BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002340
(934 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51612|XPC_MOUSE DNA repair protein complementing XP-C cells homolog OS=Mus musculus
GN=Xpc PE=1 SV=2
Length = 930
Score = 278 bits (711), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 230/717 (32%), Positives = 336/717 (46%), Gaps = 88/717 (12%)
Query: 174 DKELAELVHKVHLLCLLARGRLIDSVCDDPLIQASLLSLLPSYLLKISEVSKLTANALSP 233
+KE+ E +HKVHLLCLLA G +S+C P + A LS++P K+ + A LS
Sbjct: 194 NKEVQENMHKVHLLCLLASGFYRNSICRQPDLLAIGLSIIPIRFTKVP-LQDRDAYYLSN 252
Query: 234 IVSWFHDNFHVRSSVSTRRSFHSDLAHALESREGT-----PEEIAALSVALFRALKLTTR 288
+V WF F V + +S S DL LE R EE+ + + + RAL+L TR
Sbjct: 253 LVKWFIGTFTVNADLSA--SEQDDLQTTLERRIAIYSARDNEELVHIFLLILRALQLLTR 310
Query: 289 FVSILDVASLKPEADKNVSSNQDSSRVGGG-----------IFNAPTL-MVAKPEEVLAS 336
V L LK K S++++S G G N PT K EE L+
Sbjct: 311 LVLSLQPIPLKSAVTKGRKSSKETSVEGPGGSSELSSNSPESHNKPTTSRRIKEEETLSE 370
Query: 337 -------------------PVKSFSCDKKENVCETSSKGSPECKYSSPKSNNTQSKKSPV 377
+ SC + E E +G P + + + ++S
Sbjct: 371 GRGKATARGKRGTGTAGSRQRRKPSCSEGEEA-EQKVQGRPHARKRRVAAKVSYKEESES 429
Query: 378 SCELSSGNLDPSSSMACSDISEACHPKEKSQALKRKGDLEFEMQLEMALSATNVATSKSN 437
S + +PSS E C P + Q KR Q A S + T + +
Sbjct: 430 DGAGSGSDFEPSSGEGQHSSDEDCEPGPRKQ--KRAS----APQRTKAGSKSASKTQRGS 483
Query: 438 ICSDVKDLNSNSSTVLPVKRLKKIESGESSTSCLGISTAVGSRKVGAPLYWAEVYCSGEN 497
C + SS+ KR KK+ SG + + RK W EVYC +
Sbjct: 484 QC-EPSSFPEASSSSSGCKRGKKVSSG---------AEEMADRKPAGVDQWLEVYCEPQ- 532
Query: 498 LTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCG-AKDVTRRYCMKWYRIAS 556
KWV VD + ++ Q V A K + Y+V G +DVT+RY W
Sbjct: 533 --AKWVCVDCVHGVVG--QPVACYKYATK-PMTYVVGIDSDGWVRDVTQRYDPAWMTATR 587
Query: 557 K-RVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALTEPLPT 615
K RV++ WW L P R S + +R ED E + + L +PLPT
Sbjct: 588 KCRVDAEWWAETLRPYR------------------SLLTEREKKEDQEFQAKHLDQPLPT 629
Query: 616 NQQAYKNHQLYVIERWLNKYQILYPK-GPILGFCSGHAVYPRSCVQTLKTKERWLREALQ 674
+ YKNH LY ++R L K+Q +YP+ +LG+C G AVY R CV TL +++ WL++A
Sbjct: 630 SISTYKNHPLYALKRHLLKFQAIYPETAAVLGYCRGEAVYSRDCVHTLHSRDTWLKQARV 689
Query: 675 VKANEVPVKVIKN-SSKSKKGQDFEPEDYDEVDARGNIELYGKWQLEPLRLPSAVNGIVP 733
V+ EVP K++K S++++K + EP+ +D D + LYG WQ E + P AV+G VP
Sbjct: 690 VRLGEVPYKMVKGFSNRARKARLSEPQLHDHND----LGLYGHWQTEEYQPPIAVDGKVP 745
Query: 734 RNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNGRSTPVFDGIV 793
RNE G V ++ +P G V + LP + VA++L ID A+ GF+F G PV DG +
Sbjct: 746 RNEFGNVYLFLPSMMPVGCVQMTLPNLNRVARKLGIDCVQAITGFDFHGGYCHPVTDGYI 805
Query: 794 VCAEFKDTILEAYAEEEEKREAEEKKRREAQATSRWYQLLSSIVTRQRLNNCYGNNS 850
VC EF+D +L A+ E+ E +EK+++E +A W L+ ++ R+RL YG S
Sbjct: 806 VCEEFRDVLLAAWENEQAIIEKKEKEKKEKRALGNWKLLVRGLLIRERLKLRYGAKS 862
>sp|Q01831|XPC_HUMAN DNA repair protein complementing XP-C cells OS=Homo sapiens GN=XPC
PE=1 SV=4
Length = 940
Score = 232 bits (591), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/367 (37%), Positives = 203/367 (55%), Gaps = 32/367 (8%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCG-AKDVTRR 546
W EV+C E KWV VD + ++ Q + A K + Y+V G +DVT+R
Sbjct: 531 WLEVFCEQEE---KWVCVDCVHGVVG--QPLTCYKYATK-PMTYVVGIDSDGWVRDVTQR 584
Query: 547 YCMKWYRIASK-RVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELE 605
Y W + K RV++ WW L P + S DR ED+E +
Sbjct: 585 YDPVWMTVTRKCRVDAEWWAETLRPYQ------------------SPFMDREKKEDLEFQ 626
Query: 606 TRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPK-GPILGFCSGHAVYPRSCVQTLKT 664
+ + +PLPT YKNH LY ++R L KY+ +YP+ ILG+C G AVY R CV TL +
Sbjct: 627 AKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIYPETAAILGYCRGEAVYSRDCVHTLHS 686
Query: 665 KERWLREALQVKANEVPVKVIKN-SSKSKKGQDFEPEDYDEVDARGNIELYGKWQLEPLR 723
++ WL++A V+ EVP K++K S++++K + EP+ +E D + L+G WQ E +
Sbjct: 687 RDTWLKKARVVRLGEVPYKMVKGFSNRARKARLAEPQLREEND----LGLFGYWQTEEYQ 742
Query: 724 LPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNG 783
P AV+G VPRNE G V ++ +P G V L LP ++ VA++L+ID A+ GF+F G
Sbjct: 743 PPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNLPNLHRVARKLDIDCVQAITGFDFHGG 802
Query: 784 RSTPVFDGIVVCAEFKDTILEAYAEEEEKREAEEKKRREAQATSRWYQLLSSIVTRQRLN 843
S PV DG +VC EFKD +L A+ E+ E +EK+++E +A W L ++ R+RL
Sbjct: 803 YSHPVTDGYIVCEEFKDVLLTAWENEQAVIERKEKEKKEKRALGNWKLLAKGLLIRERLK 862
Query: 844 NCYGNNS 850
YG S
Sbjct: 863 RRYGPKS 869
>sp|Q24595|XPC_DROME DNA repair protein complementing XP-C cells homolog OS=Drosophila
melanogaster GN=mus210 PE=1 SV=2
Length = 1293
Score = 213 bits (543), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 128/372 (34%), Positives = 189/372 (50%), Gaps = 36/372 (9%)
Query: 479 SRKVGAPLYWAEVYCSGENLTGKWVHVDAANAIIDGEQK-VEAAAAACKTSLRYIVAFAG 537
+RK A W EV+ E +W+ +D + G+ V+ L Y+ AF
Sbjct: 952 NRKTDASDMWVEVWSDVEE---QWICID----LFKGKLHCVDTIRKNATPGLAYVFAFQD 1004
Query: 538 CGA-KDVTRRYCMKWYRIASK-RVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVAD 595
+ KDVT RYC W K RV AW D +AP +
Sbjct: 1005 DQSLKDVTARYCASWSTTVRKARVEKAWLDETIAPYLGRRT------------------K 1046
Query: 596 RNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPK-GPILGFCSGHAVY 654
R+ ED +L +PLP + +K+H LYV+ER L K+Q LYP P LGF G AVY
Sbjct: 1047 RDITEDDQLRRIHSDKPLPKSISEFKDHPLYVLERHLLKFQGLYPPDAPTLGFIRGEAVY 1106
Query: 655 PRSCVQTLKTKERWLREALQVKANEVPVKVIKNSSKSKKGQDFEPEDYDEVDARGNIELY 714
R CV L ++E WL+ A VK E P KV+K K + +D +E++
Sbjct: 1107 SRDCVHLLHSREIWLKSARVVKLGEQPYKVVKARPKWDRLTRTVIKDQP-------LEIF 1159
Query: 715 GKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPA 774
G WQ + P+A NGIVPRN G V+++ + LP TVHLRLP + + K+L ID A A
Sbjct: 1160 GYWQTQEYEPPTAENGIVPRNAYGNVELFKDCMLPKKTVHLRLPGLMRICKKLNIDCANA 1219
Query: 775 MVGFEFRNGRSTPVFDGIVVCAEFKDTILEAYAEEEEKREAEEKKRREAQATSRWYQLLS 834
+VGF+F G P++DG +VC EF++ + A+ E+++ + +E+++ E + W +L+
Sbjct: 1220 VVGFDFHQGACHPMYDGFIVCEEFREVVTAAWEEDQQVQVLKEQEKYETRVYGNWKKLIK 1279
Query: 835 SIVTRQRLNNCY 846
++ R+RL Y
Sbjct: 1280 GLLIRERLKKKY 1291
Score = 42.0 bits (97), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 27/170 (15%)
Query: 168 RRASAEDKELAELVHKVHLLCLLAR----GRLIDSVCDDPLIQASLLSLLPSYLLKISEV 223
RR + + K+ L+HKV L+C +AR RL+ D L+QA+ L LLPS +E
Sbjct: 370 RRLNRDIKDRQILLHKVSLMCQIARSLKYNRLLSE--SDSLMQAT-LKLLPSRNAYPTER 426
Query: 224 SKLTANALSPIVSWFHD-------NFHVRSSVSTRRSFHSDLAHALESREGT-PEEIAAL 275
L V+WF N + S +T+ + L ++ +E +++ +
Sbjct: 427 G-TELKYLQSFVTWFKTSIKLLSPNLYSAQSPATKEAILEALLEQVKRKEARCKQDMIFI 485
Query: 276 SVALFRALKLTTRFVSILDVASLKPEA-----------DKNVSSNQDSSR 314
+AL R + + R + L L+P A DKN S +S R
Sbjct: 486 FIALARGMGMHCRLIVNLQPMPLRPAASDLIPIKLRPDDKNKSQTVESER 535
>sp|Q10445|RHP41_SCHPO DNA repair protein rhp41 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp41 PE=3 SV=1
Length = 638
Score = 142 bits (359), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 111/376 (29%), Positives = 171/376 (45%), Gaps = 52/376 (13%)
Query: 485 PLYWAEVYCSGENLTGKWVHVDAAN--AIIDGEQKVEAAAAACKTSLRYIVAFAGCG-AK 541
P++W E + KWV VD ++I ++ E A++ + Y+ A G K
Sbjct: 302 PVFWVEAFNKA---MQKWVCVDPFGDASVIGKYRRFEPASSDHLNQMTYVFAIEANGYVK 358
Query: 542 DVTRRYCMKWYRIASKRV-----NSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADR 596
DVTR+YC+ +Y+I RV AW + + + + G D F D
Sbjct: 359 DVTRKYCLHYYKILKNRVEIFPFGKAWMNRIFSKI-----GKPRD----------FYNDM 403
Query: 597 NSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPK---GPILGFCSGHAV 653
+++ED EL +E +P N Q K+H L+V+ER L K Q + G I V
Sbjct: 404 DAIEDAELLRLEQSEGIPRNIQDLKDHPLFVLERHLKKNQAIKTGKSCGRINTKNGVELV 463
Query: 654 YPRSCVQTLKTKERWLREALQVKANEVPVKVIKNSSKSKKGQDFEPEDYDEVDARGNIEL 713
YPR V + E W R+ +K P+K +KN K + L
Sbjct: 464 YPRKYVSNGFSAEHWYRKGRIIKPGAQPLKHVKNGDKV-------------------LPL 504
Query: 714 YGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAP 773
Y + + V IVP+N G +D++ LP G H R + AK LEID A
Sbjct: 505 YDEEATQLYTPKPVVANIVPKNAYGNIDLYVPSMLPYGAYHCRKRCALAAAKFLEIDYAK 564
Query: 774 AMVGFEFRNGRSTPVFDGIVVCAEFKDTILEAYAEE--EEKREAEEKKRREAQATSRWYQ 831
A+VGF+F+ S P +G+VV +++ I + AEE +E++EAE + R+ W +
Sbjct: 565 AVVGFDFQRKYSKPKLEGVVVSKRYEEAI-DLIAEEIDQEEKEAEARNVRKT-CLLLWKR 622
Query: 832 LLSSIVTRQRLNNCYG 847
L++ + RQR+ YG
Sbjct: 623 LITGLRIRQRVFEEYG 638
>sp|P87235|RHP42_SCHPO DNA repair protein rhp42 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp42 PE=3 SV=1
Length = 686
Score = 117 bits (292), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 173/389 (44%), Gaps = 51/389 (13%)
Query: 485 PLYWAEVYCSGENLTGKWVHVDAA--NAIIDGEQ---KVEAAAAACKTSLRYIVAFAG-- 537
P++W E+Y E KW+ VDA N + + + + A A K IVA
Sbjct: 323 PIFWTEIYDQSEK---KWIAVDAVVLNGVYTNDMTWFEPKGAYAESKHLRMGIVAAYDND 379
Query: 538 CGAKDVTRRYCMKWYRIASKRVNSAWWDAVLAPLRELESGATGDLNVE-SSAKDSFVADR 596
AKDVT RY D + L+++ + D + A +A R
Sbjct: 380 LYAKDVTLRYT----------------DYQSSRLKKIRHVSFADKYFDFYKAIFGQLAKR 423
Query: 597 NS-----LEDMELETRALTEPL--PTNQQAYKNHQLYVIERWLNKYQILYPKG-PILGFC 648
N E+ ELE++ P+ P + +KNH +V+ R L + + L P P+
Sbjct: 424 NKDAEDIYEEKELESKV---PIREPKSFADFKNHPEFVLIRHLRREEALLPNAKPVKTAT 480
Query: 649 SGHA-------VYPRSCVQTLKTKERWLREALQVKANEVPVKVIKNSSKS---KKGQDFE 698
G+ VY R V KT E + +E +K E P K++K + + K+ +F
Sbjct: 481 FGNGKKATSEEVYLRKDVVICKTPENYHKEGRVIKEGEQPRKMVKARAVTISRKREHEFR 540
Query: 699 PEDYDEVDARGNIELYGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLP 758
+ +E +G LY Q E P +GI+P+N G +D + E +P G HL
Sbjct: 541 VAETNEPVLQG---LYSSDQTELYVPPPIKDGIIPKNGYGNMDCFVESMIPKGAAHLPYR 597
Query: 759 RVYSVAKRLEIDSAPAMVGFEFRNGRSTPVFDGIVVCAEFKDTILEAYAEEEEKREAEEK 818
+ +AK+L ID A A+ GFEFR R+ PV GI+V E + E + E E+ R +++
Sbjct: 598 GIAKIAKKLNIDYADAVTGFEFRKHRAIPVTTGIIVPEESAQMVYEEFLECEKIRIEKQQ 657
Query: 819 KRREAQATSRWYQLLSSIVTRQRLNNCYG 847
+ +W LL+++ R+R+ Y
Sbjct: 658 MKERKIIYGQWKHLLNALRIRKRIEEQYA 686
>sp|P14736|RAD4_YEAST DNA repair protein RAD4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD4 PE=1 SV=3
Length = 754
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 106/410 (25%), Positives = 174/410 (42%), Gaps = 55/410 (13%)
Query: 482 VGAPLYWAEVYCSGENLTGKWVHVDAANAI----IDGEQKVEAAAAAC--KTSLRYIVAF 535
V P++W EV+ + + KW+ VD N + K+ AC + LRY++A+
Sbjct: 310 VKYPIFWCEVW---DKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAY 366
Query: 536 -AGCGAKDVTRRYCMKWY-------RIASKRVNSAWWDAVLAPLRELESGATGDLNVESS 587
G +DVTRRY +W RI W+ V+ L + D
Sbjct: 367 DRKYGCRDVTRRYA-QWMNSKVRKRRITKDDFGEKWFRKVITALHHRKRTKIDDY----- 420
Query: 588 AKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKGPILGF 647
ED R +E +P + Q KNH YV+E+ + + QI+ P G+
Sbjct: 421 ------------EDQYFFQRDESEGIPDSVQDLKNHPYYVLEQDIKQTQIVKPGCKECGY 468
Query: 648 CSGHA-------VYPRSCVQTLKTKERWLREALQVKANEVPVKVIKNSSKSKKGQDFEPE 700
H VY + + LK+ +W +K KVIK + KG E E
Sbjct: 469 LKVHGKVGKVLKVYAKRDIADLKSARQWYMNGRILKTGSRCKKVIKRTVGRPKG---EAE 525
Query: 701 DYDE-VDARGNIELYGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPR 759
+ DE + + + ELY + PL ++ +G + +N G ++V++ +P + P
Sbjct: 526 EEDERLYSFEDTELY----IPPL---ASASGEITKNTFGNIEVFAPTMIPGNCCLVENPV 578
Query: 760 VYSVAKRLEIDSAPAMVGFEFRNGRST-PVFDGIVVCAEFKDTILEAYAEEEEKREAEEK 818
A+ L ++ APA+ F+F G + PV GIVV ++ I A E +E + +
Sbjct: 579 AIKAARFLGVEFAPAVTSFKFERGSTVKPVLSGIVVAKWLREAIETAIDGIEFIQEDDNR 638
Query: 819 KRREAQATSRWYQLLSSIVTRQRLNNCYGNNSTSQSS-SNFQNVKKTNSN 867
K A W LL + R +LN+ YG + + + + QN+ + N
Sbjct: 639 KEHLLGALESWNTLLLKLRIRSKLNSTYGKIAEEEPNVTKEQNIADNHDN 688
>sp|Q7F0R1|PNG1_ORYSJ Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Oryza sativa subsp. japonica GN=PNG1 PE=2 SV=1
Length = 447
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 547
W E + NL G+W+H+D + D E L Y++A + G +DVT+RY
Sbjct: 296 WTECF---SNLYGRWMHLDPCEGVYDNPLLYEKG---WNKKLDYVIAISKDGVRDVTKRY 349
Query: 548 CMKWYRIASKRV 559
KW+ + S+R+
Sbjct: 350 TRKWHEVLSRRI 361
>sp|Q9FGY9|PNG1_ARATH Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Arabidopsis thaliana GN=PNG1 PE=2 SV=1
Length = 721
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 547
W E Y +W+H+D + D E L Y++A + G DVT+RY
Sbjct: 280 WTECYSHS---LKRWIHLDPCEGVYDKPMLYEKG---WNKKLNYVIAISKDGVCDVTKRY 333
Query: 548 CMKWYRIASKR 558
KW+ + S+R
Sbjct: 334 TKKWHEVLSRR 344
>sp|Q8J2R3|PNG1_GIBMO Protein PNG1 OS=Gibberella moniliformis GN=PNG1 PE=3 SV=1
Length = 450
Score = 41.6 bits (96), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 547
W EVY + +WVHVDA D + + A + Y +AF+ GA DVTRRY
Sbjct: 272 WTEVYSDHQK---RWVHVDACEEAWDNPRLL---AEGWGKKMSYCIAFSIDGATDVTRRY 325
Query: 548 CMK 550
K
Sbjct: 326 VRK 328
>sp|Q4IR87|PNG1_GIBZE Protein PNG1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=PNG1 PE=3 SV=1
Length = 451
Score = 41.2 bits (95), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 547
W EVY + +WVHVDA D + A + Y +AF+ GA DVTRRY
Sbjct: 272 WTEVYSDHQK---RWVHVDACEEAWDNPRLY---AEGWGKKMSYCIAFSIDGATDVTRRY 325
Query: 548 CMK 550
K
Sbjct: 326 VRK 328
>sp|Q2UPS5|PNG1_ASPOR Protein png1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=png1 PE=3 SV=1
Length = 457
Score = 40.4 bits (93), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 547
W E+Y + +WVHVDA D + ++ A K S Y +AF+ GA DVTRRY
Sbjct: 290 WTEIYSEHQR---RWVHVDACEGAWD-QPRLYAEGWGRKMS--YCIAFSIDGATDVTRRY 343
>sp|Q4WHW1|PNG1_ASPFU Protein png1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293
/ CBS 101355 / FGSC A1100) GN=png1 PE=3 SV=1
Length = 455
Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 547
W EVY + +WVHVDA D + L Y +AF+ GA DVTRRY
Sbjct: 288 WTEVYSEHQR---RWVHVDACEGAWD---QPRLYTEGWGRKLSYCIAFSIDGATDVTRRY 341
>sp|Q5B6P3|PNG1_EMENI Protein PNG1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=png1 PE=3 SV=1
Length = 441
Score = 40.0 bits (92), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 547
W EVY + +W+HVDA D + ++ A K S Y +AF+ GA DVTRRY
Sbjct: 275 WTEVYSEHQK---RWIHVDACEETWD-QPRLYAEGWGRKIS--YCIAFSIDGATDVTRRY 328
>sp|Q75D29|PNG1_ASHGO Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=PNG1 PE=3 SV=1
Length = 350
Score = 37.7 bits (86), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 547
W EVY N +WVHVD+ D + + ++ Y++AF+ KDV+RRY
Sbjct: 212 WCEVY---SNALKRWVHVDSCEKSFD---EPHIYSVNWNKAMSYVIAFSNRSVKDVSRRY 265
Query: 548 CMK 550
++
Sbjct: 266 IVR 268
>sp|Q7SI01|PNG1_NEUCR Protein png-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A
/ CBS 708.71 / DSM 1257 / FGSC 987) GN=png-1 PE=3 SV=1
Length = 382
Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 547
W E+Y + +WVHVD+ D + Y++AF+ GA DVTRRY
Sbjct: 207 WTEIYSEHQQ---RWVHVDSCEEAWDMPHMYYKNWG---KKMSYVIAFSREGAVDVTRRY 260
>sp|Q5XI55|NGLY1_RAT Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Rattus norvegicus GN=Ngly1 PE=2 SV=2
Length = 651
Score = 36.6 bits (83), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 547
W EVY + +W+H DA + D E L YI+AF+ DVT RY
Sbjct: 335 WTEVYSPSQQ---RWLHCDACEDVCDKPLLYEIGWGK---KLSYIIAFSKDEVVDVTWRY 388
Query: 548 CMKWYRIASKR 558
K + S+R
Sbjct: 389 SCKHEEVMSRR 399
>sp|Q0VDD8|DYH14_HUMAN Dynein heavy chain 14, axonemal OS=Homo sapiens GN=DNAH14 PE=2 SV=3
Length = 3507
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 41/181 (22%)
Query: 531 YIVAFAGCGAKDVTRRYCM----KWYRI-ASKRVNSAWWDAVLAPLRELESGATG----- 580
+ + GCG K C K YR+ S + + V + + +G G
Sbjct: 2010 FQIGIDGCGKKTCATLACYLTDNKLYRVPISHKCAYIEFKEVFKKVF-IHAGLKGKPTVL 2068
Query: 581 ---DLNVESSAKDSFVADRNSL----------EDMELETRALTEPLPTNQQAYKNHQLYV 627
+LN+E +DSF+ D N + E++EL++ A+ T Q + +++ +
Sbjct: 2069 MVPNLNIE---QDSFLEDLNYIISSGRIPDLFENVELDSIAMKIRYLTEQSGHMDNRQSL 2125
Query: 628 IERW-------LNKYQILYPKGPILGFCSGHAVYPR---SCVQTLKTKERWLREALQVKA 677
+ + L+ + I+ P+GP F VYP SC T+ ERW EAL + A
Sbjct: 2126 LSFFQKRIYKNLHIFVIMSPEGP--SFRQNCRVYPSMISSC--TIDWYERWPEEALLIVA 2181
Query: 678 N 678
N
Sbjct: 2182 N 2182
>sp|Q9JI78|NGLY1_MOUSE Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Mus
musculus GN=Ngly1 PE=1 SV=2
Length = 651
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 547
W EVY + +W+H DA + D E L YI+AF+ DVT RY
Sbjct: 335 WTEVYSPSQQ---RWLHCDACEDVCDKPLLYEIGWGK---KLSYIIAFSKDEVVDVTWRY 388
Query: 548 CMKWYRIASKR 558
K + S+R
Sbjct: 389 SCKHDEVMSRR 399
>sp|Q6CAX5|PNG1_YARLI Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PNG1
PE=3 SV=1
Length = 356
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 547
W+EVY +W+H D+ + + + Y+V F+G G DVTRRY
Sbjct: 218 WSEVYSERRK---EWIHTDSCEEAWNSPT---IYSQGWGKKMSYVVGFSGDGVTDVTRRY 271
Query: 548 CMK 550
K
Sbjct: 272 VRK 274
>sp|Q7KRR5|NGLY1_DROME Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Drosophila melanogaster GN=Pngl PE=1 SV=1
Length = 631
Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 547
W EVY + +W+HVD + +ID + K + YI+A++ +DVT RY
Sbjct: 325 WTEVYSEAQ---MRWLHVDPSENVIDSPLMYQ---HGWKRHIDYILAYSRDDIQDVTWRY 378
>sp|Q4R6F3|NGLY1_MACFA Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Macaca fascicularis GN=NGLY1 PE=2 SV=1
Length = 654
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 547
W EVY + +W+H DA + D E L Y++AF+ DVT RY
Sbjct: 338 WTEVYSPSQQ---RWLHCDACEDVCDKPLLYEIGWGK---KLSYVIAFSKDEVVDVTWRY 391
Query: 548 CMKWYRIASKR 558
K + ++R
Sbjct: 392 SCKHEEVIARR 402
>sp|Q96IV0|NGLY1_HUMAN Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Homo
sapiens GN=NGLY1 PE=1 SV=1
Length = 654
Score = 34.7 bits (78), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 547
W EVY + +W+H DA + D E L Y++AF+ DVT RY
Sbjct: 338 WTEVYSPSQQ---RWLHCDACEDVCDKPLLYEIGWGK---KLSYVIAFSKDEVVDVTWRY 391
Query: 548 CMKWYRIASKR 558
K + ++R
Sbjct: 392 SCKHEEVIARR 402
>sp|Q503I8|NGLY1_DANRE Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Danio rerio GN=ngly1 PE=2 SV=1
Length = 644
Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 547
W EVY + +W+H D D E L YI+AF+ DVT RY
Sbjct: 323 WTEVYSQSQR---RWIHCDPCENACDKPLLYEVGWGK---KLSYILAFSKDQVADVTWRY 376
Query: 548 CMKWYRIASKR--VNSAW 563
K + S+R V W
Sbjct: 377 SCKHPEVLSRRTQVQETW 394
>sp|Q30NS7|PYRG_SULDN CTP synthase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
1251) GN=pyrG PE=3 SV=1
Length = 542
Score = 33.5 bits (75), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
Query: 287 TRFVSILDVASLKPEADKNVSSNQDSSRVGGGIFNAPTLMVAKPEEVLASPVK---SFSC 343
T FV + + +K + Q S + I P +++A+ E L K + SC
Sbjct: 168 TFFVHVTLIPFIKAAGELKSKPTQHSVQELRRIGITPQMIIARSENALPKTFKKKLAMSC 227
Query: 344 D-KKENVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEACH 402
D ++V E S Y P S Q+ P+S ELS G L+P+ S + +
Sbjct: 228 DVSSDSVIEALDAAS---IYDVPISFLRQNILKPISKELSLGELNPNMEKWDSLVKKIVQ 284
Query: 403 PKEK 406
P+ +
Sbjct: 285 PQNR 288
>sp|Q5ZJM3|NGLY1_CHICK Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Gallus gallus GN=NGLY1 PE=2 SV=1
Length = 651
Score = 33.1 bits (74), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 488 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRY 547
W EVY + + +W+H D + D E L Y++AF+ DVT RY
Sbjct: 334 WTEVYSASQK---RWLHCDPCENVCDKPLLYEIGWGK---KLSYVIAFSKDEVVDVTWRY 387
Query: 548 CMKWYRIASKRV 559
K + ++R
Sbjct: 388 SCKHQEVLTRRT 399
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 336,608,905
Number of Sequences: 539616
Number of extensions: 14287390
Number of successful extensions: 52257
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 51468
Number of HSP's gapped (non-prelim): 762
length of query: 934
length of database: 191,569,459
effective HSP length: 127
effective length of query: 807
effective length of database: 123,038,227
effective search space: 99291849189
effective search space used: 99291849189
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)