Query 002338
Match_columns 934
No_of_seqs 287 out of 1050
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 22:15:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3doa_A Fibrinogen binding prot 100.0 6.4E-45 2.2E-49 397.4 26.1 264 6-365 3-280 (288)
2 3twl_A Formamidopyrimidine-DNA 95.7 0.28 9.5E-06 53.7 17.4 50 239-291 170-222 (310)
3 2xzf_A Formamidopyrimidine-DNA 95.0 0.36 1.2E-05 51.9 15.3 50 239-291 155-207 (271)
4 1ee8_A MUTM (FPG) protein; bet 94.0 0.98 3.4E-05 48.3 15.6 50 239-291 145-197 (266)
5 1k82_A Formamidopyrimidine-DNA 93.8 1.1 3.7E-05 48.0 15.5 50 239-291 152-204 (268)
6 3u6p_A Formamidopyrimidine-DNA 93.4 1.5 5.2E-05 47.0 15.8 50 239-291 157-209 (273)
7 3r8n_M 30S ribosomal protein S 89.7 0.55 1.9E-05 43.9 6.4 47 238-287 12-58 (114)
8 3j20_O 30S ribosomal protein S 86.5 1.1 3.8E-05 43.7 6.5 48 238-288 19-66 (148)
9 3iz6_M 40S ribosomal protein S 86.3 1.1 3.8E-05 43.9 6.4 48 237-287 23-70 (152)
10 2xzm_M RPS18E; ribosome, trans 85.5 1.3 4.5E-05 43.5 6.5 48 239-289 27-74 (155)
11 2vqe_M 30S ribosomal protein S 84.9 0.78 2.7E-05 43.6 4.4 49 238-289 13-61 (126)
12 3u5c_S 40S ribosomal protein S 82.9 1.3 4.5E-05 43.1 5.1 45 240-287 28-72 (146)
13 3vk8_A Probable formamidopyrim 79.7 2.6 8.9E-05 45.7 6.7 51 238-291 155-209 (295)
14 3w0f_A Endonuclease 8-like 3; 78.3 3.2 0.00011 44.8 6.8 51 239-292 176-229 (287)
15 1k3x_A Endonuclease VIII; hydr 75.8 3.1 0.00011 44.2 5.9 50 239-291 152-204 (262)
16 1gmj_A ATPase inhibitor; coile 42.6 1.3E+02 0.0043 26.5 8.7 51 350-408 21-72 (84)
17 1mu5_A Type II DNA topoisomera 42.3 1.2E+02 0.004 34.9 11.2 51 239-292 254-305 (471)
18 1tdh_A NEI endonuclease VIII-l 41.1 8.1 0.00028 43.0 1.2 34 238-271 159-195 (364)
19 3o71_B Peptide of deleted in c 28.0 21 0.00073 24.3 1.1 13 586-598 7-19 (27)
No 1
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp}
Probab=100.00 E-value=6.4e-45 Score=397.36 Aligned_cols=264 Identities=19% Similarity=0.268 Sum_probs=195.8
Q ss_pred CCHHHHHHHHHHHhhhcCCceeEEEecCCCEEEEEEeeCCCCccCCCCceEEEEEe--cc-ceEEeecccCCCCCCCcHH
Q 002338 6 MNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLME--SG-VRLHTTAYARDKKNTPSGF 82 (934)
Q Consensus 6 ms~lDv~a~v~EL~~L~G~RI~nIY~~~~~t~llk~~~~~g~~~~~~~~k~~Llie--sG-~RiHlT~~~~~k~~~Ps~F 82 (934)
||++||+|++.||..|+|+||.||||+++++++|+|++++ ++..|+|+ ++ +|||+|++.+++|..||+|
T Consensus 3 ~d~~~l~a~~~EL~~l~g~ri~kIyq~~~~~l~l~l~~~~--------~~~~L~ls~~p~~~ri~lt~~~~~~p~~p~~F 74 (288)
T 3doa_A 3 YDGLFTKKMVESLQFLTTGRVHKINQPDNDTILMVVRQNR--------QNHQLLLSIHPNFSRLQLTTKKYDNPFNPPMF 74 (288)
T ss_dssp SCHHHHHHHHHHHGGGTTCEEEEEEEEETTEEEEEEEETT--------EEEEEEEECCTTTCEEEEECC-------CCHH
T ss_pred ccHHHHHHHHHHHHhhhCceEEEEEcCCCcEEEEEEEcCC--------CceEEEEEECCCceEEEEcCCCCCCCCCCcHH
Confidence 9999999999999669999999999999999999999874 35555555 44 9999999999999999999
Q ss_pred HHHHHHHccCCceeEEEeeCCCeEEEEEEeeC----Cc-eEEEEEEEecC-ceEEEEcCCCcEEeeecccccC-CCcccc
Q 002338 83 TLKLRKHIRTRRLEDVRQLGYDRIILFQFGLG----MN-AHYVILELYAQ-GNILLTDSEFTVLTLLRSHRDD-DKGVAI 155 (934)
Q Consensus 83 ~m~LRKhL~g~RL~~V~Qlg~DRIV~~~f~~G----~~-~~~LIvEL~gr-gNIILtD~~~~IL~~lR~~~~~-~~~~~i 155 (934)
||.|||||+|+||++|+|+|+||||.|+|+.+ +. .++||+||||+ |||||||++++||+++|+++.+ .+.|.|
T Consensus 75 ~m~LRk~L~g~ri~~i~Q~~~DRIv~~~f~~~~e~g~~~~~~Li~El~gr~SNiIL~d~~~~Il~~lr~v~~~~~~~R~i 154 (288)
T 3doa_A 75 ARVFRKHLEGGIIESIKQIGNDRRIEIDIKSKDEIGDTIYRTVILEIMGKHSNLILVDENRKIIEGFKHLTPNTNHYRTV 154 (288)
T ss_dssp HHHHHHHHTTCEEEEEEESTTSSEEEEEEEEECTTSCEEEEEEEEECCGGGCEEEEEETTCBEEEESSCBCC-----CCB
T ss_pred HHHHHHHhCCCEEEEEEECCCceEEEEEEeeccccCCccceEEEEEEcCCCceEEEEcCCCcEeeeeeccCcccccccee
Confidence 99999999999999999999999999999964 33 79999999999 6999999999999999999874 457899
Q ss_pred ccCCcccCcccc-ccccCC--hhhhHHhhccCCCCCCCCCCCccCCCCCcccccccccCCCCCCCccccccccCCCCCCC
Q 002338 156 MSRHRYPTEICR-VFERTT--ASKLHAALTSSKEPDANEPDKVNEDGNNVSNASKENLGGQKGGKSFDLSKNSNKNSNDG 232 (934)
Q Consensus 156 ~~g~~Yp~~~~~-~~~p~~--~~kl~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~e~~~~~~~~~~~d~~~~~~~~~~~~ 232 (934)
.+|.+|.+|+.. ..+|.+ .+.+.+.+.
T Consensus 155 ~pG~~Y~~Pp~~~k~~p~~~~~e~~~~~l~-------------------------------------------------- 184 (288)
T 3doa_A 155 MPGFNYEAPPTQHKINPYDITGAEVLKYID-------------------------------------------------- 184 (288)
T ss_dssp STTSBCCCCCCCCCBCGGGCCHHHHGGGCC--------------------------------------------------
T ss_pred cCCCcccCCccccCCCcccCCHHHHHHHHh--------------------------------------------------
Confidence 999999766642 233332 233322210
Q ss_pred ccCCchhHHHHHhhhcCCCHHHHHHH-HHHcCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEEe
Q 002338 233 ARAKQPTLKTVLGEALGYGPALSEHI-ILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFEDWLQDVISGDIVPEGYILM 311 (934)
Q Consensus 233 ~~~~~~~lk~~L~~~~g~gp~laeei-~~ragl~~~~~~~~~~~l~~~~~~~L~~al~~~~~~l~~l~~~~~~p~gyi~~ 311 (934)
..+....+.+...+.||||.+|+|+ |+|+|.+. ..++.+ +.+++..+.. ...|+.| .
T Consensus 185 -~~~~~l~~~l~~~~~G~s~~la~El~~~ra~~~~---------------~~l~~~---~~~~~~~~~~-~~~p~i~--~ 242 (288)
T 3doa_A 185 -FNAGNIAKQLLNQFEGFSPLITNEIVSRRQFMTS---------------STLPEA---FDEVMAETKL-PPTPIFH--K 242 (288)
T ss_dssp -GGGCCHHHHHHHHBTTCCHHHHHHHHTTSSSCST---------------THHHHH---HHHHHHHHTS-CCCCEEC---
T ss_pred -hCcchHHHHHHHHcCCCCHHHHHHHHHHHcCCcH---------------HHHHHH---HHHHHHHhhc-CCCcEEE--e
Confidence 0112234555556679999999999 99998531 234444 5666777764 3335432 1
Q ss_pred cccCCCCCCCCCCCCCCCccceeeeeecccccccccccccccHHHHHHHHHHHH
Q 002338 312 QNKHLGKDHPPTESGSSTQIYDEFCPLLLNQFRSREFVKFETFDAALDEFYSKI 365 (934)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~f~P~~l~q~~~~~~~~f~sf~~AlDeffs~~ 365 (934)
+. . ....+|+||+|.+|.+ +...|+||++|||+||...
T Consensus 243 ~~--~-------------~~~~~f~~~~l~~~~~-~~~~f~s~s~~Ld~yy~~k 280 (288)
T 3doa_A 243 NH--E-------------TGKEDFYFIKLNQFND-DTVTYDSLNDLLDRFYDAR 280 (288)
T ss_dssp CT--T-------------TCCCCEESSCCTTCCS-CCEECSSHHHHHHHHTCC-
T ss_pred CC--C-------------CCceEEEEEechhccC-CceeCCCHHHHHHHHHHHh
Confidence 11 0 0234899999999876 6678999999999999875
No 2
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=95.70 E-value=0.28 Score=53.74 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=40.5
Q ss_pred hHHHHHh---hhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHH
Q 002338 239 TLKTVLG---EALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKF 291 (934)
Q Consensus 239 ~lk~~L~---~~~g~gp~laeei~~ragl~~~~~~~~~~~l~~~~~~~L~~al~~~ 291 (934)
.++.+|. .+.|+|..++.|+|++|||.|..+.. .|+.+++.+|+.++..+
T Consensus 170 ~IK~~LLDQ~vvaGIGNiYadEiLf~AgIhP~~~a~---~Ls~~e~~~L~~~i~~v 222 (310)
T 3twl_A 170 TIKPLLLDQGYISGIGNWIADEVLYQARIHPLQTAS---SLSKEQCEALHTSIKEV 222 (310)
T ss_dssp BHHHHHHCTTTSBSCCHHHHHHHHHHTTCCTTSBGG---GCCHHHHHHHHHHHHHH
T ss_pred hHHHHHhcCccccCCcHHHHHHHHHHcCCCcCCCcc---cCCHHHHHHHHHHHHHH
Confidence 4555554 36699999999999999999998764 68999999999886544
No 3
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=95.05 E-value=0.36 Score=51.85 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=40.3
Q ss_pred hHHHHHh---hhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHH
Q 002338 239 TLKTVLG---EALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKF 291 (934)
Q Consensus 239 ~lk~~L~---~~~g~gp~laeei~~ragl~~~~~~~~~~~l~~~~~~~L~~al~~~ 291 (934)
.+|.+|. .+.|+|..++.|+|++|||.|..+.. .|+++++.+|+.++..+
T Consensus 155 ~IK~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~---~Ls~~~~~~L~~~i~~v 207 (271)
T 2xzf_A 155 KIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETN---QLIESSIHLLHDSIIEI 207 (271)
T ss_dssp BHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGG---GCCHHHHHHHHHHHHHH
T ss_pred cHHHHHhcCCeecccChhHHHHHHHHcCCCcCCCcc---cCCHHHHHHHHHHHHHH
Confidence 4555554 35699999999999999999998764 68999999999886543
No 4
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=93.96 E-value=0.98 Score=48.30 Aligned_cols=50 Identities=22% Similarity=0.277 Sum_probs=40.3
Q ss_pred hHHHHHh---hhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHH
Q 002338 239 TLKTVLG---EALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKF 291 (934)
Q Consensus 239 ~lk~~L~---~~~g~gp~laeei~~ragl~~~~~~~~~~~l~~~~~~~L~~al~~~ 291 (934)
.+|.+|. .+.|+|..++.|+|++|||.|..+.. .|+++++.+|+.++..+
T Consensus 145 ~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~---~Ls~~~~~~L~~~i~~v 197 (266)
T 1ee8_A 145 PLKALLLDQRLAAGVGNIYADEALFRARLSPFRPAR---SLTEEEARRLYRALREV 197 (266)
T ss_dssp BHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGG---GCCHHHHHHHHHHHHHH
T ss_pred cHHHHHhccCccccccHhHHHHHHHHcCCCCCCCcc---cCCHHHHHHHHHHHHHH
Confidence 4555554 35699999999999999999998764 68999999999886543
No 5
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=93.77 E-value=1.1 Score=48.02 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=40.5
Q ss_pred hHHHHHh---hhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHH
Q 002338 239 TLKTVLG---EALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKF 291 (934)
Q Consensus 239 ~lk~~L~---~~~g~gp~laeei~~ragl~~~~~~~~~~~l~~~~~~~L~~al~~~ 291 (934)
.+|.+|. .+.|+|..++.|+|++|||.|..+.. .|+++++.+|+.++..+
T Consensus 152 ~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~a~---~Ls~~~~~~L~~~i~~v 204 (268)
T 1k82_A 152 AIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLAS---SLSLAECELLARVIKAV 204 (268)
T ss_dssp BHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGG---GCCHHHHHHHHHHHHHH
T ss_pred cHHHHHhcCCeeeccCchHHHHHHHHcCCCCCCCcc---cCCHHHHHHHHHHHHHH
Confidence 4555553 35699999999999999999998764 68999999999886543
No 6
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=93.36 E-value=1.5 Score=47.00 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=40.4
Q ss_pred hHHHHHh---hhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHH
Q 002338 239 TLKTVLG---EALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKF 291 (934)
Q Consensus 239 ~lk~~L~---~~~g~gp~laeei~~ragl~~~~~~~~~~~l~~~~~~~L~~al~~~ 291 (934)
.+|.+|. .+.|+|..++.|+|++|||.|..+.. .|+++++.+|+.++..+
T Consensus 157 ~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~---~Ls~~~~~~L~~~i~~v 209 (273)
T 3u6p_A 157 SVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAA---SLSSKEIERLHEEMVAT 209 (273)
T ss_dssp BHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGG---GCCHHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCccccccHHHHHHHHHHcCCCccCccc---cCCHHHHHHHHHHHHHH
Confidence 4556554 36699999999999999999998764 58999999999885433
No 7
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=89.72 E-value=0.55 Score=43.87 Aligned_cols=47 Identities=23% Similarity=0.346 Sum_probs=39.8
Q ss_pred hhHHHHHhhhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHH
Q 002338 238 PTLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLA 287 (934)
Q Consensus 238 ~~lk~~L~~~~g~gp~laeei~~ragl~~~~~~~~~~~l~~~~~~~L~~a 287 (934)
..+...|..+.|+|+..|..+|..+|++|+.++. +|+++++.+|...
T Consensus 12 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~---~Lt~~ei~~l~~~ 58 (114)
T 3r8n_M 12 KHAVIALTSIYGVGKTRSKAILAAAGIAEDVKIS---ELSEGQIDTLRDE 58 (114)
T ss_dssp SCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCST---TCCHHHHHHHHHH
T ss_pred CEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcc---cCCHHHHHHHHHH
Confidence 3567778889999999999999999999998875 6899998776544
No 8
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=86.52 E-value=1.1 Score=43.71 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=40.9
Q ss_pred hhHHHHHhhhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHH
Q 002338 238 PTLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAV 288 (934)
Q Consensus 238 ~~lk~~L~~~~g~gp~laeei~~ragl~~~~~~~~~~~l~~~~~~~L~~al 288 (934)
..+..+|..+.|+|+..|..||..+|++++.++. +|+++++++|...+
T Consensus 19 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g---~Lt~~ei~~i~~~i 66 (148)
T 3j20_O 19 KQLRWALTAIKGIGINFATMVCRVAGLDPFMKAG---YLTDEQVKKIEEIL 66 (148)
T ss_dssp SCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTT---BCCHHHHHHHHHHH
T ss_pred CEehhhhhhccCcCHHHHHHHHHHhCCCCCceec---cCCHHHHHHHHHHH
Confidence 3567778899999999999999999999998875 68999988866554
No 9
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=86.27 E-value=1.1 Score=43.88 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=40.3
Q ss_pred chhHHHHHhhhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHH
Q 002338 237 QPTLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLA 287 (934)
Q Consensus 237 ~~~lk~~L~~~~g~gp~laeei~~ragl~~~~~~~~~~~l~~~~~~~L~~a 287 (934)
...+..+|..+.|+|+..|..+|..+|++++.++. +|+++++.+|...
T Consensus 23 ~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g---~Lt~~ei~~l~~~ 70 (152)
T 3iz6_M 23 KQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAG---ELSAEEMDRLMAV 70 (152)
T ss_dssp SSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTT---TSCHHHHHHHHHH
T ss_pred CcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeC---cCCHHHHHHHHHH
Confidence 34577788899999999999999999999998875 6899998775544
No 10
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=85.51 E-value=1.3 Score=43.49 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=40.8
Q ss_pred hHHHHHhhhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHH
Q 002338 239 TLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVA 289 (934)
Q Consensus 239 ~lk~~L~~~~g~gp~laeei~~ragl~~~~~~~~~~~l~~~~~~~L~~al~ 289 (934)
.+..+|..+.|+|+..|..+|..+|++++.++. +|+++++.+|...+.
T Consensus 27 ~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~---~Lt~~ei~~l~~~i~ 74 (155)
T 2xzm_M 27 ITPIALTGIRGIGRRFAYIICKVLKIDPNARAG---LLTEDQCNKITDLIA 74 (155)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSS---CSCHHHHHHHHHHHH
T ss_pred EEEEeeecccccCHHHHHHHHHHcCCCcccccc---cCCHHHHHHHHHHHh
Confidence 466778889999999999999999999998775 689999988766543
No 11
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=84.94 E-value=0.78 Score=43.57 Aligned_cols=49 Identities=20% Similarity=0.296 Sum_probs=41.4
Q ss_pred hhHHHHHhhhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHH
Q 002338 238 PTLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVA 289 (934)
Q Consensus 238 ~~lk~~L~~~~g~gp~laeei~~ragl~~~~~~~~~~~l~~~~~~~L~~al~ 289 (934)
..+...|..+.|+|+..|..+|..+|++|+.++. +|+++++..|...+.
T Consensus 13 k~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~---~Lt~~ei~~l~~~i~ 61 (126)
T 2vqe_M 13 KRVDVALTYIYGIGKARAKEALEKTGINPATRVK---DLTEAEVVRLREYVE 61 (126)
T ss_dssp SBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGG---GCCHHHHHHHHHHHH
T ss_pred cEeeeehhccccccHHHHHHHHHHcCCCcccccC---cCCHHHHHHHHHHHH
Confidence 3566778899999999999999999999998875 689999888766644
No 12
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=82.89 E-value=1.3 Score=43.10 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=37.4
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHH
Q 002338 240 LKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLA 287 (934)
Q Consensus 240 lk~~L~~~~g~gp~laeei~~ragl~~~~~~~~~~~l~~~~~~~L~~a 287 (934)
+..+|..+.|+|+..|..||..+|++++.++. +|+++++.+|...
T Consensus 28 v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g---~Lt~~ei~~l~~~ 72 (146)
T 3u5c_S 28 IVYALTTIKGVGRRYSNLVCKKADVDLHKRAG---ELTQEELERIVQI 72 (146)
T ss_dssp TTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSS---SCCHHHHHHHHHH
T ss_pred hHhhHhhhcCCCHHHHHHHHHHcCCCCCceec---cCCHHHHHHHHHH
Confidence 34457788999999999999999999998875 6899998775544
No 13
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=79.69 E-value=2.6 Score=45.70 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=41.1
Q ss_pred hhHHHHHh---h-hcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHH
Q 002338 238 PTLKTVLG---E-ALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKF 291 (934)
Q Consensus 238 ~~lk~~L~---~-~~g~gp~laeei~~ragl~~~~~~~~~~~l~~~~~~~L~~al~~~ 291 (934)
..++.+|. . +.|+|..++.|+|++|||.|..+.. .|+++++.+|+.++..+
T Consensus 155 ~~Ik~~LLDQ~~~vaGIGNiYa~EiLf~A~I~P~~~~~---~Ls~~~~~~L~~~i~~v 209 (295)
T 3vk8_A 155 QPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGS---NLTDQEIENLWYWIKYE 209 (295)
T ss_dssp SBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGG---GCCHHHHHHHHHHHHHH
T ss_pred chHHHHHhcCCcccccccHHHHHHHHHHcCCCccCccc---cCCHHHHHHHHHHHHHH
Confidence 35666654 3 6699999999999999999998764 58999999999885443
No 14
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=78.32 E-value=3.2 Score=44.82 Aligned_cols=51 Identities=29% Similarity=0.414 Sum_probs=41.9
Q ss_pred hHHHHHh---hhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHHH
Q 002338 239 TLKTVLG---EALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFE 292 (934)
Q Consensus 239 ~lk~~L~---~~~g~gp~laeei~~ragl~~~~~~~~~~~l~~~~~~~L~~al~~~~ 292 (934)
.+|.+|. .+.|+|..++.|+|++|||.|..+.. .|+++++.+|+.++..+-
T Consensus 176 ~IK~~LLDQ~viaGiGNIYa~EiLf~AgI~P~~~~~---~Ls~~~~~~L~~ai~~Vl 229 (287)
T 3w0f_A 176 MLCDVLLDQRVLPGVGNIIKNEALFDSGLHPAVKVC---QLSDKQACHLVKMTRDFS 229 (287)
T ss_dssp BHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTCBGG---GSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHhcCCccccccHHHHHHHHHHccCCccCccc---cCCHHHHHHHHHHHHHHH
Confidence 4666654 35699999999999999999998764 689999999999877653
No 15
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=75.82 E-value=3.1 Score=44.25 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=40.3
Q ss_pred hHHHHHh---hhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHH
Q 002338 239 TLKTVLG---EALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKF 291 (934)
Q Consensus 239 ~lk~~L~---~~~g~gp~laeei~~ragl~~~~~~~~~~~l~~~~~~~L~~al~~~ 291 (934)
.++.+|- .+.|+|..++.|+|++|||.|..+.. .|+++++.+|+.++..+
T Consensus 152 ~Ik~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~---~Ls~~~~~~L~~~i~~v 204 (262)
T 1k3x_A 152 QFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAK---DLNAAQLDALAHALLEI 204 (262)
T ss_dssp CHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGG---GSCHHHHHHHHHHHHHH
T ss_pred cHHHHHhcCCeeecccHHHHHHHHHHcCCCcCCCcc---cCCHHHHHHHHHHHHHH
Confidence 4555553 35699999999999999999998764 58999999999886544
No 16
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=42.62 E-value=1.3e+02 Score=26.46 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=27.7
Q ss_pred ccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002338 350 KFETFDAALDEFYSK-IESQRAEQQHKAKEDAAFHKLNKIHMDQENRVHTLKQEVDRSVK 408 (934)
Q Consensus 350 ~f~sf~~AlDeffs~-~e~qk~~~~~~~~e~~~~kkLek~~~~qe~ri~~L~~e~e~~~~ 408 (934)
.|.....|.+++|-. .+.+.+ ..++++|..-+..|...|+.|+++.+..+.
T Consensus 21 aFgKrEaA~Ee~YfrqkekEqL--------~~LKkkl~~el~~h~~ei~~le~~i~rhk~ 72 (84)
T 1gmj_A 21 AFGKREQAEEERYFRARAKEQL--------AALKKHKENEISHHAKEIERLQKEIERHKQ 72 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777766543 333222 234455555556666666666666555443
No 17
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=42.30 E-value=1.2e+02 Score=34.86 Aligned_cols=51 Identities=31% Similarity=0.440 Sum_probs=41.5
Q ss_pred hHHHHHhh-hcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHHH
Q 002338 239 TLKTVLGE-ALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFE 292 (934)
Q Consensus 239 ~lk~~L~~-~~g~gp~laeei~~ragl~~~~~~~~~~~l~~~~~~~L~~al~~~~ 292 (934)
++..+|.. |.++|...|+++|..+|+++..++. .++.+++.+|+++++.+.
T Consensus 254 ~~~~fl~~~f~~v~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~ 305 (471)
T 1mu5_A 254 TIKEFLVNEFQSIGDTTADKILELAGLKPNKKVK---NLTEEEITRLVETFKKYE 305 (471)
T ss_dssp BHHHHHTTSSSSCCHHHHHHHHHHTTCCTTSBGG---GCCTTHHHHHHHHHHHCC
T ss_pred chHHhhhccccccCHHHHHHHHHhcCCCCCCChh---hcCHHHHHHHHHHHHhcc
Confidence 46666654 7799999999999999999987653 478889999999977663
No 18
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=41.12 E-value=8.1 Score=43.05 Aligned_cols=34 Identities=21% Similarity=0.126 Sum_probs=27.5
Q ss_pred hhHHHHHh---hhcCCCHHHHHHHHHHcCCCCCCccc
Q 002338 238 PTLKTVLG---EALGYGPALSEHIILDTGLVPNMKLS 271 (934)
Q Consensus 238 ~~lk~~L~---~~~g~gp~laeei~~ragl~~~~~~~ 271 (934)
..++.+|. .+.|+|..++.|+|++|||.|..+..
T Consensus 159 ~~IK~~LLDQ~vVAGIGNIYadEiLF~AgIhP~r~a~ 195 (364)
T 1tdh_A 159 RPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKAR 195 (364)
T ss_dssp SBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHH
T ss_pred ccHHHHHhcCCeeeccchHHHHHHHHHCcCCCCCChh
Confidence 34666654 36699999999999999999998764
No 19
>3o71_B Peptide of deleted in colorectal cancer; protein-peptide complex, kinase, DCC, transferase-protein BI complex; 1.95A {Rattus norvegicus}
Probab=27.99 E-value=21 Score=24.28 Aligned_cols=13 Identities=15% Similarity=0.562 Sum_probs=10.4
Q ss_pred HhcCCCCEEEEec
Q 002338 586 RYMSKGDVYVHAD 598 (934)
Q Consensus 586 Kya~~~Diw~HAd 598 (934)
+-++|-|+|+|-+
T Consensus 7 kDlkppdlwihhe 19 (27)
T 3o71_B 7 KDLRPPDLWIHHE 19 (27)
T ss_pred CCCCCcceeeehh
Confidence 4578999999974
Done!