998764321100 001112233579999999
Q ss_pred HHHHhhCCCcCHHHHHHHHHHHHHhccC
Q 002337 905 KVLRELSPSLSMAELKKYELLRDQFEGS 932 (934)
Q Consensus 905 ~al~~~~psvs~~~l~~y~~~~~~~~~~ 932 (934)
+|+++++||||++++++|++|+++|+++
T Consensus 738 ~al~~~~pSvs~~~l~~y~~~~~~f~~~ 765 (806)
T 3cf2_A 738 EAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp TTC---------------CCCC------
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999753
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=3.8e-77 Score=738.04 Aligned_cols=715 Identities=31% Similarity=0.502 Sum_probs=520.2
Q ss_pred CCCccccccccccCccccccccccCCCCceEEeecHhhhhhccccccceEEEeecCCCcceEEEEEEecCCCCCccccCC
Q 002337 65 SLQLPAGILRFSKDKIDISDAKFASLDDSALLGLSTCVLKQLSVTSGSLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDG 144 (934)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~l~~~~l~~l~~~~G~~v~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 144 (934)
+.+++++||++++.| +++.|+++..+|...|.+++.+|.+|||+.||.|.|+|.. .+.+.++|..+.
T Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------- 75 (806)
T 1ypw_A 9 GDDLSTAILKQKNRP-NRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK---RREAVCIVLSDD--------- 75 (806)
T ss_dssp --------CCCCCCT-TEEEEECCSSCCSSCEEECHHHHHHHTCCTTCEEEEEETT---TEECCEEEEECS---------
T ss_pred ccccchhHHhccCCC-ceEEEccCcCCcCCEEEECHHHHHHcCCCCCCEEEEecCc---cCcEEEEEecCC---------
Confidence 468999999999999 9999999999999999999999999999999999999865 556666665322
Q ss_pred CCccCCCCCcccccCCCCCCCCccccccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCc
Q 002337 145 DVHSKHSSPTMLTFPSIHLPQDDMELLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKAS 224 (934)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 224 (934)
..+.+++.|+-.++.|+|+..|+
T Consensus 76 -------------------------~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 98 (806)
T 1ypw_A 76 -------------------------TCSDEKIRMNRVVRNNLRVRLGD-------------------------------- 98 (806)
T ss_dssp -------------------------SSCTTEEECCHHHHTTTTCCTTC--------------------------------
T ss_pred -------------------------CCCCCeEEecHHHHhhcCCCCCC--------------------------------
Confidence 23458899999999999999985
Q ss_pred eEEEEEEecCCCCCcceeeEEEeeecCCCCccccccCCchhhhhhhHHHHHHHHHhhcc-CCCeeecCCEEEEecccCCC
Q 002337 225 LIKLGLQSVGQLPKYASHLRVSFVKIPECGTLESLKGSSAIEAEDRQEKIDLALHNYFE-VDRYLARGDVFSVCINWNCS 303 (934)
Q Consensus 225 ~~~v~~~p~~~~p~~a~~~rv~~~~~p~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~f~-~~r~~~~gd~~~v~~~~~~~ 303 (934)
.|+|.|+.++ ++|.++++ .|..+++.++.++ +|+.+|++||. .+|||.+||+|.+...
T Consensus 99 --~v~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~---- 157 (806)
T 1ypw_A 99 --VISIQPCPDV-KYGKRIHV----LPIDDTVEGITGN----------LFEVYLKPYFLEAYRPIRKGDIFLVRGG---- 157 (806)
T ss_dssp --EEEEEECTTC-CBCSEEEE----EECTTTSSSCCSC----------CTTTTTGGGTTTTCCBCCTTCEEEECCS----
T ss_pred --EEEEEECCCC-CcCcEEEE----eCCccchhhcccc----------hHHHHHHHHhccCCccccCCCEEEecCC----
Confidence 5888998665 68986444 6777888777776 78889999997 5999999999988743
Q ss_pred CccccccccccCCCCCceEEEEEEEEecCCCeEEEEeCCeeEEEEcCCCCCC--CCCCcccccCCCCcCCchHHHHHHHH
Q 002337 304 SMICIPCRQRLHRRSDNIIYFKVVAVEPSEETVLRVNCTKTALVLGGSIPSA--LPPDLLISGSNDFVPLQGDTVKILAS 381 (934)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~vd~~~T~lv~~~~~~s~--~p~~~~~~~~~~~~~~~~~~~~~L~~ 381 (934)
+..+.|+|++++|..... +.+ .|.+...+..... ......-....+.++......+....
T Consensus 158 ---------------~~~~~~~v~~~~p~~~~~--v~~-~t~~~~~~~~~~~~~~~~~~~~v~~~di~G~~~~~~~l~e~ 219 (806)
T 1ypw_A 158 ---------------MRAVEFKVVETDPSPYCI--VAP-DTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEM 219 (806)
T ss_dssp ---------------SSCEEEEEEEETTTTCCB--CCS-SSEEEECSCCCCCCTTSCCSSSCCGGGCCSCSGGGGHHHHH
T ss_pred ---------------CcceEEEEEeccCCCCce--ecC-CeEEEecCccccchhhhcccCCCCHHHhCChHHHHHHHHHH
Confidence 567999999999975433 233 3444444321111 00001111235566666554444455
Q ss_pred HhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCCCE
Q 002337 382 ILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458 (934)
Q Consensus 382 il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~ 458 (934)
+..|+.+|..+ +..++.+|||+|||||||||+++++|++++.+++.++|.++.+.+.++.+..++.+|+.+....|+
T Consensus 220 i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~ 299 (806)
T 1ypw_A 220 VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299 (806)
T ss_dssp HHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCc
Confidence 55677787765 467889999999999999999999999999999999999999988999999999999999988999
Q ss_pred EEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCCh
Q 002337 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPP 538 (934)
Q Consensus 459 IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~ 538 (934)
++||||+|.+.+.+... .......+...+..+++. ...+..+++|++||+++.+++
T Consensus 300 il~iDEid~l~~~~~~~-----~~~~~~~~~~~Ll~ll~g-------------------~~~~~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 300 IIFIDELDAIAPKREKT-----HGEVERRIVSQLLTLMDG-------------------LKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp EEEEESGGGTSCTTSCC-----CSHHHHHHHHHHHHHHHS-------------------SCTTSCCEEEEECSCTTTSCT
T ss_pred EEEeccHHHhhhccccc-----cchHHHHHHHHHHHHhhh-------------------hcccccEEEecccCCchhcCH
Confidence 99999999998743211 111223333333333321 122567999999999999999
Q ss_pred hhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 002337 539 TIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEV 616 (934)
Q Consensus 539 aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r~~~~~ 616 (934)
++++ ||++++.++.|+.++|.+|++.+++.... ..+. .+..++..++||+++|+..++++|+..++++.....
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~----~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i 430 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDV----DLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCC-CTTC----CTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCC-cccc----hhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhcccc
Confidence 9998 89999999999999999999999876543 2233 257899999999999999999999988887643221
Q ss_pred cCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhccccc--cc---------------------CCCCCccch
Q 002337 617 DKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNAS--AL---------------------GAPKLPLLH 673 (934)
Q Consensus 617 ~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~~~~~--~i---------------------~~pk~pl~~ 673 (934)
+.. ...+ .........+..+++..++......... .. ....+|+.+
T Consensus 431 ~~~---~~~~--------~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~ 499 (806)
T 1ypw_A 431 DLE---DETI--------DAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEH 499 (806)
T ss_dssp SCH---HHHC--------CHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSS
T ss_pred chh---hhcc--------chhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhhhHHHHHHhhhhc
Confidence 110 0000 0001122345556666666544321100 00 111356667
Q ss_pred hHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccc
Q 002337 674 KDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDEL 752 (934)
Q Consensus 674 ~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEi 752 (934)
++.|. .++.++.++||+||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|+.|+...||||||||+
T Consensus 500 ~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEi 579 (806)
T 1ypw_A 500 PDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDEL 579 (806)
T ss_dssp CTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSH
T ss_pred hHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEECh
Confidence 77665 48888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCC-CCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHH
Q 002337 753 DSLAPARGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVL 831 (934)
Q Consensus 753 d~l~~~r~~~-~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il 831 (934)
|+++++|+.. ++..+..++++++||.+||++.. ..+|+||+|||+|+.||||++|||||++.|++++ |+.++|.+||
T Consensus 580 d~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~-~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~-p~~~~r~~Il 657 (806)
T 1ypw_A 580 DSIAKARGGNIGDGGGAADRVINQILTEMDGMST-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL-PDEKSRVAIL 657 (806)
T ss_dssp HHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCC-CCCSHHHHHT
T ss_pred hhhhhhccCCCCCcchhHHHHHHHHHHHHhcccc-cCCeEEEEecCCcccCCHHHhCccccCceeecCC-CCHHHHHHHH
Confidence 9999988643 23345678999999999999865 4689999999999999999999999999999997 7889999999
Q ss_pred HHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCC-----CC---ccccccCcccccHHHH
Q 002337 832 KALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNS-----DS---SRIDQADSVVVEYDDF 903 (934)
Q Consensus 832 ~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~-----~~---~~~~~~~~~~it~~df 903 (934)
+.++++.++..++++..+++. ++||+|+||.++|++|++.|+++.+....... .. ..........|+++||
T Consensus 658 ~~~l~~~~~~~~~~l~~la~~-t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f 736 (806)
T 1ypw_A 658 KANLRKSPVAKDVDLEFLAKM-TNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHF 736 (806)
T ss_dssp TTTTSCC----CCCCSCSCGG-GSSSCCHHHHHHHHHHHHHHHSCC------------------------CCTTTTTTSS
T ss_pred HHHhccCCCCcccCHHHHHHh-ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHHH
Confidence 999999999999999999999 59999999999999999999988654311000 00 0011122347999999
Q ss_pred HHHHHhhCCCcCHHHHHHHHHHHHHhcc
Q 002337 904 VKVLRELSPSLSMAELKKYELLRDQFEG 931 (934)
Q Consensus 904 ~~al~~~~psvs~~~l~~y~~~~~~~~~ 931 (934)
++|++.++||+|.+++++|++|.++|+.
T Consensus 737 ~~a~~~~~~svs~~~~~~ye~~~~~~~~ 764 (806)
T 1ypw_A 737 EEAMRFARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp CCCCCC----------------------
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999865
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-49 Score=447.97 Aligned_cols=238 Identities=36% Similarity=0.646 Sum_probs=212.5
Q ss_pred CCccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcE
Q 002337 668 KLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746 (934)
Q Consensus 668 k~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~v 746 (934)
.||+++|++|. .|+.+++|+|||||||||||++|+|+|++++.+|+.++++++.++|+|+++++++++|..|+..+|||
T Consensus 165 ~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~I 244 (405)
T 4b4t_J 165 ELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSI 244 (405)
T ss_dssp HHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCce
Confidence 48999999998 49999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccCCCCCCCC-chhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHH
Q 002337 747 IFFDELDSLAPARGASGDS-GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVS 825 (934)
Q Consensus 747 lfiDEid~l~~~r~~~~~~-~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~ 825 (934)
|||||+|+++++|+..+.+ .....+++++||++|||+.. ..+|+||||||+|+.||||++||||||+.|+|++ |+.+
T Consensus 245 IFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~l-Pd~~ 322 (405)
T 4b4t_J 245 IFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET-SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPP-PSVA 322 (405)
T ss_dssp EEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC-CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCC-CCHH
T ss_pred EeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC-CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCC-cCHH
Confidence 9999999999998754332 33567899999999999975 5789999999999999999999999999999997 8999
Q ss_pred HHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHH
Q 002337 826 YRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVK 905 (934)
Q Consensus 826 ~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~ 905 (934)
+|.+||+.+++++++..++|+..+|+. |+|||||||.++|++|++.|+++. ...|+++||++
T Consensus 323 ~R~~Il~~~~~~~~l~~dvdl~~lA~~-t~G~SGADi~~l~~eA~~~Air~~-----------------~~~vt~~Df~~ 384 (405)
T 4b4t_J 323 ARAEILRIHSRKMNLTRGINLRKVAEK-MNGCSGADVKGVCTEAGMYALRER-----------------RIHVTQEDFEL 384 (405)
T ss_dssp HHHHHHHHHHTTSBCCSSCCHHHHHHH-CCSCCHHHHHHHHHHHHHHHHHTT-----------------CSBCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCccCCHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHcC-----------------CCCcCHHHHHH
Confidence 999999999999999999999999999 699999999999999999999762 23599999999
Q ss_pred HHHhhCCCcCHHHHHHHHHH
Q 002337 906 VLRELSPSLSMAELKKYELL 925 (934)
Q Consensus 906 al~~~~psvs~~~l~~y~~~ 925 (934)
|++++.|+..+..+..++.|
T Consensus 385 Al~~v~~~~~~~~~s~~k~~ 404 (405)
T 4b4t_J 385 AVGKVMNKNQETAISVAKLF 404 (405)
T ss_dssp HHHHHHHHHTCC--------
T ss_pred HHHHHhCccccccchhHhhh
Confidence 99998776655556555555
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-48 Score=437.85 Aligned_cols=233 Identities=36% Similarity=0.646 Sum_probs=214.4
Q ss_pred CCccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcE
Q 002337 668 KLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746 (934)
Q Consensus 668 k~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~v 746 (934)
.+|+.+|++|. .|+.+++|+|||||||||||++|+|+|++++++|+.++++++.++|+|+++++++.+|..|+..+|||
T Consensus 199 ~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~I 278 (437)
T 4b4t_I 199 ELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSI 278 (437)
T ss_dssp HHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcE
Confidence 37899999998 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccCCCCCCCC-chhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHH
Q 002337 747 IFFDELDSLAPARGASGDS-GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVS 825 (934)
Q Consensus 747 lfiDEid~l~~~r~~~~~~-~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~ 825 (934)
|||||+|+++++|+..+.. .....+++++||++|||+.. ..+|+||||||+|+.|||||+||||||+.|+|++ |+.+
T Consensus 279 IfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~-~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~l-Pd~~ 356 (437)
T 4b4t_I 279 VFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD-RGDVKVIMATNKIETLDPALIRPGRIDRKILFEN-PDLS 356 (437)
T ss_dssp EEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC-SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCC-CCHH
T ss_pred EEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC-CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCC-cCHH
Confidence 9999999999999754332 34567899999999999865 5689999999999999999999999999999997 8999
Q ss_pred HHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHH
Q 002337 826 YRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVK 905 (934)
Q Consensus 826 ~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~ 905 (934)
+|.+||+.+++++++..++|+..+|+. |+|||||||.++|++|++.|+++. ...|+++||++
T Consensus 357 ~R~~Il~~~l~~~~l~~dvdl~~LA~~-T~GfSGADI~~l~~eA~~~Air~~-----------------~~~It~eDf~~ 418 (437)
T 4b4t_I 357 TKKKILGIHTSKMNLSEDVNLETLVTT-KDDLSGADIQAMCTEAGLLALRER-----------------RMQVTAEDFKQ 418 (437)
T ss_dssp HHHHHHHHHHTTSCBCSCCCHHHHHHH-CCSCCHHHHHHHHHHHHHHHHHTT-----------------CSCBCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcCCHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHcC-----------------CCccCHHHHHH
Confidence 999999999999999999999999999 699999999999999999999763 13589999999
Q ss_pred HHHhhCCCcCHHHHH
Q 002337 906 VLRELSPSLSMAELK 920 (934)
Q Consensus 906 al~~~~psvs~~~l~ 920 (934)
|++++.|+.++++++
T Consensus 419 Al~rv~~~~~~e~le 433 (437)
T 4b4t_I 419 AKERVMKNKVEENLE 433 (437)
T ss_dssp HHHHHHHHHCCCSSS
T ss_pred HHHHHhCCCChhhHH
Confidence 999999887766554
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-47 Score=431.83 Aligned_cols=237 Identities=35% Similarity=0.621 Sum_probs=211.8
Q ss_pred CCccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcE
Q 002337 668 KLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746 (934)
Q Consensus 668 k~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~v 746 (934)
.+|+.+|++|. .|+.+++|+|||||||||||++|+|+|++++++|+.++++++.++|+|+++++++.+|..|+..+|||
T Consensus 198 ~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~I 277 (437)
T 4b4t_L 198 ELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCI 277 (437)
T ss_dssp HHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEE
T ss_pred HHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCce
Confidence 47999999998 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccCCCCCCC-CchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHH
Q 002337 747 IFFDELDSLAPARGASGD-SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVS 825 (934)
Q Consensus 747 lfiDEid~l~~~r~~~~~-~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~ 825 (934)
|||||+|+++++|+..+. ......+++++||++|||+.. ..+|+||||||+|+.|||||+||||||+.|+|++ |+.+
T Consensus 278 ifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~l-Pd~~ 355 (437)
T 4b4t_L 278 IFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN-LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPL-PNEA 355 (437)
T ss_dssp EEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC-TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCC-CCHH
T ss_pred eeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC-CCCeEEEEecCCchhhCHHHhCCCccceeeecCC-cCHH
Confidence 999999999999975443 334567899999999999965 4679999999999999999999999999999997 8999
Q ss_pred HHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHH
Q 002337 826 YRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVK 905 (934)
Q Consensus 826 ~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~ 905 (934)
+|.+||+.+++++++..++|+..+|+. |+|||||||.++|++|++.|+++. ...|+++||++
T Consensus 356 ~R~~Il~~~~~~~~~~~d~dl~~lA~~-t~G~sGADi~~l~~eA~~~air~~-----------------~~~i~~~d~~~ 417 (437)
T 4b4t_L 356 GRLEIFKIHTAKVKKTGEFDFEAAVKM-SDGFNGADIRNCATEAGFFAIRDD-----------------RDHINPDDLMK 417 (437)
T ss_dssp HHHHHHHHHHHTSCBCSCCCHHHHHHT-CCSCCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcccCHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHcC-----------------CCCCCHHHHHH
Confidence 999999999999999999999999999 699999999999999999999763 12589999999
Q ss_pred HHHhhCCCcCHHHHHHHHH
Q 002337 906 VLRELSPSLSMAELKKYEL 924 (934)
Q Consensus 906 al~~~~psvs~~~l~~y~~ 924 (934)
|++++.|+...+....|++
T Consensus 418 Al~~v~~~~k~e~~~e~~K 436 (437)
T 4b4t_L 418 AVRKVAEVKKLEGTIEYQK 436 (437)
T ss_dssp HHHHHHHTCC---------
T ss_pred HHHHHHhccCcccchhhhc
Confidence 9999999887766555554
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-47 Score=429.51 Aligned_cols=238 Identities=33% Similarity=0.653 Sum_probs=209.5
Q ss_pred CCccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcE
Q 002337 668 KLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746 (934)
Q Consensus 668 k~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~v 746 (934)
.+|+.+|++|. .|+.+++|+|||||||||||++|+|+|++++.+|+.++++++.++|+|+++++++.+|..|+..+|||
T Consensus 226 ~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~I 305 (467)
T 4b4t_H 226 ELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACI 305 (467)
T ss_dssp HHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCce
Confidence 47999999998 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccCCCCCCCC-chhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHH
Q 002337 747 IFFDELDSLAPARGASGDS-GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVS 825 (934)
Q Consensus 747 lfiDEid~l~~~r~~~~~~-~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~ 825 (934)
|||||+|+++++|+..+.+ .....++++++|.+|||... ..+|+||||||+|+.||||++||||||+.|+|++ |+.+
T Consensus 306 IfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~l-Pd~~ 383 (467)
T 4b4t_H 306 IFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP-RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL-PDLE 383 (467)
T ss_dssp EEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC-TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCC-CCHH
T ss_pred EeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC-CCcEEEEeCCCCcccCChhhhccccccEEEEeCC-cCHH
Confidence 9999999999999754432 33456789999999999865 5689999999999999999999999999999997 8999
Q ss_pred HHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHH
Q 002337 826 YRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVK 905 (934)
Q Consensus 826 ~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~ 905 (934)
+|.+||+.+++++++..++|+..+|+. |+|||||||.++|++|++.|+++. ...|+++||++
T Consensus 384 ~R~~Ilk~~l~~~~l~~dvdl~~LA~~-T~GfSGADI~~l~~eAa~~Air~~-----------------~~~it~~Df~~ 445 (467)
T 4b4t_H 384 GRANIFRIHSKSMSVERGIRWELISRL-CPNSTGAELRSVCTEAGMFAIRAR-----------------RKVATEKDFLK 445 (467)
T ss_dssp HHHHHHHHHHTTSCBCSSCCHHHHHHH-CCSCCHHHHHHHHHHHHHHHHHHT-----------------CSSBCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHcC-----------------CCccCHHHHHH
Confidence 999999999999999999999999999 599999999999999999999873 12589999999
Q ss_pred HHHhhCCCcC-HHHHHHHHHH
Q 002337 906 VLRELSPSLS-MAELKKYELL 925 (934)
Q Consensus 906 al~~~~psvs-~~~l~~y~~~ 925 (934)
|++++.++.. .....+|.+|
T Consensus 446 Al~kV~~g~~k~s~~~~y~~~ 466 (467)
T 4b4t_H 446 AVDKVISGYKKFSSTSRYMQY 466 (467)
T ss_dssp HHHHHHHHHCC----------
T ss_pred HHHHHhcCcccchhHHHHHhh
Confidence 9999865433 2345667766
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-46 Score=430.54 Aligned_cols=229 Identities=36% Similarity=0.622 Sum_probs=211.8
Q ss_pred CCccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcE
Q 002337 668 KLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746 (934)
Q Consensus 668 k~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~v 746 (934)
.+|+.+|++|. .|+.+++|+|||||||||||++|+|+|++++.+|+.++++++.++|+|+++++++.+|..|+..+|||
T Consensus 198 ~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~I 277 (434)
T 4b4t_M 198 VLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTI 277 (434)
T ss_dssp HHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEE
T ss_pred HHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeE
Confidence 47999999998 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccCCCCCCCC-chhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHH
Q 002337 747 IFFDELDSLAPARGASGDS-GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVS 825 (934)
Q Consensus 747 lfiDEid~l~~~r~~~~~~-~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~ 825 (934)
|||||+|+++++|..++.+ .....+++++||++|||+.. ..+|+||||||+|+.||||++||||||+.|+|++ |+.+
T Consensus 278 ifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~-~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~l-Pd~~ 355 (434)
T 4b4t_M 278 IFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS-DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPL-PSED 355 (434)
T ss_dssp EEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS-SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCC-CCHH
T ss_pred EeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC-CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCC-cCHH
Confidence 9999999999999754332 23456789999999999975 4689999999999999999999999999999997 8999
Q ss_pred HHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHH
Q 002337 826 YRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVK 905 (934)
Q Consensus 826 ~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~ 905 (934)
+|.+||+.+++++++..++|+..+|+. |+|||||||.++|++|++.|+++. ...|+++||.+
T Consensus 356 ~R~~Il~~~~~~~~~~~dvdl~~lA~~-t~G~sGADi~~l~~eA~~~a~r~~-----------------~~~i~~~Df~~ 417 (434)
T 4b4t_M 356 SRAQILQIHSRKMTTDDDINWQELARS-TDEFNGAQLKAVTVEAGMIALRNG-----------------QSSVKHEDFVE 417 (434)
T ss_dssp HHHHHHHHHHHHSCBCSCCCHHHHHHH-CSSCCHHHHHHHHHHHHHHHHHHT-----------------CSSBCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcCCHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHcC-----------------CCCcCHHHHHH
Confidence 999999999999999999999999999 699999999999999999999863 12589999999
Q ss_pred HHHhhCCCcCH
Q 002337 906 VLRELSPSLSM 916 (934)
Q Consensus 906 al~~~~psvs~ 916 (934)
|+++++|+.+.
T Consensus 418 Al~~v~~~~~~ 428 (434)
T 4b4t_M 418 GISEVQARKSK 428 (434)
T ss_dssp HHHSCSSSCCC
T ss_pred HHHHHhCCCCc
Confidence 99999998763
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-46 Score=428.56 Aligned_cols=236 Identities=34% Similarity=0.609 Sum_probs=214.7
Q ss_pred CCccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcE
Q 002337 668 KLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCV 746 (934)
Q Consensus 668 k~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~v 746 (934)
.+|+.+|++|. .|+.+++|+|||||||||||++|+|+|++++++|+.++++++.++|+|+++++++++|..|+..+|||
T Consensus 189 ~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~I 268 (428)
T 4b4t_K 189 ELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSI 268 (428)
T ss_dssp HHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCe
Confidence 37899999998 49999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccCCCCCC-CCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHH
Q 002337 747 IFFDELDSLAPARGASG-DSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVS 825 (934)
Q Consensus 747 lfiDEid~l~~~r~~~~-~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~ 825 (934)
|||||+|+++++|+..+ ...+...+++++||++|||+.. ..+|+||||||+|+.||||++||||||+.|+||-+|+.+
T Consensus 269 ifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~-~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~ 347 (428)
T 4b4t_K 269 IFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ-STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRR 347 (428)
T ss_dssp EEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS-SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHH
T ss_pred eechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC-CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHH
Confidence 99999999999996543 2334678999999999999975 568999999999999999999999999999997348999
Q ss_pred HHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHH
Q 002337 826 YRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVK 905 (934)
Q Consensus 826 ~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~ 905 (934)
+|..||+.+++++++..++|+..+|.. |+|||||||.++|++|++.|+++. ...|+++||++
T Consensus 348 ~R~~Il~~~~~~~~l~~~~dl~~lA~~-t~G~sgadi~~l~~eA~~~a~r~~-----------------~~~i~~~d~~~ 409 (428)
T 4b4t_K 348 ERRLIFGTIASKMSLAPEADLDSLIIR-NDSLSGAVIAAIMQEAGLRAVRKN-----------------RYVILQSDLEE 409 (428)
T ss_dssp HHHHHHHHHHHSSCBCTTCCHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcccCHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHCC-----------------CCCCCHHHHHH
Confidence 999999999999999999999999999 699999999999999999999863 13589999999
Q ss_pred HHHh-hCCCcCHHHHHHH
Q 002337 906 VLRE-LSPSLSMAELKKY 922 (934)
Q Consensus 906 al~~-~~psvs~~~l~~y 922 (934)
|+.+ ++++.+.++++.|
T Consensus 410 A~~~~~~~~~~~~~~d~y 427 (428)
T 4b4t_K 410 AYATQVKTDNTVDKFDFY 427 (428)
T ss_dssp HHHHHSCSCCCSSCCCSC
T ss_pred HHHHhhCccCCccHhhhh
Confidence 9976 6888877665554
No 9
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=5.1e-39 Score=375.82 Aligned_cols=446 Identities=22% Similarity=0.328 Sum_probs=330.5
Q ss_pred CCCccccccccccCccccccccccCCCCceEEeecHhhhhhccccccceEEEeecCCCcceEEEEEEecCCCCCccccCC
Q 002337 65 SLQLPAGILRFSKDKIDISDAKFASLDDSALLGLSTCVLKQLSVTSGSLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDG 144 (934)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~l~~~~l~~l~~~~G~~v~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 144 (934)
+.+++++||+.++.| |++.|+++..+|.+.|.|+.++|.+|||+.||.|.|+|.. +|.|.+.++.+.
T Consensus 9 ~~~~~~~~~~~~~~~-~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~~~g~~---~~~~~~~~~~~~--------- 75 (489)
T 3hu3_A 9 GDDLSTAILKQKNRP-NRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK---RREAVCIVLSDD--------- 75 (489)
T ss_dssp --------CCCCCCT-TEEEEECCTTCCTTEEEECHHHHHHHTCCTTCEEEEECST---TCEEEEEEEECT---------
T ss_pred ccccchhhhhcccCC-CeeEEccCCCCcCCEEEECHHHHHHcCCCCCCEEEEecCc---cCcEEEEEeeCC---------
Confidence 568999999999999 9999999999999999999999999999999999999765 678888886332
Q ss_pred CCccCCCCCcccccCCCCCCCCccccccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCc
Q 002337 145 DVHSKHSSPTMLTFPSIHLPQDDMELLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKAS 224 (934)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 224 (934)
.++.+++.|+..++.|+|+..|+
T Consensus 76 -------------------------~~~~~~i~~~~~~r~n~~~~~gd-------------------------------- 98 (489)
T 3hu3_A 76 -------------------------TCSDEKIRMNRVVRNNLRVRLGD-------------------------------- 98 (489)
T ss_dssp -------------------------TSCTTEEECCHHHHHHTTCCTTC--------------------------------
T ss_pred -------------------------CCCCCEEEecHHHHhhcCCCCCC--------------------------------
Confidence 34568899999999999999985
Q ss_pred eEEEEEEecCCCCCcceeeEEEeeecCCCCccccccCCchhhhhhhHHHHHHHHHhhcc-CCCeeecCCEEEEecccCCC
Q 002337 225 LIKLGLQSVGQLPKYASHLRVSFVKIPECGTLESLKGSSAIEAEDRQEKIDLALHNYFE-VDRYLARGDVFSVCINWNCS 303 (934)
Q Consensus 225 ~~~v~~~p~~~~p~~a~~~rv~~~~~p~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~f~-~~r~~~~gd~~~v~~~~~~~ 303 (934)
.|.|.++..+ ++|..++| .|....|+.++.. .||..+|||+. ..+++.+||.+.+...
T Consensus 99 --~v~v~~~~~~-~~a~~v~~----~~~~~av~a~~~g----------a~d~~~Kp~~~~~l~~~~~~~~~~~~~~---- 157 (489)
T 3hu3_A 99 --VISIQPCPDV-KYGKRIHV----LPIDDTVEGITGN----------LFEVYLKPYFLEAYRPIRKGDIFLVHGG---- 157 (489)
T ss_dssp --EEEEEECTTC-CBCSEEEE----EEBGGGSSSCCSC----------HHHHTHHHHHTTTCEEEETTCEEEEEET----
T ss_pred --EEEEEECCCC-CccCEEEE----cCCCcccccccch----------hHHHHhHHHHhhcCcccccCCEEEecCC----
Confidence 5788888665 69997555 5777777777765 89999999986 6899999999988753
Q ss_pred CccccccccccCCCCCceEEEEEEEEecCCCeEEEEeCCeeEEEEcCCCCCCC-CCCcc-cccCCCCcCCchHHHHHHHH
Q 002337 304 SMICIPCRQRLHRRSDNIIYFKVVAVEPSEETVLRVNCTKTALVLGGSIPSAL-PPDLL-ISGSNDFVPLQGDTVKILAS 381 (934)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~vd~~~T~lv~~~~~~s~~-p~~~~-~~~~~~~~~~~~~~~~~L~~ 381 (934)
++.+.|++...+|.. .+.+.+ .|.+...+...... ..... -....++++......+....
T Consensus 158 ---------------~~~~~~~~~~~~~~~--~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~ 219 (489)
T 3hu3_A 158 ---------------MRAVEFKVVETDPSP--YCIVAP-DTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEM 219 (489)
T ss_dssp ---------------TEEEEEEEEEEESSS--EEEECT-TCEEECCSSCBCHHHHHHHHTCCCGGGCCSCHHHHHHHHHH
T ss_pred ---------------CceEEEEEEeecCCC--ceEEcC-CeEEEEccCcccccccccccCCCCHHHcCCHHHHHHHHHHH
Confidence 578999999999853 334444 45555544211000 00000 01123455555444444444
Q ss_pred HhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCCCE
Q 002337 382 ILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPT 458 (934)
Q Consensus 382 il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~ 458 (934)
+..++.+|..+ +...+.+|||+||||||||++|+++|++++.+++.++|.++.+.+.++.+..++.+|..|....|+
T Consensus 220 i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~ 299 (489)
T 3hu3_A 220 VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299 (489)
T ss_dssp THHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCc
Confidence 45566666655 357788999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCCh
Q 002337 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPP 538 (934)
Q Consensus 459 IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~ 538 (934)
+|||||||.+.+.+.... ......+...|..+++ .......++||+|||+++.|++
T Consensus 300 iLfLDEId~l~~~~~~~~-----~~~~~~~~~~LL~~ld-------------------~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 300 IIFIDELDAIAPKREKTH-----GEVERRIVSQLLTLMD-------------------GLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp EEEEESHHHHCBCTTSCC-----CHHHHHHHHHHHHHHH-------------------HSCTTSCEEEEEEESCGGGBCG
T ss_pred EEEecchhhhcccccccc-----chHHHHHHHHHHHHhh-------------------ccccCCceEEEEecCCccccCH
Confidence 999999999987542211 1122233333333322 1122567999999999999999
Q ss_pred hhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 002337 539 TIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEV 616 (934)
Q Consensus 539 aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r~~~~~ 616 (934)
++++ ||...+.++.|+.++|.+||+.+++.... ..+ ..+..++..++||+++|+..||++|++.++++.....
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~----~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i 430 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADD----VDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTT----CCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cch----hhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 9998 89999999999999999999999876543 222 2368899999999999999999999999988754333
Q ss_pred cCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhcc
Q 002337 617 DKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKR 659 (934)
Q Consensus 617 ~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~~ 659 (934)
+..... ..........++++||..+++.++..
T Consensus 431 ~~~~~~-----------~~~~~~~~~~vt~edf~~Al~~~~ps 462 (489)
T 3hu3_A 431 DLEDET-----------IDAEVMNSLAVTMDDFRWALSQSNPS 462 (489)
T ss_dssp CTTCSS-----------CCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred cccccc-----------cchhhcccCcCCHHHHHHHHHhCCch
Confidence 221110 01112234578999999999887653
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.3e-39 Score=360.73 Aligned_cols=274 Identities=29% Similarity=0.536 Sum_probs=232.2
Q ss_pred hcCCHHHHHHHHHhhhcccccccCCCCCccchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHc-CCcEEEecCccc
Q 002337 642 QVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC-SLNFLSVKGPEL 720 (934)
Q Consensus 642 ~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~-~~~~i~v~~~~l 720 (934)
...+.++....|.... .+|+.++++|..+..++.++|||||||||||++|+++|+++ +.+|+.++++++
T Consensus 13 di~G~~~~k~~l~~~v----------~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAV----------ILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp GSCSCHHHHHHHHHHH----------HHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred HhcCHHHHHHHHHHHH----------HHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 3455566655555432 26788888888667788999999999999999999999999 899999999999
Q ss_pred cccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC
Q 002337 721 INMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 800 (934)
Q Consensus 721 ~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~ 800 (934)
.++|.|++++.++.+|..|+..+|+||||||+|.++++|+.. ..+...+++++++.+||++.....+++||+|||+|+
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC--CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc--cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 999999999999999999999999999999999999988643 345678999999999999865567899999999999
Q ss_pred CCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 002337 801 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVL 879 (934)
Q Consensus 801 ~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~ 879 (934)
.+|++++| ||+..+++++ |+.++|.+||+.++++.+.. .+.++..+|+. |+||+|+||.++|++|++.|+++.+.
T Consensus 161 ~ld~al~r--Rf~~~i~i~~-P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~-t~G~sgadl~~l~~~A~~~a~r~~~~ 236 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPL-PEPHARAAMFKLHLGTTQNSLTEADFRELGRK-TDGYSGADISIIVRDALMQPVRKVQS 236 (322)
T ss_dssp TSCHHHHH--TCCEEEECCC-CCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHT-CTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred cCCHHHHh--hcCeEEEeCC-cCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 9999999997 88999999999999887653 56789999999 69999999999999999999998764
Q ss_pred ccCCC---------C--------------CCc-------c--ccccCcccccHHHHHHHHHhhCCCcCHHHHHHHHHHHH
Q 002337 880 SSDSN---------S--------------DSS-------R--IDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRD 927 (934)
Q Consensus 880 ~~~~~---------~--------------~~~-------~--~~~~~~~~it~~df~~al~~~~psvs~~~l~~y~~~~~ 927 (934)
..... . ... . .+......|+++||++|+++++||+|++++++|++|++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~ 316 (322)
T 1xwi_A 237 ATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTE 316 (322)
T ss_dssp CSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 31100 0 000 0 01112347999999999999999999999999999999
Q ss_pred Hhcc
Q 002337 928 QFEG 931 (934)
Q Consensus 928 ~~~~ 931 (934)
+|+.
T Consensus 317 ~~~~ 320 (322)
T 1xwi_A 317 DFGQ 320 (322)
T ss_dssp TTCS
T ss_pred HHcc
Confidence 9975
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.4e-40 Score=402.71 Aligned_cols=256 Identities=39% Similarity=0.684 Sum_probs=222.6
Q ss_pred CccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEE
Q 002337 669 LPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVI 747 (934)
Q Consensus 669 ~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vl 747 (934)
+|+.+|++|. .++.+++|||||||||||||++|+++|++++.+|+.++++++.++|+|+++++++.+|+.|+..+||||
T Consensus 222 ~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsII 301 (806)
T 3cf2_A 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAII 301 (806)
T ss_dssp HHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEE
T ss_pred HHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEE
Confidence 6889999998 499999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHH
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYR 827 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r 827 (934)
||||+|+|+++|+..+ ++..++++++||++||++.. ..+|+||||||+|+.|||||+||||||+.|++++ |+.++|
T Consensus 302 fIDEiDal~~~r~~~~--~~~~~riv~~LL~~mdg~~~-~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~-Pd~~~R 377 (806)
T 3cf2_A 302 FIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATGR 377 (806)
T ss_dssp EEESGGGTCCTTTTCC--CTTHHHHHHHHHTHHHHCCG-GGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCC-CCHHHH
T ss_pred EEehhcccccccCCCC--ChHHHHHHHHHHHHHhcccc-cCCEEEEEecCChhhcCHHHhCCcccceEEecCC-CCHHHH
Confidence 9999999999987543 34568999999999999965 4679999999999999999999999999999997 899999
Q ss_pred HHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHH
Q 002337 828 ERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVL 907 (934)
Q Consensus 828 ~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al 907 (934)
.+||+.+++++++..++|+..+|.+ |+||+|+||.+||++|++.|++|.....+........+......|+++||..|+
T Consensus 378 ~~IL~~~l~~~~~~~dvdl~~lA~~-T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al 456 (806)
T 3cf2_A 378 LEILQIHTKNMKLADDVDLEQVANE-THGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWAL 456 (806)
T ss_dssp HHHHHHTCSSSEECTTCCHHHHHHH-CCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHH
T ss_pred HHHHHHHhcCCCCCcccCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHH
Confidence 9999999999999999999999999 699999999999999999999997654332211111112234579999999999
Q ss_pred HhhCCC-----------cCHHHHHHHHHHHHHh
Q 002337 908 RELSPS-----------LSMAELKKYELLRDQF 929 (934)
Q Consensus 908 ~~~~ps-----------vs~~~l~~y~~~~~~~ 929 (934)
+.++|| ++++++.-++..++.+
T Consensus 457 ~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l 489 (806)
T 3cf2_A 457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKREL 489 (806)
T ss_dssp SSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHH
T ss_pred HhCCCcccccccccCCCCCHHHhCCHHHHHHHH
Confidence 999876 3455555555555444
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=5.4e-39 Score=354.51 Aligned_cols=275 Identities=45% Similarity=0.785 Sum_probs=232.4
Q ss_pred cCCHHHHHHHHHhhhcccccccCCCCCccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccc
Q 002337 643 VMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 721 (934)
Q Consensus 643 ~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~ 721 (934)
.++.++....+.... .+|+.+++.|. .++.++.++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 17 i~G~~~~~~~l~~~v----------~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 17 IGGLEDVKRELQELV----------QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp SCSCHHHHHHHHHHH----------HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred hCCHHHHHHHHHHHH----------HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 455566555555432 25778888887 4889999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCC-CCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC
Q 002337 722 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 800 (934)
Q Consensus 722 ~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~-~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~ 800 (934)
+.|+|++++.++.+|+.|+...|+||||||+|.+.+.|+.. ++.++..++++++||..||++.. ..+|+||+|||+|+
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~-~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST-KKNVFIIGATNRPD 165 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT-TSSEEEEEEESCGG
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC-CCCEEEEEecCCcc
Confidence 99999999999999999999999999999999999877532 23344567899999999999864 46899999999999
Q ss_pred CCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002337 801 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 880 (934)
Q Consensus 801 ~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~ 880 (934)
.+|++++|||||+..|++++ |+.++|.+|++.++++.++..++++..++.. ++||+|+||.++|++|++.|+++.+..
T Consensus 166 ~ld~al~r~gRf~~~i~i~~-p~~~~r~~il~~~l~~~~~~~~~~~~~la~~-~~g~sg~dl~~l~~~a~~~a~~~~~~~ 243 (301)
T 3cf0_A 166 IIDPAILRPGRLDQLIYIPL-PDEKSRVAILKANLRKSPVAKDVDLEFLAKM-TNGFSGADLTEICQRACKLAIRESIES 243 (301)
T ss_dssp GSCGGGGSTTSSCEEEECCC-CCHHHHHHHHHHHHTTSCBCSSCCHHHHHHT-CSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHhcCCccceEEecCC-cCHHHHHHHHHHHHccCCCCccchHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999997 7899999999999999988889999999998 699999999999999999999887643
Q ss_pred cCCCCC-----Cc-cc--cccCcccccHHHHHHHHHhhCCCcCHHHHHHHHHHHHHhc
Q 002337 881 SDSNSD-----SS-RI--DQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFE 930 (934)
Q Consensus 881 ~~~~~~-----~~-~~--~~~~~~~it~~df~~al~~~~psvs~~~l~~y~~~~~~~~ 930 (934)
...... .. .. .......|+++||++|+++++||++.+++++|+.|+++|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 244 EIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred hhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 211000 00 00 0112247999999999999999999999999999999984
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=5.1e-38 Score=350.00 Aligned_cols=275 Identities=29% Similarity=0.549 Sum_probs=229.2
Q ss_pred hcCCHHHHHHHHHhhhcccccccCCCCCccchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccc
Q 002337 642 QVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 721 (934)
Q Consensus 642 ~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~ 721 (934)
..++.++....+.... .+|+.++++|..+..++.++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 19 di~G~~~~~~~l~~~i----------~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 19 DVAGLEGAKEALKEAV----------ILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp GSCSCHHHHHHHHHHT----------HHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred HhcChHHHHHHHHHHH----------HHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 3455666666665432 257778888887778889999999999999999999999999999999999999
Q ss_pred ccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCC
Q 002337 722 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL 801 (934)
Q Consensus 722 ~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~ 801 (934)
++|.|++++.++.+|..|+...|+||||||+|.+.++|+.. ..+..++++++++..|+++.....+++||+|||+|+.
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ 166 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 166 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGG
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccccCCceEEEEecCChhh
Confidence 99999999999999999999999999999999999888543 2345688999999999998656678999999999999
Q ss_pred CChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002337 802 IDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 880 (934)
Q Consensus 802 lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~ 880 (934)
||++++| ||+..+++++ |+.++|.+||+.++++.+.. .+.++..+++. ++||+|+||.++|++|++.|+++....
T Consensus 167 ld~al~~--Rf~~~i~~~~-p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~-t~g~sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 167 LDSAIRR--RFERRIYIPL-PDLAARTTMFEINVGDTPCVLTKEDYRTLGAM-TEGYSGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp SCHHHHH--HCCEEEECCC-CCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHT-TTTCCHHHHHHHHHHHTTHHHHHHHHC
T ss_pred CCHHHHc--ccCeEEEeCC-CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999 9999999997 89999999999999987653 56789999999 699999999999999999999987653
Q ss_pred cCCC-------C----------CCc---------cccccCcccccHHHHHHHHHhhCCCcCHHHHHHHHHHHHHhccC
Q 002337 881 SDSN-------S----------DSS---------RIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEGS 932 (934)
Q Consensus 881 ~~~~-------~----------~~~---------~~~~~~~~~it~~df~~al~~~~psvs~~~l~~y~~~~~~~~~~ 932 (934)
.... . ... ..+......||++||++|++.++||++.+++++|++|.++|+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 320 (322)
T 3eie_A 243 THFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320 (322)
T ss_dssp EEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC--
T ss_pred hhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 1100 0 000 00111235799999999999999999999999999999999764
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=8.1e-38 Score=340.38 Aligned_cols=241 Identities=47% Similarity=0.766 Sum_probs=199.0
Q ss_pred CccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEE
Q 002337 669 LPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVI 747 (934)
Q Consensus 669 ~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vl 747 (934)
+|+.+++.|. .++..+.|++|+||||||||++++++|++++.+++.+++.++.+.|.|++++.++.+|+.++...||++
T Consensus 28 ~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 28 APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVI 107 (274)
T ss_dssp HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeE
Confidence 6788888887 488889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHH
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYR 827 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r 827 (934)
|+||+|.+++.|+.. ..+...+++++++.+|+|... .+.++++|+||+|+.|||+++||||||+.|++++ |+.++|
T Consensus 108 ~~Deid~~~~~r~~~--~~~~~~~~~~~~l~~Lsgg~~-~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~-P~~~~r 183 (274)
T 2x8a_A 108 FFDEVDALCPRRSDR--ETGASVRVVNQLLTEMDGLEA-RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGL-PPPADR 183 (274)
T ss_dssp EEETCTTTCC-----------CTTHHHHHHHHHHTCCS-TTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCS-CCHHHH
T ss_pred eeehhhhhhcccCCC--cchHHHHHHHHHHHhhhcccc-cCCEEEEeecCChhhCCHhhcCcccCCeEEEeCC-cCHHHH
Confidence 999999998776532 122345788999999999864 5679999999999999999999999999999997 899999
Q ss_pred HHHHHHHHhc---CCCCcCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHH
Q 002337 828 ERVLKALTRK---FKLLEDVSLYSIAKKC-PPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDF 903 (934)
Q Consensus 828 ~~Il~~~~~~---~~~~~~~~l~~la~~~-t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df 903 (934)
.+||+.+++. .++..++++..+|..+ ++|||||||.++|++|++.|+++.+..... ........|+++||
T Consensus 184 ~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~------~~~~~~~~i~~~df 257 (274)
T 2x8a_A 184 LAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS------GNEKGELKVSHKHF 257 (274)
T ss_dssp HHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------------CCBCHHHH
T ss_pred HHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc------cccccCCeecHHHH
Confidence 9999999864 4567899999999873 369999999999999999999887543211 01123347999999
Q ss_pred HHHHHhhCCCcCHHHH
Q 002337 904 VKVLRELSPSLSMAEL 919 (934)
Q Consensus 904 ~~al~~~~psvs~~~l 919 (934)
++|+++++||++.+++
T Consensus 258 ~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 258 EEAFKKVRSSISKKDQ 273 (274)
T ss_dssp HHHHTTCCCCC-----
T ss_pred HHHHHHhcCCCChhhc
Confidence 9999999999999875
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.7e-37 Score=350.41 Aligned_cols=273 Identities=30% Similarity=0.559 Sum_probs=221.9
Q ss_pred cCCHHHHHHHHHhhhcccccccCCCCCccchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccc
Q 002337 643 VMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN 722 (934)
Q Consensus 643 ~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~ 722 (934)
.++.++....|.... .+|+.++++|..+..++.++|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 53 i~G~~~~~~~l~~~v----------~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 53 VAGLEGAKEALKEAV----------ILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp SCCGGGHHHHHHHHT----------HHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred hCCHHHHHHHHHHHH----------HHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 455555555554331 2577788888877788899999999999999999999999999999999999999
Q ss_pred cccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCC
Q 002337 723 MYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLI 802 (934)
Q Consensus 723 ~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~l 802 (934)
.|.|++++.++.+|..|+...|+||||||+|.+.++|+.. ..+...+++++||..|+++.....+|+||+|||+|+.|
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~l 200 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQL 200 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGS
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccC
Confidence 9999999999999999999999999999999999887643 34567899999999999986556789999999999999
Q ss_pred ChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCC-CcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 002337 803 DPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKL-LEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSS 881 (934)
Q Consensus 803 D~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~-~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~ 881 (934)
|++++| ||+..+++++ |+.++|.+||+.++++.+. ..+.++..||+. ++||+|+||.++|++|++.|+++.....
T Consensus 201 d~al~r--Rf~~~i~i~~-P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~-t~G~sg~dl~~l~~~A~~~a~~~~~~~~ 276 (355)
T 2qp9_X 201 DSAIRR--RFERRIYIPL-PDLAARTTMFEINVGDTPSVLTKEDYRTLGAM-TEGYSGSDIAVVVKDALMQPIRKIQSAT 276 (355)
T ss_dssp CHHHHH--TCCEEEECCC-CCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CHHHHc--ccCEEEEeCC-cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999 9999999997 8899999999999998765 356789999999 5999999999999999999999865321
Q ss_pred C-----CC------------CCCc---------cccccCcccccHHHHHHHHHhhCCCcCHHHHHHHHHHHHHhcc
Q 002337 882 D-----SN------------SDSS---------RIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEG 931 (934)
Q Consensus 882 ~-----~~------------~~~~---------~~~~~~~~~it~~df~~al~~~~psvs~~~l~~y~~~~~~~~~ 931 (934)
. .. .... ..+......|+++||++|++.++||++.+++++|++|+++|+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~ 352 (355)
T 2qp9_X 277 HFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 352 (355)
T ss_dssp EEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC-
T ss_pred hhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 0 00 0000 0011223579999999999999999999999999999999974
No 16
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=5.6e-37 Score=356.03 Aligned_cols=274 Identities=29% Similarity=0.537 Sum_probs=221.6
Q ss_pred hcCCHHHHHHHHHhhhcccccccCCCCCccchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHc-CCcEEEecCccc
Q 002337 642 QVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC-SLNFLSVKGPEL 720 (934)
Q Consensus 642 ~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~-~~~~i~v~~~~l 720 (934)
..++.++....|.... .+|+.++++|..+..++.++||+||||||||++|+++|+++ +.+|+.++++++
T Consensus 135 di~G~~~~k~~l~~~v----------~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l 204 (444)
T 2zan_A 135 DVAGLEGAKEALKEAV----------ILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 204 (444)
T ss_dssp GSCSCHHHHHHHHHHH----------THHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--
T ss_pred HhcCHHHHHHHHHHHH----------HHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH
Confidence 3455566555554431 25777788877666778999999999999999999999999 899999999999
Q ss_pred cccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC
Q 002337 721 INMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 800 (934)
Q Consensus 721 ~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~ 800 (934)
.+.|+|+++..++.+|..++...|+||||||+|.++++|+.. ..+...+++++||..|+++.....+|+||+|||+|+
T Consensus 205 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~ 282 (444)
T 2zan_A 205 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 282 (444)
T ss_dssp -------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC--CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGG
T ss_pred HhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc--cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcc
Confidence 999999999999999999999999999999999999887643 345678999999999999865567899999999999
Q ss_pred CCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCC-CcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 002337 801 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKL-LEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVL 879 (934)
Q Consensus 801 ~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~-~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~ 879 (934)
.+|++++| ||+..+++++ |+.+.|..||+.++++.+. ..+.++..+|+. ++||+|+||.++|++|++.|+++.+.
T Consensus 283 ~ld~al~r--Rf~~~i~i~~-P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~-t~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 283 VLDSAIRR--RFEKRIYIPL-PEAHARAAMFRLHLGSTQNSLTEADFQELGRK-TDGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp GSCHHHHT--TCCEEEECCC-CCHHHHHHHHHHHHTTSCEECCHHHHHHHHHH-TTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccCHHHHh--hcceEEEeCC-cCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 9999999997 8899999999999988765 356789999999 69999999999999999999998764
Q ss_pred ccCC------C-----------------CCC--------c-cccccCcccccHHHHHHHHHhhCCCcCHHHHHHHHHHHH
Q 002337 880 SSDS------N-----------------SDS--------S-RIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRD 927 (934)
Q Consensus 880 ~~~~------~-----------------~~~--------~-~~~~~~~~~it~~df~~al~~~~psvs~~~l~~y~~~~~ 927 (934)
.... . ... . ..+....++|+++||++|++.++||+|++++++|++|++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~ 438 (444)
T 2zan_A 359 ATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTE 438 (444)
T ss_dssp CSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTS
T ss_pred hhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3100 0 000 0 001112357999999999999999999999999999999
Q ss_pred Hhcc
Q 002337 928 QFEG 931 (934)
Q Consensus 928 ~~~~ 931 (934)
+|+.
T Consensus 439 ~~~~ 442 (444)
T 2zan_A 439 DFGQ 442 (444)
T ss_dssp SCTT
T ss_pred HHcC
Confidence 9965
No 17
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-35 Score=332.14 Aligned_cols=239 Identities=20% Similarity=0.260 Sum_probs=197.2
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+++|++....+..+.++.|+.+|+.| +.++++|||||||||||||++|+++|++++.+|+.++++++.+++.|+++
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese 227 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGS 227 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHH
Confidence 667777764444445567889999877 68899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|..|+.++||||||||+|++++.+..... +...++...+.+++. .+++.....
T Consensus 228 ~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~-----~~~~~~~~~l~~lL~----------------~lDg~~~~~ 286 (405)
T 4b4t_J 228 RMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSG-----GGDSEVQRTMLELLN----------------QLDGFETSK 286 (405)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSS-----GGGGHHHHHHHHHHH----------------HHHTTTCCC
T ss_pred HHHHHHHHHHHHhCCceEeeecchhhccCCCCCCC-----CCcHHHHHHHHHHHH----------------hhhccCCCC
Confidence 99999999999999999999999999986533221 122234444444432 123334467
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
+|+||||||+++.|||+++| ||++.|+++.|+.++|.+||+.++++... ..++ +++.+|..|+||+|+||..+
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dv----dl~~lA~~t~G~SGADi~~l 361 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGI----NLRKVAEKMNGCSGADVKGV 361 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSC----CHHHHHHHCCSCCHHHHHHH
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccC----CHHHHHHHCCCCCHHHHHHH
Confidence 89999999999999999999 99999999999999999999999987643 3333 36899999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhc
Q 002337 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKK 658 (934)
Q Consensus 601 ~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~ 658 (934)
|++|++.++++. ...++++||..|++++..
T Consensus 362 ~~eA~~~Air~~----------------------------~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 362 CTEAGMYALRER----------------------------RIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HHHHHHHHHHTT----------------------------CSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC----------------------------CCCcCHHHHHHHHHHHhC
Confidence 999999998742 234788999999988754
No 18
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=326.08 Aligned_cols=239 Identities=19% Similarity=0.259 Sum_probs=196.5
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+++|++.......+.++.|+.+|+.| +.++++|||||||||||||++|+++|++++.+|+.++++++.+++.|+++
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGese 261 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGP 261 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHH
Confidence 667788765555555566889999877 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|..|+..+||||||||+|+++..+...+... ..++...+..++. .+++.....
T Consensus 262 k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~-----~~~~~~~l~~LL~----------------~lDg~~~~~ 320 (437)
T 4b4t_I 262 RLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGG-----EREIQRTMLELLN----------------QLDGFDDRG 320 (437)
T ss_dssp HHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSS-----CCHHHHHHHHHHH----------------HHHHCCCSS
T ss_pred HHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCc-----cHHHHHHHHHHHH----------------HhhCcCCCC
Confidence 9999999999999999999999999998664332211 1233333333322 122333467
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
+|+||||||+++.||++++| ||++.|+++.||.++|.+||+.+++++.. ..++ +++.+|..|+||+|+||.++
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-~~dv----dl~~LA~~T~GfSGADI~~l 395 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-SEDV----NLETLVTTKDDLSGADIQAM 395 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-CSCC----CHHHHHHHCCSCCHHHHHHH
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-CCcC----CHHHHHHhCCCCCHHHHHHH
Confidence 89999999999999999999 99999999999999999999999987643 3333 36889999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhc
Q 002337 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKK 658 (934)
Q Consensus 601 ~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~ 658 (934)
|++|++.++++. ...++++||..|++++..
T Consensus 396 ~~eA~~~Air~~----------------------------~~~It~eDf~~Al~rv~~ 425 (437)
T 4b4t_I 396 CTEAGLLALRER----------------------------RMQVTAEDFKQAKERVMK 425 (437)
T ss_dssp HHHHHHHHHHTT----------------------------CSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC----------------------------CCccCHHHHHHHHHHHhC
Confidence 999999998752 234788999999988754
No 19
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-34 Score=329.05 Aligned_cols=242 Identities=19% Similarity=0.280 Sum_probs=198.1
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+++|++....+....++.|+.+|..| +.++++|||||||||||||++|+++|++++.+|+.++++++.+++.|+++
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese 260 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGA 260 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHH
Confidence 667777765555555678999999877 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|..|+.++||||||||+|++++.+...+ .....++...+..++.. +++.....
T Consensus 261 ~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~-----~~~~~~~~~~~~~lL~~----------------ldg~~~~~ 319 (434)
T 4b4t_M 261 KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-----KSGDREVQRTMLELLNQ----------------LDGFSSDD 319 (434)
T ss_dssp HHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGG-----GGTTHHHHHHHHHHHHH----------------HTTSCSSC
T ss_pred HHHHHHHHHHHhcCCeEEeecchhhhhhccCCCC-----CCCchHHHHHHHHHHHH----------------hhccCCCC
Confidence 9999999999999999999999999998653221 11223334444444321 22223367
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
+|+||||||+++.|||+++| ||++.|+++.|+.++|.+||+.++++... ..++ .++.+|..|+||+|+||.++
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dv----dl~~lA~~t~G~sGADi~~l 394 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDI----NWQELARSTDEFNGAQLKAV 394 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCC----CHHHHHHHCSSCCHHHHHHH
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcC----CHHHHHHhCCCCCHHHHHHH
Confidence 89999999999999999988 99999999999999999999999987643 3333 36889999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhcccc
Q 002337 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNA 661 (934)
Q Consensus 601 ~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~~~~ 661 (934)
|++|++.++++. ...++++||..|+++++....
T Consensus 395 ~~eA~~~a~r~~----------------------------~~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 395 TVEAGMIALRNG----------------------------QSSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp HHHHHHHHHHHT----------------------------CSSBCHHHHHHHHHSCSSSCC
T ss_pred HHHHHHHHHHcC----------------------------CCCcCHHHHHHHHHHHhCCCC
Confidence 999999998752 234788999999998765443
No 20
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=321.93 Aligned_cols=238 Identities=18% Similarity=0.230 Sum_probs=194.7
Q ss_pred CCCcCCchHHHHHHH-HHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccch
Q 002337 366 NDFVPLQGDTVKILA-SILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKT 441 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~-~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~ 441 (934)
.+++|++. ..+.|. .++.|+.+|+.| ++++++|||||||||||||++|+++|++++.+|+.++++++.+++.|++
T Consensus 209 ~DIgGl~~-~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGes 287 (467)
T 4b4t_H 209 SDVGGCKD-QIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEG 287 (467)
T ss_dssp SSCTTCHH-HHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHH
T ss_pred HHhccHHH-HHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHH
Confidence 66777775 444554 456889999876 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhc
Q 002337 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (934)
Q Consensus 442 e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~ 521 (934)
+..++.+|..|+..+||||||||+|.++..+...+. +....+...+..++.+ +++....
T Consensus 288 ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~-----~~~~~~~~~l~~lL~~----------------lDg~~~~ 346 (467)
T 4b4t_H 288 ARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGA-----GGDNEVQRTMLELITQ----------------LDGFDPR 346 (467)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSC-----GGGGHHHHHHHHHHHH----------------HHSSCCT
T ss_pred HHHHHHHHHHHHhcCCceEeecccccccccccCcCC-----CccHHHHHHHHHHHHH----------------hhccCCC
Confidence 999999999999999999999999999986643321 1122333333333221 2223346
Q ss_pred ccEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHH
Q 002337 522 QQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHA 599 (934)
Q Consensus 522 ~~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~ 599 (934)
.+|+||||||+++.||++++| ||++.|+++.|+.++|.+||+.++++... ..++ .++.+|..|+||+|+||..
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dv----dl~~LA~~T~GfSGADI~~ 421 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGI----RWELISRLCPNSTGAELRS 421 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSC----CHHHHHHHCCSCCHHHHHH
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCC----CHHHHHHHCCCCCHHHHHH
Confidence 789999999999999999999 99999999999999999999999987643 3333 3688999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhc
Q 002337 600 LVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKK 658 (934)
Q Consensus 600 L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~ 658 (934)
||++|++.++++. ...++++||..|++++..
T Consensus 422 l~~eAa~~Air~~----------------------------~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 422 VCTEAGMFAIRAR----------------------------RKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp HHHHHHHHHHHHT----------------------------CSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC----------------------------CCccCHHHHHHHHHHHhc
Confidence 9999999998752 234678999999987753
No 21
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=321.27 Aligned_cols=239 Identities=19% Similarity=0.283 Sum_probs=195.8
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+++|++.........++.|+.+|..| ++++++|||||||||||||++|+++|+++|.+++.++++++++++.|+++
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese 260 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESA 260 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHH
Confidence 667777765555555667889999877 68899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|..|+.++||||||||+|++++.+...+... ..++...+..++. .+++.....
T Consensus 261 ~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~-----~~~~~~~l~~lL~----------------~lDg~~~~~ 319 (437)
T 4b4t_L 261 RIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSA-----DREIQRTLMELLT----------------QMDGFDNLG 319 (437)
T ss_dssp HHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSS-----TTHHHHHHHHHHH----------------HHHSSSCTT
T ss_pred HHHHHHHHHHHhcCCceeeeecccccccccccCCCCc-----chHHHHHHHHHHH----------------HhhcccCCC
Confidence 9999999999999999999999999998764433222 1233333333322 122233367
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
+|+||||||+++.|||+++| ||++.|++|.|+.++|.+||+.++++... ..++ +++.+|..|+||+|+||..+
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~----dl~~lA~~t~G~sGADi~~l 394 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEF----DFEAAVKMSDGFNGADIRNC 394 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCC----CHHHHHHTCCSCCHHHHHHH
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-Cccc----CHHHHHHhCCCCCHHHHHHH
Confidence 89999999999999999988 59999999999999999999999987643 3333 36889999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhc
Q 002337 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKK 658 (934)
Q Consensus 601 ~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~ 658 (934)
|++|++.++++. ...++++||..|++++..
T Consensus 395 ~~eA~~~air~~----------------------------~~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 395 ATEAGFFAIRDD----------------------------RDHINPDDLMKAVRKVAE 424 (437)
T ss_dssp HHHHHHHHHHTT----------------------------CSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC----------------------------CCCCCHHHHHHHHHHHHh
Confidence 999999998642 224788999999988754
No 22
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=313.90 Aligned_cols=237 Identities=18% Similarity=0.251 Sum_probs=192.9
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+++|++....+....+..|+.+|..| +.++++|||||||||||||++|+++|++++.+++.++++++.+++.|+++
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e 251 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGP 251 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhH
Confidence 667777754444445556789999776 68899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|..|+.++|||+||||+|.++..+.......+ .+...++.+++. .+++.....
T Consensus 252 ~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~-----~~~~r~l~~lL~----------------~ldg~~~~~ 310 (428)
T 4b4t_K 252 RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSD-----REVQRILIELLT----------------QMDGFDQST 310 (428)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCC-----CHHHHHHHHHHH----------------HHHHSCSSC
T ss_pred HHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCC-----hHHHHHHHHHHH----------------HhhCCCCCC
Confidence 99999999999999999999999999986643322111 122233333322 223333467
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcC-CCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMG-PLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHA 599 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~-~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~ 599 (934)
+|+||||||+++.|||+++| ||++.|++| .|+.++|.+||+.+++++.. ..++ +++.+|..|+||+|+||..
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l-~~~~----dl~~lA~~t~G~sgadi~~ 385 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL-APEA----DLDSLIIRNDSLSGAVIAA 385 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB-CTTC----CHHHHHHHTTTCCHHHHHH
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC-Cccc----CHHHHHHHCCCCCHHHHHH
Confidence 89999999999999999998 899999996 79999999999999987643 3333 3689999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhh
Q 002337 600 LVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERS 656 (934)
Q Consensus 600 L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~ 656 (934)
+|++|++.++++. ...++++||..|+...
T Consensus 386 l~~eA~~~a~r~~----------------------------~~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 386 IMQEAGLRAVRKN----------------------------RYVILQSDLEEAYATQ 414 (428)
T ss_dssp HHHHHHHHHHHTT----------------------------CSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC----------------------------CCCCCHHHHHHHHHHh
Confidence 9999999998752 2347889999998764
No 23
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=6.9e-33 Score=323.99 Aligned_cols=251 Identities=40% Similarity=0.683 Sum_probs=208.3
Q ss_pred CccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEE
Q 002337 669 LPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVI 747 (934)
Q Consensus 669 ~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vl 747 (934)
+++.++++|. .+..++.++|||||||||||++|+++|++++.+|+.++++++.+.|.|+++..++.+|..|....|++|
T Consensus 222 ~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iL 301 (489)
T 3hu3_A 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAII 301 (489)
T ss_dssp HHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEE
Confidence 4566777777 478889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHH
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYR 827 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r 827 (934)
||||||.+.++|+. ..+....+++++||..|++... ..+++||+|||+++.||++++|+|||+..|++++ |+.++|
T Consensus 302 fLDEId~l~~~~~~--~~~~~~~~~~~~LL~~ld~~~~-~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~-P~~~eR 377 (489)
T 3hu3_A 302 FIDELDAIAPKREK--THGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATGR 377 (489)
T ss_dssp EEESHHHHCBCTTS--CCCHHHHHHHHHHHHHHHHSCT-TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCC-CCHHHH
T ss_pred Eecchhhhcccccc--ccchHHHHHHHHHHHHhhcccc-CCceEEEEecCCccccCHHHhCCCcCceEEEeCC-CCHHHH
Confidence 99999999998754 3345678899999999998764 4689999999999999999999999999999997 789999
Q ss_pred HHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHH
Q 002337 828 ERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVL 907 (934)
Q Consensus 828 ~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al 907 (934)
.+||+.+++.+++..++++..++.. ++||+|+||.+||++|++.|+++.....+........+......|+++||++|+
T Consensus 378 ~~IL~~~~~~~~l~~~~~l~~la~~-t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al 456 (489)
T 3hu3_A 378 LEILQIHTKNMKLADDVDLEQVANE-THGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWAL 456 (489)
T ss_dssp HHHHHHHTTTSCBCTTCCHHHHHHT-CTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHH
T ss_pred HHHHHHHHhcCCCcchhhHHHHHHH-ccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHH
Confidence 9999999999999999999999999 699999999999999999999887554332211111111233579999999999
Q ss_pred HhhCCC-----------cCHHHHHHHHH
Q 002337 908 RELSPS-----------LSMAELKKYEL 924 (934)
Q Consensus 908 ~~~~ps-----------vs~~~l~~y~~ 924 (934)
++++|| |+|+++.-|..
T Consensus 457 ~~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 457 SQSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp TSHHHHHHHGGGC---------------
T ss_pred HhCCchhhhcccccCCCCCHHHcCCCcc
Confidence 987654 56777766644
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=310.92 Aligned_cols=269 Identities=32% Similarity=0.547 Sum_probs=216.0
Q ss_pred cCCHHHHHHHHHhhhcccccccCCCCCccchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccc
Q 002337 643 VMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN 722 (934)
Q Consensus 643 ~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~ 722 (934)
.++.++....+.... .+|+.++++|.....++.++||+||||||||++|+++|++++.+|+.++++++.+
T Consensus 86 i~G~~~~~~~l~~~i----------~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 86 IAGVEFAKATIKEIV----------VWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp SCSCHHHHHHHHHHT----------HHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred hCChHHHHHHHHHHH----------HHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 455565555554432 2455556666544466889999999999999999999999999999999999999
Q ss_pred cccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcC-CCCCEEEEEEcCCCCC
Q 002337 723 MYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND-SSQDLFIIGASNRPDL 801 (934)
Q Consensus 723 ~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~-~~~~v~vI~aTNrp~~ 801 (934)
.|.|+.+..++.+|..++...|+||||||+|.+.++|+.. ......++++++|..|++... ...+++||+|||+++.
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~ 233 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE 233 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC--cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhh
Confidence 9999999999999999999999999999999999887532 234567899999999998753 2467999999999999
Q ss_pred CChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 002337 802 IDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLS 880 (934)
Q Consensus 802 lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~ 880 (934)
+|++++| ||+..+++++ |+.++|.+|++.++++.... .+.++..+++. ++||+|+||.+||++|++.++++....
T Consensus 234 l~~~l~~--Rf~~~i~i~~-p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~-t~G~s~~dl~~l~~~a~~~~ir~l~~~ 309 (357)
T 3d8b_A 234 IDEAARR--RLVKRLYIPL-PEASARKQIVINLMSKEQCCLSEEEIEQIVQQ-SDAFSGADMTQLCREASLGPIRSLQTA 309 (357)
T ss_dssp BCHHHHT--TCCEEEECCC-CCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHH-TTTCCHHHHHHHHHHHHTHHHHHCCC-
T ss_pred CCHHHHh--hCceEEEeCC-cCHHHHHHHHHHHHhhcCCCccHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999 9999999997 78999999999999876532 34568889999 599999999999999999999864211
Q ss_pred cCCCCCCccccccCcccccHHHHHHHHHhhCCCcCHHHHHHHHHHHHHhccC
Q 002337 881 SDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEGS 932 (934)
Q Consensus 881 ~~~~~~~~~~~~~~~~~it~~df~~al~~~~psvs~~~l~~y~~~~~~~~~~ 932 (934)
.. ......+...|+.+||.+|+++++||++.+++++|++|.++|+.+
T Consensus 310 ~~-----~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 310 DI-----ATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp --------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred hh-----ccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 10 011112345799999999999999999999999999999999764
No 25
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.98 E-value=1.2e-31 Score=311.10 Aligned_cols=219 Identities=39% Similarity=0.731 Sum_probs=190.7
Q ss_pred hHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccc
Q 002337 674 KDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDEL 752 (934)
Q Consensus 674 ~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEi 752 (934)
++.|. .+...+.++||+||||||||++|+++|++.+.+|+.++++++...|+|..+..++.+|..|+...||||||||+
T Consensus 38 ~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEi 117 (476)
T 2ce7_A 38 PSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEI 117 (476)
T ss_dssp THHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETG
T ss_pred hHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEech
Confidence 34454 47778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCC-CCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHH
Q 002337 753 DSLAPARGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVL 831 (934)
Q Consensus 753 d~l~~~r~~~-~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il 831 (934)
|.+.++|+.. +.......+++++||.+||++.. ..+|+||+|||+|+.+||+++||||||+.|++++ |+.++|.+|+
T Consensus 118 d~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~-~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~-Pd~~~R~~Il 195 (476)
T 2ce7_A 118 DAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS-KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDP-PDMLGRKKIL 195 (476)
T ss_dssp GGTCCC---------CHHHHHHHHHHHHHHHSCG-GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCC-CCHHHHHHHH
T ss_pred hhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC-CCCEEEEEecCChhhhchhhcccCcceeEeecCC-CCHHHHHHHH
Confidence 9999888632 11122346789999999998754 4679999999999999999999999999999996 8899999999
Q ss_pred HHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhhC
Q 002337 832 KALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELS 911 (934)
Q Consensus 832 ~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 911 (934)
+.++++.++..++++..+|.. ++||+|+||.++|++|++.|.++. ...|+.+||.+|+..+.
T Consensus 196 ~~~~~~~~l~~~v~l~~la~~-t~G~sgadL~~lv~~Aal~A~~~~-----------------~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 196 EIHTRNKPLAEDVNLEIIAKR-TPGFVGADLENLVNEAALLAAREG-----------------RDKITMKDFEEAIDRVI 257 (476)
T ss_dssp HHHHTTSCBCTTCCHHHHHHT-CTTCCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHHHHHC
T ss_pred HHHHHhCCCcchhhHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHcC-----------------CCeecHHHHHHHHHHHh
Confidence 999999998889999999999 699999999999999999987642 13589999999999886
Q ss_pred C
Q 002337 912 P 912 (934)
Q Consensus 912 p 912 (934)
+
T Consensus 258 ~ 258 (476)
T 2ce7_A 258 A 258 (476)
T ss_dssp -
T ss_pred c
Confidence 4
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=4.3e-32 Score=297.95 Aligned_cols=269 Identities=33% Similarity=0.557 Sum_probs=210.9
Q ss_pred hcCCHHHHHHHHHhhhcccccccCCCCCccchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccc
Q 002337 642 QVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 721 (934)
Q Consensus 642 ~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~ 721 (934)
..++.++....+.... .+|..++++|.....++.++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 22 ~i~G~~~~~~~l~~~i----------~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMV----------ILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp GSCCCHHHHHHHHHHT----------HHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred HhCChHHHHHHHHHHH----------HhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 3456666656555432 134555666553334578999999999999999999999999999999999999
Q ss_pred ccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCC--CCCEEEEEEcCCC
Q 002337 722 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDS--SQDLFIIGASNRP 799 (934)
Q Consensus 722 ~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~--~~~v~vI~aTNrp 799 (934)
+.|.|+.+..++.+|..++...|+||||||+|.+...+.... .....++.++++..+++.... ..+++||+|||+|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE--HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc--chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 999999999999999999999999999999999998875432 234577889999999987542 2569999999999
Q ss_pred CCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 002337 800 DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKV 878 (934)
Q Consensus 800 ~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~ 878 (934)
+.+|++++| ||+..+++++ |+.++|..|++.++++.+.. .+.++..+++. +.||+|+||.++|++|++.|+++..
T Consensus 170 ~~l~~~l~~--R~~~~i~~~~-p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~-~~g~~~~~l~~l~~~a~~~a~r~~~ 245 (297)
T 3b9p_A 170 QELDEAALR--RFTKRVYVSL-PDEQTRELLLNRLLQKQGSPLDTEALRRLAKI-TDGYSGSDLTALAKDAALEPIRELN 245 (297)
T ss_dssp GGBCHHHHH--HCCEEEECCC-CCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHH-TTTCCHHHHHHHHHHHTTHHHHTCC
T ss_pred hhCCHHHHh--hCCeEEEeCC-cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 9999999997 78999999999999876542 34467889998 5999999999999999999997642
Q ss_pred cccCCCCCCccccccCcccccHHHHHHHHHhhCCCcCHHHHHHHHHHHHHhcc
Q 002337 879 LSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEG 931 (934)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~psvs~~~l~~y~~~~~~~~~ 931 (934)
..... .........|+.+||.+|++.++||++.++++.|++|.++|+.
T Consensus 246 ~~~~~-----~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~ 293 (297)
T 3b9p_A 246 VEQVK-----CLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGD 293 (297)
T ss_dssp -------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-----
T ss_pred hhhcc-----cccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 11110 0111223479999999999999999999999999999999864
No 27
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.97 E-value=5.5e-30 Score=316.83 Aligned_cols=418 Identities=15% Similarity=0.238 Sum_probs=271.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEecCcccc--ccccchHHHHHHHHHHhhcCCCEEEEEc
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMA--SSERKTSAALAQAFNTAQSYSPTILLLR 463 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~el----------g~~~~~I~~~~L~~--~~~g~~e~~L~~~f~~A~~~~P~IL~ID 463 (934)
.+.++||+||||||||++++++|+.+ +..++.+++..+.. .+.+..+..++.+|..+....++|+|||
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~ID 285 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID 285 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEET
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34679999999999999999999987 66788888887763 4567888999999999988789999999
Q ss_pred chhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCC-----CCCCh
Q 002337 464 DFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-----EGLPP 538 (934)
Q Consensus 464 EID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~-----~~Ld~ 538 (934)
|+|.+.+.... .....+....|..+++ .+.+.+|++|+.+ ..+++
T Consensus 286 Ei~~l~~~~~~-------~~~~~~~~~~L~~~l~-----------------------~~~~~~I~at~~~~~~~~~~~d~ 335 (758)
T 1r6b_X 286 EIHTIIGAGAA-------SGGQVDAANLIKPLLS-----------------------SGKIRVIGSTTYQEFSNIFEKDR 335 (758)
T ss_dssp TTTTTTTSCCS-------SSCHHHHHHHHSSCSS-----------------------SCCCEEEEEECHHHHHCCCCCTT
T ss_pred chHHHhhcCCC-------CcchHHHHHHHHHHHh-----------------------CCCeEEEEEeCchHHhhhhhcCH
Confidence 99998763211 0112334444433322 4567889999864 35789
Q ss_pred hhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC-----CChHHHHHHHHHHHHHHHHhhc
Q 002337 539 TIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG-----FMPRDLHALVADAGANLIRKSN 613 (934)
Q Consensus 539 aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G-----fv~~DL~~L~~~A~~~ai~r~~ 613 (934)
++.+||. .+.++.|+.++|.+|++.+.......+.-.-.+..+..++..+.| +.+..+..++.+|+..+.....
T Consensus 336 aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~ 414 (758)
T 1r6b_X 336 ALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPV 414 (758)
T ss_dssp SSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSS
T ss_pred HHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccc
Confidence 9999997 799999999999999998775432111111224455666665554 5667788888887644322100
Q ss_pred ccccCCCCCchhhhhhhhccC--c----ch-----------hhhhhcCCHHHHHHHHHhhhcccccccCCCCCccchhHH
Q 002337 614 SEVDKNEPGESDLTAKVAHND--N----SS-----------IAATQVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDL 676 (934)
Q Consensus 614 ~~~~~~~~~~~~l~~~~~~~~--~----~~-----------~~~~~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~ 676 (934)
.. .........+...+.... . .. ......+++++....+..... .
T Consensus 415 ~~-~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~-----------------~ 476 (758)
T 1r6b_X 415 SK-RKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIK-----------------M 476 (758)
T ss_dssp CC-CCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHH-----------------H
T ss_pred cc-cCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHH-----------------H
Confidence 00 000001111111110000 0 00 000111222222111111100 0
Q ss_pred hhcCC----CCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccccc------------ccchhhhhhHHHHHHHH
Q 002337 677 FSSGL----RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM------------YIGESEKNVRDIFQKAR 740 (934)
Q Consensus 677 ~~~~~----~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~------------~~Gese~~v~~lf~~A~ 740 (934)
...|+ ++..++||+||||||||++|+++|+.++.+|+.++++++... |+|..+.. .+....+
T Consensus 477 ~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~--~l~~~~~ 554 (758)
T 1r6b_X 477 ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGG--LLTDAVI 554 (758)
T ss_dssp HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTT--HHHHHHH
T ss_pred HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccc--hHHHHHH
Confidence 11122 233479999999999999999999999999999999887653 55543332 3455556
Q ss_pred hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcC--------CCCCEEEEEEcCCCC------------
Q 002337 741 SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND--------SSQDLFIIGASNRPD------------ 800 (934)
Q Consensus 741 ~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~--------~~~~v~vI~aTNrp~------------ 800 (934)
...++||||||+|.+. ..+++.|+..||.-.- ...+++||+|||.+.
T Consensus 555 ~~~~~vl~lDEi~~~~-------------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~ 621 (758)
T 1r6b_X 555 KHPHAVLLLDEIEKAH-------------PDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIH 621 (758)
T ss_dssp HCSSEEEEEETGGGSC-------------HHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------
T ss_pred hCCCcEEEEeCccccC-------------HHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccc
Confidence 6678999999999874 2467777777763210 125689999999864
Q ss_pred -------------CCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcC-----------CCCcCCCHHHHHhh-CCC
Q 002337 801 -------------LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF-----------KLLEDVSLYSIAKK-CPP 855 (934)
Q Consensus 801 -------------~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~-----------~~~~~~~l~~la~~-~t~ 855 (934)
.++|++++ |||..|.|+ |++.+.+..|++.++++. .+.+ .-+..+++. .+.
T Consensus 622 ~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~-~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~-~a~~~l~~~~~~~ 697 (758)
T 1r6b_X 622 QDNSTDAMEEIKKIFTPEFRN--RLDNIIWFD-HLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQ-EARNWLAEKGYDR 697 (758)
T ss_dssp ------CHHHHHHHSCHHHHT--TCSEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECH-HHHHHHHHHHCBT
T ss_pred cchHHHHHHHHHHhcCHHHHh--hCCcceeeC-CCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCH-HHHHHHHHhCCCc
Confidence 57899998 999999999 588999999998887643 1111 124556653 245
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhccc
Q 002337 856 NFTGADMYALCADAWFHAAKRKVLSS 881 (934)
Q Consensus 856 g~sgaDl~~l~~~A~~~A~~r~~~~~ 881 (934)
+|.+++|.++++.+...++-+.+...
T Consensus 698 ~~g~R~l~~~i~~~~~~~l~~~~l~~ 723 (758)
T 1r6b_X 698 AMGARPMARVIQDNLKKPLANELLFG 723 (758)
T ss_dssp TTBTTTHHHHHHHHHTHHHHHHHHHS
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 67789999999999988776666543
No 28
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=5e-30 Score=275.83 Aligned_cols=214 Identities=41% Similarity=0.741 Sum_probs=188.4
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCC
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR 759 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r 759 (934)
+...+.+++|+||||||||++|+++|++++.+++.++++++...+.|+.++.++.+|+.|+...|+++||||+|.+.+++
T Consensus 41 ~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~ 120 (257)
T 1lv7_A 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 120 (257)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCC
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCC
Confidence 56667899999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCC-CCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcC
Q 002337 760 GASG-DSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF 838 (934)
Q Consensus 760 ~~~~-~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~ 838 (934)
+... .......++++++|.+|+++.. ..+++||+|||+|+.+|++++|+|||++.+++++ |+.++|.+|++.++++.
T Consensus 121 ~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~-P~~~~r~~il~~~~~~~ 198 (257)
T 1lv7_A 121 GAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL-PDVRGREQILKVHMRRV 198 (257)
T ss_dssp STTSCCTTCHHHHHHHHHHHHHHTCCS-SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCC-CCHHHHHHHHHHHHTTS
T ss_pred CCCcCCCchHHHHHHHHHHHHhhCccc-CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCC-CCHHHHHHHHHHHHhcC
Confidence 5321 1122345789999999999864 4679999999999999999999999999999997 78899999999999999
Q ss_pred CCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhhCCC
Q 002337 839 KLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPS 913 (934)
Q Consensus 839 ~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 913 (934)
++..++++..++.. ++||+++||.++|++|+..|.++. ...|+.+||++|++.+..+
T Consensus 199 ~l~~~~~~~~la~~-~~G~~~~dl~~l~~~a~~~a~~~~-----------------~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 199 PLAPDIDAAIIARG-TPGFSGADLANLVNEAALFAARGN-----------------KRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp CBCTTCCHHHHHHT-CTTCCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHHHHHTTC
T ss_pred CCCccccHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhC-----------------CCcccHHHHHHHHHHHhcC
Confidence 98889999999998 599999999999999999987652 1369999999999987653
No 29
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.97 E-value=3.1e-29 Score=309.94 Aligned_cols=419 Identities=14% Similarity=0.226 Sum_probs=256.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchh
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFD 466 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el----------g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID 466 (934)
..++||+||||||||++|+++|+.+ +.+++.+++ ...+.|+.+..++.+|..+....|+|||||
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--- 274 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--- 274 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC---
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc---
Confidence 3569999999999999999999997 788888887 445567788899999999998889999999
Q ss_pred hccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-----CCChhhh
Q 002337 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPTIR 541 (934)
Q Consensus 467 ~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~-----~Ld~aLr 541 (934)
.. ......|...+ ..+.+.+|++||..+ .++++++
T Consensus 275 --~~---------------~~~~~~L~~~l-----------------------~~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 275 --AA---------------IDASNILKPSL-----------------------ARGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp --C-----------------------CCCT-----------------------TSSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred --Cc---------------hhHHHHHHHHH-----------------------hcCCEEEEeCCChHHHHHHhhccHHHH
Confidence 11 01112222221 156789999999988 6999999
Q ss_pred cccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhc-----CCCChHHHHHHHHHHHHHHHHhhcccc
Q 002337 542 RCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQT-----SGFMPRDLHALVADAGANLIRKSNSEV 616 (934)
Q Consensus 542 rrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t-----~Gfv~~DL~~L~~~A~~~ai~r~~~~~ 616 (934)
+|| ..+.++.|+.+++.+|++.+.......+.-.-.+..+..++..+ .++.+.+...++.+|+..+..+.....
T Consensus 315 rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p 393 (758)
T 3pxi_A 315 RRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTP 393 (758)
T ss_dssp HSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhccCCC
Confidence 999 57999999999999999988765433221112244455554443 357778888888877655432211100
Q ss_pred cC----------------------CCCCchhhh-------hhhhccCcch----hhhhhcCCHHHHHHHHHhhhcccccc
Q 002337 617 DK----------------------NEPGESDLT-------AKVAHNDNSS----IAATQVMGKEDLVKAMERSKKRNASA 663 (934)
Q Consensus 617 ~~----------------------~~~~~~~l~-------~~~~~~~~~~----~~~~~~i~~ed~~~aL~~~k~~~~~~ 663 (934)
.. +......+. .........+ ......++.+++...+..........
T Consensus 394 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~i~~~v~~~~~ip~~~ 473 (758)
T 3pxi_A 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSK 473 (758)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC---CCTHHHHHHHHTTC------
T ss_pred cchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHHHHHhCCChHH
Confidence 00 000000000 0000000000 01122345555555444321100000
Q ss_pred c-----CCC-CC-------ccchh-------HH---hhcCCC----CCCcceecCCCCCcchHHHHHHHHHc---CCcEE
Q 002337 664 L-----GAP-KL-------PLLHK-------DL---FSSGLR----KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFL 713 (934)
Q Consensus 664 i-----~~p-k~-------pl~~~-------~~---~~~~~~----~~~~iLl~GppGtGKT~lakalA~~~---~~~~i 713 (934)
+ ... .+ -.-.. .. ...+.. +..++||+||||||||++|+++|..+ +.+|+
T Consensus 474 ~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i 553 (758)
T 3pxi_A 474 IAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMI 553 (758)
T ss_dssp -CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEE
T ss_pred hhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceE
Confidence 0 000 00 00000 00 111222 12269999999999999999999987 67899
Q ss_pred EecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCc--------C
Q 002337 714 SVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------D 785 (934)
Q Consensus 714 ~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~--------~ 785 (934)
.++++++...+... ...++...+...++||||||||.+. ..+.+.|+..||.-. .
T Consensus 554 ~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~~-------------~~~~~~Ll~~le~g~~~~~~g~~~ 616 (758)
T 3pxi_A 554 RIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKAH-------------PDVFNILLQVLEDGRLTDSKGRTV 616 (758)
T ss_dssp EEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSC-------------HHHHHHHHHHHHHSBCC-----CC
T ss_pred EEechhcccccccc----cchhhHHHHhCCCeEEEEeCccccC-------------HHHHHHHHHHhccCeEEcCCCCEe
Confidence 99999998877654 2233445556677999999999884 246666666666421 1
Q ss_pred CCCCEEEEEEcCCCCC------------CChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcC-------CCCcCC--
Q 002337 786 SSQDLFIIGASNRPDL------------IDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF-------KLLEDV-- 844 (934)
Q Consensus 786 ~~~~v~vI~aTNrp~~------------lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~-------~~~~~~-- 844 (934)
...+++||+|||.+.. +.|+++. |||..|+|+ |++.+.+..|++.+++++ .....+
T Consensus 617 ~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~-~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 693 (758)
T 3pxi_A 617 DFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFH-SLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTD 693 (758)
T ss_dssp BCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC---CHHHHHHHHHHHHHHHHHHHHTTTCEEEECH
T ss_pred ccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecC-CCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECH
Confidence 2346899999997664 7889988 999999999 588999999998877653 111112
Q ss_pred -CHHHHHhh-CCCCCCHHHHHHHHHHHHHHHHHHHhcccC
Q 002337 845 -SLYSIAKK-CPPNFTGADMYALCADAWFHAAKRKVLSSD 882 (934)
Q Consensus 845 -~l~~la~~-~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~ 882 (934)
-+..+++. ....+..++|+++++++...++.+.+....
T Consensus 694 ~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l~~~ 733 (758)
T 3pxi_A 694 AAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGN 733 (758)
T ss_dssp HHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHcCC
Confidence 24566654 234567789999999999888877765544
No 30
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=3.7e-30 Score=280.72 Aligned_cols=260 Identities=41% Similarity=0.669 Sum_probs=207.9
Q ss_pred hcCCHHHHHHHHHhhhcccccccCCCCCccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccc
Q 002337 642 QVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 720 (934)
Q Consensus 642 ~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l 720 (934)
..++.++....+.... .+++.+++.+. .++.++.++||+||||||||++|+++|+.++.+++.++++++
T Consensus 18 ~i~G~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVV----------ELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp GSCSCHHHHHHHHHHT----------HHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred HhcCHHHHHHHHHHHH----------HHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 3456666655555432 23556677776 488889999999999999999999999999999999999999
Q ss_pred cccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCC-chhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCC
Q 002337 721 INMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDS-GGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 799 (934)
Q Consensus 721 ~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~-~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp 799 (934)
.+.|.|+.+..++.+|..++...|+||||||+|.+.++|...... .....+.+.+++.++++... ..+++||+|||++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA-RGDVKIIGATNRP 166 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS-SSSEEEEEECSCG
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC-CCCEEEEEeCCCc
Confidence 999999999999999999999999999999999999887643222 22345778888999988754 4679999999999
Q ss_pred CCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 002337 800 DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVL 879 (934)
Q Consensus 800 ~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~ 879 (934)
+.+|++++|+|||+..++++. |+.++|.+|++.++++..+..++++..++.. +.||+|+||.++|++|...|+++.
T Consensus 167 ~~l~~~l~~~~Rf~~~i~~~~-p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~-~~g~~~~~i~~l~~~a~~~a~~~~-- 242 (285)
T 3h4m_A 167 DILDPAILRPGRFDRIIEVPA-PDEKGRLEILKIHTRKMNLAEDVNLEEIAKM-TEGCVGAELKAICTEAGMNAIREL-- 242 (285)
T ss_dssp GGBCHHHHSTTSEEEEEECCC-CCHHHHHHHHHHHHTTSCBCTTCCHHHHHHH-CTTCCHHHHHHHHHHHHHHHHHTT--
T ss_pred hhcCHHHcCCCcCCeEEEECC-CCHHHHHHHHHHHHhcCCCCCcCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhc--
Confidence 999999999999999999996 8999999999999999988889999999999 599999999999999999998653
Q ss_pred ccCCCCCCccccccCcccccHHHHHHHHHhhCC--CcCHHHHHHHHHHHHHhcc
Q 002337 880 SSDSNSDSSRIDQADSVVVEYDDFVKVLRELSP--SLSMAELKKYELLRDQFEG 931 (934)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~it~~df~~al~~~~p--svs~~~l~~y~~~~~~~~~ 931 (934)
...|+.+||.+|++.+.+ +.+...-.+|..|+..|..
T Consensus 243 ---------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (285)
T 3h4m_A 243 ---------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHH 281 (285)
T ss_dssp ---------------CSSBCHHHHHHHHHHHHHHHCCC----------------
T ss_pred ---------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhcc
Confidence 125999999999998743 2445556788899888753
No 31
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=297.55 Aligned_cols=270 Identities=31% Similarity=0.516 Sum_probs=205.6
Q ss_pred hcCCHHHHHHHHHhhhcccccccCCCCCccchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccc
Q 002337 642 QVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 721 (934)
Q Consensus 642 ~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~ 721 (934)
..++.+.....+.... .+|..++++|.....++.++|||||||||||++|+++|.+++.+|+.++++++.
T Consensus 116 ~iiG~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIV----------ILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185 (389)
T ss_dssp GSCSCHHHHHHHHHHT----------HHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred HhCCHHHHHHHHHHHH----------HHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence 3455565555554332 134444555543334578999999999999999999999999999999999999
Q ss_pred ccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCC-CCCEEEEEEcCCCC
Q 002337 722 NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDS-SQDLFIIGASNRPD 800 (934)
Q Consensus 722 ~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~-~~~v~vI~aTNrp~ 800 (934)
+.|.|+.+..++.+|..++...|+||||||||.++.++... ......+++++|+..|++.... ..+|+||+|||+++
T Consensus 186 ~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 263 (389)
T 3vfd_A 186 SKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ 263 (389)
T ss_dssp ------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGG
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc--cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCch
Confidence 99999999999999999999999999999999999877532 2345678999999999987542 46799999999999
Q ss_pred CCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 002337 801 LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVL 879 (934)
Q Consensus 801 ~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~ 879 (934)
.+|++++| ||+..+++++ |+.++|.+||+.++.+.... .+.++..++.. ++||+|+||..||+.|+..|+++...
T Consensus 264 ~l~~~l~~--R~~~~i~i~~-p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~-~~g~~~~~l~~L~~~a~~~~~rel~~ 339 (389)
T 3vfd_A 264 ELDEAVLR--RFIKRVYVSL-PNEETRLLLLKNLLCKQGSPLTQKELAQLARM-TDGYSGSDLTALAKDAALGPIRELKP 339 (389)
T ss_dssp GCCHHHHT--TCCEEEECCC-CCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHH-TTTCCHHHHHHHHHHHTTHHHHTSCC
T ss_pred hcCHHHHc--CcceEEEcCC-cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999 9999999997 88999999999998875432 33467889999 59999999999999999999887422
Q ss_pred ccCCCCCCccccccCcccccHHHHHHHHHhhCCCcCHHHHHHHHHHHHHhccC
Q 002337 880 SSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLRDQFEGS 932 (934)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~it~~df~~al~~~~psvs~~~l~~y~~~~~~~~~~ 932 (934)
.... .........|+.+||.+|++.++|+++.++++.|++|.++|+..
T Consensus 340 ~~~~-----~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~ 387 (389)
T 3vfd_A 340 EQVK-----NMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDT 387 (389)
T ss_dssp C--------CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC--
T ss_pred hhhh-----ccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCc
Confidence 1110 11112335799999999999999999999999999999999754
No 32
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=1.2e-29 Score=295.93 Aligned_cols=215 Identities=38% Similarity=0.698 Sum_probs=190.2
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccC
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPA 758 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~ 758 (934)
.+...+.+++|+||||||||++|+++|.+.+.+|+.++++++...|+|.....++.+|+.++...||++||||+|.+..+
T Consensus 59 lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~ 138 (499)
T 2dhr_A 59 MGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 138 (499)
T ss_dssp TSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCC
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHh
Confidence 36677889999999999999999999999999999999999999999999999999999998888999999999999987
Q ss_pred CCCC-CCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhc
Q 002337 759 RGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRK 837 (934)
Q Consensus 759 r~~~-~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~ 837 (934)
|+.. +.......+.++++|.+|+|... ...+++|++||+|+.|||+++||||||+.|++++ |+.++|.+||+.++++
T Consensus 139 r~~~~~~~~~e~~~~l~~LL~~Ldg~~~-~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~-Pd~~~R~~IL~~~~~~ 216 (499)
T 2dhr_A 139 RGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDA-PDVKGREQILRIHARG 216 (499)
T ss_dssp SSSSTTTSSHHHHHHHHHHHHHGGGCCS-SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCC-CCHHHHHHHHHHTTSS
T ss_pred hccCcCCCcHHHHHHHHHHHHHhccccc-CccEEEEEecCChhhcCcccccccccceEEecCC-CCHHHHHHHHHHHHhc
Confidence 7532 11233446789999999998864 4679999999999999999999999999999997 8899999999999998
Q ss_pred CCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhhCCC
Q 002337 838 FKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPS 913 (934)
Q Consensus 838 ~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 913 (934)
.++..++++..+|.. ++||+|+||.++|++|++.|.++. ...|+.+||++|+..+.++
T Consensus 217 ~~l~~dv~l~~lA~~-t~G~~gadL~~lv~~Aa~~A~~~~-----------------~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 217 KPLAEDVDLALLAKR-TPGFVGADLENLLNEAALLAAREG-----------------RRKITMKDLEEAADRVMML 274 (499)
T ss_dssp SCCCCSSTTHHHHTT-SCSCCHHHHHHHHHHHHHHHTTTC-----------------CSSCCSHHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhC-----------------CCccCHHHHHHHHHHHhcc
Confidence 888899999999999 599999999999999998886431 1358999999999998654
No 33
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.96 E-value=3.3e-28 Score=304.11 Aligned_cols=436 Identities=18% Similarity=0.256 Sum_probs=255.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEecCccc--cccccchHHHHHHHHHHhhcC-CCEEEEEc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLM--ASSERKTSAALAQAFNTAQSY-SPTILLLR 463 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el----------g~~~~~I~~~~L~--~~~~g~~e~~L~~~f~~A~~~-~P~IL~ID 463 (934)
+.+++|+||||||||++++++|+.+ +.+++.+++..+. ..+.++.+..++.++..+... .|+|+|||
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~ID 270 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFID 270 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 3468999999999999999999998 8899999999887 355678888999999988764 68999999
Q ss_pred chhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC----CCChh
Q 002337 464 DFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE----GLPPT 539 (934)
Q Consensus 464 EID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~----~Ld~a 539 (934)
|+|.+.+.....+ ..++...|..+++ .+.+.+|++||.++ .++++
T Consensus 271 Ei~~l~~~~~~~g--------~~~~~~~L~~~l~-----------------------~~~i~~I~at~~~~~~~~~~d~a 319 (854)
T 1qvr_A 271 ELHTVVGAGKAEG--------AVDAGNMLKPALA-----------------------RGELRLIGATTLDEYREIEKDPA 319 (854)
T ss_dssp CC---------------------------HHHHH-----------------------TTCCCEEEEECHHHHHHHTTCTT
T ss_pred cHHHHhccCCccc--------hHHHHHHHHHHHh-----------------------CCCeEEEEecCchHHhhhccCHH
Confidence 9999876332111 1223333433322 45678899998764 47999
Q ss_pred hhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhc-----CCCChHHHHHHHHHHHHHHHHhhcc
Q 002337 540 IRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQT-----SGFMPRDLHALVADAGANLIRKSNS 614 (934)
Q Consensus 540 LrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t-----~Gfv~~DL~~L~~~A~~~ai~r~~~ 614 (934)
+++||. .+.++.|+.+++.+|++.++......+.-.-.+..+..++..+ .+|.+.+...++.+|+..+..+...
T Consensus 320 L~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~~ 398 (854)
T 1qvr_A 320 LERRFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALES 398 (854)
T ss_dssp TCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhccC
Confidence 999998 5999999999999999987754322111111234455555544 3467777777777765543211000
Q ss_pred --------------------cccCCCC-----Cchh------------------hhhh--------------------hh
Q 002337 615 --------------------EVDKNEP-----GESD------------------LTAK--------------------VA 631 (934)
Q Consensus 615 --------------------~~~~~~~-----~~~~------------------l~~~--------------------~~ 631 (934)
....+.. .... +... ..
T Consensus 399 ~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (854)
T 1qvr_A 399 APEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIE 478 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 0000000 0000 0000 00
Q ss_pred ccCcch------------------------------hhhhhcCCHHHHHHHHHhhhcccc--------------------
Q 002337 632 HNDNSS------------------------------IAATQVMGKEDLVKAMERSKKRNA-------------------- 661 (934)
Q Consensus 632 ~~~~~~------------------------------~~~~~~i~~ed~~~aL~~~k~~~~-------------------- 661 (934)
...... ......+..+++...+........
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~ 558 (854)
T 1qvr_A 479 LAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHK 558 (854)
T ss_dssp HHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHH
T ss_pred HHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhc
Confidence 000000 000123455555554433211000
Q ss_pred cccCCCCCccchhHHh---hcCCC----CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCcccccc--------
Q 002337 662 SALGAPKLPLLHKDLF---SSGLR----KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM-------- 723 (934)
Q Consensus 662 ~~i~~pk~pl~~~~~~---~~~~~----~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~-------- 723 (934)
..+|....--.-...+ ..++. +..++||+||||||||++|++++..+ +.+|+.++++++...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g 638 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIG 638 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcC
Confidence 0000000000000001 11221 22479999999999999999999988 789999999877543
Q ss_pred ----ccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcC--------CCCCEE
Q 002337 724 ----YIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND--------SSQDLF 791 (934)
Q Consensus 724 ----~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~--------~~~~v~ 791 (934)
|+|..+ ...+....+...++||||||+|.+. ..+.+.|+..||.-.- .-++++
T Consensus 639 ~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~-------------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~i 703 (854)
T 1qvr_A 639 APPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH-------------PDVFNILLQILDDGRLTDSHGRTVDFRNTV 703 (854)
T ss_dssp --------------CHHHHHHHCSSEEEEESSGGGSC-------------HHHHHHHHHHHTTTEECCSSSCCEECTTEE
T ss_pred CCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC-------------HHHHHHHHHHhccCceECCCCCEeccCCeE
Confidence 334332 1234445555667899999999874 3467777777774311 124788
Q ss_pred EEEEcCCC--------------------------CCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcC-------
Q 002337 792 IIGASNRP--------------------------DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF------- 838 (934)
Q Consensus 792 vI~aTNrp--------------------------~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~------- 838 (934)
||+|||.+ ..+.|+|+. |||..+.+. |++.+....|++.+++++
T Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~-pl~~edi~~i~~~~l~~~~~~~~~~ 780 (854)
T 1qvr_A 704 IILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFR-PLTKEQIRQIVEIQLSYLRARLAEK 780 (854)
T ss_dssp EEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCC-CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCC-CCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999973 246778887 999998887 588999999998877632
Q ss_pred CCCcCC---CHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhcccC
Q 002337 839 KLLEDV---SLYSIAKKC-PPNFTGADMYALCADAWFHAAKRKVLSSD 882 (934)
Q Consensus 839 ~~~~~~---~l~~la~~~-t~g~sgaDl~~l~~~A~~~A~~r~~~~~~ 882 (934)
.....+ -+..++... ...++.++|.++|+++...++.+.+...+
T Consensus 781 ~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~ 828 (854)
T 1qvr_A 781 RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGE 828 (854)
T ss_dssp TCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHHHTS
T ss_pred CceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhCc
Confidence 111112 245666652 11567899999999999998888776544
No 34
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.96 E-value=3.7e-30 Score=278.36 Aligned_cols=227 Identities=35% Similarity=0.620 Sum_probs=189.5
Q ss_pred hhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEecc
Q 002337 673 HKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDE 751 (934)
Q Consensus 673 ~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDE 751 (934)
+++.|. .+...+.++||+||||||||++|+++|++++.+|+.++++++...|.|.++..++.+|+.++...|+||||||
T Consensus 32 ~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDE 111 (268)
T 2r62_A 32 YPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDE 111 (268)
T ss_dssp CHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESC
T ss_pred ChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 345554 4777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCC--CchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHH
Q 002337 752 LDSLAPARGASGD--SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRER 829 (934)
Q Consensus 752 id~l~~~r~~~~~--~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~ 829 (934)
+|.+..+|...+. ......+++++|+..|++......+++||+|||+++.+|++++|+|||+..++++. |+.++|.+
T Consensus 112 id~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~-p~~~~r~~ 190 (268)
T 2r62_A 112 IDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK-PDFNGRVE 190 (268)
T ss_dssp GGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCC-CCTTTHHH
T ss_pred hhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecC-cCHHHHHH
Confidence 9999987642211 11112356789999999886555679999999999999999999999999999997 77889999
Q ss_pred HHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHh
Q 002337 830 VLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRE 909 (934)
Q Consensus 830 Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~ 909 (934)
||+.++++.++..++++..+++. ++||+|+||.++|++|++.|.++ ....|+.+||.+|+..
T Consensus 191 il~~~~~~~~~~~~~~~~~la~~-~~g~~g~dl~~l~~~a~~~a~~~-----------------~~~~i~~~~~~~a~~~ 252 (268)
T 2r62_A 191 ILKVHIKGVKLANDVNLQEVAKL-TAGLAGADLANIINEAALLAGRN-----------------NQKEVRQQHLKEAVER 252 (268)
T ss_dssp HHHHHTSSSCCCSSCCTTTTTSS-SCSSCHHHHHHHHHHHHHTTSSS-----------------CCCSCCHHHHHTSCTT
T ss_pred HHHHHHhcCCCCCccCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHh-----------------ccCCcCHHHHHHHHHH
Confidence 99999999888888889999998 69999999999999998776432 1236899999999999
Q ss_pred hCCCcCHHH
Q 002337 910 LSPSLSMAE 918 (934)
Q Consensus 910 ~~psvs~~~ 918 (934)
+.|+...+.
T Consensus 253 ~~~~~~~~~ 261 (268)
T 2r62_A 253 GIAGLEKKL 261 (268)
T ss_dssp CCCCCC---
T ss_pred Hhhcchhhh
Confidence 999865543
No 35
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.96 E-value=2.1e-28 Score=262.68 Aligned_cols=209 Identities=39% Similarity=0.724 Sum_probs=180.6
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccC
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPA 758 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~ 758 (934)
.++..+.|++|+||||||||++++++++..+..++.+++.++...+.|+..+.++.+|+.++...|+++|+||+|.+..+
T Consensus 44 ~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~ 123 (254)
T 1ixz_A 44 MGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 123 (254)
T ss_dssp TTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcc
Confidence 36667788999999999999999999999999999999999988999999899999999998888999999999999877
Q ss_pred CCCC-CCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhc
Q 002337 759 RGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRK 837 (934)
Q Consensus 759 r~~~-~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~ 837 (934)
++.. +.......+++++++.+|+|... ...++++++||+|+.+|++++|+|||++.++++. |+.++|.+||+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~ll~~l~g~~~-~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~-p~~~~r~~il~~~~~~ 201 (254)
T 1ixz_A 124 RGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDA-PDVKGREQILRIHARG 201 (254)
T ss_dssp --------CHHHHHHHHHHHHHHHTCCT-TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCS-CCHHHHHHHHHHHHTT
T ss_pred cCccccccchHHHHHHHHHHHHHhCCCC-CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCC-cCHHHHHHHHHHHHcC
Confidence 6531 11223456788999999998754 4678999999999999999999999999999997 8899999999999999
Q ss_pred CCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHH
Q 002337 838 FKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVL 907 (934)
Q Consensus 838 ~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al 907 (934)
.++..++++..+|.. ++||+|+||.++|++|+..|.++. ...|+.+||++|+
T Consensus 202 ~~~~~~~~~~~la~~-~~G~~~~dl~~~~~~a~~~a~~~~-----------------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 202 KPLAEDVDLALLAKR-TPGFVGADLENLLNEAALLAAREG-----------------RRKITMKDLEEAA 253 (254)
T ss_dssp SCBCTTCCHHHHHHT-CTTCCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHT
T ss_pred CCCCcccCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhc-----------------CCCcCHHHHHHHh
Confidence 888889999999999 599999999999999999887542 1258999999986
No 36
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=3.3e-29 Score=269.23 Aligned_cols=215 Identities=32% Similarity=0.638 Sum_probs=170.9
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccC
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPA 758 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~ 758 (934)
.+...+.++||+||||||||++|+++|++++.+++.++++++.+.|.|.++..++.+|+.++...|+||||||+|.+..+
T Consensus 34 ~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~ 113 (262)
T 2qz4_A 34 LGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 113 (262)
T ss_dssp --CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC------
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhcc
Confidence 36777899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCC--CchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHh
Q 002337 759 RGASGD--SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTR 836 (934)
Q Consensus 759 r~~~~~--~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~ 836 (934)
|+.... ........+++++.++++... ..+++||+|||+++.+|++++|+|||+..+++++ |+.++|.+|++.+++
T Consensus 114 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~-p~~~~r~~il~~~~~ 191 (262)
T 2qz4_A 114 RSTTMSGFSNTEEEQTLNQLLVEMDGMGT-TDHVIVLASTNRADILDGALMRPGRLDRHVFIDL-PTLQERREIFEQHLK 191 (262)
T ss_dssp -------------CHHHHHHHHHHHTCCT-TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCS-CCHHHHHHHHHHHHH
T ss_pred ccccccCccchhHHHHHHHHHHHhhCcCC-CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCC-cCHHHHHHHHHHHHH
Confidence 753211 112234678889999998754 4689999999999999999999999999999997 789999999999999
Q ss_pred cCCCCcCCC--HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhhCCC
Q 002337 837 KFKLLEDVS--LYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPS 913 (934)
Q Consensus 837 ~~~~~~~~~--l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 913 (934)
+.++..+.+ ...++.. +.||+|+||.++|++|+..|+++. ...|+.+||.+|++++.++
T Consensus 192 ~~~~~~~~~~~~~~l~~~-~~g~~~~~l~~l~~~a~~~a~~~~-----------------~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 192 SLKLTQSSTFYSQRLAEL-TPGFSGADIANICNEAALHAAREG-----------------HTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp HTTCCBTHHHHHHHHHHT-CTTCCHHHHHHHHHHHHTC-------------------------CCBCCHHHHHHHHHHH
T ss_pred hCCCCcchhhHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHcC-----------------CCCCCHHHHHHHHHHhccC
Confidence 887655544 3678888 699999999999999998887542 1358899999999988665
No 37
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.95 E-value=4.5e-27 Score=256.01 Aligned_cols=209 Identities=39% Similarity=0.724 Sum_probs=180.3
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccC
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPA 758 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~ 758 (934)
.++..+.+++|+||||||||+++++++...+..++.+++.++...+.++....++.+|+.++...|+++|+||+|.+...
T Consensus 68 ~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~ 147 (278)
T 1iy2_A 68 MGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 147 (278)
T ss_dssp TTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC
T ss_pred cCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcc
Confidence 36666778999999999999999999999999999999999988899998889999999998888999999999999876
Q ss_pred CCCC-CCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhc
Q 002337 759 RGAS-GDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRK 837 (934)
Q Consensus 759 r~~~-~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~ 837 (934)
+... +.......+.+++++.+|+|... ...++++++||+|+.+|++++|+|||++.+++++ |+.++|.+||+.+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~ll~~lsgg~~-~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~-p~~~~r~~il~~~~~~ 225 (278)
T 1iy2_A 148 RGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDA-PDVKGREQILRIHARG 225 (278)
T ss_dssp --------CHHHHHHHHHHHHHHTTCCT-TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCC-CCHHHHHHHHHHHHTT
T ss_pred cccccCCcchHHHHHHHHHHHHHhCCCC-CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCC-cCHHHHHHHHHHHHcc
Confidence 6421 11123446788999999998753 4669999999999999999999999999999996 7899999999999998
Q ss_pred CCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHH
Q 002337 838 FKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVL 907 (934)
Q Consensus 838 ~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al 907 (934)
.++..++++..+|.. ++||+|+||.++|++|+..|.++. ...|+.+||++|+
T Consensus 226 ~~~~~~~~~~~la~~-~~G~~~~dl~~l~~~a~~~a~~~~-----------------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 226 KPLAEDVDLALLAKR-TPGFVGADLENLLNEAALLAAREG-----------------RRKITMKDLEEAA 277 (278)
T ss_dssp SCBCTTCCHHHHHHT-CTTCCHHHHHHHHHHHHHHHHHTT-----------------CCSBCHHHHHHHT
T ss_pred CCCCcccCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhC-----------------CCCcCHHHHHHHh
Confidence 888889999999999 599999999999999998887541 1258999999986
No 38
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.3e-25 Score=249.85 Aligned_cols=219 Identities=20% Similarity=0.306 Sum_probs=173.4
Q ss_pred CCCcCCchHHHHHHHH-HhhccCCCcccc--CCCCceEEEECCCCCcHHHHHHHHHHHh-CCcEEEEecCccccccccch
Q 002337 366 NDFVPLQGDTVKILAS-ILAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRL-GIHVVEYSCHNLMASSERKT 441 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~-il~p~l~p~~~~--~~~~~~VLL~GppGtGKTtLaralA~el-g~~~~~I~~~~L~~~~~g~~ 441 (934)
.+++++.. ..+.|.+ +..|+.+|..+. ..++.+|||+||||||||++|+++|+++ +.+++.++++++.+.+.+++
T Consensus 12 ~di~G~~~-~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~ 90 (322)
T 1xwi_A 12 SDVAGLEG-AKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGES 90 (322)
T ss_dssp GGSCSCHH-HHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSC
T ss_pred HHhcCHHH-HHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHH
Confidence 45666654 4455544 457777777663 3567899999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHH-HHHHHhcCCCccccccccCCCCchhhhhhhh
Q 002337 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVA-SVIREFTEPSAEDEDEESHGYFPVKEIEKIC 520 (934)
Q Consensus 442 e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~-~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~ 520 (934)
+..++.+|..+....|+||||||+|.+.+.+.... .....++. .++..+-. . ...
T Consensus 91 ~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~-----~~~~~~~~~~ll~~ld~-~------------------~~~ 146 (322)
T 1xwi_A 91 EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE-----SEAARRIKTEFLVQMQG-V------------------GVD 146 (322)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC-----TTHHHHHHHHHHHHHHC-S------------------SSC
T ss_pred HHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc-----chHHHHHHHHHHHHHhc-c------------------ccc
Confidence 99999999999999999999999999987542211 11112222 22222110 0 012
Q ss_pred cccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 521 RQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 521 ~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
..+++||+|||.++.++++++|||+..+.++.|+.++|.+|++.+++.... .. .+..++.++..|+||+++||..|
T Consensus 147 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l-~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 147 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN---SL-TEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp CTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB---CC-CHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC---CC-CHHHHHHHHHHcCCCCHHHHHHH
Confidence 567999999999999999999999999999999999999999999876532 11 35678999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 002337 601 VADAGANLIRKSN 613 (934)
Q Consensus 601 ~~~A~~~ai~r~~ 613 (934)
|++|.+.++++..
T Consensus 223 ~~~A~~~a~r~~~ 235 (322)
T 1xwi_A 223 VRDALMQPVRKVQ 235 (322)
T ss_dssp HHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 39
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.94 E-value=1.4e-26 Score=254.36 Aligned_cols=177 Identities=21% Similarity=0.311 Sum_probs=138.7
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHH----HhCCCcEEEecccccc
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKA----RSARPCVIFFDELDSL 755 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A----~~~~p~vlfiDEid~l 755 (934)
+.+++.++|||||||||||++|+++|++++.+|+.++++++.+.|+|+++..++++|+.| +...||||||||||++
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 456788999999999999999999999999999999999999999999999999999999 5778999999999999
Q ss_pred ccCCCCCCCCchhHHHHHHhhhhhccCCc----------CCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHH
Q 002337 756 APARGASGDSGGVMDRVVSQMLAEIDGLN----------DSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVS 825 (934)
Q Consensus 756 ~~~r~~~~~~~~~~~~v~~~lL~~ldg~~----------~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~ 825 (934)
++++++.........++.+.|+..||+.. ....+|+||+|||+++.||++++||||||..|+ + |+.+
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~-P~~~ 188 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--A-PTRE 188 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--C-CCHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--C-cCHH
Confidence 98665333222234567899999988543 124579999999999999999999999999997 3 5899
Q ss_pred HHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHH
Q 002337 826 YRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYA 864 (934)
Q Consensus 826 ~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~ 864 (934)
+|.+|++.++.. .+++...+++. ++||+|+||..
T Consensus 189 ~r~~Il~~~~~~----~~~~~~~l~~~-~~~~~~~~l~~ 222 (293)
T 3t15_A 189 DRIGVCTGIFRT----DNVPAEDVVKI-VDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHHGG----GCCCHHHHHHH-HHHSCSCCHHH
T ss_pred HHHHHHHHhccC----CCCCHHHHHHH-hCCCCcccHHH
Confidence 999999988764 35778999998 59999999864
No 40
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=3.9e-26 Score=282.46 Aligned_cols=240 Identities=42% Similarity=0.711 Sum_probs=206.4
Q ss_pred CccchhHHhh-cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEE
Q 002337 669 LPLLHKDLFS-SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVI 747 (934)
Q Consensus 669 ~pl~~~~~~~-~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vl 747 (934)
+|+.++++|. .++.++.++||+||||||||++|+++|++++.+|+.++++++.+.|.|+.+..++.+|+.++...|+++
T Consensus 222 ~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il 301 (806)
T 1ypw_A 222 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAII 301 (806)
T ss_dssp HHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEE
T ss_pred HHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEE
Confidence 4567777777 488899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHH
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYR 827 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r 827 (934)
|+||+|.++++|+. ..+....+++++|+..|++... ..++++|+|||+++.+|+++.|+|||++.+++++ |+.+.|
T Consensus 302 ~iDEid~l~~~~~~--~~~~~~~~~~~~Ll~ll~g~~~-~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~-p~~~~r 377 (806)
T 1ypw_A 302 FIDELDAIAPKREK--THGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATGR 377 (806)
T ss_dssp EEESGGGTSCTTSC--CCSHHHHHHHHHHHHHHHSSCT-TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCC-CCHHHH
T ss_pred EeccHHHhhhcccc--ccchHHHHHHHHHHHHhhhhcc-cccEEEecccCCchhcCHHHhcccccccccccCC-CCHHHH
Confidence 99999999988754 3345668899999999999865 4679999999999999999999999999999997 889999
Q ss_pred HHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHH
Q 002337 828 ERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVL 907 (934)
Q Consensus 828 ~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al 907 (934)
.+|++.+.+++.+..++++..++.. ++||+|+|+.++|++|++.++++.....+........+......++.+||..++
T Consensus 378 ~~il~~~~~~~~l~~~~~l~~la~~-t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al 456 (806)
T 1ypw_A 378 LEILQIHTKNMKLADDVDLEQVANE-THGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWAL 456 (806)
T ss_dssp HHHHHHTTTTSCCCTTCCTHHHHHS-CSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHH
T ss_pred HHHHHHHHhcCCCcccchhHHHHHh-hcCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccc
Confidence 9999999999999999999999999 699999999999999999998876432211000000011233468899999999
Q ss_pred HhhCCC
Q 002337 908 RELSPS 913 (934)
Q Consensus 908 ~~~~ps 913 (934)
....|+
T Consensus 457 ~~~~~s 462 (806)
T 1ypw_A 457 SQSNPS 462 (806)
T ss_dssp HHSCCC
T ss_pred cccCch
Confidence 998875
No 41
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.93 E-value=2.3e-25 Score=247.80 Aligned_cols=220 Identities=21% Similarity=0.265 Sum_probs=171.6
Q ss_pred CCCcCCchHHHHHHHH-HhhccCCCcccc--CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILAS-ILAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~-il~p~l~p~~~~--~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.++++... ..+.|.+ +..|..+|..+. ..++.++||+||||||||++|+++|++++.+++.++|+++.+.+.++.+
T Consensus 18 ~di~G~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~ 96 (322)
T 3eie_A 18 EDVAGLEG-AKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE 96 (322)
T ss_dssp GGSCSCHH-HHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHH
T ss_pred HHhcChHH-HHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHH
Confidence 44555554 4445544 456666776542 3567899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|..+....|+||||||+|.+.+.+... .......+...+...++. ......
T Consensus 97 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-----~~~~~~~~~~~ll~~l~~------------------~~~~~~ 153 (322)
T 3eie_A 97 KLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-----ESEASRRIKTELLVQMNG------------------VGNDSQ 153 (322)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECGGGGSCC-----------CCTHHHHHHHHHHHGG------------------GGTSCC
T ss_pred HHHHHHHHHHHhcCCeEEEechhhhhhccCCCC-----cchHHHHHHHHHHHHhcc------------------ccccCC
Confidence 999999999999999999999999998744211 111222332222222110 011256
Q ss_pred cEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVA 602 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~ 602 (934)
+++||+|||.++.|++++++||+..+.++.|+.++|.+|++.+++.... ...+..++.++..++||+++|+..+|+
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC----VLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC----CCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC----CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999876432 123567899999999999999999999
Q ss_pred HHHHHHHHhhc
Q 002337 603 DAGANLIRKSN 613 (934)
Q Consensus 603 ~A~~~ai~r~~ 613 (934)
+|.+.++++..
T Consensus 230 ~a~~~a~r~~~ 240 (322)
T 3eie_A 230 DALMQPIRKIQ 240 (322)
T ss_dssp HHTTHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 42
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.93 E-value=6.8e-25 Score=238.48 Aligned_cols=250 Identities=22% Similarity=0.333 Sum_probs=180.0
Q ss_pred CCCcCCchHHHHHHHH-HhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccch
Q 002337 366 NDFVPLQGDTVKILAS-ILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKT 441 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~-il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~ 441 (934)
.++++++ ++.+.|.+ ++.|+.++..+ ++.++.|++|+||||||||||++++|++++..++.+++.++.+.+.++.
T Consensus 10 ~di~g~~-~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~ 88 (274)
T 2x8a_A 10 ADIGALE-DIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGES 88 (274)
T ss_dssp --CCHHH-HHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHH
T ss_pred HHhCCHH-HHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHH
Confidence 4444444 46666664 56777777654 4677889999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhc
Q 002337 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (934)
Q Consensus 442 e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~ 521 (934)
+..++.+|+.+....|+++|+||+|.+...+.... .......+...+..+ .+....
T Consensus 89 ~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~----~~~~~~~~~~~l~~L--------------------sgg~~~ 144 (274)
T 2x8a_A 89 ERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE----TGASVRVVNQLLTEM--------------------DGLEAR 144 (274)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------CTTHHHHHHHHH--------------------HTCCST
T ss_pred HHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc----chHHHHHHHHHHHhh--------------------hccccc
Confidence 89999999999888999999999999876432110 000111112222221 111225
Q ss_pred ccEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhc--CCCChHHH
Q 002337 522 QQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQT--SGFMPRDL 597 (934)
Q Consensus 522 ~~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t--~Gfv~~DL 597 (934)
..++++|+||+|+.||++++| ||++.|.++.|+.++|.+|++.++++...... ..+..++.+|..+ +||+|+||
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~sgadl 222 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPL--DADVNLEAIAGDLRCDCYTGADL 222 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBB--CTTCCHHHHHTCSGGGSCCHHHH
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCC--ccccCHHHHHHhhccCCcCHHHH
Confidence 678999999999999999998 99999999999999999999999864322111 1233468899874 59999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhcc
Q 002337 598 HALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKR 659 (934)
Q Consensus 598 ~~L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~~ 659 (934)
..||++|++.++++....... ........++++||..|++.++..
T Consensus 223 ~~l~~~a~~~a~~~~~~~~~~-----------------~~~~~~~~i~~~df~~al~~~~ps 267 (274)
T 2x8a_A 223 SALVREASICALRQEMARQKS-----------------GNEKGELKVSHKHFEEAFKKVRSS 267 (274)
T ss_dssp HHHHHHHHHHHHHHHC----------------------------CCBCHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHhhccc-----------------cccccCCeecHHHHHHHHHHhcCC
Confidence 999999999998764221110 000123468999999999887653
No 43
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.93 E-value=1e-24 Score=245.84 Aligned_cols=219 Identities=21% Similarity=0.266 Sum_probs=165.8
Q ss_pred CCCcCCchHHHHHHHH-HhhccCCCcccc--CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILAS-ILAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~-il~p~l~p~~~~--~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+++++.. ..+.|.+ +..|+.+|..+. ..++.+|||+||||||||++|+++|++++.+++.++|+++.+.+.+..+
T Consensus 51 ~di~G~~~-~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~ 129 (355)
T 2qp9_X 51 EDVAGLEG-AKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE 129 (355)
T ss_dssp GGSCCGGG-HHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CH
T ss_pred HHhCCHHH-HHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHH
Confidence 44555554 4445544 456666776553 3566899999999999999999999999999999999999998889999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|..+....|+||||||+|.+.+.+... .......+...+...++. ......
T Consensus 130 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~-----~~~~~~~~~~~ll~~l~~------------------~~~~~~ 186 (355)
T 2qp9_X 130 KLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-----ESEASRRIKTELLVQMNG------------------VGNDSQ 186 (355)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECGGGGTC-----------CTHHHHHHHHHHHHHHH------------------CC---C
T ss_pred HHHHHHHHHHHHcCCeEEEEechHhhcccCCCC-----cchHHHHHHHHHHHHhhc------------------ccccCC
Confidence 999999999998899999999999998744211 111112222222111110 001246
Q ss_pred cEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVA 602 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~ 602 (934)
+++||+|||.++.++++++|||++.+.++.|+.++|.+|++.+++.... . ..+..++.++..++||+++||..||+
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~-~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS---V-LTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB---C-CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC---C-CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999876543 1 13567899999999999999999999
Q ss_pred HHHHHHHHhh
Q 002337 603 DAGANLIRKS 612 (934)
Q Consensus 603 ~A~~~ai~r~ 612 (934)
+|.+.++++.
T Consensus 263 ~A~~~a~~~~ 272 (355)
T 2qp9_X 263 DALMQPIRKI 272 (355)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 44
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.92 E-value=2.3e-24 Score=237.53 Aligned_cols=262 Identities=19% Similarity=0.291 Sum_probs=184.6
Q ss_pred CCCcCCchHHHHHHHHHh-hccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccch
Q 002337 366 NDFVPLQGDTVKILASIL-APTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKT 441 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il-~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~ 441 (934)
.++++... ..+.+.+.+ .|+.+|..+ +..++.++||+||||||||++++++|++++.+++.++|+++.+.+.+..
T Consensus 15 ~di~G~~~-~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~ 93 (301)
T 3cf0_A 15 EDIGGLED-VKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES 93 (301)
T ss_dssp GGSCSCHH-HHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTC
T ss_pred HHhCCHHH-HHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCch
Confidence 34555554 455555544 566677654 4577889999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHH-HHHHHHhcCCCccccccccCCCCchhhhhhhh
Q 002337 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEV-ASVIREFTEPSAEDEDEESHGYFPVKEIEKIC 520 (934)
Q Consensus 442 e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev-~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~ 520 (934)
+..++.+|+.+....|+++||||+|.+...+..... +..+....+ ..++..+ +. ...
T Consensus 94 ~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~--~~~~~~~~~~~~lL~~l-~~-------------------~~~ 151 (301)
T 3cf0_A 94 EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG--DGGGAADRVINQILTEM-DG-------------------MST 151 (301)
T ss_dssp TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTC--CSSCSCCHHHHHHHHHH-HS-------------------SCT
T ss_pred HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcC--CcchHHHHHHHHHHHHh-hc-------------------ccC
Confidence 889999999999889999999999999875432111 111111222 2222222 11 112
Q ss_pred cccEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHH
Q 002337 521 RQQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLH 598 (934)
Q Consensus 521 ~~~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~ 598 (934)
..+++||+|||+++.++++++| ||+..+.++.|+.++|.+|++.+++.... ..++ .++.++..++||+++||.
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~----~~~~la~~~~g~sg~dl~ 226 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDV----DLEFLAKMTNGFSGADLT 226 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSC----CHHHHHHTCSSCCHHHHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-Cccc----hHHHHHHHcCCCCHHHHH
Confidence 4679999999999999999998 99999999999999999999999976543 2233 357889999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhc
Q 002337 599 ALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKK 658 (934)
Q Consensus 599 ~L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~ 658 (934)
.+|++|.+.++++.............. ..... ..........++++||..||+.++.
T Consensus 227 ~l~~~a~~~a~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~v~~~~~~~al~~~~~ 283 (301)
T 3cf0_A 227 EICQRACKLAIRESIESEIRRERERQT-NPSAM--EVEEDDPVPEIRRDHFEEAMRFARR 283 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----------------------CCCBCHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccc-ccccc--cccccccCCccCHHHHHHHHHHcCC
Confidence 999999998887643211110000000 00000 0000011246889999999987754
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.91 E-value=6.3e-24 Score=246.35 Aligned_cols=219 Identities=21% Similarity=0.301 Sum_probs=164.0
Q ss_pred CCCcCCchHHHHHHHHH-hhccCCCcccc--CCCCceEEEECCCCCcHHHHHHHHHHHh-CCcEEEEecCccccccccch
Q 002337 366 NDFVPLQGDTVKILASI-LAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRL-GIHVVEYSCHNLMASSERKT 441 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~i-l~p~l~p~~~~--~~~~~~VLL~GppGtGKTtLaralA~el-g~~~~~I~~~~L~~~~~g~~ 441 (934)
.+++++.. ..+.|.+. ..|+.+|..+. ..++.+|||+||||||||++|+++|+++ +.+++.++++++.+.+.+.+
T Consensus 134 ~di~G~~~-~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~ 212 (444)
T 2zan_A 134 SDVAGLEG-AKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGES 212 (444)
T ss_dssp GGSCSCHH-HHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------C
T ss_pred HHhcCHHH-HHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchH
Confidence 44555554 45555544 46777776653 3567899999999999999999999999 89999999999999888888
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhc
Q 002337 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (934)
Q Consensus 442 e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~ 521 (934)
+..++.+|..+....|+||||||+|.+.+.+... .......+. ..++..+.. .....
T Consensus 213 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-----~~~~~~~~~---~~lL~~l~~---------------~~~~~ 269 (444)
T 2zan_A 213 EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-----ESEAARRIK---TEFLVQMQG---------------VGVDN 269 (444)
T ss_dssp CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-----CCGGGHHHH---HHHHTTTTC---------------SSCCC
T ss_pred HHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-----cccHHHHHH---HHHHHHHhC---------------cccCC
Confidence 8899999999998899999999999998744221 111222332 233322110 00125
Q ss_pred ccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHH
Q 002337 522 QQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALV 601 (934)
Q Consensus 522 ~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~ 601 (934)
.+++||+|||.++.++++++|||+..+.++.|+.++|.+|++.++..... .. .+..+..++..+.||+++||..+|
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l-~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN---SL-TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE---EC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC---CC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 67999999999999999999999999999999999999999999876432 11 356789999999999999999999
Q ss_pred HHHHHHHHHhh
Q 002337 602 ADAGANLIRKS 612 (934)
Q Consensus 602 ~~A~~~ai~r~ 612 (934)
++|.+.++++.
T Consensus 346 ~~a~~~a~r~~ 356 (444)
T 2zan_A 346 RDALMQPVRKV 356 (444)
T ss_dssp HHHHTHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 46
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.90 E-value=5.1e-23 Score=238.82 Aligned_cols=219 Identities=20% Similarity=0.265 Sum_probs=167.0
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+..+.+ +..+.+.+++..+.+|..+ +.+.+.+|||+||||||||++++++|++++.+++.++|+++...+.+...
T Consensus 16 ~di~G~~-~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~ 94 (476)
T 2ce7_A 16 KDVGGAE-EAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGA 94 (476)
T ss_dssp GGCCSCH-HHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHH
T ss_pred HHhCCcH-HHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccH
Confidence 3444544 4666777776655555433 45678899999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|..|....|+||||||+|.+...+.... .+...+....+.+++.. +++.....
T Consensus 95 ~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~-----~g~~~~~~~~l~~LL~~----------------ld~~~~~~ 153 (476)
T 2ce7_A 95 ARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL-----GGGHDEREQTLNQLLVE----------------MDGFDSKE 153 (476)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETGGGTCCC--------------CHHHHHHHHHHHH----------------HHHSCGGG
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhhhhccccc-----CcCcHHHHHHHHHHHHH----------------HhccCCCC
Confidence 9999999999999999999999999987442110 01111222223333211 11112256
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
+++||++||+++.++++++| ||++.+.++.|+.++|.+|++.+++..+. ..+. .+..++..|+||+++||.++
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v----~l~~la~~t~G~sgadL~~l 228 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDV----NLEIIAKRTPGFVGADLENL 228 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTC----CHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchh----hHHHHHHhcCCCcHHHHHHH
Confidence 79999999999999999987 89999999999999999999999876542 2233 25779999999999999999
Q ss_pred HHHHHHHHHHh
Q 002337 601 VADAGANLIRK 611 (934)
Q Consensus 601 ~~~A~~~ai~r 611 (934)
|.+|+..+.++
T Consensus 229 v~~Aal~A~~~ 239 (476)
T 2ce7_A 229 VNEAALLAARE 239 (476)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99998877653
No 47
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.90 E-value=8.5e-23 Score=222.39 Aligned_cols=241 Identities=20% Similarity=0.319 Sum_probs=182.6
Q ss_pred CCCcCCchHHHHHHHHHh-hccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccch
Q 002337 366 NDFVPLQGDTVKILASIL-APTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKT 441 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il-~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~ 441 (934)
.+.++.. +..+.+...+ .+..++..+ +...+.++||+||||||||++++++|++++.+++.+++.++.+.+.+..
T Consensus 17 ~~i~G~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~ 95 (285)
T 3h4m_A 17 EDIGGLE-KQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEG 95 (285)
T ss_dssp GGSCSCH-HHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHH
T ss_pred HHhcCHH-HHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchH
Confidence 3344554 3455555444 444554433 3567789999999999999999999999999999999999999989999
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhc
Q 002337 442 SAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (934)
Q Consensus 442 e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~ 521 (934)
...++..|..+....|++|||||+|.+.+.+.... .....+....+..++.. .......
T Consensus 96 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-----~~~~~~~~~~l~~ll~~----------------~~~~~~~ 154 (285)
T 3h4m_A 96 ASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDAL-----TGGDREVQRTLMQLLAE----------------MDGFDAR 154 (285)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSC-----CGGGGHHHHHHHHHHHH----------------HHTTCSS
T ss_pred HHHHHHHHHHHHHcCCeEEEEECHHHhcccCcccc-----CCccHHHHHHHHHHHHH----------------hhCCCCC
Confidence 99999999999999999999999999987442211 11122333333333221 0111224
Q ss_pred ccEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHH
Q 002337 522 QQVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHA 599 (934)
Q Consensus 522 ~~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~ 599 (934)
.++++|+|||.++.+++++++ ||+..+.++.|+.++|.+|++.+++.... .. +..+..++..+.||+++|+..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~----~~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AE----DVNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CT----TCCHHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CC----cCCHHHHHHHcCCCCHHHHHH
Confidence 679999999999999999999 99999999999999999999999875432 22 223688999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhcccc
Q 002337 600 LVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNA 661 (934)
Q Consensus 600 L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~~~~ 661 (934)
++++|...++.+. ...++.+|+..+++.+.....
T Consensus 230 l~~~a~~~a~~~~----------------------------~~~I~~~d~~~al~~~~~~~~ 263 (285)
T 3h4m_A 230 ICTEAGMNAIREL----------------------------RDYVTMDDFRKAVEKIMEKKK 263 (285)
T ss_dssp HHHHHHHHHHHTT----------------------------CSSBCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc----------------------------cCcCCHHHHHHHHHHHHhccc
Confidence 9999988887642 234788999999988765433
No 48
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.90 E-value=2e-22 Score=216.53 Aligned_cols=237 Identities=19% Similarity=0.245 Sum_probs=176.2
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+.++.+ +..+.+..++..+.++..+ +...+.+++|+|||||||||+++++|++++.+++.++|.++...+.+...
T Consensus 12 ~~i~G~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~ 90 (257)
T 1lv7_A 12 ADVAGCD-EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGA 90 (257)
T ss_dssp GGSCSCH-HHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCH
T ss_pred HHhcCcH-HHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhH
Confidence 3344444 4556666666555555433 34667899999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|+.+....|+++||||+|.+...+.... . +...+....+..++.. ........
T Consensus 91 ~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~-~----~~~~~~~~~~~~ll~~----------------l~~~~~~~ 149 (257)
T 1lv7_A 91 SRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL-G----GGHDEREQTLNQMLVE----------------MDGFEGNE 149 (257)
T ss_dssp HHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTS-C----CTTCHHHHHHHHHHHH----------------HHTCCSSS
T ss_pred HHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCc-C----CCchHHHHHHHHHHHH----------------hhCcccCC
Confidence 9999999999988899999999999987432110 0 0111111222222211 00111256
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
+++||++||.++.+++++++ ||++.+.++.|+.++|.+|++.+++..+. ..+. .+..++..++||+++|+..+
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l-~~~~----~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-APDI----DAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTC----CHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC-Cccc----cHHHHHHHcCCCCHHHHHHH
Confidence 79999999999999999998 89999999999999999999999876532 2222 35678999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhh
Q 002337 601 VADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSK 657 (934)
Q Consensus 601 ~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k 657 (934)
+++|...+..+. ...++.+|+..+++.+.
T Consensus 225 ~~~a~~~a~~~~----------------------------~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 225 VNEAALFAARGN----------------------------KRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHTT----------------------------CSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC----------------------------CCcccHHHHHHHHHHHh
Confidence 999988876531 23578889988887653
No 49
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.90 E-value=8.6e-23 Score=219.14 Aligned_cols=221 Identities=17% Similarity=0.256 Sum_probs=158.4
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+.++.. +..+.+.+++....++..+ +...+.++||+||||||||++++++|++++.+++.++|.++...+.+...
T Consensus 6 ~~i~G~~-~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (262)
T 2qz4_A 6 KDVAGMH-EAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGA 84 (262)
T ss_dssp TSSCSCH-HHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHH
T ss_pred HHhCCHH-HHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhH
Confidence 3445554 4666777776666666544 45678899999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|..+....|++|||||+|.+...+...............+..++..+.. .....
T Consensus 85 ~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~--------------------~~~~~ 144 (262)
T 2qz4_A 85 ARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDG--------------------MGTTD 144 (262)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHT--------------------CCTTC
T ss_pred HHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhC--------------------cCCCC
Confidence 8999999999988899999999999976432211000001111223333332211 11246
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
++++|++||.++.+++++++ ||++.+.++.|+.++|.+|++.+++.... ....+..+..++..+.||+++|+..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 79999999999999999999 99999999999999999999999875432 23334456889999999999999999
Q ss_pred HHHHHHHHHH
Q 002337 601 VADAGANLIR 610 (934)
Q Consensus 601 ~~~A~~~ai~ 610 (934)
+++|+..+.+
T Consensus 222 ~~~a~~~a~~ 231 (262)
T 2qz4_A 222 CNEAALHAAR 231 (262)
T ss_dssp HHHHHTC---
T ss_pred HHHHHHHHHH
Confidence 9998766654
No 50
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.89 E-value=5.4e-22 Score=223.86 Aligned_cols=249 Identities=16% Similarity=0.257 Sum_probs=181.3
Q ss_pred CCcCCchHHHHHHHHH-hhccCCCcccc--CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHH
Q 002337 367 DFVPLQGDTVKILASI-LAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSA 443 (934)
Q Consensus 367 ~~~~~~~~~~~~L~~i-l~p~l~p~~~~--~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~ 443 (934)
++++... ..+.+.+. ..|+.++..+. ...+.+|||+||||||||++|+++|++++.+++.++|.++.+.+.+..+.
T Consensus 85 ~i~G~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~ 163 (357)
T 3d8b_A 85 DIAGVEF-AKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEK 163 (357)
T ss_dssp GSCSCHH-HHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHH
T ss_pred HhCChHH-HHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHH
Confidence 3445543 44555544 45666666542 35678999999999999999999999999999999999999988899999
Q ss_pred HHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHH-HHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 444 ALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVA-SVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 444 ~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~-~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
.++.+|..+....|++|||||+|.+...+.... ......+. .++..+.. .......
T Consensus 164 ~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~-----~~~~~~~~~~lL~~l~~------------------~~~~~~~ 220 (357)
T 3d8b_A 164 MVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE-----HESSRRIKTEFLVQLDG------------------ATTSSED 220 (357)
T ss_dssp HHHHHHHHHHHTCSEEEEEETHHHHTBC-----------CHHHHHHHHHHHHHHC----------------------CCC
T ss_pred HHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc-----chHHHHHHHHHHHHHhc------------------ccccCCC
Confidence 999999999988999999999999987432110 01111222 22222211 0011246
Q ss_pred cEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVA 602 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~ 602 (934)
+++||+|||.++.+++++++||...+.++.|+.++|.+|++.+++.... .. .+..++.++..+.||+++|+..||+
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~---~l-~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC---CL-SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB---CC-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC---Cc-cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 7999999999999999999999999999999999999999998865432 11 2567889999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhcc
Q 002337 603 DAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKR 659 (934)
Q Consensus 603 ~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~~ 659 (934)
+|...++++........ . .......++.+||..++..++..
T Consensus 297 ~a~~~~ir~l~~~~~~~----------~------~~~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 297 EASLGPIRSLQTADIAT----------I------TPDQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp HHHTHHHHHCCC--------------------------CCCBCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhhhhhhcc----------c------cccccCCcCHHHHHHHHHhcCCC
Confidence 99988887532111000 0 00123568899999999887653
No 51
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.88 E-value=7.3e-22 Score=216.45 Aligned_cols=249 Identities=22% Similarity=0.310 Sum_probs=177.5
Q ss_pred CCCcCCchHHHHHHHHH-hhccCCCcccc--CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASI-LAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~i-l~p~l~p~~~~--~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.++++.. +..+.+.+. ..|..+|..+. ..++.++||+||||||||++++++|++++.+++.++|+++.+.+.+...
T Consensus 21 ~~i~G~~-~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~ 99 (297)
T 3b9p_A 21 TDIAGQD-VAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGE 99 (297)
T ss_dssp GGSCCCH-HHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHH
T ss_pred HHhCChH-HHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHH
Confidence 3344544 445555544 45666665542 2456899999999999999999999999999999999999998888889
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHH-HHHHHhcCCCccccccccCCCCchhhhhhhhc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVA-SVIREFTEPSAEDEDEESHGYFPVKEIEKICR 521 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~-~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~ 521 (934)
..++.+|..+....|++|||||+|.+...+.... ......+. .++..+.. . ......
T Consensus 100 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-----~~~~~~~~~~ll~~l~~-~----------------~~~~~~ 157 (297)
T 3b9p_A 100 KLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE-----HEASRRLKTEFLVEFDG-L----------------PGNPDG 157 (297)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETGGGTSBCC----------CCSHHHHHHHHHHHHH-C----------------C-----
T ss_pred HHHHHHHHHHHHcCCcEEEeccHHHhccccccCc-----chHHHHHHHHHHHHHhc-c----------------cccCCC
Confidence 9999999999988999999999999987432111 11112222 22222111 0 000113
Q ss_pred ccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHH
Q 002337 522 QQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALV 601 (934)
Q Consensus 522 ~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~ 601 (934)
.+++||++||.++.+++++++||...+.++.|+.++|..|++.+++.... .. .+..++.++..+.||+++|+..|+
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~-~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS---PL-DTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC---CS-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 56999999999999999999999999999999999999999998865432 12 255688999999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhh
Q 002337 602 ADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSK 657 (934)
Q Consensus 602 ~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k 657 (934)
++|...++++......... .......++.+||..++..++
T Consensus 234 ~~a~~~a~r~~~~~~~~~~----------------~~~~~~~i~~~d~~~a~~~~~ 273 (297)
T 3b9p_A 234 KDAALEPIRELNVEQVKCL----------------DISAMRAITEQDFHSSLKRIR 273 (297)
T ss_dssp HHHTTHHHHTCC------------------------CCCCCCCCHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHhhhhcccc----------------cccccCCcCHHHHHHHHHHcC
Confidence 9999888875422111100 000134678899988887654
No 52
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=222.89 Aligned_cols=250 Identities=19% Similarity=0.277 Sum_probs=170.8
Q ss_pred CCCcCCchHHHHHHHH-HhhccCCCcccc--CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILAS-ILAPTLCPSVLS--LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~-il~p~l~p~~~~--~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.++++... ..+.+.. +..+..++..+. ..++.+|||+||||||||++|+++|.+++.+++.++|.++.+.+.+..+
T Consensus 115 ~~iiG~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~ 193 (389)
T 3vfd_A 115 DDIAGQDL-AKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGE 193 (389)
T ss_dssp GGSCSCHH-HHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CH
T ss_pred HHhCCHHH-HHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHH
Confidence 34555544 4444444 446666665442 2456899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|..+....|+||||||||.+...+.... ......+...+...++ ........
T Consensus 194 ~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~-----~~~~~~~~~~ll~~l~-----------------~~~~~~~~ 251 (389)
T 3vfd_A 194 KLVRALFAVARELQPSIIFIDQVDSLLCERREGE-----HDASRRLKTEFLIEFD-----------------GVQSAGDD 251 (389)
T ss_dssp HHHHHHHHHHHHSSSEEEEEETGGGGC-------------CTHHHHHHHHHHHHH-----------------HHC-----
T ss_pred HHHHHHHHHHHhcCCeEEEEECchhhcccCCCcc-----chHHHHHHHHHHHHhh-----------------cccccCCC
Confidence 9999999999999999999999999976432110 1111222221111111 00011246
Q ss_pred cEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVA 602 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~ 602 (934)
+++||+|||.++.+++++++||...+.++.|+.++|.+|++.++..... .. .+..+..++..+.||+++|+..|++
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~l-~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS---PL-TQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC---CS-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC---CC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 7999999999999999999999989999999999999999998865322 12 3457889999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhc
Q 002337 603 DAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKK 658 (934)
Q Consensus 603 ~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~ 658 (934)
.|...++++.......... ......++.+||..+++..+.
T Consensus 328 ~a~~~~~rel~~~~~~~~~----------------~~~~~~i~~~d~~~al~~~~~ 367 (389)
T 3vfd_A 328 DAALGPIRELKPEQVKNMS----------------ASEMRNIRLSDFTESLKKIKR 367 (389)
T ss_dssp HHTTHHHHTSCCC---CCS----------------SSCCCCCCHHHHHHHHHHCCC
T ss_pred HHHHHHHHhhhhhhhhccc----------------hhhcCCcCHHHHHHHHHHcCC
Confidence 9988888753222111100 011345788899888876543
No 53
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.87 E-value=2e-21 Score=226.70 Aligned_cols=218 Identities=21% Similarity=0.266 Sum_probs=165.2
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS 442 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e 442 (934)
.+..+.+ +..+.+.+++..+.++..+ +.+.+.++||+||||||||+|++++|++++.+++.+++.++...+.+...
T Consensus 31 ~dv~G~~-~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~ 109 (499)
T 2dhr_A 31 KDVAGAE-EAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 109 (499)
T ss_dssp TSSCSCH-HHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHH
T ss_pred HHcCCcH-HHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHH
Confidence 4444544 4566666666555454433 45677899999999999999999999999999999999999888788888
Q ss_pred HHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcc
Q 002337 443 AALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQ 522 (934)
Q Consensus 443 ~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~ 522 (934)
..++.+|+.+....|+++||||+|.+...+.... .....+....+.+++..+ ++.....
T Consensus 110 ~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~-----~~~~~e~~~~l~~LL~~L----------------dg~~~~~ 168 (499)
T 2dhr_A 110 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV-----GGGNDEREQTLNQLLVEM----------------DGFEKDT 168 (499)
T ss_dssp HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSST-----TTSSHHHHHHHHHHHHHG----------------GGCCSSC
T ss_pred HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCc-----CCCcHHHHHHHHHHHHHh----------------cccccCc
Confidence 8899999999878899999999999876432110 011223333333433211 1112246
Q ss_pred cEEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 523 QVLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 523 ~ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
.++++++||+++.+|++++| ||++.+.++.|+.++|.+|++.+++... +..++ .+..++..|+||+++||.++
T Consensus 169 ~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-l~~dv----~l~~lA~~t~G~~gadL~~l 243 (499)
T 2dhr_A 169 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDV----DLALLAKRTPGFVGADLENL 243 (499)
T ss_dssp CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC-CCCSS----TTHHHHTTSCSCCHHHHHHH
T ss_pred cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC-CChHH----HHHHHHHhcCCCCHHHHHHH
Confidence 78999999999999999988 7999999999999999999999886542 22222 35789999999999999999
Q ss_pred HHHHHHHHHH
Q 002337 601 VADAGANLIR 610 (934)
Q Consensus 601 ~~~A~~~ai~ 610 (934)
+.+|+..+.+
T Consensus 244 v~~Aa~~A~~ 253 (499)
T 2dhr_A 244 LNEAALLAAR 253 (499)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999876643
No 54
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.86 E-value=1.2e-22 Score=236.52 Aligned_cols=370 Identities=13% Similarity=0.103 Sum_probs=212.6
Q ss_pred CCcCCchHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhC--CcEEEEecCccccccccchHHH
Q 002337 367 DFVPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLG--IHVVEYSCHNLMASSERKTSAA 444 (934)
Q Consensus 367 ~~~~~~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg--~~~~~I~~~~L~~~~~g~~e~~ 444 (934)
+.++.. +..+.+..++..... +..++.++||+||||||||++|+++|++++ .+++.++++++.+.+.++++.
T Consensus 38 ~iiG~~-~~~~~l~~~~~~~~~----~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~- 111 (456)
T 2c9o_A 38 GLVGQE-NAREACGVIVELIKS----KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV- 111 (456)
T ss_dssp TEESCH-HHHHHHHHHHHHHHT----TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-
T ss_pred hccCHH-HHHHHHHHHHHHHHh----CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-
Confidence 344443 455555555543322 234567899999999999999999999999 999999999999999998887
Q ss_pred HHHHHHHh---hcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccc---cCCCCchhh--h
Q 002337 445 LAQAFNTA---QSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEE---SHGYFPVKE--I 516 (934)
Q Consensus 445 L~~~f~~A---~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~---~~g~~~~~~--~ 516 (934)
+++.|..| +...|+++||||+|.+++.+........ . ....+++.++.....+. ....+.... .
T Consensus 112 ~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~-----~---~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 112 LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGY-----G---KTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC----------------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCc-----c---hHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 99999999 7788999999999999986533211000 0 00011111100000000 000000000 0
Q ss_pred hhhhcccEEEEEecCCCCCCChhhhc--ccce--EEEcCCC--CHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcC
Q 002337 517 EKICRQQVLLVAAADSSEGLPPTIRR--CFSH--EISMGPL--TEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTS 590 (934)
Q Consensus 517 ~~~~~~~ViVIatTn~~~~Ld~aLrr--rF~~--eI~i~~P--de~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~ 590 (934)
.......++|+||||+++.++++++| ||++ .+.++.| +.++|.+|++.++. .+++.++..++
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~------------~dl~~~a~~t~ 251 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL------------HDLDVANARPQ 251 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH------------HHHHHTC----
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH------------HHHHHHHHhCC
Confidence 01123446666999999999999876 7988 4566666 44778888765442 24688899999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcCCHHHHHHHHHhhhcccccccCCCCCc
Q 002337 591 GFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPKLP 670 (934)
Q Consensus 591 Gfv~~DL~~L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ed~~~aL~~~k~~~~~~i~~pk~p 670 (934)
| |+|+.+||....... . ..+ ..-..+.+...
T Consensus 252 g--gadl~~l~~~i~~p~--~--~~I-------------------------~~~lr~~I~~~------------------ 282 (456)
T 2c9o_A 252 G--GQDILSMMGQLMKPK--K--TEI-------------------------TDKLRGEINKV------------------ 282 (456)
T ss_dssp --------------------------------------------------------CHHHHH------------------
T ss_pred C--hhHHHHHHhhhcccc--h--hhH-------------------------HHHHHHHHHHH------------------
Confidence 9 999999885311000 0 000 00000000000
Q ss_pred cchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHH-hCCCcEEEe
Q 002337 671 LLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKAR-SARPCVIFF 749 (934)
Q Consensus 671 l~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~-~~~p~vlfi 749 (934)
+...++.++ ...|.|+||
T Consensus 283 -------------------------------------------------------------l~~~~~~g~~~v~~~VliI 301 (456)
T 2c9o_A 283 -------------------------------------------------------------VNKYIDQGIAELVPGVLFV 301 (456)
T ss_dssp -------------------------------------------------------------HHHHHHTTSEEEEECEEEE
T ss_pred -------------------------------------------------------------HHHHHHhccccccceEEEE
Confidence 001111110 012359999
Q ss_pred ccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEE---------cC---CCCCCChhhhCCCCcceeee
Q 002337 750 DELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGA---------SN---RPDLIDPALLRPGRFDKLLY 817 (934)
Q Consensus 750 DEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~a---------TN---rp~~lD~allrpGRfd~~i~ 817 (934)
||+|.+. ....+.|+..|+... .+++|+++ |+ .|+.|+|.+++ ||.. +.
T Consensus 302 DEa~~l~-------------~~a~~aLlk~lEe~~---~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~~ 362 (456)
T 2c9o_A 302 DEVHMLD-------------IECFTYLHRALESSI---APIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-IR 362 (456)
T ss_dssp ESGGGCB-------------HHHHHHHHHHTTSTT---CCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-EE
T ss_pred echhhcC-------------HHHHHHHHHHhhccC---CCEEEEecCCccccccccccccccccCChhHHh--hcce-ee
Confidence 9999984 346778888877542 34666666 33 26789999999 9977 58
Q ss_pred ecCCCCHHHHHHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcc
Q 002337 818 VGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSV 896 (934)
Q Consensus 818 v~~Pp~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~ 896 (934)
++ |++.++..+|++...+.....-+ ..+..+++. ...-+.++...+++.|...|..+. ..
T Consensus 363 ~~-~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~-a~~g~~r~a~~ll~~a~~~A~~~~-----------------~~ 423 (456)
T 2c9o_A 363 TM-LYTPQEMKQIIKIRAQTEGINISEEALNHLGEI-GTKTTLRYSVQLLTPANLLAKING-----------------KD 423 (456)
T ss_dssp CC-CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHH-HHHSCHHHHHHTHHHHHHHHHHTT-----------------CS
T ss_pred CC-CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHhhcC-----------------CC
Confidence 88 58999999999877754332211 124455554 212367777788888776665431 23
Q ss_pred cccHHHHHHHHHhh
Q 002337 897 VVEYDDFVKVLREL 910 (934)
Q Consensus 897 ~it~~df~~al~~~ 910 (934)
.|+.+|+.+|+.-+
T Consensus 424 ~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 424 SIEKEHVEEISELF 437 (456)
T ss_dssp SBCHHHHHHHHHHS
T ss_pred ccCHHHHHHHHHHh
Confidence 68999999999876
No 55
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.86 E-value=1.5e-24 Score=252.59 Aligned_cols=177 Identities=24% Similarity=0.372 Sum_probs=122.3
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHHcC--CcEEEecCccccccccchhhhhhHHHHHHH---HhCCCcEEEeccccc
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECS--LNFLSVKGPELINMYIGESEKNVRDIFQKA---RSARPCVIFFDELDS 754 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~~~--~~~i~v~~~~l~~~~~Gese~~v~~lf~~A---~~~~p~vlfiDEid~ 754 (934)
+..++.++|||||||||||++|+++|++++ .+|+.++++++.++|+|+++. ++++|+.| +...||||||||+|+
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~ 137 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTE 137 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEE
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhh
Confidence 555678999999999999999999999999 999999999999999999998 99999999 888999999999999
Q ss_pred cccCCCCCCCC--chhHHHHHHh---------------hhhhcc--CCcCCCCCEEEEEEcCCCCCCChhhhCCCCcce-
Q 002337 755 LAPARGASGDS--GGVMDRVVSQ---------------MLAEID--GLNDSSQDLFIIGASNRPDLIDPALLRPGRFDK- 814 (934)
Q Consensus 755 l~~~r~~~~~~--~~~~~~v~~~---------------lL~~ld--g~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~- 814 (934)
++++|+....+ +....+++.+ ++..|+ +.. .+..++|++|||+++.+|++++||||||+
T Consensus 138 l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~v~i~attn~~~~ld~a~~r~~rfd~~ 216 (456)
T 2c9o_A 138 LTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVE-AGDVIYIEANSGAVKRQGRCDTYATEFDLE 216 (456)
T ss_dssp EEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCC-TTEEEEEETTTCCEEEEEEETTSCCTTSCS
T ss_pred cccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCC-CCCEEEEEcCCCCcccCChhhcCCcccCcc
Confidence 99998654221 1122233333 333333 222 23446667999999999999999999999
Q ss_pred -eeeecCCC-CHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHH
Q 002337 815 -LLYVGVNS-DVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 815 -~i~v~~Pp-~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
.+++++|. +.+.|.+|++.++.. |++.+++. |+| |+||.++|..
T Consensus 217 ~~~~v~~p~~~~~~R~~il~~~~~~-------dl~~~a~~-t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 217 AEEYVPLPKGDVHKKKEIIQDVTLH-------DLDVANAR-PQG--GQDILSMMGQ 262 (456)
T ss_dssp SSSEECCCCSCSEEEEEEEEEEEHH-------HHHHTC------------------
T ss_pred eeEecCCCchhHHHHHHHHHHHHHH-------HHHHHHHh-CCC--hhHHHHHHhh
Confidence 77888742 245677777654432 68888888 689 9999999954
No 56
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.85 E-value=1e-20 Score=202.71 Aligned_cols=218 Identities=20% Similarity=0.255 Sum_probs=157.1
Q ss_pred CCcCCchHHHHHHHHHhhccCCCcc---ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHH
Q 002337 367 DFVPLQGDTVKILASILAPTLCPSV---LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSA 443 (934)
Q Consensus 367 ~~~~~~~~~~~~L~~il~p~l~p~~---~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~ 443 (934)
+..+.+ +....+.++...+.++.. .+...+.+++|+|||||||||+++++|+.++..++.+++.++...+.+....
T Consensus 17 ~i~g~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 95 (254)
T 1ixz_A 17 DVAGAE-EAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAA 95 (254)
T ss_dssp GCCSCH-HHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHH
T ss_pred HhCCcH-HHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHH
Confidence 344443 445555555544333322 2356677899999999999999999999999999999998877766677778
Q ss_pred HHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhccc
Q 002337 444 ALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ 523 (934)
Q Consensus 444 ~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ 523 (934)
.+..+|+.+....|+++++||+|.+...+.... .....+....+.+++..+ .+......
T Consensus 96 ~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~-----~~~~~~~~~~~~~ll~~l----------------~g~~~~~~ 154 (254)
T 1ixz_A 96 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV-----GGGNDEREQTLNQLLVEM----------------DGFEKDTA 154 (254)
T ss_dssp HHHHHHHHHTTSSSEEEEEETHHHHHC--------------CHHHHHHHHHHHHHH----------------HTCCTTCC
T ss_pred HHHHHHHHHHhcCCeEEEehhhhhhhcccCccc-----cccchHHHHHHHHHHHHH----------------hCCCCCCC
Confidence 889999999877899999999999876432100 001112222233332111 11112456
Q ss_pred EEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHH
Q 002337 524 VLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALV 601 (934)
Q Consensus 524 ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~ 601 (934)
++++++||+|+.+|++++| ||++.+.++.|+.++|.+|++.+++.... ..+ ..+..++..++||+++||..++
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~----~~~~~la~~~~G~~~~dl~~~~ 229 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AED----VDLALLAKRTPGFVGADLENLL 229 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCB-CTT----CCHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCC-Ccc----cCHHHHHHHcCCCCHHHHHHHH
Confidence 8999999999999999998 79999999999999999999988765432 222 2357899999999999999999
Q ss_pred HHHHHHHHHh
Q 002337 602 ADAGANLIRK 611 (934)
Q Consensus 602 ~~A~~~ai~r 611 (934)
++|+..+.++
T Consensus 230 ~~a~~~a~~~ 239 (254)
T 1ixz_A 230 NEAALLAARE 239 (254)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9998877643
No 57
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=99.85 E-value=1.4e-20 Score=190.49 Aligned_cols=176 Identities=24% Similarity=0.344 Sum_probs=131.3
Q ss_pred CCCccccccccccCccccccccccCCCCceEEeecHhhhhhccccccceEEEeecCCCcceEEEEEEecCCCCCccccCC
Q 002337 65 SLQLPAGILRFSKDKIDISDAKFASLDDSALLGLSTCVLKQLSVTSGSLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDG 144 (934)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~l~~~~l~~l~~~~G~~v~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 144 (934)
+.+++|+||+.|+.| |+|.|++|..+|.+.|.|+.++|++|||+.||.|.|+|.. +|.+.++|+...
T Consensus 9 ~~~~~~~~~~~~~~p-~~l~V~ea~~~D~givrl~p~~m~~Lgl~~GD~V~I~Gkr---~k~Tva~v~~~~--------- 75 (187)
T 3tiw_A 9 SDDLSTAILKQKSRP-NRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK---RREAVCIVLSDD--------- 75 (187)
T ss_dssp -------------CC-CEEEEEECSSCCTTEEEECHHHHHHHTCCTTCEEEEECST---TCEEEEEEEECT---------
T ss_pred ccccchhhhhcccCC-CeEEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEECCC---CCeEEEEEEECC---------
Confidence 469999999999999 9999999999999999999999999999999999999755 668888886332
Q ss_pred CCccCCCCCcccccCCCCCCCCccccccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCc
Q 002337 145 DVHSKHSSPTMLTFPSIHLPQDDMELLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKAS 224 (934)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 224 (934)
..+.+++.|+-.++.|+|+..|+
T Consensus 76 -------------------------~~~~g~Irid~~~R~N~gV~iGD-------------------------------- 98 (187)
T 3tiw_A 76 -------------------------TCSDEKIRMNRVVRNNLRVRLGD-------------------------------- 98 (187)
T ss_dssp -------------------------TSCTTEEEECHHHHHHTTCCTTC--------------------------------
T ss_pred -------------------------CCCCCEEEeCHHHHhhcCCCCCC--------------------------------
Confidence 23568999999999999999985
Q ss_pred eEEEEEEecCCCCCcceeeEEEeeecCCCCccccccCCchhhhhhhHHHHHHHHHhhcc-CCCeeecCCEEEEecccCCC
Q 002337 225 LIKLGLQSVGQLPKYASHLRVSFVKIPECGTLESLKGSSAIEAEDRQEKIDLALHNYFE-VDRYLARGDVFSVCINWNCS 303 (934)
Q Consensus 225 ~~~v~~~p~~~~p~~a~~~rv~~~~~p~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~f~-~~r~~~~gd~~~v~~~~~~~ 303 (934)
.|+|+|+.++ ++|+++++ .|..++++++.++ +|+.+|++||. .+|||.+||+|.|...
T Consensus 99 --~V~V~~~~~v-~~A~~V~L----aP~~~~i~~i~~~----------~~~~~lk~~l~~~~rpV~~GD~i~v~~~---- 157 (187)
T 3tiw_A 99 --VISIQPCPDV-KYGKRIHV----LPIDDTVEGITGN----------LFEVYLKPYFLEAYRPIRKGDIFLVRGG---- 157 (187)
T ss_dssp --EEEEEECTTC-EECSEEEE----EECCCC-----CC----------HHHHTHHHHHTTTCCEEETTCEEEEECS----
T ss_pred --EEEEEECCCC-CCceEEEE----eccccchhhccch----------hHHHHHHHHhccCCceeeCCCEEEEccC----
Confidence 5889999754 79997554 7888888778777 89999999998 5999999999999853
Q ss_pred CccccccccccCCCCCceEEEEEEEEecCCCeEEEEeCCeeEEEEc
Q 002337 304 SMICIPCRQRLHRRSDNIIYFKVVAVEPSEETVLRVNCTKTALVLG 349 (934)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~vd~~~T~lv~~ 349 (934)
++.+.|+|++++|++. ++| ...|.+.+.
T Consensus 158 ---------------~~~v~f~Vv~t~P~~~--v~V-~~~T~I~~e 185 (187)
T 3tiw_A 158 ---------------MRAVEFKVVETDPSPY--CIV-APDTVIHCE 185 (187)
T ss_dssp ---------------SSEEEEEEEEEESSSE--EEC-CTTCEEECC
T ss_pred ---------------CCEEEEEEEEecCCCC--EEE-CCCcEEEec
Confidence 5689999999999743 223 344555443
No 58
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.84 E-value=6.9e-20 Score=199.22 Aligned_cols=217 Identities=20% Similarity=0.254 Sum_probs=157.0
Q ss_pred CCcCCchHHHHHHHHHhhccCCCcc---ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHH
Q 002337 367 DFVPLQGDTVKILASILAPTLCPSV---LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSA 443 (934)
Q Consensus 367 ~~~~~~~~~~~~L~~il~p~l~p~~---~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~ 443 (934)
++++.+ +..+.+.++...+..+.. .+...+.+++|+||||||||||++++|+.++..++.+++.++.....+....
T Consensus 41 ~i~g~~-~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 119 (278)
T 1iy2_A 41 DVAGAE-EAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAA 119 (278)
T ss_dssp GSSSCH-HHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHH
T ss_pred HhCChH-HHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHH
Confidence 344443 455566665544433322 2346677899999999999999999999999999999998877666667777
Q ss_pred HHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhccc
Q 002337 444 ALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ 523 (934)
Q Consensus 444 ~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ 523 (934)
.+..+|+.+....|+++++||+|.+...+.... .....+....+.+++..+ .+......
T Consensus 120 ~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~-----~~~~~~~~~~~~~ll~~l----------------sgg~~~~~ 178 (278)
T 1iy2_A 120 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV-----GGGNDEREQTLNQLLVEM----------------DGFEKDTA 178 (278)
T ss_dssp HHHHHHHHHHTSCSEEEEEETHHHHHCC-------------CHHHHHHHHHHHHHH----------------TTCCTTCC
T ss_pred HHHHHHHHHHhcCCcEEehhhhHhhhccccccc-----CCcchHHHHHHHHHHHHH----------------hCCCCCCC
Confidence 888999999877899999999998876332100 001122223333332211 01112456
Q ss_pred EEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHH
Q 002337 524 VLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALV 601 (934)
Q Consensus 524 ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~ 601 (934)
++++++||.++.+|++++| ||++.+.++.|+.++|.+|++.+++.... ..+ ..+..++..++||+++||..++
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~----~~~~~la~~~~G~~~~dl~~l~ 253 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AED----VDLALLAKRTPGFVGADLENLL 253 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCB-CTT----CCHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCC-Ccc----cCHHHHHHHcCCCCHHHHHHHH
Confidence 8999999999999999988 79999999999999999999988865422 222 2357799999999999999999
Q ss_pred HHHHHHHHH
Q 002337 602 ADAGANLIR 610 (934)
Q Consensus 602 ~~A~~~ai~ 610 (934)
++|+..+.+
T Consensus 254 ~~a~~~a~~ 262 (278)
T 1iy2_A 254 NEAALLAAR 262 (278)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999877754
No 59
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.83 E-value=4e-22 Score=215.24 Aligned_cols=217 Identities=18% Similarity=0.253 Sum_probs=154.4
Q ss_pred CCcCCchHHHHHHHHHhhccCCCccc---cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHH
Q 002337 367 DFVPLQGDTVKILASILAPTLCPSVL---SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSA 443 (934)
Q Consensus 367 ~~~~~~~~~~~~L~~il~p~l~p~~~---~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~ 443 (934)
+.++.. +..+.+.+++..+.+|..+ +...+.++||+||||||||++|+++|++++.+++.++|.++...+.+....
T Consensus 12 ~i~G~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~ 90 (268)
T 2r62_A 12 DMAGNE-EAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGAS 90 (268)
T ss_dssp TSSSCT-TTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSS
T ss_pred HhCCcH-HHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHH
Confidence 344443 3455666666555555443 356678899999999999999999999999999999999988777776666
Q ss_pred HHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhccc
Q 002337 444 ALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQ 523 (934)
Q Consensus 444 ~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ 523 (934)
.++..|+.+....|++|||||+|.+...+...+........ ...+..++..+ +.......+
T Consensus 91 ~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~----~~~~~~ll~~l---------------~~~~~~~~~ 151 (268)
T 2r62_A 91 RVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDER----EQTLNQLLAEM---------------DGFGSENAP 151 (268)
T ss_dssp SSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCS----CSSTTTTTTTT---------------TCSSCSCSC
T ss_pred HHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhH----HHHHHHHHHHh---------------hCcccCCCC
Confidence 77788998888889999999999998643211100000000 00011111110 000012456
Q ss_pred EEEEEecCCCCCCChhhhc--ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHH
Q 002337 524 VLLVAAADSSEGLPPTIRR--CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALV 601 (934)
Q Consensus 524 ViVIatTn~~~~Ld~aLrr--rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~ 601 (934)
++||+|||.++.+++++++ ||+..+.++.|+.++|.++++.+++.... ..+. .++.++..+.||+++|+..++
T Consensus 152 v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~----~~~~la~~~~g~~g~dl~~l~ 226 (268)
T 2r62_A 152 VIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKL-ANDV----NLQEVAKLTAGLAGADLANII 226 (268)
T ss_dssp CEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCC-CSSC----CTTTTTSSSCSSCHHHHHHHH
T ss_pred EEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCC-CCcc----CHHHHHHHcCCCCHHHHHHHH
Confidence 8999999999999999998 89999999999999999999999876532 2222 246688899999999999999
Q ss_pred HHHHHHH
Q 002337 602 ADAGANL 608 (934)
Q Consensus 602 ~~A~~~a 608 (934)
++|...+
T Consensus 227 ~~a~~~a 233 (268)
T 2r62_A 227 NEAALLA 233 (268)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9887554
No 60
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=99.82 E-value=5.8e-20 Score=189.31 Aligned_cols=177 Identities=24% Similarity=0.348 Sum_probs=135.5
Q ss_pred CCCccccccccccCccccccccccCCCCceEEeecHhhhhhccccccceEEEeecCCCcceEEEEEEecCCCCCccccCC
Q 002337 65 SLQLPAGILRFSKDKIDISDAKFASLDDSALLGLSTCVLKQLSVTSGSLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDG 144 (934)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~l~~~~l~~l~~~~G~~v~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 144 (934)
+.+++|+||+.|+.| |++.|++|..+|.+.|.|+..+|++|||+.||.|+|+|.. +|.+.++|+...
T Consensus 12 ~~~~~~~~~~~~~~p-~~l~V~ea~~~Drgivrl~p~~m~~Lgl~~GD~V~I~Gkr---~k~Tva~v~~~~--------- 78 (211)
T 3qwz_A 12 GDDLSTAILKQKNRP-NRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGXK---RREAVCIVLSDD--------- 78 (211)
T ss_dssp --------------C-EEEEEEECSCCCTTEEEECHHHHHHHTCCBTCEEEEECST---TCEEEEEEEECT---------
T ss_pred ccccchhhhhcccCC-CeeEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEeCCC---CCcEEEEEEeCC---------
Confidence 479999999999999 9999999999999999999999999999999999999755 668888886332
Q ss_pred CCccCCCCCcccccCCCCCCCCccccccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCc
Q 002337 145 DVHSKHSSPTMLTFPSIHLPQDDMELLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKAS 224 (934)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 224 (934)
.++.+++.|+-.++.|||+..|+
T Consensus 79 -------------------------~~~~g~Irid~~~R~N~gV~iGD-------------------------------- 101 (211)
T 3qwz_A 79 -------------------------TCSDEKIRMNRVVRNNLRVRLGD-------------------------------- 101 (211)
T ss_dssp -------------------------TSCTTEEEECHHHHHHTTCCTTC--------------------------------
T ss_pred -------------------------CCCCCEEEeCHHHHhhcCCCCCC--------------------------------
Confidence 23568999999999999999985
Q ss_pred eEEEEEEecCCCCCcceeeEEEeeecCCCCccccccCCchhhhhhhHHHHHHHHHhhcc-CCCeeecCCEEEEecccCCC
Q 002337 225 LIKLGLQSVGQLPKYASHLRVSFVKIPECGTLESLKGSSAIEAEDRQEKIDLALHNYFE-VDRYLARGDVFSVCINWNCS 303 (934)
Q Consensus 225 ~~~v~~~p~~~~p~~a~~~rv~~~~~p~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~f~-~~r~~~~gd~~~v~~~~~~~ 303 (934)
.|+|+|+.++ ++|+++++ .|..++++++.++ +|+.+|++||. .+|||.+||+|.|...
T Consensus 102 --~V~V~~~~~v-~~A~~V~L----aP~~~~i~~i~~~----------~~~~~lk~~l~~~~rPV~~GD~i~v~~~---- 160 (211)
T 3qwz_A 102 --VISIQPCPDV-KYGKRIHV----LPIDDTVEGITGN----------LFEVYLKPYFLEAYRPIRKGDIFLVRGG---- 160 (211)
T ss_dssp --EEEEEECTTC-CBCSEEEE----EEBGGGCTTCCSC----------HHHHTTHHHHTTCCEEEETTCEEECCCT----
T ss_pred --EEEEEECCCC-CCceEEEE----eccCcchhccCch----------hHHHHHHHHHhhCCceeecCCEEEEccC----
Confidence 5889999755 79997554 7887888788777 89999999998 6999999999998742
Q ss_pred CccccccccccCCCCCceEEEEEEEEecCCCeEEEEeCCeeEEEEcC
Q 002337 304 SMICIPCRQRLHRRSDNIIYFKVVAVEPSEETVLRVNCTKTALVLGG 350 (934)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~vd~~~T~lv~~~ 350 (934)
++.+.|+|++++|++ .++| ...|.+.+.+
T Consensus 161 ---------------~~~v~f~Vv~t~P~g--~viV-~~~T~I~~~~ 189 (211)
T 3qwz_A 161 ---------------MRAVEFXVVETDPSP--YCIV-APDTVIHCEG 189 (211)
T ss_dssp ---------------TSCCEEEEEEEESSS--EEEE-CTTCEEECCS
T ss_pred ---------------CcEEEEEEEeecCCC--CEEE-CCCcEEEEcC
Confidence 467999999999974 3333 4456666644
No 61
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.81 E-value=8.6e-20 Score=200.20 Aligned_cols=186 Identities=13% Similarity=0.191 Sum_probs=128.5
Q ss_pred cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHh----hcCCCEEEEEcchhhc
Q 002337 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTA----QSYSPTILLLRDFDVF 468 (934)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A----~~~~P~IL~IDEID~L 468 (934)
+.+.+.++||+||||||||++++++|+++|.+++.++|+++.+.+.|.++..+++.|..| +...|+||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 456788999999999999999999999999999999999999999999999999999998 5678999999999999
Q ss_pred cccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhc--ccce
Q 002337 469 RNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRR--CFSH 546 (934)
Q Consensus 469 ~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrr--rF~~ 546 (934)
.+..+... ........+...|.++++..... ... .........+++||+|||+++.+|++++| ||+.
T Consensus 112 ~~~~~~~~---~~~~~~~~v~~~Ll~~ld~~~~~---~~~-----~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~ 180 (293)
T 3t15_A 112 AGRMGGTT---QYTVNNQMVNATLMNIADNPTNV---QLP-----GMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEK 180 (293)
T ss_dssp ---------------CHHHHHHHHHHHHHCCC-------------------CCCCCCEEEECSSCCC--CHHHHHHHEEE
T ss_pred cCCCCCCc---cccchHHHHHHHHHHHhcccccc---ccc-----cccccccCCCcEEEEecCCcccCCHHHhCCCCCce
Confidence 87332111 11112334545555554321100 000 00012235679999999999999999997 7887
Q ss_pred EEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHH
Q 002337 547 EISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHAL 600 (934)
Q Consensus 547 eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L 600 (934)
.+. .|+.++|.+|++.++... +.+ .+.++..+.||+++|+..+
T Consensus 181 ~i~--~P~~~~r~~Il~~~~~~~-----~~~----~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 181 FYW--APTREDRIGVCTGIFRTD-----NVP----AEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp EEE--CCCHHHHHHHHHHHHGGG-----CCC----HHHHHHHHHHSCSCCHHHH
T ss_pred eEe--CcCHHHHHHHHHHhccCC-----CCC----HHHHHHHhCCCCcccHHHH
Confidence 776 579999999999887532 222 4678888999999998764
No 62
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.76 E-value=7.4e-19 Score=193.36 Aligned_cols=207 Identities=17% Similarity=0.183 Sum_probs=154.2
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHc-------CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccc
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATEC-------SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDS 754 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~-------~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~ 754 (934)
.++.++||+||||||||++|+++|+.+ ..+++.++++++.+.|+|.++..++.+|..+ .++||||||+|.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~ 141 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYY 141 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhh
Confidence 345679999999999999999999887 3489999999999999999999999999887 467999999999
Q ss_pred cccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC-----CCChhhhCCCCcceeeeecCCCCHHHHHH
Q 002337 755 LAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNSDVSYRER 829 (934)
Q Consensus 755 l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~-----~lD~allrpGRfd~~i~v~~Pp~~~~r~~ 829 (934)
+...+... .....+++.|+..|+.. ..++++|++||.++ .++|+|++ ||+..++|+. |+.+++..
T Consensus 142 l~~~~~~~----~~~~~~~~~Ll~~l~~~---~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~-~~~~~~~~ 211 (309)
T 3syl_A 142 LYRPDNER----DYGQEAIEILLQVMENN---RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPD-YSDEELFE 211 (309)
T ss_dssp SCCCC-------CCTHHHHHHHHHHHHHC---TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECC-CCHHHHHH
T ss_pred hccCCCcc----cccHHHHHHHHHHHhcC---CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCC-cCHHHHHH
Confidence 98665421 22356788888888753 35688999998764 35799999 9999999995 88999999
Q ss_pred HHHHHHhcCCCCcCCC-HHHHHhhC------CCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHH
Q 002337 830 VLKALTRKFKLLEDVS-LYSIAKKC------PPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDD 902 (934)
Q Consensus 830 Il~~~~~~~~~~~~~~-l~~la~~~------t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~d 902 (934)
|++.++++....-+.+ +..++..+ ...-+++++.++|..|...+..|.+..... .....+...|+.+|
T Consensus 212 il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~-----~~~~~~l~~i~~~d 286 (309)
T 3syl_A 212 IAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSG-----PLDARALSTIAEED 286 (309)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC--------CEEHHHHHEECHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCC-----CCCHHHHhhccHHH
Confidence 9999998765433222 33444431 122358999999999999888887643110 11112233567777
Q ss_pred HHHH
Q 002337 903 FVKV 906 (934)
Q Consensus 903 f~~a 906 (934)
|..+
T Consensus 287 ~~~~ 290 (309)
T 3syl_A 287 IRAS 290 (309)
T ss_dssp HHTS
T ss_pred hccc
Confidence 7664
No 63
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.74 E-value=1.2e-19 Score=234.28 Aligned_cols=119 Identities=26% Similarity=0.368 Sum_probs=94.8
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHHcCCc-----EEEecC--cccc--------ccccch----hhhhhHHHHHHHH
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLN-----FLSVKG--PELI--------NMYIGE----SEKNVRDIFQKAR 740 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~~~~~-----~i~v~~--~~l~--------~~~~Ge----se~~v~~lf~~A~ 740 (934)
|+.+++.+++|||||||||++|++++.+...+ |+.+.. ++++ ++|+++ +|++++.+|.+||
T Consensus 1078 G~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar 1157 (1706)
T 3cmw_A 1078 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1157 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHH
Confidence 34455559999999999999999999877444 555544 3343 778888 9999999999999
Q ss_pred hCCCcEEEeccccccccCC---CCCCC-CchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC
Q 002337 741 SARPCVIFFDELDSLAPAR---GASGD-SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 800 (934)
Q Consensus 741 ~~~p~vlfiDEid~l~~~r---~~~~~-~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~ 800 (934)
+..||+||+||+|+|+|++ |..++ ..++..|+++|+|++|+++.. ..+|+|| +||+..
T Consensus 1158 ~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~-~~~v~v~-~~n~~~ 1219 (1706)
T 3cmw_A 1158 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK-QSNTLLI-FINQIR 1219 (1706)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH-HTTCEEE-EEECEE
T ss_pred hcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhc-cCCeEEE-Eecccc
Confidence 9999999999999999994 33333 237889999999999999765 3567777 888863
No 64
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.74 E-value=7e-17 Score=184.94 Aligned_cols=356 Identities=13% Similarity=0.190 Sum_probs=167.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcccc-ccccc-hHHHHHHHHHHhhcCCCEEEEEcchhhcccccc
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA-SSERK-TSAALAQAFNTAQSYSPTILLLRDFDVFRNLVS 473 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~-~~~g~-~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~ 473 (934)
++.++||+||||||||++++++|+.++.+++.++++.+.. .+.|. .+..++.+|+.|... +++||++.+....
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~----~~~De~d~~~~~~- 123 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL----VRQQEIAKNRARA- 123 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH----HHHHHHHSCC----
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhc----chhhhhhhhhccc-
Confidence 4578999999999999999999999999999999998887 47774 788999999998764 3478888664311
Q ss_pred CCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEe-cCCCCCCChhhhc--ccceEEEc
Q 002337 474 NESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAA-ADSSEGLPPTIRR--CFSHEISM 550 (934)
Q Consensus 474 ~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIat-Tn~~~~Ld~aLrr--rF~~eI~i 550 (934)
.......+.. .++.+ +++......+ +++ ||+++.|+++++| ||+++|++
T Consensus 124 -------~~~~e~rvl~---~LL~~----------------~dg~~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i 175 (444)
T 1g41_A 124 -------EDVAEERILD---ALLPP----------------AKNQWGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEI 175 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------hhhHHHHHHH---HHHHH----------------hhcccccccc--ccccccCHHHHHHHHHcCCCcceEEEE
Confidence 1111222222 22211 1111112222 454 9999999999998 89999999
Q ss_pred CCCCHH-HHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhcccccCCCCCchhhhhh
Q 002337 551 GPLTEQ-QRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAK 629 (934)
Q Consensus 551 ~~Pde~-~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~ 629 (934)
+.|+.. .|.+|+.. .++. ++ +.++..+.... .... .
T Consensus 176 ~lP~~~~~~~ei~~~--~g~~-------------~~--------~~~~~~~~~~~----~~~~-----~----------- 212 (444)
T 1g41_A 176 DVSAGVSMGVEIMAP--PGME-------------EM--------TNQLQSLFQNL----GSDK-----T----------- 212 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCccchhhhhcC--CChH-------------HH--------HHHHHHHHHhh----cCCC-----C-----------
Confidence 999997 78887653 1110 00 00011110000 0000 0
Q ss_pred hhccCcchhhhhhcCCHHHHHHHHHhhhcccccccCCCCCccchhHHhhcCCCCCCcceecCCCCCcchHHHHHHHHHcC
Q 002337 630 VAHNDNSSIAATQVMGKEDLVKAMERSKKRNASALGAPKLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS 709 (934)
Q Consensus 630 ~~~~~~~~~~~~~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~~ 709 (934)
..+.++.. .|.+....
T Consensus 213 ----------~~~~~~v~---~a~~~l~~--------------------------------------------------- 228 (444)
T 1g41_A 213 ----------KKRKMKIK---DALKALID--------------------------------------------------- 228 (444)
T ss_dssp --------------------------CCG---------------------------------------------------
T ss_pred ----------cceeeeHH---HHHHHHHH---------------------------------------------------
Confidence 00000000 11100000
Q ss_pred CcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHH-HHHHhhhhhccCCcC---
Q 002337 710 LNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMD-RVVSQMLAEIDGLND--- 785 (934)
Q Consensus 710 ~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~-~v~~~lL~~ldg~~~--- 785 (934)
+-..+.+ ..+...+...++|..+ .|+|+||+|+++.+.++ ..+.+.. .+...||..||+...
T Consensus 229 ---------~e~~~l~-~~~~~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~ 294 (444)
T 1g41_A 229 ---------DEAAKLI-NPEELKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTK 294 (444)
T ss_dssp ---------GGSCSSC-CHHHHHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEET
T ss_pred ---------HHHHHcc-CHHHHHHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccc
Confidence 0000111 1233344555555333 39999999999865432 2233333 377889999998421
Q ss_pred ----CCCCEEEEEEc----CCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHH----HHHhcC-------CCC---cC
Q 002337 786 ----SSQDLFIIGAS----NRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLK----ALTRKF-------KLL---ED 843 (934)
Q Consensus 786 ----~~~~v~vI~aT----Nrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~----~~~~~~-------~~~---~~ 843 (934)
...+|++|+|. +.|..+-|+|+. ||+.+|.++ +.+.++..+|+. .+.+++ ... .+
T Consensus 295 ~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~-~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~ 371 (444)
T 1g41_A 295 HGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELT-ALSAADFERILTEPHASLTEQYKALMATEGVNIAFTT 371 (444)
T ss_dssp TEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECC-CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECH
T ss_pred cceecCCcEEEEeccccccCChhhcchHHhc--ccceeeeCC-CCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECH
Confidence 24578888886 234445588887 999999999 599999999983 122211 111 11
Q ss_pred CCHHHHHhh------CCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhhCCCcCHH
Q 002337 844 VSLYSIAKK------CPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMA 917 (934)
Q Consensus 844 ~~l~~la~~------~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~psvs~~ 917 (934)
--+..+++. .|.+.-++-|+.++..++..++.+.... ....+.|+.+++.+.+ .|-+..+
T Consensus 372 ~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~-----------~~~~~~i~~~~v~~~l---~~~~~~~ 437 (444)
T 1g41_A 372 DAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM-----------NGQTVNIDAAYVADAL---GEVVENE 437 (444)
T ss_dssp HHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGC-----------TTCEEEECHHHHHHHH---TTTTTCH
T ss_pred HHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhcccc-----------CCCeEEEeHHHHHHhc---CccccCC
Confidence 124455553 1355666777777777666666553211 1134678888887655 5667788
Q ss_pred HHHHH
Q 002337 918 ELKKY 922 (934)
Q Consensus 918 ~l~~y 922 (934)
++.+|
T Consensus 438 dl~~~ 442 (444)
T 1g41_A 438 DLSRF 442 (444)
T ss_dssp HHHHH
T ss_pred Chhcc
Confidence 88888
No 65
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.72 E-value=6.7e-18 Score=182.75 Aligned_cols=201 Identities=22% Similarity=0.299 Sum_probs=141.9
Q ss_pred CCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccc-ccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCC
Q 002337 681 LRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI-NMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR 759 (934)
Q Consensus 681 ~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~-~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r 759 (934)
..++.++||+||||||||++|+++|...+.+|+.+++++.+ +...+.....++.+|+.+....+++|||||+|.+++.+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~ 140 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYV 140 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCB
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccC
Confidence 44567999999999999999999999999999999887532 21122333578899999988889999999999998765
Q ss_pred CCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCCh-hhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcC
Q 002337 760 GASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDP-ALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF 838 (934)
Q Consensus 760 ~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~-allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~ 838 (934)
.... .....+++.|+..+++......+++||+|||+++.+|+ .+.+ ||+..|.+|. ++ .|.+|.+.+.+..
T Consensus 141 ~~~~---~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~-l~--~r~~i~~i~~~~~ 212 (272)
T 1d2n_A 141 PIGP---RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPN-IA--TGEQLLEALELLG 212 (272)
T ss_dssp TTTT---BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCC-EE--EHHHHHHHHHHHT
T ss_pred CCCh---hHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCCC-cc--HHHHHHHHHHhcC
Confidence 4322 22356777777778876655678999999999998888 4554 9999988873 32 3455666555543
Q ss_pred CCCcCCCHHHHHhhCCCCC----CHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhhCCC
Q 002337 839 KLLEDVSLYSIAKKCPPNF----TGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPS 913 (934)
Q Consensus 839 ~~~~~~~l~~la~~~t~g~----sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 913 (934)
.+ .+.++..+++. +.|| +-.++.+++..|...| .....++|.+++.+...+
T Consensus 213 ~~-~~~~~~~l~~~-~~g~~~~g~ir~l~~~l~~a~~~~----------------------~~~~~~~~~~~l~~~~~~ 267 (272)
T 1d2n_A 213 NF-KDKERTTIAQQ-VKGKKVWIGIKKLLMLIEMSLQMD----------------------PEYRVRKFLALLREEGAS 267 (272)
T ss_dssp CS-CHHHHHHHHHH-HTTSEEEECHHHHHHHHHHHTTSC----------------------GGGHHHHHHHHHHHTSCC
T ss_pred CC-CHHHHHHHHHH-hcCCCccccHHHHHHHHHHHhhhc----------------------hHHHHHHHHHHHHHcCCc
Confidence 33 34457788888 4787 4455555554432111 124566788887776543
No 66
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.70 E-value=4.7e-17 Score=183.47 Aligned_cols=207 Identities=21% Similarity=0.259 Sum_probs=145.6
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHHcCC--cEEEecCccccccccch------------------------------
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECSL--NFLSVKGPELINMYIGE------------------------------ 727 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~~~~--~~i~v~~~~l~~~~~Ge------------------------------ 727 (934)
+..++.++||+||||||||++|+++|+.++. +|+.+++.++.+.+.+.
T Consensus 66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld 145 (368)
T 3uk6_A 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEID 145 (368)
T ss_dssp TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhh
Confidence 3444679999999999999999999999874 78888887755544333
Q ss_pred -------------------hhhhhHHHHHHHHh---------CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhh
Q 002337 728 -------------------SEKNVRDIFQKARS---------ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAE 779 (934)
Q Consensus 728 -------------------se~~v~~lf~~A~~---------~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ 779 (934)
....++..|..+.. ..|+||||||+|.+. ....+.|+..
T Consensus 146 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~-------------~~~~~~L~~~ 212 (368)
T 3uk6_A 146 VINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLD-------------IESFSFLNRA 212 (368)
T ss_dssp HHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSB-------------HHHHHHHHHH
T ss_pred hhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccC-------------hHHHHHHHHH
Confidence 23445556655433 127899999999985 2345566666
Q ss_pred ccCCcCCCCCEEEEEEc-----------CCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCCc-CCCHH
Q 002337 780 IDGLNDSSQDLFIIGAS-----------NRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLE-DVSLY 847 (934)
Q Consensus 780 ldg~~~~~~~v~vI~aT-----------Nrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~-~~~l~ 847 (934)
++.. ...++++++. |.++.+++++++ ||.. +.++ |++.+++.+|++..+++....- +..+.
T Consensus 213 le~~---~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~-~~~~~e~~~il~~~~~~~~~~~~~~~l~ 285 (368)
T 3uk6_A 213 LESD---MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTT-PYSEKDTKQILRIRCEEEDVEMSEDAYT 285 (368)
T ss_dssp TTCT---TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEEC-CCCHHHHHHHHHHHHHHTTCCBCHHHHH
T ss_pred hhCc---CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEec-CCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5543 2356666554 357889999999 9977 7888 5889999999998887644322 22366
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhh-CCCcCHHHHHHHHH
Q 002337 848 SIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLREL-SPSLSMAELKKYEL 924 (934)
Q Consensus 848 ~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~-~psvs~~~l~~y~~ 924 (934)
.+++. +.+.+.+++.++|+.|+..|..+. ...|+.+|+.+|+..+ ..+.+.+.++.|++
T Consensus 286 ~l~~~-~~~G~~r~~~~ll~~a~~~A~~~~-----------------~~~It~~~v~~a~~~~~~~~~~~~~~~~~~~ 345 (368)
T 3uk6_A 286 VLTRI-GLETSLRYAIQLITAASLVCRKRK-----------------GTEVQVDDIKRVYSLFLDESRSTQYMKEYQD 345 (368)
T ss_dssp HHHHH-HHHSCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHHHHSBCHHHHHHHHC----
T ss_pred HHHHH-hcCCCHHHHHHHHHHHHHHHHHhC-----------------CCCCCHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 77777 355789999999999998886542 2369999999999984 44444555555544
No 67
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.70 E-value=2.4e-17 Score=195.68 Aligned_cols=204 Identities=21% Similarity=0.262 Sum_probs=137.1
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccc---------cccchhhhhhHHHHHHHHhCCCcEEEecccc
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN---------MYIGESEKNVRDIFQKARSARPCVIFFDELD 753 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~---------~~~Gese~~v~~lf~~A~~~~p~vlfiDEid 753 (934)
++..++|+||||||||++|+++|..++.+++.+++..+.. .|+|.....+...|..+....| |+||||+|
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid 185 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEID 185 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhh
Confidence 4678999999999999999999999999999998876543 6888888889999998877766 99999999
Q ss_pred ccccCCCCCCCCchhHHHHHHhhhhhccCCcCC------------CCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCC
Q 002337 754 SLAPARGASGDSGGVMDRVVSQMLAEIDGLNDS------------SQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVN 821 (934)
Q Consensus 754 ~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~------------~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~P 821 (934)
.+.+.+. ....+.||..||..... ..++++|+|||+++.+||+|++ ||+ .|+++.
T Consensus 186 ~l~~~~~---------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~- 252 (543)
T 3m6a_A 186 KMSSDFR---------GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAG- 252 (543)
T ss_dssp SCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCC-
T ss_pred hhhhhhc---------cCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCC-
Confidence 9986542 12456777777643211 1568999999999999999999 995 789995
Q ss_pred CCHHHHHHHHHHHHh-----cCCCCc------CCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccc
Q 002337 822 SDVSYRERVLKALTR-----KFKLLE------DVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRI 890 (934)
Q Consensus 822 p~~~~r~~Il~~~~~-----~~~~~~------~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~ 890 (934)
|+.+++..|++.++. ...+.. +..+..++..++.....++|++.+..++..|..+.+...
T Consensus 253 ~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~--------- 323 (543)
T 3m6a_A 253 YTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEE--------- 323 (543)
T ss_dssp CCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTC---------
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcC---------
Confidence 788999999987652 222211 112455555433334556777666666666655544311
Q ss_pred cccCcccccHHHHHHHHHhhC
Q 002337 891 DQADSVVVEYDDFVKVLRELS 911 (934)
Q Consensus 891 ~~~~~~~it~~df~~al~~~~ 911 (934)
.....|+.+|+.+++...+
T Consensus 324 --~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 324 --RKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp --CSCCEECTTTTHHHHCSCC
T ss_pred --CcceecCHHHHHHHhCCcc
Confidence 1335689999999886543
No 68
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.70 E-value=3.2e-18 Score=196.02 Aligned_cols=136 Identities=18% Similarity=0.266 Sum_probs=60.7
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccc-cccch-hhhhhHHHHHHHHhCCCcEEEeccccccccCCC
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN-MYIGE-SEKNVRDIFQKARSARPCVIFFDELDSLAPARG 760 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~-~~~Ge-se~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~ 760 (934)
++.++||+||||||||++|+++|..++.+|+.++++.+.+ .|+|+ .+..++.+|+.|+.. +++||++.+...
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~----~~~De~d~~~~~-- 122 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL----VRQQEIAKNRAR-- 122 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH----HHHHHHHSCC----
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhc----chhhhhhhhhcc--
Confidence 4689999999999999999999999999999999999988 59996 789999999998775 458999887532
Q ss_pred CCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEE-cCCCCCCChhhhCCCCcceeeeecCCCCHH-HHHHHH
Q 002337 761 ASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGA-SNRPDLIDPALLRPGRFDKLLYVGVNSDVS-YRERVL 831 (934)
Q Consensus 761 ~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~a-TNrp~~lD~allrpGRfd~~i~v~~Pp~~~-~r~~Il 831 (934)
..++..++++++||.+|||+... ..| +++ ||+|+.||+||+||||||+.|+|++ |+.. .|.+|+
T Consensus 123 ---~~~~~e~rvl~~LL~~~dg~~~~-~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~l-P~~~~~~~ei~ 188 (444)
T 1g41_A 123 ---AEDVAEERILDALLPPAKNQWGE-VEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDV-SAGVSMGVEIM 188 (444)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ---chhhHHHHHHHHHHHHhhccccc-ccc--ccccccCHHHHHHHHHcCCCcceEEEEcC-CCCccchhhhh
Confidence 22345689999999999999653 333 455 9999999999999999999999998 5544 677775
No 69
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.69 E-value=3.4e-17 Score=184.88 Aligned_cols=212 Identities=21% Similarity=0.328 Sum_probs=147.5
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccccc-ccchh-hhhhHHHHHHH----HhCCCcEEEeccccccc
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINM-YIGES-EKNVRDIFQKA----RSARPCVIFFDELDSLA 756 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~-~~Ges-e~~v~~lf~~A----~~~~p~vlfiDEid~l~ 756 (934)
++.++||+||||||||++|+++|..++.+|+.++++++... |+|+. +..++.+|..+ ....++||||||+|.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 46899999999999999999999999999999999998754 88887 66678888876 44568899999999999
Q ss_pred cCCCCCCCCchhH-HHHHHhhhhhccCCcC------------------CCCCEEEEEEcCCC----------CC------
Q 002337 757 PARGASGDSGGVM-DRVVSQMLAEIDGLND------------------SSQDLFIIGASNRP----------DL------ 801 (934)
Q Consensus 757 ~~r~~~~~~~~~~-~~v~~~lL~~ldg~~~------------------~~~~v~vI~aTNrp----------~~------ 801 (934)
+.|.+.+...... .++++.||..|||... ...++++|+++|.. ..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf 209 (363)
T 3hws_A 130 RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF 209 (363)
T ss_dssp CCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC----
T ss_pred ccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCc
Confidence 8876544333333 3489999999995310 11234444444432 11
Q ss_pred -----------------------------CChhhhCCCCcceeeeecCCCCHHHHHHHHHH----HHhc-------CCCC
Q 002337 802 -----------------------------IDPALLRPGRFDKLLYVGVNSDVSYRERVLKA----LTRK-------FKLL 841 (934)
Q Consensus 802 -----------------------------lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~----~~~~-------~~~~ 841 (934)
++|+|+. ||+..+.++ |++.+++.+|+.. +.++ ....
T Consensus 210 ~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~-pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~ 286 (363)
T 3hws_A 210 GATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN-ELSEEALIQILKEPKNALTKQYQALFNLEGVD 286 (363)
T ss_dssp --------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC-CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCE
T ss_pred cccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCce
Confidence 7888888 999999888 5899999999876 3322 1211
Q ss_pred cCC---CHHHHHhh-CCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHH
Q 002337 842 EDV---SLYSIAKK-CPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVL 907 (934)
Q Consensus 842 ~~~---~l~~la~~-~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al 907 (934)
..+ -+..+++. ....+.+++|++++.++...++.+.... +......|+.+++++.+
T Consensus 287 l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~----------~~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 287 LEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSM----------EDVEKVVIDESVIDGQS 346 (363)
T ss_dssp EEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTC----------CCSEEEECHHHHTTCCS
T ss_pred EEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccc----------cCCceeEEcHHHHhCcC
Confidence 112 24566653 1355667999999999988887653211 11123467777666554
No 70
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.68 E-value=1.5e-16 Score=174.34 Aligned_cols=214 Identities=20% Similarity=0.301 Sum_probs=149.3
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccc-cccchh-hhhhHHHHHHH-----HhCCCcEEEecccccc
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN-MYIGES-EKNVRDIFQKA-----RSARPCVIFFDELDSL 755 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~-~~~Ges-e~~v~~lf~~A-----~~~~p~vlfiDEid~l 755 (934)
.+.+++|+||||||||++|+++|+.++.+++.++++++.. .|+|.. +..++++|..+ +...++||||||+|.+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhc
Confidence 4679999999999999999999999999999999998876 677754 34567776643 1124689999999999
Q ss_pred ccCCCCCCCCchhHHHHHHhhhhhccCCcC-------CCCCEEEEEE----cCCCCCCChhhhCCCCcceeeeecCCCCH
Q 002337 756 APARGASGDSGGVMDRVVSQMLAEIDGLND-------SSQDLFIIGA----SNRPDLIDPALLRPGRFDKLLYVGVNSDV 824 (934)
Q Consensus 756 ~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~-------~~~~v~vI~a----TNrp~~lD~allrpGRfd~~i~v~~Pp~~ 824 (934)
.+.+...+ .......+.+.|+..|++... ...++++|++ ++.++.++|++++ ||+..++++ |++.
T Consensus 129 ~~~~~~~~-~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~-~~~~ 204 (310)
T 1ofh_A 129 CKKGEYSG-ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELT-ALSA 204 (310)
T ss_dssp SCCSSCCS-SHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECC-CCCH
T ss_pred Cccccccc-cchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcC-CcCH
Confidence 87764221 111223456778887776420 1246788888 5678899999998 999889999 4888
Q ss_pred HHHHHHHHH----HH-------hcCCC---CcCCCHHHHHhhCC------CCCCHHHHHHHHHHHHHHHHHHHhcccCCC
Q 002337 825 SYRERVLKA----LT-------RKFKL---LEDVSLYSIAKKCP------PNFTGADMYALCADAWFHAAKRKVLSSDSN 884 (934)
Q Consensus 825 ~~r~~Il~~----~~-------~~~~~---~~~~~l~~la~~~t------~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~ 884 (934)
+++.+|++. +. +.... ..+..+..+++.+. ++.+.+++.++|..+...+.-+....
T Consensus 205 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~---- 280 (310)
T 1ofh_A 205 ADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM---- 280 (310)
T ss_dssp HHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGC----
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccc----
Confidence 999999982 22 11221 11222556666521 25788999999988776654332110
Q ss_pred CCCccccccCcccccHHHHHHHHHhhC
Q 002337 885 SDSSRIDQADSVVVEYDDFVKVLRELS 911 (934)
Q Consensus 885 ~~~~~~~~~~~~~it~~df~~al~~~~ 911 (934)
......|+.+|+.+|+....
T Consensus 281 -------~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 281 -------NGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp -------TTCEEEECHHHHHHHTCSSS
T ss_pred -------cCCEEEEeeHHHHHHHHhhh
Confidence 11234599999999998764
No 71
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.65 E-value=5.6e-15 Score=198.94 Aligned_cols=140 Identities=19% Similarity=0.409 Sum_probs=97.7
Q ss_pred CCcceecCCCCCcchHHHH-HHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHH---------------hCCCcEE
Q 002337 684 RSGVLLYGPPGTGKTLLAK-AVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKAR---------------SARPCVI 747 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lak-alA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~---------------~~~p~vl 747 (934)
+.++||+||||||||++|+ +++...+..++.++.+...+ ...+...++..- ...++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 5689999999999999994 55555577788887654422 123344444320 2345799
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCC-------CCEEEEEEcCCCC-----CCChhhhCCCCccee
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSS-------QDLFIIGASNRPD-----LIDPALLRPGRFDKL 815 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~-------~~v~vI~aTNrp~-----~lD~allrpGRfd~~ 815 (934)
||||++.-...+. |.+ ...+++.|++ +..|..... .++.+|||||+|. .|||+++| || ..
T Consensus 1341 FiDEinmp~~d~y--g~q--~~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~v 1412 (2695)
T 4akg_A 1341 FCDEINLPKLDKY--GSQ--NVVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AI 1412 (2695)
T ss_dssp EEETTTCSCCCSS--SCC--HHHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EE
T ss_pred Eeccccccccccc--Cch--hHHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eE
Confidence 9999997544432 222 2356777776 334432211 3689999999994 89999999 99 78
Q ss_pred eeecCCCCHHHHHHHHHHHHhcC
Q 002337 816 LYVGVNSDVSYRERVLKALTRKF 838 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~ 838 (934)
++++. |+.+++..|++.+++.+
T Consensus 1413 i~i~~-P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1413 LYLGY-PSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp EECCC-CTTTHHHHHHHHHHHHH
T ss_pred EEeCC-CCHHHHHHHHHHHHHHH
Confidence 99997 78899999998887643
No 72
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.62 E-value=1.4e-14 Score=161.30 Aligned_cols=187 Identities=20% Similarity=0.255 Sum_probs=134.9
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCC
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGAS 762 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~ 762 (934)
+..++||+||||||||++|+++|+..+.+|+.++++.+. ....+...+.. ...+++|||||+|.+.+
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~----- 120 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTN--LSEGDILFIDEIHRLSP----- 120 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHT--CCTTCEEEEETGGGCCH-----
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHh--ccCCCEEEEechhhcCH-----
Confidence 356899999999999999999999999999999987652 22334444443 35678999999999852
Q ss_pred CCCchhHHHHHHhhhhhccCCc---------------CCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHH
Q 002337 763 GDSGGVMDRVVSQMLAEIDGLN---------------DSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYR 827 (934)
Q Consensus 763 ~~~~~~~~~v~~~lL~~ldg~~---------------~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r 827 (934)
.+.+.|+..|+... ....++++|+|||++..++++|++ ||+..+.++. |+.+++
T Consensus 121 --------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~-~~~~e~ 189 (338)
T 3pfi_A 121 --------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEF-YKDSEL 189 (338)
T ss_dssp --------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCC-CCHHHH
T ss_pred --------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCC-cCHHHH
Confidence 23444444444321 001148999999999999999999 9999999995 888999
Q ss_pred HHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHH
Q 002337 828 ERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKV 906 (934)
Q Consensus 828 ~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~a 906 (934)
..|++...++....-+ ..+..+++.+ . -+.+++.+++..|...|..+. ...|+.+++..+
T Consensus 190 ~~il~~~~~~~~~~~~~~~~~~l~~~~-~-G~~r~l~~~l~~~~~~a~~~~-----------------~~~i~~~~~~~~ 250 (338)
T 3pfi_A 190 ALILQKAALKLNKTCEEKAALEIAKRS-R-STPRIALRLLKRVRDFADVND-----------------EEIITEKRANEA 250 (338)
T ss_dssp HHHHHHHHHHTTCEECHHHHHHHHHTT-T-TCHHHHHHHHHHHHHHHHHTT-----------------CSEECHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHH-C-cCHHHHHHHHHHHHHHHHhhc-----------------CCccCHHHHHHH
Confidence 9999988887654322 2356677753 4 456888899888776554221 124677777777
Q ss_pred HHhhCC
Q 002337 907 LRELSP 912 (934)
Q Consensus 907 l~~~~p 912 (934)
+.....
T Consensus 251 ~~~~~~ 256 (338)
T 3pfi_A 251 LNSLGV 256 (338)
T ss_dssp HHHHTC
T ss_pred HHHhCC
Confidence 776544
No 73
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.61 E-value=4.1e-15 Score=163.41 Aligned_cols=182 Identities=15% Similarity=0.198 Sum_probs=132.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC-------CcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhh
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLG-------IHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDV 467 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg-------~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~ 467 (934)
+.+.++||+||||||||++++++|+.++ .+++.+++.++.+.+.+.....+...|..+. +++|||||+|.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~ 141 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYY 141 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHT---TSEEEEETGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcC---CCEEEEEChhh
Confidence 4556899999999999999999999983 3899999999998888888888888888873 68999999999
Q ss_pred ccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-----CCChhhhc
Q 002337 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPTIRR 542 (934)
Q Consensus 468 L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~-----~Ld~aLrr 542 (934)
+...+.. .....++...|..+++. ...++++|++||... .++|++++
T Consensus 142 l~~~~~~-------~~~~~~~~~~Ll~~l~~---------------------~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 193 (309)
T 3syl_A 142 LYRPDNE-------RDYGQEAIEILLQVMEN---------------------NRDDLVVILAGYADRMENFFQSNPGFRS 193 (309)
T ss_dssp SCCCC----------CCTHHHHHHHHHHHHH---------------------CTTTCEEEEEECHHHHHHHHHHSTTHHH
T ss_pred hccCCCc-------ccccHHHHHHHHHHHhc---------------------CCCCEEEEEeCChHHHHHHHhhCHHHHH
Confidence 9753211 11223444444444321 145678889987653 25789999
Q ss_pred ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhc------CC-CChHHHHHHHHHHHHHHHHh
Q 002337 543 CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQT------SG-FMPRDLHALVADAGANLIRK 611 (934)
Q Consensus 543 rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t------~G-fv~~DL~~L~~~A~~~ai~r 611 (934)
||+..+.+++|+.+++.+|++.+++.... ..+ ...+..++... .. -..+++..+++.|...+..+
T Consensus 194 R~~~~i~~~~~~~~~~~~il~~~l~~~~~---~~~-~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r 265 (309)
T 3syl_A 194 RIAHHIEFPDYSDEELFEIAGHMLDDQNY---QMT-PEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANR 265 (309)
T ss_dssp HEEEEEEECCCCHHHHHHHHHHHHHHTTC---EEC-HHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCeEEEcCCcCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998865432 111 23334444431 22 34789999999887766554
No 74
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.60 E-value=2e-14 Score=193.61 Aligned_cols=326 Identities=16% Similarity=0.203 Sum_probs=180.3
Q ss_pred CceEEEECCCCCcHHHHHHH-HHHHhCCcEEEEecCccccccccchHHHHHHHHHHhh---------------cCCCEEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRY-VARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQ---------------SYSPTIL 460 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLara-lA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~---------------~~~P~IL 460 (934)
+.+|||+||||||||++|+. ++...+..+..++++...+ ...+...++... ...++|+
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 45799999999999999954 5544477888888875433 233444444321 1234799
Q ss_pred EEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-----C
Q 002337 461 LLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----G 535 (934)
Q Consensus 461 ~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~-----~ 535 (934)
||||+|.-.. +..| .....++|+++++. +|++.........-.++.+|||||.+. .
T Consensus 1341 FiDEinmp~~--d~yg--------~q~~lelLRq~le~---------gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~ 1401 (2695)
T 4akg_A 1341 FCDEINLPKL--DKYG--------SQNVVLFLRQLMEK---------QGFWKTPENKWVTIERIHIVGACNPPTDPGRIP 1401 (2695)
T ss_dssp EEETTTCSCC--CSSS--------CCHHHHHHHHHHHT---------SSEECTTTCCEEEEESEEEEEEECCTTSTTCCC
T ss_pred Eecccccccc--cccC--------chhHHHHHHHHHhc---------CCEEEcCCCcEEEecCEEEEEecCCCccCCCcc
Confidence 9999995332 2222 23456677777653 122211111122235789999999984 6
Q ss_pred CChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCc---------hHHHHHHHhh------cC-CCChHHHHH
Q 002337 536 LPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS---------EEFVKDIIGQ------TS-GFMPRDLHA 599 (934)
Q Consensus 536 Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~---------~~~L~~la~~------t~-Gfv~~DL~~ 599 (934)
|+++++|+| ..+.++.|+.+++..|++.+++..-...+++.. ......+... .| -|+.+|+..
T Consensus 1402 l~~rllRrf-~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsr 1480 (2695)
T 4akg_A 1402 MSERFTRHA-AILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTR 1480 (2695)
T ss_dssp CCHHHHTTE-EEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHH
T ss_pred CChhhhhee-eEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHH
Confidence 999999999 699999999999999999887543221111110 0111112111 12 288999988
Q ss_pred HHHHHHH-------------------HHHHhhcccccCCCCCch-h-hhhh--------hhccCcch------------h
Q 002337 600 LVADAGA-------------------NLIRKSNSEVDKNEPGES-D-LTAK--------VAHNDNSS------------I 638 (934)
Q Consensus 600 L~~~A~~-------------------~ai~r~~~~~~~~~~~~~-~-l~~~--------~~~~~~~~------------~ 638 (934)
+++-... ++.|-.. |+.....+ . +... ........ .
T Consensus 1481 v~qGll~~~~~~~~~~~~~l~rLw~HE~~Rvf~---DRLv~~~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~df~~ 1557 (2695)
T 4akg_A 1481 LVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFA---DRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLS 1557 (2695)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHT---TTCCSSHHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCEESSSS
T ss_pred HHHHHHhcCchhhhccHHHHHHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHHhcccchhhhccCCceeeecCC
Confidence 7753221 1111111 11110000 0 0000 00000000 0
Q ss_pred hhhhcCCHHHHHHHHHhhhcccccccCCCC-----CccchhHHhhc-CCCCCCcceecCCCCCcchHHHHHHHHHcCCcE
Q 002337 639 AATQVMGKEDLVKAMERSKKRNASALGAPK-----LPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNF 712 (934)
Q Consensus 639 ~~~~~i~~ed~~~aL~~~k~~~~~~i~~pk-----~pl~~~~~~~~-~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~ 712 (934)
..-..+..+++...++..-..+...-.... ..+.|--.+.+ -..++.++||+|++|+||++++|..|..++..+
T Consensus 1558 ~~Y~~v~~~~l~~~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~ 1637 (2695)
T 4akg_A 1558 LDFKEVNKTDLVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKI 1637 (2695)
T ss_dssp SSCEECCHHHHHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEE
T ss_pred CcceecCHHHHHHHHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCee
Confidence 000112233333333222111111100111 11222222222 335678999999999999999999999999999
Q ss_pred EEecCccccccccchhhhhhHHHHHHHH-hCCCcEEEecccc
Q 002337 713 LSVKGPELINMYIGESEKNVRDIFQKAR-SARPCVIFFDELD 753 (934)
Q Consensus 713 i~v~~~~l~~~~~Gese~~v~~lf~~A~-~~~p~vlfiDEid 753 (934)
+.+..+.-++ ..+-...++.++.+|. ...|.+++|+|..
T Consensus 1638 fqi~~~~~Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1677 (2695)
T 4akg_A 1638 VQPKIHRHSN--LSDFDMILKKAISDCSLKESRTCLIIDESN 1677 (2695)
T ss_dssp ECCCCCTTCC--HHHHHHHHHHHHHHHHHSCCCEEEEEETTT
T ss_pred EEEEeeCCCC--HHHHHHHHHHHHHHcCCCCCceEEEEeccc
Confidence 9988543211 1233466899999985 4677888888753
No 75
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.57 E-value=3.1e-14 Score=157.30 Aligned_cols=207 Identities=21% Similarity=0.299 Sum_probs=138.4
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCC
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGAS 762 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~ 762 (934)
.+.+++|+||||||||++|+++++.++.+|+.++++.+.. ...+...|..+ ...+++|||||+|.+...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~---- 105 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS-LEEGDILFIDEIHRLSRQ---- 105 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT-CCTTCEEEETTTTSCCHH----
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh-ccCCCEEEEECCcccccc----
Confidence 3578999999999999999999999999999999876622 12222333221 256789999999988521
Q ss_pred CCCchhHHHHHHhhhhhccCCc--------C-------CCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHH
Q 002337 763 GDSGGVMDRVVSQMLAEIDGLN--------D-------SSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYR 827 (934)
Q Consensus 763 ~~~~~~~~~v~~~lL~~ldg~~--------~-------~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r 827 (934)
....|+..++... . ...++.+|++||+++.+++++++ ||+..+.++. |+.+++
T Consensus 106 ---------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~-~~~~e~ 173 (324)
T 1hqc_A 106 ---------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEY-YTPEEL 173 (324)
T ss_dssp ---------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCC-CCHHHH
T ss_pred ---------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCC-CCHHHH
Confidence 2222332222110 0 01257899999999999999998 9998999995 778889
Q ss_pred HHHHHHHHhcCCCCc-CCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHH
Q 002337 828 ERVLKALTRKFKLLE-DVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKV 906 (934)
Q Consensus 828 ~~Il~~~~~~~~~~~-~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~a 906 (934)
..+++.+.++.+..- +..+..++..+ .|+ .+++.++++.|...|..+ ....|+.+++..+
T Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~l~~~~-~G~-~r~l~~~l~~~~~~a~~~-----------------~~~~i~~~~~~~~ 234 (324)
T 1hqc_A 174 AQGVMRDARLLGVRITEEAALEIGRRS-RGT-MRVAKRLFRRVRDFAQVA-----------------GEEVITRERALEA 234 (324)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHS-CSC-HHHHHHHHHHHTTTSTTT-----------------SCSCCCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHc-cCC-HHHHHHHHHHHHHHHHHh-----------------cCCCCCHHHHHHH
Confidence 999998887655432 22366777874 554 478888887654333210 1124677777777
Q ss_pred HHhhCC---CcCHHHHHHHHHHHHHhcc
Q 002337 907 LRELSP---SLSMAELKKYELLRDQFEG 931 (934)
Q Consensus 907 l~~~~p---svs~~~l~~y~~~~~~~~~ 931 (934)
+..... +++..|.+.+..+.+.+.+
T Consensus 235 ~~~~~~~~~~l~~~e~~~i~~~~~~~~g 262 (324)
T 1hqc_A 235 LAALGLDELGLEKRDREILEVLILRFGG 262 (324)
T ss_dssp HHHHTCCTTCCCHHHHHHHHHHHHHSCS
T ss_pred HHHhcccccCCCHHHHHHHHHHHHHhcC
Confidence 766542 3455555566665555543
No 76
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.7e-15 Score=166.84 Aligned_cols=200 Identities=14% Similarity=0.123 Sum_probs=136.7
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHc----------CCcEEEecCcccccc----------c------cchhhhhhHHH
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELINM----------Y------IGESEKNVRDI 735 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~~~----------~------~Gese~~v~~l 735 (934)
..+.+++|+||||||||++++++++++ ...+++++|..+.+. + .|++...++.+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 357899999999999999999999988 457899998765443 1 23455678888
Q ss_pred HHHH--HhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCC----ChhhhCC
Q 002337 736 FQKA--RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLI----DPALLRP 809 (934)
Q Consensus 736 f~~A--~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~l----D~allrp 809 (934)
|+.. ....++||||||+|.+. . ..++..|+..... ...++.||+++|..+.. ++++++
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~-~-----------q~~L~~l~~~~~~---~~s~~~vI~i~n~~d~~~~~L~~~v~S- 186 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL-S-----------EKILQYFEKWISS---KNSKLSIICVGGHNVTIREQINIMPSL- 186 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC-C-----------THHHHHHHHHHHC---SSCCEEEEEECCSSCCCHHHHHTCHHH-
T ss_pred HHHhhhccCCceEEEEecHHHhh-c-----------chHHHHHHhcccc---cCCcEEEEEEecCcccchhhcchhhhc-
Confidence 8875 45678999999999997 1 2466666654321 24579999999998754 445566
Q ss_pred CCcc-eeeeecCCCCHHHHHHHHHHHHhcCCCC------------------------------------cCCCHHHHHhh
Q 002337 810 GRFD-KLLYVGVNSDVSYRERVLKALTRKFKLL------------------------------------EDVSLYSIAKK 852 (934)
Q Consensus 810 GRfd-~~i~v~~Pp~~~~r~~Il~~~~~~~~~~------------------------------------~~~~l~~la~~ 852 (934)
||. ..|.|+ |++.++..+|++..++...-. .+.-+..+|+.
T Consensus 187 -R~~~~~i~F~-pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~ 264 (318)
T 3te6_A 187 -KAHFTEIKLN-KVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKN 264 (318)
T ss_dssp -HTTEEEEECC-CCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHH
T ss_pred -cCCceEEEeC-CCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHH
Confidence 887 678888 699999999998888764210 11114445553
Q ss_pred CCCCCCHHHHH---HHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHh
Q 002337 853 CPPNFTGADMY---ALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRE 909 (934)
Q Consensus 853 ~t~g~sgaDl~---~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~ 909 (934)
. ....+|++ .+|+.|+..|-++.+..... ......||.+++.++..+
T Consensus 265 v--A~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~--------~~~~~~i~~~~~~~~~~~ 314 (318)
T 3te6_A 265 V--ANVSGSTEKAFKICEAAVEISKKDFVRKGGL--------QKGKLVVSQEMVPRYFSE 314 (318)
T ss_dssp H--HHHHCSHHHHHHHHHHHHHHHHHHHHHHTTE--------ETTEECCSEECCTHHHHH
T ss_pred H--HhhCChHHHHHHHHHHHHHHHHHHHHhccCC--------CCCcEEeeHHHHHHHHHH
Confidence 1 22345665 67888988887776544221 123446676666665554
No 77
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.54 E-value=3.4e-14 Score=153.56 Aligned_cols=176 Identities=18% Similarity=0.220 Sum_probs=122.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccc-cccccchHHHHHHHHHHhhcCCCEEEEEcchhhcccccc
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLM-ASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVS 473 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~-~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~ 473 (934)
..+.++||+||||||||++|+++|+.++.+++.++|++.. +...+.....++..|..+....+++|||||+|.+...+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~ 141 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP 141 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCC
Confidence 4456899999999999999999999999999999987533 222233446788889988877899999999999875321
Q ss_pred CCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCCh-hhhcccceEEEcCC
Q 002337 474 NESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPP-TIRRCFSHEISMGP 552 (934)
Q Consensus 474 ~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~-aLrrrF~~eI~i~~ 552 (934)
. .......+...|..+++.. .....++++|+|||.++.+++ .+++||...+.+|+
T Consensus 142 ~------~~~~~~~~l~~L~~~~~~~------------------~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~ 197 (272)
T 1d2n_A 142 I------GPRFSNLVLQALLVLLKKA------------------PPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPN 197 (272)
T ss_dssp T------TTBCCHHHHHHHHHHTTCC------------------CSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCC
T ss_pred C------ChhHHHHHHHHHHHHhcCc------------------cCCCCCEEEEEecCChhhcchhhhhcccceEEcCCC
Confidence 1 1123345666666654321 012467899999999988887 67889998999987
Q ss_pred CCH-HHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCC----ChHHHHHHHHH
Q 002337 553 LTE-QQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGF----MPRDLHALVAD 603 (934)
Q Consensus 553 Pde-~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gf----v~~DL~~L~~~ 603 (934)
+++ ++...++.. .. .. ....+..++..+.|| ..+++..+++.
T Consensus 198 l~~r~~i~~i~~~---~~-----~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~ 244 (272)
T 1d2n_A 198 IATGEQLLEALEL---LG-----NF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEM 244 (272)
T ss_dssp EEEHHHHHHHHHH---HT-----CS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHH
T ss_pred ccHHHHHHHHHHh---cC-----CC-CHHHHHHHHHHhcCCCccccHHHHHHHHHH
Confidence 776 444444432 11 11 245678889999887 34444444443
No 78
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.54 E-value=2.3e-14 Score=177.12 Aligned_cols=223 Identities=20% Similarity=0.307 Sum_probs=155.9
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHc----------CCcEEEecCcccc--ccccchhhhhhHHHHHHHHhCCCcEEEe
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELI--NMYIGESEKNVRDIFQKARSARPCVIFF 749 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~--~~~~Gese~~v~~lf~~A~~~~p~vlfi 749 (934)
..+.+++|+||||||||++|+++|..+ +..++.++...+. .+|.|+.+..++.+|+.++...++||||
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~I 284 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFI 284 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEE
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEE
Confidence 456789999999999999999999886 6678888888776 4688999999999999998888999999
Q ss_pred ccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC-----CCChhhhCCCCcceeeeecCCCCH
Q 002337 750 DELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNSDV 824 (934)
Q Consensus 750 DEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~-----~lD~allrpGRfd~~i~v~~Pp~~ 824 (934)
||+|.+.++++..+.. ..+.+.|...++ ...+.+|++||.++ .+|++|.| ||+ .+.++. |+.
T Consensus 285 DEi~~l~~~~~~~~~~----~~~~~~L~~~l~-----~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~-p~~ 351 (758)
T 1r6b_X 285 DEIHTIIGAGAASGGQ----VDAANLIKPLLS-----SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITE-PSI 351 (758)
T ss_dssp TTTTTTTTSCCSSSCH----HHHHHHHSSCSS-----SCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCC-CCH
T ss_pred echHHHhhcCCCCcch----HHHHHHHHHHHh-----CCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCC-CCH
Confidence 9999998775432111 223333333332 24678999998753 57899999 998 689996 889
Q ss_pred HHHHHHHHHHHhcCCCCcCC-----CHHHHHhh----CCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCc
Q 002337 825 SYRERVLKALTRKFKLLEDV-----SLYSIAKK----CPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADS 895 (934)
Q Consensus 825 ~~r~~Il~~~~~~~~~~~~~-----~l~~la~~----~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~ 895 (934)
+++.+||+.+.+++.....+ .+..++.. .+..|...++..++.+|+..+... .. ....
T Consensus 352 ~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~---~~----------~~~~ 418 (758)
T 1r6b_X 352 EETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLM---PV----------SKRK 418 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHS---SS----------CCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcc---cc----------cccC
Confidence 99999999887653211111 23444433 234455667888888876433211 00 0122
Q ss_pred ccccHHHHHHHHHhhCC----CcCHHHHHHHHHHHHHhc
Q 002337 896 VVVEYDDFVKVLRELSP----SLSMAELKKYELLRDQFE 930 (934)
Q Consensus 896 ~~it~~df~~al~~~~p----svs~~~l~~y~~~~~~~~ 930 (934)
..|+.+|+.+++..... .+++++...+..+.+.+.
T Consensus 419 ~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~ 457 (758)
T 1r6b_X 419 KTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLK 457 (758)
T ss_dssp CSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHH
Confidence 36899999999988642 566677777777666554
No 79
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.53 E-value=2.3e-14 Score=165.84 Aligned_cols=193 Identities=16% Similarity=0.270 Sum_probs=136.2
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc-----CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccC
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPA 758 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~ 758 (934)
+.+++||||||||||++|+++++.+ +.+++++++.++...+.+.........|.......|+||||||++.+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 5689999999999999999999988 88899999988866665544443334454444437899999999999743
Q ss_pred CCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCC---CChhhhCCCCcc--eeeeecCCCCHHHHHHHHHH
Q 002337 759 RGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL---IDPALLRPGRFD--KLLYVGVNSDVSYRERVLKA 833 (934)
Q Consensus 759 r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~---lD~allrpGRfd--~~i~v~~Pp~~~~r~~Il~~ 833 (934)
+ .....++..++.+.. .+..+||++.+.+.. +++++++ ||+ ..+.++ ||+.++|.+|++.
T Consensus 210 ~-----------~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~-~p~~e~r~~iL~~ 274 (440)
T 2z4s_A 210 T-----------GVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLE-PPDEETRKSIARK 274 (440)
T ss_dssp H-----------HHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCC-CCCHHHHHHHHHH
T ss_pred h-----------HHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeC-CCCHHHHHHHHHH
Confidence 1 112222222222222 234566666555654 8899999 997 678888 5889999999988
Q ss_pred HHhcCC--CCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhhC
Q 002337 834 LTRKFK--LLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELS 911 (934)
Q Consensus 834 ~~~~~~--~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 911 (934)
..+..+ +.+++ +..++..+ +-+.+++.+++..|...|... ...|+.+++.++++...
T Consensus 275 ~~~~~~~~i~~e~-l~~la~~~--~gn~R~l~~~L~~~~~~a~~~------------------~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 275 MLEIEHGELPEEV-LNFVAENV--DDNLRRLRGAIIKLLVYKETT------------------GKEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHTCCCCTTH-HHHHHHHC--CSCHHHHHHHHHHHHHHHHHS------------------SSCCCHHHHHHHTSTTT
T ss_pred HHHHcCCCCCHHH-HHHHHHhc--CCCHHHHHHHHHHHHHHHHHh------------------CCCCCHHHHHHHHHHHh
Confidence 877543 43333 67888884 458899999999887766421 11478888888888776
Q ss_pred C
Q 002337 912 P 912 (934)
Q Consensus 912 p 912 (934)
+
T Consensus 334 ~ 334 (440)
T 2z4s_A 334 K 334 (440)
T ss_dssp C
T ss_pred h
Confidence 4
No 80
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.53 E-value=1.2e-13 Score=155.72 Aligned_cols=198 Identities=18% Similarity=0.156 Sum_probs=135.6
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---------CCcEEEecCcccccc----------------ccchhhhh-hHHHH
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---------SLNFLSVKGPELINM----------------YIGESEKN-VRDIF 736 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---------~~~~i~v~~~~l~~~----------------~~Gese~~-v~~lf 736 (934)
.+.+++|+||||||||++++++++.+ +..++.+++....+. +.|.+... ...++
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 122 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLV 122 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 46789999999999999999999887 788999998754321 11222222 44455
Q ss_pred HHHHh-CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCC---CCCChhhhCCCCc
Q 002337 737 QKARS-ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP---DLIDPALLRPGRF 812 (934)
Q Consensus 737 ~~A~~-~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp---~~lD~allrpGRf 812 (934)
+.... ..|++|||||+|.+...+ ....++..++..++.... ..++.+|++||.+ +.+++++++ ||
T Consensus 123 ~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~~~~~~~~-~~~~~~I~~t~~~~~~~~l~~~l~~--r~ 191 (387)
T 2v1u_A 123 KRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITRINQELGD-RVWVSLVGITNSLGFVENLEPRVKS--SL 191 (387)
T ss_dssp HHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHHGGGCC------CEEEEECSCSTTSSSSCHHHHT--TT
T ss_pred HHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhhchhhcCC-CceEEEEEEECCCchHhhhCHHHHh--cC
Confidence 54433 348899999999997442 024567777777665421 3568899999998 678999999 99
Q ss_pred ce-eeeecCCCCHHHHHHHHHHHHhc----CCCCcCCCHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 002337 813 DK-LLYVGVNSDVSYRERVLKALTRK----FKLLEDVSLYSIAKKCPP--NFTGADMYALCADAWFHAAKRKVLSSDSNS 885 (934)
Q Consensus 813 d~-~i~v~~Pp~~~~r~~Il~~~~~~----~~~~~~~~l~~la~~~t~--g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~ 885 (934)
.. .+.++ |++.++..+|++..++. ..+. +..+..+++.+ . .-....+.++|+.|+..|..+.
T Consensus 192 ~~~~i~l~-~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~-~~~~G~~r~~~~~l~~a~~~a~~~~-------- 260 (387)
T 2v1u_A 192 GEVELVFP-PYTAPQLRDILETRAEEAFNPGVLD-PDVVPLCAALA-AREHGDARRALDLLRVAGEIAERRR-------- 260 (387)
T ss_dssp TSEECCBC-CCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHHHHHHH-HSSSCCHHHHHHHHHHHHHHHHHTT--------
T ss_pred CCeEEeeC-CCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHH-HHhccCHHHHHHHHHHHHHHHHHcC--------
Confidence 75 88888 58899999999888764 1222 22255666652 3 1345677788888876665321
Q ss_pred CCccccccCcccccHHHHHHHHHhhC
Q 002337 886 DSSRIDQADSVVVEYDDFVKVLRELS 911 (934)
Q Consensus 886 ~~~~~~~~~~~~it~~df~~al~~~~ 911 (934)
...|+.+|+.+|+..+.
T Consensus 261 ---------~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 261 ---------EERVRREHVYSARAEIE 277 (387)
T ss_dssp ---------CSCBCHHHHHHHHHHHH
T ss_pred ---------CCCcCHHHHHHHHHHHh
Confidence 12477888888877653
No 81
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.53 E-value=1.7e-14 Score=163.54 Aligned_cols=214 Identities=20% Similarity=0.261 Sum_probs=132.9
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccc-ccccchh-hhhhHHHHHHHH----hCCCcEEEecccccc
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI-NMYIGES-EKNVRDIFQKAR----SARPCVIFFDELDSL 755 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~-~~~~Ges-e~~v~~lf~~A~----~~~p~vlfiDEid~l 755 (934)
.++.+++|+||||||||++|+++|+.++.+|+.+++..+. ..|.|+. +..+..+|..+. ...++||||||+|.+
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 149 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKI 149 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHH
Confidence 3467899999999999999999999999999999998876 4577765 445666666432 346789999999999
Q ss_pred ccCCCCCCCCch-hHHHHHHhhhhhccCCc----C--------------CCCCEEEEEEcCCC-----------------
Q 002337 756 APARGASGDSGG-VMDRVVSQMLAEIDGLN----D--------------SSQDLFIIGASNRP----------------- 799 (934)
Q Consensus 756 ~~~r~~~~~~~~-~~~~v~~~lL~~ldg~~----~--------------~~~~v~vI~aTNrp----------------- 799 (934)
..+|++...... ....+.+.|+..|++.. . ...++++|+|||..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~ 229 (376)
T 1um8_A 150 SRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF 229 (376)
T ss_dssp --------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSC
T ss_pred hhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCC
Confidence 887543211111 11247788888888531 0 11456778887721
Q ss_pred ------------------------CCCChhhhCCCCcceeeeecCCCCHHHHHHHHHH----HHhc-------CCCCcCC
Q 002337 800 ------------------------DLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKA----LTRK-------FKLLEDV 844 (934)
Q Consensus 800 ------------------------~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~----~~~~-------~~~~~~~ 844 (934)
..+.|+|+. ||+..+.++ |.+.++...|+.. +.++ ......+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~-~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (376)
T 1um8_A 230 TQEKMSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLD-SISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIF 306 (376)
T ss_dssp CCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECC-CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEE
T ss_pred CchhhhccchhHHHhhcCHHHHhhcCCChHHhc--CCCceeecc-CCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEE
Confidence 125577777 888888888 5888888888852 2211 1111111
Q ss_pred ---CHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHh
Q 002337 845 ---SLYSIAKKC-PPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRE 909 (934)
Q Consensus 845 ---~l~~la~~~-t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~ 909 (934)
-+..++... +..+..++|.+++..+...++.+.... ......|+.+++.++.+.
T Consensus 307 ~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~-----------~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 307 EEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKL-----------KGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp CHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGG-----------TTSEEEECHHHHTTSSCC
T ss_pred CHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCC-----------CCCEEEEeHHHhcCCCCc
Confidence 245566552 123677899999999888887654321 113356888888775544
No 82
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.53 E-value=1.7e-14 Score=158.58 Aligned_cols=182 Identities=19% Similarity=0.281 Sum_probs=127.2
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCcccccc-----ccchhhh----h-hHHHHHHHHhCCCcEEEec
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM-----YIGESEK----N-VRDIFQKARSARPCVIFFD 750 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~-----~~Gese~----~-v~~lf~~A~~~~p~vlfiD 750 (934)
...++|+||||||||++|+++|..+ +.+++.++++.+... ++|.... . ...+....+....+|||||
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lD 126 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFD 126 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEe
Confidence 4579999999999999999999987 557999998766432 2221110 0 1223334444556899999
Q ss_pred cccccccCCCCCCCCchhHHHHHHhhhhhccCCcC--------CCCCEEEEEEcCC------------------------
Q 002337 751 ELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND--------SSQDLFIIGASNR------------------------ 798 (934)
Q Consensus 751 Eid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~--------~~~~v~vI~aTNr------------------------ 798 (934)
|+|.+.+ .+.+.|+..|+.... .-.++++|+|||.
T Consensus 127 Ei~~l~~-------------~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~ 193 (311)
T 4fcw_A 127 AIEKAHP-------------DVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFK 193 (311)
T ss_dssp TGGGSCH-------------HHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHH
T ss_pred ChhhcCH-------------HHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHH
Confidence 9998842 355566665553221 1136889999998
Q ss_pred --CCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCC-------CCcCC---CHHHHHhhCCC--CCCHHHHHH
Q 002337 799 --PDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFK-------LLEDV---SLYSIAKKCPP--NFTGADMYA 864 (934)
Q Consensus 799 --p~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~-------~~~~~---~l~~la~~~t~--g~sgaDl~~ 864 (934)
...++|+|++ ||+..+.++ |++.+++..|++.++++.. ....+ .+..+++.. . .+++++|.+
T Consensus 194 ~~~~~~~~~l~~--R~~~~~~~~-p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~gn~R~L~~ 269 (311)
T 4fcw_A 194 VLQQHFRPEFLN--RLDEIVVFR-PLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERG-YDPVFGARPLRR 269 (311)
T ss_dssp HHHHHSCHHHHT--TCSEEEECC-CCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHS-CBTTTBTTTHHH
T ss_pred HHHHhCCHHHHh--cCCeEEEeC-CCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhC-CCccCCchhHHH
Confidence 4468899998 999999998 5889999999988776531 11112 255666652 3 577899999
Q ss_pred HHHHHHHHHHHHHhcccC
Q 002337 865 LCADAWFHAAKRKVLSSD 882 (934)
Q Consensus 865 l~~~A~~~A~~r~~~~~~ 882 (934)
+|+++...++.+.+...+
T Consensus 270 ~i~~~~~~~~~~~i~~~~ 287 (311)
T 4fcw_A 270 VIQRELETPLAQKILAGE 287 (311)
T ss_dssp HHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 999999988887776544
No 83
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.53 E-value=1.2e-13 Score=155.40 Aligned_cols=173 Identities=18% Similarity=0.235 Sum_probs=119.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC--cEEEEecCccccccc-----------------------------------
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGI--HVVEYSCHNLMASSE----------------------------------- 438 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~--~~~~I~~~~L~~~~~----------------------------------- 438 (934)
++.++||+||||||||++++++|++++. +++.++|..+...+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~ 148 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVIN 148 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhh
Confidence 3578999999999999999999999974 788888766433221
Q ss_pred --------------cchHHHHHHHHHHhhc---------CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHh
Q 002337 439 --------------RKTSAALAQAFNTAQS---------YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREF 495 (934)
Q Consensus 439 --------------g~~e~~L~~~f~~A~~---------~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~l 495 (934)
+.....++..+..+.. ..|+++||||+|.+.. +....|..+
T Consensus 149 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~----------------~~~~~L~~~ 212 (368)
T 3uk6_A 149 SRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI----------------ESFSFLNRA 212 (368)
T ss_dssp C----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH----------------HHHHHHHHH
T ss_pred cccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh----------------HHHHHHHHH
Confidence 1112344444444332 1268999999998754 334444454
Q ss_pred cCCCccccccccCCCCchhhhhhhhcccEEEEEec-----------CCCCCCChhhhcccceEEEcCCCCHHHHHHHHHH
Q 002337 496 TEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA-----------DSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQ 564 (934)
Q Consensus 496 l~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatT-----------n~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ 564 (934)
++.. ..+++++++. |.+..+++++++||.. +.+++|+.+++.+|++.
T Consensus 213 le~~---------------------~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i~~~~~~~~e~~~il~~ 270 (368)
T 3uk6_A 213 LESD---------------------MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-VSTTPYSEKDTKQILRI 270 (368)
T ss_dssp TTCT---------------------TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-EEECCCCHHHHHHHHHH
T ss_pred hhCc---------------------CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-EEecCCCHHHHHHHHHH
Confidence 4321 2234444443 3467899999999975 89999999999999998
Q ss_pred hccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 002337 565 LLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIR 610 (934)
Q Consensus 565 ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~ 610 (934)
.+..... .. .+..++.++..+.+..++++..+++.|...+..
T Consensus 271 ~~~~~~~---~~-~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~ 312 (368)
T 3uk6_A 271 RCEEEDV---EM-SEDAYTVLTRIGLETSLRYAIQLITAASLVCRK 312 (368)
T ss_dssp HHHHTTC---CB-CHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCC---CC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 8764322 22 245678888888867889999999998877654
No 84
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.51 E-value=9.8e-14 Score=164.60 Aligned_cols=189 Identities=21% Similarity=0.279 Sum_probs=115.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcccc---------ccccchHHHHHHHHHHhhcCCCEEEEEcchh
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA---------SSERKTSAALAQAFNTAQSYSPTILLLRDFD 466 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~---------~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID 466 (934)
.+..++|+|||||||||+++++|+.++.+++.++|..+.. .+.|.....+.+.|..+....| ++||||+|
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid 185 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEID 185 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhh
Confidence 4567999999999999999999999999999999986543 3345555667777887765555 99999999
Q ss_pred hccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccce
Q 002337 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSH 546 (934)
Q Consensus 467 ~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~ 546 (934)
.+.+... .+....|.++++........ ............+++|+|||.++.+++++++||.
T Consensus 186 ~l~~~~~------------~~~~~~LL~~ld~~~~~~~~------~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~- 246 (543)
T 3m6a_A 186 KMSSDFR------------GDPSSAMLEVLDPEQNSSFS------DHYIEETFDLSKVLFIATANNLATIPGPLRDRME- 246 (543)
T ss_dssp SCC---------------------CCGGGTCTTTTTBCC------CSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEE-
T ss_pred hhhhhhc------------cCHHHHHHHHHhhhhcceee------cccCCeeecccceEEEeccCccccCCHHHHhhcc-
Confidence 9876321 01122222333211000000 0000001112578999999999999999999995
Q ss_pred EEEcCCCCHHHHHHHHHHhcccc-----ccccCCC-CchHHHHHHHhhcCC-CChHHHHHHHHHH
Q 002337 547 EISMGPLTEQQRVEMLSQLLQPV-----SELTSDT-GSEEFVKDIIGQTSG-FMPRDLHALVADA 604 (934)
Q Consensus 547 eI~i~~Pde~~R~~IL~~ll~~~-----~~l~~d~-~~~~~L~~la~~t~G-fv~~DL~~L~~~A 604 (934)
.|.++.|+.+++.+|++.++... ....... -.+..+..++..+.+ ...+++.+.+..+
T Consensus 247 vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~ 311 (543)
T 3m6a_A 247 IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAI 311 (543)
T ss_dssp EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHH
T ss_pred eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHH
Confidence 79999999999999999876221 0000011 124556777776665 3345554444433
No 85
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.50 E-value=8.9e-14 Score=154.18 Aligned_cols=170 Identities=16% Similarity=0.241 Sum_probs=119.2
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCC
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR 759 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r 759 (934)
.+.+++|+||||||||++|+++++.+ +.+++++++.++...+.+.........|..... .+++|||||++.+..++
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~ 114 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE 114 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh
Confidence 35789999999999999999999988 899999999888776666554444344444332 47899999999986431
Q ss_pred CCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC---CCChhhhCCCCcc--eeeeecCCCCHHHHHHHHHHH
Q 002337 760 GASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD---LIDPALLRPGRFD--KLLYVGVNSDVSYRERVLKAL 834 (934)
Q Consensus 760 ~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~---~lD~allrpGRfd--~~i~v~~Pp~~~~r~~Il~~~ 834 (934)
.....++..++.... .+..+|+++++.|+ .++++|++ ||+ ..+.++ | +.+++..|++..
T Consensus 115 -----------~~~~~l~~~l~~~~~-~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~-~-~~~e~~~il~~~ 178 (324)
T 1l8q_A 115 -----------RTQIEFFHIFNTLYL-LEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIE-L-DNKTRFKIIKEK 178 (324)
T ss_dssp -----------HHHHHHHHHHHHHHH-TTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECC-C-CHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHH-CCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeC-C-CHHHHHHHHHHH
Confidence 111222222222111 23467777777776 68999999 997 456666 5 899999999998
Q ss_pred HhcCCCCc-CCCHHHHHhhCCCCCCHHHHHHHHHHHHHH
Q 002337 835 TRKFKLLE-DVSLYSIAKKCPPNFTGADMYALCADAWFH 872 (934)
Q Consensus 835 ~~~~~~~~-~~~l~~la~~~t~g~sgaDl~~l~~~A~~~ 872 (934)
++..++.- +..+..++.. + .+.+++.+++..+...
T Consensus 179 ~~~~~~~l~~~~l~~l~~~-~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 179 LKEFNLELRKEVIDYLLEN-T--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HHHTTCCCCHHHHHHHHHH-C--SSHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHh-C--CCHHHHHHHHHHHHHc
Confidence 87654322 2226777877 3 5678888888876654
No 86
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.48 E-value=2.7e-14 Score=143.92 Aligned_cols=134 Identities=26% Similarity=0.434 Sum_probs=100.0
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc----------CCcEEEecCcccc--ccccchhhhhhHHHHHHHH-hCCCcEEEec
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELI--NMYIGESEKNVRDIFQKAR-SARPCVIFFD 750 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~--~~~~Gese~~v~~lf~~A~-~~~p~vlfiD 750 (934)
+.+++|+||||||||++|+++++.+ +.+++.+++.++. ..+.|..+..++.+++.+. ...|+|||||
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iD 122 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 122 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 5789999999999999999999886 7889999988776 4567777788888888664 4568899999
Q ss_pred cccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC-----CCChhhhCCCCcceeeeecCCCCHH
Q 002337 751 ELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNSDVS 825 (934)
Q Consensus 751 Eid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~-----~lD~allrpGRfd~~i~v~~Pp~~~ 825 (934)
|+|.+.+.+..... .. ....+..++. ..++.+|++||.++ .+|+++++ ||+ .++++. |+.+
T Consensus 123 e~~~l~~~~~~~~~-~~-~~~~l~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~-p~~~ 188 (195)
T 1jbk_A 123 ELHTMVGAGKADGA-MD-AGNMLKPALA--------RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAE-PSVE 188 (195)
T ss_dssp TGGGGTT------C-CC-CHHHHHHHHH--------TTSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCC-CCHH
T ss_pred CHHHHhccCcccch-HH-HHHHHHHhhc--------cCCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCC-CCHH
Confidence 99999866532211 11 2233334432 23577888999886 78999999 998 589995 7888
Q ss_pred HHHHHH
Q 002337 826 YRERVL 831 (934)
Q Consensus 826 ~r~~Il 831 (934)
++.+|+
T Consensus 189 ~~~~il 194 (195)
T 1jbk_A 189 DTIAIL 194 (195)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 887765
No 87
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.47 E-value=1.6e-13 Score=158.67 Aligned_cols=194 Identities=23% Similarity=0.313 Sum_probs=128.0
Q ss_pred CcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHh----CCCcEEEeccccccccCCC
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARS----ARPCVIFFDELDSLAPARG 760 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~----~~p~vlfiDEid~l~~~r~ 760 (934)
.+++|+||||||||++|+++++.++.+|+.+++... ..+.++.+|..+.. ..++||||||+|.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-- 121 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-- 121 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--
Confidence 579999999999999999999999999999986432 23456777776653 46889999999998532
Q ss_pred CCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEc--CCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcC
Q 002337 761 ASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGAS--NRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKF 838 (934)
Q Consensus 761 ~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aT--Nrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~ 838 (934)
..+.||..|+. ..+++|++| |....++++|++ |+. .+.++ |++.++...|++..+++.
T Consensus 122 -----------~q~~LL~~le~-----~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~-~l~~edi~~il~~~l~~~ 181 (447)
T 3pvs_A 122 -----------QQDAFLPHIED-----GTITFIGATTENPSFELNSALLS--RAR-VYLLK-SLSTEDIEQVLTQAMEDK 181 (447)
T ss_dssp --------------CCHHHHHT-----TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECC-CCCHHHHHHHHHHHHHCT
T ss_pred -----------HHHHHHHHHhc-----CceEEEecCCCCcccccCHHHhC--cee-EEeeC-CcCHHHHHHHHHHHHHHH
Confidence 23445555553 346677666 444589999999 987 56677 478888999998888763
Q ss_pred C-------C-CcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhh
Q 002337 839 K-------L-LEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLREL 910 (934)
Q Consensus 839 ~-------~-~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~ 910 (934)
. + ..+..+..+++.+ +-+.+++.+++..|+..+.. . ......||.+|+.+++...
T Consensus 182 ~~~~~~~~~~i~~~al~~L~~~~--~Gd~R~lln~Le~a~~~a~~------~---------~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 182 TRGYGGQDIVLPDETRRAIAELV--NGDARRALNTLEMMADMAEV------D---------DSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp TTSSTTSSEECCHHHHHHHHHHH--CSCHHHHHHHHHHHHHHSCB------C---------TTSCEECCHHHHHHHHTCC
T ss_pred hhhhccccCcCCHHHHHHHHHHC--CCCHHHHHHHHHHHHHhccc------c---------cCCCCccCHHHHHHHHhhh
Confidence 2 1 1112256677663 33556777777766543310 0 0122468889999888876
Q ss_pred CCCcCHHHHHHHHH
Q 002337 911 SPSLSMAELKKYEL 924 (934)
Q Consensus 911 ~psvs~~~l~~y~~ 924 (934)
.+......-.+|..
T Consensus 245 ~~~~dk~gd~~yd~ 258 (447)
T 3pvs_A 245 SARFDNKGDRFYDL 258 (447)
T ss_dssp CCC---CCHHHHHH
T ss_pred hhccCCccchHHHH
Confidence 65544433334443
No 88
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.47 E-value=1.4e-13 Score=160.56 Aligned_cols=163 Identities=23% Similarity=0.361 Sum_probs=112.5
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHc----------CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEecc
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDE 751 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDE 751 (934)
....++||+||||||||++|+++|..+ +.+|+.+++. ..|.|+.+..++.+|+.++...|+|||||
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD- 274 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID- 274 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-
Confidence 446789999999999999999999986 7889999887 78899999999999999999899999999
Q ss_pred ccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC-----CCChhhhCCCCcceeeeecCCCCHHH
Q 002337 752 LDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNSDVSY 826 (934)
Q Consensus 752 id~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~-----~lD~allrpGRfd~~i~v~~Pp~~~~ 826 (934)
+ . ....+.|+..|+ ...+.+|+|||.++ .+|++++| ||.. |.|+. |+.++
T Consensus 275 --------~-~-------~~a~~~L~~~L~-----~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~-p~~e~ 329 (468)
T 3pxg_A 275 --------A-A-------IDASNILKPSLA-----RGELQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQ-PSVDE 329 (468)
T ss_dssp --------C----------------CCCTT-----SSSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCC-CCHHH
T ss_pred --------C-c-------hhHHHHHHHhhc-----CCCEEEEecCCHHHHHHHhhcCHHHHH--hCcc-ceeCC-CCHHH
Confidence 1 0 013344444443 34789999999998 69999999 9984 99996 78999
Q ss_pred HHHHHHHHHhcCCCCcCCC-----HHHHHhhC----CCCCCHHHHHHHHHHHHHHH
Q 002337 827 RERVLKALTRKFKLLEDVS-----LYSIAKKC----PPNFTGADMYALCADAWFHA 873 (934)
Q Consensus 827 r~~Il~~~~~~~~~~~~~~-----l~~la~~~----t~g~sgaDl~~l~~~A~~~A 873 (934)
+..|++.+..++....++. +..++... +..+...+...++.+|+..+
T Consensus 330 ~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~ 385 (468)
T 3pxg_A 330 SIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKV 385 (468)
T ss_dssp HHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHH
Confidence 9999998887753222222 34444431 23344457778887776544
No 89
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.46 E-value=1.5e-13 Score=150.41 Aligned_cols=198 Identities=14% Similarity=0.190 Sum_probs=123.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcccc-ccccc-hHHHHHHHHHHhh-----cCCCEEEEEcchhh
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA-SSERK-TSAALAQAFNTAQ-----SYSPTILLLRDFDV 467 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~-~~~g~-~e~~L~~~f~~A~-----~~~P~IL~IDEID~ 467 (934)
..+.++||+||||||||++++++|+.++.+++.++|.++.. .+.+. ....++.++..+. ...++++||||+|.
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 127 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK 127 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhh
Confidence 34578999999999999999999999999999999998765 33332 2345666555331 12368999999999
Q ss_pred ccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEe----cCCCCCCChhhhcc
Q 002337 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAA----ADSSEGLPPTIRRC 543 (934)
Q Consensus 468 L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIat----Tn~~~~Ld~aLrrr 543 (934)
+.+.....+ .+ .....+...|..+++... .....+.....++++|++ ++.+..+++++++|
T Consensus 128 l~~~~~~~~--~~--~~~~~~~~~Ll~~le~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R 192 (310)
T 1ofh_A 128 ICKKGEYSG--AD--VSREGVQRDLLPLVEGST-----------VSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGR 192 (310)
T ss_dssp GSCCSSCCS--SH--HHHHHHHHHHHHHHHCCE-----------EEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHT
T ss_pred cCccccccc--cc--hhHHHHHHHHHHHhcCCe-----------EecccccccCCcEEEEEcCCcccCCcccCCHHHHhh
Confidence 876321111 00 111122333333333110 000000112456788888 45677899999999
Q ss_pred cceEEEcCCCCHHHHHHHHHHhcccc----------ccccCCCCchHHHHHHHhhc-------CCCChHHHHHHHHHHHH
Q 002337 544 FSHEISMGPLTEQQRVEMLSQLLQPV----------SELTSDTGSEEFVKDIIGQT-------SGFMPRDLHALVADAGA 606 (934)
Q Consensus 544 F~~eI~i~~Pde~~R~~IL~~ll~~~----------~~l~~d~~~~~~L~~la~~t-------~Gfv~~DL~~L~~~A~~ 606 (934)
|+..+.+++|+.+++.+|++...... ....... .+..++.++..+ ++...+.+..+++.+..
T Consensus 193 ~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~ 271 (310)
T 1ofh_A 193 LPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAF-TTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 271 (310)
T ss_dssp CCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEE-CHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSH
T ss_pred CCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeecc-CHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHH
Confidence 99889999999999999998422100 0000011 234455555554 24667777777776654
Q ss_pred HH
Q 002337 607 NL 608 (934)
Q Consensus 607 ~a 608 (934)
.+
T Consensus 272 ~~ 273 (310)
T 1ofh_A 272 KI 273 (310)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 90
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.45 E-value=9.8e-14 Score=122.57 Aligned_cols=82 Identities=23% Similarity=0.409 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHH
Q 002337 823 DVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDD 902 (934)
Q Consensus 823 ~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~d 902 (934)
|.++|.+||+.+++++++..++|+..+|+. |+|||||||.++|++|++.|+++. ...|+++|
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~-t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~~d 63 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVAR-PDKISGADINSICQESGMLAVREN-----------------RYIVLAKD 63 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTS-SCCCCHHHHHHHHHHHHHGGGTSC-----------------CSSBCHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHH
Confidence 678999999999999999899999999999 699999999999999999998652 24699999
Q ss_pred HHHHHHhhCCCcCHHHHHHHH
Q 002337 903 FVKVLRELSPSLSMAELKKYE 923 (934)
Q Consensus 903 f~~al~~~~psvs~~~l~~y~ 923 (934)
|++|+++++||++ +++++|+
T Consensus 64 f~~Al~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 64 FEKAYKTVIKKDE-QEHEFYK 83 (83)
T ss_dssp HHHHHHHHCC-----------
T ss_pred HHHHHHHHccCch-HHHHhcC
Confidence 9999999999999 8888885
No 91
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.45 E-value=2.3e-13 Score=168.10 Aligned_cols=163 Identities=24% Similarity=0.352 Sum_probs=115.7
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHc----------CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEecc
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDE 751 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDE 751 (934)
....++||+||||||||++|+++|..+ +..++.+++ ..+|.|+.+..++.+|+.+....|+|||||
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD- 274 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID- 274 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-
Confidence 456789999999999999999999996 788888887 567899999999999999999999999999
Q ss_pred ccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC-----CCChhhhCCCCcceeeeecCCCCHHH
Q 002337 752 LDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNSDVSY 826 (934)
Q Consensus 752 id~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~-----~lD~allrpGRfd~~i~v~~Pp~~~~ 826 (934)
+. ....+.|+..|+ ...+.+|+|||..+ .+|++++| ||. .|+|+. |+.++
T Consensus 275 --------~~--------~~~~~~L~~~l~-----~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~-p~~~~ 329 (758)
T 3pxi_A 275 --------AA--------IDASNILKPSLA-----RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQ-PSVDE 329 (758)
T ss_dssp --------C----------------CCCTT-----SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCC-CCHHH
T ss_pred --------Cc--------hhHHHHHHHHHh-----cCCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCC-CCHHH
Confidence 10 113345555544 35689999999998 79999999 994 699996 78999
Q ss_pred HHHHHHHHHhcCCCCcCCC-----HHHHHhh----CCCCCCHHHHHHHHHHHHHHH
Q 002337 827 RERVLKALTRKFKLLEDVS-----LYSIAKK----CPPNFTGADMYALCADAWFHA 873 (934)
Q Consensus 827 r~~Il~~~~~~~~~~~~~~-----l~~la~~----~t~g~sgaDl~~l~~~A~~~A 873 (934)
+.+||+.+..++....+++ +..++.. .+++|.+.+...++.+|+..+
T Consensus 330 ~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~ 385 (758)
T 3pxi_A 330 SIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKV 385 (758)
T ss_dssp HHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHH
Confidence 9999998887754333333 2333322 246777788888888776544
No 92
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=6.4e-13 Score=150.11 Aligned_cols=187 Identities=21% Similarity=0.249 Sum_probs=127.4
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc-----------CCcEEEecCcccc-cc-----------------ccchhh-hhhH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC-----------SLNFLSVKGPELI-NM-----------------YIGESE-KNVR 733 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~-----------~~~~i~v~~~~l~-~~-----------------~~Gese-~~v~ 733 (934)
+..++|+||||||||++|+++++++ +.+++.+++.+.. +. +.|.+. ..+.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 124 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYID 124 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Confidence 5689999999999999999999987 8899999976543 11 112222 2244
Q ss_pred HHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHH-HHhhhhhccCCcCCCCCEEEEEEcCCC---CCCChhhhCC
Q 002337 734 DIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRV-VSQMLAEIDGLNDSSQDLFIIGASNRP---DLIDPALLRP 809 (934)
Q Consensus 734 ~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v-~~~lL~~ldg~~~~~~~v~vI~aTNrp---~~lD~allrp 809 (934)
.+++.++...+ ||||||+|.+...+. ..+ +..|+... .++.+|++||.+ +.+++++++
T Consensus 125 ~l~~~l~~~~~-vlilDEi~~l~~~~~---------~~~~l~~l~~~~-------~~~~iI~~t~~~~~~~~l~~~l~s- 186 (384)
T 2qby_B 125 KIKNGTRNIRA-IIYLDEVDTLVKRRG---------GDIVLYQLLRSD-------ANISVIMISNDINVRDYMEPRVLS- 186 (384)
T ss_dssp HHHHHHSSSCE-EEEEETTHHHHHSTT---------SHHHHHHHHTSS-------SCEEEEEECSSTTTTTTSCHHHHH-
T ss_pred HHHHHhccCCC-EEEEECHHHhccCCC---------CceeHHHHhcCC-------cceEEEEEECCCchHhhhCHHHHh-
Confidence 55555544444 999999999975421 124 56665543 568999999988 678999998
Q ss_pred CCcceeeeecCCCCHHHHHHHHHHHHhc-C---CCCcCCCHHHHHhhCCCCC--CHHHHHHHHHHHHHHHHHHHhcccCC
Q 002337 810 GRFDKLLYVGVNSDVSYRERVLKALTRK-F---KLLEDVSLYSIAKKCPPNF--TGADMYALCADAWFHAAKRKVLSSDS 883 (934)
Q Consensus 810 GRfd~~i~v~~Pp~~~~r~~Il~~~~~~-~---~~~~~~~l~~la~~~t~g~--sgaDl~~l~~~A~~~A~~r~~~~~~~ 883 (934)
||...+.++ |++.++..+|++..++. + .+. +..+..+++.+ .++ +...+.++|+.|+..|.
T Consensus 187 -r~~~~i~l~-~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~~~-~~~~G~~r~a~~~l~~a~~~a~--------- 253 (384)
T 2qby_B 187 -SLGPSVIFK-PYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAAIS-AKEHGDARKAVNLLFRAAQLAS--------- 253 (384)
T ss_dssp -TCCCEEEEC-CCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHTT---------
T ss_pred -cCCCeEEEC-CCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHhc---------
Confidence 998899999 58999999999988763 2 222 22355666663 322 23455567777655442
Q ss_pred CCCCccccccCcccccHHHHHHHHHhhC
Q 002337 884 NSDSSRIDQADSVVVEYDDFVKVLRELS 911 (934)
Q Consensus 884 ~~~~~~~~~~~~~~it~~df~~al~~~~ 911 (934)
....|+.+|+.+|+.++.
T Consensus 254 ----------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 254 ----------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp ----------SSSCCCHHHHHHHHHHHH
T ss_pred ----------CCCccCHHHHHHHHHHHh
Confidence 112477788887777654
No 93
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.45 E-value=4.7e-13 Score=149.35 Aligned_cols=194 Identities=24% Similarity=0.319 Sum_probs=115.2
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEE----ecCccc---------------------cccccchhhhh------h
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLS----VKGPEL---------------------INMYIGESEKN------V 732 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~----v~~~~l---------------------~~~~~Gese~~------v 732 (934)
..++||+||||||||++|+++++.++..... +++... +....|.++.. +
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 124 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDI 124 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECH
T ss_pred CceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechh
Confidence 3579999999999999999999987631100 111110 00001111111 1
Q ss_pred HHHHHHH---------HhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccC----Cc------CCCCCEEEE
Q 002337 733 RDIFQKA---------RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDG----LN------DSSQDLFII 793 (934)
Q Consensus 733 ~~lf~~A---------~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg----~~------~~~~~v~vI 793 (934)
...|..+ ....++||||||+|.+.+ ...+.|+..|+. +. ....++++|
T Consensus 125 ~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~-------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li 191 (350)
T 1g8p_A 125 ERAISKGEKAFEPGLLARANRGYLYIDECNLLED-------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLV 191 (350)
T ss_dssp HHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH-------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEE
T ss_pred hhhhcCCceeecCceeeecCCCEEEEeChhhCCH-------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEE
Confidence 1122211 112367999999999853 233344443331 00 011379999
Q ss_pred EEcCCCC-CCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHh-------------------------------cCCCC
Q 002337 794 GASNRPD-LIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTR-------------------------------KFKLL 841 (934)
Q Consensus 794 ~aTNrp~-~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~-------------------------------~~~~~ 841 (934)
+|||..+ .++++|++ ||+..+.++.|++.+.+.+|++..++ ...+.
T Consensus 192 ~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls 269 (350)
T 1g8p_A 192 GSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAP 269 (350)
T ss_dssp EEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC
T ss_pred EEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCC
Confidence 9999755 89999999 99999999976688888888866321 11222
Q ss_pred cCCCHHHHHhhC-CCCC-CHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhh
Q 002337 842 EDVSLYSIAKKC-PPNF-TGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLREL 910 (934)
Q Consensus 842 ~~~~l~~la~~~-t~g~-sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~ 910 (934)
++ .+..++..+ ..+. +.+.+.++++.|...|..+. ...|+.+|+.+|+..+
T Consensus 270 ~~-~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~-----------------~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 270 NT-ALYDCAALCIALGSDGLRGELTLLRSARALAALEG-----------------ATAVGRDHLKRVATMA 322 (350)
T ss_dssp HH-HHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT-----------------CSBCCHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC-----------------CCcCCHHHHHHHHHHH
Confidence 21 133344332 0122 56888888888776665321 1258999999999865
No 94
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.44 E-value=3.7e-13 Score=141.26 Aligned_cols=181 Identities=12% Similarity=0.093 Sum_probs=121.5
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcC---CcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCC
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECS---LNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR 759 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~---~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r 759 (934)
.+.+++|+||||||||++|++++.++. .+++.+++.++...+.. .++. ...+.+|||||+|.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~vliiDe~~~~~~~~ 120 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA--------LLEG--LEQFDLICIDDVDAVAGHP 120 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG--------GGTT--GGGSSEEEEETGGGGTTCH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--------HHHh--ccCCCEEEEeccccccCCH
Confidence 357899999999999999999998764 77888888776544321 1111 1457899999999985321
Q ss_pred CCCCCCchhHHHHHHhhhhhccCCcCCCCCE-EEEEEcCCCC---CCChhhhCCCCcc--eeeeecCCCCHHHHHHHHHH
Q 002337 760 GASGDSGGVMDRVVSQMLAEIDGLNDSSQDL-FIIGASNRPD---LIDPALLRPGRFD--KLLYVGVNSDVSYRERVLKA 833 (934)
Q Consensus 760 ~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v-~vI~aTNrp~---~lD~allrpGRfd--~~i~v~~Pp~~~~r~~Il~~ 833 (934)
.....|+..++..... ..+ +|+++++.++ .+++++.+ ||. ..+.++. |+.+++.++++.
T Consensus 121 -----------~~~~~l~~~l~~~~~~-~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~-~~~~~~~~~l~~ 185 (242)
T 3bos_A 121 -----------LWEEAIFDLYNRVAEQ-KRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQP-MMDDEKLAALQR 185 (242)
T ss_dssp -----------HHHHHHHHHHHHHHHH-CSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCC-CCGGGHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHc-CCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCC-CCHHHHHHHHHH
Confidence 1112222222222111 233 5555555554 56689998 886 8899994 788999999998
Q ss_pred HHhcCCCCc-CCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHH
Q 002337 834 LTRKFKLLE-DVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLR 908 (934)
Q Consensus 834 ~~~~~~~~~-~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~ 908 (934)
+++.....- +..+..+++.+ +-+.+++.+++..|...|..+. ..|+.+|++++++
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~~--~g~~r~l~~~l~~~~~~a~~~~------------------~~It~~~v~~~l~ 241 (242)
T 3bos_A 186 RAAMRGLQLPEDVGRFLLNRM--ARDLRTLFDVLDRLDKASMVHQ------------------RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHTTCCCCHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHHHT------------------CCCCHHHHHHHHT
T ss_pred HHHHcCCCCCHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHhC------------------CCCcHHHHHHHhh
Confidence 887654322 22356777774 4477899999988877764321 2489999998875
No 95
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.44 E-value=5.2e-13 Score=155.69 Aligned_cols=165 Identities=15% Similarity=0.283 Sum_probs=114.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchh
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFD 466 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el----------g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID 466 (934)
..++||+||||||||++++++|..+ +..++.+++. +.+.|+.+..++.+|..+....|+|+|||
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD--- 274 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID--- 274 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC---
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe---
Confidence 3469999999999999999999997 7788988887 55567777788999999988889999999
Q ss_pred hccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-----CCChhhh
Q 002337 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPTIR 541 (934)
Q Consensus 467 ~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~-----~Ld~aLr 541 (934)
.. ......|...++ .+.+.+|++||..+ .++++++
T Consensus 275 --~~---------------~~a~~~L~~~L~-----------------------~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 275 --AA---------------IDASNILKPSLA-----------------------RGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp --C-----------------------CCCTT-----------------------SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred --Cc---------------hhHHHHHHHhhc-----------------------CCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 11 011222222211 55789999999987 6899999
Q ss_pred cccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC-----CChHHHHHHHHHHHHHH
Q 002337 542 RCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG-----FMPRDLHALVADAGANL 608 (934)
Q Consensus 542 rrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G-----fv~~DL~~L~~~A~~~a 608 (934)
+||. .+.++.|+.+++.+|++.++......+.-.-.+..+..++..+++ +.+.+...++.+|+..+
T Consensus 315 ~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~ 385 (468)
T 3pxg_A 315 RRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKV 385 (468)
T ss_dssp HSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHH
T ss_pred HhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHH
Confidence 9997 699999999999999998876543222112234556666665554 44567888888776554
No 96
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.44 E-value=6.4e-12 Score=140.09 Aligned_cols=208 Identities=25% Similarity=0.336 Sum_probs=141.2
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCC
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASG 763 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~ 763 (934)
+.+++|+||||+|||++++++|++++.++...+++.+.. ...+..++.. ...++|+|+||++.+.+.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~~--~~~~~v~~iDE~~~l~~~----- 117 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTS--LERGDVLFIDEIHRLNKA----- 117 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHH--CCTTCEEEEETGGGCCHH-----
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHHH--ccCCCEEEEcchhhcCHH-----
Confidence 478999999999999999999999999888777755421 1223334332 235679999999988631
Q ss_pred CCchhHHHHHHhhhhhc--c-----CCc-----CCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHH
Q 002337 764 DSGGVMDRVVSQMLAEI--D-----GLN-----DSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVL 831 (934)
Q Consensus 764 ~~~~~~~~v~~~lL~~l--d-----g~~-----~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il 831 (934)
+ ...+...+... + +-. ..-..+.++++|+++..|++++++ ||...+.++ |++.++..+|+
T Consensus 118 ----~-~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld-~~~~~~l~~iL 189 (334)
T 1in4_A 118 ----V-EELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELD-FYTVKELKEII 189 (334)
T ss_dssp ----H-HHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECC-CCCHHHHHHHH
T ss_pred ----H-HHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCC-CCCHHHHHHHH
Confidence 1 12222222111 0 000 001246778899999999999999 998888888 48999999999
Q ss_pred HHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhh
Q 002337 832 KALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLREL 910 (934)
Q Consensus 832 ~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~ 910 (934)
+...+.....-+ ..+..+|+++ .| +.+++.++++.+...|..+. ...||.+++.+|+..+
T Consensus 190 ~~~~~~~~~~~~~~~~~~ia~~~-~G-~~R~a~~ll~~~~~~a~~~~-----------------~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 190 KRAASLMDVEIEDAAAEMIAKRS-RG-TPRIAIRLTKRVRDMLTVVK-----------------ADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHTTCCBCHHHHHHHHHTS-TT-CHHHHHHHHHHHHHHHHHHT-----------------CSSBCHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHHhc-CC-ChHHHHHHHHHHHHHHHHcC-----------------CCCcCHHHHHHHHHHh
Confidence 988776544322 2266778773 55 55788899988876665331 1258888999998877
Q ss_pred CC---CcCHHHHHHHHHHHHHhcc
Q 002337 911 SP---SLSMAELKKYELLRDQFEG 931 (934)
Q Consensus 911 ~p---svs~~~l~~y~~~~~~~~~ 931 (934)
.. ..+..+..-++.+.+.|.+
T Consensus 251 ~~~~~~l~~~~~~~l~~~~~~~~~ 274 (334)
T 1in4_A 251 NIDDEGLDEFDRKILKTIIEIYRG 274 (334)
T ss_dssp TCCTTCCCHHHHHHHHHHHHHSTT
T ss_pred CCCcCCCCHHHHHHHHHHHHHhCC
Confidence 53 3455666666777777654
No 97
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.44 E-value=1.5e-13 Score=171.74 Aligned_cols=178 Identities=25% Similarity=0.392 Sum_probs=116.1
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHc----------CCcEEEecCcccc--ccccchhhhhhHHHHHHHHhC-CCcEEE
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELI--NMYIGESEKNVRDIFQKARSA-RPCVIF 748 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~--~~~~Gese~~v~~lf~~A~~~-~p~vlf 748 (934)
....+++|+||||||||++|+++|..+ +.+++.++++.+. ..|.|+.+..++.+|+.++.. .|+|||
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 268 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILF 268 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEE
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEE
Confidence 345689999999999999999999987 8899999999887 578999999999999999875 789999
Q ss_pred eccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC----CCChhhhCCCCcceeeeecCCCCH
Q 002337 749 FDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD----LIDPALLRPGRFDKLLYVGVNSDV 824 (934)
Q Consensus 749 iDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~----~lD~allrpGRfd~~i~v~~Pp~~ 824 (934)
|||+|.+.+.+...+. .. ...++..++ + ...+.+|++||.++ .+|++++| ||+. |+++. |+.
T Consensus 269 IDEi~~l~~~~~~~g~-~~-~~~~L~~~l---~-----~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~-p~~ 334 (854)
T 1qvr_A 269 IDELHTVVGAGKAEGA-VD-AGNMLKPAL---A-----RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDE-PTV 334 (854)
T ss_dssp ECCC---------------------HHHH---H-----TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECC-CCH
T ss_pred EecHHHHhccCCccch-HH-HHHHHHHHH---h-----CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCC-CCH
Confidence 9999999876543211 11 112333333 2 24577999999875 58999999 9996 99995 789
Q ss_pred HHHHHHHHHHHhcCCCCcCC-----CHHHHHhh----CCCCCCHHHHHHHHHHHHHHH
Q 002337 825 SYRERVLKALTRKFKLLEDV-----SLYSIAKK----CPPNFTGADMYALCADAWFHA 873 (934)
Q Consensus 825 ~~r~~Il~~~~~~~~~~~~~-----~l~~la~~----~t~g~sgaDl~~l~~~A~~~A 873 (934)
+++.+||+.+.+++....++ .+..+++. .+..|.......++.+|+..+
T Consensus 335 ~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~ 392 (854)
T 1qvr_A 335 EETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARL 392 (854)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHH
Confidence 99999998887754221121 13333332 245677778888887776544
No 98
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.43 E-value=1.7e-12 Score=144.52 Aligned_cols=204 Identities=15% Similarity=0.175 Sum_probs=128.9
Q ss_pred CcCCchHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHH
Q 002337 368 FVPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQ 447 (934)
Q Consensus 368 ~~~~~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~ 447 (934)
+.+.. +..+.+...+.....+ .....+|||+||||||||++|+++|++++.+++.++|..+. ....+..
T Consensus 31 iiG~~-~~~~~l~~~l~~~~~~----~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~ 99 (338)
T 3pfi_A 31 YIGQE-SIKKNLNVFIAAAKKR----NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAA 99 (338)
T ss_dssp CCSCH-HHHHHHHHHHHHHHHT----TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHH
T ss_pred hCChH-HHHHHHHHHHHHHHhc----CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHH
Confidence 34443 4455555555433211 12345699999999999999999999999999999997543 2333444
Q ss_pred HHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEE
Q 002337 448 AFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLV 527 (934)
Q Consensus 448 ~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVI 527 (934)
.+.. ...++++||||++.+.+ .....|...++.... ....+.............++++|
T Consensus 100 ~~~~--~~~~~vl~lDEi~~l~~----------------~~~~~Ll~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 100 ILTN--LSEGDILFIDEIHRLSP----------------AIEEVLYPAMEDYRL---DIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp HHHT--CCTTCEEEEETGGGCCH----------------HHHHHHHHHHHTSCC------------CCCCCCCCCCCEEE
T ss_pred HHHh--ccCCCEEEEechhhcCH----------------HHHHHHHHHHHhccc---hhhcccCccccceecCCCCeEEE
Confidence 4443 24689999999998754 222233333321100 00000000000000112258999
Q ss_pred EecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 002337 528 AAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGAN 607 (934)
Q Consensus 528 atTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ 607 (934)
++||....+++++++||+..+.+++|+.+++..+++..+..... .. ....++.++..+.| .++.+..+++.+...
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~---~~-~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~ 233 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK---TC-EEKAALEIAKRSRS-TPRIALRLLKRVRDF 233 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---EE-CHHHHHHHHHTTTT-CHHHHHHHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC---CC-CHHHHHHHHHHHCc-CHHHHHHHHHHHHHH
Confidence 99999999999999999889999999999999999988764322 11 24556777776655 456777777666443
Q ss_pred H
Q 002337 608 L 608 (934)
Q Consensus 608 a 608 (934)
+
T Consensus 234 a 234 (338)
T 3pfi_A 234 A 234 (338)
T ss_dssp H
T ss_pred H
Confidence 3
No 99
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.43 E-value=2.1e-13 Score=137.34 Aligned_cols=134 Identities=18% Similarity=0.301 Sum_probs=97.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEecCcccc--ccccchHHHHHHHHHHhh-cCCCEEEEEc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMA--SSERKTSAALAQAFNTAQ-SYSPTILLLR 463 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el----------g~~~~~I~~~~L~~--~~~g~~e~~L~~~f~~A~-~~~P~IL~ID 463 (934)
+.+++|+||+|||||++++++++.+ +.+++.+++.++.. ...+.....++.++..+. ...+.+++||
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iD 122 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 122 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 4579999999999999999999997 78889999887653 334555667777777553 3568899999
Q ss_pred chhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-----CCCh
Q 002337 464 DFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPP 538 (934)
Q Consensus 464 EID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~-----~Ld~ 538 (934)
|+|.+....... . ...+...+..+++ ..++.+|++||.+. .+++
T Consensus 123 e~~~l~~~~~~~----~----~~~~~~~l~~~~~-----------------------~~~~~~i~~~~~~~~~~~~~~~~ 171 (195)
T 1jbk_A 123 ELHTMVGAGKAD----G----AMDAGNMLKPALA-----------------------RGELHCVGATTLDEYRQYIEKDA 171 (195)
T ss_dssp TGGGGTT--------------CCCCHHHHHHHHH-----------------------TTSCCEEEEECHHHHHHHTTTCH
T ss_pred CHHHHhccCccc----c----hHHHHHHHHHhhc-----------------------cCCeEEEEeCCHHHHHHHHhcCH
Confidence 999987532110 0 0112333333321 34677888888775 7899
Q ss_pred hhhcccceEEEcCCCCHHHHHHHH
Q 002337 539 TIRRCFSHEISMGPLTEQQRVEML 562 (934)
Q Consensus 539 aLrrrF~~eI~i~~Pde~~R~~IL 562 (934)
++++||. .+.+++|+.++|.+|+
T Consensus 172 ~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 172 ALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHTTEE-EEECCCCCHHHHHTTC
T ss_pred HHHHHhc-eeecCCCCHHHHHHHh
Confidence 9999998 7999999999998875
No 100
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.42 E-value=5.1e-13 Score=150.63 Aligned_cols=212 Identities=16% Similarity=0.211 Sum_probs=128.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccc-cccch-HHHHHHHHHHh----hcCCCEEEEEcchhhcc
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMAS-SERKT-SAALAQAFNTA----QSYSPTILLLRDFDVFR 469 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~-~~g~~-e~~L~~~f~~A----~~~~P~IL~IDEID~L~ 469 (934)
++.++||+||||||||++|+++|+.++.+++.++|.++... +.|.. ...+..+|..+ ....+++|||||+|.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 56789999999999999999999999999999999987753 45554 45667777665 33457999999999998
Q ss_pred ccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCch-hhhhhhhcccEEEEEecCCC----------CC---
Q 002337 470 NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPV-KEIEKICRQQVLLVAAADSS----------EG--- 535 (934)
Q Consensus 470 ~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~-~~~~~~~~~~ViVIatTn~~----------~~--- 535 (934)
+.++..+...+ .....+...|.++++... ......++.... .....+...++++|++++.. ..
T Consensus 130 ~~~~~~~~~~~--~~~~~~~~~Ll~~leg~~-~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~ 206 (363)
T 3hws_A 130 RKSDNPSITRD--VSGEGVQQALLKLIEGTV-AAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSG 206 (363)
T ss_dssp CCSSCC---CH--HHHHHHHHHHHHHHHCC-----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC-
T ss_pred ccccccccccc--cchHHHHHHHHHHhcCce-eeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhcccc
Confidence 74422211111 111224454545543110 000000000000 00011223445566665532 11
Q ss_pred --------------------------------CChhhhcccceEEEcCCCCHHHHHHHHHH----hcccccc------cc
Q 002337 536 --------------------------------LPPTIRRCFSHEISMGPLTEQQRVEMLSQ----LLQPVSE------LT 573 (934)
Q Consensus 536 --------------------------------Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~----ll~~~~~------l~ 573 (934)
+.|++.+||+..+.+.+|+.+++.+|+.. +++.... ..
T Consensus 207 ~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~ 286 (363)
T 3hws_A 207 IGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVD 286 (363)
T ss_dssp -----------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCE
T ss_pred CCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCce
Confidence 78999999999999999999999999986 2221110 00
Q ss_pred CCCCchHHHHHHHhh--cCCCChHHHHHHHHHHHHHHHHh
Q 002337 574 SDTGSEEFVKDIIGQ--TSGFMPRDLHALVADAGANLIRK 611 (934)
Q Consensus 574 ~d~~~~~~L~~la~~--t~Gfv~~DL~~L~~~A~~~ai~r 611 (934)
... .+..++.++.. ...+..+.|.++++.+...++.+
T Consensus 287 l~~-~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 287 LEF-RDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp EEE-CHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred EEE-CHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 011 24456666653 23466789999998887776654
No 101
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.42 E-value=3.7e-13 Score=120.17 Aligned_cols=86 Identities=19% Similarity=0.337 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHH
Q 002337 823 DVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDD 902 (934)
Q Consensus 823 ~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~d 902 (934)
|.++|.+||+.++++.++..++|+..||+. |+|||||||.++|++|++.|+++.. ..|+++|
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~-t~G~SGADl~~l~~eAa~~a~r~~~-----------------~~i~~~d 63 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRL-CPNSTGAELRSVCTEAGMFAIRARR-----------------KVATEKD 63 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHT-CSSCCHHHHHHHHHHHHHHHHHHSC-----------------SSBCHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHH-cCCCcHHHHHHHHHHHHHHHHHhcc-----------------ccCCHHH
Confidence 457899999999999999999999999999 6999999999999999999998731 2599999
Q ss_pred HHHHHHhhCCCcCHH-HHHHHHHHH
Q 002337 903 FVKVLRELSPSLSMA-ELKKYELLR 926 (934)
Q Consensus 903 f~~al~~~~psvs~~-~l~~y~~~~ 926 (934)
|++|++++.+++... ....|..|.
T Consensus 64 f~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 64 FLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HHHHHHHHTC---------------
T ss_pred HHHHHHHHhcCcccccchhHHhccC
Confidence 999999999998654 477888773
No 102
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.41 E-value=1.7e-12 Score=133.84 Aligned_cols=174 Identities=20% Similarity=0.185 Sum_probs=114.9
Q ss_pred CcceecCCCCCcchHHHHHHHHHc-----CCcEEEecCccccccccchhhhhhHHHHHHHH------hCCCcEEEecccc
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESEKNVRDIFQKAR------SARPCVIFFDELD 753 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~------~~~p~vlfiDEid 753 (934)
.+++|+||||||||++++++++.+ ...++.+++.+..+ ...++..+.... ...+++|||||+|
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~ 112 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEAD 112 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChh
Confidence 459999999999999999999875 45677777654322 122222222221 2568899999999
Q ss_pred ccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHH
Q 002337 754 SLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKA 833 (934)
Q Consensus 754 ~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~ 833 (934)
.+.+. ..+.|+..++.. ..++.+|++||.++.+++++.+ ||. .+.++ |++.++..++++.
T Consensus 113 ~l~~~-------------~~~~l~~~l~~~---~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~-~~~~~~~~~~l~~ 172 (226)
T 2chg_A 113 ALTAD-------------AQAALRRTMEMY---SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFK-PVPKEAMKKRLLE 172 (226)
T ss_dssp GSCHH-------------HHHHHHHHHHHT---TTTEEEEEEESCGGGSCHHHHT--TSE-EEECC-CCCHHHHHHHHHH
T ss_pred hcCHH-------------HHHHHHHHHHhc---CCCCeEEEEeCChhhcCHHHHH--hCc-eeecC-CCCHHHHHHHHHH
Confidence 98531 233344444432 3467888899999999999999 998 78888 4788888999988
Q ss_pred HHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHH
Q 002337 834 LTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLR 908 (934)
Q Consensus 834 ~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~ 908 (934)
..++.+.. .+..+..+++.+ .| +...+.++++.++..+ ..|+.+|+++++.
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~-~g-~~r~l~~~l~~~~~~~----------------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 173 ICEKEGVKITEDGLEALIYIS-GG-DFRKAINALQGAAAIG----------------------EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHTCCBCHHHHHHHHHHH-TT-CHHHHHHHHHHHHHTC----------------------SCBCHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHc-CC-CHHHHHHHHHHHHhcC----------------------ceecHHHHHHHhc
Confidence 77654432 122355666652 22 3444444444433211 2589999999886
No 103
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.41 E-value=1.6e-13 Score=137.96 Aligned_cols=126 Identities=27% Similarity=0.461 Sum_probs=94.2
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc----------CCcEEEecCcccc--ccccchhhhhhHHHHHHHHhC-CCcEEEec
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELI--NMYIGESEKNVRDIFQKARSA-RPCVIFFD 750 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~--~~~~Gese~~v~~lf~~A~~~-~p~vlfiD 750 (934)
+.+++|+||||||||++|+++++.+ +.+++.+++..+. ..+.|..+..++.++..+... .|++||||
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iD 122 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFID 122 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEET
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 5689999999999999999999886 7788888887765 346677777788888887665 78899999
Q ss_pred cccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC-----CCChhhhCCCCcceeeeecCC
Q 002337 751 ELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVN 821 (934)
Q Consensus 751 Eid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~-----~lD~allrpGRfd~~i~v~~P 821 (934)
|+|.+.+.+........+ ...+..++ + ..++.+|++||.++ .+|+++++ ||+. ++++.|
T Consensus 123 e~~~l~~~~~~~~~~~~~-~~~l~~~~---~-----~~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p 186 (187)
T 2p65_A 123 EIHTVVGAGAVAEGALDA-GNILKPML---A-----RGELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQP 186 (187)
T ss_dssp TGGGGSSSSSSCTTSCCT-HHHHHHHH---H-----TTCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSC
T ss_pred CHHHhcccccccccchHH-HHHHHHHH---h-----cCCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCC
Confidence 999998665422111222 22333332 2 24577899999876 68999999 9995 888863
No 104
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=99.39 E-value=3.8e-12 Score=129.15 Aligned_cols=161 Identities=17% Similarity=0.201 Sum_probs=120.7
Q ss_pred cccccccCCCC--ceEEeecHhhhhhccccccceEEEeecCCCcceEEEEEEecCCCCCccccCCCCccCCCCCcccccC
Q 002337 82 ISDAKFASLDD--SALLGLSTCVLKQLSVTSGSLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDGDVHSKHSSPTMLTFP 159 (934)
Q Consensus 82 ~~~~~~~~~d~--~~~v~l~~~~l~~l~~~~G~~v~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (934)
+|.|.++..+| .+.+.|++++|++||++.||.|.|+|.. +..|+|....+.
T Consensus 8 ~L~V~~a~~~D~gr~ivrl~p~~m~~Lgl~~GD~V~I~G~r---~t~a~v~~~~~e------------------------ 60 (185)
T 1cz4_A 8 ILRVAEANSTDPGMSRVRLDESSRRLLDAEIGDVVEIEKVR---KTVGRVYRARPE------------------------ 60 (185)
T ss_dssp EEEEECCSSCCCCSSEEEECHHHHHTTCCCTTCEEEEESSS---EEEEEEEECSST------------------------
T ss_pred EEEEecCcccccCCCEEEECHHHHHHcCCCCCCEEEEEcCC---eEEEEEEEcCcC------------------------
Confidence 57788888888 8899999999999999999999999754 666666654333
Q ss_pred CCCCCCCccccccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCceEEEEEEecCCCCCc
Q 002337 160 SIHLPQDDMELLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKASLIKLGLQSVGQLPKY 239 (934)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~p~~ 239 (934)
.+..+++.|+..++.|+|+..|+ .|+|.|+ ++ ++
T Consensus 61 ----------d~~~g~Irid~~~R~N~gv~iGD----------------------------------~V~V~~~-~~-~~ 94 (185)
T 1cz4_A 61 ----------DENKGIVRIDSVMRNNCGASIGD----------------------------------KVKVRKV-RT-EI 94 (185)
T ss_dssp ----------TTTTSEEECCHHHHHHHTCCTTC----------------------------------EEEEEEE-CC-CB
T ss_pred ----------cCCCCEEEeCHHHHhccCCCCCC----------------------------------EEEEEEC-CC-CC
Confidence 34678999999999999999985 5788884 44 79
Q ss_pred ceeeEEEeeecCCC---CccccccCCchhhhhhhHHHHHHHHHhhccCCCeeecCCEEEEecccCCCCccccccccccCC
Q 002337 240 ASHLRVSFVKIPEC---GTLESLKGSSAIEAEDRQEKIDLALHNYFEVDRYLARGDVFSVCINWNCSSMICIPCRQRLHR 316 (934)
Q Consensus 240 a~~~rv~~~~~p~~---~~~~~~~~~~~~~~~~~q~~~~~~l~~~f~~~r~~~~gd~~~v~~~~~~~~~~~~~~~~~~~~ 316 (934)
|+++++ .|.. .+++ +.++ +..+|++||.. |||.+||+|.+....
T Consensus 95 A~~V~l----~P~~~~~~~~~-~~~~-----------~~~~l~~~l~~-rpv~~Gd~v~v~~~~---------------- 141 (185)
T 1cz4_A 95 AKKVTL----APIIRKDQRLK-FGEG-----------IEEYVQRALIR-RPMLEQDNISVPGLT---------------- 141 (185)
T ss_dssp CSEEEE----EEECSTTCCSC-CCSS-----------HHHHHHHHHTT-CEECTTCEECCSSCC----------------
T ss_pred ccEEEE----ecccccccccc-cccc-----------hHHHHHHHHCC-CcccCCCEEEEeeec----------------
Confidence 997655 4664 4443 3333 37899999975 899999999876310
Q ss_pred CCCc-eEEEEEEEEecCCCeEEEEeCCeeEEEEcC
Q 002337 317 RSDN-IIYFKVVAVEPSEETVLRVNCTKTALVLGG 350 (934)
Q Consensus 317 ~~~~-~~~f~v~~~~~~~~~~~~vd~~~T~lv~~~ 350 (934)
...+ .+.|+|++++|++. .++|. ..|.+...+
T Consensus 142 ~~g~~~~~f~Vv~t~P~~~-~v~Vt-~~T~I~i~~ 174 (185)
T 1cz4_A 142 LAGQTGLLFKVVKTLPSKV-PVEIG-EETKIEIRE 174 (185)
T ss_dssp CSSCCCCEEEEEEESSSSS-CEECC-TTCEEEECS
T ss_pred cCCCeEEEEEEEEEcCCCc-eEEEc-CCeEEEECC
Confidence 0135 78999999999752 33444 567776654
No 105
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.39 E-value=1.5e-12 Score=144.76 Aligned_cols=135 Identities=21% Similarity=0.281 Sum_probs=91.0
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCc------cccccccch-hhhhhHHHHHHHHhCCCcEEEeccccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP------ELINMYIGE-SEKNVRDIFQKARSARPCVIFFDELDSLA 756 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~------~l~~~~~Ge-se~~v~~lf~~A~~~~p~vlfiDEid~l~ 756 (934)
+.++||+||||||||++|+++|+.++.+++.+++. ++.+..... ..... .|.. .....+||||||+|.+.
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~--~~~~-g~l~~~vl~iDEi~~~~ 122 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNF--EVKK-GPVFSNFILADEVNRSP 122 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEE--EEEE-CTTCSSEEEEETGGGSC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCce--Eecc-CcccccEEEEEccccCC
Confidence 46999999999999999999999999999988873 222221111 00000 0000 00013799999999874
Q ss_pred cCCCCCCCCchhHHHHHHhhhhhccCC-------c-CCCCCEEEEEEcCCCC-----CCChhhhCCCCcceeeeecCCCC
Q 002337 757 PARGASGDSGGVMDRVVSQMLAEIDGL-------N-DSSQDLFIIGASNRPD-----LIDPALLRPGRFDKLLYVGVNSD 823 (934)
Q Consensus 757 ~~r~~~~~~~~~~~~v~~~lL~~ldg~-------~-~~~~~v~vI~aTNrp~-----~lD~allrpGRfd~~i~v~~Pp~ 823 (934)
+ ...+.|+..|+.. . ....+++||+|+|..+ .+++++++ ||+..+.++. |+
T Consensus 123 ~-------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~-p~ 186 (331)
T 2r44_A 123 A-------------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTY-LD 186 (331)
T ss_dssp H-------------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCC-CC
T ss_pred H-------------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCC-CC
Confidence 2 2334444433321 1 1234678888888554 38999999 9998999996 78
Q ss_pred HHHHHHHHHHHHhc
Q 002337 824 VSYRERVLKALTRK 837 (934)
Q Consensus 824 ~~~r~~Il~~~~~~ 837 (934)
.+++.+|++.....
T Consensus 187 ~~~~~~il~~~~~~ 200 (331)
T 2r44_A 187 KESELEVMRRVSNM 200 (331)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcccc
Confidence 99999999888765
No 106
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.39 E-value=5.5e-13 Score=118.39 Aligned_cols=75 Identities=25% Similarity=0.403 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccH
Q 002337 821 NSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEY 900 (934)
Q Consensus 821 Pp~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~ 900 (934)
|||.++|.+||+.+++++++..++|+..||+. |+|||||||.++|++|++.|+++. ...|++
T Consensus 10 ~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~-T~G~SGADL~~l~~eAa~~alr~~-----------------~~~I~~ 71 (86)
T 2krk_A 10 HPNEEARLDILKIHSRKMNLTRGINLRKIAEL-MPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQ 71 (86)
T ss_dssp CCCHHHHHHHHHHHTTTSEECTTCCCHHHHHT-CSSCCHHHHHHHHHHHHHHHHHTT-----------------CSEECH
T ss_pred CcCHHHHHHHHHHHHcCCCCCcccCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHc-----------------CCCCCH
Confidence 79999999999999999999999999999999 699999999999999999999873 246999
Q ss_pred HHHHHHHHhhCCC
Q 002337 901 DDFVKVLRELSPS 913 (934)
Q Consensus 901 ~df~~al~~~~ps 913 (934)
+||++|+++++|.
T Consensus 72 ~df~~Al~~v~p~ 84 (86)
T 2krk_A 72 EDFEMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHccC
Confidence 9999999999885
No 107
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=8.4e-13 Score=148.55 Aligned_cols=177 Identities=19% Similarity=0.241 Sum_probs=117.7
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc------CCcEEEecCcccccc----------------ccchhhh-hhHHHHHHH
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC------SLNFLSVKGPELINM----------------YIGESEK-NVRDIFQKA 739 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~------~~~~i~v~~~~l~~~----------------~~Gese~-~v~~lf~~A 739 (934)
.+..++|+||||||||++++++++.. +..++.+++...... ..|.+.. ....+++..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 123 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAV 123 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999987 888999987543211 1122222 244455544
Q ss_pred HhC-CCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCC---CCCChhhhCCCCcc-e
Q 002337 740 RSA-RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP---DLIDPALLRPGRFD-K 814 (934)
Q Consensus 740 ~~~-~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp---~~lD~allrpGRfd-~ 814 (934)
... .|+||+|||++.+...++ ..++..++..++.. ...++.+|++||.+ +.+++.+.+ ||. +
T Consensus 124 ~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~~~~--~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~ 190 (386)
T 2qby_A 124 RDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRINSEV--NKSKISFIGITNDVKFVDLLDPRVKS--SLSEE 190 (386)
T ss_dssp HTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHHHSC--CC--EEEEEEESCGGGGGGCTTHHHH--TTTTE
T ss_pred hccCCeEEEEEcChhhhhccCc---------CHHHHHHhhchhhc--CCCeEEEEEEECCCChHhhhCHHHhc--cCCCe
Confidence 443 389999999999975421 12556666666554 23578899999987 467888888 776 4
Q ss_pred eeeecCCCCHHHHHHHHHHHHhcC----CCCcCCCHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHH
Q 002337 815 LLYVGVNSDVSYRERVLKALTRKF----KLLEDVSLYSIAKKCPP--NFTGADMYALCADAWFHAAK 875 (934)
Q Consensus 815 ~i~v~~Pp~~~~r~~Il~~~~~~~----~~~~~~~l~~la~~~t~--g~sgaDl~~l~~~A~~~A~~ 875 (934)
.+.++ |++.++..+|++..++.. .+.. ..+..+++.+ . +-+...+.++|+.|+..|..
T Consensus 191 ~i~l~-~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~l~~~~-~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 191 EIIFP-PYNAEELEDILTKRAQMAFKPGVLPD-NVIKLCAALA-AREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp EEEEC-CCCHHHHHHHHHHHHHHHBCSSCSCH-HHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEeC-CCCHHHHHHHHHHHHHhhccCCCCCH-HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHh
Confidence 88998 588999999998876532 2211 1234455542 2 13445667788888766653
No 108
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.38 E-value=5.9e-12 Score=142.20 Aligned_cols=173 Identities=15% Similarity=0.132 Sum_probs=116.5
Q ss_pred cceecCCCCCcchHHHHHHHHHc----CCcEEEecCcccccc---------c-------cchhhhh-hHHHHHHHH-hCC
Q 002337 686 GVLLYGPPGTGKTLLAKAVATEC----SLNFLSVKGPELINM---------Y-------IGESEKN-VRDIFQKAR-SAR 743 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~----~~~~i~v~~~~l~~~---------~-------~Gese~~-v~~lf~~A~-~~~ 743 (934)
.++|+||||||||++++++++.. +..++.+++....+. . .|.+... ...+..... ...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 79999999999999999999988 678899997654321 0 1111111 222222222 245
Q ss_pred CcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcC-CCCCEEEEEEcCCC---CCCChhhhCCCCcce-eeee
Q 002337 744 PCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLND-SSQDLFIIGASNRP---DLIDPALLRPGRFDK-LLYV 818 (934)
Q Consensus 744 p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~-~~~~v~vI~aTNrp---~~lD~allrpGRfd~-~i~v 818 (934)
|.||||||+|.+. ...+..|+..++.... ...++.+|++||.+ +.+++.+.+ ||.. .+.+
T Consensus 126 ~~vlilDE~~~l~-------------~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~ 190 (389)
T 1fnn_A 126 YMFLVLDDAFNLA-------------PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRF 190 (389)
T ss_dssp CEEEEEETGGGSC-------------HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEEC
T ss_pred eEEEEEECccccc-------------hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEe
Confidence 8899999999982 2355666666654421 01478899999988 678999888 8876 7888
Q ss_pred cCCCCHHHHHHHHHHHHhcC---CCCcCCCHHHHHhhCCC--------CCCHHHHHHHHHHHHHHHHH
Q 002337 819 GVNSDVSYRERVLKALTRKF---KLLEDVSLYSIAKKCPP--------NFTGADMYALCADAWFHAAK 875 (934)
Q Consensus 819 ~~Pp~~~~r~~Il~~~~~~~---~~~~~~~l~~la~~~t~--------g~sgaDl~~l~~~A~~~A~~ 875 (934)
+ |++.++..++++..+... ....+..+..+++. +. +-....+.++|+.|+..|..
T Consensus 191 ~-pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 191 S-PYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADI-TGAQTPLDTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp C-CCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHH-HSBSSTTCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH-HhhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 8 588888999998877641 11122235666766 33 22446778888888877754
No 109
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.37 E-value=3.3e-12 Score=140.20 Aligned_cols=188 Identities=11% Similarity=0.155 Sum_probs=121.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccc------------cchH-HHHHHHHHHhhcCCCE
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSE------------RKTS-AALAQAFNTAQSYSPT 458 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~------------g~~e-~~L~~~f~~A~~~~P~ 458 (934)
++..++||+||||||||++|+++|+.+ +.+++.++|..+..... +... ..+. .......++
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~---~~~~~~~~~ 121 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLT---EAVRRRPYS 121 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHH---HHHHHCSSE
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHH---HHHHhCCCe
Confidence 344579999999999999999999998 45699999987543210 0000 1222 222233468
Q ss_pred EEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCC------
Q 002337 459 ILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADS------ 532 (934)
Q Consensus 459 IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~------ 532 (934)
++||||+|.+.+ .+...|.++++.... ...........++++|+|||.
T Consensus 122 vl~lDEi~~l~~----------------~~~~~Ll~~le~~~~----------~~~~~~~~~~~~~iiI~ttn~~~~~i~ 175 (311)
T 4fcw_A 122 VILFDAIEKAHP----------------DVFNILLQMLDDGRL----------TDSHGRTVDFRNTVIIMTSNLGSPLIL 175 (311)
T ss_dssp EEEEETGGGSCH----------------HHHHHHHHHHHHSEE----------ECTTSCEEECTTEEEEEEESTTHHHHH
T ss_pred EEEEeChhhcCH----------------HHHHHHHHHHhcCEE----------EcCCCCEEECCCcEEEEecccCHHHHH
Confidence 999999997754 223333333321100 000000112346789999998
Q ss_pred --------------------CCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccC----C-CCchHHHHHHHh
Q 002337 533 --------------------SEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTS----D-TGSEEFVKDIIG 587 (934)
Q Consensus 533 --------------------~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~----d-~~~~~~L~~la~ 587 (934)
...+++++.+||+..+.+++|+.+++..|++.+++....... . .-.+..++.++.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (311)
T 4fcw_A 176 EGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAE 255 (311)
T ss_dssp TTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred hhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHH
Confidence 346889999999999999999999999999998764311000 0 112455666766
Q ss_pred hcC--CCChHHHHHHHHHHHHHHHHh
Q 002337 588 QTS--GFMPRDLHALVADAGANLIRK 611 (934)
Q Consensus 588 ~t~--Gfv~~DL~~L~~~A~~~ai~r 611 (934)
..- .+..+++..+++.+...++.+
T Consensus 256 ~~~~~~gn~R~L~~~i~~~~~~~~~~ 281 (311)
T 4fcw_A 256 RGYDPVFGARPLRRVIQRELETPLAQ 281 (311)
T ss_dssp HSCBTTTBTTTHHHHHHHHTHHHHHH
T ss_pred hCCCccCCchhHHHHHHHHHHHHHHH
Confidence 544 577899999998887766544
No 110
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.36 E-value=1.9e-12 Score=152.77 Aligned_cols=164 Identities=21% Similarity=0.258 Sum_probs=107.5
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhh-------hhHHHHHHH-----HhCCCcEEEec
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEK-------NVRDIFQKA-----RSARPCVIFFD 750 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~-------~v~~lf~~A-----~~~~p~vlfiD 750 (934)
++.++||+||||||||++|+++|++++.+++.++++++.+.+..+... .++.+|..+ ....++|||||
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 467999999999999999999999999999999998876654432221 134455544 23568999999
Q ss_pred cccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHH
Q 002337 751 ELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERV 830 (934)
Q Consensus 751 Eid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~I 830 (934)
|+|.+.... .+ .+..|+..++. ....+++|+++.....+. .+. |+...+.|+. |+.+++.++
T Consensus 156 Eid~l~~~~-----~~-----~l~~L~~~l~~---~~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~-~~~~~~~~~ 217 (516)
T 1sxj_A 156 EVDGMSGGD-----RG-----GVGQLAQFCRK---TSTPLILICNERNLPKMR-PFD---RVCLDIQFRR-PDANSIKSR 217 (516)
T ss_dssp SGGGCCTTS-----TT-----HHHHHHHHHHH---CSSCEEEEESCTTSSTTG-GGT---TTSEEEECCC-CCHHHHHHH
T ss_pred CCCccchhh-----HH-----HHHHHHHHHHh---cCCCEEEEEcCCCCccch-hhH---hceEEEEeCC-CCHHHHHHH
Confidence 999997532 11 12333333332 233466665554444444 343 5566899995 788888888
Q ss_pred HHHHHhc--CCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHH
Q 002337 831 LKALTRK--FKLLEDVSLYSIAKKCPPNFTGADMYALCADAW 870 (934)
Q Consensus 831 l~~~~~~--~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~ 870 (934)
++....+ ..+.++ .+..+++.+ ++|++.+++...
T Consensus 218 L~~i~~~~~~~i~~~-~l~~la~~s-----~GdiR~~i~~L~ 253 (516)
T 1sxj_A 218 LMTIAIREKFKLDPN-VIDRLIQTT-----RGDIRQVINLLS 253 (516)
T ss_dssp HHHHHHHHTCCCCTT-HHHHHHHHT-----TTCHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHH-HHHHHHHHc-----CCcHHHHHHHHH
Confidence 8776654 344433 377788773 456666665443
No 111
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.36 E-value=6.6e-12 Score=164.24 Aligned_cols=119 Identities=25% Similarity=0.304 Sum_probs=86.2
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCcccc----ccc------------cchhhhhhHHHHHHH
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELI----NMY------------IGESEKNVRDIFQKA 739 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~----~~~------------~Gese~~v~~lf~~A 739 (934)
.|+.++.+++|+||||||||++|.+++.+. +.....++..+.+ ... ....|+.++.++..+
T Consensus 1422 GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv 1501 (2050)
T 3cmu_A 1422 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1501 (2050)
T ss_dssp SSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHH
Confidence 468999999999999999999999997765 3445555544322 111 224567788888899
Q ss_pred HhCCCcEEEeccccccccCC---CCCCCCch-hHHHHHHhhhhhccCCcCCCCCEEEEEEcCCC
Q 002337 740 RSARPCVIFFDELDSLAPAR---GASGDSGG-VMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 799 (934)
Q Consensus 740 ~~~~p~vlfiDEid~l~~~r---~~~~~~~~-~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp 799 (934)
+..+|++|||||++.+.+.+ +..+++.. ...|+++++|.+|++... ..++.|| +||.+
T Consensus 1502 r~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~-~~~v~VI-~tNq~ 1563 (2050)
T 3cmu_A 1502 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK-QSNTLLI-FINQI 1563 (2050)
T ss_dssp HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH-TTTCEEE-EEECE
T ss_pred hcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHH-hCCcEEE-EEccc
Confidence 99999999999999999853 33333222 247899999999998865 3566666 55544
No 112
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.35 E-value=2.8e-12 Score=133.70 Aligned_cols=180 Identities=18% Similarity=0.225 Sum_probs=118.6
Q ss_pred CcceecCCCCCcchHHHHHHHHHcCCcEEEec--C--------------cccccccc--chhhhhhHHHHHHHH----hC
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVK--G--------------PELINMYI--GESEKNVRDIFQKAR----SA 742 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~~~~i~v~--~--------------~~l~~~~~--Gese~~v~~lf~~A~----~~ 742 (934)
..++|+||||+|||++++++++..+.....+. + .++..... ......++.+++.+. ..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 125 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcC
Confidence 47899999999999999999987643211000 0 01111000 112233555555543 23
Q ss_pred CCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCC
Q 002337 743 RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNS 822 (934)
Q Consensus 743 ~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp 822 (934)
.|.+|+|||+|.+. ....+.|+..++.. ..++.+|++||+++.+++++++ |+ ..+.++ |+
T Consensus 126 ~~~vlviDe~~~l~-------------~~~~~~l~~~l~~~---~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~-~l 185 (250)
T 1njg_A 126 RFKVYLIDEVHMLS-------------RHSFNALLKTLEEP---PEHVKFLLATTDPQKLPVTILS--RC-LQFHLK-AL 185 (250)
T ss_dssp SSEEEEEETGGGSC-------------HHHHHHHHHHHHSC---CTTEEEEEEESCGGGSCHHHHT--TS-EEEECC-CC
T ss_pred CceEEEEECccccc-------------HHHHHHHHHHHhcC---CCceEEEEEeCChHhCCHHHHH--Hh-hhccCC-CC
Confidence 57899999999874 22445566655543 3568889999999999999998 75 678888 57
Q ss_pred CHHHHHHHHHHHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHH
Q 002337 823 DVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYD 901 (934)
Q Consensus 823 ~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~ 901 (934)
+.++..++++..+++.... .+..+..+++.+ .| +.+++.++|+.|...+ ...|+.+
T Consensus 186 ~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~G-~~~~~~~~~~~~~~~~---------------------~~~i~~~ 242 (250)
T 1njg_A 186 DVEQIRHQLEHILNEEHIAHEPRALQLLARAA-EG-SLRDALSLTDQAIASG---------------------DGQVSTQ 242 (250)
T ss_dssp CHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH-TT-CHHHHHHHHHHHHTTT---------------------TSSBCHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CC-CHHHHHHHHHHHHhcc---------------------CceecHH
Confidence 8889999998888765432 122366788884 55 6778888887663111 0158899
Q ss_pred HHHHHH
Q 002337 902 DFVKVL 907 (934)
Q Consensus 902 df~~al 907 (934)
|+++++
T Consensus 243 ~v~~~~ 248 (250)
T 1njg_A 243 AVSAML 248 (250)
T ss_dssp HHHHHS
T ss_pred HHHHHh
Confidence 998875
No 113
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.35 E-value=1.6e-12 Score=151.95 Aligned_cols=176 Identities=18% Similarity=0.194 Sum_probs=104.7
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC--cEEEecC-----ccccccccchhhhhhHHHHHHHHhC---CCcEEEecccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL--NFLSVKG-----PELINMYIGESEKNVRDIFQKARSA---RPCVIFFDELD 753 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~--~~i~v~~-----~~l~~~~~Gese~~v~~lf~~A~~~---~p~vlfiDEid 753 (934)
+.++||+||||||||++|+++|..++. +|..+.+ +++++.+.+..... ...|..+... .++|||||||+
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~ 119 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIW 119 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGG
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHh
Confidence 469999999999999999999998843 4555444 34444443332211 1223222222 47899999998
Q ss_pred ccccCCCCCCCCchhHHHHHHhhhhhcc-------CCcCCCCCEEEEEEcCCCCC---CChhhhCCCCcceeeeecCCCC
Q 002337 754 SLAPARGASGDSGGVMDRVVSQMLAEID-------GLNDSSQDLFIIGASNRPDL---IDPALLRPGRFDKLLYVGVNSD 823 (934)
Q Consensus 754 ~l~~~r~~~~~~~~~~~~v~~~lL~~ld-------g~~~~~~~v~vI~aTNrp~~---lD~allrpGRfd~~i~v~~Pp~ 823 (934)
.+. ..+.+.|+..|+ |........++|+|||.+.. ..+++++ ||...++++.|.+
T Consensus 120 r~~-------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~ 184 (500)
T 3nbx_X 120 KAG-------------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQD 184 (500)
T ss_dssp GCC-------------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCC
T ss_pred hhc-------------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhh
Confidence 653 245566666654 22111112256778886432 4469999 9999999998666
Q ss_pred HHHHHHHHHHHHhc-------------------------CCCCcCCCHHHHHhhC--------CCCCCHHHHHHHHHHHH
Q 002337 824 VSYRERVLKALTRK-------------------------FKLLEDVSLYSIAKKC--------PPNFTGADMYALCADAW 870 (934)
Q Consensus 824 ~~~r~~Il~~~~~~-------------------------~~~~~~~~l~~la~~~--------t~g~sgaDl~~l~~~A~ 870 (934)
.+++..|++..... ..+.+++ +..++..+ ..|.+.+.+.++++.|.
T Consensus 185 ~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v-~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~ 263 (500)
T 3nbx_X 185 KANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV-FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQ 263 (500)
T ss_dssp HHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH-HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHH
T ss_pred hhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH-HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHH
Confidence 68888888754321 1111111 22232221 24778888888888776
Q ss_pred HHHHHH
Q 002337 871 FHAAKR 876 (934)
Q Consensus 871 ~~A~~r 876 (934)
..|.-+
T Consensus 264 A~A~l~ 269 (500)
T 3nbx_X 264 ASAFFS 269 (500)
T ss_dssp HHHHHT
T ss_pred HHHhhc
Confidence 666543
No 114
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.35 E-value=3.7e-12 Score=147.34 Aligned_cols=174 Identities=13% Similarity=0.209 Sum_probs=115.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhcccc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNL 471 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el-----g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~ 471 (934)
..+++|+||||||||+|++++++++ +..++.+++.++...............|.......+.+|||||++.+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 4569999999999999999999998 88899999887543322111111111233332236899999999988641
Q ss_pred ccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCC---CChhhhcccc--e
Q 002337 472 VSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG---LPPTIRRCFS--H 546 (934)
Q Consensus 472 ~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~---Ld~aLrrrF~--~ 546 (934)
. ....++...++.+.+ .+..++|++.+.+.. +++++++||. .
T Consensus 210 ~----------~~q~~l~~~l~~l~~-----------------------~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~ 256 (440)
T 2z4s_A 210 T----------GVQTELFHTFNELHD-----------------------SGKQIVICSDREPQKLSEFQDRLVSRFQMGL 256 (440)
T ss_dssp H----------HHHHHHHHHHHHHHT-----------------------TTCEEEEEESSCGGGCSSCCHHHHHHHHSSB
T ss_pred h----------HHHHHHHHHHHHHHH-----------------------CCCeEEEEECCCHHHHHHHHHHHHhhccCCe
Confidence 1 122344444444321 344566666555544 8899999986 6
Q ss_pred EEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 002337 547 EISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANL 608 (934)
Q Consensus 547 eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~a 608 (934)
.+.+++|+.++|.+|++..+..... ..+ +..++.++..+.| ..+++..++..+...+
T Consensus 257 ~i~l~~p~~e~r~~iL~~~~~~~~~---~i~-~e~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 257 VAKLEPPDEETRKSIARKMLEIEHG---ELP-EEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp CCBCCCCCHHHHHHHHHHHHHHHTC---CCC-TTHHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 8999999999999999988754322 122 2346777777764 6677877777765544
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.35 E-value=5.7e-12 Score=139.63 Aligned_cols=168 Identities=13% Similarity=0.222 Sum_probs=112.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhcccccc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVS 473 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~ 473 (934)
+.+++|+||||||||++++++++++ +.+++.++|.++.....+.........|.... ..+.+|||||++.+....
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~- 114 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE- 114 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH-
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh-
Confidence 4579999999999999999999999 89999999987654332222211112222222 247899999999876411
Q ss_pred CCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC---CCChhhhcccc--eEE
Q 002337 474 NESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE---GLPPTIRRCFS--HEI 548 (934)
Q Consensus 474 ~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~---~Ld~aLrrrF~--~eI 548 (934)
....++...++.+. ..+..+++++++.+. .+++++++||. ..+
T Consensus 115 ---------~~~~~l~~~l~~~~-----------------------~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i 162 (324)
T 1l8q_A 115 ---------RTQIEFFHIFNTLY-----------------------LLEKQIILASDRHPQKLDGVSDRLVSRFEGGILV 162 (324)
T ss_dssp ---------HHHHHHHHHHHHHH-----------------------HTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEE
T ss_pred ---------HHHHHHHHHHHHHH-----------------------HCCCeEEEEecCChHHHHHhhhHhhhcccCceEE
Confidence 12233444443332 134457777777665 68999999986 579
Q ss_pred EcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHH
Q 002337 549 SMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAG 605 (934)
Q Consensus 549 ~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~ 605 (934)
.+++ +.++|.+|++..+..... ..+ +..++.++..+ | ..+++..++..+.
T Consensus 163 ~l~~-~~~e~~~il~~~~~~~~~---~l~-~~~l~~l~~~~-g-~~r~l~~~l~~~~ 212 (324)
T 1l8q_A 163 EIEL-DNKTRFKIIKEKLKEFNL---ELR-KEVIDYLLENT-K-NVREIEGKIKLIK 212 (324)
T ss_dssp ECCC-CHHHHHHHHHHHHHHTTC---CCC-HHHHHHHHHHC-S-SHHHHHHHHHHHH
T ss_pred EeCC-CHHHHHHHHHHHHHhcCC---CCC-HHHHHHHHHhC-C-CHHHHHHHHHHHH
Confidence 9999 999999999998864322 222 45577788877 4 4566666665543
No 116
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.35 E-value=8.4e-12 Score=137.42 Aligned_cols=154 Identities=9% Similarity=0.071 Sum_probs=108.3
Q ss_pred HHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEecCcccccc------
Q 002337 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMASS------ 437 (934)
Q Consensus 374 ~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~el----------g~~~~~I~~~~L~~~~------ 437 (934)
+..+.+...+.+.+.. ..+.+++|+||||||||++++.+++++ +..++.+||..+.+.+
T Consensus 27 ~E~~~i~~~L~~~i~~-----~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 27 EDFTRIFLPIYDSLMS-----SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHT-----TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-----CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 3445555555554432 456789999999999999999999998 3578899998654321
Q ss_pred ----------ccchHHHHHHHHHHh--hcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCcccccc
Q 002337 438 ----------ERKTSAALAQAFNTA--QSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDE 505 (934)
Q Consensus 438 ----------~g~~e~~L~~~f~~A--~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~ 505 (934)
.+.....++..|... ....++|++|||+|.|.. ..-+..++ ++.
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~--------------q~~L~~l~-~~~--------- 157 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS--------------EKILQYFE-KWI--------- 157 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC--------------THHHHHHH-HHH---------
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc--------------chHHHHHH-hcc---------
Confidence 133556788888875 345689999999998861 01122222 111
Q ss_pred ccCCCCchhhhhhhhcccEEEEEecCCCCC----CChhhhcccc-eEEEcCCCCHHHHHHHHHHhccc
Q 002337 506 ESHGYFPVKEIEKICRQQVLLVAAADSSEG----LPPTIRRCFS-HEISMGPLTEQQRVEMLSQLLQP 568 (934)
Q Consensus 506 ~~~g~~~~~~~~~~~~~~ViVIatTn~~~~----Ld~aLrrrF~-~eI~i~~Pde~~R~~IL~~ll~~ 568 (934)
.....++++|+++|..+. +++++++||. +.|.|++++.+|..+|++..++.
T Consensus 158 ------------~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 158 ------------SSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp ------------HCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ------------cccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 112567899999998764 3455677886 58999999999999999988764
No 117
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.35 E-value=5e-11 Score=134.18 Aligned_cols=197 Identities=22% Similarity=0.251 Sum_probs=122.0
Q ss_pred HHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHh---------CCcEEEEecCcccccc-------
Q 002337 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL---------GIHVVEYSCHNLMASS------- 437 (934)
Q Consensus 374 ~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~el---------g~~~~~I~~~~L~~~~------- 437 (934)
+..+.+...+...+.. ..+.+++|+||||||||++++++++++ +..++.++|....+..
T Consensus 26 ~~~~~l~~~l~~~~~~-----~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 100 (387)
T 2v1u_A 26 AELRRLAEVLAPALRG-----EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIA 100 (387)
T ss_dssp HHHHHHHHTTGGGTSS-----CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHH
Confidence 3455555555443322 345679999999999999999999998 7889999997643211
Q ss_pred ---------ccc-hHHHHHHHHHHhhcC-CCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccc
Q 002337 438 ---------ERK-TSAALAQAFNTAQSY-SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEE 506 (934)
Q Consensus 438 ---------~g~-~e~~L~~~f~~A~~~-~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~ 506 (934)
.+. ....+..++...... .|++|+|||+|.+.... .....+..+++ .....
T Consensus 101 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----------~~~~~l~~l~~-~~~~~------- 162 (387)
T 2v1u_A 101 EAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----------GGQDLLYRITR-INQEL------- 162 (387)
T ss_dssp HHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----------THHHHHHHHHH-GGGCC-------
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----------CCChHHHhHhh-chhhc-------
Confidence 111 222344455444333 48899999999886510 01112222221 11100
Q ss_pred cCCCCchhhhhhhhcccEEEEEecCCC---CCCChhhhcccce-EEEcCCCCHHHHHHHHHHhccccccccCCCCchHHH
Q 002337 507 SHGYFPVKEIEKICRQQVLLVAAADSS---EGLPPTIRRCFSH-EISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFV 582 (934)
Q Consensus 507 ~~g~~~~~~~~~~~~~~ViVIatTn~~---~~Ld~aLrrrF~~-eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L 582 (934)
....++.+|++||.+ ..+++.+++||.. .+.+++|+.+++.+|++..+.... ....-.+..+
T Consensus 163 ------------~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~--~~~~~~~~~~ 228 (387)
T 2v1u_A 163 ------------GDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAF--NPGVLDPDVV 228 (387)
T ss_dssp -----------------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHB--CTTTBCSSHH
T ss_pred ------------CCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhc--cCCCCCHHHH
Confidence 004568899999887 6789999999875 899999999999999998875310 0011112334
Q ss_pred HHHHhhcC---CCChHHHHHHHHHHHHHH
Q 002337 583 KDIIGQTS---GFMPRDLHALVADAGANL 608 (934)
Q Consensus 583 ~~la~~t~---Gfv~~DL~~L~~~A~~~a 608 (934)
+.++..+. | .++.+..+++.|...+
T Consensus 229 ~~l~~~~~~~~G-~~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 229 PLCAALAAREHG-DARRALDLLRVAGEIA 256 (387)
T ss_dssp HHHHHHHHSSSC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHHHH
Confidence 55665555 4 4556667777775444
No 118
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.33 E-value=1e-11 Score=136.95 Aligned_cols=178 Identities=16% Similarity=0.176 Sum_probs=117.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccCC
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNE 475 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~ 475 (934)
.+.++||+||+|||||++|++++++++.+++.++|..+.. ...+...+..+ ...++++||||++.+...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~---- 105 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS-LEEGDILFIDEIHRLSRQ---- 105 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT-CCTTCEEEETTTTSCCHH----
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh-ccCCCEEEEECCcccccc----
Confidence 3457999999999999999999999999999999986532 23333344331 145789999999977541
Q ss_pred CCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCH
Q 002337 476 SLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTE 555 (934)
Q Consensus 476 ~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde 555 (934)
....+...+....-.. ..+.............++.+|++||.+..+++++++||...+.+++|+.
T Consensus 106 --------~~~~L~~~l~~~~~~~-------v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~ 170 (324)
T 1hqc_A 106 --------AEEHLYPAMEDFVMDI-------VIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTP 170 (324)
T ss_dssp --------HHHHHHHHHHHSEEEE-------CCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCH
T ss_pred --------hHHHHHHHHHhhhhHH-------hccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCH
Confidence 1122333333221000 0000000000000124688999999999999999999988999999999
Q ss_pred HHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHH
Q 002337 556 QQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 556 ~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A 604 (934)
+++.++++.++..... .. ....++.++..+.|. ++.+..++..+
T Consensus 171 ~e~~~~l~~~~~~~~~---~~-~~~~~~~l~~~~~G~-~r~l~~~l~~~ 214 (324)
T 1hqc_A 171 EELAQGVMRDARLLGV---RI-TEEAALEIGRRSRGT-MRVAKRLFRRV 214 (324)
T ss_dssp HHHHHHHHHHHHTTTC---CC-CHHHHHHHHHHSCSC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC---CC-CHHHHHHHHHHccCC-HHHHHHHHHHH
Confidence 9999999988764322 22 245577788887664 46666666654
No 119
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.32 E-value=1.4e-12 Score=144.48 Aligned_cols=126 Identities=25% Similarity=0.285 Sum_probs=93.2
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhC-----CCcEEEeccccccccC
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSA-----RPCVIFFDELDSLAPA 758 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~-----~p~vlfiDEid~l~~~ 758 (934)
+..+|++||||||||++|+++|++++.+++.+++++. + ...++..+..+... .++||||||+|.+.+
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-----~--~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~- 119 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC-----K--IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL- 119 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-----C--HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-----C--HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-
Confidence 4567888999999999999999999999999998763 2 34455554443332 578999999999851
Q ss_pred CCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHHH
Q 002337 759 RGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKALT 835 (934)
Q Consensus 759 r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~ 835 (934)
....+.|+..++.. ..++.+|++||+++.+++++++ ||. .+.|+. |+.++|.+|++.+.
T Consensus 120 -----------~~~~~~L~~~le~~---~~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~-~~~~e~~~il~~~~ 178 (324)
T 3u61_B 120 -----------AESQRHLRSFMEAY---SSNCSIIITANNIDGIIKPLQS--RCR-VITFGQ-PTDEDKIEMMKQMI 178 (324)
T ss_dssp -----------HHHHHHHHHHHHHH---GGGCEEEEEESSGGGSCTTHHH--HSE-EEECCC-CCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhC---CCCcEEEEEeCCccccCHHHHh--hCc-EEEeCC-CCHHHHHHHHHHHH
Confidence 12334455555433 2457788899999999999999 995 688884 78888777665543
No 120
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.32 E-value=2.5e-11 Score=127.27 Aligned_cols=164 Identities=11% Similarity=0.110 Sum_probs=108.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC---CcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhcccccc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLG---IHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVS 473 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg---~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~ 473 (934)
+.+++|+||||||||+++++++++++ ..+..+++.++...... .+... ..+.+++|||++.+....
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~vliiDe~~~~~~~~- 120 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA--------LLEGL--EQFDLICIDDVDAVAGHP- 120 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG--------GGTTG--GGSSEEEEETGGGGTTCH-
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--------HHHhc--cCCCEEEEeccccccCCH-
Confidence 46799999999999999999999874 67888988776543211 11111 347899999999875410
Q ss_pred CCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccE-EEEEecCCCC---CCChhhhcccc--eE
Q 002337 474 NESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQV-LLVAAADSSE---GLPPTIRRCFS--HE 547 (934)
Q Consensus 474 ~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~V-iVIatTn~~~---~Ld~aLrrrF~--~e 547 (934)
.....+...++... ..+.+ ++++++..+. .+.+++++||. ..
T Consensus 121 ---------~~~~~l~~~l~~~~-----------------------~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~ 168 (242)
T 3bos_A 121 ---------LWEEAIFDLYNRVA-----------------------EQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLT 168 (242)
T ss_dssp ---------HHHHHHHHHHHHHH-----------------------HHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEE
T ss_pred ---------HHHHHHHHHHHHHH-----------------------HcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCce
Confidence 01222333333221 12333 4555544443 45688988885 79
Q ss_pred EEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 002337 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANL 608 (934)
Q Consensus 548 I~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~a 608 (934)
+.+++|+.+++.++++.+++.... .. .+..++.++..+.| ..+.+..+++.+...+
T Consensus 169 i~l~~~~~~~~~~~l~~~~~~~~~---~~-~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 169 YQLQPMMDDEKLAALQRRAAMRGL---QL-PEDVGRFLLNRMAR-DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp EECCCCCGGGHHHHHHHHHHHTTC---CC-CHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 999999999999999998764322 22 24556777777755 5677777777665544
No 121
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.31 E-value=1.7e-11 Score=135.58 Aligned_cols=170 Identities=16% Similarity=0.262 Sum_probs=113.6
Q ss_pred hHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHh
Q 002337 373 GDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTA 452 (934)
Q Consensus 373 ~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A 452 (934)
.+..+.+...+.. ...+..+|++||||||||++++++|++++.+++++++++.. ...++..+...
T Consensus 32 ~~~~~~l~~~l~~--------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-------~~~i~~~~~~~ 96 (324)
T 3u61_B 32 AFDKETFKSITSK--------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-------IDFVRGPLTNF 96 (324)
T ss_dssp HHHHHHHHHHHHT--------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-------HHHHHTHHHHH
T ss_pred HHHHHHHHHHHHc--------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-------HHHHHHHHHHH
Confidence 3456666666541 13344578889999999999999999999999999987521 33444444332
Q ss_pred hcC-----CCEEEEEcchhhcc-ccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEE
Q 002337 453 QSY-----SPTILLLRDFDVFR-NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLL 526 (934)
Q Consensus 453 ~~~-----~P~IL~IDEID~L~-~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViV 526 (934)
... .+.+++|||+|.+. . +....|..+++. ....+.+
T Consensus 97 ~~~~~~~~~~~vliiDEi~~l~~~----------------~~~~~L~~~le~---------------------~~~~~~i 139 (324)
T 3u61_B 97 ASAASFDGRQKVIVIDEFDRSGLA----------------ESQRHLRSFMEA---------------------YSSNCSI 139 (324)
T ss_dssp HHBCCCSSCEEEEEEESCCCGGGH----------------HHHHHHHHHHHH---------------------HGGGCEE
T ss_pred HhhcccCCCCeEEEEECCcccCcH----------------HHHHHHHHHHHh---------------------CCCCcEE
Confidence 222 57899999999886 3 122233333221 1356788
Q ss_pred EEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccc----cCCCCchHHHHHHHhhcCCCChH
Q 002337 527 VAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSEL----TSDTGSEEFVKDIIGQTSGFMPR 595 (934)
Q Consensus 527 IatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l----~~d~~~~~~L~~la~~t~Gfv~~ 595 (934)
|++||.+..+++++++||. .+.+++|+.++|.+|++.+++..... ....+....++.++..+.|-...
T Consensus 140 I~~~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 140 IITANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp EEEESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH
T ss_pred EEEeCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH
Confidence 9999999999999999995 79999999999887766654321100 11222125677788777664443
No 122
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.31 E-value=4.1e-12 Score=127.60 Aligned_cols=127 Identities=17% Similarity=0.289 Sum_probs=90.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh----------CCcEEEEecCcccc--ccccchHHHHHHHHHHhhcC-CCEEEEEc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL----------GIHVVEYSCHNLMA--SSERKTSAALAQAFNTAQSY-SPTILLLR 463 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el----------g~~~~~I~~~~L~~--~~~g~~e~~L~~~f~~A~~~-~P~IL~ID 463 (934)
+.+++|+||+|||||++++++++++ +.+++.+++..+.. .+.+.....++.++..+... .|.+++||
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iD 122 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFID 122 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEET
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 4579999999999999999999997 77888888876653 23345556677777776554 68999999
Q ss_pred chhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-----CCCh
Q 002337 464 DFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPP 538 (934)
Q Consensus 464 EID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~-----~Ld~ 538 (934)
|+|.+.+..... .. ..++...+..+++ ...+++|++||.+. .+++
T Consensus 123 e~~~l~~~~~~~---~~----~~~~~~~l~~~~~-----------------------~~~~~ii~~~~~~~~~~~~~~~~ 172 (187)
T 2p65_A 123 EIHTVVGAGAVA---EG----ALDAGNILKPMLA-----------------------RGELRCIGATTVSEYRQFIEKDK 172 (187)
T ss_dssp TGGGGSSSSSSC---TT----SCCTHHHHHHHHH-----------------------TTCSCEEEEECHHHHHHHTTTCH
T ss_pred CHHHhccccccc---cc----chHHHHHHHHHHh-----------------------cCCeeEEEecCHHHHHHHHhccH
Confidence 999987532100 00 1123333333321 35678899998765 6899
Q ss_pred hhhcccceEEEcCCCC
Q 002337 539 TIRRCFSHEISMGPLT 554 (934)
Q Consensus 539 aLrrrF~~eI~i~~Pd 554 (934)
++++||. .+.++.|+
T Consensus 173 ~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 173 ALERRFQ-QILVEQPS 187 (187)
T ss_dssp HHHHHEE-EEECCSCC
T ss_pred HHHHhcC-cccCCCCC
Confidence 9999998 59999885
No 123
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.29 E-value=4.5e-11 Score=155.08 Aligned_cols=115 Identities=24% Similarity=0.289 Sum_probs=81.8
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHH---cCCcEEEecCcc----------------ccccccchhhhhhHHHHHHHH
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATE---CSLNFLSVKGPE----------------LINMYIGESEKNVRDIFQKAR 740 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~---~~~~~i~v~~~~----------------l~~~~~Gese~~v~~lf~~A~ 740 (934)
|+.+++-|.+|||+|+|||++|-.++.+ .+.....++..+ |+-.+....|..+.-+...++
T Consensus 1427 G~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~ 1506 (1706)
T 3cmw_A 1427 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1506 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHH
Confidence 6666777999999999999999876533 355666666532 333355566888989999999
Q ss_pred hCCCcEEEeccccccccCCCCCC----CCchhHHHHHHhhhhhccCCcCCCCCEEEEEE
Q 002337 741 SARPCVIFFDELDSLAPARGASG----DSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGA 795 (934)
Q Consensus 741 ~~~p~vlfiDEid~l~~~r~~~~----~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~a 795 (934)
..+|++|++|.+..|.|+..-.+ ..-|...|+++|.|..|.+.-.. .++.+|.+
T Consensus 1507 s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~-~~~~~i~~ 1564 (1706)
T 3cmw_A 1507 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ-SNTLLIFI 1564 (1706)
T ss_dssp HTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHH-HTCEEEEE
T ss_pred cCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHh-CCcEEEEe
Confidence 99999999999999999864322 22345678888888888776432 33444443
No 124
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.29 E-value=6.2e-11 Score=122.01 Aligned_cols=155 Identities=14% Similarity=0.206 Sum_probs=104.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHhh------cCCCEEEEEcchhh
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTSAALAQAFNTAQ------SYSPTILLLRDFDV 467 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~el-----g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~------~~~P~IL~IDEID~ 467 (934)
+++|+||+|||||++++++++++ ...++.+++.+..+ ...+...+.... ...+.+++|||+|.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 113 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADA 113 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhh
Confidence 49999999999999999999986 45688888865332 122222222211 24689999999997
Q ss_pred ccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceE
Q 002337 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHE 547 (934)
Q Consensus 468 L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~e 547 (934)
+.. .....|..+++. ....+.+|++||.+..+++++++||. .
T Consensus 114 l~~----------------~~~~~l~~~l~~---------------------~~~~~~~i~~~~~~~~~~~~l~~r~~-~ 155 (226)
T 2chg_A 114 LTA----------------DAQAALRRTMEM---------------------YSKSCRFILSCNYVSRIIEPIQSRCA-V 155 (226)
T ss_dssp SCH----------------HHHHHHHHHHHH---------------------TTTTEEEEEEESCGGGSCHHHHTTSE-E
T ss_pred cCH----------------HHHHHHHHHHHh---------------------cCCCCeEEEEeCChhhcCHHHHHhCc-e
Confidence 754 112223333221 13567888899999999999999997 9
Q ss_pred EEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHH
Q 002337 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVA 602 (934)
Q Consensus 548 I~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~ 602 (934)
+.+++|+.+++.++++..+..... .. ....++.++..+.| .++.+..+++
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~---~~-~~~~~~~l~~~~~g-~~r~l~~~l~ 205 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGV---KI-TEDGLEALIYISGG-DFRKAINALQ 205 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTC---CB-CHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 999999999999999987754322 12 24456777776655 3344444443
No 125
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.29 E-value=1.6e-11 Score=142.06 Aligned_cols=160 Identities=18% Similarity=0.213 Sum_probs=107.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhh----cCCCEEEEEcchhhcccccc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQ----SYSPTILLLRDFDVFRNLVS 473 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~----~~~P~IL~IDEID~L~~~~~ 473 (934)
.++||+|||||||||+++++|+.++.+++.+++.. .....++..+..+. ...+.+|||||+|.+....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~- 122 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVT-------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ- 122 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-
Confidence 46999999999999999999999999999998753 22344555555544 2468999999999885411
Q ss_pred CCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEec--CCCCCCChhhhcccceEEEcC
Q 002337 474 NESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAA--DSSEGLPPTIRRCFSHEISMG 551 (934)
Q Consensus 474 ~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatT--n~~~~Ld~aLrrrF~~eI~i~ 551 (934)
...+. ..++ .+.+++|++| |....+++++++|+. .+.+.
T Consensus 123 -----------q~~LL----~~le-----------------------~~~v~lI~att~n~~~~l~~aL~sR~~-v~~l~ 163 (447)
T 3pvs_A 123 -----------QDAFL----PHIE-----------------------DGTITFIGATTENPSFELNSALLSRAR-VYLLK 163 (447)
T ss_dssp -------------CCH----HHHH-----------------------TTSCEEEEEESSCGGGSSCHHHHTTEE-EEECC
T ss_pred -----------HHHHH----HHHh-----------------------cCceEEEecCCCCcccccCHHHhCcee-EEeeC
Confidence 00111 1111 2446777776 334579999999986 88899
Q ss_pred CCCHHHHHHHHHHhcccccccc--CCC-CchHHHHHHHhhcCCCChHHHHHHHHHHH
Q 002337 552 PLTEQQRVEMLSQLLQPVSELT--SDT-GSEEFVKDIIGQTSGFMPRDLHALVADAG 605 (934)
Q Consensus 552 ~Pde~~R~~IL~~ll~~~~~l~--~d~-~~~~~L~~la~~t~Gfv~~DL~~L~~~A~ 605 (934)
+|+.+++..+++..+.....-. ... -.+..++.++..+.| ..+.+..+++.+.
T Consensus 164 ~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~ 219 (447)
T 3pvs_A 164 SLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMA 219 (447)
T ss_dssp CCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 9999999999999876521100 011 124567777777655 4455555555554
No 126
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.29 E-value=6.8e-12 Score=109.33 Aligned_cols=74 Identities=26% Similarity=0.399 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccH
Q 002337 821 NSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEY 900 (934)
Q Consensus 821 Pp~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~ 900 (934)
+|+.++|.+||+.+++++++..++|+..+|+. |+|||||||.++|++|++.|+++. ...|++
T Consensus 2 lPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~-t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~ 63 (78)
T 3kw6_A 2 PPNEEARLDILKIHSRKMNLTRGINLRKIAEL-MPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQ 63 (78)
T ss_dssp CCCHHHHHHHHHHHHTTSEECTTCCHHHHHHT-CTTCCHHHHHHHHHHHHHHHHHTT-----------------CSEECH
T ss_pred cCCHHHHHHHHHHHhcCCCCCCccCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhC-----------------CCCCCH
Confidence 38999999999999999999899999999999 699999999999999999999863 236999
Q ss_pred HHHHHHHHhhCC
Q 002337 901 DDFVKVLRELSP 912 (934)
Q Consensus 901 ~df~~al~~~~p 912 (934)
+||++|++++..
T Consensus 64 ~d~~~Al~~v~~ 75 (78)
T 3kw6_A 64 EDFEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 127
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.28 E-value=2.2e-12 Score=154.38 Aligned_cols=138 Identities=15% Similarity=0.210 Sum_probs=89.8
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHcCCcEEEe----cCccccccccchhhh----hhHHHHHHHHhCCCcEEEecccc
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSV----KGPELINMYIGESEK----NVRDIFQKARSARPCVIFFDELD 753 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v----~~~~l~~~~~Gese~----~v~~lf~~A~~~~p~vlfiDEid 753 (934)
+...++||+||||||||++|+++|..++..++.. ++.++.......... .-...+..| ..+|+||||+|
T Consensus 325 r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~gil~IDEid 401 (595)
T 3f9v_A 325 RGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA---DGGIAVIDEID 401 (595)
T ss_dssp CCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---SSSEECCTTTT
T ss_pred CCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEec---CCCcEEeehhh
Confidence 3455899999999999999999999887665442 233333322211100 011233333 34699999999
Q ss_pred ccccCCCCCCCCchhHHHHHHhhhhhccCCc----------CCCCCEEEEEEcCCCC-------------CCChhhhCCC
Q 002337 754 SLAPARGASGDSGGVMDRVVSQMLAEIDGLN----------DSSQDLFIIGASNRPD-------------LIDPALLRPG 810 (934)
Q Consensus 754 ~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~----------~~~~~v~vI~aTNrp~-------------~lD~allrpG 810 (934)
.+.+. ..+.|+..|+.-. ....++.||||||+++ .+++++++
T Consensus 402 ~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~-- 466 (595)
T 3f9v_A 402 KMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS-- 466 (595)
T ss_dssp CCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--
T ss_pred hCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--
Confidence 98532 3344555444211 1134688999999987 89999999
Q ss_pred CcceeeeecCCCCHHHHHHHHHHHHhcC
Q 002337 811 RFDKLLYVGVNSDVSYRERVLKALTRKF 838 (934)
Q Consensus 811 Rfd~~i~v~~Pp~~~~r~~Il~~~~~~~ 838 (934)
|||..+.+.-.|+.+ ...|.+..++..
T Consensus 467 RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 467 RFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp GCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred hCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 999655554346777 778888777643
No 128
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.28 E-value=1.6e-12 Score=114.51 Aligned_cols=81 Identities=16% Similarity=0.264 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHH
Q 002337 825 SYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFV 904 (934)
Q Consensus 825 ~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~ 904 (934)
++|.+||+.+++++++..++|+..+|+. |+|||||||.++|++|++.|+++. ...|+++||+
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~-t~G~SGADi~~l~~eAa~~ai~~~-----------------~~~i~~~df~ 62 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIR-NDSLSGAVIAAIMQEAGLRAVRKN-----------------RYVILQSDLE 62 (82)
T ss_dssp -------------CEECTTCCSTTTTTS-SCCCCHHHHHHHHHHHHHHHHHTT-----------------CSEECHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHHH
Confidence 4699999999999999899999999999 699999999999999999999863 1369999999
Q ss_pred HHHHhh-CCCcCHHHHHHHH
Q 002337 905 KVLREL-SPSLSMAELKKYE 923 (934)
Q Consensus 905 ~al~~~-~psvs~~~l~~y~ 923 (934)
+|+.++ .|+.++++++.|.
T Consensus 63 ~Al~~v~~~~~~~~~~~~y~ 82 (82)
T 2dzn_B 63 EAYATQVKTDNTVDKFDFYK 82 (82)
T ss_dssp HHHHTTCC------------
T ss_pred HHHHHHHcCcCChHHHHhhC
Confidence 999998 6889999998884
No 129
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.26 E-value=1.6e-10 Score=156.74 Aligned_cols=323 Identities=17% Similarity=0.251 Sum_probs=174.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh-CCcEEEEecCccccccccchHHHHHHHHHHh----hc------------CCCEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL-GIHVVEYSCHNLMASSERKTSAALAQAFNTA----QS------------YSPTI 459 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el-g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A----~~------------~~P~I 459 (934)
+.+|||+||+|||||++++.+...+ +..++.++++.-. +...+...++.. .. ....|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 4569999999999998876554444 6667888887533 334444444421 00 12369
Q ss_pred EEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-----
Q 002337 460 LLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE----- 534 (934)
Q Consensus 460 L~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~----- 534 (934)
+||||++.-. .+..| ...+.++|+++++. +|++............+.+|||+|.+.
T Consensus 1378 lFiDDiNmp~--~D~yG--------tQ~~ielLrqlld~---------~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~ 1438 (3245)
T 3vkg_A 1378 VFCDEINLPS--TDKYG--------TQRVITFIRQMVEK---------GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRV 1438 (3245)
T ss_dssp EEETTTTCCC--CCTTS--------CCHHHHHHHHHHHH---------SEEEETTTTEEEEESSEEEEEEECCTTSTTCC
T ss_pred EEecccCCCC--ccccc--------cccHHHHHHHHHHc---------CCeEECCCCeEEEecCeEEEEEcCCCCCCCCc
Confidence 9999998422 12222 23467777777753 222221122223346788999999873
Q ss_pred CCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCC--chHH-------HHHHHh------hcCC-CChHHHH
Q 002337 535 GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTG--SEEF-------VKDIIG------QTSG-FMPRDLH 598 (934)
Q Consensus 535 ~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~--~~~~-------L~~la~------~t~G-fv~~DL~ 598 (934)
.|++++.|+|. .+.++.|+.+....|+..+++......+++. .+.. ...+.. +.|- |+.+|+.
T Consensus 1439 ~l~~Rf~r~F~-vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLs 1517 (3245)
T 3vkg_A 1439 QLTHRFLRHAP-ILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELS 1517 (3245)
T ss_dssp CCCHHHHTTCC-EEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHH
T ss_pred cCCHHHHhhce-EEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHH
Confidence 49999999996 7999999999999998766543211111111 0111 111111 1122 7899999
Q ss_pred HHHHHHHH-------------------HHHHhhcccccCCCCC-chhh-hh--------hhhccCcch-----------h
Q 002337 599 ALVADAGA-------------------NLIRKSNSEVDKNEPG-ESDL-TA--------KVAHNDNSS-----------I 638 (934)
Q Consensus 599 ~L~~~A~~-------------------~ai~r~~~~~~~~~~~-~~~l-~~--------~~~~~~~~~-----------~ 638 (934)
.+++--.. ++.|-.. |+.... +..+ .. .+....... .
T Consensus 1518 rv~qGll~~~~~~~~~~~~~lvrLW~HE~~RVF~---DRLv~~~Dr~~f~~~l~~~~~~~F~~~~~~~~~~pllf~~f~~ 1594 (3245)
T 3vkg_A 1518 RWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQ---DRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILYSNWLT 1594 (3245)
T ss_dssp HHHHHHHHHHHTSSCCCTTHHHHHHHHHHHHHHT---TTCSSHHHHHHHHHHHHHHHHHHCTTSCGGGGCSSCCCCSSCC
T ss_pred HHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHhcCcchhhhcccCcchhhhcc
Confidence 88753221 1111110 010000 0000 00 000000000 0
Q ss_pred hhhhcCCHHHHHHHHHhhhcccccccCCCCCcc-chhHH------hhc-CCCCCCcceecCCCCCcchHHHHHHHHHcCC
Q 002337 639 AATQVMGKEDLVKAMERSKKRNASALGAPKLPL-LHKDL------FSS-GLRKRSGVLLYGPPGTGKTLLAKAVATECSL 710 (934)
Q Consensus 639 ~~~~~i~~ed~~~aL~~~k~~~~~~i~~pk~pl-~~~~~------~~~-~~~~~~~iLl~GppGtGKT~lakalA~~~~~ 710 (934)
.....+..+++..-++..-..+...- ..+++ .+.+. ..+ -..|+.+.||.|..|+||++++|..|..++.
T Consensus 1595 ~~Y~~v~~~~l~~~l~~~L~~yn~~~--~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~ 1672 (3245)
T 3vkg_A 1595 KDYQPVNRSDLREYVKARLKVFYEEE--LDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGL 1672 (3245)
T ss_dssp ----CCCHHHHHHHHHHHHHTTC--------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred ccCccCCHHHHHHHHHHHHHHHHhcc--cCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHhCC
Confidence 00112234444443333222221110 11111 11111 222 2356789999999999999999999999999
Q ss_pred cEEEecCcccccccc-chhhhhhHHHHHHHH-hCCCcEEEecccc
Q 002337 711 NFLSVKGPELINMYI-GESEKNVRDIFQKAR-SARPCVIFFDELD 753 (934)
Q Consensus 711 ~~i~v~~~~l~~~~~-Gese~~v~~lf~~A~-~~~p~vlfiDEid 753 (934)
.++.+..+ ..|- .+-...++.++.+|- ...|.+++|+|-.
T Consensus 1673 ~vfqi~i~---k~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1714 (3245)
T 3vkg_A 1673 SIYTIKVN---NNYKSSDFDDDLRMLLKRAGCKEEKICFIFDESN 1714 (3245)
T ss_dssp EEECCC-------CCHHHHHHHHHHHHHHHHTSCCCEEEEEEGGG
T ss_pred eeEEEeee---CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 99988743 2332 234566889999885 4678888888753
No 130
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.26 E-value=1e-10 Score=121.81 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=109.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEEecCccccccccchHHHHHHHHHHhh
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEYSCHNLMASSERKTSAALAQAFNTAQ 453 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~------------------------~~~I~~~~L~~~~~g~~e~~L~~~f~~A~ 453 (934)
..++|+||+|+|||++++.++++++.. ++.++.. .......++.++..+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 119 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA------SRTKVEDTRDLLDNVQ 119 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETT------CGGGHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCc------ccccHHHHHHHHHHhh
Confidence 469999999999999999999988532 2222221 1123344556665543
Q ss_pred ----cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEe
Q 002337 454 ----SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAA 529 (934)
Q Consensus 454 ----~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIat 529 (934)
...+.+++|||+|.+.. +....|..+++. ....+.+|++
T Consensus 120 ~~~~~~~~~vlviDe~~~l~~----------------~~~~~l~~~l~~---------------------~~~~~~~i~~ 162 (250)
T 1njg_A 120 YAPARGRFKVYLIDEVHMLSR----------------HSFNALLKTLEE---------------------PPEHVKFLLA 162 (250)
T ss_dssp CSCSSSSSEEEEEETGGGSCH----------------HHHHHHHHHHHS---------------------CCTTEEEEEE
T ss_pred hchhcCCceEEEEECcccccH----------------HHHHHHHHHHhc---------------------CCCceEEEEE
Confidence 23579999999997643 122222222211 1456788899
Q ss_pred cCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHH
Q 002337 530 ADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 530 Tn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A 604 (934)
|+.+..+++.+++|+ ..+.+++|+.++..++++.++..... .. ....++.++..+.| .++.+..+++.+
T Consensus 163 t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~---~~-~~~~~~~l~~~~~G-~~~~~~~~~~~~ 231 (250)
T 1njg_A 163 TTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHI---AH-EPRALQLLARAAEG-SLRDALSLTDQA 231 (250)
T ss_dssp ESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTC---CB-CHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred eCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCC---CC-CHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 999888999999886 58999999999999999988754321 12 24557788888877 777888887765
No 131
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=6.4e-11 Score=132.05 Aligned_cols=161 Identities=21% Similarity=0.165 Sum_probs=105.1
Q ss_pred CcceecCCCCCcchHHHHHHHHHcC------CcEEEecCccccccccchhhhhhHHHHHHHH----------------hC
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECS------LNFLSVKGPELINMYIGESEKNVRDIFQKAR----------------SA 742 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~------~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~----------------~~ 742 (934)
.+++|+||||||||++|+++++.++ ..++.+++++..+ ...+++.+.... ..
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCP 132 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCC
Confidence 4599999999999999999998753 4688888766421 112222222111 12
Q ss_pred CCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCC
Q 002337 743 RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNS 822 (934)
Q Consensus 743 ~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp 822 (934)
.+.||||||+|.+.+. ..+.|+..|+.. ..++.+|.+||.++.+++++++ |+. .+.++ |+
T Consensus 133 ~~~vliiDE~~~l~~~-------------~~~~Ll~~le~~---~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~-~~ 192 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-------------AQSALRRTMETY---SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFK-AL 192 (353)
T ss_dssp SCEEEEETTGGGSCHH-------------HHHHHHHHHHHT---TTTEEEEEEESCGGGSCHHHHH--HSE-EEECC-CC
T ss_pred CceEEEEECCCccCHH-------------HHHHHHHHHHhc---CCCceEEEEeCchhhCcchhhc--cCc-eEEeC-CC
Confidence 4569999999998532 234455555543 2346667788999999999999 886 77787 47
Q ss_pred CHHHHHHHHHHHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHH
Q 002337 823 DVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADAWFHA 873 (934)
Q Consensus 823 ~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~A~~~A 873 (934)
+.++...+++...++..+. .+..+..+++.+ .| +.+.+.++++.++..+
T Consensus 193 ~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~-~G-~~r~~~~~l~~~~~~~ 242 (353)
T 1sxj_D 193 DASNAIDRLRFISEQENVKCDDGVLERILDIS-AG-DLRRGITLLQSASKGA 242 (353)
T ss_dssp CHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHT-SS-CHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CC-CHHHHHHHHHHHHHhc
Confidence 7888888888777654432 222366777773 44 3445555555555443
No 132
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=1.5e-10 Score=130.67 Aligned_cols=194 Identities=14% Similarity=0.213 Sum_probs=121.8
Q ss_pred CCCcCCchHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHh-----------CCcEEEEecCccc
Q 002337 366 NDFVPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL-----------GIHVVEYSCHNLM 434 (934)
Q Consensus 366 ~~~~~~~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~el-----------g~~~~~I~~~~L~ 434 (934)
....+.. +..+.+...+...... ..+.+++|+||||||||++++++++++ +..++.++|....
T Consensus 20 ~~l~gr~-~~~~~l~~~l~~~~~~-----~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 93 (384)
T 2qby_B 20 KEIPFRE-DILRDAAIAIRYFVKN-----EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVG 93 (384)
T ss_dssp SSCTTCH-HHHHHHHHHHHHHHTT-----CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHC
T ss_pred CCCCChH-HHHHHHHHHHHHHHcC-----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCC
Confidence 3344444 3445555555443332 334579999999999999999999998 8999999987543
Q ss_pred -ccc-----------------ccc-hHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHh
Q 002337 435 -ASS-----------------ERK-TSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREF 495 (934)
Q Consensus 435 -~~~-----------------~g~-~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~l 495 (934)
... .+. ....+..++..+.... .+|+|||+|.+.... . .++ ++..+
T Consensus 94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~-----------~-~~~--~l~~l 158 (384)
T 2qby_B 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRR-----------G-GDI--VLYQL 158 (384)
T ss_dssp SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHST-----------T-SHH--HHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCC-----------C-Cce--eHHHH
Confidence 100 011 1233445555554443 499999999886511 0 111 12222
Q ss_pred cCCCccccccccCCCCchhhhhhhhcccEEEEEecCCC---CCCChhhhcccceEEEcCCCCHHHHHHHHHHhccc-ccc
Q 002337 496 TEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS---EGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQP-VSE 571 (934)
Q Consensus 496 l~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~---~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~-~~~ 571 (934)
... ..++.+|++||.. ..+++.+++||...+.+++|+.++..+|++..+.. ...
T Consensus 159 ~~~----------------------~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~ 216 (384)
T 2qby_B 159 LRS----------------------DANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIK 216 (384)
T ss_dssp HTS----------------------SSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCT
T ss_pred hcC----------------------CcceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhccc
Confidence 210 1578899999887 67899999998779999999999999999987752 111
Q ss_pred ccCCCCchHHHHHHHhhcCCC--ChHHHHHHHHHHH
Q 002337 572 LTSDTGSEEFVKDIIGQTSGF--MPRDLHALVADAG 605 (934)
Q Consensus 572 l~~d~~~~~~L~~la~~t~Gf--v~~DL~~L~~~A~ 605 (934)
..-.+..++.++..+.+. ..+.+..+++.|.
T Consensus 217 ---~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~ 249 (384)
T 2qby_B 217 ---GTYDDEILSYIAAISAKEHGDARKAVNLLFRAA 249 (384)
T ss_dssp ---TSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ---CCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 111234456666666522 2233444555553
No 133
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.23 E-value=3.9e-11 Score=133.21 Aligned_cols=140 Identities=16% Similarity=0.251 Sum_probs=90.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCc------cccccccchHHHHHHHHHHhhcCC---CEEEEEcchhhc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHN------LMASSERKTSAALAQAFNTAQSYS---PTILLLRDFDVF 468 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~------L~~~~~g~~e~~L~~~f~~A~~~~---P~IL~IDEID~L 468 (934)
.++||+||||||||++++++|+.++.+++.++|.. +.+....... ...+ ..... .+++||||+|.+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~---~~~~--~~~~g~l~~~vl~iDEi~~~ 121 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQH---KGNF--EVKKGPVFSNFILADEVNRS 121 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETT---TTEE--EEEECTTCSSEEEEETGGGS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCC---CCce--EeccCcccccEEEEEccccC
Confidence 46999999999999999999999999999999842 1111100000 0000 00111 379999999976
Q ss_pred cccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-----CCChhhhcc
Q 002337 469 RNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----GLPPTIRRC 543 (934)
Q Consensus 469 ~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~-----~Ld~aLrrr 543 (934)
.+ .....|.+.++... ............++++|+|+|..+ .+++++++|
T Consensus 122 ~~----------------~~~~~Ll~~l~~~~----------~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~R 175 (331)
T 2r44_A 122 PA----------------KVQSALLECMQEKQ----------VTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDR 175 (331)
T ss_dssp CH----------------HHHHHHHHHHHHSE----------EEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTT
T ss_pred CH----------------HHHHHHHHHHhcCc----------eeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhh
Confidence 54 22223333322110 000000011245678888888543 389999999
Q ss_pred cceEEEcCCCCHHHHHHHHHHhccc
Q 002337 544 FSHEISMGPLTEQQRVEMLSQLLQP 568 (934)
Q Consensus 544 F~~eI~i~~Pde~~R~~IL~~ll~~ 568 (934)
|...+.++.|+.++|.+|++..+..
T Consensus 176 f~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 176 FMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred eeEEEEcCCCCHHHHHHHHHhcccc
Confidence 9888999999999999999987754
No 134
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.22 E-value=1.8e-11 Score=134.64 Aligned_cols=170 Identities=19% Similarity=0.266 Sum_probs=101.7
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCcccccc-----ccc--------hhhhhhHHHHHHHHhCCCcE
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM-----YIG--------ESEKNVRDIFQKARSARPCV 746 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~-----~~G--------ese~~v~~lf~~A~~~~p~v 746 (934)
.+.++||+||||||||++|++++... +.+|+.++|+.+... .+| ... .....|..|. .++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a~---~g~ 99 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEAD---GGT 99 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHHT---TSE
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhcC---CCE
Confidence 35789999999999999999999865 578999998776431 122 211 2334566654 469
Q ss_pred EEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCc--------CCCCCEEEEEEcCCC-------CCCChhhhCCCC
Q 002337 747 IFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN--------DSSQDLFIIGASNRP-------DLIDPALLRPGR 811 (934)
Q Consensus 747 lfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~--------~~~~~v~vI~aTNrp-------~~lD~allrpGR 811 (934)
||||||+.+.. .+...|+..|+... ....++.||+|||++ ..+++.|.. |
T Consensus 100 L~LDEi~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--R 164 (304)
T 1ojl_A 100 LFLDEIGDISP-------------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--R 164 (304)
T ss_dssp EEEESCTTCCH-------------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--H
T ss_pred EEEeccccCCH-------------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--h
Confidence 99999999853 23344444444321 123468999999986 134455555 5
Q ss_pred cceeeeecCCCCHHHHH---HHHHHHHhcC----CC-CcCCC---HHHHHhhCCCCCCHHHHHHHHHHHHHHH
Q 002337 812 FDKLLYVGVNSDVSYRE---RVLKALTRKF----KL-LEDVS---LYSIAKKCPPNFTGADMYALCADAWFHA 873 (934)
Q Consensus 812 fd~~i~v~~Pp~~~~r~---~Il~~~~~~~----~~-~~~~~---l~~la~~~t~g~sgaDl~~l~~~A~~~A 873 (934)
|. .+.+.+||-.+.++ .+++.+++++ .. ...++ +..+... .-.-+.++|.+++..|+..+
T Consensus 165 l~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~-~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 165 LN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY-DWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC-CCSSHHHHHHHHHHHHHHHC
T ss_pred cC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC-CCCCCHHHHHHHHHHHHHhC
Confidence 54 55566666554333 3444444332 21 11233 3344443 11224478888888877654
No 135
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.21 E-value=1.7e-10 Score=130.59 Aligned_cols=212 Identities=18% Similarity=0.244 Sum_probs=117.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcccc-ccccch-HHHHHHHHHHhh----cCCCEEEEEcchhhcc
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMA-SSERKT-SAALAQAFNTAQ----SYSPTILLLRDFDVFR 469 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~-~~~g~~-e~~L~~~f~~A~----~~~P~IL~IDEID~L~ 469 (934)
.+.++||+||||||||++|+++|+.++.+++.++|..+.. .+.+.. ...+...+..+. ...++++||||+|.+.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 150 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS 150 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHh
Confidence 4567999999999999999999999999999999988753 233332 344555555432 2357999999999988
Q ss_pred ccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCc-hhhhhhhhcccEEEEEecCC----------------
Q 002337 470 NLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFP-VKEIEKICRQQVLLVAAADS---------------- 532 (934)
Q Consensus 470 ~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~-~~~~~~~~~~~ViVIatTn~---------------- 532 (934)
..+.......+ .....+...|..+++.... .....++... ..........++++|+++|.
T Consensus 151 ~~~~~~~~~~~--~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~ 227 (376)
T 1um8_A 151 RLSENRSITRD--VSGEGVQQALLKIVEGSLV-NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVL 227 (376)
T ss_dssp ---------------CHHHHHHHHHHHHCCEE-C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCC
T ss_pred hhcCCCceecc--cchHHHHHHHHHHhhccce-ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhccccc
Confidence 64221110111 1112244444454432100 0000000000 00001122356678887762
Q ss_pred -------------------------CCCCChhhhcccceEEEcCCCCHHHHHHHHHH----hccccc------cccCCCC
Q 002337 533 -------------------------SEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQ----LLQPVS------ELTSDTG 577 (934)
Q Consensus 533 -------------------------~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~----ll~~~~------~l~~d~~ 577 (934)
...+.|++.+|++..+.+++++.++..+|+.. +++... ......
T Consensus 228 g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~- 306 (376)
T 1um8_A 228 GFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIF- 306 (376)
T ss_dssp SCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEE-
T ss_pred CCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEE-
Confidence 11367888889988999999999999999873 211100 000011
Q ss_pred chHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHHh
Q 002337 578 SEEFVKDIIGQTS--GFMPRDLHALVADAGANLIRK 611 (934)
Q Consensus 578 ~~~~L~~la~~t~--Gfv~~DL~~L~~~A~~~ai~r 611 (934)
.+..++.++.... ....+.+..++..+...++.+
T Consensus 307 ~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~ 342 (376)
T 1um8_A 307 EEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFD 342 (376)
T ss_dssp CHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhh
Confidence 2444566666532 356788888888877666543
No 136
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.21 E-value=1e-10 Score=128.25 Aligned_cols=155 Identities=20% Similarity=0.180 Sum_probs=106.3
Q ss_pred cceecCCCCCcchHHHHHHHHHc-----CCcEEEecCccccccccchhhhhhHHHHHHHH------hCCCcEEEeccccc
Q 002337 686 GVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESEKNVRDIFQKAR------SARPCVIFFDELDS 754 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~------~~~p~vlfiDEid~ 754 (934)
+++|+||||||||++|+++++.+ +.+++.+++++..+ ...+++.+.... ...+.||+|||+|.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 113 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADA 113 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGG
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCc
Confidence 59999999999999999999885 34678888766422 122333333222 24578999999999
Q ss_pred cccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHH
Q 002337 755 LAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKAL 834 (934)
Q Consensus 755 l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~ 834 (934)
+.. ...+.|+..++.. ..++.+|++||.++.+++++.+ |+. .+.++ |++.++...+++..
T Consensus 114 l~~-------------~~~~~L~~~le~~---~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~-~~~~~~~~~~l~~~ 173 (319)
T 2chq_A 114 LTA-------------DAQAALRRTMEMY---SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFK-PVPKEAMKKRLLEI 173 (319)
T ss_dssp SCH-------------HHHHTTGGGTSSS---SSSEEEEEEESCGGGSCHHHHT--TCE-EEECC-CCCHHHHHHHHHHH
T ss_pred CCH-------------HHHHHHHHHHHhc---CCCCeEEEEeCChhhcchHHHh--hCe-EEEec-CCCHHHHHHHHHHH
Confidence 852 3456677777654 3568888899999999999999 886 78888 47788889999888
Q ss_pred HhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHH
Q 002337 835 TRKFKLLED-VSLYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 835 ~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
.++.+..-+ ..+..++..+ .| +-+.+.++++.
T Consensus 174 ~~~~~~~i~~~~l~~l~~~~-~G-~~r~~~~~l~~ 206 (319)
T 2chq_A 174 CEKEGVKITEDGLEALIYIS-GG-DFRKAINALQG 206 (319)
T ss_dssp HHTTCCCBCHHHHHHHHHTT-TT-CHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHc-CC-CHHHHHHHHHH
Confidence 876554322 2355666552 32 33344444443
No 137
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.21 E-value=2.5e-11 Score=130.36 Aligned_cols=170 Identities=18% Similarity=0.162 Sum_probs=99.5
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcC---CcEEEecCcccccc-----ccchhh-------hhhHHHHHHHHhCCCcEEE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECS---LNFLSVKGPELINM-----YIGESE-------KNVRDIFQKARSARPCVIF 748 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~---~~~i~v~~~~l~~~-----~~Gese-------~~v~~lf~~A~~~~p~vlf 748 (934)
+.+++|+||||||||++|++++.... .+|+.++++++... ..|... ......|..+ ..++||
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~ 105 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLF 105 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHT---TTSEEE
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhc---CCcEEE
Confidence 47899999999999999999998874 68999998876321 112110 0012234433 357999
Q ss_pred eccccccccCCCCCCCCchhHHHHHHhhhhhccCC--------cCCCCCEEEEEEcCCC-------CCCChhhhCCCCcc
Q 002337 749 FDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGL--------NDSSQDLFIIGASNRP-------DLIDPALLRPGRFD 813 (934)
Q Consensus 749 iDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~--------~~~~~~v~vI~aTNrp-------~~lD~allrpGRfd 813 (934)
|||+|.+.+ .+...|+..|+.. .....++.+|+|||.+ ..++++|.+ ||+
T Consensus 106 lDEi~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~ 170 (265)
T 2bjv_A 106 LDELATAPM-------------MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALA 170 (265)
T ss_dssp EESGGGSCH-------------HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHC
T ss_pred EechHhcCH-------------HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhc
Confidence 999999853 2233344333311 1112467899999985 247788888 886
Q ss_pred eeeeecCCCCHH---HHHHHHHHHHhc----CCCC--cCCCH---HHHHhhCCCCCCHHHHHHHHHHHHHHH
Q 002337 814 KLLYVGVNSDVS---YRERVLKALTRK----FKLL--EDVSL---YSIAKKCPPNFTGADMYALCADAWFHA 873 (934)
Q Consensus 814 ~~i~v~~Pp~~~---~r~~Il~~~~~~----~~~~--~~~~l---~~la~~~t~g~sgaDl~~l~~~A~~~A 873 (934)
. +.+.+||-.+ ....+++.++++ .... ..++- ..+... .-..+.++|.++++.|...+
T Consensus 171 ~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~-~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 171 F-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNY-RWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp S-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHS-CCTTHHHHHHHHHHHHHHHH
T ss_pred C-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhC
Confidence 4 4455545443 233333333332 3221 12332 333333 11234468888888876554
No 138
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.20 E-value=5.4e-10 Score=124.44 Aligned_cols=180 Identities=21% Similarity=0.228 Sum_probs=113.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCC
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNES 476 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~ 476 (934)
..+++|+||||||||||++++|++++.++...+++.+.. ...+...+... ..+.|+||||++.+.+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~~~--~~~~v~~iDE~~~l~~------ 116 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTSL--ERGDVLFIDEIHRLNK------ 116 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHHC--CTTCEEEEETGGGCCH------
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHHHc--cCCCEEEEcchhhcCH------
Confidence 356999999999999999999999999887777654322 12233333322 2468999999998754
Q ss_pred CCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHH
Q 002337 477 LPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQ 556 (934)
Q Consensus 477 ~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~ 556 (934)
.+.+.+...++.....-.. ..+. ..... ...-..+.++++|+.+..+++++++||...+.+++++.+
T Consensus 117 ----------~~~e~L~~~~~~~~~~i~~-~~~~-~~~~i-~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~ 183 (334)
T 1in4_A 117 ----------AVEELLYSAIEDFQIDIMI-GKGP-SAKSI-RIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVK 183 (334)
T ss_dssp ----------HHHHHHHHHHHTSCCCC------------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHH
T ss_pred ----------HHHHHHHHHHHhcccceee-ccCc-ccccc-cccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHH
Confidence 1122222222110000000 0000 00000 011235778889999999999999999878999999999
Q ss_pred HHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 002337 557 QRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANL 608 (934)
Q Consensus 557 ~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~a 608 (934)
++.+|++...+.... ..+ +..+..++.++.|. ++++..+++.+...+
T Consensus 184 ~l~~iL~~~~~~~~~---~~~-~~~~~~ia~~~~G~-~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 184 ELKEIIKRAASLMDV---EIE-DAAAEMIAKRSRGT-PRIAIRLTKRVRDML 230 (334)
T ss_dssp HHHHHHHHHHHHTTC---CBC-HHHHHHHHHTSTTC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC---CcC-HHHHHHHHHhcCCC-hHHHHHHHHHHHHHH
Confidence 999999987653221 222 45578888888774 477777777665444
No 139
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.20 E-value=3.8e-10 Score=126.76 Aligned_cols=200 Identities=18% Similarity=0.288 Sum_probs=120.9
Q ss_pred CcCCchHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHh------CCcEEEEecCccccc-----
Q 002337 368 FVPLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL------GIHVVEYSCHNLMAS----- 436 (934)
Q Consensus 368 ~~~~~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~el------g~~~~~I~~~~L~~~----- 436 (934)
..+.. +..+.+...+...+. ...+..++|+||+|||||++++++++.+ +..++.++|......
T Consensus 22 ~~gr~-~e~~~l~~~l~~~~~-----~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 22 LPHRE-DQIRKIASILAPLYR-----EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CTTCH-HHHHHHHHSSGGGGG-----TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCChH-HHHHHHHHHHHHHHc-----CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 44443 344455554443322 1345579999999999999999999998 888999998643210
Q ss_pred -----------cccc-hHHHHHHHHHHhhcC-CCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCcccc
Q 002337 437 -----------SERK-TSAALAQAFNTAQSY-SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDE 503 (934)
Q Consensus 437 -----------~~g~-~e~~L~~~f~~A~~~-~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~ 503 (934)
..+. ....+..++...... .|.+|+|||++.+....+ ...+..++ +..+.
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-----------~~~l~~l~-~~~~~----- 158 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-----------DDILYKLS-RINSE----- 158 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-----------STHHHHHH-HHHHS-----
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-----------CHHHHHHh-hchhh-----
Confidence 0111 222344444444433 389999999998875210 01122222 22110
Q ss_pred ccccCCCCchhhhhhhhcccEEEEEecCCC---CCCChhhhcccc-eEEEcCCCCHHHHHHHHHHhccccccccCCCCch
Q 002337 504 DEESHGYFPVKEIEKICRQQVLLVAAADSS---EGLPPTIRRCFS-HEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSE 579 (934)
Q Consensus 504 ~~~~~g~~~~~~~~~~~~~~ViVIatTn~~---~~Ld~aLrrrF~-~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~ 579 (934)
....++.+|++|+.+ ..+++.+++||. +.+.+++++.++..++++..+.... .......
T Consensus 159 ---------------~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~--~~~~~~~ 221 (386)
T 2qby_A 159 ---------------VNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF--KPGVLPD 221 (386)
T ss_dssp ---------------CCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB--CSSCSCH
T ss_pred ---------------cCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc--cCCCCCH
Confidence 014578889999877 457888888875 4899999999999999998764211 0111224
Q ss_pred HHHHHHHhhcC---CCChHHHHHHHHHHHHHH
Q 002337 580 EFVKDIIGQTS---GFMPRDLHALVADAGANL 608 (934)
Q Consensus 580 ~~L~~la~~t~---Gfv~~DL~~L~~~A~~~a 608 (934)
..++.++..+. | .++.+..+++.+...+
T Consensus 222 ~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 222 NVIKLCAALAAREHG-DARRALDLLRVSGEIA 252 (386)
T ss_dssp HHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 44556666555 4 3445556777665444
No 140
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.19 E-value=1.2e-10 Score=137.32 Aligned_cols=163 Identities=16% Similarity=0.254 Sum_probs=102.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchH-------HHHHHHHHHh-----hcCCCEEEEEc
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTS-------AALAQAFNTA-----QSYSPTILLLR 463 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e-------~~L~~~f~~A-----~~~~P~IL~ID 463 (934)
...++||+||||||||++|+++|++++..+++++|+++......... ..+...|..+ ....+.+||||
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 45789999999999999999999999999999999876543211000 0012222222 22468999999
Q ss_pred chhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcc
Q 002337 464 DFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRC 543 (934)
Q Consensus 464 EID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrr 543 (934)
|+|.+... + .+ ....|..+++ ....++++|+++.....++ .++++
T Consensus 156 Eid~l~~~--------~-~~----~l~~L~~~l~---------------------~~~~~iIli~~~~~~~~l~-~l~~r 200 (516)
T 1sxj_A 156 EVDGMSGG--------D-RG----GVGQLAQFCR---------------------KTSTPLILICNERNLPKMR-PFDRV 200 (516)
T ss_dssp SGGGCCTT--------S-TT----HHHHHHHHHH---------------------HCSSCEEEEESCTTSSTTG-GGTTT
T ss_pred CCCccchh--------h-HH----HHHHHHHHHH---------------------hcCCCEEEEEcCCCCccch-hhHhc
Confidence 99988651 1 11 1222223321 1144566666654444454 35544
Q ss_pred cceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHH
Q 002337 544 FSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVA 602 (934)
Q Consensus 544 F~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~ 602 (934)
+ ..+.+++|+.+++.++++..+..... ..+ +..++.++..+.| |++.++.
T Consensus 201 ~-~~i~f~~~~~~~~~~~L~~i~~~~~~---~i~-~~~l~~la~~s~G----diR~~i~ 250 (516)
T 1sxj_A 201 C-LDIQFRRPDANSIKSRLMTIAIREKF---KLD-PNVIDRLIQTTRG----DIRQVIN 250 (516)
T ss_dssp S-EEEECCCCCHHHHHHHHHHHHHHHTC---CCC-TTHHHHHHHHTTT----CHHHHHH
T ss_pred e-EEEEeCCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC----cHHHHHH
Confidence 4 48999999999999999877654322 122 2346778877654 5554444
No 141
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.18 E-value=9.4e-10 Score=124.06 Aligned_cols=176 Identities=17% Similarity=0.152 Sum_probs=114.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh----CCcEEEEecCcccccc----------------ccc-hHHHHHHHHHHhh-cCC
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRL----GIHVVEYSCHNLMASS----------------ERK-TSAALAQAFNTAQ-SYS 456 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~el----g~~~~~I~~~~L~~~~----------------~g~-~e~~L~~~f~~A~-~~~ 456 (934)
+++|+||||||||++++++++.+ +..++.++|....... .+. ....+..+..... ...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 79999999999999999999999 6788999987543210 011 1122222222222 235
Q ss_pred CEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCC---
Q 002337 457 PTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS--- 533 (934)
Q Consensus 457 P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~--- 533 (934)
|.+|+|||++.+.. .....|.+++... ......++.+|++||.+
T Consensus 126 ~~vlilDE~~~l~~----------------~~~~~L~~~~~~~-----------------~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 126 YMFLVLDDAFNLAP----------------DILSTFIRLGQEA-----------------DKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp CEEEEEETGGGSCH----------------HHHHHHHHHTTCH-----------------HHHSSCCEEEEEEESSTHHH
T ss_pred eEEEEEECccccch----------------HHHHHHHHHHHhC-----------------CCCCcCCEEEEEEECCchHH
Confidence 89999999997622 3344444443210 00001578889999887
Q ss_pred CCCChhhhcccce-EEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC--------CChHHHHHHHHHH
Q 002337 534 EGLPPTIRRCFSH-EISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG--------FMPRDLHALVADA 604 (934)
Q Consensus 534 ~~Ld~aLrrrF~~-eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G--------fv~~DL~~L~~~A 604 (934)
..+++.+.+||.. .+.+++++.++..++++..+.... ....-.+..++.++..+.+ -.++.+..+++.|
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL--AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB--CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 6688888888765 899999999999999988775311 0112235567778888842 2456667777776
Q ss_pred HHHHH
Q 002337 605 GANLI 609 (934)
Q Consensus 605 ~~~ai 609 (934)
...+.
T Consensus 251 ~~~a~ 255 (389)
T 1fnn_A 251 AYAAQ 255 (389)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 142
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.18 E-value=2.7e-10 Score=126.94 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=37.5
Q ss_pred ccEEEEEecCCCC-CCChhhhcccceEEEcCCC-CHHHHHHHHHHh
Q 002337 522 QQVLLVAAADSSE-GLPPTIRRCFSHEISMGPL-TEQQRVEMLSQL 565 (934)
Q Consensus 522 ~~ViVIatTn~~~-~Ld~aLrrrF~~eI~i~~P-de~~R~~IL~~l 565 (934)
.++++|+|||... .+++++++||...+.++.| +.++|.+|++..
T Consensus 186 ~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 186 ARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp CCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHH
T ss_pred CceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHH
Confidence 4789999999754 7999999999888999999 677888888764
No 143
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.17 E-value=1.1e-11 Score=121.08 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=72.6
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCC
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR 759 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r 759 (934)
.+.+++|+||||||||++|++++... +.+|+ +++..+... ......|..|. .++|||||+|.+.+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a~---~g~l~ldei~~l~~-- 90 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALAQ---GGTLVLSHPEHLTR-- 90 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHHT---TSCEEEECGGGSCH--
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHcC---CcEEEEcChHHCCH--
Confidence 35789999999999999999999876 67899 999876543 34455666663 46999999999852
Q ss_pred CCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcce
Q 002337 760 GASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDK 814 (934)
Q Consensus 760 ~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~ 814 (934)
.....|+..|... ..++.+|+|||++- .++...|+|+.
T Consensus 91 -----------~~q~~Ll~~l~~~---~~~~~~I~~t~~~~---~~~~~~~~~~~ 128 (145)
T 3n70_A 91 -----------EQQYHLVQLQSQE---HRPFRLIGIGDTSL---VELAASNHIIA 128 (145)
T ss_dssp -----------HHHHHHHHHHHSS---SCSSCEEEEESSCH---HHHHHHSCCCH
T ss_pred -----------HHHHHHHHHHhhc---CCCEEEEEECCcCH---HHHHHcCCCCH
Confidence 2344455555332 34678999999852 23444455544
No 144
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.16 E-value=1.3e-10 Score=127.78 Aligned_cols=156 Identities=16% Similarity=0.148 Sum_probs=106.4
Q ss_pred cceecCCCCCcchHHHHHHHHHc-----CCcEEEecCccccccccchhhhhhHHHHHHHH-------hCCCcEEEecccc
Q 002337 686 GVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINMYIGESEKNVRDIFQKAR-------SARPCVIFFDELD 753 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~-------~~~p~vlfiDEid 753 (934)
+++|+||+|+|||++|+++++.+ +.+++.+++++.. + ...++++++... ...+.||+|||+|
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~----~--~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~ 117 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR----G--IDVVRNQIKHFAQKKLHLPPGKHKIVILDEAD 117 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC----S--HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc----C--hHHHHHHHHHHHhccccCCCCCceEEEEECcc
Confidence 49999999999999999999885 4568888876532 1 244556665544 3347899999999
Q ss_pred ccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHH
Q 002337 754 SLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKA 833 (934)
Q Consensus 754 ~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~ 833 (934)
.+.. ...+.|+..++.. ..++.+|.+||.++.+++++.+ |+. .+.++ |++.++..++++.
T Consensus 118 ~l~~-------------~~~~~L~~~le~~---~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~-~~~~~~~~~~l~~ 177 (323)
T 1sxj_B 118 SMTA-------------GAQQALRRTMELY---SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYS-KLSDEDVLKRLLQ 177 (323)
T ss_dssp GSCH-------------HHHHTTHHHHHHT---TTTEEEEEEESCGGGSCHHHHT--TSE-EEECC-CCCHHHHHHHHHH
T ss_pred cCCH-------------HHHHHHHHHHhcc---CCCceEEEEeCChhhchhHHHh--hce-EEeec-CCCHHHHHHHHHH
Confidence 9852 2234455555432 3457778888999999999998 876 78888 5788889999988
Q ss_pred HHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHHHH
Q 002337 834 LTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCADA 869 (934)
Q Consensus 834 ~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~~A 869 (934)
..++.++. .+..+..+++.+ .| +.+.+.++++.+
T Consensus 178 ~~~~~~~~~~~~~~~~l~~~~-~G-~~r~a~~~l~~~ 212 (323)
T 1sxj_B 178 IIKLEDVKYTNDGLEAIIFTA-EG-DMRQAINNLQST 212 (323)
T ss_dssp HHHHHTCCBCHHHHHHHHHHH-TT-CHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHc-CC-CHHHHHHHHHHH
Confidence 77654332 122356677763 33 333444444443
No 145
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.13 E-value=3.2e-11 Score=157.89 Aligned_cols=130 Identities=22% Similarity=0.304 Sum_probs=91.4
Q ss_pred CCCCccchhHHhh--c--CCCCCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccc----cc--------
Q 002337 666 APKLPLLHKDLFS--S--GLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMY----IG-------- 726 (934)
Q Consensus 666 ~pk~pl~~~~~~~--~--~~~~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~----~G-------- 726 (934)
.+.+|.-.+++.. . |+.++.-++++|+||+|||++|..+|..+ +.+++++++.+....+ .|
T Consensus 710 ~~~i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i 789 (2050)
T 3cmu_A 710 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLC 789 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEE
T ss_pred cceeecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEE
Confidence 3446666666543 2 79999999999999999999999998776 4469999987765554 23
Q ss_pred hhhhhhHHHHHHHHh----CCCcEEEecccccccc-CC--CCCCC-CchhHHHHHHhhhhhccCCcCCCCCEEEEEEc
Q 002337 727 ESEKNVRDIFQKARS----ARPCVIFFDELDSLAP-AR--GASGD-SGGVMDRVVSQMLAEIDGLNDSSQDLFIIGAS 796 (934)
Q Consensus 727 ese~~v~~lf~~A~~----~~p~vlfiDEid~l~~-~r--~~~~~-~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aT 796 (934)
.++.++.+++..++. ..|++|+||.+..+.+ .+ +..++ +.+...|.+++++..|..+.. ..++.||++.
T Consensus 790 ~~~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAk-e~~v~VI~l~ 866 (2050)
T 3cmu_A 790 SQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK-QSNTLLIFIN 866 (2050)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH-TTTCEEEEEE
T ss_pred ecCCCHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHH-HhCCEEEEec
Confidence 234457777777765 7899999999999986 22 11111 224556778888888887754 3455665543
No 146
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.12 E-value=1.3e-11 Score=120.24 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=67.0
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCC
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASG 763 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~ 763 (934)
+.+++|+||||||||++|++++.... +|+.+++.++...+ ...+|+.+. .++|||||+|.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a~---~~~l~lDei~~l~~~----- 90 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKAE---GGVLYVGDIAQYSRN----- 90 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHTT---TSEEEEEECTTCCHH-----
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhCC---CCeEEEeChHHCCHH-----
Confidence 56899999999999999999998887 99999998875443 456666654 469999999998532
Q ss_pred CCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCC
Q 002337 764 DSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRP 799 (934)
Q Consensus 764 ~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp 799 (934)
....|+..|+... ..++.+|+|||++
T Consensus 91 --------~q~~Ll~~l~~~~--~~~~~iI~~tn~~ 116 (143)
T 3co5_A 91 --------IQTGITFIIGKAE--RCRVRVIASCSYA 116 (143)
T ss_dssp --------HHHHHHHHHHHHT--TTTCEEEEEEEEC
T ss_pred --------HHHHHHHHHHhCC--CCCEEEEEecCCC
Confidence 2333444444321 3568899999976
No 147
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.08 E-value=6.9e-10 Score=124.64 Aligned_cols=159 Identities=18% Similarity=0.275 Sum_probs=109.8
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCc------------------------EEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLN------------------------FLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~------------------------~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+..++|+||+|||||++|+++++..+.. ++.+++.. ......++++++.+
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~ 111 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNV 111 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHH
Confidence 3468999999999999999999887532 22222211 01123467777776
Q ss_pred Hh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 RS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
.. ..+.||+|||+|.+.. ...+.|+..++.. ..++++|++||.++.+++++++ |+ ..
T Consensus 112 ~~~~~~~~~~vliiDe~~~l~~-------------~~~~~Ll~~le~~---~~~~~~Il~~~~~~~l~~~l~s--r~-~~ 172 (373)
T 1jr3_A 112 QYAPARGRFKVYLIDEVHMLSR-------------HSFNALLKTLEEP---PEHVKFLLATTDPQKLPVTILS--RC-LQ 172 (373)
T ss_dssp TSCCSSSSSEEEEEECGGGSCH-------------HHHHHHHHHHHSC---CSSEEEEEEESCGGGSCHHHHT--TS-EE
T ss_pred hhccccCCeEEEEEECcchhcH-------------HHHHHHHHHHhcC---CCceEEEEEeCChHhCcHHHHh--he-eE
Confidence 53 3468999999999841 2345566665543 3568888889999999999998 87 67
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCCcC-CCHHHHHhhCCCCCCHHHHHHHHHHHH
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLLED-VSLYSIAKKCPPNFTGADMYALCADAW 870 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~~t~g~sgaDl~~l~~~A~ 870 (934)
+.++ |++.++..++++..+++.++.-+ ..+..+++.+ .| +..++.+++..+.
T Consensus 173 i~~~-~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~-~G-~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 173 FHLK-ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA-EG-SLRDALSLTDQAI 225 (373)
T ss_dssp EECC-CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHS-SS-CHHHHHHHHHHHH
T ss_pred eeCC-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHC-CC-CHHHHHHHHHHHH
Confidence 8888 47888899999888776543222 2256677773 44 5677777777664
No 148
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.07 E-value=6.1e-10 Score=122.04 Aligned_cols=149 Identities=15% Similarity=0.225 Sum_probs=101.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHhh--cCCCEEEEEcchhhcccc
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTSAALAQAFNTAQ--SYSPTILLLRDFDVFRNL 471 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~el-----g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~--~~~P~IL~IDEID~L~~~ 471 (934)
++||+||+|||||++++++++.+ +.+++.+++++..+. ......+........ ...+.+++|||+|.+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~- 116 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA- 116 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-
Confidence 49999999999999999999997 345788888764321 111112222221111 13479999999998754
Q ss_pred ccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcC
Q 002337 472 VSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMG 551 (934)
Q Consensus 472 ~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~ 551 (934)
+....|.++++. ....+.+|++||.+..+.+++++|+. .+.++
T Consensus 117 ---------------~~~~~L~~~le~---------------------~~~~~~~i~~~~~~~~l~~~l~sr~~-~i~~~ 159 (319)
T 2chq_A 117 ---------------DAQAALRRTMEM---------------------YSKSCRFILSCNYVSRIIEPIQSRCA-VFRFK 159 (319)
T ss_dssp ---------------HHHHTTGGGTSS---------------------SSSSEEEEEEESCGGGSCHHHHTTCE-EEECC
T ss_pred ---------------HHHHHHHHHHHh---------------------cCCCCeEEEEeCChhhcchHHHhhCe-EEEec
Confidence 122223233321 14567889999999999999999986 89999
Q ss_pred CCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC
Q 002337 552 PLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (934)
Q Consensus 552 ~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G 591 (934)
+|+.+++.++++..++.... .. ....++.++..+.|
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~---~i-~~~~l~~l~~~~~G 195 (319)
T 2chq_A 160 PVPKEAMKKRLLEICEKEGV---KI-TEDGLEALIYISGG 195 (319)
T ss_dssp CCCHHHHHHHHHHHHHTTCC---CB-CHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHcCC
Confidence 99999999999988764322 22 24456777766654
No 149
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=1e-09 Score=122.22 Aligned_cols=157 Identities=14% Similarity=0.206 Sum_probs=103.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhC------CcEEEEecCccccccccchHHHHHHHHHHhh----------------cCC
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLG------IHVVEYSCHNLMASSERKTSAALAQAFNTAQ----------------SYS 456 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg------~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~----------------~~~ 456 (934)
++||+||||||||++++++|+.++ ..+..+++.+..+ ...+++.+.... ...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPP 133 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCC
Confidence 499999999999999999999864 4688888876422 122222211111 124
Q ss_pred CEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCC
Q 002337 457 PTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGL 536 (934)
Q Consensus 457 P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~L 536 (934)
+.+++|||+|.+.+ .....|.++++. ....+.+|.+||.+..+
T Consensus 134 ~~vliiDE~~~l~~----------------~~~~~Ll~~le~---------------------~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 134 YKIIILDEADSMTA----------------DAQSALRRTMET---------------------YSGVTRFCLICNYVTRI 176 (353)
T ss_dssp CEEEEETTGGGSCH----------------HHHHHHHHHHHH---------------------TTTTEEEEEEESCGGGS
T ss_pred ceEEEEECCCccCH----------------HHHHHHHHHHHh---------------------cCCCceEEEEeCchhhC
Confidence 57999999998764 112222233221 02345667788899999
Q ss_pred ChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHH
Q 002337 537 PPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 537 d~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A 604 (934)
.+++++|+. .+.+++|+.++...+++..+..... .. .+..++.++..+.|. .+.+..+++.+
T Consensus 177 ~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~---~i-~~~~l~~l~~~~~G~-~r~~~~~l~~~ 238 (353)
T 1sxj_D 177 IDPLASQCS-KFRFKALDASNAIDRLRFISEQENV---KC-DDGVLERILDISAGD-LRRGITLLQSA 238 (353)
T ss_dssp CHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTC---CC-CHHHHHHHHHHTSSC-HHHHHHHHHHT
T ss_pred cchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCC---CC-CHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 999999986 8999999999999999987754322 12 245677788877764 33334444433
No 150
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=1.1e-09 Score=120.17 Aligned_cols=146 Identities=17% Similarity=0.254 Sum_probs=101.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHhh-------cCCCEEEEEcchhh
Q 002337 400 VLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASSERKTSAALAQAFNTAQ-------SYSPTILLLRDFDV 467 (934)
Q Consensus 400 VLL~GppGtGKTtLaralA~el-----g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~-------~~~P~IL~IDEID~ 467 (934)
++|+||+|+|||++++++++.+ +..++.+++.+.. ....++..+.... ...+.+++|||+|.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~ 118 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADS 118 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECccc
Confidence 9999999999999999999996 3568888876532 2334444444332 22378999999998
Q ss_pred ccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceE
Q 002337 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHE 547 (934)
Q Consensus 468 L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~e 547 (934)
+.. .....|..+++ .....+.+|.+||.+..+.+.+++|+. .
T Consensus 119 l~~----------------~~~~~L~~~le---------------------~~~~~~~~il~~~~~~~l~~~l~sr~~-~ 160 (323)
T 1sxj_B 119 MTA----------------GAQQALRRTME---------------------LYSNSTRFAFACNQSNKIIEPLQSQCA-I 160 (323)
T ss_dssp SCH----------------HHHHTTHHHHH---------------------HTTTTEEEEEEESCGGGSCHHHHTTSE-E
T ss_pred CCH----------------HHHHHHHHHHh---------------------ccCCCceEEEEeCChhhchhHHHhhce-E
Confidence 754 11122222221 113557788888899999999999986 8
Q ss_pred EEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCC
Q 002337 548 ISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFM 593 (934)
Q Consensus 548 I~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv 593 (934)
+.+++|+.++..++++..++.... .. .+..++.++..+.|..
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~~---~~-~~~~~~~l~~~~~G~~ 202 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLEDV---KY-TNDGLEAIIFTAEGDM 202 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTC---CB-CHHHHHHHHHHHTTCH
T ss_pred EeecCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHcCCCH
Confidence 999999999999999987754321 12 2445677777776543
No 151
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=7.1e-10 Score=121.96 Aligned_cols=157 Identities=22% Similarity=0.234 Sum_probs=103.5
Q ss_pred CcceecCCCCCcchHHHHHHHHHcC-----CcEEEecCccccccccchhhhhhHHHHHHH-H-----hCCCcEEEecccc
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECS-----LNFLSVKGPELINMYIGESEKNVRDIFQKA-R-----SARPCVIFFDELD 753 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~-----~~~i~v~~~~l~~~~~Gese~~v~~lf~~A-~-----~~~p~vlfiDEid 753 (934)
.+++|+||||||||++|+++++.+. ..++.+++++..+ ...++..+... + ...+.+|+|||+|
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~ 120 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 120 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCC
Confidence 3599999999999999999998852 3477777655321 12223322221 1 1457899999999
Q ss_pred ccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHH
Q 002337 754 SLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKA 833 (934)
Q Consensus 754 ~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~ 833 (934)
.+.+ ...+.|+..|+.. ..++.+|++||.++.+++++.+ |+. .+.++ |++.++...+++.
T Consensus 121 ~l~~-------------~~~~~L~~~le~~---~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~-~l~~~~~~~~l~~ 180 (327)
T 1iqp_A 121 ALTQ-------------DAQQALRRTMEMF---SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFR-PLRDEDIAKRLRY 180 (327)
T ss_dssp GSCH-------------HHHHHHHHHHHHT---TTTEEEEEEESCGGGSCHHHHH--TEE-EEECC-CCCHHHHHHHHHH
T ss_pred cCCH-------------HHHHHHHHHHHhc---CCCCeEEEEeCCccccCHHHHh--hCc-EEEec-CCCHHHHHHHHHH
Confidence 9852 2344455555432 3467788899999999999998 887 67887 4778888888888
Q ss_pred HHhcCCCCc-CCCHHHHHhhCCCCCCHHHHHHHHHHH
Q 002337 834 LTRKFKLLE-DVSLYSIAKKCPPNFTGADMYALCADA 869 (934)
Q Consensus 834 ~~~~~~~~~-~~~l~~la~~~t~g~sgaDl~~l~~~A 869 (934)
..++.++.- +..+..++..+ .| +.+.+.++++.+
T Consensus 181 ~~~~~~~~~~~~~~~~l~~~~-~g-~~r~~~~~l~~~ 215 (327)
T 1iqp_A 181 IAENEGLELTEEGLQAILYIA-EG-DMRRAINILQAA 215 (327)
T ss_dssp HHHTTTCEECHHHHHHHHHHH-TT-CHHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHC-CC-CHHHHHHHHHHH
Confidence 877654321 22355666663 33 334444555443
No 152
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.04 E-value=3.4e-10 Score=132.28 Aligned_cols=142 Identities=12% Similarity=0.081 Sum_probs=81.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC--cEEEEecC-----ccccccccchHHHHHHHHHHhhcC---CCEEEEEcchh
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGI--HVVEYSCH-----NLMASSERKTSAALAQAFNTAQSY---SPTILLLRDFD 466 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~--~~~~I~~~-----~L~~~~~g~~e~~L~~~f~~A~~~---~P~IL~IDEID 466 (934)
+.+|||+||||||||++|+++|..++. ++..++|. ++++...+..... ...|..+... .++|+|||||+
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~ 119 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIW 119 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGG
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHh
Confidence 357999999999999999999998843 55555554 2222211111100 1222222211 46799999998
Q ss_pred hccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCC---CChhhhcc
Q 002337 467 VFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEG---LPPTIRRC 543 (934)
Q Consensus 467 ~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~---Ld~aLrrr 543 (934)
.+.+ .+...|.+.++.... . ..|. ......+ ++|+|||.... +.+++.+|
T Consensus 120 r~~~----------------~~q~~LL~~lee~~v---~-i~G~------~~~~~~~-~iI~ATN~lpe~~~~~~aLldR 172 (500)
T 3nbx_X 120 KAGP----------------AILNTLLTAINERQF---R-NGAH------VEKIPMR-LLVAASNELPEADSSLEALYDR 172 (500)
T ss_dssp GCCH----------------HHHHHHHHHHHSSEE---E-CSSS------EEECCCC-EEEEEESSCCCTTCTTHHHHTT
T ss_pred hhcH----------------HHHHHHHHHHHHHhc---c-CCCC------cCCcchh-hhhhccccCCCccccHHHHHHH
Confidence 6543 233333344332100 0 0110 0111223 46777775322 44689999
Q ss_pred cceEEEcCCCCH-HHHHHHHHHhc
Q 002337 544 FSHEISMGPLTE-QQRVEMLSQLL 566 (934)
Q Consensus 544 F~~eI~i~~Pde-~~R~~IL~~ll 566 (934)
|...+.++.|++ +++.+|++...
T Consensus 173 F~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 173 MLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCEEEECCSCCCHHHHHHHHTCCC
T ss_pred HHHHHHHHHhhhhhhHHHHHhccc
Confidence 998999999998 77889988754
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.02 E-value=2.6e-09 Score=117.41 Aligned_cols=159 Identities=18% Similarity=0.225 Sum_probs=102.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhC-----CcEEEEecCccccccccchHHHHHHHHHHh--hcCCCEEEEEcchhhcccc
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLG-----IHVVEYSCHNLMASSERKTSAALAQAFNTA--QSYSPTILLLRDFDVFRNL 471 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg-----~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A--~~~~P~IL~IDEID~L~~~ 471 (934)
++||+||||+|||++++++++.+. ..++.+++.+..+. ......+....... ....+.+++|||+|.+..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~- 124 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ- 124 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-
Confidence 499999999999999999999973 34788887653221 11111122211110 013478999999998754
Q ss_pred ccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcC
Q 002337 472 VSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMG 551 (934)
Q Consensus 472 ~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~ 551 (934)
+....|.++++. ....+.+|.+||.+..+.+.+++|+. .+.++
T Consensus 125 ---------------~~~~~L~~~le~---------------------~~~~~~~i~~~~~~~~l~~~l~sr~~-~~~~~ 167 (327)
T 1iqp_A 125 ---------------DAQQALRRTMEM---------------------FSSNVRFILSCNYSSKIIEPIQSRCA-IFRFR 167 (327)
T ss_dssp ---------------HHHHHHHHHHHH---------------------TTTTEEEEEEESCGGGSCHHHHHTEE-EEECC
T ss_pred ---------------HHHHHHHHHHHh---------------------cCCCCeEEEEeCCccccCHHHHhhCc-EEEec
Confidence 112223333221 13457788889999999999999986 89999
Q ss_pred CCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHH
Q 002337 552 PLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVA 602 (934)
Q Consensus 552 ~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~ 602 (934)
+|+.++..++++..++.... .. .+..++.++..+.| ..+.+..+++
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~---~~-~~~~~~~l~~~~~g-~~r~~~~~l~ 213 (327)
T 1iqp_A 168 PLRDEDIAKRLRYIAENEGL---EL-TEEGLQAILYIAEG-DMRRAINILQ 213 (327)
T ss_dssp CCCHHHHHHHHHHHHHTTTC---EE-CHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCC---CC-CHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 99999999999887754322 11 24456777777655 3333333433
No 154
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.02 E-value=2.8e-09 Score=119.64 Aligned_cols=159 Identities=18% Similarity=0.242 Sum_probs=106.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCc------------------------EEEEecCccccccccchHHHHHHHHHHh
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIH------------------------VVEYSCHNLMASSERKTSAALAQAFNTA 452 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~------------------------~~~I~~~~L~~~~~g~~e~~L~~~f~~A 452 (934)
+..+||+||+|+|||++++++|+.++.. ++.++... ......++.+++.+
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~ 111 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNV 111 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHH
Confidence 3468999999999999999999998542 22332221 01122345555555
Q ss_pred hc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEE
Q 002337 453 QS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVA 528 (934)
Q Consensus 453 ~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIa 528 (934)
.. ..+.+++|||+|.+.. .....|..+++. ....+++|+
T Consensus 112 ~~~~~~~~~~vliiDe~~~l~~----------------~~~~~Ll~~le~---------------------~~~~~~~Il 154 (373)
T 1jr3_A 112 QYAPARGRFKVYLIDEVHMLSR----------------HSFNALLKTLEE---------------------PPEHVKFLL 154 (373)
T ss_dssp TSCCSSSSSEEEEEECGGGSCH----------------HHHHHHHHHHHS---------------------CCSSEEEEE
T ss_pred hhccccCCeEEEEEECcchhcH----------------HHHHHHHHHHhc---------------------CCCceEEEE
Confidence 42 2468999999997753 112222233221 145688888
Q ss_pred ecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHH
Q 002337 529 AADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADA 604 (934)
Q Consensus 529 tTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A 604 (934)
+|+.+..+.+.+++|+ ..+.+++|+.++..++++..++.... .. ....++.++..+.| ..+++..+++.+
T Consensus 155 ~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~---~~-~~~a~~~l~~~~~G-~~r~~~~~l~~~ 224 (373)
T 1jr3_A 155 ATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHI---AH-EPRALQLLARAAEG-SLRDALSLTDQA 224 (373)
T ss_dssp EESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTC---CB-CHHHHHHHHHHSSS-CHHHHHHHHHHH
T ss_pred EeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 8888889999999988 58999999999999999988754322 12 23456778877766 566666666554
No 155
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.01 E-value=4.5e-10 Score=135.02 Aligned_cols=119 Identities=18% Similarity=0.259 Sum_probs=74.6
Q ss_pred CCEEEEEEcCCC--CCCChhhhCCCCcc---eeeeecC--CCCHHHHHHHHHHHHhcCC---CCcCC---CHHHHHhhCC
Q 002337 788 QDLFIIGASNRP--DLIDPALLRPGRFD---KLLYVGV--NSDVSYRERVLKALTRKFK---LLEDV---SLYSIAKKCP 854 (934)
Q Consensus 788 ~~v~vI~aTNrp--~~lD~allrpGRfd---~~i~v~~--Pp~~~~r~~Il~~~~~~~~---~~~~~---~l~~la~~~t 854 (934)
.++.||+|||+. +.++|+|++ ||+ ..++++. +...+....+++.+.+... ....+ .+..+++..+
T Consensus 251 ~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~ 328 (604)
T 3k1j_A 251 CDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQ 328 (604)
T ss_dssp CCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHH
T ss_pred eeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHh
Confidence 468899999987 679999999 997 4555432 2345556666655443221 11122 2344444321
Q ss_pred --CC------CCHHHHHHHHHHHHHHHHHHHhcccCCCCCCccccccCcccccHHHHHHHHHhhCCCcCHHHHHHHHHHH
Q 002337 855 --PN------FTGADMYALCADAWFHAAKRKVLSSDSNSDSSRIDQADSVVVEYDDFVKVLRELSPSLSMAELKKYELLR 926 (934)
Q Consensus 855 --~g------~sgaDl~~l~~~A~~~A~~r~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~psvs~~~l~~y~~~~ 926 (934)
.| .+-+++.++++.|...|..+ ....|+.+|+.+|++. +..+.++.++.|..-.
T Consensus 329 r~~g~r~~l~~~~R~l~~llr~A~~~A~~~-----------------~~~~I~~edv~~A~~~-~~~i~~~~~e~~l~~~ 390 (604)
T 3k1j_A 329 KRAGRKGHLTLRLRDLGGIVRAAGDIAVKK-----------------GKKYVEREDVIEAVKM-AKPLEKQLADWYIERK 390 (604)
T ss_dssp HTTCSTTEEECCHHHHHHHHHHHHHHHHHT-----------------TCSSBCHHHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred hhhccccccccCHHHHHHHHHHHHHHHHhc-----------------CcccccHHHHHHHHHh-hhhhHHHHHHHHhccc
Confidence 34 26789999999987666432 1235899999999965 3446666666666543
No 156
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.01 E-value=1e-09 Score=117.67 Aligned_cols=180 Identities=16% Similarity=0.167 Sum_probs=100.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhC---CcEEEEecCccccccc-----cchHH----H---HHHHHHHhhcCCCEEEEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLG---IHVVEYSCHNLMASSE-----RKTSA----A---LAQAFNTAQSYSPTILLL 462 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg---~~~~~I~~~~L~~~~~-----g~~e~----~---L~~~f~~A~~~~P~IL~I 462 (934)
.+|||+||||||||++|++++..++ .+++.++|..+..... |.... . ....+..+ .++++||
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~l 106 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFL 106 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHT---TTSEEEE
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhc---CCcEEEE
Confidence 5699999999999999999999874 6799999987632110 00000 0 01122222 3579999
Q ss_pred cchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCC-------CC
Q 002337 463 RDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-------EG 535 (934)
Q Consensus 463 DEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~-------~~ 535 (934)
||++.+... ....+..+++.-.- ...++ .......+.+|+|||.. ..
T Consensus 107 DEi~~l~~~------------~q~~Ll~~l~~~~~-------~~~g~-------~~~~~~~~~iI~atn~~~~~~~~~~~ 160 (265)
T 2bjv_A 107 DELATAPMM------------VQEKLLRVIEYGEL-------ERVGG-------SQPLQVNVRLVCATNADLPAMVNEGT 160 (265)
T ss_dssp ESGGGSCHH------------HHHHHHHHHHHCEE-------CCCCC---------CEECCCEEEEEESSCHHHHHHHTS
T ss_pred echHhcCHH------------HHHHHHHHHHhCCe-------ecCCC-------cccccCCeEEEEecCcCHHHHHHcCC
Confidence 999987641 12233333322100 00000 01123467899999875 24
Q ss_pred CChhhhcccc-eEEEcCCCCH--HHHHHHHHHhcccccc-ccCC---CCchHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 002337 536 LPPTIRRCFS-HEISMGPLTE--QQRVEMLSQLLQPVSE-LTSD---TGSEEFVKDIIGQTSGFMPRDLHALVADAGA 606 (934)
Q Consensus 536 Ld~aLrrrF~-~eI~i~~Pde--~~R~~IL~~ll~~~~~-l~~d---~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~ 606 (934)
+.+++.+||. ..+.+|++.+ ++...+++++++.... .... .-....++.+....-....+++..+++.+..
T Consensus 161 ~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 161 FRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp SCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred ccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 7888988885 4677777665 4555666655433211 1111 1123445555443222344667777776643
No 157
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.01 E-value=4.2e-09 Score=119.74 Aligned_cols=180 Identities=13% Similarity=0.092 Sum_probs=110.8
Q ss_pred CCccee--cCCCCCcchHHHHHHHHHc---------CCcEEEecCccccc------cc---c-------chhhhh-hHHH
Q 002337 684 RSGVLL--YGPPGTGKTLLAKAVATEC---------SLNFLSVKGPELIN------MY---I-------GESEKN-VRDI 735 (934)
Q Consensus 684 ~~~iLl--~GppGtGKT~lakalA~~~---------~~~~i~v~~~~l~~------~~---~-------Gese~~-v~~l 735 (934)
+..+++ +||+|+|||++++++++.. +..++++++....+ .. . |.+... ...+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 129 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKAL 129 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 457889 9999999999999998775 45678888643211 10 1 111111 2222
Q ss_pred HHHHH-hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCC--CCEEEEEEcCCCC---CCC---hhh
Q 002337 736 FQKAR-SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSS--QDLFIIGASNRPD---LID---PAL 806 (934)
Q Consensus 736 f~~A~-~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~--~~v~vI~aTNrp~---~lD---~al 806 (934)
.+... ...|.+|+|||++.+...+. .. ..++..++..++...... .++.+|++||.++ .++ +.+
T Consensus 130 ~~~l~~~~~~~llvlDe~~~l~~~~~---~~----~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~ 202 (412)
T 1w5s_A 130 VDNLYVENHYLLVILDEFQSMLSSPR---IA----AEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQV 202 (412)
T ss_dssp HHHHHHHTCEEEEEEESTHHHHSCTT---SC----HHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHH
T ss_pred HHHHHhcCCeEEEEEeCHHHHhhccC---cc----hHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchh
Confidence 22222 35689999999999964321 01 234555554444332112 5788999998775 344 667
Q ss_pred hCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCC---CcCCCHHHHHhhCCC------CCCHHHHHHHHHHHHHHHHH
Q 002337 807 LRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKL---LEDVSLYSIAKKCPP------NFTGADMYALCADAWFHAAK 875 (934)
Q Consensus 807 lrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~---~~~~~l~~la~~~t~------g~sgaDl~~l~~~A~~~A~~ 875 (934)
.+ ||...+.++ |.+.++..++++..+..... ..+..+..+++.+ . | ....+..+|..|+..|..
T Consensus 203 ~~--~~~~~i~l~-~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~G-~p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 203 ES--QIGFKLHLP-AYKSRELYTILEQRAELGLRDTVWEPRHLELISDVY-GEDKGGDG-SARRAIVALKMACEMAEA 275 (412)
T ss_dssp HT--TCSEEEECC-CCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHH-CGGGTSCC-CHHHHHHHHHHHHHHHHH
T ss_pred hh--hcCCeeeeC-CCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH-HHhccCCC-cHHHHHHHHHHHHHHHHH
Confidence 77 676668887 58888888998776653211 1122355666663 4 4 456778888887766543
No 158
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.99 E-value=1.3e-08 Score=113.30 Aligned_cols=164 Identities=16% Similarity=0.190 Sum_probs=108.2
Q ss_pred CCchHHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCC------------------------cE
Q 002337 370 PLQGDTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGI------------------------HV 425 (934)
Q Consensus 370 ~~~~~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~------------------------~~ 425 (934)
+...+..+.+...+.. -+.+..+||+||+|+|||++++++|+.+.. ++
T Consensus 5 pw~~~~~~~l~~~i~~--------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~ 76 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQA--------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY 76 (334)
T ss_dssp GGGHHHHHHHHHHHHT--------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE
T ss_pred CchHHHHHHHHHHHHc--------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 4455556666555431 134456999999999999999999999853 23
Q ss_pred EEEecCccccccccchHHHHHHHHHHhhc----CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCcc
Q 002337 426 VEYSCHNLMASSERKTSAALAQAFNTAQS----YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAE 501 (934)
Q Consensus 426 ~~I~~~~L~~~~~g~~e~~L~~~f~~A~~----~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~ 501 (934)
..++..+ .........++.+++.+.. ....|++|||+|.+.. +....|...++.
T Consensus 77 ~~~~~~~---~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~----------------~a~naLLk~lEe--- 134 (334)
T 1a5t_A 77 YTLAPEK---GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD----------------AAANALLKTLEE--- 134 (334)
T ss_dssp EEECCCT---TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH----------------HHHHHHHHHHTS---
T ss_pred EEEeccc---cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH----------------HHHHHHHHHhcC---
Confidence 3333220 0012234567777776653 2368999999998754 112222233321
Q ss_pred ccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHH
Q 002337 502 DEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEF 581 (934)
Q Consensus 502 ~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~ 581 (934)
....+++|.+|+.++.+.+.+++|+. .+.+++|+.++..++++... .. .+..
T Consensus 135 ------------------p~~~~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~~~~~~~~~L~~~~--------~~-~~~~ 186 (334)
T 1a5t_A 135 ------------------PPAETWFFLATREPERLLATLRSRCR-LHYLAPPPEQYAVTWLSREV--------TM-SQDA 186 (334)
T ss_dssp ------------------CCTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHC--------CC-CHHH
T ss_pred ------------------CCCCeEEEEEeCChHhCcHHHhhcce-eeeCCCCCHHHHHHHHHHhc--------CC-CHHH
Confidence 14567888889999999999999985 79999999999999988764 11 1334
Q ss_pred HHHHHhhcCC
Q 002337 582 VKDIIGQTSG 591 (934)
Q Consensus 582 L~~la~~t~G 591 (934)
+..++..+.|
T Consensus 187 ~~~l~~~s~G 196 (334)
T 1a5t_A 187 LLAALRLSAG 196 (334)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHcCC
Confidence 5666666655
No 159
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=3.6e-09 Score=118.18 Aligned_cols=159 Identities=13% Similarity=0.210 Sum_probs=98.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh-CCc----------------------------EEEEecCccccccccchHHHHHHHHH
Q 002337 400 VLLHGLPGCGKRTVVRYVARRL-GIH----------------------------VVEYSCHNLMASSERKTSAALAQAFN 450 (934)
Q Consensus 400 VLL~GppGtGKTtLaralA~el-g~~----------------------------~~~I~~~~L~~~~~g~~e~~L~~~f~ 450 (934)
++|+||+|+||||+++++|+++ +.. ++.++..+. .......+++.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~ 114 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDM----GNNDRIVIQELLK 114 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------CCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhc----CCcchHHHHHHHH
Confidence 9999999999999999999975 211 122222110 0011112444444
Q ss_pred Hhhc--------------CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhh
Q 002337 451 TAQS--------------YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEI 516 (934)
Q Consensus 451 ~A~~--------------~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~ 516 (934)
.+.. ..|.+++|||++.+.+ .....+.+.+.+.
T Consensus 115 ~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~------------~~~~~L~~~le~~--------------------- 161 (354)
T 1sxj_E 115 EVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK------------DAQAALRRTMEKY--------------------- 161 (354)
T ss_dssp HHTTTTC------------CCEEEEEECTTSSCH------------HHHHHHHHHHHHS---------------------
T ss_pred HHHHhccccccccccccCCCCeEEEEeCccccCH------------HHHHHHHHHHHhh---------------------
Confidence 3321 2567999999997543 1112233333221
Q ss_pred hhhhcccEEEEEecCCCCCCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHH
Q 002337 517 EKICRQQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRD 596 (934)
Q Consensus 517 ~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~D 596 (934)
...+.+|.+|+.+..+.+.+++|+ ..+.+++|+.+++.++++..++.... ..+.+..++.++..+.| ..++
T Consensus 162 ----~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~l~~i~~~~~G-~~r~ 232 (354)
T 1sxj_E 162 ----SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERI---QLETKDILKRIAQASNG-NLRV 232 (354)
T ss_dssp ----TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTC---EECCSHHHHHHHHHHTT-CHHH
T ss_pred ----cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCC---CCCcHHHHHHHHHHcCC-CHHH
Confidence 234678888889999999999998 68999999999999999987754322 11103446777777655 3344
Q ss_pred HHHHHHHH
Q 002337 597 LHALVADA 604 (934)
Q Consensus 597 L~~L~~~A 604 (934)
+..+++.+
T Consensus 233 a~~~l~~~ 240 (354)
T 1sxj_E 233 SLLMLESM 240 (354)
T ss_dssp HHHHHTHH
T ss_pred HHHHHHHH
Confidence 44444433
No 160
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=3.3e-09 Score=118.48 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=99.2
Q ss_pred cceecCCCCCcchHHHHHHHHHc-CC----------------------------cEEEecCccccccccchh-hhhhHHH
Q 002337 686 GVLLYGPPGTGKTLLAKAVATEC-SL----------------------------NFLSVKGPELINMYIGES-EKNVRDI 735 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~-~~----------------------------~~i~v~~~~l~~~~~Ges-e~~v~~l 735 (934)
+++|+||+|+|||++++++++.+ +. .++.+++.+. +.. ...+++.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 112 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDM-----GNNDRIVIQEL 112 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC---------CCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhc-----CCcchHHHHHH
Confidence 39999999999999999999954 21 1222222111 111 1135555
Q ss_pred HHHHH--------------hCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCC
Q 002337 736 FQKAR--------------SARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDL 801 (934)
Q Consensus 736 f~~A~--------------~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~ 801 (934)
++.+. ...|.|++|||++.+.+ ...+.|+..|+.. ..++.+|.+||.++.
T Consensus 113 i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~-------------~~~~~L~~~le~~---~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 113 LKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK-------------DAQAALRRTMEKY---SKNIRLIMVCDSMSP 176 (354)
T ss_dssp HHHHTTTTC------------CCEEEEEECTTSSCH-------------HHHHHHHHHHHHS---TTTEEEEEEESCSCS
T ss_pred HHHHHHhccccccccccccCCCCeEEEEeCccccCH-------------HHHHHHHHHHHhh---cCCCEEEEEeCCHHH
Confidence 55442 23677999999999631 1233444444433 235778888999999
Q ss_pred CChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCC-c-CCCHHHHHhhCCCCCCHHHHHHHHHHHH
Q 002337 802 IDPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-E-DVSLYSIAKKCPPNFTGADMYALCADAW 870 (934)
Q Consensus 802 lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~-~-~~~l~~la~~~t~g~sgaDl~~l~~~A~ 870 (934)
+.+++++ |+ ..+.|+ |++.++...+++...++.++. + +..+..+++.+ . -+-+++.++++.++
T Consensus 177 l~~~l~s--R~-~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~-~-G~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 177 IIAPIKS--QC-LLIRCP-APSDSEISTILSDVVTNERIQLETKDILKRIAQAS-N-GNLRVSLLMLESMA 241 (354)
T ss_dssp SCHHHHT--TS-EEEECC-CCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHH-T-TCHHHHHHHHTHHH
T ss_pred HHHHHHh--hc-eEEecC-CcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHc-C-CCHHHHHHHHHHHH
Confidence 9999998 88 778888 588888999998877654432 2 33367777763 2 23445555555443
No 161
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.96 E-value=3.7e-09 Score=117.68 Aligned_cols=142 Identities=15% Similarity=0.225 Sum_probs=96.8
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCC------------------------cEEEecCccccccccchhhhhhHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSL------------------------NFLSVKGPELINMYIGESEKNVRDIFQKA 739 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~------------------------~~i~v~~~~l~~~~~Gese~~v~~lf~~A 739 (934)
+..+||+||+|+|||++|+++|+.+.. +++.+++.+- +.. -.-..++++++.+
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~~--~~i~~ir~l~~~~ 100 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KNT--LGVDAVREVTEKL 100 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CSS--BCHHHHHHHHHHT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CCC--CCHHHHHHHHHHH
Confidence 456999999999999999999988643 2333332100 000 1223477787776
Q ss_pred Hh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCccee
Q 002337 740 RS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKL 815 (934)
Q Consensus 740 ~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~ 815 (934)
.. ..+.|++|||+|.+.. ...+.||..|+.. ..++++|.+||.++.+.|.+++ |+. .
T Consensus 101 ~~~~~~~~~kvviIdead~l~~-------------~a~naLLk~lEep---~~~~~~Il~t~~~~~l~~ti~S--Rc~-~ 161 (334)
T 1a5t_A 101 NEHARLGGAKVVWVTDAALLTD-------------AAANALLKTLEEP---PAETWFFLATREPERLLATLRS--RCR-L 161 (334)
T ss_dssp TSCCTTSSCEEEEESCGGGBCH-------------HHHHHHHHHHTSC---CTTEEEEEEESCGGGSCHHHHT--TSE-E
T ss_pred hhccccCCcEEEEECchhhcCH-------------HHHHHHHHHhcCC---CCCeEEEEEeCChHhCcHHHhh--cce-e
Confidence 53 3468999999999852 2456677777653 3567788888999999999999 884 6
Q ss_pred eeecCCCCHHHHHHHHHHHHhcCCCCcCCCHHHHHhh
Q 002337 816 LYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKK 852 (934)
Q Consensus 816 i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~l~~la~~ 852 (934)
+.|+ |++.++..++++... .+ .+..+..+++.
T Consensus 162 ~~~~-~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~ 193 (334)
T 1a5t_A 162 HYLA-PPPEQYAVTWLSREV---TM-SQDALLAALRL 193 (334)
T ss_dssp EECC-CCCHHHHHHHHHHHC---CC-CHHHHHHHHHH
T ss_pred eeCC-CCCHHHHHHHHHHhc---CC-CHHHHHHHHHH
Confidence 8888 578888888777654 22 22234566666
No 162
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.95 E-value=5e-09 Score=142.40 Aligned_cols=142 Identities=14% Similarity=0.210 Sum_probs=91.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCC
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESL 477 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~ 477 (934)
.+..+.||+|||||.+++.+|+.+|.+++.++|++-+ ....+..+|.-+.. .+++.++||++.+-.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~------d~~~~g~i~~G~~~-~GaW~cfDEfNrl~~------- 670 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF------DLQAMSRIFVGLCQ-CGAWGCFDEFNRLEE------- 670 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC------CHHHHHHHHHHHHH-HTCEEEEETTTSSCH-------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC------CHHHHHHHHhhHhh-cCcEEEehhhhcCCH-------
Confidence 3468999999999999999999999999999998633 34455666666554 589999999997643
Q ss_pred CCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCC----CCCCChhhhcccceEEEcCCC
Q 002337 478 PNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADS----SEGLPPTIRRCFSHEISMGPL 553 (934)
Q Consensus 478 ~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~----~~~Ld~aLrrrF~~eI~i~~P 553 (934)
++.+++.+.+........................+....++.|.|. ...||++++.+|. .+.+..|
T Consensus 671 ---------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr-~v~m~~P 740 (3245)
T 3vkg_A 671 ---------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFR-SMAMIKP 740 (3245)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEE-EEECCSC
T ss_pred ---------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcE-EEEEeCC
Confidence 2333322211100000000000000000001122456778888874 3469999999994 8999999
Q ss_pred CHHHHHHHHH
Q 002337 554 TEQQRVEMLS 563 (934)
Q Consensus 554 de~~R~~IL~ 563 (934)
|.+...+|+-
T Consensus 741 d~~~i~ei~L 750 (3245)
T 3vkg_A 741 DREMIAQVML 750 (3245)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9998888753
No 163
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.93 E-value=1.1e-09 Score=106.64 Aligned_cols=64 Identities=27% Similarity=0.277 Sum_probs=50.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRN 470 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~ 470 (934)
+.+|||+||||||||++|++++... +.+++ ++|..+... ......++.+. ++++||||+|.+.+
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a~---~g~l~ldei~~l~~ 90 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALAQ---GGTLVLSHPEHLTR 90 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHHT---TSCEEEECGGGSCH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHcC---CcEEEEcChHHCCH
Confidence 3469999999999999999999986 67888 999876654 22344555553 57999999998865
No 164
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.90 E-value=1.7e-09 Score=118.80 Aligned_cols=179 Identities=18% Similarity=0.184 Sum_probs=99.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccc---------cchHH---HHHHHHHHhhcCCCEEEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSE---------RKTSA---ALAQAFNTAQSYSPTILL 461 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~---------g~~e~---~L~~~f~~A~~~~P~IL~ 461 (934)
+.+|||+||||||||++|++++... +.+++.++|..+..... |...+ .....|+.|. ++++|
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~ 101 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD---GGTLF 101 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHT---TSEEE
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcC---CCEEE
Confidence 4569999999999999999999976 56899999987543110 00000 1122344443 57999
Q ss_pred EcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCC-------C
Q 002337 462 LRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-------E 534 (934)
Q Consensus 462 IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~-------~ 534 (934)
|||++.+... ....+..+++... ....++ .......+.+|+|||.. .
T Consensus 102 LDEi~~l~~~------------~q~~Ll~~l~~~~-------~~~~g~-------~~~~~~~~riI~atn~~l~~~v~~g 155 (304)
T 1ojl_A 102 LDEIGDISPL------------MQVRLLRAIQERE-------VQRVGS-------NQTISVDVRLIAATHRDLAEEVSAG 155 (304)
T ss_dssp EESCTTCCHH------------HHHHHHHHHHSSB-------CCBTTB-------CCCCBCCCEEEEEESSCHHHHHHHT
T ss_pred EeccccCCHH------------HHHHHHHHHhcCE-------eeecCC-------cccccCCeEEEEecCccHHHHHHhC
Confidence 9999987641 1222333332210 000000 01113467899999875 2
Q ss_pred CCChhhhcccc-eEEEcCCCCH--HHHHHHHHHhccccccc----cCCCCchHHHHHHHhhcCCCChHHHHHHHHHHH
Q 002337 535 GLPPTIRRCFS-HEISMGPLTE--QQRVEMLSQLLQPVSEL----TSDTGSEEFVKDIIGQTSGFMPRDLHALVADAG 605 (934)
Q Consensus 535 ~Ld~aLrrrF~-~eI~i~~Pde--~~R~~IL~~ll~~~~~l----~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~ 605 (934)
.+.+++..||. ..|.+|++.+ ++...+++++++..... .... ....++.+....-.-..+++.++++.+.
T Consensus 156 ~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~-s~~a~~~L~~~~wpGnvReL~~~l~~~~ 232 (304)
T 1ojl_A 156 RFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGF-TPQAMDLLIHYDWPGNIRELENAIERAV 232 (304)
T ss_dssp SSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCB-CHHHHHHHHHCCCSSHHHHHHHHHHHHH
T ss_pred CcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCC-CHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 36777877873 4567776663 45555666665432110 0111 2344555554431223456666666654
No 165
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.90 E-value=1.1e-09 Score=130.92 Aligned_cols=144 Identities=24% Similarity=0.296 Sum_probs=88.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEE----ecCccccccccch-HH---HHHHHHHHhhcCCCEEEEEcchhhc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY----SCHNLMASSERKT-SA---ALAQAFNTAQSYSPTILLLRDFDVF 468 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~I----~~~~L~~~~~g~~-e~---~L~~~f~~A~~~~P~IL~IDEID~L 468 (934)
..+|||+||||||||++|+++|+.++...+.. ++.++.+...... .+ .-...+..| .++++||||+|.+
T Consensus 327 ~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l 403 (595)
T 3f9v_A 327 DIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA---DGGIAVIDEIDKM 403 (595)
T ss_dssp SCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---SSSEECCTTTTCC
T ss_pred CcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEec---CCCcEEeehhhhC
Confidence 34899999999999999999999987655442 3333333211110 00 001122233 3589999999977
Q ss_pred cccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-------------C
Q 002337 469 RNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-------------G 535 (934)
Q Consensus 469 ~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~-------------~ 535 (934)
.+ +....|.+.+++.... -...| .......++.||||||... .
T Consensus 404 ~~----------------~~q~~Ll~~le~~~i~--i~~~g------~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~ 459 (595)
T 3f9v_A 404 RD----------------EDRVAIHEAMEQQTVS--IAKAG------IVAKLNARAAVIAAGNPKFGRYISERPVSDNIN 459 (595)
T ss_dssp CS----------------HHHHHHHHHHHSSSEE--EESSS------SEEEECCCCEEEEEECCTTCCSCTTSCSCTTTC
T ss_pred CH----------------hHhhhhHHHHhCCEEE--EecCC------cEEEecCceEEEEEcCCcCCccCcccCchhccC
Confidence 54 2233344444321100 00001 0111245789999999886 7
Q ss_pred CChhhhcccc-eEEEcCCCCHHHHHHHHHHhccc
Q 002337 536 LPPTIRRCFS-HEISMGPLTEQQRVEMLSQLLQP 568 (934)
Q Consensus 536 Ld~aLrrrF~-~eI~i~~Pde~~R~~IL~~ll~~ 568 (934)
+++++++||+ ..+..+.|+++ ...|+++.+..
T Consensus 460 l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 460 LPPTILSRFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp SCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred CCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 9999999996 46677778888 88888887653
No 166
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.88 E-value=7e-10 Score=107.96 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=50.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRN 470 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~ 470 (934)
+.+|+|+||||||||++|++++...+ +++.++|.++.... ....++.+. ++++||||+|.+..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a~---~~~l~lDei~~l~~ 89 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKAE---GGVLYVGDIAQYSR 89 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHTT---TSEEEEEECTTCCH
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhCC---CCeEEEeChHHCCH
Confidence 34699999999999999999999888 89999998654322 455566554 57999999998764
No 167
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=5.1e-09 Score=116.71 Aligned_cols=126 Identities=24% Similarity=0.274 Sum_probs=85.7
Q ss_pred cceecCCCCCcchHHHHHHHHHcC-----CcEEEecCccccccccchhhhhhHHHHHHHHh------CCCcEEEeccccc
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECS-----LNFLSVKGPELINMYIGESEKNVRDIFQKARS------ARPCVIFFDELDS 754 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~-----~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~------~~p~vlfiDEid~ 754 (934)
+++|+||||||||++++++|+.+. ..++.++.++.. | ...+++.+..... ..+.|++|||+|.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~ 121 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADA 121 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCC
Confidence 499999999999999999999853 246777765421 1 1234444433221 2368999999998
Q ss_pred cccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHHH
Q 002337 755 LAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKAL 834 (934)
Q Consensus 755 l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~ 834 (934)
+.. ...+.|+..|+.. ...+.+|.+||.++.+.+++++ |+. .+.++ |++.++..+++...
T Consensus 122 l~~-------------~~~~~L~~~le~~---~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~-~l~~~~~~~~l~~~ 181 (340)
T 1sxj_C 122 MTN-------------AAQNALRRVIERY---TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQ-PLPQEAIERRIANV 181 (340)
T ss_dssp SCH-------------HHHHHHHHHHHHT---TTTEEEEEEESCGGGSCHHHHT--TSE-EEECC-CCCHHHHHHHHHHH
T ss_pred CCH-------------HHHHHHHHHHhcC---CCCeEEEEEecCccccchhHHh--hce-eEecc-CCCHHHHHHHHHHH
Confidence 852 1234455555543 2356677788999999999999 886 56676 46677777777776
Q ss_pred Hhc
Q 002337 835 TRK 837 (934)
Q Consensus 835 ~~~ 837 (934)
+++
T Consensus 182 ~~~ 184 (340)
T 1sxj_C 182 LVH 184 (340)
T ss_dssp HHT
T ss_pred HHH
Confidence 643
No 168
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.81 E-value=3.3e-08 Score=110.07 Aligned_cols=144 Identities=17% Similarity=0.262 Sum_probs=93.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhC-----CcEEEEecCccccccccchHHHHHHHHHHhh-c-----CCCEEEEEcchhhc
Q 002337 400 VLLHGLPGCGKRTVVRYVARRLG-----IHVVEYSCHNLMASSERKTSAALAQAFNTAQ-S-----YSPTILLLRDFDVF 468 (934)
Q Consensus 400 VLL~GppGtGKTtLaralA~elg-----~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~-~-----~~P~IL~IDEID~L 468 (934)
++|+|||||||||+++++|+.+. ..+..+++++.. ....++..+.... . ..+.+++|||+|.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l 122 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAM 122 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC
Confidence 89999999999999999999973 246777765421 1223333332221 1 23689999999987
Q ss_pred cccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceEE
Q 002337 469 RNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHEI 548 (934)
Q Consensus 469 ~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~eI 548 (934)
.. .....|..+++. ....+.+|.+||.+..+.+.+++|+. .+
T Consensus 123 ~~----------------~~~~~L~~~le~---------------------~~~~~~~il~~n~~~~i~~~i~sR~~-~~ 164 (340)
T 1sxj_C 123 TN----------------AAQNALRRVIER---------------------YTKNTRFCVLANYAHKLTPALLSQCT-RF 164 (340)
T ss_dssp CH----------------HHHHHHHHHHHH---------------------TTTTEEEEEEESCGGGSCHHHHTTSE-EE
T ss_pred CH----------------HHHHHHHHHHhc---------------------CCCCeEEEEEecCccccchhHHhhce-eE
Confidence 54 112223333221 13445677888999999999999986 88
Q ss_pred EcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC
Q 002337 549 SMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (934)
Q Consensus 549 ~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G 591 (934)
.+.+++.++..+++...++.... ..+ +..++.++..+.|
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~---~i~-~~~~~~i~~~s~G 203 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKL---KLS-PNAEKALIELSNG 203 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTC---CBC-HHHHHHHHHHHTT
T ss_pred eccCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHcCC
Confidence 99999999998888877643221 122 3344556655543
No 169
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.79 E-value=3.1e-09 Score=120.72 Aligned_cols=170 Identities=19% Similarity=0.338 Sum_probs=104.7
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcC---CcEEEecCcccccc-------------ccchhhhhhHHHHHHHHhCCCcEE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECS---LNFLSVKGPELINM-------------YIGESEKNVRDIFQKARSARPCVI 747 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~---~~~i~v~~~~l~~~-------------~~Gese~~v~~lf~~A~~~~p~vl 747 (934)
...++++|++||||+++|+++..... .+|+.++|..+... |.|... .....|..|.+ .+|
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~-~~~g~~~~a~~---gtl 235 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS-SKEGFFELADG---GTL 235 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS-CBCCHHHHTTT---SEE
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc-ccCCceeeCCC---cEE
Confidence 45789999999999999999987653 68999999765321 222211 12356776654 499
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhcc--------CCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeee--
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEID--------GLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLY-- 817 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ld--------g~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~-- 817 (934)
|||||+.+.. .+...||..|+ +......++.||+|||+. -..+.+.|+|...+|
T Consensus 236 fldei~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~---l~~~~~~g~fr~dl~~r 299 (387)
T 1ny5_A 236 FLDEIGELSL-------------EAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRN---IKELVKEGKFREDLYYR 299 (387)
T ss_dssp EEESGGGCCH-------------HHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSC---HHHHHHTTSSCHHHHHH
T ss_pred EEcChhhCCH-------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCC---HHHHHHcCCccHHHHHh
Confidence 9999999852 23333433332 222223478999999975 234555678765433
Q ss_pred -----ecCCCCHHHHHHHH---HHHHhc----CCCC-cCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHHH
Q 002337 818 -----VGVNSDVSYRERVL---KALTRK----FKLL-EDVSLYSIAKKCPPNFTG--ADMYALCADAWFHA 873 (934)
Q Consensus 818 -----v~~Pp~~~~r~~Il---~~~~~~----~~~~-~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~A 873 (934)
+.+||-.+++++|. ..++++ +... ..++-+.+.......|.| ++|++++.+|+..+
T Consensus 300 l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 300 LGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp HTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred hcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 55577776666653 444332 2221 123333333322356766 59999998877543
No 170
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=2.3e-08 Score=109.86 Aligned_cols=125 Identities=11% Similarity=0.122 Sum_probs=90.2
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc------CCcEEEecCccccccccchhhhhhHHHHHHHHhC----CCcEEEecccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC------SLNFLSVKGPELINMYIGESEKNVRDIFQKARSA----RPCVIFFDELD 753 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~------~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~----~p~vlfiDEid 753 (934)
...+|||||||+|||++|+++|+.+ ..+++.+++++ ... .-..+|++++.+... ...|++|||+|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~~--~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---ENI--GIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SCB--CHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CCC--CHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 3578999999999999999999864 34677776532 011 223578888887643 23699999999
Q ss_pred ccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecCCCCHHHHHHHHHH
Q 002337 754 SLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDVSYRERVLKA 833 (934)
Q Consensus 754 ~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~Pp~~~~r~~Il~~ 833 (934)
.+. ....+.||..|+.. ..++++|.+||.|+.|.|++++ | .+.|+. ++.++..++++.
T Consensus 93 ~lt-------------~~a~naLLk~LEep---~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~-l~~~~i~~~L~~ 150 (305)
T 2gno_A 93 RMT-------------QQAANAFLKALEEP---PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVV-NVPKEFRDLVKE 150 (305)
T ss_dssp GBC-------------HHHHHHTHHHHHSC---CTTEEEEEEESCGGGSCHHHHT--T---SEEEEC-CCCHHHHHHHHH
T ss_pred HhC-------------HHHHHHHHHHHhCC---CCCeEEEEEECChHhChHHHHc--e---eEeCCC-CCHHHHHHHHHH
Confidence 984 23457788877754 3456666777888999999999 8 788885 555666666665
Q ss_pred HH
Q 002337 834 LT 835 (934)
Q Consensus 834 ~~ 835 (934)
..
T Consensus 151 ~~ 152 (305)
T 2gno_A 151 KI 152 (305)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 171
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.72 E-value=6e-08 Score=106.48 Aligned_cols=124 Identities=12% Similarity=0.114 Sum_probs=90.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh------CCcEEEEecCccccccccchHHHHHHHHHHhhcC----CCEEEEEcchhh
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL------GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSY----SPTILLLRDFDV 467 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el------g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~----~P~IL~IDEID~ 467 (934)
..+||+||||+|||++++++|+.+ ..++..++..+ ...+...++++++.+... ...|++|||+|.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~id~ir~li~~~~~~p~~~~~kvviIdead~ 93 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCER 93 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCCHHHHHHHHHHHhhccccCCceEEEeccHHH
Confidence 468999999999999999999874 45777776542 123445677777777632 236999999998
Q ss_pred ccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCCChhhhcccceE
Q 002337 468 FRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGLPPTIRRCFSHE 547 (934)
Q Consensus 468 L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~Ld~aLrrrF~~e 547 (934)
+.. .....|...++. ....+++|.+|+.+..+.+.+++| .
T Consensus 94 lt~----------------~a~naLLk~LEe---------------------p~~~t~fIl~t~~~~kl~~tI~SR---~ 133 (305)
T 2gno_A 94 MTQ----------------QAANAFLKALEE---------------------PPEYAVIVLNTRRWHYLLPTIKSR---V 133 (305)
T ss_dssp BCH----------------HHHHHTHHHHHS---------------------CCTTEEEEEEESCGGGSCHHHHTT---S
T ss_pred hCH----------------HHHHHHHHHHhC---------------------CCCCeEEEEEECChHhChHHHHce---e
Confidence 864 112223333321 145677888888899999999999 8
Q ss_pred EEcCCCCHHHHHHHHHHhc
Q 002337 548 ISMGPLTEQQRVEMLSQLL 566 (934)
Q Consensus 548 I~i~~Pde~~R~~IL~~ll 566 (934)
+.+++|++++..++++..+
T Consensus 134 ~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 8899999999988887765
No 172
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=98.67 E-value=1.3e-07 Score=95.37 Aligned_cols=152 Identities=16% Similarity=0.184 Sum_probs=106.9
Q ss_pred CceEEeecHhhhhhccccccceEEEeecCCCcceEEEEEEecCCCCCccccCCCCccCCCCCcccccCCCCCCCCccccc
Q 002337 92 DSALLGLSTCVLKQLSVTSGSLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDGDVHSKHSSPTMLTFPSIHLPQDDMELL 171 (934)
Q Consensus 92 ~~~~v~l~~~~l~~l~~~~G~~v~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (934)
.+++|-|+.+.|..|++.+|+.|.|++.. +..+++..-.+.. . ..
T Consensus 23 ~~~~vrL~~~~~~~L~~~~gd~VeI~g~~---~t~~~~w~~~~~~----~----------------------------d~ 67 (179)
T 1wlf_A 23 RDCFLHLPRRLVAQLHLLQNQAIEVASDH---QPTYLSWVEGRHF----N----------------------------DQ 67 (179)
T ss_dssp SSSCEEECHHHHHHTTCCTTCCEEEESSS---CCEEECEEECSSC----C------------------------------
T ss_pred CCcEEECCHHHHHHcCCCCCcEEEEEeCC---eeEEEEEECCCCc----c----------------------------cC
Confidence 57899999999999999999999998644 4555555532210 0 23
Q ss_pred cCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCceEEEEEEecCCCCCcceeeEEEeeecC
Q 002337 172 DRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKASLIKLGLQSVGQLPKYASHLRVSFVKIP 251 (934)
Q Consensus 172 ~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~p~~a~~~rv~~~~~p 251 (934)
..+++.|++.++.|+|+..|+ .|.+.+++++ +.|+.+.| -|
T Consensus 68 ~~~~I~Id~~~r~n~gv~~Gd----------------------------------~V~V~~~~~~-~~A~~V~l----aP 108 (179)
T 1wlf_A 68 SENVAEINRQVGQKLGLSSGD----------------------------------QVFLRPCSHV-VSCQQVEV----EP 108 (179)
T ss_dssp -CCEEEEEHHHHHHTTCCTTC----------------------------------EEEEEECSCC-EECSEEEE----EE
T ss_pred CCCEEEECHHHHhHCCCCCCC----------------------------------EEEEEECCCC-ccceEEEE----Ec
Confidence 457899999999999999985 5777887886 68997555 45
Q ss_pred CCCccccccCCchhhhhhhHHHHHHHHHhhcc-CCCeeecCCEEEEecccCCCCccccccccccCCCCCceEEEEEEEEe
Q 002337 252 ECGTLESLKGSSAIEAEDRQEKIDLALHNYFE-VDRYLARGDVFSVCINWNCSSMICIPCRQRLHRRSDNIIYFKVVAVE 330 (934)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~f~-~~r~~~~gd~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~ 330 (934)
.... -|. ..+.+..+|+.+|. ..|+|.+||+|.|.+. +...+.|+|+++.
T Consensus 109 ~~~d--D~e---------i~e~~a~~le~~Ll~QiR~v~~G~~i~v~~~------------------g~~~i~f~V~~~~ 159 (179)
T 1wlf_A 109 LSAD--DWE---------ILELHAISLEQHLLDQIRIVFPKAVVPIWVD------------------QQTYIFIQIVTLM 159 (179)
T ss_dssp SSHH--HHH---------HHHHSCSSHHHHHHHHCCEECTTCEEEEESS------------------SSCEEEEEEEEEE
T ss_pred CCcC--CeE---------EehhHHHHHHHHHhcCceeccCCCEEEEEec------------------CCeEEEEEEEEee
Confidence 5210 021 12344568888886 6899999999999863 2367999999999
Q ss_pred cCCCeEEEEeCCeeEEEE
Q 002337 331 PSEETVLRVNCTKTALVL 348 (934)
Q Consensus 331 ~~~~~~~~vd~~~T~lv~ 348 (934)
|+.+. +++. ..|.+..
T Consensus 160 P~~~~-v~It-~~TeI~v 175 (179)
T 1wlf_A 160 PAAPY-GRLE-TNTKLLI 175 (179)
T ss_dssp SCCSS-EECC-TTCEEEE
T ss_pred CCCCe-EEEC-CCcEEEE
Confidence 94333 3333 3455543
No 173
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.67 E-value=1.9e-08 Score=98.70 Aligned_cols=107 Identities=15% Similarity=0.255 Sum_probs=70.7
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccccCC
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPAR 759 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r 759 (934)
++..++|+||+|+|||+++++++... +...+++++.++... +....|.+|+|||++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence 46789999999999999999999877 667888888776543 112357899999998864221
Q ss_pred CCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcC-CCCCCC--hhhhCCCCcceeeeecC
Q 002337 760 GASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASN-RPDLID--PALLRPGRFDKLLYVGV 820 (934)
Q Consensus 760 ~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTN-rp~~lD--~allrpGRfd~~i~v~~ 820 (934)
...+-.++..+. ..+..++|| ||| .|..+. +.+.+ ||...+.+.+
T Consensus 100 ----------~~~l~~li~~~~---~~g~~~iii-ts~~~p~~l~~~~~L~S--Rl~~g~~~~l 147 (149)
T 2kjq_A 100 ----------QALLFSIFNRFR---NSGKGFLLL-GSEYTPQQLVIREDLRT--RMAYCLVYEV 147 (149)
T ss_dssp ----------HHHHHHHHHHHH---HHTCCEEEE-EESSCTTTSSCCHHHHH--HGGGSEECCC
T ss_pred ----------HHHHHHHHHHHH---HcCCcEEEE-ECCCCHHHccccHHHHH--HHhcCeeEEe
Confidence 223333333321 112223455 555 454333 88888 8877776665
No 174
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.64 E-value=2.4e-08 Score=112.67 Aligned_cols=170 Identities=19% Similarity=0.313 Sum_probs=100.7
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCc--EEEecCcccccc-----ccchhh-------hhhHHHHHHHHhCCCcEEEe
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLN--FLSVKGPELINM-----YIGESE-------KNVRDIFQKARSARPCVIFF 749 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~--~i~v~~~~l~~~-----~~Gese-------~~v~~lf~~A~~~~p~vlfi 749 (934)
...++++|++||||+++|+++....+.. |+.++|..+-.. .+|... +.-...|+.|.+ .+|||
T Consensus 152 ~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~---gtlfl 228 (368)
T 3dzd_A 152 KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQ---GTLFL 228 (368)
T ss_dssp CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTT---SEEEE
T ss_pred chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCC---CeEEe
Confidence 3569999999999999999998776443 999999765322 111111 112345666654 49999
Q ss_pred ccccccccCCCCCCCCchhHHHHHHhhhhhcc--------CCcCCCCCEEEEEEcCCCCCCChhhhCCCCcce-------
Q 002337 750 DELDSLAPARGASGDSGGVMDRVVSQMLAEID--------GLNDSSQDLFIIGASNRPDLIDPALLRPGRFDK------- 814 (934)
Q Consensus 750 DEid~l~~~r~~~~~~~~~~~~v~~~lL~~ld--------g~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~------- 814 (934)
|||+.+.+ .+...||..|+ +-.....++.+|+|||+. ...+...|+|..
T Consensus 229 dei~~l~~-------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~---l~~~v~~g~fr~dL~~rl~ 292 (368)
T 3dzd_A 229 DEVGELDQ-------------RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKN---LEEEIKKGNFREDLYYRLS 292 (368)
T ss_dssp ETGGGSCH-------------HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSC---HHHHHHTTSSCHHHHHHHT
T ss_pred cChhhCCH-------------HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCC---HHHHHHcCCccHHHHHHhC
Confidence 99999952 23444444433 111112368899999964 234455677765
Q ss_pred eeeecCCCCHHHHHHHH---HHHHhc----CCCC-cCCCHHHHHhhCCCCCCH--HHHHHHHHHHHHH
Q 002337 815 LLYVGVNSDVSYRERVL---KALTRK----FKLL-EDVSLYSIAKKCPPNFTG--ADMYALCADAWFH 872 (934)
Q Consensus 815 ~i~v~~Pp~~~~r~~Il---~~~~~~----~~~~-~~~~l~~la~~~t~g~sg--aDl~~l~~~A~~~ 872 (934)
.+.+.+||-.+++++|. ..++++ .... ..++-+.+.......|.| ++|.+++.+|+..
T Consensus 293 ~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 293 VFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp SEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred CeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 33455677777656653 344433 2211 223333333322356655 6777887776543
No 175
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.62 E-value=8.3e-09 Score=112.82 Aligned_cols=123 Identities=24% Similarity=0.301 Sum_probs=77.7
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHcCC--cEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEeccccccc
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATECSL--NFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLA 756 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~~~--~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~ 756 (934)
.|+.++..++|+||||||||++|.++|...+. .|+.....+.++.+..+.+..+..+++...... +|||||++.+.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~ 195 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVI 195 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccc
Confidence 45666677899999999999999999876544 466663345455555555666666777766654 99999999997
Q ss_pred cCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhh
Q 002337 757 PARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPAL 806 (934)
Q Consensus 757 ~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~al 806 (934)
..+...+.. +...+.+.+++.+|+++.. ..++.+|++|| |...|+++
T Consensus 196 ~~~~~~s~~-G~v~~~lrqlL~~L~~~~k-~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 196 GAAGGNTTS-GGISRGAFDLLSDIGAMAA-SRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHH-HHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccc-chHHHHHHHHHHHHHHHHh-hCCCEEEEEeC-CcccchhH
Confidence 654321111 1123455666666665532 23567888888 56666654
No 176
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.61 E-value=2.4e-07 Score=105.09 Aligned_cols=181 Identities=12% Similarity=0.116 Sum_probs=106.0
Q ss_pred CceEEE--ECCCCCcHHHHHHHHHHHh---------CCcEEEEecCcccccc----------------ccch-HHHHHHH
Q 002337 397 RVAVLL--HGLPGCGKRTVVRYVARRL---------GIHVVEYSCHNLMASS----------------ERKT-SAALAQA 448 (934)
Q Consensus 397 ~~~VLL--~GppGtGKTtLaralA~el---------g~~~~~I~~~~L~~~~----------------~g~~-e~~L~~~ 448 (934)
+..++| +||+|+|||++++.+++++ +..++.++|....... .+.. ...+..+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 129 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKAL 129 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 346889 9999999999999999887 4567888875321100 0111 1112222
Q ss_pred HHHhh-cCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhc--ccEE
Q 002337 449 FNTAQ-SYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICR--QQVL 525 (934)
Q Consensus 449 f~~A~-~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~--~~Vi 525 (934)
..... ...|.+|+|||++.+.... ....+....+.+++... .... .++.
T Consensus 130 ~~~l~~~~~~~llvlDe~~~l~~~~----------~~~~~~l~~l~~~~~~~------------------~~~~~~~~v~ 181 (412)
T 1w5s_A 130 VDNLYVENHYLLVILDEFQSMLSSP----------RIAAEDLYTLLRVHEEI------------------PSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHTCEEEEEEESTHHHHSCT----------TSCHHHHHHHHTHHHHS------------------CCTTSCCBEE
T ss_pred HHHHHhcCCeEEEEEeCHHHHhhcc----------CcchHHHHHHHHHHHhc------------------ccCCCCceEE
Confidence 22221 2458999999999886410 00112222121221100 0002 6788
Q ss_pred EEEecCCCC---CCC---hhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcC------CCC
Q 002337 526 LVAAADSSE---GLP---PTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTS------GFM 593 (934)
Q Consensus 526 VIatTn~~~---~Ld---~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~------Gfv 593 (934)
+|++|+.++ .++ +.+.++|...+.+++++.++..++++..+.... .........+..++..+. | .
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~G-~ 258 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL--RDTVWEPRHLELISDVYGEDKGGDG-S 258 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB--CTTSCCHHHHHHHHHHHCGGGTSCC-C
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC--CCCCCChHHHHHHHHHHHHhccCCC-c
Confidence 888887654 233 556667666699999999999999987654211 111122455677777777 5 4
Q ss_pred hHHHHHHHHHHHHHH
Q 002337 594 PRDLHALVADAGANL 608 (934)
Q Consensus 594 ~~DL~~L~~~A~~~a 608 (934)
++.+..++..+...+
T Consensus 259 p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 259 ARRAIVALKMACEMA 273 (412)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566777777665444
No 177
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.58 E-value=1.2e-07 Score=92.82 Aligned_cols=59 Identities=10% Similarity=0.205 Sum_probs=46.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhcc
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFR 469 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~ 469 (934)
.+..++|+||+|+|||+|++++++.+ |...+.+++.++... +....|.+++|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC
Confidence 34569999999999999999999988 667888888776643 112357899999998754
No 178
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.58 E-value=1.5e-07 Score=113.04 Aligned_cols=88 Identities=25% Similarity=0.365 Sum_probs=52.7
Q ss_pred cccEEEEEecCCC--CCCChhhhcccc---eEEEcCCC---CHHHHHHHHHHhcccccc--ccCCCCchHHHHHHHhh--
Q 002337 521 RQQVLLVAAADSS--EGLPPTIRRCFS---HEISMGPL---TEQQRVEMLSQLLQPVSE--LTSDTGSEEFVKDIIGQ-- 588 (934)
Q Consensus 521 ~~~ViVIatTn~~--~~Ld~aLrrrF~---~eI~i~~P---de~~R~~IL~~ll~~~~~--l~~d~~~~~~L~~la~~-- 588 (934)
...+.||+|||.. ..+++++++||. .++.++.. .......+++.+.+.... ..... .+..+..++..
T Consensus 250 p~~~~vI~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-s~eAl~~Li~~~~ 328 (604)
T 3k1j_A 250 PCDFVLVAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHF-TKEAVEEIVREAQ 328 (604)
T ss_dssp ECCCEEEEEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCB-BHHHHHHHHHHHH
T ss_pred ceeEEEEEecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccC-CHHHHHHHHHHHh
Confidence 3467899999976 579999999986 45665432 344555555544332210 01112 23344445443
Q ss_pred -cCC------CChHHHHHHHHHHHHHHH
Q 002337 589 -TSG------FMPRDLHALVADAGANLI 609 (934)
Q Consensus 589 -t~G------fv~~DL~~L~~~A~~~ai 609 (934)
..| ...+++..+++.|...+.
T Consensus 329 r~~g~r~~l~~~~R~l~~llr~A~~~A~ 356 (604)
T 3k1j_A 329 KRAGRKGHLTLRLRDLGGIVRAAGDIAV 356 (604)
T ss_dssp HTTCSTTEEECCHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccCHHHHHHHHHHHHHHHH
Confidence 356 268999999998865553
No 179
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.54 E-value=4.7e-08 Score=98.35 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=64.1
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHc----CCcEEEecCccccccccchhhh-hhHHHHHHHHhCCCcEEEeccccccc
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATEC----SLNFLSVKGPELINMYIGESEK-NVRDIFQKARSARPCVIFFDELDSLA 756 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~----~~~~i~v~~~~l~~~~~Gese~-~v~~lf~~A~~~~p~vlfiDEid~l~ 756 (934)
..+.+++|+||||||||++++++++.+ +..++.++..++...+...... ....+++.. ..|.+|+|||++...
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~ 113 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER 113 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc
Confidence 446889999999999999999999876 5667777777765543322111 111223322 367899999998542
Q ss_pred cCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC
Q 002337 757 PARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 800 (934)
Q Consensus 757 ~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~ 800 (934)
. .......+.+++...- . .+..+|.+||.+.
T Consensus 114 ~--------~~~~~~~l~~ll~~~~---~--~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 114 L--------SDWQRELISYIITYRY---N--NLKSTIITTNYSL 144 (180)
T ss_dssp C--------CHHHHHHHHHHHHHHH---H--TTCEEEEECCCCS
T ss_pred C--------CHHHHHHHHHHHHHHH---H--cCCCEEEEcCCCh
Confidence 1 1223345555554431 1 2245666888764
No 180
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.53 E-value=6.4e-08 Score=109.10 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=82.4
Q ss_pred hcCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccccccchhhhhhHHHHHHHHhCCCcEEEecccccccc
Q 002337 678 SSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAP 757 (934)
Q Consensus 678 ~~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~~~p~vlfiDEid~l~~ 757 (934)
..++.++..++|+||||+|||++++++++..+..++.+..++-. ....+..+ ....++|+||++.+..
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg~~------~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELGVA------IDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHGGG------TTCSCEEETTCCCSTT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHHHh------cchhHHHHHHHHHHHH
Confidence 34788889999999999999999999999988777665443210 00112222 2346789999999886
Q ss_pred -CCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeec
Q 002337 758 -ARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVG 819 (934)
Q Consensus 758 -~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~ 819 (934)
.|+..... +. . ....+...+||. +.|+.+||+++.+ ++++||||++..++..
T Consensus 231 ~~r~l~~~~-~~-~-~~~~l~~~ldG~------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l 283 (377)
T 1svm_A 231 ESRDLPSGQ-GI-N-NLDNLRDYLDGS------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSV 283 (377)
T ss_dssp TTTTCCCCS-HH-H-HHHTTHHHHHCS------SCEEECCSSSCCE-EECCCCEEEEECSCCC
T ss_pred HHhhccccC-cc-h-HHHHHHHHhcCC------CeEeeccCchhhH-HHhhcCcccChhHHhh
Confidence 33321111 11 1 224455556653 4577889999999 7999999999988885
No 181
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.51 E-value=1.4e-07 Score=83.45 Aligned_cols=76 Identities=16% Similarity=0.249 Sum_probs=63.1
Q ss_pred cCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhcccccCCCCCchhhhhh
Q 002337 550 MGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAK 629 (934)
Q Consensus 550 i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~ 629 (934)
-.+||.++|.+||+.++++.+. ..+++ ++.+|..|.||+|+||.+||++|++.++++.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l-~~dvd----l~~LA~~T~G~SGADL~~l~~eAa~~alr~~----------------- 65 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNL-TRGIN----LRKIAELMPGASGAEVKGVCTEAGMYALRER----------------- 65 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEE-CTTCC----CHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-----------------
T ss_pred CCCcCHHHHHHHHHHHHcCCCC-CcccC----HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-----------------
Confidence 3579999999999999987653 33444 5889999999999999999999999998752
Q ss_pred hhccCcchhhhhhcCCHHHHHHHHHhhhc
Q 002337 630 VAHNDNSSIAATQVMGKEDLVKAMERSKK 658 (934)
Q Consensus 630 ~~~~~~~~~~~~~~i~~ed~~~aL~~~k~ 658 (934)
...++++||..++++++.
T Consensus 66 -----------~~~I~~~df~~Al~~v~p 83 (86)
T 2krk_A 66 -----------RVHVTQEDFEMAVAKVMQ 83 (86)
T ss_dssp -----------CSEECHHHHHHHHHHHHC
T ss_pred -----------CCCCCHHHHHHHHHHHcc
Confidence 235789999999988754
No 182
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.49 E-value=2.2e-07 Score=80.59 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhcccccCCCCCchhhhhhh
Q 002337 551 GPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKV 630 (934)
Q Consensus 551 ~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~ 630 (934)
|.|+.++|.+||+.++++... ..++ .++.+|..|+||+|+||..+|++|++.++++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~-~~~~----dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------ 57 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNL-TRGI----NLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------ 57 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEE-CTTC----CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------------
T ss_pred CcCCHHHHHHHHHHHhcCCCC-CCcc----CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------------------
Confidence 679999999999999987653 2333 47899999999999999999999999998752
Q ss_pred hccCcchhhhhhcCCHHHHHHHHHhhhc
Q 002337 631 AHNDNSSIAATQVMGKEDLVKAMERSKK 658 (934)
Q Consensus 631 ~~~~~~~~~~~~~i~~ed~~~aL~~~k~ 658 (934)
...++++||..+++++..
T Consensus 58 ----------~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 58 ----------RVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp ----------CSEECHHHHHHHHHHHHC
T ss_pred ----------CCCCCHHHHHHHHHHHHh
Confidence 235789999999988754
No 183
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.47 E-value=3.6e-07 Score=93.91 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=78.1
Q ss_pred CcceecCCCCCcchHHHHHHHHH--------cC-CcEEEecCcccccccc----------chhhh--hhHHHHHHH--Hh
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATE--------CS-LNFLSVKGPELINMYI----------GESEK--NVRDIFQKA--RS 741 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~--------~~-~~~i~v~~~~l~~~~~----------Gese~--~v~~lf~~A--~~ 741 (934)
.-.+++|+||+|||++|.+++.. .| .+++..+..+|.-.+. ..... ....+++.+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 45789999999999999886433 23 5555566565543332 11111 123444442 23
Q ss_pred CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcceeeeecC
Q 002337 742 ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGV 820 (934)
Q Consensus 742 ~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd~~i~v~~ 820 (934)
...+||+|||++.+.+.|...... .+++..| ... ....+-||.+|+.++.||.++++ |++.++++..
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~----~rll~~l----~~~--r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~ 152 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKI----PENVQWL----NTH--RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIAS 152 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCC----CHHHHGG----GGT--TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEE
T ss_pred cCceEEEEEChhhhccCccccchh----HHHHHHH----Hhc--CcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcC
Confidence 457899999999998766321111 1344333 322 23345567778889999999988 9999999885
No 184
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.37 E-value=3.1e-07 Score=93.96 Aligned_cols=71 Identities=28% Similarity=0.381 Sum_probs=49.9
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccccchh-hhhhHHHHHHHHhCCCcEEEeccccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMYIGES-EKNVRDIFQKARSARPCVIFFDELDSLA 756 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~~Ges-e~~v~~lf~~A~~~~p~vlfiDEid~l~ 756 (934)
+.+++|+||||||||++|++++..+ +.+++.++++++...+.... ...+..+++.... +.+|+|||++...
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 3789999999999999999999877 67788888877655432211 1123444454443 3599999997754
No 185
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.30 E-value=3.1e-07 Score=92.28 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=46.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh----CCcEEEEecCccccccccchHH-HHHHHHHHhhcCCCEEEEEcchhhc
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRL----GIHVVEYSCHNLMASSERKTSA-ALAQAFNTAQSYSPTILLLRDFDVF 468 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~el----g~~~~~I~~~~L~~~~~g~~e~-~L~~~f~~A~~~~P~IL~IDEID~L 468 (934)
..+.+++|+||||||||||++++++.+ |..++.+++.++.......... .....+... ..|.+++|||++..
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~ 112 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSE 112 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCC
Confidence 346789999999999999999999987 5566667666554321110000 000112222 25789999999743
No 186
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.28 E-value=8.2e-07 Score=97.10 Aligned_cols=74 Identities=9% Similarity=0.108 Sum_probs=49.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCc--EEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccc
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIH--VVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRN 470 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~~--~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~ 470 (934)
..+..++|+||||||||+|+..+|.+.|.. ++.....+.+..+....+..++.+++...... +++||+++.+..
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 445568999999999999999999875544 44442233333222445556666666665543 999999999865
No 187
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.25 E-value=1.1e-06 Score=77.97 Aligned_cols=72 Identities=17% Similarity=0.186 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhcccccCCCCCchhhhhhhhcc
Q 002337 554 TEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHN 633 (934)
Q Consensus 554 de~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~ 633 (934)
|.++|.+||+.++++.+. ..++ .++.+|..|+||+|+||..||++|++.++++.
T Consensus 2 d~~~R~~Il~~~~~~~~~-~~dv----dl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~--------------------- 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSV-ERGI----RWELISRLCPNSTGAELRSVCTEAGMFAIRAR--------------------- 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCB-CSCC----CHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS---------------------
T ss_pred CHHHHHHHHHHHHCCCCC-CCcc----CHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc---------------------
Confidence 578999999999987653 3344 47899999999999999999999999998762
Q ss_pred CcchhhhhhcCCHHHHHHHHHhhhc
Q 002337 634 DNSSIAATQVMGKEDLVKAMERSKK 658 (934)
Q Consensus 634 ~~~~~~~~~~i~~ed~~~aL~~~k~ 658 (934)
...++++||..|++++..
T Consensus 56 -------~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 56 -------RKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp -------CSSBCHHHHHHHHHHHTC
T ss_pred -------cccCCHHHHHHHHHHHhc
Confidence 124789999999998754
No 188
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.18 E-value=8.1e-07 Score=97.64 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=47.1
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc----CCcEEEecCccccccccchh-hhhhHHHHHHHHhCCCcEEEeccccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC----SLNFLSVKGPELINMYIGES-EKNVRDIFQKARSARPCVIFFDELDSLA 756 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~----~~~~i~v~~~~l~~~~~Ges-e~~v~~lf~~A~~~~p~vlfiDEid~l~ 756 (934)
+.+++|+||||||||++|+++|.++ +.+++.+++++++..+.+.. ...+...+.... .+.+|+|||++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 5799999999999999999998765 47788888877765433211 111222333332 34699999997653
No 189
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.16 E-value=1.5e-06 Score=88.76 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=46.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccccccc-hHHHHHHHHHHhhcCCCEEEEEcchhhcc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASSERK-TSAALAQAFNTAQSYSPTILLLRDFDVFR 469 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~~g~-~e~~L~~~f~~A~~~~P~IL~IDEID~L~ 469 (934)
.+++|+||+|||||++++++++++ +..++.++++++....... ....+...+..... +.+|+|||++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 689999999999999999999988 6778888887654422110 00011222333332 3599999997543
No 190
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.13 E-value=1.8e-05 Score=87.34 Aligned_cols=166 Identities=13% Similarity=0.086 Sum_probs=96.5
Q ss_pred CcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccc-----c---------------------------cccc------
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI-----N---------------------------MYIG------ 726 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~-----~---------------------------~~~G------ 726 (934)
..++++||+|+|||++++.+++..+..++++++.... + ...|
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 4789999999999999999999887777777765320 0 0000
Q ss_pred --h------hhhhhHHHHHHHHhC--CCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEc
Q 002337 727 --E------SEKNVRDIFQKARSA--RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGAS 796 (934)
Q Consensus 727 --e------se~~v~~lf~~A~~~--~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aT 796 (934)
. ....+..+++..... .|.+|+|||++.+.... +..+ ...+..+.... .++.+|.++
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~-----~~~~-~~~l~~~~~~~-------~~~~~i~~g 177 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR-----GVNL-LPALAYAYDNL-------KRIKFIMSG 177 (357)
T ss_dssp SEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT-----TCCC-HHHHHHHHHHC-------TTEEEEEEE
T ss_pred EEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC-----chhH-HHHHHHHHHcC-------CCeEEEEEc
Confidence 0 012345566555443 38999999999986421 1111 23334443321 245555565
Q ss_pred CCCCCCCh-------hhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCCHHHHHHHHH
Q 002337 797 NRPDLIDP-------ALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFTGADMYALCA 867 (934)
Q Consensus 797 Nrp~~lD~-------allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~sgaDl~~l~~ 867 (934)
+....+.. .-.-.||+...+.++ |.+.++-.+++...+.......+ +...+... +.|+.. -+..++.
T Consensus 178 ~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~-~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~-t~G~P~-~l~~~~~ 251 (357)
T 2fna_A 178 SEMGLLYDYLRVEDPESPLFGRAFSTVELK-PFSREEAIEFLRRGFQEADIDFK-DYEVVYEK-IGGIPG-WLTYFGF 251 (357)
T ss_dssp SSHHHHHHHTTTTCTTSTTTTCCCEEEEEC-CCCHHHHHHHHHHHHHHHTCCCC-CHHHHHHH-HCSCHH-HHHHHHH
T ss_pred CchHHHHHHHhccCCCCccccCccceeecC-CCCHHHHHHHHHHHHHHcCCCCC-cHHHHHHH-hCCCHH-HHHHHHH
Confidence 53221111 000135777788888 58888888888876654333222 23777777 477654 3444443
No 191
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.12 E-value=3.1e-05 Score=85.35 Aligned_cols=166 Identities=13% Similarity=0.176 Sum_probs=93.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccc------c---------cc-------------------------
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLM------A---------SS------------------------- 437 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~------~---------~~------------------------- 437 (934)
..++++||+|+|||+|++.++++.+ .+.++|.... . ..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 3599999999999999999999986 6667664321 0 00
Q ss_pred ccchHHHHHHHHHHhhcCCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhh
Q 002337 438 ERKTSAALAQAFNTAQSYSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIE 517 (934)
Q Consensus 438 ~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~ 517 (934)
.......++.+...+....|.+|+|||++.+.... .....++...|..+.+.
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~---------~~~~~~~~~~L~~~~~~------------------- 161 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG---------SRGGKELLALFAYAYDS------------------- 161 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT---------TTTTHHHHHHHHHHHHH-------------------
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC---------ccchhhHHHHHHHHHHh-------------------
Confidence 00011112222222222249999999999875310 00112445555444321
Q ss_pred hhhcccEEEEEecCCCC---------CCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhh
Q 002337 518 KICRQQVLLVAAADSSE---------GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQ 588 (934)
Q Consensus 518 ~~~~~~ViVIatTn~~~---------~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~ 588 (934)
..++.+|.++.... .....+..++.+.+.+++.+.++-.+++...+..... .. ....+..+...
T Consensus 162 ---~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~---~~-~~~~~~~i~~~ 234 (350)
T 2qen_A 162 ---LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL---DV-PENEIEEAVEL 234 (350)
T ss_dssp ---CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC---CC-CHHHHHHHHHH
T ss_pred ---cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHH
Confidence 12444555543211 1122233455568999999999999999876543211 11 23456778888
Q ss_pred cCCCChHHHHHHH
Q 002337 589 TSGFMPRDLHALV 601 (934)
Q Consensus 589 t~Gfv~~DL~~L~ 601 (934)
+.|+.. -+..++
T Consensus 235 tgG~P~-~l~~~~ 246 (350)
T 2qen_A 235 LDGIPG-WLVVFG 246 (350)
T ss_dssp HTTCHH-HHHHHH
T ss_pred hCCCHH-HHHHHH
Confidence 888543 344443
No 192
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.10 E-value=1.8e-05 Score=87.33 Aligned_cols=162 Identities=12% Similarity=0.164 Sum_probs=92.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccc----cccc---------------------------------c--
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLM----ASSE---------------------------------R-- 439 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~----~~~~---------------------------------g-- 439 (934)
.++++||+|+|||+|++.++++++...+.+++.... .... +
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 111 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNE 111 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSS
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceE
Confidence 599999999999999999999988777788875420 0000 0
Q ss_pred -c------hHHHHHHHHHHhhcC--CCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCC
Q 002337 440 -K------TSAALAQAFNTAQSY--SPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGY 510 (934)
Q Consensus 440 -~------~e~~L~~~f~~A~~~--~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~ 510 (934)
. ....+..+++..... .|.+|+|||++.+.... . .++...|..+.+.
T Consensus 112 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~--------~----~~~~~~l~~~~~~------------ 167 (357)
T 2fna_A 112 IKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR--------G----VNLLPALAYAYDN------------ 167 (357)
T ss_dssp EEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT--------T----CCCHHHHHHHHHH------------
T ss_pred EEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC--------c----hhHHHHHHHHHHc------------
Confidence 0 001233333333222 38999999999875410 0 0122333333210
Q ss_pred CchhhhhhhhcccEEEEEecCCCC---------CCChhhhcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHH
Q 002337 511 FPVKEIEKICRQQVLLVAAADSSE---------GLPPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEF 581 (934)
Q Consensus 511 ~~~~~~~~~~~~~ViVIatTn~~~---------~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~ 581 (934)
..++.+|.+++... .....+..++...+.+++++.++-.+++...+..... ..+.
T Consensus 168 ----------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~--- 231 (357)
T 2fna_A 168 ----------LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI---DFKD--- 231 (357)
T ss_dssp ----------CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC---CCCC---
T ss_pred ----------CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC---CCCc---
Confidence 12455555554321 1112233455578999999999999999876542211 1111
Q ss_pred HHHHHhhcCCCChHHHHHHH
Q 002337 582 VKDIIGQTSGFMPRDLHALV 601 (934)
Q Consensus 582 L~~la~~t~Gfv~~DL~~L~ 601 (934)
...+...+.|+.. -+..++
T Consensus 232 ~~~i~~~t~G~P~-~l~~~~ 250 (357)
T 2fna_A 232 YEVVYEKIGGIPG-WLTYFG 250 (357)
T ss_dssp HHHHHHHHCSCHH-HHHHHH
T ss_pred HHHHHHHhCCCHH-HHHHHH
Confidence 1667778887643 344443
No 193
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.09 E-value=2.5e-06 Score=74.81 Aligned_cols=74 Identities=14% Similarity=0.305 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhcccccCCCCCchhhhhhhhc
Q 002337 553 LTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKVAH 632 (934)
Q Consensus 553 Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~ 632 (934)
.|.++|.+||+.++++.+. ..+++ ++.+|..|+||+|+||..+|++|++.++++.
T Consensus 1 ~d~~~R~~Il~~~l~~~~~-~~~vd----l~~la~~t~G~SGADi~~l~~eA~~~a~~~~-------------------- 55 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMNL-SEEVD----LEDYVARPDKISGADINSICQESGMLAVREN-------------------- 55 (83)
T ss_dssp CCHHHHHHHHHHHHTTSCB-CTTCC----THHHHTSSCCCCHHHHHHHHHHHHHGGGTSC--------------------
T ss_pred CCHHHHHHHHHHHhCCCCC-CcccC----HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--------------------
Confidence 3689999999999987653 23333 6889999999999999999999998876542
Q ss_pred cCcchhhhhhcCCHHHHHHHHHhhhcc
Q 002337 633 NDNSSIAATQVMGKEDLVKAMERSKKR 659 (934)
Q Consensus 633 ~~~~~~~~~~~i~~ed~~~aL~~~k~~ 659 (934)
...++++||..+++++++.
T Consensus 56 --------~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 56 --------RYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp --------CSSBCHHHHHHHHHHHCC-
T ss_pred --------cCCcCHHHHHHHHHHHccC
Confidence 2457899999999988654
No 194
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.08 E-value=9.6e-06 Score=92.59 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=69.3
Q ss_pred CCcceecCCCCCcchHHHHHH-HHHcCCcEE-EecCc---cccccccchh-hhhhHHHHHHHHhCCCcEEEecccccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAV-ATECSLNFL-SVKGP---ELINMYIGES-EKNVRDIFQKARSARPCVIFFDELDSLAP 757 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakal-A~~~~~~~i-~v~~~---~l~~~~~Ges-e~~v~~lf~~A~~~~p~vlfiDEid~l~~ 757 (934)
..++||.|+||| ||++|+++ +.......+ ...++ .|.....+.+ ...-.-.+..|.. .|+|+|||+.+-+
T Consensus 239 dihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~~~ 314 (506)
T 3f8t_A 239 RLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRGWALRAGAAVLADG---GILAVDHLEGAPE 314 (506)
T ss_dssp CCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEESSSEEEEECHHHHTTT---SEEEEECCTTCCH
T ss_pred ceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcCCCcccCCCeeEEcCC---CeeehHhhhhCCH
Confidence 458999999999 99999999 665533222 11111 1111100000 0001123334433 4999999998753
Q ss_pred CCCCCCCCchhHHHHHHhhhhhcc-------CCcCCCCCEEEEEEcCCCC-----------CCChhhhCCCCcceeeee
Q 002337 758 ARGASGDSGGVMDRVVSQMLAEID-------GLNDSSQDLFIIGASNRPD-----------LIDPALLRPGRFDKLLYV 818 (934)
Q Consensus 758 ~r~~~~~~~~~~~~v~~~lL~~ld-------g~~~~~~~v~vI~aTNrp~-----------~lD~allrpGRfd~~i~v 818 (934)
.....|+..|+ |. .-..++.||||+|..+ .|.++++. |||-.+.+
T Consensus 315 -------------~~qsaLlEaMEe~~VtI~G~-~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~ 377 (506)
T 3f8t_A 315 -------------PHRWALMEAMDKGTVTVDGI-ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFL 377 (506)
T ss_dssp -------------HHHHHHHHHHHHSEEEETTE-EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEET
T ss_pred -------------HHHHHHHHHHhCCcEEECCE-EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEe
Confidence 23444444443 33 2245789999999875 78899999 99975543
No 195
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.99 E-value=5e-06 Score=85.40 Aligned_cols=124 Identities=11% Similarity=0.142 Sum_probs=73.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHH--------hC-CcEEEEecCccccccc----------cc-----hHHHHHHHHHHhhc
Q 002337 399 AVLLHGLPGCGKRTVVRYVARR--------LG-IHVVEYSCHNLMASSE----------RK-----TSAALAQAFNTAQS 454 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~e--------lg-~~~~~I~~~~L~~~~~----------g~-----~e~~L~~~f~~A~~ 454 (934)
-+|++|+||+|||+++...+.. .| .+++..++.++.-... .. ....+...+..+ .
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~ 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP-E 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG-G
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc-c
Confidence 4799999999999998886544 24 5565666665532211 00 112233222112 2
Q ss_pred CCCEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC
Q 002337 455 YSPTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE 534 (934)
Q Consensus 455 ~~P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~ 534 (934)
..+++|+|||++.+.+.+.. + . +...++..+.. .....+-+|.+|+.+.
T Consensus 86 ~~~~vliIDEAq~l~~~~~~-~--~-------e~~rll~~l~~---------------------~r~~~~~iil~tq~~~ 134 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSA-G--S-------KIPENVQWLNT---------------------HRHQGIDIFVLTQGPK 134 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCT-T--C-------CCCHHHHGGGG---------------------TTTTTCEEEEEESCGG
T ss_pred cCceEEEEEChhhhccCccc-c--c-------hhHHHHHHHHh---------------------cCcCCeEEEEECCCHH
Confidence 35799999999998753211 1 0 00112222211 1133456677777889
Q ss_pred CCChhhhcccceEEEcCCCC
Q 002337 535 GLPPTIRRCFSHEISMGPLT 554 (934)
Q Consensus 535 ~Ld~aLrrrF~~eI~i~~Pd 554 (934)
.|+.+++.|+...+.+..|.
T Consensus 135 ~l~~~lr~ri~~~~~l~~~~ 154 (199)
T 2r2a_A 135 LLDQNLRTLVRKHYHIASNK 154 (199)
T ss_dssp GBCHHHHTTEEEEEEEEECS
T ss_pred HHhHHHHHHhheEEEEcCcc
Confidence 99999999998888888643
No 196
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.93 E-value=5.2e-05 Score=85.30 Aligned_cols=142 Identities=16% Similarity=0.270 Sum_probs=83.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCc--EEEEecCcccccc---------ccchH---HHHHHHHHHhhcCCCEEEEEc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIH--VVEYSCHNLMASS---------ERKTS---AALAQAFNTAQSYSPTILLLR 463 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~--~~~I~~~~L~~~~---------~g~~e---~~L~~~f~~A~~~~P~IL~ID 463 (934)
.+|+++|++||||+++++++....+.. ++.+||..+.... .|... ..-...|+.|. .+.||||
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~---~gtlfld 229 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELAD---QGTLFLD 229 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTT---TSEEEEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcC---CCeEEec
Confidence 359999999999999999999887543 9999998653321 00000 00112345443 4789999
Q ss_pred chhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCC-------CCC
Q 002337 464 DFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-------EGL 536 (934)
Q Consensus 464 EID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~-------~~L 536 (934)
||+.+... ....+..+|+.-. ....++. ....-.+.+|+|||.. ..+
T Consensus 230 ei~~l~~~------------~Q~~Ll~~l~~~~-------~~~~g~~-------~~~~~~~rii~at~~~l~~~v~~g~f 283 (368)
T 3dzd_A 230 EVGELDQR------------VQAKLLRVLETGS-------FTRLGGN-------QKIEVDIRVISATNKNLEEEIKKGNF 283 (368)
T ss_dssp TGGGSCHH------------HHHHHHHHHHHSE-------ECCBTCC-------CBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred ChhhCCHH------------HHHHHHHHHHhCC-------cccCCCC-------cceeeeeEEEEecCCCHHHHHHcCCc
Confidence 99988651 2223333332210 0000110 1113457789999864 124
Q ss_pred Chhhhccc-ceEEEcCCCCH--HHHHHHHHHhccc
Q 002337 537 PPTIRRCF-SHEISMGPLTE--QQRVEMLSQLLQP 568 (934)
Q Consensus 537 d~aLrrrF-~~eI~i~~Pde--~~R~~IL~~ll~~ 568 (934)
.+++..|+ ...|.+|+..+ ++...+++++++.
T Consensus 284 r~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~ 318 (368)
T 3dzd_A 284 REDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKK 318 (368)
T ss_dssp CHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHH
T ss_pred cHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHH
Confidence 45555553 33688888777 5677777777654
No 197
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.92 E-value=1.2e-05 Score=91.18 Aligned_cols=143 Identities=18% Similarity=0.223 Sum_probs=83.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC---CcEEEEecCcccccc---------ccchHH---HHHHHHHHhhcCCCEEEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLG---IHVVEYSCHNLMASS---------ERKTSA---ALAQAFNTAQSYSPTILL 461 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg---~~~~~I~~~~L~~~~---------~g~~e~---~L~~~f~~A~~~~P~IL~ 461 (934)
..+|+++|++||||+++++++....+ .+|+.++|..+.... .|...+ .....|+.|. .+.||
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~---~gtlf 236 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELAD---GGTLF 236 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEE
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCC---CcEEE
Confidence 34699999999999999999988764 689999998654311 010000 0112344443 58999
Q ss_pred EcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCC-------C
Q 002337 462 LRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS-------E 534 (934)
Q Consensus 462 IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~-------~ 534 (934)
||||+.+.. .....+..+|..-. ....++. ......+.+|+|||.. .
T Consensus 237 ldei~~l~~------------~~q~~Ll~~l~~~~-------~~~~g~~-------~~~~~~~rii~at~~~l~~~~~~g 290 (387)
T 1ny5_A 237 LDEIGELSL------------EAQAKLLRVIESGK-------FYRLGGR-------KEIEVNVRILAATNRNIKELVKEG 290 (387)
T ss_dssp EESGGGCCH------------HHHHHHHHHHHHSE-------ECCBTCC-------SBEECCCEEEEEESSCHHHHHHTT
T ss_pred EcChhhCCH------------HHHHHHHHHHhcCc-------EEeCCCC-------ceeeccEEEEEeCCCCHHHHHHcC
Confidence 999998765 12233333333210 0001110 1113467899999874 2
Q ss_pred CCChhhhccc-ceEEEcCCCCH--HHHHHHHHHhccc
Q 002337 535 GLPPTIRRCF-SHEISMGPLTE--QQRVEMLSQLLQP 568 (934)
Q Consensus 535 ~Ld~aLrrrF-~~eI~i~~Pde--~~R~~IL~~ll~~ 568 (934)
.+.+.+..|+ ...|.+|+..+ ++...+++++++.
T Consensus 291 ~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~ 327 (387)
T 1ny5_A 291 KFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKK 327 (387)
T ss_dssp SSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHH
T ss_pred CccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHH
Confidence 3455555443 44677777655 4555666666543
No 198
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.88 E-value=0.00011 Score=80.92 Aligned_cols=166 Identities=20% Similarity=0.188 Sum_probs=90.2
Q ss_pred CcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccc------------c---ccc-----------------ch----h
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI------------N---MYI-----------------GE----S 728 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~------------~---~~~-----------------Ge----s 728 (934)
..++++||+|+|||++++.+++..+ ++++++.... . ... |. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 5789999999999999999998875 5555543221 0 000 00 0
Q ss_pred hhhhHHHHHHH----HhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCC--
Q 002337 729 EKNVRDIFQKA----RSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLI-- 802 (934)
Q Consensus 729 e~~v~~lf~~A----~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~l-- 802 (934)
...+.++++.. ....|.+|+|||++.+..... .........+..++.. . .++.+|.++.....+
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~---~~~~~~~~~L~~~~~~---~----~~~~~il~g~~~~~l~~ 179 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS---RGGKELLALFAYAYDS---L----PNLKIILTGSEVGLLHD 179 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT---TTTHHHHHHHHHHHHH---C----TTEEEEEEESSHHHHHH
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc---cchhhHHHHHHHHHHh---c----CCeEEEEECCcHHHHHH
Confidence 12233343332 222489999999999864110 0111112233333222 1 245555555432111
Q ss_pred -------ChhhhCCCCcceeeeecCCCCHHHHHHHHHHHHhcCCCC-cCCCHHHHHhhCCCCCCHHHHHHHHH
Q 002337 803 -------DPALLRPGRFDKLLYVGVNSDVSYRERVLKALTRKFKLL-EDVSLYSIAKKCPPNFTGADMYALCA 867 (934)
Q Consensus 803 -------D~allrpGRfd~~i~v~~Pp~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~~t~g~sgaDl~~l~~ 867 (934)
...+ .||+...+.++ |.+.++-.+++...++..... .+..+..+... +.|+-. -+..++.
T Consensus 180 ~l~~~~~~~~l--~~~~~~~i~l~-pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~-tgG~P~-~l~~~~~ 247 (350)
T 2qen_A 180 FLKITDYESPL--YGRIAGEVLVK-PFDKDTSVEFLKRGFREVNLDVPENEIEEAVEL-LDGIPG-WLVVFGV 247 (350)
T ss_dssp HHCTTCTTSTT--TTCCCEEEECC-CCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHH-HTTCHH-HHHHHHH
T ss_pred HHhhcCCCCcc--ccCccceeeCC-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hCCCHH-HHHHHHH
Confidence 1112 25776778887 588888888887766544322 12235566777 467654 3444443
No 199
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.84 E-value=7.8e-05 Score=75.01 Aligned_cols=28 Identities=36% Similarity=0.768 Sum_probs=24.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~ 426 (934)
.+.|.||||+|||||++.+++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999999875443
No 200
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.82 E-value=8.4e-06 Score=89.49 Aligned_cols=70 Identities=14% Similarity=0.263 Sum_probs=45.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC----CcEEEEecCccccccccc-hHHHHHHHHHHhhcCCCEEEEEcchhhc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLG----IHVVEYSCHNLMASSERK-TSAALAQAFNTAQSYSPTILLLRDFDVF 468 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg----~~~~~I~~~~L~~~~~g~-~e~~L~~~f~~A~~~~P~IL~IDEID~L 468 (934)
+.+++|+||||||||+|++++|.++. ..+..+++++++...... ....+...+.... .+.+|+|||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 56899999999999999999998764 677888887655422111 1111222222222 3469999999644
No 201
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.80 E-value=1.3e-05 Score=94.45 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=24.6
Q ss_pred CCCCCcceecCCCCCcchHHHHHHHHHc
Q 002337 681 LRKRSGVLLYGPPGTGKTLLAKAVATEC 708 (934)
Q Consensus 681 ~~~~~~iLl~GppGtGKT~lakalA~~~ 708 (934)
+.++.-+.|.||+|+||||++++++...
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567788999999999999999999764
No 202
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.79 E-value=6.6e-06 Score=98.40 Aligned_cols=57 Identities=26% Similarity=0.297 Sum_probs=38.8
Q ss_pred hcccceEEEcCCCCHHHHHHHHHHhccccccccCCCCc-----------hHHHHHHHhhcCC----CChHHHHHHHH
Q 002337 541 RRCFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGS-----------EEFVKDIIGQTSG----FMPRDLHALVA 602 (934)
Q Consensus 541 rrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~-----------~~~L~~la~~t~G----fv~~DL~~L~~ 602 (934)
..+...+++.| +.||..|.+.++.++..+..|... ..++.++.+. | ++.||+..+..
T Consensus 222 ~~~~~~~LSGG---ekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~--g~tvIivsHdl~~~~~ 293 (607)
T 3bk7_A 222 LDRELHQLSGG---ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE--GKAVLVVEHDLAVLDY 293 (607)
T ss_dssp GGSBGGGCCHH---HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHH
T ss_pred hCCChhhCCHH---HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc--CCEEEEEecChHHHHh
Confidence 34555689999 999999999999988777544432 2344455432 4 67898876543
No 203
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.79 E-value=1.4e-05 Score=95.42 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=26.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
..+.-+.|.||+|+|||||++++++.+.+..+.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~ 133 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCce
Confidence 344559999999999999999999987654433
No 204
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.77 E-value=1.4e-05 Score=81.86 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=27.1
Q ss_pred CCCCCcceecCCCCCcchHHHHHHHHHcCCcEE
Q 002337 681 LRKRSGVLLYGPPGTGKTLLAKAVATECSLNFL 713 (934)
Q Consensus 681 ~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i 713 (934)
+.+..+++||||||||||++|.++|+.+...++
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 333567999999999999999999998865443
No 205
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.67 E-value=0.00012 Score=73.76 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=23.3
Q ss_pred cceecCCCCCcchHHHHHHHHHcCCcE
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECSLNF 712 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~~~~ 712 (934)
.+.|.||+|+||||+++.++...+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999876443
No 206
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.67 E-value=0.00014 Score=83.02 Aligned_cols=126 Identities=18% Similarity=0.094 Sum_probs=68.6
Q ss_pred eEEEECCCCCcHHHHHHHH-HHHhCCcEEEEecC-----ccccccccchHHHH-HHHHHHhhcCCCEEEEEcchhhcccc
Q 002337 399 AVLLHGLPGCGKRTVVRYV-ARRLGIHVVEYSCH-----NLMASSERKTSAAL-AQAFNTAQSYSPTILLLRDFDVFRNL 471 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaral-A~elg~~~~~I~~~-----~L~~~~~g~~e~~L-~~~f~~A~~~~P~IL~IDEID~L~~~ 471 (934)
+|||.|+||| ||++++++ ++.+.. ...+.+. .+.+...+.+...+ ...+..|. ..++|+|||+.+.+
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR-~~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~LAd---gGvl~lDEIn~~~~- 314 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPR-GVYVDLRRTELTDLTAVLKEDRGWALRAGAAVLAD---GGILAVDHLEGAPE- 314 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSS-EEEEEGGGCCHHHHSEEEEESSSEEEEECHHHHTT---TSEEEEECCTTCCH-
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCC-eEEecCCCCCccCceEEEEcCCCcccCCCeeEEcC---CCeeehHhhhhCCH-
Confidence 7999999999 99999999 665433 2222211 11111000000000 11223332 48999999997654
Q ss_pred ccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC-----------CCChhh
Q 002337 472 VSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE-----------GLPPTI 540 (934)
Q Consensus 472 ~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~-----------~Ld~aL 540 (934)
.....|.+.+++..- ... +.....++.||||+|... .|++++
T Consensus 315 ---------------~~qsaLlEaMEe~~V----------tI~--G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~al 367 (506)
T 3f8t_A 315 ---------------PHRWALMEAMDKGTV----------TVD--GIALNARCAVLAAINPGEQWPSDPPIARIDLDQDF 367 (506)
T ss_dssp ---------------HHHHHHHHHHHHSEE----------EET--TEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHH
T ss_pred ---------------HHHHHHHHHHhCCcE----------EEC--CEEcCCCeEEEEEeCcccccCCCCCccccCCChHH
Confidence 334444444432110 000 113366789999999865 789999
Q ss_pred hcccce-EEEcCCCCHHH
Q 002337 541 RRCFSH-EISMGPLTEQQ 557 (934)
Q Consensus 541 rrrF~~-eI~i~~Pde~~ 557 (934)
++||+- .+..+.|+.+.
T Consensus 368 LDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 368 LSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp HTTCSEEEETTC------
T ss_pred hhheeeEEEecCCCChhH
Confidence 999964 45566666544
No 207
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.66 E-value=1.4e-05 Score=69.77 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=44.5
Q ss_pred HHHHHHHHHhccccccccCCCCchHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhcccccCCCCCchhhhhhhhccCc
Q 002337 556 QQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSGFMPRDLHALVADAGANLIRKSNSEVDKNEPGESDLTAKVAHNDN 635 (934)
Q Consensus 556 ~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~Gfv~~DL~~L~~~A~~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~ 635 (934)
++|.+||+.++++.+. ..+++ ++.+|..|+||+|+||.++|++|++.++++.
T Consensus 1 ~~R~~Il~~~l~~~~~-~~~vd----l~~lA~~t~G~SGADi~~l~~eAa~~ai~~~----------------------- 52 (82)
T 2dzn_B 1 MERRLIFGTIASKMSL-APEAD----LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN----------------------- 52 (82)
T ss_dssp -------------CEE-CTTCC----STTTTTSSCCCCHHHHHHHHHHHHHHHHHTT-----------------------
T ss_pred CHHHHHHHHHHcCCCC-CCcCC----HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------------
Confidence 4799999999987653 33444 5789999999999999999999999998752
Q ss_pred chhhhhhcCCHHHHHHHHHhhh
Q 002337 636 SSIAATQVMGKEDLVKAMERSK 657 (934)
Q Consensus 636 ~~~~~~~~i~~ed~~~aL~~~k 657 (934)
...++++||..+++++.
T Consensus 53 -----~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 53 -----RYVILQSDLEEAYATQV 69 (82)
T ss_dssp -----CSEECHHHHHHHHHTTC
T ss_pred -----cCCcCHHHHHHHHHHHH
Confidence 13578899999998774
No 208
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.64 E-value=4.7e-05 Score=94.75 Aligned_cols=218 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred ccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHH--------hCCcEEEEecCccccccccchHHHHHHHHHHhhcCC
Q 002337 385 PTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARR--------LGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYS 456 (934)
Q Consensus 385 p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~e--------lg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~ 456 (934)
+.+..-.+.+..+.-+.|+||+|+|||||+|++++- -....+.+.-..............+.. ....
T Consensus 449 ~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~-----~~~~ 523 (986)
T 2iw3_A 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFE-----SGVG 523 (986)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHT-----TCSS
T ss_pred EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHH-----hhcC
Q ss_pred CEEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCCCC
Q 002337 457 PTILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSEGL 536 (934)
Q Consensus 457 P~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~~L 536 (934)
. ++ ++..++..+ ++
T Consensus 524 ~-----~~----------------------~v~~~L~~l---------------------------------------gL 537 (986)
T 2iw3_A 524 T-----KE----------------------AIKDKLIEF---------------------------------------GF 537 (986)
T ss_dssp C-----HH----------------------HHHHHHHHT---------------------------------------TC
T ss_pred H-----HH----------------------HHHHHHHHc---------------------------------------CC
Q ss_pred ChhhhcccceEEEcCCCCHHHHHHHHHHhccccccc-------cCCCCchHHHHHHHhhcCC----CChHHHHHHHHHHH
Q 002337 537 PPTIRRCFSHEISMGPLTEQQRVEMLSQLLQPVSEL-------TSDTGSEEFVKDIIGQTSG----FMPRDLHALVADAG 605 (934)
Q Consensus 537 d~aLrrrF~~eI~i~~Pde~~R~~IL~~ll~~~~~l-------~~d~~~~~~L~~la~~t~G----fv~~DL~~L~~~A~ 605 (934)
+..+..+....++.| +.+|..|.+.++.++..+ ++|.....++.++... .| ++.||+..+..-+
T Consensus 538 ~~~~~~~~~~~LSGG---qkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~a- 612 (986)
T 2iw3_A 538 TDEMIAMPISALSGG---WKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVC- 612 (986)
T ss_dssp CHHHHHSBGGGCCHH---HHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHC-
T ss_pred ChhhhcCCcccCCHH---HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhC-
Q ss_pred HHHHHhhcccccCCCCCchhhhhhhhccCcchhhhhhcC-----CHHHHHHHHHhhhcccccccCCCCCccchhH-----
Q 002337 606 ANLIRKSNSEVDKNEPGESDLTAKVAHNDNSSIAATQVM-----GKEDLVKAMERSKKRNASALGAPKLPLLHKD----- 675 (934)
Q Consensus 606 ~~ai~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i-----~~ed~~~aL~~~k~~~~~~i~~pk~pl~~~~----- 675 (934)
..-.......+ ..+++.......+.............+..+.
T Consensus 613 ----------------------------drii~L~~G~iv~~~G~~~e~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 664 (986)
T 2iw3_A 613 ----------------------------EYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGV 664 (986)
T ss_dssp ----------------------------SEEEEEETTEEEEEESCHHHHHHHCGGGGGSSSTTTCCCCCCCCCCCCCTTC
T ss_pred ----------------------------CEEEEEECCeeecCCCCHHHHHhhhHHHHHHHhhhhhhhhcccccccccccc
Q ss_pred -------H-------------------hhcCCCCCCcceecCCCCCcchHHHHHHHH
Q 002337 676 -------L-------------------FSSGLRKRSGVLLYGPPGTGKTLLAKAVAT 706 (934)
Q Consensus 676 -------~-------------------~~~~~~~~~~iLl~GppGtGKT~lakalA~ 706 (934)
+ ++..+.++..+.|.||+|+|||||.+.+++
T Consensus 665 ~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaG 721 (986)
T 2iw3_A 665 KTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 721 (986)
T ss_dssp CSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTT
T ss_pred ccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhC
No 209
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.63 E-value=5.6e-05 Score=77.33 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=25.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHV 425 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~ 425 (934)
..++|++||||||||+++.++|+.++-.+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 45799999999999999999999986543
No 210
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.49 E-value=2.1e-05 Score=95.57 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=22.5
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHH
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVA 705 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA 705 (934)
..+.++.-+.|.||+|+||||+++++.
T Consensus 343 l~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 343 VKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 356678889999999999999997653
No 211
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.38 E-value=0.00067 Score=69.91 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=27.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSC 430 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~ 430 (934)
..+..++|+||||+||||+++.++..+ +..+..++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 455669999999999999999999765 445555543
No 212
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.35 E-value=0.00022 Score=76.09 Aligned_cols=29 Identities=41% Similarity=0.686 Sum_probs=25.1
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHcCC
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATECSL 710 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~~~ 710 (934)
.+..+++||||||||||++|+++|..+..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 44568999999999999999999997654
No 213
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.33 E-value=0.0005 Score=70.47 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=34.3
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCcc
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPE 719 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~ 719 (934)
.++.++.-++++||||+|||++++.++...+...++++..+
T Consensus 15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 15 GGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SSBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 47888888999999999999999999886667777777544
No 214
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.31 E-value=0.00022 Score=74.44 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=53.7
Q ss_pred hcCCCCCCcceecCCCCCcchHHHHHHHHH--c-------CCcEEEecCcccccc--------ccch-------------
Q 002337 678 SSGLRKRSGVLLYGPPGTGKTLLAKAVATE--C-------SLNFLSVKGPELINM--------YIGE------------- 727 (934)
Q Consensus 678 ~~~~~~~~~iLl~GppGtGKT~lakalA~~--~-------~~~~i~v~~~~l~~~--------~~Ge------------- 727 (934)
..++.++.-++|+||||+|||++++.++.. . +...+++++.+.... ..|-
T Consensus 18 ~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 97 (243)
T 1n0w_A 18 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYAR 97 (243)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE
T ss_pred cCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEe
Confidence 357888889999999999999999999985 2 456777776542110 0110
Q ss_pred --h-h---hhhHHHHHHHHhCCCcEEEeccccccccC
Q 002337 728 --S-E---KNVRDIFQKARSARPCVIFFDELDSLAPA 758 (934)
Q Consensus 728 --s-e---~~v~~lf~~A~~~~p~vlfiDEid~l~~~ 758 (934)
+ + ..+..+.+.+....|.+|+|||+..+...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 0 0 11223444455578999999999988743
No 215
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.26 E-value=2.6e-05 Score=87.69 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=30.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+..+.-+.|.||+|||||||+|++|+.+...-+.|..
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i 62 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEE
Confidence 3444559999999999999999999998877666543
No 216
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.26 E-value=0.0013 Score=67.37 Aligned_cols=39 Identities=18% Similarity=0.075 Sum_probs=31.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCc
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHN 432 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~ 432 (934)
+..+.-++|+||||+||||+++.+|...+..++.++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 345566999999999999999999986677777777654
No 217
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.25 E-value=0.00066 Score=72.37 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=27.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
..+++|+||||||||++++++|+.++. .+.++.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~ 136 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNW 136 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCT
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeec
Confidence 457999999999999999999998765 455544
No 218
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.25 E-value=0.00056 Score=76.27 Aligned_cols=106 Identities=25% Similarity=0.310 Sum_probs=66.1
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccc----------------cchhhhhhHHHHHHH
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMY----------------IGESEKNVRDIFQKA 739 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~----------------~Gese~~v~~lf~~A 739 (934)
.|+.++.-++++||||+|||+++..++..+ +..+++++..+..... ....+..+..+-...
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 478888889999999999999999998764 5677778765532210 011122222222233
Q ss_pred HhCCCcEEEeccccccccCC---CCCCCC-chhHHHHHHhhhhhccCCc
Q 002337 740 RSARPCVIFFDELDSLAPAR---GASGDS-GGVMDRVVSQMLAEIDGLN 784 (934)
Q Consensus 740 ~~~~p~vlfiDEid~l~~~r---~~~~~~-~~~~~~v~~~lL~~ldg~~ 784 (934)
+...|.++++|.+..+.+.. +..++. -....+.+.+++..|..+.
T Consensus 136 ~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~la 184 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSV 184 (356)
T ss_dssp HTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999888621 111221 1133566777776666553
No 219
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.23 E-value=0.00056 Score=76.66 Aligned_cols=116 Identities=23% Similarity=0.327 Sum_probs=66.5
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccc----cc------------hhhhhhHHHHHHH
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMY----IG------------ESEKNVRDIFQKA 739 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~----~G------------ese~~v~~lf~~A 739 (934)
.|+.++.-++++||||+|||++|..+|... +.++++++...-...+ .| ..+..+..+-...
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 478888889999999999999999887654 5677777754422221 11 1111122222223
Q ss_pred HhCCCcEEEeccccccccCCCCC---CCC-chhHHHHHHhhhhhccCCcCCCCCEEEEEE
Q 002337 740 RSARPCVIFFDELDSLAPARGAS---GDS-GGVMDRVVSQMLAEIDGLNDSSQDLFIIGA 795 (934)
Q Consensus 740 ~~~~p~vlfiDEid~l~~~r~~~---~~~-~~~~~~v~~~lL~~ldg~~~~~~~v~vI~a 795 (934)
+...+.+|+||.+..+.++.... ++. .+...+.+.+++..|..+.. ..++.||.+
T Consensus 149 ~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~-~~~~~VI~~ 207 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILS-KTGTAAIFI 207 (366)
T ss_dssp TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHT-TTCCEEEEE
T ss_pred hcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHH-HcCCEEEEE
Confidence 34678999999999998633211 111 01223556666666654322 233444443
No 220
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.17 E-value=5e-05 Score=84.74 Aligned_cols=36 Identities=31% Similarity=0.372 Sum_probs=29.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEe
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~ 429 (934)
+..+.-+.|.||+|||||||+|++|+.+...-+.|.
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~ 62 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEE
Confidence 344445999999999999999999999887766654
No 221
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.15 E-value=0.00036 Score=73.04 Aligned_cols=133 Identities=17% Similarity=0.193 Sum_probs=72.2
Q ss_pred hhcCCCCCCcceecCCCCCcchHHHHHHH--HH--cCCcEEEecCcccccc------ccc--------------------
Q 002337 677 FSSGLRKRSGVLLYGPPGTGKTLLAKAVA--TE--CSLNFLSVKGPELINM------YIG-------------------- 726 (934)
Q Consensus 677 ~~~~~~~~~~iLl~GppGtGKT~lakalA--~~--~~~~~i~v~~~~l~~~------~~G-------------------- 726 (934)
+..++.++.-+.|.||||+|||++++.++ .. .+...+.+...+.... .+|
T Consensus 23 l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 23 IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 33478888999999999999999999988 32 2344444443221100 000
Q ss_pred ----------------hhhhhhHHHHHHHHhCCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCE
Q 002337 727 ----------------ESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDL 790 (934)
Q Consensus 727 ----------------ese~~v~~lf~~A~~~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v 790 (934)
..+.....+........|.+|++||.-++..... +. ....+.+..++..+.. .++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~---d~-~~~~~~l~~l~~~l~~-----~g~ 173 (251)
T 2ehv_A 103 VVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE---EE-RKIREVLLKLNTILLE-----MGV 173 (251)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS---SG-GGHHHHHHHHHHHHHH-----HCC
T ss_pred ccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC---CH-HHHHHHHHHHHHHHHH-----CCC
Confidence 0011123333344557899999999987763211 11 1233445566655431 234
Q ss_pred EEEEEcCCCCCCC-----hhhhCCCCc-ceeeeecC
Q 002337 791 FIIGASNRPDLID-----PALLRPGRF-DKLLYVGV 820 (934)
Q Consensus 791 ~vI~aTNrp~~lD-----~allrpGRf-d~~i~v~~ 820 (934)
.||.+|+..+... +.+.+ -+ |..+.+..
T Consensus 174 tii~vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~~ 207 (251)
T 2ehv_A 174 TTILTTEAPDPQHGKLSRYGIEE--FIARGVIVLDL 207 (251)
T ss_dssp EEEEEECCC----CCSSSSSCGG--GGCSEEEEEEE
T ss_pred eEEEEECCCCCCcccccccChhh--EeeeEEEEEee
Confidence 5566777665442 22222 35 77777753
No 222
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.13 E-value=0.00032 Score=78.22 Aligned_cols=79 Identities=22% Similarity=0.306 Sum_probs=52.5
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccc----cc------------hhhhhhHHHHHHH
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMY----IG------------ESEKNVRDIFQKA 739 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~----~G------------ese~~v~~lf~~A 739 (934)
.|+.++.-++++||||+|||+++..++... +..+++++...-.... .| ..+..+..+...+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 477888889999999999999999987654 5566777654322211 11 0111222222233
Q ss_pred HhCCCcEEEecccccccc
Q 002337 740 RSARPCVIFFDELDSLAP 757 (934)
Q Consensus 740 ~~~~p~vlfiDEid~l~~ 757 (934)
+...|.+|+||++..+.+
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 456799999999999985
No 223
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.13 E-value=5.5e-05 Score=84.52 Aligned_cols=38 Identities=29% Similarity=0.237 Sum_probs=30.7
Q ss_pred cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
.+..+.-+.|.||+|||||||+|++|+.+...-+.|..
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (359)
T 2yyz_A 25 EVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF 62 (359)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEE
Confidence 34445559999999999999999999998777666643
No 224
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.13 E-value=6.5e-05 Score=84.38 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=30.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+..+.-+.|.||+|||||||+|++|+.+...-+.|..
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 70 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEE
Confidence 3444459999999999999999999998777666543
No 225
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.11 E-value=0.0012 Score=68.01 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=29.4
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHHc---CCcEEEec
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVK 716 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~ 716 (934)
++.++.-++++||||+|||++++.++... +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67778889999999999999999998553 44555544
No 226
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.11 E-value=0.0023 Score=66.78 Aligned_cols=37 Identities=27% Similarity=0.202 Sum_probs=26.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHH--HH--hCCcEEEEec
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVA--RR--LGIHVVEYSC 430 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA--~e--lg~~~~~I~~ 430 (934)
+..+.-++|.||||+|||||++.++ .. .+...+.++.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 3455669999999999999999998 43 2344444443
No 227
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.10 E-value=0.00029 Score=71.74 Aligned_cols=35 Identities=29% Similarity=0.486 Sum_probs=29.1
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
...+..|+|+|++||||||+++.+|+.+|..++..
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 34456799999999999999999999999887654
No 228
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.08 E-value=4.6e-05 Score=84.97 Aligned_cols=37 Identities=24% Similarity=0.182 Sum_probs=30.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+..+.-+.|.||+|||||||+|++|+.+...-+.|..
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 74 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Confidence 4445559999999999999999999998777666643
No 229
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.05 E-value=0.00033 Score=72.33 Aligned_cols=42 Identities=21% Similarity=0.348 Sum_probs=32.8
Q ss_pred hcCCCCCCcceecCCCCCcchHHHHHHHHHc---------CCcEEEecCcc
Q 002337 678 SSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---------SLNFLSVKGPE 719 (934)
Q Consensus 678 ~~~~~~~~~iLl~GppGtGKT~lakalA~~~---------~~~~i~v~~~~ 719 (934)
..++.++.-+.|.||||+|||++++.++... +...+++++.+
T Consensus 19 ~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 19 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 3578888889999999999999999999854 22366666543
No 230
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.00 E-value=6.9e-05 Score=80.39 Aligned_cols=38 Identities=26% Similarity=0.278 Sum_probs=29.5
Q ss_pred cccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
.+.+..+.-+.|.||+|+|||||++++++.+...-+.|
T Consensus 31 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I 68 (266)
T 4g1u_C 31 SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGEC 68 (266)
T ss_dssp EEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEE
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence 34445555699999999999999999999886654444
No 231
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.94 E-value=0.00068 Score=67.20 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=29.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
.-|+|+|++|+||||+++.++..++..++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 458999999999999999999999988776654
No 232
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.91 E-value=0.00052 Score=68.60 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=28.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
+..|+|+|++||||||+++.+|..+|..++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45699999999999999999999999887754
No 233
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.88 E-value=0.0044 Score=68.50 Aligned_cols=151 Identities=15% Similarity=0.095 Sum_probs=89.4
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CC-cEEEecCccccccccchhhhhhHHHHHHHHh----CCCcEEEeccccc-
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SL-NFLSVKGPELINMYIGESEKNVRDIFQKARS----ARPCVIFFDELDS- 754 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~-~~i~v~~~~l~~~~~Gese~~v~~lf~~A~~----~~p~vlfiDEid~- 754 (934)
....|||||+|.||++.++.++..+ +. ++..+. +.| +..++++++.+.. ....|+++||++.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-------IDP--NTDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-------CCT--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-------ecC--CCCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 4578999999999999999997754 22 211111 112 2456777776653 3457999999988
Q ss_pred cccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC------CCChhhhCCCCcceeeeecCCCCHHHHH
Q 002337 755 LAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD------LIDPALLRPGRFDKLLYVGVNSDVSYRE 828 (934)
Q Consensus 755 l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~------~lD~allrpGRfd~~i~v~~Pp~~~~r~ 828 (934)
+.. ...+.|+..++... ...++|+++++ ++ .+-+++.+ |. ..+.+.. ++..+..
T Consensus 89 l~~-------------~~~~aLl~~le~p~--~~~~~il~~~~-~~~~~~~~k~~~~i~s--r~-~~~~~~~-l~~~~l~ 148 (343)
T 1jr3_D 89 PNA-------------AINEQLLTLTGLLH--DDLLLIVRGNK-LSKAQENAAWFTALAN--RS-VQVTCQT-PEQAQLP 148 (343)
T ss_dssp CCT-------------THHHHHHHHHTTCB--TTEEEEEEESC-CCTTTTTSHHHHHHTT--TC-EEEEECC-CCTTHHH
T ss_pred CCh-------------HHHHHHHHHHhcCC--CCeEEEEEcCC-CChhhHhhHHHHHHHh--Cc-eEEEeeC-CCHHHHH
Confidence 631 13345555555442 24455555543 32 34467776 54 4677763 5666777
Q ss_pred HHHHHHHhcCCCCcCC-CHHHHHhhCCCCCCHHHHHHHHHH
Q 002337 829 RVLKALTRKFKLLEDV-SLYSIAKKCPPNFTGADMYALCAD 868 (934)
Q Consensus 829 ~Il~~~~~~~~~~~~~-~l~~la~~~t~g~sgaDl~~l~~~ 868 (934)
.+++..+++.++.-+. .+..+++. +|+|+..+.++
T Consensus 149 ~~l~~~~~~~g~~i~~~a~~~l~~~-----~~gdl~~~~~e 184 (343)
T 1jr3_D 149 RWVAARAKQLNLELDDAANQVLCYC-----YEGNLLALAQA 184 (343)
T ss_dssp HHHHHHHHHTTCEECHHHHHHHHHS-----STTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-----hchHHHHHHHH
Confidence 7777777766543222 24555655 23455554443
No 234
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.88 E-value=0.0069 Score=60.65 Aligned_cols=140 Identities=24% Similarity=0.403 Sum_probs=90.9
Q ss_pred ceEEeecHhhhhhccccc--cc-eEEEeecCCCcceEEEEEEecCCCCCccccCCCCccCCCCCcccccCCCCCCCCccc
Q 002337 93 SALLGLSTCVLKQLSVTS--GS-LVLVKNAETTKQRIAQVVVLDPPTTRKQVCDGDVHSKHSSPTMLTFPSIHLPQDDME 169 (934)
Q Consensus 93 ~~~v~l~~~~l~~l~~~~--G~-~v~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (934)
.-=|.|+.|+|.+|.=.+ += .-.|+|. ...|.+.|=||+=
T Consensus 40 GdKI~LP~SaL~~L~~~~i~~Pm~F~l~n~--~~~r~th~GVlEF----------------------------------- 82 (190)
T 2yuj_A 40 GGKIIMPPSALDQLSRLNITYPMLFKLTNK--NSDRMTHCGVLEF----------------------------------- 82 (190)
T ss_dssp TTEEECCHHHHHHHHHTTCCSSCEEEEEET--TTTEEEEEEEEEC-----------------------------------
T ss_pred CCeEECcHHHHHHHHHCCCCcCeEEEEecC--CCCceEEEEEEEE-----------------------------------
Confidence 346889999999875332 11 2235553 3457778877642
Q ss_pred cccCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCceEEEEEEecCCCCCcceeeEEEeee
Q 002337 170 LLDRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKASLIKLGLQSVGQLPKYASHLRVSFVK 249 (934)
Q Consensus 170 ~~~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~p~~a~~~rv~~~~ 249 (934)
.-+++.+||++-++.||++..++. |.|.-+ ++ |-|+.+++
T Consensus 83 sA~EG~i~lP~wmm~~L~l~~gd~----------------------------------V~v~~~-~L-Pkgt~vkl---- 122 (190)
T 2yuj_A 83 VADEGICYLPHWMMQNLLLEEGGL----------------------------------VQVESV-NL-QVATYSKF---- 122 (190)
T ss_dssp CCBTTBEECCSHHHHHHTCCTTEE----------------------------------EEEEEE-CC-CCCSEEEE----
T ss_pred ecCCCeEEeCHHHHHhcCCCCCCE----------------------------------EEEEEe-ec-CCCcEEEE----
Confidence 124677899999999999998741 222322 44 35666555
Q ss_pred cCCCCccccccCCchhhhhhhHHHHHHHHHhhccCCCeeecCCEEEEecccCCCCccccccccccCCCCCceEEEEEEEE
Q 002337 250 IPECGTLESLKGSSAIEAEDRQEKIDLALHNYFEVDRYLARGDVFSVCINWNCSSMICIPCRQRLHRRSDNIIYFKVVAV 329 (934)
Q Consensus 250 ~p~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~f~~~r~~~~gd~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~ 329 (934)
=|....+ .+-.+.+.+++..|++|- .|.+||+|.|..+ ....+|+|.++
T Consensus 123 qP~~~~F--------l~i~npKavLE~~Lrnfs----tLT~Gd~I~I~~~-------------------~~~y~l~V~e~ 171 (190)
T 2yuj_A 123 QPQSPDF--------LDITNPKAVLENALRNFA----CLTTGDVIAINYN-------------------EKIYELRVMET 171 (190)
T ss_dssp EESSHHH--------HHSSCHHHHHHHHHTTCC----EECTTCEEEEESS-------------------SCEEEEEEEEE
T ss_pred EECCccc--------cccccHHHHHHHHHhcCc----ccccCCEEEEEeC-------------------CEEEEEEEEEE
Confidence 3332211 123455778888888533 6999999999843 57789999999
Q ss_pred ecCCCeEEEEeC
Q 002337 330 EPSEETVLRVNC 341 (934)
Q Consensus 330 ~~~~~~~~~vd~ 341 (934)
+|++ .+.++|+
T Consensus 172 kP~~-aV~IidT 182 (190)
T 2yuj_A 172 KPDK-AVSIIEC 182 (190)
T ss_dssp SSSS-SEECSSC
T ss_pred cCCC-eEEEEeC
Confidence 9964 4555554
No 235
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.82 E-value=0.00085 Score=66.15 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=26.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~ 426 (934)
+..|+|.||+||||||+++.+|+.++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 345999999999999999999999987544
No 236
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.80 E-value=0.00085 Score=73.91 Aligned_cols=80 Identities=19% Similarity=0.269 Sum_probs=54.2
Q ss_pred hcCCCCCCcceecCCCCCcchHHHHHHHHHc---------CCcEEEecCcccccc-----c---cch-------------
Q 002337 678 SSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---------SLNFLSVKGPELINM-----Y---IGE------------- 727 (934)
Q Consensus 678 ~~~~~~~~~iLl~GppGtGKT~lakalA~~~---------~~~~i~v~~~~l~~~-----~---~Ge------------- 727 (934)
..|+.++.-++++||||+|||+++..+|... +...++++...-+.. + .|-
T Consensus 101 ~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~ 180 (324)
T 2z43_A 101 AGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIR 180 (324)
T ss_dssp TTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE
T ss_pred CCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEe
Confidence 3578888889999999999999999998764 456777776542100 0 010
Q ss_pred ---hh---hhhHHHHHHHHh-CCCcEEEecccccccc
Q 002337 728 ---SE---KNVRDIFQKARS-ARPCVIFFDELDSLAP 757 (934)
Q Consensus 728 ---se---~~v~~lf~~A~~-~~p~vlfiDEid~l~~ 757 (934)
.+ ..+..+....+. ..+.+|+||.+..+..
T Consensus 181 ~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 181 AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 11 122334444555 6789999999998874
No 237
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.80 E-value=0.0016 Score=70.89 Aligned_cols=104 Identities=13% Similarity=0.236 Sum_probs=60.3
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHc-----CCcEEEecCcccccc----ccch--------hhhhhHHH-HH---
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELINM----YIGE--------SEKNVRDI-FQ--- 737 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~----~~Ge--------se~~v~~l-f~--- 737 (934)
.|+.++ -++++||||+|||+++-.++... +...++++..+-+.. -.|- .+.+..++ +.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 567777 68999999999999988775443 567888887543221 0110 11122233 22
Q ss_pred H---HHhCCCcEEEeccccccccCCCCC---CCCc-h--hHHHHHHhhhhhccCC
Q 002337 738 K---ARSARPCVIFFDELDSLAPARGAS---GDSG-G--VMDRVVSQMLAEIDGL 783 (934)
Q Consensus 738 ~---A~~~~p~vlfiDEid~l~~~r~~~---~~~~-~--~~~~v~~~lL~~ldg~ 783 (934)
. .+...|.+|++|-|..+.++..-. ++.. + ...|.+++.|..|-++
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ 157 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPY 157 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHH
Confidence 2 355689999999999998642211 1110 1 2346677766654433
No 238
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.79 E-value=0.0036 Score=69.70 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=50.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccc----------------cccchHHHHHHHHHHhhcC
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMAS----------------SERKTSAALAQAFNTAQSY 455 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~----------------~~g~~e~~L~~~f~~A~~~ 455 (934)
..+.-++|+||||+|||||+..+|..+ +..++.++....... .....+..+..+....+..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSG 138 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhc
Confidence 455669999999999999999999875 556777776642210 0111223333333333346
Q ss_pred CCEEEEEcchhhccc
Q 002337 456 SPTILLLRDFDVFRN 470 (934)
Q Consensus 456 ~P~IL~IDEID~L~~ 470 (934)
.+.+++||.+..+.+
T Consensus 139 ~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 139 VVDLIVVDSVAALVP 153 (356)
T ss_dssp CCSEEEEECTTTCCC
T ss_pred CCCeEEehHhhhhcC
Confidence 789999999998875
No 239
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.79 E-value=0.0011 Score=73.96 Aligned_cols=79 Identities=27% Similarity=0.399 Sum_probs=53.2
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccccccc----cc-----------hhhhhhHHHHH-HH
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINMY----IG-----------ESEKNVRDIFQ-KA 739 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~----~G-----------ese~~v~~lf~-~A 739 (934)
.|+.++.-++++||||+|||++|..+|... +..+++++..+-.... .| .+...+.++++ .+
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 468888889999999999999999987654 5677777764322110 11 11122233333 23
Q ss_pred HhCCCcEEEecccccccc
Q 002337 740 RSARPCVIFFDELDSLAP 757 (934)
Q Consensus 740 ~~~~p~vlfiDEid~l~~ 757 (934)
+...+.+|+||.+..+.+
T Consensus 138 ~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHTCCSEEEEECGGGCCC
T ss_pred hccCCCEEEEcCHHHhcc
Confidence 456789999999999875
No 240
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.76 E-value=0.00064 Score=68.25 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=30.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecC
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCH 431 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~ 431 (934)
..+.-++|.||||+||||+++.+++.++...+.++..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d 43 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD 43 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEccc
Confidence 4456699999999999999999999876666666554
No 241
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.75 E-value=0.0014 Score=64.97 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=29.7
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecC
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKG 717 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~ 717 (934)
+.-|+|.|+||+||||++++++..++.+++.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 3568999999999999999999999988887554
No 242
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.74 E-value=0.0011 Score=73.85 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=35.7
Q ss_pred HhhcCCCCCCcceecCCCCCcchHHHHHHHHHc---------CCcEEEecCcc
Q 002337 676 LFSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---------SLNFLSVKGPE 719 (934)
Q Consensus 676 ~~~~~~~~~~~iLl~GppGtGKT~lakalA~~~---------~~~~i~v~~~~ 719 (934)
++..++.++.-+.|+||||+|||++++.++... +...+++++.+
T Consensus 123 lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 123 LLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp HHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred HhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 345688888899999999999999999999876 23567777654
No 243
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.74 E-value=0.0015 Score=74.04 Aligned_cols=82 Identities=21% Similarity=0.265 Sum_probs=52.7
Q ss_pred hhcCCCCCCcceecCCCCCcchHHHHHHHHHc---------CCcEEEecCcccccc--------ccc-------------
Q 002337 677 FSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---------SLNFLSVKGPELINM--------YIG------------- 726 (934)
Q Consensus 677 ~~~~~~~~~~iLl~GppGtGKT~lakalA~~~---------~~~~i~v~~~~l~~~--------~~G------------- 726 (934)
+..|+.++.-++|+||||+|||+|++.++-.. +...+++++.+.+.. -+|
T Consensus 171 LgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~ 250 (400)
T 3lda_A 171 LGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYA 250 (400)
T ss_dssp TTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEE
T ss_pred hcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEe
Confidence 44688889999999999999999999776332 234777776542110 011
Q ss_pred -----h-hhhhhHHHHHHHHhCCCcEEEeccccccccC
Q 002337 727 -----E-SEKNVRDIFQKARSARPCVIFFDELDSLAPA 758 (934)
Q Consensus 727 -----e-se~~v~~lf~~A~~~~p~vlfiDEid~l~~~ 758 (934)
+ ....+..+...+....|.+|+||++-.+...
T Consensus 251 ~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 251 RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 0 0111223333444568999999999888753
No 244
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.74 E-value=0.00077 Score=67.69 Aligned_cols=33 Identities=27% Similarity=0.536 Sum_probs=27.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHH-hCCcEEE
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARR-LGIHVVE 427 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~e-lg~~~~~ 427 (934)
..+..|+|+|++||||||+++.+|.. +|.+++.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 34457999999999999999999999 6766554
No 245
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.73 E-value=0.0024 Score=66.33 Aligned_cols=77 Identities=12% Similarity=0.046 Sum_probs=49.1
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHH--h-------CCcEEEEecCccccc---------c--------------ccch
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARR--L-------GIHVVEYSCHNLMAS---------S--------------ERKT 441 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~e--l-------g~~~~~I~~~~L~~~---------~--------------~g~~ 441 (934)
+..+.-++|+||||+||||+++.+|.. + +...+.++..+.... . ...+
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 345566999999999999999999995 3 345677776542100 0 0001
Q ss_pred -H---HHHHHHHHHhhcCCCEEEEEcchhhccc
Q 002337 442 -S---AALAQAFNTAQSYSPTILLLRDFDVFRN 470 (934)
Q Consensus 442 -e---~~L~~~f~~A~~~~P~IL~IDEID~L~~ 470 (934)
. ..+..+.+......|.+++||++..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 1 1122233444456799999999987764
No 246
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.72 E-value=0.0007 Score=68.32 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=39.0
Q ss_pred CcceecCCCCCcchHHHHHHHHHc---CCcEEEecCc--------cccccccchh-----hhhhHHHHHHHHhCCCcEEE
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGP--------ELINMYIGES-----EKNVRDIFQKARSARPCVIF 748 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~--------~l~~~~~Ges-----e~~v~~lf~~A~~~~p~vlf 748 (934)
.-++++||+|+|||+++..++... +.+++.++.. .+.+ ..|.. -....++++.+. ..+.+|+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s-~~g~~~~~~~~~~~~~~~~~~~-~~~dvvi 81 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVS-HSGNGVEAHVIERPEEMRKYIE-EDTRGVF 81 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC-----CEECEEESSGGGGGGGCC-TTEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEe-cCCCceeeEEECCHHHHHHHhc-CCCCEEE
Confidence 456899999999999986665443 5555444321 0111 01110 012334444433 2467999
Q ss_pred ecccccc
Q 002337 749 FDELDSL 755 (934)
Q Consensus 749 iDEid~l 755 (934)
|||+..+
T Consensus 82 IDE~Q~~ 88 (184)
T 2orw_A 82 IDEVQFF 88 (184)
T ss_dssp ECCGGGS
T ss_pred EECcccC
Confidence 9999876
No 247
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.69 E-value=0.0011 Score=65.16 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=27.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEEe
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~I~ 429 (934)
-|+|.|++|+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4899999999999999999999998776543
No 248
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.66 E-value=0.0028 Score=67.09 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=32.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcc
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNL 433 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L 433 (934)
...+..|+|.|+||+||||+++.+++.++...+.++...+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3556779999999999999999999999866666666554
No 249
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.66 E-value=0.00081 Score=68.35 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=30.8
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
.+.++..|+|.||||+||||+++++|..++..++..+
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 4556678999999999999999999999999887654
No 250
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.64 E-value=0.0017 Score=70.37 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecC
Q 002337 374 DTVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCH 431 (934)
Q Consensus 374 ~~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~ 431 (934)
+..+.+..++..++... .....+.-|+|.||||+||||+++.++.+++..++.|++.
T Consensus 11 ~~~~~~~~~~~~~l~~~-~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D 67 (287)
T 1gvn_B 11 QFENRLNDNLEELIQGK-KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND 67 (287)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTH
T ss_pred HHHHHHHHHHHHHhccc-cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Confidence 45556666665555432 2234456799999999999999999999985455667653
No 251
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.62 E-value=0.00071 Score=72.27 Aligned_cols=69 Identities=14% Similarity=0.251 Sum_probs=42.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCc---EEEEecCcc---cc-------c-cccchHHHHHHHHHHhhcCCCEEEEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIH---VVEYSCHNL---MA-------S-SERKTSAALAQAFNTAQSYSPTILLL 462 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~---~~~I~~~~L---~~-------~-~~g~~e~~L~~~f~~A~~~~P~IL~I 462 (934)
+.-++|.||+|+||||+++++++.+... -+.+....+ .. . ..+.....++..+..+-...|-++++
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illl 104 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFV 104 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEe
Confidence 3449999999999999999999986432 122222111 00 0 00101123455566665568999999
Q ss_pred cch
Q 002337 463 RDF 465 (934)
Q Consensus 463 DEI 465 (934)
||.
T Consensus 105 DEp 107 (261)
T 2eyu_A 105 GEM 107 (261)
T ss_dssp SCC
T ss_pred CCC
Confidence 996
No 252
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.59 E-value=0.0018 Score=71.90 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=53.2
Q ss_pred hcCCCCCCcceecCCCCCcchHHHHHHHHHc---------CCcEEEecCcccccc-----c---cch-------------
Q 002337 678 SSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---------SLNFLSVKGPELINM-----Y---IGE------------- 727 (934)
Q Consensus 678 ~~~~~~~~~iLl~GppGtGKT~lakalA~~~---------~~~~i~v~~~~l~~~-----~---~Ge------------- 727 (934)
..|+.++.-++++||||+|||+++..+|... +...++++....+.. + .|-
T Consensus 116 gGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~ 195 (343)
T 1v5w_A 116 GGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYAR 195 (343)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEee
Confidence 3578888889999999999999999998863 456777776442110 0 010
Q ss_pred ---hh---hhhHHHHHHHHh--CCCcEEEecccccccc
Q 002337 728 ---SE---KNVRDIFQKARS--ARPCVIFFDELDSLAP 757 (934)
Q Consensus 728 ---se---~~v~~lf~~A~~--~~p~vlfiDEid~l~~ 757 (934)
.+ ..+..+....+. ..+.+|+||.+..+..
T Consensus 196 ~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 196 AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 11 112223344455 6789999999999874
No 253
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.59 E-value=0.0036 Score=64.40 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=23.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRL 421 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~el 421 (934)
+..+.-+.|+||||+|||||++.+++.+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445559999999999999999999965
No 254
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.59 E-value=0.0016 Score=65.13 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=27.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
.+.-|+|.|+||+||||+++.++..+|..++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 34569999999999999999999999876654
No 255
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.58 E-value=0.0012 Score=64.80 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=27.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
..|+|.|++||||||+++.+|..+|.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4699999999999999999999999887653
No 256
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.58 E-value=0.0017 Score=72.95 Aligned_cols=66 Identities=12% Similarity=0.111 Sum_probs=44.4
Q ss_pred cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHhhcCCCEEEEEcchhhccc
Q 002337 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLMASSERKTSAALAQAFNTAQSYSPTILLLRDFDVFRN 470 (934)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~ 470 (934)
.++.+..++|+||||+||||+++++++.++..++.+..++ ......+. ......++++|+++.+..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~------~~~~~~lg------~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL------DRLNFELG------VAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT------TTHHHHHG------GGTTCSCEEETTCCCSTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc------hhHHHHHH------HhcchhHHHHHHHHHHHH
Confidence 4566677999999999999999999999877655433321 01111122 112346679999998764
No 257
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.57 E-value=0.0015 Score=64.74 Aligned_cols=29 Identities=28% Similarity=0.574 Sum_probs=26.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
.|+|.|+||+||||+++.+|+.+|..++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48999999999999999999999987654
No 258
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.56 E-value=0.016 Score=68.05 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=54.0
Q ss_pred EEEEEcchhhccccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCCC--C
Q 002337 458 TILLLRDFDVFRNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSSE--G 535 (934)
Q Consensus 458 ~IL~IDEID~L~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~~--~ 535 (934)
.+++|||+..+.... ..++...|.++.. ......+-+|.+|.++. .
T Consensus 345 ivvVIDE~~~L~~~~------------~~~~~~~L~~Iar--------------------~GRa~GIhLIlaTQRPs~d~ 392 (574)
T 2iut_A 345 IVVVVDEFADMMMIV------------GKKVEELIARIAQ--------------------KARAAGIHLILATQRPSVDV 392 (574)
T ss_dssp EEEEESCCTTHHHHT------------CHHHHHHHHHHHH--------------------HCTTTTEEEEEEESCCCTTT
T ss_pred EEEEEeCHHHHhhhh------------hHHHHHHHHHHHH--------------------HHhhCCeEEEEEecCccccc
Confidence 699999999886511 1244444544432 11255788899999987 7
Q ss_pred CChhhhcccceEEEcCCCCHHHHHHHHH
Q 002337 536 LPPTIRRCFSHEISMGPLTEQQRVEMLS 563 (934)
Q Consensus 536 Ld~aLrrrF~~eI~i~~Pde~~R~~IL~ 563 (934)
|+..++..|...|.+...+..+-..|+.
T Consensus 393 I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 393 ITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp SCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred ccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 9999999999999999998888777764
No 259
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.55 E-value=0.0014 Score=65.21 Aligned_cols=31 Identities=32% Similarity=0.582 Sum_probs=27.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
+..|+|+|++|+||||+++.++..+|..++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 4569999999999999999999999877654
No 260
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.54 E-value=0.0018 Score=65.76 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=28.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCc
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHN 432 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~ 432 (934)
.+.-|+|.||+|+||||+++.+++.+|.. .++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~ 62 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADA 62 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCe--EEcccc
Confidence 34569999999999999999999999764 344443
No 261
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=96.54 E-value=0.0052 Score=53.37 Aligned_cols=51 Identities=29% Similarity=0.388 Sum_probs=39.2
Q ss_pred HHHHHHhhccCCCeeecCCEEEEecccCCCCccccccccccCCCCCceEEEEEEEEecCCCeEEEEeCCeeEEEE
Q 002337 274 IDLALHNYFEVDRYLARGDVFSVCINWNCSSMICIPCRQRLHRRSDNIIYFKVVAVEPSEETVLRVNCTKTALVL 348 (934)
Q Consensus 274 ~~~~l~~~f~~~r~~~~gd~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~vd~~~T~lv~ 348 (934)
+..+|+++|.. |||.+||+|.|++- .+.+.|+|++++|+ . ++| ...|.+..
T Consensus 29 ~~~~lk~~L~g-rPV~~GD~I~i~~~-------------------G~~i~F~Vv~t~P~--~-V~V-t~~T~I~i 79 (83)
T 2jv2_A 29 FVDVIRIKLQG-KTVRTGDVIGISIL-------------------GKEVKFKVVQAYPS--P-LRV-EDRTKITL 79 (83)
T ss_dssp HHHHHHHHHTT-SEECTTCEEEEEET-------------------TEEEEEEEEEEESS--S-EEC-CTTSEEEE
T ss_pred HHHHHHHHHCC-CCccCCCEEEEeeC-------------------CCEEEEEEEEecCc--c-EEE-CCCcEEEE
Confidence 47899999975 99999999999862 37899999999996 2 333 34455544
No 262
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.53 E-value=0.0075 Score=65.80 Aligned_cols=91 Identities=18% Similarity=0.207 Sum_probs=52.5
Q ss_pred HHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCccccc---------------
Q 002337 375 TVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMAS--------------- 436 (934)
Q Consensus 375 ~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~--------------- 436 (934)
..+.|.+++.+.. +-.+....+.-++++||+|+||||++..+|..+ |..+..+++......
T Consensus 83 ~~~~l~~~l~~~~-~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~ 161 (306)
T 1vma_A 83 LKEIILEILNFDT-KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGAT 161 (306)
T ss_dssp HHHHHHHHTCSCC-CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHhCCCC-CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCc
Confidence 3344444443322 222334556779999999999999999999876 445555554311000
Q ss_pred -----cccchHHHHHHHHHHhhcCCCEEEEEcchh
Q 002337 437 -----SERKTSAALAQAFNTAQSYSPTILLLRDFD 466 (934)
Q Consensus 437 -----~~g~~e~~L~~~f~~A~~~~P~IL~IDEID 466 (934)
..+.....+...+..+....+-++++|+.-
T Consensus 162 ~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 162 VISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred EEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 001112222334555555678899999764
No 263
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.53 E-value=0.0013 Score=65.63 Aligned_cols=30 Identities=40% Similarity=0.736 Sum_probs=26.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
.|+|.|+||+||||+++.+|..+|..++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 489999999999999999999999876643
No 264
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.51 E-value=0.0086 Score=67.01 Aligned_cols=76 Identities=11% Similarity=0.037 Sum_probs=49.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCcccccc----------------ccchHHHHHHHHHHhhcC
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASS----------------ERKTSAALAQAFNTAQSY 455 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~----------------~g~~e~~L~~~f~~A~~~ 455 (934)
..+.-++|+||||+|||+++..+|... |..++.++...-.... ....+..+..+....+..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~ 151 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSG 151 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcC
Confidence 455669999999999999999888764 5677777765322110 011122222222333345
Q ss_pred CCEEEEEcchhhccc
Q 002337 456 SPTILLLRDFDVFRN 470 (934)
Q Consensus 456 ~P~IL~IDEID~L~~ 470 (934)
.+.+|+||.+..+.+
T Consensus 152 ~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 152 AIDVVVVDSVAALTP 166 (366)
T ss_dssp CCSEEEEECTTTCCC
T ss_pred CCCEEEEeChHHhcc
Confidence 789999999998874
No 265
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.50 E-value=0.005 Score=68.52 Aligned_cols=76 Identities=14% Similarity=0.057 Sum_probs=49.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCcccccc----c------------cchHHHHHHHHHHhhcC
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASS----E------------RKTSAALAQAFNTAQSY 455 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~----~------------g~~e~~L~~~f~~A~~~ 455 (934)
..+.-++|+||||+|||||+..++... |..+..++...-.... . ...+..+..+...++..
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSG 138 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcC
Confidence 455669999999999999999998765 5566777655322110 0 01222233333334456
Q ss_pred CCEEEEEcchhhccc
Q 002337 456 SPTILLLRDFDVFRN 470 (934)
Q Consensus 456 ~P~IL~IDEID~L~~ 470 (934)
.|.+++||++..+.+
T Consensus 139 ~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 139 ALDIIVIDSVAALVP 153 (349)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcChHhhcc
Confidence 799999999998874
No 266
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.49 E-value=0.0042 Score=61.52 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=18.4
Q ss_pred CCCceEEEECCCCCcHHHHHH
Q 002337 395 KFRVAVLLHGLPGCGKRTVVR 415 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLar 415 (934)
..+.-++|+||||+||||+++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 445559999999999999999
No 267
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.46 E-value=0.0013 Score=65.70 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=29.8
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
+..|+|.||||+|||++++.+|..++.+|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 467999999999999999999999999988664
No 268
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.46 E-value=0.0022 Score=63.38 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=25.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~ 426 (934)
+..++|.||+|+||||+++.+++.+|..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 456999999999999999999999976443
No 269
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.45 E-value=0.0022 Score=66.11 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=27.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
.+..|+|.|+||+||||+++.+|..++..++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 44569999999999999999999999976544
No 270
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.45 E-value=0.0032 Score=70.29 Aligned_cols=68 Identities=21% Similarity=0.371 Sum_probs=44.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhC----CcEEEEecC-cc--------cc-ccccchHHHHHHHHHHhhcCCCEEEEEcc
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLG----IHVVEYSCH-NL--------MA-SSERKTSAALAQAFNTAQSYSPTILLLRD 464 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg----~~~~~I~~~-~L--------~~-~~~g~~e~~L~~~f~~A~~~~P~IL~IDE 464 (934)
.+++.||+|+||||+++++++.+. -.++.+.-+ ++ +. ...+.....+...+..|-...|-++++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 499999999999999999999873 334433221 11 10 01111112344567777778999999999
Q ss_pred hh
Q 002337 465 FD 466 (934)
Q Consensus 465 ID 466 (934)
+-
T Consensus 205 p~ 206 (356)
T 3jvv_A 205 MR 206 (356)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 271
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.44 E-value=0.002 Score=65.37 Aligned_cols=33 Identities=39% Similarity=0.544 Sum_probs=28.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
.+..|+|.|+||+||||+++.++..+|..++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 345699999999999999999999999876543
No 272
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.43 E-value=0.0018 Score=64.52 Aligned_cols=29 Identities=38% Similarity=0.604 Sum_probs=25.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~ 426 (934)
..|+|.|+|||||||+++.+|+.+|..++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 45999999999999999999999987554
No 273
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.40 E-value=0.0048 Score=62.48 Aligned_cols=24 Identities=42% Similarity=0.645 Sum_probs=21.5
Q ss_pred CcceecCCCCCcchHHHHHHHHHc
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC 708 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~ 708 (934)
..+.|.||+|+||||+++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 457899999999999999999875
No 274
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.39 E-value=0.0027 Score=62.48 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL 421 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el 421 (934)
+.-+.|.||+|+|||||+|++++.+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3349999999999999999999998
No 275
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.018 Score=58.48 Aligned_cols=138 Identities=18% Similarity=0.328 Sum_probs=87.5
Q ss_pred EEeecHhhhhhccccc---cceEEEeecCCCcceEEEEEEecCCCCCccccCCCCccCCCCCcccccCCCCCCCCccccc
Q 002337 95 LLGLSTCVLKQLSVTS---GSLVLVKNAETTKQRIAQVVVLDPPTTRKQVCDGDVHSKHSSPTMLTFPSIHLPQDDMELL 171 (934)
Q Consensus 95 ~v~l~~~~l~~l~~~~---G~~v~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (934)
=|.|+.|+|.+|.=.+ -=.-.|+|. ...|.+.|=||+= .-
T Consensus 47 KIiLP~SaL~~L~~~~i~~Pm~F~l~n~--~~~~~th~GVlEF-----------------------------------~A 89 (208)
T 1zc1_A 47 KIFLPPSALSKLSMLNIRYPMLFKLTAN--ETGRVTHGGVLEF-----------------------------------IA 89 (208)
T ss_dssp EEEECHHHHHHHHHTTCCSSCCEEEECT--TTCCEEEEEEEEE-----------------------------------CC
T ss_pred eEECCHHHHHHHHHCCCCcCEEEEEEeC--CCCCEEEEEEEEE-----------------------------------Ec
Confidence 6889999999886422 112234442 2345666666522 23
Q ss_pred cCceEEeCHhhHhhccCCcccchhheecCccceeEEEEEecCCCCCCCCCCCceEEEEEEecCCCCCcceeeEEEeeecC
Q 002337 172 DRQVAYLSPLLAFNLDLHISSLKFLVHQGKEVLESLFIAKVDDGTSGQDGKASLIKLGLQSVGQLPKYASHLRVSFVKIP 251 (934)
Q Consensus 172 ~~~~~~lsp~~~~nL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~p~~a~~~rv~~~~~p 251 (934)
+++.+||++-++.||++..+++ |+|... ++ |-|+.+++ =|
T Consensus 90 ~EG~v~lP~wmm~~L~l~~gd~--------------------------------V~i~~~---~L-Pkgt~vkl----qP 129 (208)
T 1zc1_A 90 EEGRVYLPQWMMETLGIQPGSL--------------------------------LQISST---DV-PLGQFVKL----EP 129 (208)
T ss_dssp SSCEEEECHHHHHHHTCCTTCE--------------------------------EEEEEE---EC-CCCSEEEE----EC
T ss_pred CCCeEEcCHHHHHhcCCCCCCE--------------------------------EEEEEe---Ec-CCCCEEEE----eE
Confidence 5688999999999999999752 122222 33 35665555 34
Q ss_pred CCCccccccCCchhhhhhhHHHHHHHHHhhccCCCeeecCCEEEEecccCCCCccccccccccCCCCCceEEEEEEEEec
Q 002337 252 ECGTLESLKGSSAIEAEDRQEKIDLALHNYFEVDRYLARGDVFSVCINWNCSSMICIPCRQRLHRRSDNIIYFKVVAVEP 331 (934)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~f~~~r~~~~gd~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~ 331 (934)
....+ .+-.+.+.+++..|++ | -.|.+||+|.|..+ ....+|+|.+++|
T Consensus 130 ~~~~F--------ldi~npKavLE~~LRn-f---stLT~Gd~I~i~~~-------------------~~~y~l~V~e~kP 178 (208)
T 1zc1_A 130 QSVDF--------LDISDPKAVLENVLRN-F---STLTVDDVIEISYN-------------------GKTFKIKILEVKP 178 (208)
T ss_dssp CHHHH--------HTSSCHHHHHHHHHHH-C---SCEESSSEEEEEET-------------------TEEEEEEEEEEEC
T ss_pred Ccccc--------ccccCHHHHHHHHhhc-C---ccccCCCEEEEEeC-------------------CEEEEEEEEEEcC
Confidence 32211 1123456788888986 4 37999999999853 5778999999999
Q ss_pred CC--CeEEEEe
Q 002337 332 SE--ETVLRVN 340 (934)
Q Consensus 332 ~~--~~~~~vd 340 (934)
+. ..+.++|
T Consensus 179 ~~~~~aV~Iid 189 (208)
T 1zc1_A 179 ESSSKSICVIE 189 (208)
T ss_dssp SSTTCEECCSS
T ss_pred CCCCceEEEEe
Confidence 74 2444444
No 276
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.36 E-value=0.0021 Score=68.09 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=28.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
-++|.||||+||||+++.+|++++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 37999999999999999999999988776554
No 277
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.35 E-value=0.0023 Score=68.31 Aligned_cols=72 Identities=25% Similarity=0.408 Sum_probs=47.2
Q ss_pred CCCCCcceecCCCCCcchHHHHHHHHHcC----CcEEEecCccc---c--------ccccchhhhhhHHHHHHHHhCCCc
Q 002337 681 LRKRSGVLLYGPPGTGKTLLAKAVATECS----LNFLSVKGPEL---I--------NMYIGESEKNVRDIFQKARSARPC 745 (934)
Q Consensus 681 ~~~~~~iLl~GppGtGKT~lakalA~~~~----~~~i~v~~~~l---~--------~~~~Gese~~v~~lf~~A~~~~p~ 745 (934)
+.++.-+++.||+|+||||++++++.... ..++. .+..+ . ...+|.....++..+..+-...|.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~-~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ 100 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT-IEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPD 100 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE-EESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCS
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE-cCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 55677789999999999999999987652 23322 22111 0 011121223456667777677899
Q ss_pred EEEecccc
Q 002337 746 VIFFDELD 753 (934)
Q Consensus 746 vlfiDEid 753 (934)
+|++||.-
T Consensus 101 illlDEp~ 108 (261)
T 2eyu_A 101 VIFVGEMR 108 (261)
T ss_dssp EEEESCCC
T ss_pred EEEeCCCC
Confidence 99999973
No 278
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.33 E-value=0.0028 Score=64.30 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=26.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
.-|+|.|++|+||||+++.+++.+|..++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 459999999999999999999999876554
No 279
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.33 E-value=0.0021 Score=64.47 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=27.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
.-|+|.|++||||||+++.+|..+|..++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4599999999999999999999999865543
No 280
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.31 E-value=0.002 Score=76.87 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=31.0
Q ss_pred CccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 389 PSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 389 p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
.-.+.++++..+.|+||+|+|||||++.+++...+.-+.|
T Consensus 361 ~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 400 (582)
T 3b5x_A 361 HVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400 (582)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE
Confidence 3344456666699999999999999999999886654444
No 281
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.31 E-value=0.0042 Score=69.30 Aligned_cols=72 Identities=22% Similarity=0.372 Sum_probs=48.6
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHc----CCcEEEecCc-ccc---------ccccchhhhhhHHHHHHHHhCCCcEE
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATEC----SLNFLSVKGP-ELI---------NMYIGESEKNVRDIFQKARSARPCVI 747 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~----~~~~i~v~~~-~l~---------~~~~Gese~~v~~lf~~A~~~~p~vl 747 (934)
.++..+++.||+|+||||+.++++... +..++.+..+ ++. ...++.....+.+.+..|-...|.+|
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 345578899999999999999998765 3445544322 111 11122222345667778888999999
Q ss_pred Eecccc
Q 002337 748 FFDELD 753 (934)
Q Consensus 748 fiDEid 753 (934)
++||.-
T Consensus 201 llDEp~ 206 (356)
T 3jvv_A 201 LVGEMR 206 (356)
T ss_dssp EESCCC
T ss_pred ecCCCC
Confidence 999983
No 282
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.30 E-value=0.0095 Score=61.84 Aligned_cols=41 Identities=32% Similarity=0.409 Sum_probs=31.5
Q ss_pred hhcCCCCCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecC
Q 002337 677 FSSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKG 717 (934)
Q Consensus 677 ~~~~~~~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~ 717 (934)
+..|+.++.-++++||||+|||+++..++... +...++++.
T Consensus 16 l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 16 LHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 35678888899999999999999988776542 455665554
No 283
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.30 E-value=0.0046 Score=62.74 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=28.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHN 432 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~ 432 (934)
+.-|.|.||+||||||+++.+|+.+ |...+.++..+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 4459999999999999999999998 55544555443
No 284
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.30 E-value=0.0027 Score=62.35 Aligned_cols=29 Identities=41% Similarity=0.726 Sum_probs=26.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
.|+|.|++|+||||+++.++..+|..++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 48999999999999999999999987654
No 285
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.29 E-value=0.0017 Score=65.12 Aligned_cols=35 Identities=37% Similarity=0.533 Sum_probs=30.0
Q ss_pred CCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEe
Q 002337 681 LRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 715 (934)
Q Consensus 681 ~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v 715 (934)
+..+.-|+|.|+||+||||+++.++..++..++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 44566789999999999999999999998877764
No 286
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.28 E-value=0.016 Score=63.15 Aligned_cols=75 Identities=7% Similarity=0.038 Sum_probs=47.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh-----CCcEEEEecCcccccc----------------ccchHHHHHHHHHH--
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRL-----GIHVVEYSCHNLMASS----------------ERKTSAALAQAFNT-- 451 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~el-----g~~~~~I~~~~L~~~~----------------~g~~e~~L~~~f~~-- 451 (934)
..+ -++++||||+|||||+-.++... |..++.|+..+-.... ....+...-.+.+.
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~ 105 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLD 105 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHH
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHH
Confidence 444 48999999999999977766543 5677888876422100 01112220112222
Q ss_pred -hhcCCCEEEEEcchhhccc
Q 002337 452 -AQSYSPTILLLRDFDVFRN 470 (934)
Q Consensus 452 -A~~~~P~IL~IDEID~L~~ 470 (934)
.+...|.+++||-|..+.+
T Consensus 106 ~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 106 AIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp TCCTTCCEEEEEECSTTCBC
T ss_pred HhhccCceEEEEeccccccc
Confidence 3456799999999999975
No 287
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.28 E-value=0.003 Score=63.12 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=25.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~ 426 (934)
.-|+|.|+||+||||+++.++..+|..++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 45899999999999999999999987654
No 288
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.28 E-value=0.002 Score=62.95 Aligned_cols=29 Identities=28% Similarity=0.682 Sum_probs=25.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
-|+|.||||+||||+++.+ ..+|..++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4899999999999999999 8888876543
No 289
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.28 E-value=0.035 Score=64.67 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=35.3
Q ss_pred ccEEEEEecCCCC--CCChhhhcccceEEEcCCCCHHHHHHHHHH
Q 002337 522 QQVLLVAAADSSE--GLPPTIRRCFSHEISMGPLTEQQRVEMLSQ 564 (934)
Q Consensus 522 ~~ViVIatTn~~~--~Ld~aLrrrF~~eI~i~~Pde~~R~~IL~~ 564 (934)
..+-+|.+|.++. .++..++..|...|.+...++.+...|+..
T Consensus 331 ~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 331 AGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp GTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHSS
T ss_pred CCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcCC
Confidence 3677788888886 588889888988999999999888887753
No 290
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.26 E-value=0.0042 Score=61.59 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=19.8
Q ss_pred CCCCCcceecCCCCCcchHHHHH
Q 002337 681 LRKRSGVLLYGPPGTGKTLLAKA 703 (934)
Q Consensus 681 ~~~~~~iLl~GppGtGKT~laka 703 (934)
+.++.-+.|.||+|+||||++++
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 45567789999999999999994
No 291
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.25 E-value=0.0015 Score=65.38 Aligned_cols=40 Identities=28% Similarity=0.347 Sum_probs=32.9
Q ss_pred CCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccc
Q 002337 681 LRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 720 (934)
Q Consensus 681 ~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l 720 (934)
+.++..+.|.||||+||||+++.++...+...+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4556778999999999999999999987777777776544
No 292
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.24 E-value=0.024 Score=66.54 Aligned_cols=73 Identities=16% Similarity=0.287 Sum_probs=52.7
Q ss_pred cEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC--CCChhhhCCCCcceeeeecCCC
Q 002337 745 CVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD--LIDPALLRPGRFDKLLYVGVNS 822 (934)
Q Consensus 745 ~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~--~lD~allrpGRfd~~i~v~~Pp 822 (934)
.+|+|||+..+...- .......+.++..+ ...-+|.+|.+|.||. .|+..++. -|...|.+.+ .
T Consensus 345 ivvVIDE~~~L~~~~------~~~~~~~L~~Iar~-----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv-~ 410 (574)
T 2iut_A 345 IVVVVDEFADMMMIV------GKKVEELIARIAQK-----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQV-S 410 (574)
T ss_dssp EEEEESCCTTHHHHT------CHHHHHHHHHHHHH-----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECC-S
T ss_pred EEEEEeCHHHHhhhh------hHHHHHHHHHHHHH-----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEc-C
Confidence 689999999886421 12234455566554 2345799999999998 78888877 7889999998 6
Q ss_pred CHHHHHHHH
Q 002337 823 DVSYRERVL 831 (934)
Q Consensus 823 ~~~~r~~Il 831 (934)
+......|+
T Consensus 411 s~~Dsr~IL 419 (574)
T 2iut_A 411 SKIDSRTIL 419 (574)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHhc
Confidence 666666666
No 293
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.20 E-value=0.0026 Score=63.21 Aligned_cols=35 Identities=37% Similarity=0.638 Sum_probs=30.1
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
..+..|+|.|+||+|||++++.++..++..++..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 34567999999999999999999999988877653
No 294
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.19 E-value=0.049 Score=56.47 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=25.0
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEec
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVK 716 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~ 716 (934)
.-++++.|+||+|||+++-.+|..+ |..+..+.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3468999999999999998887664 55554333
No 295
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.18 E-value=0.024 Score=58.86 Aligned_cols=71 Identities=11% Similarity=0.146 Sum_probs=42.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCc-------cccccccch-----HHHHHHHHHHhhc----CCCE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHN-------LMASSERKT-----SAALAQAFNTAQS----YSPT 458 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~-------L~~~~~g~~-----e~~L~~~f~~A~~----~~P~ 458 (934)
.-++++|++|+||||++..++..+ |..++.+.... +.+. .|.. .....++++.+.. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 348899999999999988887766 55666553221 1111 1100 0112234444433 3478
Q ss_pred EEEEcchhhcc
Q 002337 459 ILLLRDFDVFR 469 (934)
Q Consensus 459 IL~IDEID~L~ 469 (934)
+++|||+..+.
T Consensus 92 vViIDEaQ~l~ 102 (223)
T 2b8t_A 92 VIGIDEVQFFD 102 (223)
T ss_dssp EEEECSGGGSC
T ss_pred EEEEecCccCc
Confidence 99999998553
No 296
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.17 E-value=0.0028 Score=62.05 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=26.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
.|+|.|++|+||||+++.++..+|..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48999999999999999999999987664
No 297
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.17 E-value=0.0046 Score=61.40 Aligned_cols=35 Identities=34% Similarity=0.408 Sum_probs=30.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSC 430 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~ 430 (934)
.+..|.|.|++|+||||+++.+++.+ |.+++.++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 34568999999999999999999998 888887764
No 298
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.17 E-value=0.0031 Score=62.84 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=23.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLG 422 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg 422 (934)
.-|+|.|++|+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999987
No 299
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.16 E-value=0.0027 Score=63.90 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=26.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
.-|+|.|++|+||||+++.++..+|..++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 359999999999999999999999865543
No 300
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.16 E-value=0.046 Score=60.17 Aligned_cols=143 Identities=13% Similarity=0.036 Sum_probs=81.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CC-cEEEEecCccccccccchHHHHHHHHHHhh----cCCCEEEEEcchhh-c
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---GI-HVVEYSCHNLMASSERKTSAALAQAFNTAQ----SYSPTILLLRDFDV-F 468 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g~-~~~~I~~~~L~~~~~g~~e~~L~~~f~~A~----~~~P~IL~IDEID~-L 468 (934)
..+||+||+|.||++.++.+++.+ +. .+..+... + . ..++++++.+. ....-+++|||++. +
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~---~---~~~~~l~~~~~~~plf~~~kvvii~~~~~kl 89 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---P---N---TDWNAIFSLCQAMSLFASRQTLLLLLPENGP 89 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---T---T---CCHHHHHHHHHHHHHCCSCEEEEEECCSSCC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---C---C---CCHHHHHHHhcCcCCccCCeEEEEECCCCCC
Confidence 458999999999999999998876 32 21112111 1 1 22344444433 22457999999886 5
Q ss_pred cccccCCCCCCccccchHHHHHHHHHhcCCCccccccccCCCCchhhhhhhhcccEEEEEecCCC------CCCChhhhc
Q 002337 469 RNLVSNESLPNDQVGLSSEVASVIREFTEPSAEDEDEESHGYFPVKEIEKICRQQVLLVAAADSS------EGLPPTIRR 542 (934)
Q Consensus 469 ~~~~~~~~~~~d~~~~~~ev~~~L~~ll~~~~~~~~~~~~g~~~~~~~~~~~~~~ViVIatTn~~------~~Ld~aLrr 542 (934)
.. .....|..+++.. ..+.++++.++ .+ ..+.+.+.+
T Consensus 90 ~~----------------~~~~aLl~~le~p--------------------~~~~~~il~~~-~~~~~~~~~k~~~~i~s 132 (343)
T 1jr3_D 90 NA----------------AINEQLLTLTGLL--------------------HDDLLLIVRGN-KLSKAQENAAWFTALAN 132 (343)
T ss_dssp CT----------------THHHHHHHHHTTC--------------------BTTEEEEEEES-CCCTTTTTSHHHHHHTT
T ss_pred Ch----------------HHHHHHHHHHhcC--------------------CCCeEEEEEcC-CCChhhHhhHHHHHHHh
Confidence 32 1122233443311 12334444444 43 235667777
Q ss_pred ccceEEEcCCCCHHHHHHHHHHhccccccccCCCCchHHHHHHHhhcCC
Q 002337 543 CFSHEISMGPLTEQQRVEMLSQLLQPVSELTSDTGSEEFVKDIIGQTSG 591 (934)
Q Consensus 543 rF~~eI~i~~Pde~~R~~IL~~ll~~~~~l~~d~~~~~~L~~la~~t~G 591 (934)
|.. .+.+.+++..+....++..++.... .++ ...++.++..+.|
T Consensus 133 r~~-~~~~~~l~~~~l~~~l~~~~~~~g~---~i~-~~a~~~l~~~~~g 176 (343)
T 1jr3_D 133 RSV-QVTCQTPEQAQLPRWVAARAKQLNL---ELD-DAANQVLCYCYEG 176 (343)
T ss_dssp TCE-EEEECCCCTTHHHHHHHHHHHHTTC---EEC-HHHHHHHHHSSTT
T ss_pred Cce-EEEeeCCCHHHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHhch
Confidence 764 7889999999988888877754322 122 3345556655443
No 301
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.15 E-value=0.0025 Score=63.27 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=22.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~ 426 (934)
.-|+|.|+||+||||+++.++..++..++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45999999999999999999999998766
No 302
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.14 E-value=0.0027 Score=65.00 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=26.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
.|+|.||||+||||+++.++.++|..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 389999999999999999999998776543
No 303
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.13 E-value=0.0055 Score=64.80 Aligned_cols=39 Identities=26% Similarity=0.440 Sum_probs=32.5
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccc
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 720 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l 720 (934)
..+..++|.|+||+||||+++.++..++..++.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345678999999999999999999999876777776554
No 304
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.13 E-value=0.0039 Score=64.20 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=25.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~ 426 (934)
..|.|.||+||||||+++.+++.+|.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 35899999999999999999999987554
No 305
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.11 E-value=0.0035 Score=63.51 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=27.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
+.-|+|.|++||||||+++.++..+|..++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 34699999999999999999999998755543
No 306
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.11 E-value=0.0027 Score=65.13 Aligned_cols=30 Identities=33% Similarity=0.574 Sum_probs=26.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
.|+|.||||+||||+++.++.++|..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 389999999999999999999998766544
No 307
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.11 E-value=0.0032 Score=61.90 Aligned_cols=31 Identities=26% Similarity=0.669 Sum_probs=27.1
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLS 714 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~ 714 (934)
+..+.|.||+|+||||+++.+|..++..++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 4578999999999999999999999876654
No 308
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.09 E-value=0.02 Score=59.29 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=27.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecC
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCH 431 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~ 431 (934)
+..+.-++|+||||+||||++..+|... +..++.++..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3455669999999999999988776653 4555655543
No 309
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.09 E-value=0.0028 Score=62.51 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHH-HhCC
Q 002337 398 VAVLLHGLPGCGKRTVVRYVAR-RLGI 423 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~-elg~ 423 (934)
.-|+|.|+||+||||+++.++. .++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~ 29 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF 29 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCc
Confidence 3589999999999999999998 4543
No 310
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.06 E-value=0.0021 Score=72.19 Aligned_cols=72 Identities=15% Similarity=0.304 Sum_probs=44.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC----cEEEEecC-cc--------ccc-cccchHHHHHHHHHHhhcCCCEEE
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGI----HVVEYSCH-NL--------MAS-SERKTSAALAQAFNTAQSYSPTIL 460 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~----~~~~I~~~-~L--------~~~-~~g~~e~~L~~~f~~A~~~~P~IL 460 (934)
..+..+++.||+|+||||+++++++.+.. .++.+..+ ++ +.. ..+.....+...+..+....|.++
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 44556999999999999999999998642 23333221 10 100 001011233455666666789999
Q ss_pred EEcchh
Q 002337 461 LLRDFD 466 (934)
Q Consensus 461 ~IDEID 466 (934)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999973
No 311
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.06 E-value=0.011 Score=66.79 Aligned_cols=77 Identities=9% Similarity=0.001 Sum_probs=47.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh---------CCcEEEEecCcccccc--------cc-----------------
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRL---------GIHVVEYSCHNLMASS--------ER----------------- 439 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~el---------g~~~~~I~~~~L~~~~--------~g----------------- 439 (934)
+..+.-++|+||||+|||||++.+|-.. +...+.++..+..... .+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC
Confidence 4556679999999999999999776432 2346777765421100 00
Q ss_pred --chHHHHHHHHHHhhcCCCEEEEEcchhhccc
Q 002337 440 --KTSAALAQAFNTAQSYSPTILLLRDFDVFRN 470 (934)
Q Consensus 440 --~~e~~L~~~f~~A~~~~P~IL~IDEID~L~~ 470 (934)
.....+..+........|.+++||++-.+..
T Consensus 255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 0011223333334446799999999987764
No 312
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.05 E-value=0.0045 Score=61.72 Aligned_cols=31 Identities=29% Similarity=0.420 Sum_probs=26.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
+.-|+|.|++||||||+++.++..+|..++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 3469999999999999999999999876554
No 313
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.05 E-value=0.0021 Score=67.47 Aligned_cols=39 Identities=23% Similarity=0.144 Sum_probs=31.8
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+.+..+.-+.|.||+|+|||||++++++.+.+.-++|..
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 64 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYI 64 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEE
Confidence 334555569999999999999999999998887776654
No 314
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.04 E-value=0.0029 Score=63.43 Aligned_cols=34 Identities=41% Similarity=0.629 Sum_probs=29.0
Q ss_pred CCCcceecCCCCCcchHHHHHHHHH-cCCcEEEec
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATE-CSLNFLSVK 716 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~-~~~~~i~v~ 716 (934)
.+..|+|.|+||+|||++++.++.. ++.+++..+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 3567999999999999999999998 687777554
No 315
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.04 E-value=0.003 Score=65.42 Aligned_cols=30 Identities=23% Similarity=0.497 Sum_probs=26.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
..|+|.|+|||||||+++.+|..+|..++.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 459999999999999999999999876554
No 316
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.04 E-value=0.005 Score=64.14 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=27.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
+..|+|.|+|||||||+++.+|.+++..++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3469999999999999999999999976554
No 317
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.04 E-value=0.0065 Score=66.20 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=26.7
Q ss_pred cccCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 002337 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRL 421 (934)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTtLaralA~el 421 (934)
.+....+.-++|.||+|+||||+++.+|+.+
T Consensus 94 ~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 94 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3445667789999999999999999999987
No 318
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.03 E-value=0.0038 Score=65.70 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=27.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
.+..|+|.||||+||||+++.++.++|...+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 44569999999999999999999999876554
No 319
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.00 E-value=0.0033 Score=61.52 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=27.6
Q ss_pred cceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
-|+|.||||+||||+++.++..++..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998887654
No 320
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.00 E-value=0.0031 Score=62.38 Aligned_cols=30 Identities=37% Similarity=0.610 Sum_probs=27.3
Q ss_pred cceecCCCCCcchHHHHHHHHHcCCcEEEe
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECSLNFLSV 715 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~~~~i~v 715 (934)
.|+|.||||+|||++++++|..++.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 689999999999999999999999887754
No 321
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.00 E-value=0.005 Score=62.97 Aligned_cols=36 Identities=31% Similarity=0.333 Sum_probs=28.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC---CcEEEEec
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLG---IHVVEYSC 430 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg---~~~~~I~~ 430 (934)
+.+.-|.|.||+|+|||||++.+++.+. .....|..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~ 58 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPM 58 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEec
Confidence 3455699999999999999999999985 34555543
No 322
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.00 E-value=0.0053 Score=63.61 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=29.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccc
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLM 434 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~ 434 (934)
+.++-|+|.||||+||+|.++.||..+|.. .|+..+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdll 64 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLL 64 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHH
Confidence 344568899999999999999999999864 45544443
No 323
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.99 E-value=0.0054 Score=61.75 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=22.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEY 428 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g~~~~~I 428 (934)
.-++++||+|+||||++..++..+ |..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 347899999999999986666543 5554443
No 324
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.96 E-value=0.002 Score=67.03 Aligned_cols=39 Identities=23% Similarity=0.108 Sum_probs=31.2
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+.+..+.-+.|.||+|+|||||++++++.+.+.-+.|..
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 63 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 334555559999999999999999999998777666643
No 325
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.95 E-value=0.0036 Score=68.62 Aligned_cols=37 Identities=32% Similarity=0.490 Sum_probs=32.5
Q ss_pred CcceecCCCCCcchHHHHHHHHHcCCcEEEecCcccc
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELI 721 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~ 721 (934)
..+++.||+|+|||++++.+|..++..+++++.-.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy 42 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIY 42 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTB
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhh
Confidence 4688999999999999999999999999998865544
No 326
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.95 E-value=0.011 Score=64.86 Aligned_cols=77 Identities=12% Similarity=0.098 Sum_probs=50.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh---------CCcEEEEecCccccc--------ccc----------------c
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRL---------GIHVVEYSCHNLMAS--------SER----------------K 440 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~el---------g~~~~~I~~~~L~~~--------~~g----------------~ 440 (934)
+..+.-++|+||||+|||+++..+|... +..++.++....+.. ..+ .
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 3556679999999999999999999875 456777776642100 000 0
Q ss_pred hH---HHHHHHHHHhhc-CCCEEEEEcchhhccc
Q 002337 441 TS---AALAQAFNTAQS-YSPTILLLRDFDVFRN 470 (934)
Q Consensus 441 ~e---~~L~~~f~~A~~-~~P~IL~IDEID~L~~ 470 (934)
.+ ..+..+....+. ..+.+++||.+..+..
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 11 122333334444 6789999999998864
No 327
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.95 E-value=0.0066 Score=72.12 Aligned_cols=100 Identities=22% Similarity=0.328 Sum_probs=57.1
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCcccccc----ccchhhhhhHHHHHHH---------HhCCCcEE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELINM----YIGESEKNVRDIFQKA---------RSARPCVI 747 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~----~~Gese~~v~~lf~~A---------~~~~p~vl 747 (934)
...+++.||||||||+++++++..+ +..++.+..+.-... ..|.....+..++... ......+|
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvl 283 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLL 283 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEE
Confidence 4678899999999999999997654 455554432211111 1111112222222110 11235799
Q ss_pred EeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC
Q 002337 748 FFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD 800 (934)
Q Consensus 748 fiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~ 800 (934)
++||+..+. ...+..|+..+. ....++++|-.+...
T Consensus 284 IIDEasml~-------------~~~~~~Ll~~~~----~~~~lilvGD~~QL~ 319 (574)
T 3e1s_A 284 IVDEVSMMG-------------DALMLSLLAAVP----PGARVLLVGDTDQLP 319 (574)
T ss_dssp EECCGGGCC-------------HHHHHHHHTTSC----TTCEEEEEECTTSCC
T ss_pred EEcCccCCC-------------HHHHHHHHHhCc----CCCEEEEEecccccC
Confidence 999997663 235566665543 245788888776643
No 328
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.94 E-value=0.0032 Score=63.82 Aligned_cols=29 Identities=38% Similarity=0.587 Sum_probs=25.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
.|.|.|++||||||+++.+++ +|..++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 489999999999999999999 88766544
No 329
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.94 E-value=0.0031 Score=69.86 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=34.2
Q ss_pred HHHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 375 TVKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 375 ~~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
.++.+...+...+.++. ..+|+|+|++|+||||+++++|+.++..++.
T Consensus 7 L~~~il~~l~~~i~~g~-----~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 7 LADDVLQLLDNRIEDNY-----RVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHHTTTTCS-----CEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC-----eeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 34444444444444432 2469999999999999999999999877644
No 330
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.94 E-value=0.005 Score=65.20 Aligned_cols=32 Identities=34% Similarity=0.523 Sum_probs=28.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
+..|.|.|++|+||||+++.+|+.+|.+++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 34599999999999999999999999877653
No 331
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.93 E-value=0.0047 Score=64.84 Aligned_cols=29 Identities=31% Similarity=0.652 Sum_probs=25.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~ 426 (934)
.-|+|.||||+||||+++.++..+|....
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 45999999999999999999999987543
No 332
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.93 E-value=0.015 Score=64.79 Aligned_cols=76 Identities=13% Similarity=0.112 Sum_probs=49.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCcccccc----c-----------cchHHHHHHHHH-HhhcC
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMASS----E-----------RKTSAALAQAFN-TAQSY 455 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~~~----~-----------g~~e~~L~~~f~-~A~~~ 455 (934)
..+.-++|+|+||+||||++..+|... |..++.++........ . ..+...+...+. ..+..
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~ 140 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 140 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhcc
Confidence 455669999999999999999998765 5677778774322110 0 011222223332 22345
Q ss_pred CCEEEEEcchhhccc
Q 002337 456 SPTILLLRDFDVFRN 470 (934)
Q Consensus 456 ~P~IL~IDEID~L~~ 470 (934)
.+.+++||.+..+.+
T Consensus 141 ~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 141 AVDVIVVDSVAALTP 155 (356)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcCHHHhcc
Confidence 789999999998874
No 333
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.93 E-value=0.0049 Score=63.43 Aligned_cols=31 Identities=26% Similarity=0.555 Sum_probs=27.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
..|+|.|+||+||||+++.+|..+|..++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4599999999999999999999998766543
No 334
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.93 E-value=0.0037 Score=62.26 Aligned_cols=32 Identities=25% Similarity=0.541 Sum_probs=28.5
Q ss_pred CcceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
..|+|.|+||+|||++++.++..++.+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35899999999999999999999999887654
No 335
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.92 E-value=0.0041 Score=68.23 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=52.3
Q ss_pred hcCCCCCCcceecCCCCCcchHHHHHHHHHc---------------C----CcEEEecCcccccc-----c---cc----
Q 002337 678 SSGLRKRSGVLLYGPPGTGKTLLAKAVATEC---------------S----LNFLSVKGPELINM-----Y---IG---- 726 (934)
Q Consensus 678 ~~~~~~~~~iLl~GppGtGKT~lakalA~~~---------------~----~~~i~v~~~~l~~~-----~---~G---- 726 (934)
..|+.++.-++++||||+|||+++..+|... + ..+++++..+-+.. + .|
T Consensus 92 ~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~ 171 (322)
T 2i1q_A 92 GGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQ 171 (322)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHH
T ss_pred CCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHH
Confidence 3578888889999999999999999998653 2 46677765442100 0 00
Q ss_pred ------------hhh---hhhHHHHHHHHh-CCCcEEEecccccccc
Q 002337 727 ------------ESE---KNVRDIFQKARS-ARPCVIFFDELDSLAP 757 (934)
Q Consensus 727 ------------ese---~~v~~lf~~A~~-~~p~vlfiDEid~l~~ 757 (934)
..+ ..+..+....+. ..+.+|+||.+..+..
T Consensus 172 ~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 172 TVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp HHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred HHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 001 112234444455 6789999999998864
No 336
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.92 E-value=0.0025 Score=70.45 Aligned_cols=70 Identities=13% Similarity=0.205 Sum_probs=46.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC--cEEEEecCcccc-----c---cccchHHHHHHHHHHhhcCCCEEEEEcchh
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGI--HVVEYSCHNLMA-----S---SERKTSAALAQAFNTAQSYSPTILLLRDFD 466 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~--~~~~I~~~~L~~-----~---~~g~~e~~L~~~f~~A~~~~P~IL~IDEID 466 (934)
+..+++.||+|+||||+++++++.+.. ..+.++...... . +........+..+..|....|-++++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 345999999999999999999998754 344554432111 0 000012234455666667789999999964
No 337
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.91 E-value=0.0042 Score=64.09 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=26.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~ 426 (934)
+..|+|.|+||+||||+++.+|..++..++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 345999999999999999999999986443
No 338
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.90 E-value=0.0059 Score=64.56 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=26.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~ 426 (934)
+..|.|.||+||||||+++.+|+.+|..++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 345999999999999999999999998654
No 339
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.89 E-value=0.008 Score=67.01 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=26.8
Q ss_pred cccCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 002337 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRL 421 (934)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTtLaralA~el 421 (934)
.+....+.-++|+||+|+||||+++.+|+.+
T Consensus 151 ~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 151 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3445667789999999999999999999987
No 340
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.89 E-value=0.0051 Score=61.98 Aligned_cols=28 Identities=25% Similarity=0.581 Sum_probs=25.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~ 426 (934)
.|.|.|++||||||+++.+++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 3899999999999999999999997654
No 341
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.89 E-value=0.0053 Score=63.03 Aligned_cols=33 Identities=27% Similarity=0.527 Sum_probs=27.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCcEEEEecCccc
Q 002337 400 VLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNLM 434 (934)
Q Consensus 400 VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L~ 434 (934)
|+|.||||+||+|.++.+|+.+|.. .|+..+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~--~istGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFV--HISTGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCE--EEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCe--EEcHHHHH
Confidence 7899999999999999999999875 45544443
No 342
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.89 E-value=0.0082 Score=67.38 Aligned_cols=73 Identities=25% Similarity=0.463 Sum_probs=48.1
Q ss_pred CCCCCcceecCCCCCcchHHHHHHHHHcC----CcEEEecCc-ccc-c---cccch-----hhhhhHHHHHHHHhCCCcE
Q 002337 681 LRKRSGVLLYGPPGTGKTLLAKAVATECS----LNFLSVKGP-ELI-N---MYIGE-----SEKNVRDIFQKARSARPCV 746 (934)
Q Consensus 681 ~~~~~~iLl~GppGtGKT~lakalA~~~~----~~~i~v~~~-~l~-~---~~~Ge-----se~~v~~lf~~A~~~~p~v 746 (934)
+.++..+++.||+|+||||++++++.... ..++.+..+ ++. . .|+.+ ....++..+..+-...|.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ 212 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 212 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCE
Confidence 55667789999999999999999988652 344343321 110 0 01211 2334566667776779999
Q ss_pred EEecccc
Q 002337 747 IFFDELD 753 (934)
Q Consensus 747 lfiDEid 753 (934)
|++||+-
T Consensus 213 illdE~~ 219 (372)
T 2ewv_A 213 IFVGEMR 219 (372)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9999983
No 343
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.87 E-value=0.0028 Score=67.62 Aligned_cols=39 Identities=18% Similarity=0.122 Sum_probs=31.2
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+.+..+.-+.|.||+|+|||||++++++.+.+.-+.|..
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 65 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 65 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 334555559999999999999999999998777666543
No 344
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.86 E-value=0.0066 Score=60.62 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=27.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 002337 400 VLLHGLPGCGKRTVVRYVARRL---GIHVVEYS 429 (934)
Q Consensus 400 VLL~GppGtGKTtLaralA~el---g~~~~~I~ 429 (934)
|.|.|++|+||||+++.++..+ |.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 8999999999999999999998 88877664
No 345
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.86 E-value=0.018 Score=63.86 Aligned_cols=77 Identities=9% Similarity=0.027 Sum_probs=49.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh---------CCcEEEEecCccccc--------ccc----------------c
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRL---------GIHVVEYSCHNLMAS--------SER----------------K 440 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~el---------g~~~~~I~~~~L~~~--------~~g----------------~ 440 (934)
+..+.-++|+||||+|||+++..+|... +..++.++....+.. ..+ .
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 3555669999999999999999999873 456777776542110 000 0
Q ss_pred hH---HHHHHHHHHhhc--CCCEEEEEcchhhccc
Q 002337 441 TS---AALAQAFNTAQS--YSPTILLLRDFDVFRN 470 (934)
Q Consensus 441 ~e---~~L~~~f~~A~~--~~P~IL~IDEID~L~~ 470 (934)
.+ ..+..+...... ..+.+++||.+..+..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 11 112222333444 5789999999998875
No 346
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.85 E-value=0.0047 Score=68.21 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=53.1
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHcCC--cEEEecCccccc-----c---ccchhhhhhHHHHHHHHhCCCcEEE
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATECSL--NFLSVKGPELIN-----M---YIGESEKNVRDIFQKARSARPCVIF 748 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~~~--~~i~v~~~~l~~-----~---~~Gese~~v~~lf~~A~~~~p~vlf 748 (934)
..+.++..+++.||+|+||||++++++..... ..+.+.+...+. . ++.......+..+..|-...|.+|+
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEE
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEE
Confidence 34566789999999999999999999988643 356666542211 1 2200223456677777788999999
Q ss_pred eccccc
Q 002337 749 FDELDS 754 (934)
Q Consensus 749 iDEid~ 754 (934)
+||.-+
T Consensus 246 ldE~~~ 251 (330)
T 2pt7_A 246 LGELRS 251 (330)
T ss_dssp ECCCCS
T ss_pred EcCCCh
Confidence 999743
No 347
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.85 E-value=0.012 Score=65.34 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=30.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhC---------CcEEEEecCc
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLG---------IHVVEYSCHN 432 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~elg---------~~~~~I~~~~ 432 (934)
+..+.-++|+||||+|||||++.++.... -..+.++..+
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 45566699999999999999999999872 3456777654
No 348
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.83 E-value=0.0028 Score=66.23 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=32.2
Q ss_pred cccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
.+.+..+.-+.|.||+|+|||||++++++.+.+.-+.|..
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 67 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 67 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEE
Confidence 3444556669999999999999999999998777666644
No 349
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.83 E-value=0.0026 Score=65.79 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=30.7
Q ss_pred cCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
.+..+.-+.|.||+|+|||||++++++.+...-+.|..
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 68 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 68 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 34455559999999999999999999998777666644
No 350
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.82 E-value=0.0099 Score=63.11 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=30.4
Q ss_pred CCcceecCCCCCcchHHHHHHHHH---cCCcEEEecCccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATE---CSLNFLSVKGPEL 720 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~---~~~~~i~v~~~~l 720 (934)
+.-|+|.|+||+|||++++.++.. .+..++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 456889999999999999999987 6888886665444
No 351
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.81 E-value=0.009 Score=69.00 Aligned_cols=46 Identities=28% Similarity=0.369 Sum_probs=34.1
Q ss_pred HHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 002337 376 VKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL 421 (934)
Q Consensus 376 ~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~el 421 (934)
.+.|..++.+...+-.+....+.-++|+|++|+||||+++.||+.+
T Consensus 272 ~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 272 KEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp HHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3445555555444444555667789999999999999999999987
No 352
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.81 E-value=0.0026 Score=67.38 Aligned_cols=40 Identities=18% Similarity=0.088 Sum_probs=32.7
Q ss_pred cccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecC
Q 002337 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCH 431 (934)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~ 431 (934)
.+.+..+.-+.|.||+|+|||||++.+++.+... +.|...
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~ 59 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFA 59 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEET
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEEC
Confidence 3445566669999999999999999999998877 777543
No 353
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.81 E-value=0.0045 Score=62.74 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=29.1
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
+..|+|.|+||+||||+++.++..++.+++..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 456899999999999999999999998877654
No 354
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.80 E-value=0.0029 Score=67.28 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=31.2
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+.+..+.-+.|.||+|+|||||++++++.+.+.-+.|..
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 66 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 66 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 334555569999999999999999999998776666543
No 355
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.80 E-value=0.0042 Score=63.96 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=29.0
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEe
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 715 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v 715 (934)
++..|+|.|+||+||||+++.+|..++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 346789999999999999999999999877765
No 356
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.79 E-value=0.0046 Score=65.48 Aligned_cols=33 Identities=30% Similarity=0.436 Sum_probs=29.5
Q ss_pred cceecCCCCCcchHHHHHHHHHcCCcEEEecCc
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 718 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~ 718 (934)
-+++.||||+|||++|+.+|..++..+++.+.-
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 468999999999999999999999999887753
No 357
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.79 E-value=0.0084 Score=64.79 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=30.5
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccc
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 720 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l 720 (934)
.+.-++|.||||+||||+++.++..++..+++|++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 35678999999999999999999988555677765333
No 358
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.79 E-value=0.0032 Score=67.25 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=31.8
Q ss_pred cccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
.+.+..+.-+.|.||+|+|||||++++++.+.+.-+.|..
T Consensus 44 sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 83 (263)
T 2olj_A 44 NVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIII 83 (263)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Confidence 3444555569999999999999999999998777666643
No 359
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.77 E-value=0.0068 Score=61.74 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=28.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecC
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCH 431 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~ 431 (934)
.+.-|.|.||+|+||||+++.+++.++..+..++..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d 40 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMD 40 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecC
Confidence 345589999999999999999999987444444443
No 360
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.77 E-value=0.0052 Score=62.45 Aligned_cols=28 Identities=36% Similarity=0.533 Sum_probs=24.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
.|.|.||+||||||+++.+++ +|..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 489999999999999999998 7876653
No 361
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.77 E-value=0.0068 Score=64.96 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=0.0
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHHc-------------CCcEEEecCccccccccchhhhhhHHH-----------
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATEC-------------SLNFLSVKGPELINMYIGESEKNVRDI----------- 735 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~~-------------~~~~i~v~~~~l~~~~~Gese~~v~~l----------- 735 (934)
++.++.-++|+||||+|||++++.++... +.++++++..+-...........-..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~ 105 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADG 105 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCc
Q ss_pred ------------------HHHHHhC--CCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEE
Q 002337 736 ------------------FQKARSA--RPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGA 795 (934)
Q Consensus 736 ------------------f~~A~~~--~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~a 795 (934)
++.++.. .|.+|+|||+-.+.+........-...-+.+..+..+ .++.||.+
T Consensus 106 l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~--------~g~tvi~i 177 (279)
T 1nlf_A 106 LLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD--------TGCSIVFL 177 (279)
T ss_dssp EEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH--------HCCEEEEE
T ss_pred eEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHH--------cCCEEEEE
Q ss_pred cCCCC
Q 002337 796 SNRPD 800 (934)
Q Consensus 796 TNrp~ 800 (934)
++...
T Consensus 178 ~H~~~ 182 (279)
T 1nlf_A 178 HHASK 182 (279)
T ss_dssp EEC--
T ss_pred ecCCC
No 362
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.77 E-value=0.029 Score=64.02 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=46.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCcccc-------------------ccc-cchHHHHHHHHHHh
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMA-------------------SSE-RKTSAALAQAFNTA 452 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~-------------------~~~-g~~e~~L~~~f~~A 452 (934)
.+.-|++.||+|+||||++..+|..+ |..+..+++.-... ... ..........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45678999999999999999999876 66666666541100 000 11223344556666
Q ss_pred hcCCCEEEEEcchh
Q 002337 453 QSYSPTILLLRDFD 466 (934)
Q Consensus 453 ~~~~P~IL~IDEID 466 (934)
....+-++++|...
T Consensus 176 ~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 176 VKNKMDIIIVDTAG 189 (433)
T ss_dssp TTTTCSEEEEEECC
T ss_pred HhcCCCEEEEECCC
Confidence 65567889999764
No 363
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.77 E-value=0.047 Score=62.80 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=31.6
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHc----CCcEEEecC
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC----SLNFLSVKG 717 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~----~~~~i~v~~ 717 (934)
.|+.++.-+++.|+||+|||+++..+|... +.+++.++.
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 689999999999999999999999887643 446666553
No 364
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.76 E-value=0.006 Score=62.53 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=26.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
.|+|.|+||+||||+++.++..+|..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 389999999999999999999998766543
No 365
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.76 E-value=0.0029 Score=66.54 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=31.5
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+.+..+.-+.|.||+|+|||||++.+++.+.+.-+.|..
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 334555569999999999999999999998777666644
No 366
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.76 E-value=0.003 Score=62.93 Aligned_cols=32 Identities=38% Similarity=0.594 Sum_probs=27.6
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEe
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 715 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v 715 (934)
+..|+|.|+||+||||+++.+++.++..++..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 45689999999999999999999998776644
No 367
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.75 E-value=0.0057 Score=61.82 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLG 422 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg 422 (934)
.+.-+.|.||+|+||||+++.+++.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345589999999999999999999864
No 368
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.75 E-value=0.0044 Score=60.83 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=28.9
Q ss_pred CcceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
..|+|.|++|+|||++++.+|..++.+++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 47899999999999999999999999988654
No 369
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.75 E-value=0.0057 Score=64.28 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=25.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGI 423 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~ 423 (934)
..+.-|.|.||+|+||||+++.+++.+|.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 34445999999999999999999999874
No 370
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.74 E-value=0.0038 Score=62.62 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=29.6
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
++..|+|.|+||+||||+++.+|..++..++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 4567899999999999999999999998877654
No 371
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.73 E-value=0.0035 Score=66.67 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=31.3
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+.+..+.-+.|.||+|+|||||++++++.+.+.-+.|..
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~ 74 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 74 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 344555569999999999999999999998777666643
No 372
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.72 E-value=0.037 Score=63.21 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=48.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecCcccc-------------------c-cccchHHHHHHHHHHh
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCHNLMA-------------------S-SERKTSAALAQAFNTA 452 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~~L~~-------------------~-~~g~~e~~L~~~f~~A 452 (934)
.+.-|++.|++|+||||++..+|..+ |..+..+++..... . ........++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999876 66676666542110 0 1122344556677777
Q ss_pred hcCCCEEEEEcchh
Q 002337 453 QSYSPTILLLRDFD 466 (934)
Q Consensus 453 ~~~~P~IL~IDEID 466 (934)
.....-+++||..-
T Consensus 179 ~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 KSKGVDIIIVDTAG 192 (443)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HhCCCCEEEEECCC
Confidence 76567788888764
No 373
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.70 E-value=0.0032 Score=67.68 Aligned_cols=39 Identities=18% Similarity=0.125 Sum_probs=31.1
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+.+..+.-+.|.||+|+|||||++++++.+...-+.|..
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~ 67 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEE
Confidence 334455559999999999999999999998777666543
No 374
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.69 E-value=0.0055 Score=63.31 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=23.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRL 421 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~el 421 (934)
+..+.-+.|.||+|+|||||++.+++..
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4445569999999999999999999987
No 375
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.68 E-value=0.0084 Score=60.07 Aligned_cols=30 Identities=30% Similarity=0.547 Sum_probs=26.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 002337 400 VLLHGLPGCGKRTVVRYVARRL---GIHVVEYS 429 (934)
Q Consensus 400 VLL~GppGtGKTtLaralA~el---g~~~~~I~ 429 (934)
|.|.|++||||||+++.++..+ |..++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 8999999999999999999999 88877554
No 376
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.68 E-value=0.0072 Score=62.55 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=24.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCcEE
Q 002337 400 VLLHGLPGCGKRTVVRYVARRLGIHVV 426 (934)
Q Consensus 400 VLL~GppGtGKTtLaralA~elg~~~~ 426 (934)
|+|.|+||+||||+++.++..+|..++
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 899999999999999999999986544
No 377
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.68 E-value=0.006 Score=62.29 Aligned_cols=28 Identities=36% Similarity=0.496 Sum_probs=24.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLG 422 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg 422 (934)
..+.-+.|.||+|+|||||++++++.+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4455599999999999999999999974
No 378
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.67 E-value=0.0045 Score=63.76 Aligned_cols=33 Identities=30% Similarity=0.542 Sum_probs=29.1
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
+..|+|.|+||+||||+++.+|..++..++..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 37 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTG 37 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEehh
Confidence 456899999999999999999999998887653
No 379
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.66 E-value=0.0037 Score=66.80 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=31.7
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+.+..+.-+.|.||+|+|||||++++++.+.+.-+.|..
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~ 66 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLY 66 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 344555669999999999999999999998777666654
No 380
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.66 E-value=0.0044 Score=64.20 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=29.1
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
++..|+|.|+||+||||+++.+|..++..++..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 39 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSG 39 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEech
Confidence 4567999999999999999999999988777653
No 381
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.66 E-value=0.0039 Score=66.89 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=31.8
Q ss_pred cccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
.+.+..+.-+.|.||+|+|||||++.+++.+...-+.|..
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~ 78 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 3445556669999999999999999999998776666543
No 382
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.66 E-value=0.0034 Score=67.62 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=31.9
Q ss_pred cccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
.+.+..+.-+.|.||+|+|||||++.+++.+...-+.|..
T Consensus 41 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 80 (279)
T 2ihy_A 41 SWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80 (279)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEE
Confidence 3344555569999999999999999999998777666644
No 383
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.66 E-value=0.0028 Score=66.63 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=30.3
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+.+..+.-+.|.||+|+|||||++.+++.+.+.-+.|..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~ 64 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAI 64 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEE
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 344556669999999999999999999887655555543
No 384
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.65 E-value=0.0085 Score=62.72 Aligned_cols=31 Identities=35% Similarity=0.572 Sum_probs=26.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
+..|.|.||+||||||+++.+|+.+|..++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3469999999999999999999999876543
No 385
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.65 E-value=0.026 Score=65.64 Aligned_cols=75 Identities=17% Similarity=0.337 Sum_probs=50.5
Q ss_pred Cc-EEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCC--CCChhhhCCCCcceeeeecC
Q 002337 744 PC-VIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPD--LIDPALLRPGRFDKLLYVGV 820 (934)
Q Consensus 744 p~-vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~--~lD~allrpGRfd~~i~v~~ 820 (934)
|- +|+|||+..+... .......++..+...- ..-.+.+|.+|.+|. .++..++. .|...|.+.+
T Consensus 297 P~ivlvIDE~~~ll~~------~~~~~~~~l~~Lar~g-----Ra~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT------VGKKVEELIARLAQKA-----RAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHH------HHHHHHHHHHHHHHHC-----GGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhh------hhHHHHHHHHHHHHHh-----hhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 53 8999999877631 0112234444544431 123688889999997 68887776 7888899998
Q ss_pred CCCHHHHHHHHH
Q 002337 821 NSDVSYRERVLK 832 (934)
Q Consensus 821 Pp~~~~r~~Il~ 832 (934)
.+..+...|+.
T Consensus 364 -~s~~dsr~ilg 374 (512)
T 2ius_A 364 -SSKIDSRTILD 374 (512)
T ss_dssp -SSHHHHHHHHS
T ss_pred -CCHHHHHHhcC
Confidence 67777777764
No 386
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.65 E-value=0.065 Score=63.46 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=19.9
Q ss_pred CCcceecCCCCCcchHHHHHHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVAT 706 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~ 706 (934)
..-++++||+|+|||++|+.++.
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEcCCCCCHHHHHHHHHh
Confidence 45688999999999999998864
No 387
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.64 E-value=0.0057 Score=64.35 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=29.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+.. .-+.|.||+|+|||||++++++.+.+.-+.|..
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 57 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL 57 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 344 559999999999999999999998777666643
No 388
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.64 E-value=0.0035 Score=66.53 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=31.2
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEe
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~ 429 (934)
+.+..+.-+.|.||+|+|||||++.+++.+...-+.|.
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 63 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 34455566999999999999999999999877766664
No 389
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.63 E-value=0.0052 Score=63.65 Aligned_cols=41 Identities=24% Similarity=0.464 Sum_probs=32.1
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccc
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN 722 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~ 722 (934)
.+..++-|+|.||||+||+|.|+.+|+.++.+.+ +..+++.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdllR 65 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLLR 65 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHHH
Confidence 4556677889999999999999999999976654 4445543
No 390
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.63 E-value=0.005 Score=60.02 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=25.9
Q ss_pred cceecCCCCCcchHHHHHHHHHcCCcEEEe
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECSLNFLSV 715 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~~~~i~v 715 (934)
-|+|.||||+||||+++.+ ...+.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888887765
No 391
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.62 E-value=0.0048 Score=61.61 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=28.3
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
+..|+|.|+||+||||+++.++..++..++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 35 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAG 35 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHH
Confidence 456899999999999999999999988776543
No 392
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.62 E-value=0.015 Score=60.51 Aligned_cols=71 Identities=21% Similarity=0.179 Sum_probs=45.1
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCc-------cccccccchh-----hhhhHHHHHHHHh----CCC
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGP-------ELINMYIGES-----EKNVRDIFQKARS----ARP 744 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~-------~l~~~~~Ges-----e~~v~~lf~~A~~----~~p 744 (934)
+.-++++||+|+|||+++..++..+ +..++.++.. .+.+. .|-. -....++++.++. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 4456778999999999988877655 5566655422 12222 2211 1123467776665 358
Q ss_pred cEEEecccccc
Q 002337 745 CVIFFDELDSL 755 (934)
Q Consensus 745 ~vlfiDEid~l 755 (934)
.+|+|||+..+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999865
No 393
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.61 E-value=0.0048 Score=61.50 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=22.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLG 422 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg 422 (934)
-|+|.|+||+||||+++.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999999986
No 394
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.61 E-value=0.0077 Score=66.03 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=30.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHN 432 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~ 432 (934)
..|+|.||+|+||||+++.+|++++..++.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 46999999999999999999999998777776543
No 395
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.61 E-value=0.0036 Score=66.14 Aligned_cols=38 Identities=24% Similarity=0.222 Sum_probs=30.7
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEe
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~ 429 (934)
+.+..+.-+.|.||+|+|||||++.+++.+...-+.|.
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 67 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 34455566999999999999999999999877666554
No 396
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.60 E-value=0.0079 Score=60.73 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=28.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh-CCcEEEEe
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL-GIHVVEYS 429 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el-g~~~~~I~ 429 (934)
+.-|.|.|++|+||||+++.++..+ |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 3459999999999999999999998 57666654
No 397
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.59 E-value=0.0073 Score=60.24 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLG 422 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg 422 (934)
+.-+.|.||+|+|||||++.+++.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45689999999999999999999864
No 398
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.57 E-value=0.0074 Score=61.13 Aligned_cols=33 Identities=24% Similarity=0.590 Sum_probs=28.4
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
+.-|+|.|++|+||||+++.++..++..++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 457899999999999999999999987776543
No 399
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.54 E-value=0.0067 Score=61.62 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLG 422 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg 422 (934)
++..+.|.||+|+|||||++.+++...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345699999999999999999999874
No 400
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.53 E-value=0.025 Score=59.10 Aligned_cols=37 Identities=32% Similarity=0.257 Sum_probs=29.1
Q ss_pred CcceecCCCCCcchHHHHHHHHHcCCcEEEecCc-ccc
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP-ELI 721 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~-~l~ 721 (934)
..+++.||+|+|||.++.+++...+...+.+... +|.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~ 146 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 3589999999999999999988887766666543 443
No 401
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.52 E-value=0.0092 Score=60.34 Aligned_cols=30 Identities=33% Similarity=0.484 Sum_probs=26.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
.|.|.|++|+||||+++.+|+.+|.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 589999999999999999999999776653
No 402
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.51 E-value=0.084 Score=60.76 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRL 421 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~el 421 (934)
.+++.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 403
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.51 E-value=0.0061 Score=59.79 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=28.0
Q ss_pred CcceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
..|+|.|+||+|||++++.++..++.+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 35899999999999999999999998877643
No 404
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.51 E-value=0.0064 Score=63.30 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=28.9
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
+..|+|.|+||+||||+++.+|..++..++..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 48 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATG 48 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecHH
Confidence 457999999999999999999999998777653
No 405
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.50 E-value=0.0069 Score=60.73 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLG 422 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg 422 (934)
-+.|.||+|+||||+++.+++.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999875
No 406
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.47 E-value=0.051 Score=56.31 Aligned_cols=38 Identities=26% Similarity=0.222 Sum_probs=27.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHH----hCCcEEEEecC
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARR----LGIHVVEYSCH 431 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~e----lg~~~~~I~~~ 431 (934)
+.++.-++++|+||+|||+++..+|.. .+..++.++..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 355666999999999999999876543 25566666543
No 407
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.47 E-value=0.0034 Score=63.12 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=29.1
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
.+.-|+|.|+||+||||+++.++..++..++..+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 3567899999999999999999999987776554
No 408
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.47 E-value=0.019 Score=59.59 Aligned_cols=40 Identities=30% Similarity=0.339 Sum_probs=30.6
Q ss_pred hhcCCCCCCcceecCCCCCcchHHHHHHHHH----cCCcEEEec
Q 002337 677 FSSGLRKRSGVLLYGPPGTGKTLLAKAVATE----CSLNFLSVK 716 (934)
Q Consensus 677 ~~~~~~~~~~iLl~GppGtGKT~lakalA~~----~~~~~i~v~ 716 (934)
+..|+.++.-++++|+||+|||++|..+|.. .+.++++++
T Consensus 23 l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 23 IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred hcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 4458888999999999999999999876533 355565554
No 409
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.46 E-value=0.0069 Score=61.26 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRL 421 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~el 421 (934)
.+.-+.|.||+|+||||+++.+++.+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45569999999999999999999987
No 410
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.46 E-value=0.0077 Score=61.13 Aligned_cols=30 Identities=33% Similarity=0.545 Sum_probs=26.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
..|.|.|++||||||+++.++..+|.+++.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 358999999999999999999998876654
No 411
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.45 E-value=0.0091 Score=60.49 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=24.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIH 424 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~ 424 (934)
.-|+|.|+||+||||+++.++..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 458999999999999999999998763
No 412
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.45 E-value=0.0086 Score=59.92 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLG 422 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg 422 (934)
-++|.||||+||||+++.+++..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 479999999999999999998664
No 413
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.44 E-value=0.0065 Score=63.86 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=29.9
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
.++..|+|.||||+||||+++.+++.++..+++++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 34668999999999999999999999987777654
No 414
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.43 E-value=0.012 Score=62.45 Aligned_cols=33 Identities=33% Similarity=0.593 Sum_probs=27.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH---hCCcEEEEec
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARR---LGIHVVEYSC 430 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~e---lg~~~~~I~~ 430 (934)
.-|+|.|+||+||||+++.++.. .|..++.++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 45899999999999999999998 6777765554
No 415
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.43 E-value=0.0055 Score=61.03 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=23.5
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcC
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECS 709 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~ 709 (934)
+.-|+|.|+||+||||+++.++..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999887
No 416
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.42 E-value=0.0068 Score=62.07 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=27.5
Q ss_pred cceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
.|+|.||||+||||+++.++..++..+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 4789999999999999999999988877664
No 417
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.40 E-value=0.0081 Score=60.89 Aligned_cols=31 Identities=39% Similarity=0.592 Sum_probs=26.5
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEE
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFL 713 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i 713 (934)
++.-+.|.||+|+||||++++++..++..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 4567899999999999999999998865444
No 418
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.40 E-value=0.0031 Score=66.48 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=27.7
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcE
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHV 425 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~ 425 (934)
+.+..+.-+.|.||+|+|||||++++++.+...-
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 56 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA 56 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSB
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 3445566699999999999999999999876543
No 419
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.38 E-value=0.0077 Score=61.85 Aligned_cols=35 Identities=31% Similarity=0.554 Sum_probs=28.2
Q ss_pred cceecCCCCCcchHHHHHHHHHcCCcEEEecCccccc
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN 722 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~ 722 (934)
.|+|.||||+||+|.|+.+|+.++.+.++. .+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist--GdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST--GDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH--HHHHH
Confidence 478999999999999999999998766543 44543
No 420
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.38 E-value=0.0066 Score=60.13 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=23.3
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFL 713 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i 713 (934)
+.-|+|.|+||+||||+++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999998877
No 421
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.36 E-value=0.0079 Score=59.32 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=26.4
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEE
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLS 714 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~ 714 (934)
+..++|.||||+||||+++.++..++..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4568899999999999999999988765554
No 422
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.36 E-value=0.013 Score=61.05 Aligned_cols=33 Identities=21% Similarity=0.470 Sum_probs=28.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
..+..|.|.|++|+||||+++.+|+.+|..++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 445569999999999999999999999976553
No 423
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.36 E-value=0.0082 Score=67.02 Aligned_cols=37 Identities=22% Similarity=0.126 Sum_probs=30.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+..+.-+.|.||+|||||||+|++|+.+...-+.|..
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 3444559999999999999999999998777666643
No 424
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.34 E-value=0.0074 Score=61.74 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=27.5
Q ss_pred cceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
.|+|.||||+||||+++.++..++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHH
Confidence 4789999999999999999999988877664
No 425
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.33 E-value=0.097 Score=61.98 Aligned_cols=22 Identities=36% Similarity=0.681 Sum_probs=19.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 002337 398 VAVLLHGLPGCGKRTVVRYVAR 419 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~ 419 (934)
.-|+|+|++|+||||||+.++.
T Consensus 148 ~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEcCCCCCHHHHHHHHHh
Confidence 4589999999999999999864
No 426
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.33 E-value=0.047 Score=60.05 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=24.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRL 421 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~el 421 (934)
..+.-+.|.||+|+||||+++.+|+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456779999999999999999999987
No 427
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.33 E-value=0.0054 Score=63.20 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=28.0
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEEe
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 715 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~v 715 (934)
.+..|+|.||||+||||+++.+|..++..++.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 346789999999999999999999998766543
No 428
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.32 E-value=0.0054 Score=65.49 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=31.6
Q ss_pred cccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
.+.+. +.-+.|.||+|+|||||++.+++.+ +.-+.|..
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~ 62 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFI 62 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEE
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEE
Confidence 44456 6679999999999999999999998 87777654
No 429
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.31 E-value=0.034 Score=56.36 Aligned_cols=118 Identities=18% Similarity=0.214 Sum_probs=69.2
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc---CCcEEEe---cCc------cccccc-----------c--c----hhhhhhHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSV---KGP------ELINMY-----------I--G----ESEKNVRD 734 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v---~~~------~l~~~~-----------~--G----ese~~v~~ 734 (934)
...|++|+++|.|||++|-++|-.. |..+..+ ++. +++..+ . . +.+...+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4678999999999999999886543 6666666 431 233332 0 0 11244566
Q ss_pred HHHHHHh----CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCC
Q 002337 735 IFQKARS----ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPG 810 (934)
Q Consensus 735 lf~~A~~----~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpG 810 (934)
.++.++. ....+|++||+-....-+- -. .+.++.-+ .. ...+.-||.|+|.+ +++|+.
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~----l~--~~ev~~~l----~~---Rp~~~~vIlTGr~a---p~~l~e-- 169 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDY----LP--LEEVISAL----NA---RPGHQTVIITGRGC---HRDILD-- 169 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTS----SC--HHHHHHHH----HT---SCTTCEEEEECSSC---CHHHHH--
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCC----CC--HHHHHHHH----Hh---CcCCCEEEEECCCC---cHHHHH--
Confidence 6666654 4578999999955432110 00 12333332 22 23445677798876 666665
Q ss_pred Ccceeeeec
Q 002337 811 RFDKLLYVG 819 (934)
Q Consensus 811 Rfd~~i~v~ 819 (934)
.-|.+=++.
T Consensus 170 ~AD~VTem~ 178 (196)
T 1g5t_A 170 LADTVSELR 178 (196)
T ss_dssp HCSEEEECC
T ss_pred hCcceeeec
Confidence 556554443
No 430
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.30 E-value=0.053 Score=64.31 Aligned_cols=30 Identities=40% Similarity=0.500 Sum_probs=24.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCcEEEE
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRL---GIHVVEY 428 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~el---g~~~~~I 428 (934)
.+++.|||||||||++++++..+ |..+..+
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 48999999999999999998865 5555544
No 431
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.27 E-value=0.0084 Score=58.54 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=27.5
Q ss_pred cceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
.|+|.|+||+|||++++.++..++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4789999999999999999999998887644
No 432
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.26 E-value=0.0073 Score=67.09 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=30.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+..+.-+.|.||+|||||||+|++|+.....-+.|..
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~ 59 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE
Confidence 3445559999999999999999999998877666644
No 433
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.25 E-value=0.0091 Score=61.06 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=24.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGI 423 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~ 423 (934)
.+.-+.|.||+|+||||+++.+++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3455899999999999999999998854
No 434
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.23 E-value=0.0062 Score=63.26 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=19.3
Q ss_pred CccccCCCCceEEEECCCCCcHHHHHHHHH-HHhC
Q 002337 389 PSVLSLKFRVAVLLHGLPGCGKRTVVRYVA-RRLG 422 (934)
Q Consensus 389 p~~~~~~~~~~VLL~GppGtGKTtLaralA-~elg 422 (934)
+..+.+..+.-+.|.||+|+||||+++.++ +.+.
T Consensus 19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ---CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 334444556669999999999999999999 8764
No 435
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.17 E-value=0.015 Score=63.30 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=25.2
Q ss_pred cCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 002337 393 SLKFRVAVLLHGLPGCGKRTVVRYVARRL 421 (934)
Q Consensus 393 ~~~~~~~VLL~GppGtGKTtLaralA~el 421 (934)
.++.+..+.|+||+|+|||||++.+++.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34555569999999999999999999998
No 436
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.17 E-value=0.068 Score=61.44 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=29.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh----CCcEEEEecC
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRL----GIHVVEYSCH 431 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~el----g~~~~~I~~~ 431 (934)
+.++.-++|.|+||+||||++..+|... |.++..++..
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 3455569999999999999999988764 4567666643
No 437
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.17 E-value=0.009 Score=66.99 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=30.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+..+.-+.|.||+|||||||+|++|+.+...-+.|..
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEE
Confidence 4445559999999999999999999998777666543
No 438
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.16 E-value=0.0088 Score=60.51 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=28.5
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
+..|+|.|+||+||||+++.++..++..++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 346889999999999999999999988777654
No 439
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.16 E-value=0.011 Score=60.12 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=24.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRLG 422 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~elg 422 (934)
..+.-|+|.||+|+||||+++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4455699999999999999999999985
No 440
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.15 E-value=0.0068 Score=64.82 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=25.3
Q ss_pred cccCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 002337 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRL 421 (934)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTtLaralA~el 421 (934)
.+.+..+.-+.|.||+|+|||||++.+++.+
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344555569999999999999999999863
No 441
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.14 E-value=0.0087 Score=59.56 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=28.3
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
+..|+|.|+||+||||+++.++..++..++..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 38 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHH
Confidence 346889999999999999999999988777653
No 442
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.14 E-value=0.0052 Score=65.03 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=24.5
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHH
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARR 420 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~e 420 (934)
+.+..+.-+.|.||+|+|||||++++++.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34455566999999999999999999986
No 443
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.12 E-value=0.013 Score=58.84 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=25.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
+..|.|.|++||||||+++.+|+. |..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 346999999999999999999998 776654
No 444
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.12 E-value=0.071 Score=62.00 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=28.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSC 430 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~ 430 (934)
..+..|+++|++|+||||++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 345679999999999999999999776 667777766
No 445
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.11 E-value=0.074 Score=68.39 Aligned_cols=145 Identities=15% Similarity=0.133 Sum_probs=73.8
Q ss_pred CCcceecCCCCCcchHHHHHHHHHc-------CCcEEEecCccc-----c-------ccc---------cchhhhhhHHH
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATEC-------SLNFLSVKGPEL-----I-------NMY---------IGESEKNVRDI 735 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~-------~~~~i~v~~~~l-----~-------~~~---------~Gese~~v~~l 735 (934)
.+-+.++|+.|+|||+||+.++... ...++.++.+.. . ... .......+.+.
T Consensus 147 ~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 226 (1249)
T 3sfz_A 147 PGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDR 226 (1249)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHH
Confidence 3457899999999999999987642 122333332221 0 000 00111222222
Q ss_pred HHHHHh--CCCcEEEeccccccccCCCCCCCCchhHHHHHHhhhhhccCCcCCCCCEEEEEEcCCCCCCChhhhCCCCcc
Q 002337 736 FQKARS--ARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSSQDLFIIGASNRPDLIDPALLRPGRFD 813 (934)
Q Consensus 736 f~~A~~--~~p~vlfiDEid~l~~~r~~~~~~~~~~~~v~~~lL~~ldg~~~~~~~v~vI~aTNrp~~lD~allrpGRfd 813 (934)
+..... .++.+|+||+++... .+ +.+. .+..||.||..+..... +. .-.
T Consensus 227 l~~~l~~~~~~~LlvlDd~~~~~---------------~~-------~~~~---~~~~ilvTtR~~~~~~~-~~---~~~ 277 (1249)
T 3sfz_A 227 LRVLMLRKHPRSLLILDDVWDPW---------------VL-------KAFD---NQCQILLTTRDKSVTDS-VM---GPK 277 (1249)
T ss_dssp HHHHTSSSSCSCEEEEESCCCHH---------------HH-------TTTC---SSCEEEEEESSTTTTTT-CC---SCB
T ss_pred HHHHHhccCCCEEEEEecCCCHH---------------HH-------Hhhc---CCCEEEEEcCCHHHHHh-hc---CCc
Confidence 332222 337899999987431 11 1111 22356667765533211 11 223
Q ss_pred eeeeecCCCCHHHHHHHHHHHHhcCCCCcCCCHHHHHhhCCCCCC
Q 002337 814 KLLYVGVNSDVSYRERVLKALTRKFKLLEDVSLYSIAKKCPPNFT 858 (934)
Q Consensus 814 ~~i~v~~Pp~~~~r~~Il~~~~~~~~~~~~~~l~~la~~~t~g~s 858 (934)
..+.++.+.+.++-.++|................++++.| .|.-
T Consensus 278 ~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~-~glP 321 (1249)
T 3sfz_A 278 HVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKEC-KGSP 321 (1249)
T ss_dssp CCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHT-TTCH
T ss_pred eEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHh-CCCH
Confidence 4556653356677777777666433222223366788887 5543
No 446
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.09 E-value=0.0082 Score=61.05 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=24.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh-CCc
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRL-GIH 424 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~el-g~~ 424 (934)
+.+.-|.|.|++|+||||+++.+++.+ +..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~ 49 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCS 49 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcE
Confidence 344558999999999999999999987 443
No 447
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.09 E-value=0.012 Score=60.56 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=27.5
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEe
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 715 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v 715 (934)
+..+.|.||+|+||||+++.+++.++.+++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 34688999999999999999999998776643
No 448
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.09 E-value=0.027 Score=61.65 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=22.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHH
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARR 420 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~e 420 (934)
..+.-++|+||||+|||+++..+|..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45566999999999999999999876
No 449
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.09 E-value=0.0077 Score=64.15 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=28.1
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
+.+..+.-+.|.||+|+|||||++++++.+.. -+.|
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I 76 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDI 76 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEE
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEE
Confidence 34455566999999999999999999987653 4444
No 450
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.08 E-value=0.012 Score=68.69 Aligned_cols=74 Identities=22% Similarity=0.363 Sum_probs=50.6
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHHHcC--CcEEEecCcc-ccc---ccc--------chhhhhhHHHHHHHHhCCCc
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVATECS--LNFLSVKGPE-LIN---MYI--------GESEKNVRDIFQKARSARPC 745 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~~~~--~~~i~v~~~~-l~~---~~~--------Gese~~v~~lf~~A~~~~p~ 745 (934)
.+..+.++++.||+|+||||++++++.... ...+.+.++. +.- .++ +..+..+.++...+-...|.
T Consensus 256 ~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD 335 (511)
T 2oap_1 256 AIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPD 335 (511)
T ss_dssp HHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCS
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCC
Confidence 345577899999999999999999998774 3466666543 211 011 11223455666666667899
Q ss_pred EEEecccc
Q 002337 746 VIFFDELD 753 (934)
Q Consensus 746 vlfiDEid 753 (934)
+++++|+-
T Consensus 336 ~iivgEir 343 (511)
T 2oap_1 336 YIIVGEVR 343 (511)
T ss_dssp EEEESCCC
T ss_pred eEEeCCcC
Confidence 99999973
No 451
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.08 E-value=0.017 Score=58.57 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=29.6
Q ss_pred CCCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCccc
Q 002337 682 RKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPEL 720 (934)
Q Consensus 682 ~~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l 720 (934)
.++.-+.|.||+|+||||++++++..+ |...+.+++.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 446778899999999999999999887 444345554333
No 452
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.08 E-value=0.0065 Score=59.86 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=23.5
Q ss_pred CcceecCCCCCcchHHHHHHHH-HcCCcEE
Q 002337 685 SGVLLYGPPGTGKTLLAKAVAT-ECSLNFL 713 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~-~~~~~~i 713 (934)
.-|+|.|+||+||||+++.++. ..+..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4578999999999999999998 4554444
No 453
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.08 E-value=0.006 Score=66.06 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=31.8
Q ss_pred cccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 391 VLSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 391 ~~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
.+.+..+.-+.|.||+|+|||||++++++.+.+.-+.|..
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~ 97 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 97 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEEC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 3445566669999999999999999999988666666543
No 454
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.06 E-value=0.019 Score=60.54 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=30.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCc--------EEEEecCccc
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIH--------VVEYSCHNLM 434 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~--------~~~I~~~~L~ 434 (934)
.-|.|.|++||||||+++.++..+|.+ +..++..++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 459999999999999999999999875 3456665554
No 455
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.06 E-value=0.0073 Score=67.24 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=31.0
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+.+..+.-+.|.||+|||||||+|++|+.+...-+.|..
T Consensus 26 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 64 (353)
T 1oxx_K 26 INIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64 (353)
T ss_dssp EEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 334455559999999999999999999998777666543
No 456
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.05 E-value=0.01 Score=60.23 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=24.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGI 423 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~ 423 (934)
+.-|+|.|++||||||+++.++..++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456999999999999999999998754
No 457
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.05 E-value=0.013 Score=59.30 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRL 421 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~el 421 (934)
.+.|+||+|+||||+++.+++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48999999999999999999987
No 458
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.05 E-value=0.013 Score=60.70 Aligned_cols=30 Identities=10% Similarity=0.275 Sum_probs=24.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGI 423 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~elg~ 423 (934)
...+.-+.|.||+|+|||||++++++....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 345666999999999999999999998753
No 459
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.02 E-value=0.0097 Score=62.99 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=30.0
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
+..+.|.|++|+||||+++.+|..++..|+..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 778999999999999999999999998887654
No 460
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.01 E-value=0.12 Score=53.69 Aligned_cols=34 Identities=29% Similarity=0.435 Sum_probs=26.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSC 430 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~ 430 (934)
...|++.|++|+||||++-.+|..+ |..+..++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 3469999999999999998888776 666655444
No 461
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.99 E-value=0.015 Score=57.98 Aligned_cols=34 Identities=35% Similarity=0.473 Sum_probs=27.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC---CcEEEEe
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLG---IHVVEYS 429 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg---~~~~~I~ 429 (934)
.+..|+|.|++|+||||+++.++..++ ..+..++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 456699999999999999999999884 3344444
No 462
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.98 E-value=0.0066 Score=66.24 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=30.7
Q ss_pred ccCCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEe
Q 002337 392 LSLKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYS 429 (934)
Q Consensus 392 ~~~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~ 429 (934)
+.++.+.-+.|+||+|+|||||++.+++.+.+.-+.|.
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~ 112 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR 112 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEE
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEE
Confidence 34455566999999999999999999998877665553
No 463
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.95 E-value=0.012 Score=58.40 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=30.6
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc---CCcEEEecCc
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVKGP 718 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~ 718 (934)
++..+.|.|++|+||||+++.++..+ +.+++.+++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 35678899999999999999999987 8888877643
No 464
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.95 E-value=0.028 Score=64.82 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.3
Q ss_pred CcceecCCCCCcchHHHHHHHHHc
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATEC 708 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~ 708 (934)
..+++.|+||||||+++.+++..+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 388999999999999999998765
No 465
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.94 E-value=0.019 Score=58.81 Aligned_cols=29 Identities=45% Similarity=0.589 Sum_probs=25.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
.-|.|.|++||||||+++.++. +|..++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 4589999999999999999998 8876554
No 466
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.93 E-value=0.043 Score=60.14 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=37.8
Q ss_pred HHHHHHHHhhccC-----CCccccCCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 002337 375 TVKILASILAPTL-----CPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSC 430 (934)
Q Consensus 375 ~~~~L~~il~p~l-----~p~~~~~~~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~ 430 (934)
..+.|..++.+.. .+-.+....+.-++++|++|+||||++..+|..+ |..+..+++
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 78 LVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp HHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3455555555443 2333444567789999999999999999999876 445555544
No 467
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.91 E-value=0.012 Score=59.71 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLG 422 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg 422 (934)
+.-|+|.|++|+||||+++.++..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45699999999999999999999874
No 468
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.91 E-value=0.012 Score=59.26 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=28.9
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHc-CCcEEEec
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATEC-SLNFLSVK 716 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~-~~~~i~v~ 716 (934)
++..|.|.|++|+||||+++.+++.+ +.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 45678999999999999999999988 57777654
No 469
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.90 E-value=0.013 Score=65.23 Aligned_cols=37 Identities=19% Similarity=0.071 Sum_probs=30.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEEec
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSC 430 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~ 430 (934)
+..+.-+.|.||+|+|||||+|++++.+.+.-+.|..
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i 87 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLV 87 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 4444559999999999999999999998877666543
No 470
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.90 E-value=0.012 Score=64.05 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=33.4
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELIN 722 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~ 722 (934)
+.-+++.||+|+|||+++..+|..++..+++.+.-++..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~ 48 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYK 48 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccc
Confidence 345788999999999999999999999999888766543
No 471
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.89 E-value=0.011 Score=60.66 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=27.5
Q ss_pred cceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
.|+|.|+||+||||+++.++..++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d 32 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTG 32 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHH
Confidence 4789999999999999999999988877663
No 472
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.87 E-value=0.02 Score=58.55 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=27.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC----CcEEEEec
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLG----IHVVEYSC 430 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg----~~~~~I~~ 430 (934)
+.-|+|.|++|+||||+++.+++.++ .+++.++.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 34499999999999999999999874 44666653
No 473
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.85 E-value=0.12 Score=59.14 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=31.5
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHc----CCcEEEecC
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC----SLNFLSVKG 717 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~----~~~~i~v~~ 717 (934)
.|+.++.-+++.|+||+|||+++..+|... +.++++++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 689999999999999999999999887543 456666553
No 474
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.82 E-value=0.041 Score=55.74 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=27.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYS 429 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~ 429 (934)
.+.-|.|.|++|+||||+++.+++.+ +..+..++
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 34559999999999999999999986 55555443
No 475
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.78 E-value=0.014 Score=61.16 Aligned_cols=32 Identities=34% Similarity=0.624 Sum_probs=27.5
Q ss_pred CCCcceecCCCCCcchHHHHHHHHHcCCcEEE
Q 002337 683 KRSGVLLYGPPGTGKTLLAKAVATECSLNFLS 714 (934)
Q Consensus 683 ~~~~iLl~GppGtGKT~lakalA~~~~~~~i~ 714 (934)
++..+.|.||||+||||+++.+++.++...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 35689999999999999999999998876554
No 476
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.78 E-value=0.021 Score=58.38 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=26.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
.|.|.|++||||||+++.++..+|.+++.
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 48999999999999999999999976654
No 477
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.69 E-value=0.0093 Score=66.09 Aligned_cols=30 Identities=27% Similarity=0.526 Sum_probs=26.9
Q ss_pred CcceecCCCCCcchHHHHHHHHHcCCcEEE
Q 002337 685 SGVLLYGPPGTGKTLLAKAVATECSLNFLS 714 (934)
Q Consensus 685 ~~iLl~GppGtGKT~lakalA~~~~~~~i~ 714 (934)
.+++|+||||+|||++++++|..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 358999999999999999999999888755
No 478
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.66 E-value=0.12 Score=56.34 Aligned_cols=38 Identities=26% Similarity=0.172 Sum_probs=28.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh---CCcEEEEecC
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRL---GIHVVEYSCH 431 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~el---g~~~~~I~~~ 431 (934)
+.++.-++|.|+||+|||+++..+|... |.+++.++..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 3445559999999999999999998765 4466666643
No 479
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.65 E-value=0.16 Score=51.38 Aligned_cols=31 Identities=26% Similarity=0.154 Sum_probs=26.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCcEEEE
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRL---GIHVVEY 428 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~el---g~~~~~I 428 (934)
..|++|+++|.||||+|-.+|-+. |..+..+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 459999999999999999988765 6676666
No 480
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.61 E-value=0.013 Score=59.16 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=26.2
Q ss_pred cceecCCCCCcchHHHHHHHHHcCCcEEEec
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECSLNFLSVK 716 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~~~~i~v~ 716 (934)
.|.+.|++|+||||+++.+++ ++.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 887777654
No 481
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.60 E-value=0.014 Score=60.04 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 002337 399 AVLLHGLPGCGKRTVVRYVARR 420 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~e 420 (934)
-+.|.||+|+|||||++++++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999987
No 482
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.58 E-value=0.019 Score=67.13 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=45.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC--cEEEEecCc-ccccc-----------ccchHHHHHHHHHHhhcCCCEEEE
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLGI--HVVEYSCHN-LMASS-----------ERKTSAALAQAFNTAQSYSPTILL 461 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg~--~~~~I~~~~-L~~~~-----------~g~~e~~L~~~f~~A~~~~P~IL~ 461 (934)
.+.++++.||+|+||||+++++++.+.. ..+.+.... +.-.. .+.....+...+..+....|-+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 3455999999999999999999998854 345554432 11000 001111234445555567899999
Q ss_pred Ecchh
Q 002337 462 LRDFD 466 (934)
Q Consensus 462 IDEID 466 (934)
+.|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99874
No 483
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.55 E-value=0.017 Score=58.07 Aligned_cols=29 Identities=14% Similarity=0.492 Sum_probs=25.9
Q ss_pred cceecCCCCCcchHHHHHHHHHcCCcEEE
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECSLNFLS 714 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~~~~i~ 714 (934)
.|.|.|++|+||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987664
No 484
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.54 E-value=0.25 Score=53.81 Aligned_cols=38 Identities=26% Similarity=0.238 Sum_probs=31.1
Q ss_pred cCCCCCCcceecCCCCCcchHHHHHHHHHc---CCcEEEec
Q 002337 679 SGLRKRSGVLLYGPPGTGKTLLAKAVATEC---SLNFLSVK 716 (934)
Q Consensus 679 ~~~~~~~~iLl~GppGtGKT~lakalA~~~---~~~~i~v~ 716 (934)
.|+.++.-+++.|+||+|||+++..+|... +.++++++
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 689999999999999999999999987653 34555554
No 485
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.52 E-value=0.016 Score=63.83 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=28.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecC
Q 002337 398 VAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCH 431 (934)
Q Consensus 398 ~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~ 431 (934)
.-|+|.||+|+|||+|+..+|+.++..++..+.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4589999999999999999999998776665544
No 486
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.52 E-value=0.018 Score=59.49 Aligned_cols=30 Identities=30% Similarity=0.603 Sum_probs=26.3
Q ss_pred cceecCCCCCcchHHHHHHHHHcCCcEEEe
Q 002337 686 GVLLYGPPGTGKTLLAKAVATECSLNFLSV 715 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~~~~~i~v 715 (934)
.|+|.|+||+||||+++.++..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999998766654
No 487
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.49 E-value=0.014 Score=64.13 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=32.4
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEecCccc
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 720 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l 720 (934)
+.-|+|.||+|+|||+|+..+|+.++..+|+.+.-++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 3468899999999999999999999999998886554
No 488
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.48 E-value=0.021 Score=56.91 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=27.4
Q ss_pred cceecCCCCCcchHHHHHHHHHc---CCcEEEec
Q 002337 686 GVLLYGPPGTGKTLLAKAVATEC---SLNFLSVK 716 (934)
Q Consensus 686 ~iLl~GppGtGKT~lakalA~~~---~~~~i~v~ 716 (934)
-|.|.|++|+||||+++.++..+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 88888765
No 489
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.47 E-value=0.026 Score=61.30 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=29.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEEEecCcc
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCHNL 433 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~I~~~~L 433 (934)
+.-|++.||+|+|||+|+..+|..++..++..+...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 3458999999999999999999999876666554433
No 490
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.47 E-value=0.13 Score=58.77 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=28.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh----CCcEEEEecC
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRL----GIHVVEYSCH 431 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~el----g~~~~~I~~~ 431 (934)
.++.-++|.|+||+|||+++..+|... |.+++.++..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 344459999999999999999888754 4567766653
No 491
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.45 E-value=0.024 Score=62.00 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=25.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGI 423 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~elg~ 423 (934)
...+.-|.|.||+|+|||||++.+++.+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 355667999999999999999999998853
No 492
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.43 E-value=0.019 Score=61.37 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=22.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEE
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVV 426 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~ 426 (934)
.+.|.||+|+|||||++.+++.....-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G 31 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKA 31 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 5899999999999999999999865433
No 493
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.43 E-value=0.023 Score=57.85 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=23.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Q 002337 396 FRVAVLLHGLPGCGKRTVVRYVARRLG 422 (934)
Q Consensus 396 ~~~~VLL~GppGtGKTtLaralA~elg 422 (934)
.+.-+.|.||+|+|||||++.+++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345689999999999999999999865
No 494
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.43 E-value=0.02 Score=59.84 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=27.8
Q ss_pred CCcceecCCCCCcchHHHHHHHHHcCCcEEEe
Q 002337 684 RSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 715 (934)
Q Consensus 684 ~~~iLl~GppGtGKT~lakalA~~~~~~~i~v 715 (934)
+..+.+.||+|+|||++++.+|..++..++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 45789999999999999999999998776653
No 495
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.36 E-value=0.012 Score=66.22 Aligned_cols=34 Identities=29% Similarity=0.245 Sum_probs=26.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCcEEEE
Q 002337 394 LKFRVAVLLHGLPGCGKRTVVRYVARRLGIHVVEY 428 (934)
Q Consensus 394 ~~~~~~VLL~GppGtGKTtLaralA~elg~~~~~I 428 (934)
+..+.-+.|.||+|||||||+|+||+.+. .-+.|
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I 77 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEI 77 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEE
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEE
Confidence 44445599999999999999999998765 44444
No 496
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.35 E-value=0.052 Score=67.52 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=22.8
Q ss_pred CCCCCCcceecCCCCCcchHHHHHHHH
Q 002337 680 GLRKRSGVLLYGPPGTGKTLLAKAVAT 706 (934)
Q Consensus 680 ~~~~~~~iLl~GppGtGKT~lakalA~ 706 (934)
....+.-++|.||+|+||||+.|.++.
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 445567789999999999999999874
No 497
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.32 E-value=0.082 Score=55.13 Aligned_cols=33 Identities=15% Similarity=0.010 Sum_probs=27.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCcEEEEecC
Q 002337 399 AVLLHGLPGCGKRTVVRYVARRLGIHVVEYSCH 431 (934)
Q Consensus 399 ~VLL~GppGtGKTtLaralA~elg~~~~~I~~~ 431 (934)
.++++||+|+|||.++.+++..++...+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 389999999999999999998887666666543
No 498
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.29 E-value=0.03 Score=60.19 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=25.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCcEEE
Q 002337 397 RVAVLLHGLPGCGKRTVVRYVARRLGIHVVE 427 (934)
Q Consensus 397 ~~~VLL~GppGtGKTtLaralA~elg~~~~~ 427 (934)
+.-|.|.|++||||||+++.++ ++|..++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 3469999999999999999999 67876543
No 499
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.28 E-value=0.16 Score=57.97 Aligned_cols=56 Identities=25% Similarity=0.248 Sum_probs=37.4
Q ss_pred HHHHHHHhhccCCCccccCCCCceEEEECCCCCcHHHHHHHHHHHh----CCcEEEEecC
Q 002337 376 VKILASILAPTLCPSVLSLKFRVAVLLHGLPGCGKRTVVRYVARRL----GIHVVEYSCH 431 (934)
Q Consensus 376 ~~~L~~il~p~l~p~~~~~~~~~~VLL~GppGtGKTtLaralA~el----g~~~~~I~~~ 431 (934)
.+.|..++.+...+-.+..+.+..|+++|++|+||||++-.+|..+ |..+..+++.
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 3445555543322222222445789999999999999999998765 6777777775
No 500
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.27 E-value=0.026 Score=60.86 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Q 002337 395 KFRVAVLLHGLPGCGKRTVVRYVARRL 421 (934)
Q Consensus 395 ~~~~~VLL~GppGtGKTtLaralA~el 421 (934)
..+.-++|.||||+|||||++.+|+.+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344449999999999999999999886
Done!