BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002338
(934 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CCP0|NEMF_MOUSE Nuclear export mediator factor Nemf OS=Mus musculus GN=Nemf PE=1
SV=2
Length = 1064
Score = 547 bits (1410), Expect = e-154, Method: Compositional matrix adjust.
Identities = 310/745 (41%), Positives = 431/745 (57%), Gaps = 100/745 (13%)
Query: 2 VKVRMNTADVAAEVKCLR-RLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLM 60
+K R +T D+ A + L L+GMR +NVYD+ KTY+ +L K LL+
Sbjct: 1 MKSRFSTVDLRAVLAELNASLLGMRVNNVYDVDNKTYLIRLQKPDF--------KATLLL 52
Query: 61 ESGVRLHTTAYARDKKNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGMNAHYV 120
ESG+R+HTT + K PS F +K RKH+++RRL +QLG DRI+ FQFG A+++
Sbjct: 53 ESGIRIHTTEFEWPKNMMPSSFAMKCRKHLKSRRLVSAKQLGVDRIVDFQFGSDEAAYHL 112
Query: 121 ILELYAQGNILLTDSEFTVLTLLRSHRDDDKGVAIMSRHRYPTEICRVFERTTASKLHAA 180
I+ELY +GNI+LTD E+ +L +LR D+ V R RYP + R
Sbjct: 113 IIELYDRGNIVLTDYEYLILNILRFRTDEADDVKFAVRERYPIDHAR------------- 159
Query: 181 LTSSKEPDANEPDKVNEDGNNVSNASKENLGGQKGGKSFDLSKNSNKNSNDGARAKQPTL 240
A EP E V A+ K L
Sbjct: 160 --------AAEPLLTLERLTEVIAAA----------------------------PKGEVL 183
Query: 241 KTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFEDWLQDVIS 300
K VL L YGPAL EH ++++G N K+ E KLE I+ +++ V + ED+L+ +
Sbjct: 184 KRVLNPLLPYGPALIEHCLIESGFSGNAKVDE--KLESKDIEKILVCVQRAEDYLRK--T 239
Query: 301 GDIVPEGYILMQNK---HLGKDHPPTESGSSTQIYDEFCPLLLNQFRSREFVKFETFDAA 357
+ +GYI+ + + L D P Y+EF P L +Q +++FE+FD A
Sbjct: 240 SNFNGKGYIIQKREAKPSLDADKP----AEDILTYEEFHPFLFSQHLQCPYIEFESFDKA 295
Query: 358 LDEFYSKIESQRAEQQHKAKEDAAFHKLNKIHMDQENRVHTLKQEVDRSVKMAELIEYNL 417
+DEFYSKIE Q+ + + +E A KL+ + D ENR+ L+Q + ELIE NL
Sbjct: 296 VDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELIEMNL 355
Query: 418 EDVDAAILAVRVALANRMSWEDLARMVKEERKAGNPVAGLIDKLYLERNCMSLLLSNN-- 475
+ VD AI VR ALAN++ W ++ +VKE + G+PVA I +L L+ N +++LL N
Sbjct: 356 QIVDRAIQVVRSALANQIDWTEIGVIVKEAQAQGDPVACAIKELKLQTNHVTMLLRNPYL 415
Query: 476 LDEMDDEEKTLPVEK----------------------------VEVDLALSAHANARRWY 507
L E +D + +E V+VDL+LSA+ANA+++Y
Sbjct: 416 LSEEEDGDGDASIENSDAEAPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYANAKKYY 475
Query: 508 ELKKKQESKQEKTITAHSKAFKAAEKKTRLQILQEKTVANISHMRKVHWFEKFNWFISSE 567
+ K+ K ++T+ A KAFK+AEKKT+ + + +TV +I RKV+WFEKF WFISSE
Sbjct: 476 DHKRYAAKKTQRTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFLWFISSE 535
Query: 568 NYLVISGRDAQQNEMIVKRYMSKGDVYVHADLHGASSTVIKNHRPEQPVPPLTLNQAGCF 627
NYL+I GRD QQNE+IVKRY++ GD+YVHADLHGA+S VIKN E P+PP TL +AG
Sbjct: 536 NYLIIGGRDQQQNEIIVKRYLTPGDIYVHADLHGATSCVIKNPTGE-PIPPRTLTEAGTM 594
Query: 628 TVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLL 687
+C+S AWD++++TSAWWVY HQVSKTAPTGEYLT GSFMIRGKKNFLPP L+MGF L
Sbjct: 595 ALCYSAAWDARVITSAWWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMGFSFL 654
Query: 688 FRLDESSLGSHLNERRVRGEEEGMD 712
F++DES + H ER+VR ++E M+
Sbjct: 655 FKVDESCVWRHRGERKVRVQDEDME 679
>sp|Q9VBX1|NEMF_DROME Nuclear export mediator factor NEMF homolog OS=Drosophila
melanogaster GN=Clbn PE=1 SV=2
Length = 992
Score = 489 bits (1258), Expect = e-137, Method: Compositional matrix adjust.
Identities = 359/965 (37%), Positives = 513/965 (53%), Gaps = 161/965 (16%)
Query: 2 VKVRMNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLME 61
+K R NT D+ V L++L+G R + +YD+ KTY+F++ + V EKV LL+E
Sbjct: 1 MKTRFNTFDIICGVAELQKLVGWRVNQIYDVDNKTYLFRMQGTGAV------EKVTLLIE 54
Query: 62 SGVRLHTTAYARDKKNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGMNAHYVI 121
SG R HTT + K PSGF++KLRKH++ +RLE V+Q+G DRI+ FQFG G A++VI
Sbjct: 55 SGTRFHTTRFEWPKNMAPSGFSMKLRKHLKNKRLEKVQQMGSDRIVDFQFGTGDAAYHVI 114
Query: 122 LELYAQGNILLTDSEFTVLTLLRSHRDDDKGVAIMSRHRYPTEICRVFERTTASKLHAAL 181
LELY +GN++LTD E LT L R +G + R + R + T +L A +
Sbjct: 115 LELYDRGNVILTDYE---LTTLYILRPHTEGENLRFAMREKYPVERAKQPTKELELEALV 171
Query: 182 TSSKEPDANEPDKVNEDGNNVSNASKENLGGQKGGKSFDLSKNSNKNSNDGARAKQPTLK 241
K + ++N + L+
Sbjct: 172 -----------------------------------KLLENARNGD------------YLR 184
Query: 242 TVLGEALGYGPALSEHIILDTGL------------------------------VPNMKLS 271
+L L GPA+ EH++L GL N KL
Sbjct: 185 QILTPNLDCGPAVIEHVLLSHGLDNHVIKKETTEETPEAEDKPEKGGKKQRKKQQNTKLE 244
Query: 272 EVNKLEDNAIQVLVLAVAKFEDWLQDVISGDIVPEGYILMQNKHLGKDHPPTESGSSTQI 331
+ N + +L AV ++ + + SG +GYI+ K+ PTE+G+
Sbjct: 245 QKPFDMVNDLPILQQAVKDAQELIAEGNSGK--SKGYIIQ-----VKEEKPTENGTVEFF 297
Query: 332 YD--EFCPLLLNQFRSREFVKFETFDAALDEFYSKIESQRAEQQHKAKEDAAFHKLNKIH 389
+ EF P L QF++ E FE+F A+DEFYS ESQ+ + + +E A KL+ +
Sbjct: 298 FRNIEFHPYLFIQFKNFEKATFESFMEAVDEFYSTQESQKIDMKTLQQEREALKKLSNVK 357
Query: 390 MDQENRVHTLK--QEVDRSVKMAELIEYNLEDVDAAILAVRVALANRMSWEDLARMVKEE 447
D R+ L Q+VDR K AELI N VD AI AV+ A+A+++SW D+ +VKE
Sbjct: 358 NDHAKRLEELTKVQDVDR--KKAELITSNQSLVDNAIRAVQSAIASQLSWPDIHELVKEA 415
Query: 448 RKAGNPVAGLIDKLYLERNCMSLLLSNNLDEMDDEEKTLP-VEKVEVDLALSAHANARRW 506
+ G+ VA I +L LE N +SL+LS+ D +D++ P V V+VDLALSA ANARR+
Sbjct: 416 QANGDAVASSIKQLKLETNHISLMLSDPYDNDEDDDLKDPEVTVVDVDLALSAWANARRY 475
Query: 507 YELKKKQESKQEKTITAHSKAFKAAEKKTRLQILQEKTVANISHMRKVHWFEKFNWFISS 566
Y++K+ K++KT+ A KA K+AE+KT+ + + +T++NI RKV WFEKF WFISS
Sbjct: 476 YDMKRSAAQKEKKTVDASQKALKSAERKTQQTLKEVRTISNIVKARKVFWFEKFYWFISS 535
Query: 567 ENYLVISGRDAQQNEMIVKRYMSKGDVYVHADLHGASSTVIKNHRPEQPVPPLTLNQAGC 626
ENYLVI GRDAQQNE+IVKRYM D+YVHA++ GASS +I+N E+ +PP TL +AG
Sbjct: 536 ENYLVIGGRDAQQNELIVKRYMRPKDIYVHAEIQGASSVIIQNPTGEE-IPPKTLLEAGS 594
Query: 627 FTVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGL 686
+ +S AWD+K+VT+++WV QVSKTAPTGEYL GSFMIRGKKNFLP L MG L
Sbjct: 595 MAISYSVAWDAKVVTNSYWVTSDQVSKTAPTGEYLATGSFMIRGKKNFLPSCHLTMGLSL 654
Query: 687 LFRLDESSLGSHLNERRVRGEEEGMDDFEDSGHHKENS---DIESEKDDTDEKPVAESLS 743
LF+L++S + HL ER+VR ++D + + KEN D+ S+ +D D S
Sbjct: 655 LFKLEDSFIERHLGERKVR----SLEDDQIDPNVKENEVEHDLLSDNEDAD--------S 702
Query: 744 VPNSAHPAPSHTNASNVDSHEFPAEDKTISNGIDSKIFDIARNV--AAPVTPQLEDLIDR 801
N + P +SN + FP + I + D R + + V P++E+ +
Sbjct: 703 NINLSEP------SSNTEITAFPNTEVKIEH-------DTGRIIVRSDSVNPEIEETKES 749
Query: 802 ALGLGSASISSTKHGIETTQFDLSEEDKHVERTATVRDKPYISKAERRKLKKGQGSSVVD 861
+ L DK +++T ++ R+K V
Sbjct: 750 EVVL----------------------DKILKKTDDEETTIILAGPSRKK-------QVSA 780
Query: 862 PKVEREKERGK-DASSQPESIVRKTKIEGGKISRGQKGKLKKMKEKYGDQDEEERNIRMA 920
K + +K R K +A+ Q V ++ RGQKGKLKKMK+KY DQD+EER IRM
Sbjct: 781 KKTKEDKARAKQEAAKQEVPPVSSEPKNPSQVKRGQKGKLKKMKQKYKDQDDEEREIRMM 840
Query: 921 LLAVS 925
+L S
Sbjct: 841 ILKSS 845
>sp|O60524|NEMF_HUMAN Nuclear export mediator factor NEMF OS=Homo sapiens GN=NEMF PE=1
SV=4
Length = 1076
Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/505 (45%), Positives = 320/505 (63%), Gaps = 38/505 (7%)
Query: 240 LKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFEDWLQDVI 299
LK VL L YGPAL EH +L+ G N+K+ E KLE I+ +++++ K ED+++
Sbjct: 183 LKRVLNPLLPYGPALIEHCLLENGFSGNVKVDE--KLETKDIEKVLVSLQKAEDYMK--T 238
Query: 300 SGDIVPEGYILMQNKHLGKDHPPTESGSSTQIYDEFCPLLLNQFRSREFVKFETFDAALD 359
+ + +GYI+ Q + + + Y+EF P L +Q +++FE+FD A+D
Sbjct: 239 TSNFSGKGYII-QKREIKPSLEADKPVEDILTYEEFHPFLFSQHSQCPYIEFESFDKAVD 297
Query: 360 EFYSKIESQRAEQQHKAKEDAAFHKLNKIHMDQENRVHTLKQEVDRSVKMAELIEYNLED 419
EFYSKIE Q+ + + +E A KL+ + D ENR+ L+Q + ELIE NL+
Sbjct: 298 EFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELIEMNLQI 357
Query: 420 VDAAILAVRVALANRMSWEDLARMVKEERKAGNPVAGLIDKLYLERNCMSLLLSN----- 474
VD AI VR ALAN++ W ++ +VKE + G+PVA I +L L+ N +++LL N
Sbjct: 358 VDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVASAIKELKLQTNHVTMLLRNPYLLS 417
Query: 475 ---------------NLDEMDDEEKTLPVEK------------VEVDLALSAHANARRWY 507
N E +K K V+VDL+LSA+ANA+++Y
Sbjct: 418 EEEDDDVDGDVNVEKNETEPPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYANAKKYY 477
Query: 508 ELKKKQESKQEKTITAHSKAFKAAEKKTRLQILQEKTVANISHMRKVHWFEKFNWFISSE 567
+ K+ K +KT+ A KAFK+AEKKT+ + + +TV +I RKV+WFEKF WFISSE
Sbjct: 478 DHKRYAAKKTQKTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFLWFISSE 537
Query: 568 NYLVISGRDAQQNEMIVKRYMSKGDVYVHADLHGASSTVIKNHRPEQPVPPLTLNQAGCF 627
NYL+I GRD QQNE+IVKRY++ GD+YVHADLHGA+S VIKN E P+PP TL +AG
Sbjct: 538 NYLIIGGRDQQQNEIIVKRYLTPGDIYVHADLHGATSCVIKNPTGE-PIPPRTLTEAGTM 596
Query: 628 TVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLL 687
+C+S AWD++++TSAWWVY HQVSKTAPTGEYLT GSFMIRGKKNFLPP L+MGF L
Sbjct: 597 ALCYSAAWDARVITSAWWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMGFSFL 656
Query: 688 FRLDESSLGSHLNERRVRGEEEGMD 712
F++DES + H ER+VR ++E M+
Sbjct: 657 FKVDESCVWRHQGERKVRVQDEDME 681
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 102/170 (60%), Gaps = 9/170 (5%)
Query: 2 VKVRMNTADVAAEVKCLR-RLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLM 60
+K R +T D+ A + L L+GMR +NVYD+ KTY+ +L K LL+
Sbjct: 1 MKSRFSTIDLRAVLAELNASLLGMRVNNVYDVDNKTYLIRLQKPDF--------KATLLL 52
Query: 61 ESGVRLHTTAYARDKKNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGMNAHYV 120
ESG+R+HTT + K PS F +K RKH+++RRL +QLG DRI+ FQFG A+++
Sbjct: 53 ESGIRIHTTEFEWPKNMMPSSFAMKCRKHLKSRRLVSAKQLGVDRIVDFQFGSDEAAYHL 112
Query: 121 ILELYAQGNILLTDSEFTVLTLLRSHRDDDKGVAIMSRHRYPTEICRVFE 170
I+ELY +GNI+LTD E+ +L +LR D+ V R RYP + R E
Sbjct: 113 IIELYDRGNIVLTDYEYVILNILRFRTDEADDVKFAVRERYPLDHARAAE 162
>sp|Q9USN8|YJY1_SCHPO Uncharacterized protein C132.01c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC132.01c PE=1 SV=2
Length = 1021
Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust.
Identities = 253/748 (33%), Positives = 389/748 (52%), Gaps = 89/748 (11%)
Query: 2 VKVRMNTADVAAEVKCLR-RLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLM 60
+K R + D+AA LR +++G R +N YDL+ +T++ K + K +++
Sbjct: 1 MKQRFSALDIAAIAAELREQVVGCRLNNFYDLNARTFLLKF--------GKQDAKYSIVI 52
Query: 61 ESGVRLHTTAYARDKKNTP-SGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGMN--- 116
ESG R H T + D++N P SGF KLRKHI++RRL V QLG DR+++F FG G N
Sbjct: 53 ESGFRAHLTKF--DRENAPLSGFVTKLRKHIKSRRLTGVSQLGTDRVLVFTFGGGANDQD 110
Query: 117 ---AHYVILELYAQGNILLTDSEFTVLTLLRSHR-DDDKGVAIMSRHRYP-------TEI 165
+Y++ E +A GN+LL D + +L+LLR D D+ A+ ++ +
Sbjct: 111 PDWTYYLVCEFFAAGNVLLLDGHYKILSLLRVVTFDKDQVYAVGQKYNLDKNNLVNDNKS 170
Query: 166 CRVFERTTASKLHAALTSSKEPDANEPDKVNEDGNNVSNASKENLGGQKGGKSFDLSKNS 225
TA +L+ L A+ P +NE L
Sbjct: 171 QSTIPHMTAERLNILLDEISTAYAS-PTSINEP----------------------LPDQQ 207
Query: 226 NKNSNDGARAKQP-TLKTVLGEALG-YGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQV 283
+S + +P +L+ L LG YG AL EH + + L P ++ D +
Sbjct: 208 LSSSTKPIKVPKPVSLRKALTIRLGEYGNALIEHCLRRSKLDPLFPACQL--CADETKKN 265
Query: 284 LVLAVAKFEDWLQDVISGDIVPEGYILMQNKHLGKDHPPTESGSSTQIYDEFCPLLLNQF 343
+LA + D + ++ V +GYI + L P T +Y++F P Q
Sbjct: 266 DLLAAFQEADSILAAVNKPPV-KGYIFSLEQALTNAADPQHPEECTTLYEDFHPFQPLQL 324
Query: 344 --RSREFVKFETFDAALDEFYSKIESQRAEQQHKAKEDAAFHKLNKIHMDQENRVHTLKQ 401
+R+ ++F T++ +DEF+S IE+Q+ +++ + A +L DQ ++ +L+
Sbjct: 325 VQANRKCMEFPTYNECVDEFFSSIEAQKLKKRAHDRLATAERRLESAKEDQARKLQSLQD 384
Query: 402 EVDRSVKMAELIEYNLEDVDAAILAVRVALANRMSWEDLARMVKEERKAGNPVAGLID-K 460
A+ IE N E V+A I + L M W D+ ++++ +++ +PVA I
Sbjct: 385 AQATCALRAQAIEMNPELVEAIISYINSLLNQGMDWLDIEKLIQSQKRR-SPVAAAIQIP 443
Query: 461 LYLERNCMSLLLSN--NLDEMDDEEKTLPVEK--------------------VEVDLALS 498
L L +N +++ L N ++D D+ +T + VE+DL+L
Sbjct: 444 LKLIKNAVTVFLPNPESVDNSDESSETSDDDLDDSDDDNKVKEGKVSSKFIAVELDLSLG 503
Query: 499 AHANARRWYELKKKQESKQEKTITAHSKAFKAAEKKTRLQILQEKTVANISHM---RKVH 555
A ANAR+ YEL+++ K+ KT A SKA K+ ++K Q L+ T A+ + RK
Sbjct: 504 AFANARKQYELRREALIKETKTAEAASKALKSTQRKIE-QDLKRSTTADTQRILLGRKTF 562
Query: 556 WFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDVYVHADLHGASSTVIKNHRPEQP 615
+FEKF+WFISSE YLV+ GRDAQQNE++ ++Y + GD++V ADL +S ++KN P P
Sbjct: 563 FFEKFHWFISSEGYLVLGGRDAQQNELLFQKYCNTGDIFVCADLPKSSIIIVKNKNPHDP 622
Query: 616 VPPLTLNQAGCFTVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFL 675
+PP TL QAG + S+AWDSK V SAWWV +VSK APTGE L GSF IR KKN+L
Sbjct: 623 IPPNTLQQAGSLALASSKAWDSKTVISAWWVRIDEVSKLAPTGEILPTGSFAIRAKKNYL 682
Query: 676 PPHPLIMGFGLLFRLDESSLGSHLNERR 703
PP LIMG+G+L++LDE S +ERR
Sbjct: 683 PPTVLIMGYGILWQLDEKS-----SERR 705
>sp|Q12532|TAE2_YEAST Translation-associated element 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TAE2 PE=1 SV=1
Length = 1038
Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 202/730 (27%), Positives = 346/730 (47%), Gaps = 97/730 (13%)
Query: 21 LIGMRCSNVYDL--SPKTYIFKLMNSSGVTESGESEKVLLLMESGVRLHTTAYARDKKNT 78
L G R SN+Y++ S K ++ K + K+ ++++ G+R++ T ++R T
Sbjct: 21 LEGYRLSNIYNIADSSKQFLLKF--------NKPDSKLNVVVDCGLRIYLTEFSRPIPPT 72
Query: 79 PSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGMNAHYVILELYAQGNILLTDSEFT 138
PSGF +KLRKH++ +RL ++Q+ DRI++ QF G Y++LE ++ GN++L D
Sbjct: 73 PSGFVVKLRKHLKAKRLTALKQVDQDRILVLQFADG--HFYLVLEFFSAGNVILLDENRR 130
Query: 139 VLTLLRSHRDDDKGVAIMSRHRYPTEICRVFERTTASKLHAALTSSKEPDANEPDKVNED 198
++ L R ++ +I +F+ +L ++ A+E + N
Sbjct: 131 IMALQR---------VVLEHENKVGQIYEMFDE--------SLFTTNNESADESIEKNRK 173
Query: 199 GNNVSNASKENLGGQKGGKSFDLS--KNSNKNSNDGARAKQPTLKTVLGEALGYGPALSE 256
S E + + D++ K N +GA+ K+ + ++ L P LS
Sbjct: 174 AEYTSELVNEWIKAVQAKYESDITVIKQLNIQGKEGAKKKKVKVPSIHKLLLSKVPHLSS 233
Query: 257 HIILDTGLVPNMKLSE--VNKLEDNAIQVLVLAVAKFEDWLQDVISGDIVPEGYILM--- 311
++ V N+ SE +N LE+ +L + E + Q + + D +GYIL
Sbjct: 234 DLLSKNLKVFNIDPSESCLNLLEETDSLAELLNSTQLE-YNQLLTTTD--RKGYILAKRN 290
Query: 312 QNKHLGKDHPPTESGSSTQIYDEFCPL--LLNQFRSREFVKFET---FDAALDEFYSKIE 366
+N KD E IYD F P +N + E ++ LD+F+S IE
Sbjct: 291 ENYISEKDTADLEF-----IYDTFHPFKPYINGGDTDSSCIIEVEGPYNRTLDKFFSTIE 345
Query: 367 SQRAEQQHKAKEDAAFHKLNKIHMDQENRVHTLKQEVDRSVKMAELIEYNLEDVDAAILA 426
S + + + +E A K++ + + ++ L + + + LI N ++ LA
Sbjct: 346 SSKYALRIQNQESQAQKKIDDARAENDRKIQALLDVQELNERKGHLIIENAPLIEEVKLA 405
Query: 427 VRVALANRMSWEDLARMVKEERKAGNPVAGLID-KLYLERNCMSL---LLSNNLDEMDDE 482
V+ + +M W + +++K E+K GN +A L++ L L++N +S+ L S L+ DE
Sbjct: 406 VQGLIDQQMDWNTIEKLIKSEQKKGNRIAQLLNLPLNLKQNKISVKLDLSSKELNTSSDE 465
Query: 483 E------------------------------KTLPVEKVEV--DLALSAHANARRWYELK 510
+ K EK+ V DL LSA+ANA ++ +K
Sbjct: 466 DNESEGNTTDSSSDSDSEDMESSKERSTKSMKRKSNEKINVTIDLGLSAYANATEYFNIK 525
Query: 511 KKQESKQEKTITAHSKAFKAAEKKTRLQILQEKTVANISHMRKV---HWFEKFNWFISSE 567
K KQ+K KA K E K Q L++K + S ++K+ ++FEK++WFISSE
Sbjct: 526 KTSAQKQKKVEKNVGKAMKNIEVKIDQQ-LKKKLKDSHSVLKKIRTPYFFEKYSWFISSE 584
Query: 568 NYLVISGRDAQQNEMIVKRYMSKGDVYVHADLHGASSTVIKNHRPEQP-VPPLTLNQAGC 626
+LV+ G+ + + I +Y+ D+Y+ + S IKN PE+ VPP TL QAG
Sbjct: 585 GFLVMMGKSPAETDQIYSKYIEDDDIYMSNSFN--SHVWIKN--PEKTEVPPNTLMQAGI 640
Query: 627 FTVCHSQAWDSKMVTSAWWVYPHQVSK-TAPTGEYLTVGSFMIRGK--KNFLPPHPLIMG 683
+ S+AW K+ +S WW + VSK L G+F ++ + +N LPP L+MG
Sbjct: 641 LCMSSSEAWSKKISSSPWWCFAKNVSKFDGSDNSILPEGAFRLKNENDQNHLPPAQLVMG 700
Query: 684 FGLLFRLDES 693
FG L+++ S
Sbjct: 701 FGFLWKVKTS 710
Score = 40.0 bits (92), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 894 RGQKGKLKKMKEKYGDQDEEERNIRMALLAV 924
RG++GKLKK+++KY DQDE ER +R+ L
Sbjct: 838 RGKRGKLKKIQKKYADQDETERLLRLEALGT 868
>sp|Q59020|Y1625_METJA Uncharacterized protein MJ1625 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1625 PE=4 SV=1
Length = 671
Score = 143 bits (361), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 105/361 (29%), Positives = 191/361 (52%), Gaps = 17/361 (4%)
Query: 332 YDEFCPLLLNQFRSREFVKFETFDAALDEFYSKIESQRAEQQHKAKEDAAFHKLNKIHMD 391
Y + P+ L +++ E + +F A+D++++K ++ ++ K+K + + I
Sbjct: 255 YFDVVPIDLKKYKGLEKKYYNSFLEAVDDYFAKFLTKVVVKKEKSKIEKEIERQENILRR 314
Query: 392 QENRVHTLKQEVDRSVKMAELIEYNLEDVDAAILAVRVALANRMSWEDLARMVKEERKAG 451
Q + K++ +++ +LI N + V+ + A+R A +M W + ++++E ++
Sbjct: 315 QLETLKKYKEDAEKNQIKGDLIYANYQIVEELLNAIRQA-REKMDWARIKKIIRENKE-- 371
Query: 452 NPVAGLIDKLYLERNCMSLLLSNNLDEMDDEEKTLPVEKVEVDLALSAHANARRWYELKK 511
+P+ GLI+ + + + L + +D+ EE+ V +D+ +A NA +YE K
Sbjct: 372 HPILGLIENINENIGEIIIRLKSEVDDKVIEER------VSLDIRKNAFENAESYYEKAK 425
Query: 512 KQESKQEKTITAHSKAFKAAEKKTRLQILQEKTVANISHMRKVH----WFEKFNWFISSE 567
K +K E A K E+ + + K ++ +K+ W+EKF W + +
Sbjct: 426 KLRNKIEGIENAIELTKKKIEELKKKGEEELKEKESMQMKKKIRKERKWYEKFKWTVIN- 484
Query: 568 NYLVISGRDAQQNEMIVKRYMSKGDVYVHADLHGASSTVIKNHRPEQPVPPLTLNQAGCF 627
+LVI+G+DA NE+I+K+Y K D+ HAD+ GA TVIK E V TL + F
Sbjct: 485 GFLVIAGKDAITNEIIIKKYTDKDDIVFHADIQGAPFTVIKTQGKE--VDEETLEEVAKF 542
Query: 628 TVCHSQAWDSKM-VTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGL 686
+V HS+AW +WV P Q+SKTA +GEYL G+F+IRG++++ PL +G G+
Sbjct: 543 SVSHSRAWKLGYGAIDTYWVKPEQISKTAESGEYLKRGAFVIRGERHYYRNTPLELGVGV 602
Query: 687 L 687
+
Sbjct: 603 I 603
Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 2/163 (1%)
Query: 2 VKVRMNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLME 61
+K + DV V L+ LI R + L +L+ V E G E V+ + +
Sbjct: 1 MKSEITNVDVCCVVDELQNLINGRLDKAF-LIDNEQNRELILKIHVPEGGSRELVISIGK 59
Query: 62 SGVRLHTTAYARDKKNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGMNAHYVI 121
+ T Y R+K P F + LRK+++ +L + Q+ +DR+++F F + ++
Sbjct: 60 YKY-ITLTNYEREKPKLPPSFAMLLRKYLKNAKLIKIEQVNFDRVVIFHFETRDGIYKLV 118
Query: 122 LELYAQGNILLTDSEFTVLTLLRSHRDDDKGVAIMSRHRYPTE 164
EL+ GNI+ ++E T++ LR R + + ++++P +
Sbjct: 119 AELFGDGNIIFLNNEDTIIAPLRVERWSTRNIVPKEKYKFPPQ 161
>sp|O34693|YLOA_BACSU Uncharacterized protein YloA OS=Bacillus subtilis (strain 168)
GN=yloA PE=2 SV=1
Length = 572
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 20 RLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLME-SGVRLHTTAYARDKKNT 78
+++G R + ++ IF + G+++K+LL S R+H TA A + +
Sbjct: 20 KIMGGRITKIHQPYKHDVIFH------IRAKGKNQKLLLSAHPSYSRVHITAQAYENPSE 73
Query: 79 PSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQF-GLGMNAHYVILELYAQ-----GNILL 132
P F + LRKHI +E + Q G DRI++F + +LY + NI+L
Sbjct: 74 PPMFCMLLRKHIEGGFIEKIEQAGLDRIMIFHIKSRNEIGDETVRKLYVEIMGRHSNIIL 133
Query: 133 TDSEFTVL 140
TD+ V+
Sbjct: 134 TDAAENVI 141
Score = 34.7 bits (78), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 565 SSENYLVISGRDAQQNEMIVKRYMSKGDVYVHADLHGASSTVIKNHRPEQPVPPLTLNQA 624
S+ ++ G++ +QNE + R ++ D+++H S VI++ P++ T+ +A
Sbjct: 457 STSGLTILVGKNNRQNEYLTTRVAARDDIWLHTKDIPGSHVVIRSSEPDEQ----TIMEA 512
Query: 625 GCFTVCHSQAWDSKMV 640
S+A DS V
Sbjct: 513 ATIAAYFSKAKDSSSV 528
>sp|Q99996|AKAP9_HUMAN A-kinase anchor protein 9 OS=Homo sapiens GN=AKAP9 PE=1 SV=3
Length = 3911
Score = 34.3 bits (77), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 330 QIYDEFCPLLLNQFRSREFVKFETFDAA--LDEFYSKIESQRAEQQ------HKAKEDAA 381
Q++ E +LL FR+ E T DA L+ +I+ Q E Q KA +
Sbjct: 3036 QVFLEERSVLLAAFRT-ELTALGTTDAVGLLNCLEQRIQEQGVEYQAAMECLQKADRRSL 3094
Query: 382 FHKLNKIHMDQENRVHTLKQEVDRSVKMAELIEYNLEDVDAAILAVRVALAN 433
++ +H R TLK+E + EL+EYN++ + +L ++V L++
Sbjct: 3095 LSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVELSS 3146
>sp|Q5HQB9|ATL_STAEQ Bifunctional autolysin OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=atl PE=3 SV=1
Length = 1335
Score = 33.9 bits (76), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 323 TESGSSTQIYDEFCPLLLNQFRSREFVKFETFDAALDEF--YSKIESQRAEQQHKAKEDA 380
T + S TQ Y + Q + ++ + T+DA+LDE Y++I S + +QQ + +DA
Sbjct: 63 TTNVSGTQTYQDPT-----QVQPKQDTQSTTYDASLDEMSTYNEISSNQ-KQQSLSTDDA 116
Query: 381 AFHKLNKIHMDQENRVHTLKQEVDRSVKMAELIE 414
++ N + +Q+ + L QE S +L E
Sbjct: 117 NQNQTNSVTKNQQEETNDLTQEDKTSTDTNQLQE 150
>sp|O33635|ATL_STAEP Bifunctional autolysin OS=Staphylococcus epidermidis GN=atl PE=1
SV=1
Length = 1335
Score = 33.9 bits (76), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 323 TESGSSTQIYDEFCPLLLNQFRSREFVKFETFDAALDEF--YSKIESQRAEQQHKAKEDA 380
T + S TQ Y + Q + ++ + T+DA+LDE Y++I S + +QQ + +DA
Sbjct: 63 TTNVSGTQTYQDPT-----QVQPKQDTQSTTYDASLDEMSTYNEISSNQ-KQQSLSTDDA 116
Query: 381 AFHKLNKIHMDQENRVHTLKQEVDRSVKMAELIE 414
++ N + +Q+ + L QE S +L E
Sbjct: 117 NQNQTNSVTKNQQEETNDLTQEDKTSTDTNQLQE 150
>sp|Q8CPQ1|ATL_STAES Bifunctional autolysin OS=Staphylococcus epidermidis (strain ATCC
12228) GN=atl PE=3 SV=1
Length = 1335
Score = 33.9 bits (76), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 323 TESGSSTQIYDEFCPLLLNQFRSREFVKFETFDAALDEF--YSKIESQRAEQQHKAKEDA 380
T + S TQ Y + Q + ++ + T+DA+LDE Y++I S + +QQ + +DA
Sbjct: 63 TTNVSGTQTYQDPT-----QVQPKQDTQSTTYDASLDEMSTYNEISSNQ-KQQSLSTDDA 116
Query: 381 AFHKLNKIHMDQENRVHTLKQEVDRSVKMAELIE 414
++ N + +Q+ + L QE S +L E
Sbjct: 117 NQNQTNSVTKNQQEETNDLTQEDKTSTDTNQLQE 150
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 343,382,700
Number of Sequences: 539616
Number of extensions: 15117298
Number of successful extensions: 55462
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 254
Number of HSP's that attempted gapping in prelim test: 54571
Number of HSP's gapped (non-prelim): 1091
length of query: 934
length of database: 191,569,459
effective HSP length: 127
effective length of query: 807
effective length of database: 123,038,227
effective search space: 99291849189
effective search space used: 99291849189
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)