Query 002340
Match_columns 934
No_of_seqs 236 out of 457
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 22:20:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qsf_A RAD4, DNA repair protei 100.0 4E-121 1E-125 1054.4 33.2 467 148-809 7-530 (533)
2 1x3z_A Peptide: N-glycanase; h 99.9 2.1E-26 7.1E-31 250.8 12.5 108 486-606 211-318 (335)
3 2f4m_A Peptide N-glycanase; gl 99.9 4.9E-21 1.7E-25 206.8 16.9 83 486-574 170-254 (295)
4 3isr_A Transglutaminase-like e 95.9 0.0055 1.9E-07 66.5 5.1 83 198-291 121-203 (293)
5 3kd4_A Putative protease; stru 93.9 0.059 2E-06 62.4 6.2 84 200-291 225-309 (506)
6 1ex0_A Coagulation factor XIII 82.8 1.2 4.1E-05 53.7 5.8 36 258-293 299-338 (731)
7 1g0d_A Protein-glutamine gamma 82.1 0.92 3.1E-05 54.4 4.5 37 258-294 256-297 (695)
8 1vjj_A Protein-glutamine gluta 80.8 1.2 4.1E-05 53.5 4.8 37 258-294 256-297 (692)
9 2q3z_A Transglutaminase 2; tra 80.7 1.1 3.7E-05 53.9 4.4 28 266-293 274-301 (687)
10 3isr_A Transglutaminase-like e 50.8 7.2 0.00025 42.2 2.7 23 484-511 213-235 (293)
11 1gh9_A 8.3 kDa protein (gene M 33.4 13 0.00043 32.4 0.9 19 916-934 17-35 (71)
12 1m45_B IQ2, IQ2 motif from MYO 22.0 94 0.0032 21.5 3.4 22 824-845 4-25 (26)
No 1
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_A* 2qsh_A*
Probab=100.00 E-value=4.1e-121 Score=1054.36 Aligned_cols=467 Identities=22% Similarity=0.372 Sum_probs=372.0
Q ss_pred CCCceEEEEecCCc--ccc--ccccccChHHHHHHHHHHHHHHHHHhhhhhHHHhhcCcHHHHHHhhcccccccccccCc
Q 002340 148 DIKGVTIEFDAADS--VTK--KPVRRASAEDKELAELVHKVHLLCLLARGRLIDSVCDDPLIQASLLSLLPSYLLKISEV 223 (934)
Q Consensus 148 ~~~~veIeie~~~~--~kk--k~~RR~t~~eKelr~~vHKvHLLCLLAhg~~rN~~Cnd~~lQa~llSlLP~~~~~~~~~ 223 (934)
+.++|+|||+.... .++ ++.+.+|+.||++|+++||+||||||+|+++||.||||++||++|+|+||.++....++
T Consensus 7 ~~~~l~itl~~~~~~~~~~~~~~kk~~S~~ER~~R~~~Hk~hvl~LL~H~~~RN~W~nD~~lq~~L~sllP~~i~~~l~p 86 (533)
T 2qsf_A 7 GVEDISVEIKPSSKRNSDARRTSRNVCSNEERKRRKYFHMLYLVCLMVHGFIRNEWINSKRLSRKLSNLVPEKVFELLHP 86 (533)
T ss_dssp --------------------CCCTTBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHGGGSCHHHHHHTSC
T ss_pred CCCCeEEEecCCccccchhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhCCHHHHHhhCc
Confidence 56779999987632 221 12234899999999999999999999999999999999999999999999998654432
Q ss_pred cc----------cccccchhhHHhhhcceeecccC---ccccc----------------h--hhHHHHHHHHhcCCHHHH
Q 002340 224 SK----------LTANALSPIVSWFHDNFHVRSSV---STRRS----------------F--HSDLAHALESREGTPEEI 272 (934)
Q Consensus 224 ~~----------~~~~~L~~lv~WF~~~F~v~~~~---~~~~~----------------~--~~~L~~~l~~~~Gs~de~ 272 (934)
.. ...++|+.|+.||+.+|.|+++. +.... + ..+|..++++++|++|++
T Consensus 87 ~~~~~~~~~~~~~~~~~Lk~L~~ww~~~F~it~p~~~~g~~~~~w~e~~~~~~~~~~f~~~~~~~f~~~~~~~~Gs~d~~ 166 (533)
T 2qsf_A 87 QKDEELPLRSTRKLLDGLKKCMELWQKHWKITKKYDNEGLYMRTWKEIEMSANNKRKFKTLKRSDFLRAVSKGHGDPDIS 166 (533)
T ss_dssp CCCSSCTHHHHHHHHHHHHHHHHHHHHHCCEECCCSSCTTSCCCHHHHHHTTTTCCCEECCCHHHHHHHHHHTEECHHHH
T ss_pred CCCccccccchHHHHHHHHHHHHHHHhhEEEcCCccCCCccccCccccchhhccccccccccHHHHHHHHHhcCCChhHH
Confidence 11 12478999999999999998752 11100 1 246889999999999999
Q ss_pred HHHHHHHHHhcCCceEEEEeeccccCCcccccccCCCCCCCCcCCCccCCCcccccCccccccCCCcccccCcccccccc
Q 002340 273 AALSVALFRALKLTTRFVSILDVASLKPEADKNVSSNQDSSRVGGGIFNAPTLMVAKPEEVLASPVKSFSCDKKENVCET 352 (934)
Q Consensus 273 aqLF~aLLRaLgl~aRLV~sLqp~sLKp~~~k~~~~~~~~s~~~~g~~~~~~p~~~k~~~~~~~~~~~~~~~~~~~~~~~ 352 (934)
||||||||||||+.||||+||||+++.... + ..++
T Consensus 167 AqlF~aLlRalG~~aRlV~SLqP~~f~~~k----------------------~--------~~~~--------------- 201 (533)
T 2qsf_A 167 VQGFVAMLRACNVNARLIMSCQPPDFTNMK----------------------I--------DTSL--------------- 201 (533)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECCCCTTCCB----------------------S--------CCCC---------------
T ss_pred HHHHHHHHHHCCCceEEEeccccccccccc----------------------c--------ccCc---------------
Confidence 999999999999999999999988654310 0 0000
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCccccccCCCCCCCCccccCCccccCCCccchhhhccCCChhHHHHHHHHhhccccc
Q 002340 353 SSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEACHPKEKSQALKRKGDLEFEMQLEMALSATNVA 432 (934)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~s~~~~~s~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~rr~g~~~~~~q~~~a~~a~~~~ 432 (934)
+ + ....
T Consensus 202 --------------------------------------------------~-------k--~~~~--------------- 207 (533)
T 2qsf_A 202 --------------------------------------------------N-------G--NNAY--------------- 207 (533)
T ss_dssp --------------------------------------------------C------------CH---------------
T ss_pred --------------------------------------------------c-------c--CCcc---------------
Confidence 0 0 0000
Q ss_pred cccccccccccccCCCCCcccccccccccccCCCCCccCCcccccCCccCCCCceeEEEEeccCCCCCceEEeccccc-c
Q 002340 433 TSKSNICSDVKDLNSNSSTVLPVKRLKKIESGESSTSCLGISTAVGSRKVGAPLYWAEVYCSGENLTGKWVHVDAANA-I 511 (934)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~~~s~~~~~~~s~~~~~~~l~~P~fWvEV~~~~e~~~~kWI~VDPv~~-~ 511 (934)
..++.+|+||+|||++. +++||||||+++ +
T Consensus 208 ----------------------------------------------~~~~~~P~~W~EV~s~~---~~rWi~VDp~~~~~ 238 (533)
T 2qsf_A 208 ----------------------------------------------KDMVKYPIFWCEVWDKF---SKKWITVDPVNLKT 238 (533)
T ss_dssp ----------------------------------------------HHHTTSCSEEEEEEETT---TTEEEEEESSSSCE
T ss_pred ----------------------------------------------ccccCCCeEEEEEEEcC---CCeEEEEecccccc
Confidence 01224899999999975 599999999975 4
Q ss_pred c---ccchhhhHhH--HhccCCeeEEEEEcCCC-cccchhhhhhhHHH-hhcccCC-----HHHHHHHHhhhhhcccCcC
Q 002340 512 I---DGEQKVEAAA--AACKTSLRYIVAFAGCG-AKDVTRRYCMKWYR-IASKRVN-----SAWWDAVLAPLRELESGAT 579 (934)
Q Consensus 512 v---d~p~~~Ep~~--~~~~~~msYVVAfd~DG-akDVTrRYa~~w~k-~~rkRv~-----~~Ww~~~L~~~~~~~s~~~ 579 (934)
+ +.+..|||.. .++.++|+|||||++|| |+|||+||+.+|.. +++.|+. ++||..+|+.|++
T Consensus 239 id~~~~~~~~Ep~~~~~~~~~~m~YViAf~~d~~~kDVT~RY~~~~~~k~rr~Ri~~~~~~~~W~~~~L~~~~~------ 312 (533)
T 2qsf_A 239 IEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTRRYAQWMNSKVRKRRITKDDFGEKWFRKVITALHH------ 312 (533)
T ss_dssp EECCSSCCTTSCCSTTTTSSCCCCEEEEECTTCCEEECHHHHCTTCCCCCGGGSGGGSHHHHHHHHHHHHHHCC------
T ss_pred ccccccccccccccccccccCceeEEEEEcCCCceEecchhhhhchhhhhheeeecCCcchHHHHHHHHHHHhc------
Confidence 4 4577899843 25789999999999987 99999999998874 4556764 7899999999974
Q ss_pred CCccccccccCcccccCCchHHHHHHHHHccCCCCcChhhhccCCceeeccccccccccCCCCCcceeecc-------ee
Q 002340 580 GDLNVESSAKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKGPILGFCSG-------HA 652 (934)
Q Consensus 580 ~~~~i~~~~~~~~~~~rd~~Ed~EL~~~~~~epmPtsi~~fKnHP~YvLerhL~k~EvI~P~a~v~G~~~G-------Ep 652 (934)
+....+|..||+||+.+.++||||+|+++|||||+|||||||++||+|||+++++|+|+| ||
T Consensus 313 -----------~~~~~~d~~Ed~el~~~~~~e~~P~s~~~fK~HP~yvLer~L~k~E~i~P~a~~~g~~~~~~k~~~~E~ 381 (533)
T 2qsf_A 313 -----------RKRTKIDDYEDQYFFQRDESEGIPDSVQDLKNHPYYVLEQDIKQTQIVKPGCKECGYLKVHGKVGKVLK 381 (533)
T ss_dssp -----------SCCCHHHHHHHHHHHHHHHHSCCCSSTGGGTTCSSEEEGGGSCTTEEECTTCCCSEEEECCSTTCCEEE
T ss_pred -----------CCccccchhHHHHHHHHHhcCCCCccHHHHcCCcHhhhhhhhccceeeCCCCceeeEEecCcCCCcccc
Confidence 234567889999999999999999999999999999999999999999999999999987 99
Q ss_pred eeecCCccccccHHHHHHhcccccCCCcccceeccCCCCCCCCCCCCCCccccccccccccccccccccCCCCCC-CCCC
Q 002340 653 VYPRSCVQTLKTKERWLREALQVKANEVPVKVIKNSSKSKKGQDFEPEDYDEVDARGNIELYGKWQLEPLRLPSA-VNGI 731 (934)
Q Consensus 653 VY~RsdV~~LkS~e~W~r~GR~VK~gE~P~K~vk~~~~~~k~~~~~~~~~~~~~~~~~~~LY~~wQTe~y~PPpv-vdG~ 731 (934)
||+|+||++|||+++|+++||+||+||+|+|+|+.++.+.. .+++ ..+++|||+||||+|+|||+ +||+
T Consensus 382 VY~R~~V~~l~S~e~W~~~gR~vk~ge~P~K~v~~r~~~~~----~~~~------~~~~~Ly~~~QTe~y~Pp~~~~dG~ 451 (533)
T 2qsf_A 382 VYAKRDIADLKSARQWYMNGRILKTGSRCKKVIKRTVGRPK----GEAE------EEDERLYSFEDTELYIPPLASASGE 451 (533)
T ss_dssp EEEGGGEEECBCHHHHHTTTEEECSSCCCSEEECC----------------------CEEEBCGGGEEECCCCCCCTTCC
T ss_pred eeehhhhheeecHHHHHHcCCccCCCCeeeeEEecccCCcc----cccc------cccccccCHHhCccccCCCCccCCc
Confidence 99999999999999999999999999999999998754321 1111 25689999999999999999 9999
Q ss_pred ccCCCCCceEeecCCCCCCCeeeecCccHHHHHHHcCCCeeeceeceeecCC-eeeeeEceEEEccccHHHHHHHHHHH
Q 002340 732 VPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNG-RSTPVFDGIVVCAEFKDTILEAYAEE 809 (934)
Q Consensus 732 VPkN~yGNVdlf~psMlP~G~VHL~l~~i~rvAkkLgIDyApAVtGFeFk~G-~a~PvidGIVV~eE~~e~l~~a~~e~ 809 (934)
||||+|||||||+|+|||+|||||++++++++|++||||||+|||||+|++| +++|||+|||||+||+++|++||++.
T Consensus 452 VPkN~yGNvd~~~p~m~P~G~vhi~~~~~~~~ar~L~Idya~Av~GFef~~g~~~~Pv~~GiVV~~e~~~~l~~a~~~~ 530 (533)
T 2qsf_A 452 ITKNTFGNIEVFAPTMIPGNCCLVENPVAIKAARFLGVEFAPAVTSFKFERGSTVKPVLSGIVVAKWLREAIETAIDGI 530 (533)
T ss_dssp CCCCTTSCEECSSGGGSCTTEEEEECTTHHHHHHHTTCCCEEEEEEECC------CEEEEEEEEETTSHHHHHHHHHTG
T ss_pred ccccCCCCEEeccCCCCCCCcEEecCccHHHHHHHhCCCeeeeeeceeeCCCCcceEEeCeEEEehHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999975 57999999999999999999999754
No 2
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=99.93 E-value=2.1e-26 Score=250.83 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=87.4
Q ss_pred ceeEEEEeccCCCCCceEEecccccccccchhhhHhHHhccCCeeEEEEEcCCCcccchhhhhhhHHHhhcccCCHHHHH
Q 002340 486 LYWAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRYCMKWYRIASKRVNSAWWD 565 (934)
Q Consensus 486 ~fWvEV~~~~e~~~~kWI~VDPv~~~vd~p~~~Ep~~~~~~~~msYVVAfd~DGakDVTrRYa~~w~k~~rkRv~~~Ww~ 565 (934)
|+|+|||+++. ++||||||+++++++|..||.+ |+++|+|||||+.|||+|||+||+.+ ..++|.|+++.||.
T Consensus 211 H~W~EV~~~~~---~rWv~vDp~~~~id~P~~ye~g---w~k~msYVIAFs~dgv~DVT~RY~~~-~~lrR~rv~e~wl~ 283 (335)
T 1x3z_A 211 HVWCEYFSNFL---NRWVHVDSCEQSFDQPYIYSIN---WNKKMSYCIAFGKDGVVDVSKRYILQ-NELPRDQIKEEDLK 283 (335)
T ss_dssp EEEEEEEETTT---TEEEEEETTTTEESCTHHHHTT---SCCCBCCEEEEETTEEEECHHHHCSS-SBCCCCSSCHHHHH
T ss_pred cEEEEEEECCC---CCEEEECCCCCccCCCceeecC---CCCceEEEEEEcCCCCEECHHHhCcC-CccccccCCHHHHH
Confidence 59999999753 7999999999999999999865 78999999999999999999999999 66677899999999
Q ss_pred HHHhhhhhcccCcCCCccccccccCcccccCCchHHHHHHH
Q 002340 566 AVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELET 606 (934)
Q Consensus 566 ~~L~~~~~~~s~~~~~~~i~~~~~~~~~~~rd~~Ed~EL~~ 606 (934)
.+|.+|+..... +. +...+.....||..|+.||..
T Consensus 284 ~~L~~l~~~~r~--~~----s~~e~~~L~~Rd~~E~~EL~~ 318 (335)
T 1x3z_A 284 FLCQFITKRLRY--SL----NDDEIYQLACRDEQEQIELIR 318 (335)
T ss_dssp HHHHHHHHHHHT--TS----CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--cC----CHHHHHHHHHhHHHHHHHhhc
Confidence 999999753211 00 001123456788888888873
No 3
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=99.85 E-value=4.9e-21 Score=206.79 Aligned_cols=83 Identities=28% Similarity=0.477 Sum_probs=73.9
Q ss_pred ceeEEEEeccCCCCCceEEecccccccccchhhhHhHHhccCCeeEEEEEcCCCcccchhhhhhhHHHh--hcccCCHHH
Q 002340 486 LYWAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRYCMKWYRI--ASKRVNSAW 563 (934)
Q Consensus 486 ~fWvEV~~~~e~~~~kWI~VDPv~~~vd~p~~~Ep~~~~~~~~msYVVAfd~DGakDVTrRYa~~w~k~--~rkRv~~~W 563 (934)
|.|+|||+++. ++||+|||+.++++.|..++.. |.+.|+|||||+.|||+|||.||+.+|..+ +|.|+++.|
T Consensus 170 HaW~Evy~~g~---~gWv~~Dpt~~~~~~p~~~e~g---wgr~lsYViAf~~D~a~DVT~RY~~~~~~~~~rR~~v~e~w 243 (295)
T 2f4m_A 170 HVWTEVYSPSQ---QRWLHCDACEDVCDKPLLYEIG---WGKKLSYIIAFSKDEVVDVTWRYSCKHDEVMSRRTKVKEEL 243 (295)
T ss_dssp EEEEEEEETTT---TEEEEEETTTTEESCGGGTTTT---SCCCCCCEEEECSSCEEECGGGGCSCHHHHHHHCCSSCHHH
T ss_pred EEEEEEEECCC---CeEEEEeCCcCccCCCceEeec---cCCCceEEEEECCccCccchhhcccchHHHHhhccCCCHHH
Confidence 59999999753 6999999999999999988754 789999999999999999999999999876 456789999
Q ss_pred HHHHHhhhhhc
Q 002340 564 WDAVLAPLREL 574 (934)
Q Consensus 564 w~~~L~~~~~~ 574 (934)
|..+|..|+..
T Consensus 244 l~~~l~~l~~~ 254 (295)
T 2f4m_A 244 LRETINGLNKQ 254 (295)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999753
No 4
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}
Probab=95.93 E-value=0.0055 Score=66.51 Aligned_cols=83 Identities=19% Similarity=0.342 Sum_probs=59.6
Q ss_pred hhcCcHHHHHHhhcccccccccccCccccccccchhhHHhhhcceeecccCccccchhhHHHHHHHHhcCCHHHHHHHHH
Q 002340 198 SVCDDPLIQASLLSLLPSYLLKISEVSKLTANALSPIVSWFHDNFHVRSSVSTRRSFHSDLAHALESREGTPEEIAALSV 277 (934)
Q Consensus 198 ~~Cnd~~lQa~llSlLP~~~~~~~~~~~~~~~~L~~lv~WF~~~F~v~~~~~~~~~~~~~L~~~l~~~~Gs~de~aqLF~ 277 (934)
..|..+.|++++.+++... .-....+..|..|++++|+-....... ......+|+.+.|.=...|+||+
T Consensus 121 ~~~~~d~i~~~A~~~~~~~--------~~~~~~~~ai~~~v~~~~~Y~~~~~~~---~~~a~~~l~~~~G~C~d~A~l~v 189 (293)
T 3isr_A 121 RYCQSDKLQKLAYKEFGKI--------ENVYSKVLAITDWIYNNVEYISGSTNS---QTSAFDTITERAGVCRDFAHLGI 189 (293)
T ss_dssp TTBCGGGSHHHHHHHHTTC--------CSHHHHHHHHHHHHHHHSEECTTSCCT---TCCHHHHHHHCEECHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhccC--------CCHHHHHHHHHHHHHhhcEEeccCCCC---CCCHHHhhcCCcEehHHHHHHHH
Confidence 4566667888877765421 111355678999999998865432111 11234688899999999999999
Q ss_pred HHHHhcCCceEEEE
Q 002340 278 ALFRALKLTTRFVS 291 (934)
Q Consensus 278 aLLRaLgl~aRLV~ 291 (934)
+|||++||+||+|.
T Consensus 190 al~Ra~GIPAR~Vs 203 (293)
T 3isr_A 190 ALCRALSIPARYFT 203 (293)
T ss_dssp HHHHHTTCCEEEEE
T ss_pred HHHHHCCCCEEEEE
Confidence 99999999999994
No 5
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=93.85 E-value=0.059 Score=62.44 Aligned_cols=84 Identities=17% Similarity=0.124 Sum_probs=60.4
Q ss_pred cCcHHHHHHhhcccccccccccCccccccccchhhHHhhhcceeecccCccccch-hhHHHHHHHHhcCCHHHHHHHHHH
Q 002340 200 CDDPLIQASLLSLLPSYLLKISEVSKLTANALSPIVSWFHDNFHVRSSVSTRRSF-HSDLAHALESREGTPEEIAALSVA 278 (934)
Q Consensus 200 Cnd~~lQa~llSlLP~~~~~~~~~~~~~~~~L~~lv~WF~~~F~v~~~~~~~~~~-~~~L~~~l~~~~Gs~de~aqLF~a 278 (934)
..++.+++++..|.-... -....+..+..|.+++++-..-.....++ ......+|+.+.|+=-..++||+|
T Consensus 225 ~~~~~i~~~a~~l~~~~~--------~~~ek~~~iy~~V~~~i~y~~~~~~~~g~~~~~a~~vl~~~~G~C~d~a~Ll~A 296 (506)
T 3kd4_A 225 SQGYESKTFAQFLTDKSG--------NEQEKVNIIRDHILNNLSTCPIPMAMTGYTVRDIDTVLRSAYGTPLEIAQLLNV 296 (506)
T ss_dssp SCCHHHHHHHHHHHSSCS--------SHHHHHHHHHHHHHHHCEECCCCGGGGTTCCCCHHHHHHHTEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHhccEecceecccCCCCCCCHHHHHHhCCcchHHHHHHHHH
Confidence 678999999988874311 11234556888999888755321111111 124568999999999999999999
Q ss_pred HHHhcCCceEEEE
Q 002340 279 LFRALKLTTRFVS 291 (934)
Q Consensus 279 LLRaLgl~aRLV~ 291 (934)
|||++||+||+|+
T Consensus 297 llRa~GIpA~~v~ 309 (506)
T 3kd4_A 297 MLNAAGIPSEVLA 309 (506)
T ss_dssp HHHHTTCCEEEEE
T ss_pred HHHHCCCCcEEEE
Confidence 9999999999996
No 6
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=82.76 E-value=1.2 Score=53.73 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=29.4
Q ss_pred HHHHHHHhc----CCHHHHHHHHHHHHHhcCCceEEEEee
Q 002340 258 LAHALESRE----GTPEEIAALSVALFRALKLTTRFVSIL 293 (934)
Q Consensus 258 L~~~l~~~~----Gs~de~aqLF~aLLRaLgl~aRLV~sL 293 (934)
|..-+.+++ |-=...|++||+|||+||++||+|...
T Consensus 299 l~~~~~~~~PV~~G~C~~fA~v~~~~lR~lGIPaRvVtgy 338 (731)
T 1ex0_A 299 LLEYRSSENPVRYGQCWVFAGVFNTFLRCLGIPARIVTNY 338 (731)
T ss_dssp HHHHHHHTSCEEEECHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHhcCCccceeeehhHHHHHHHHHHhCCCCeeEEccc
Confidence 444455556 888999999999999999999999643
No 7
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=82.12 E-value=0.92 Score=54.43 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=29.4
Q ss_pred HHHHHHHh-----cCCHHHHHHHHHHHHHhcCCceEEEEeec
Q 002340 258 LAHALESR-----EGTPEEIAALSVALFRALKLTTRFVSILD 294 (934)
Q Consensus 258 L~~~l~~~-----~Gs~de~aqLF~aLLRaLgl~aRLV~sLq 294 (934)
|..-++++ .|-=...|++||+|||+||++||+|..++
T Consensus 256 l~~~~~~~~~PV~~G~C~~fA~v~~t~lR~lGIPaR~Vtgy~ 297 (695)
T 1g0d_A 256 LQQWSKAGVRPVKYGQCWVFAAVACTVLRCLGIPTRPITNFA 297 (695)
T ss_dssp HHHHHHTTSCCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHHHcCCCcccceeeHHHHHHHHHHHHhCCCCeeEEcccc
Confidence 44445555 38888999999999999999999996443
No 8
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=80.78 E-value=1.2 Score=53.52 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=29.1
Q ss_pred HHHHHHHh-----cCCHHHHHHHHHHHHHhcCCceEEEEeec
Q 002340 258 LAHALESR-----EGTPEEIAALSVALFRALKLTTRFVSILD 294 (934)
Q Consensus 258 L~~~l~~~-----~Gs~de~aqLF~aLLRaLgl~aRLV~sLq 294 (934)
|..-++++ .|-=...|+++|+|||+||++||+|..++
T Consensus 256 l~~~~~~~~~PV~~G~C~~fA~~~~~~lR~lGIPaR~Vtgy~ 297 (692)
T 1vjj_A 256 LKNWKKSGLSPVRYGQCWVFAGTLNTALRSLGIPSRVITNFN 297 (692)
T ss_dssp HHHHHHTTSCCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHHHcCCCcccceeeHHHHHHHHHHHHhCCCCeeEEcccc
Confidence 44445443 37778999999999999999999997443
No 9
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=80.68 E-value=1.1 Score=53.91 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHHhcCCceEEEEee
Q 002340 266 EGTPEEIAALSVALFRALKLTTRFVSIL 293 (934)
Q Consensus 266 ~Gs~de~aqLF~aLLRaLgl~aRLV~sL 293 (934)
.|.=...|++||+|||+|||+||+|...
T Consensus 274 ~G~C~dfA~~~~~llRalGIPAR~VsGy 301 (687)
T 2q3z_A 274 YGQCWVFAAVACTVLRCLGIPTRVVTNY 301 (687)
T ss_dssp EECHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred eeehHHHHHHHHHHHHhCCCCcEEEeec
Confidence 5888899999999999999999999633
No 10
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}
Probab=50.84 E-value=7.2 Score=42.15 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=19.3
Q ss_pred CCceeEEEEeccCCCCCceEEecccccc
Q 002340 484 APLYWAEVYCSGENLTGKWVHVDAANAI 511 (934)
Q Consensus 484 ~P~fWvEV~~~~e~~~~kWI~VDPv~~~ 511 (934)
..|-|+|||.. +.||.+||..+.
T Consensus 213 ~~HAW~Evyl~-----ggWv~~DpT~~~ 235 (293)
T 3isr_A 213 DFHACFEAYIG-----GNWIIFDATRLV 235 (293)
T ss_dssp CEEEEEEEEET-----TEEEEECTTCCS
T ss_pred CeEEEEEEEEC-----CcEEEEECCCCC
Confidence 46899999985 589999998753
No 11
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=33.36 E-value=13 Score=32.41 Aligned_cols=19 Identities=32% Similarity=0.793 Sum_probs=16.2
Q ss_pred cceeecccCCCceEEEeeC
Q 002340 916 NSVTTKRCHCGFTIQVEEL 934 (934)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~ 934 (934)
....|+.|+||-.|+|+.+
T Consensus 17 ~~~kT~~C~CG~~~~~~k~ 35 (71)
T 1gh9_A 17 EGAKTRKCVCGRTVNVKDR 35 (71)
T ss_dssp TTCSEEEETTTEEEECCSS
T ss_pred CCCcEEECCCCCeeeeceE
Confidence 3678999999999999764
No 12
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=22.04 E-value=94 Score=21.51 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 002340 824 QATSRWYQLLSSIVTRQRLNNC 845 (934)
Q Consensus 824 ~aL~~Wk~Llk~LrIreRL~~~ 845 (934)
+|++.-..-++|..||+|++++
T Consensus 4 qaikylqnnikgfiirqrvnde 25 (26)
T 1m45_B 4 QAIKYLQNNIKGFIIRQRVNDE 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccceEEEeeecccC
Confidence 4556666778999999999875
Done!