Query 002345
Match_columns 933
No_of_seqs 441 out of 3580
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 21:57:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1045 Uncharacterized conser 100.0 3.1E-39 6.8E-44 353.4 4.0 366 281-714 6-397 (404)
2 COG2227 UbiG 2-polyprenyl-3-me 99.7 4.6E-18 1E-22 179.0 10.6 161 679-865 41-205 (243)
3 PLN02396 hexaprenyldihydroxybe 99.7 2.9E-16 6.3E-21 172.9 18.7 162 694-883 131-294 (322)
4 KOG1270 Methyltransferases [Co 99.6 1.6E-15 3.5E-20 161.3 9.8 167 677-865 61-239 (282)
5 COG2226 UbiE Methylase involve 99.6 7.6E-15 1.7E-19 155.7 14.7 119 678-811 35-154 (238)
6 PF13489 Methyltransf_23: Meth 99.6 1.7E-14 3.7E-19 138.4 13.0 135 692-874 20-158 (161)
7 PF01209 Ubie_methyltran: ubiE 99.6 7.8E-15 1.7E-19 154.9 11.5 113 685-811 38-151 (233)
8 PRK11036 putative S-adenosyl-L 99.6 7.3E-14 1.6E-18 147.6 18.6 171 685-880 36-209 (255)
9 PLN02233 ubiquinone biosynthes 99.6 7.7E-14 1.7E-18 149.0 17.1 120 686-816 65-185 (261)
10 PLN02244 tocopherol O-methyltr 99.5 7.5E-14 1.6E-18 154.3 15.0 108 693-815 117-225 (340)
11 PF12847 Methyltransf_18: Meth 99.5 1.2E-13 2.7E-18 126.2 13.3 106 694-814 1-112 (112)
12 PF08241 Methyltransf_11: Meth 99.5 6.3E-14 1.4E-18 122.6 10.8 94 699-811 1-95 (95)
13 TIGR02021 BchM-ChlM magnesium 99.5 6.3E-13 1.4E-17 137.1 19.0 157 686-876 45-203 (219)
14 PTZ00098 phosphoethanolamine N 99.5 2.4E-13 5.2E-18 145.4 16.1 133 667-815 25-158 (263)
15 KOG1045 Uncharacterized conser 99.5 7.2E-15 1.6E-19 162.8 3.6 241 667-923 20-267 (404)
16 PRK14103 trans-aconitate 2-met 99.5 3.9E-13 8.4E-18 142.0 16.0 107 686-815 21-128 (255)
17 PRK10258 biotin biosynthesis p 99.5 6.4E-13 1.4E-17 139.5 17.3 118 678-817 26-144 (251)
18 PRK11207 tellurite resistance 99.5 3.1E-13 6.7E-18 138.4 13.9 113 686-814 22-136 (197)
19 PF13847 Methyltransf_31: Meth 99.5 2.5E-13 5.3E-18 132.4 11.9 106 694-815 3-112 (152)
20 PLN02585 magnesium protoporphy 99.5 1.7E-12 3.7E-17 142.9 19.8 169 680-879 127-299 (315)
21 TIGR02752 MenG_heptapren 2-hep 99.5 9.7E-13 2.1E-17 135.9 15.9 117 684-814 35-152 (231)
22 PRK15068 tRNA mo(5)U34 methylt 99.5 8.4E-13 1.8E-17 145.4 16.1 116 683-814 111-227 (322)
23 TIGR00477 tehB tellurite resis 99.4 2.3E-12 4.9E-17 131.9 16.1 110 685-811 21-131 (195)
24 PF02353 CMAS: Mycolic acid cy 99.4 1.1E-12 2.3E-17 141.8 13.5 119 679-813 47-166 (273)
25 PF13649 Methyltransf_25: Meth 99.4 2.7E-13 5.9E-18 123.6 7.2 97 698-807 1-100 (101)
26 PRK06202 hypothetical protein; 99.4 3.6E-12 7.9E-17 132.7 16.4 108 693-817 59-170 (232)
27 PRK12335 tellurite resistance 99.4 3.7E-12 8E-17 137.5 16.1 105 693-814 119-224 (287)
28 TIGR01983 UbiG ubiquinone bios 99.4 1.2E-11 2.5E-16 126.9 18.9 175 678-881 25-206 (224)
29 PRK15451 tRNA cmo(5)U34 methyl 99.4 2.9E-12 6.3E-17 135.4 14.8 128 674-814 34-165 (247)
30 TIGR00740 methyltransferase, p 99.4 3.7E-12 8.1E-17 133.2 15.2 126 677-815 34-163 (239)
31 TIGR02081 metW methionine bios 99.4 1E-11 2.2E-16 126.3 17.5 157 684-875 5-163 (194)
32 TIGR00452 methyltransferase, p 99.4 3.6E-12 7.7E-17 140.4 15.3 116 684-815 111-227 (314)
33 PF07021 MetW: Methionine bios 99.4 3.6E-12 7.7E-17 131.4 14.0 152 684-875 5-163 (193)
34 PRK07580 Mg-protoporphyrin IX 99.4 1.8E-11 3.8E-16 125.9 18.8 115 683-814 49-166 (230)
35 COG2230 Cfa Cyclopropane fatty 99.4 2.9E-12 6.3E-17 138.9 13.3 113 679-807 57-169 (283)
36 PRK08317 hypothetical protein; 99.4 7.3E-12 1.6E-16 127.4 15.2 122 679-815 4-126 (241)
37 PRK01683 trans-aconitate 2-met 99.4 3.1E-12 6.8E-17 134.6 12.8 111 685-816 22-133 (258)
38 PF05401 NodS: Nodulation prot 99.4 3.8E-12 8.3E-17 131.6 13.0 125 672-814 19-147 (201)
39 PRK05785 hypothetical protein; 99.4 4.2E-12 9.2E-17 133.2 13.0 99 694-816 51-151 (226)
40 PLN02336 phosphoethanolamine N 99.3 9.4E-12 2E-16 142.4 15.5 115 684-815 256-371 (475)
41 PRK05134 bifunctional 3-demeth 99.3 4E-11 8.7E-16 124.3 18.4 174 677-880 31-207 (233)
42 TIGR03587 Pse_Me-ase pseudamin 99.3 1.2E-11 2.6E-16 128.1 13.5 113 682-814 30-143 (204)
43 TIGR02072 BioC biotin biosynth 99.3 1.5E-11 3.3E-16 125.5 14.1 106 694-818 34-140 (240)
44 PRK11873 arsM arsenite S-adeno 99.3 1.9E-11 4.2E-16 130.0 13.3 109 692-814 75-184 (272)
45 smart00828 PKS_MT Methyltransf 99.3 4.5E-11 9.7E-16 123.1 14.6 105 696-815 1-106 (224)
46 PF08242 Methyltransf_12: Meth 99.3 8.1E-13 1.8E-17 119.4 1.5 96 699-809 1-98 (99)
47 TIGR03840 TMPT_Se_Te thiopurin 99.3 2.6E-11 5.7E-16 126.6 12.9 119 694-815 34-154 (213)
48 PF03848 TehB: Tellurite resis 99.3 3.8E-11 8.3E-16 124.1 13.5 111 686-813 22-133 (192)
49 TIGR02469 CbiT precorrin-6Y C5 99.3 6.7E-11 1.5E-15 109.1 13.5 113 683-813 8-122 (124)
50 PRK11705 cyclopropane fatty ac 99.3 4.4E-11 9.5E-16 134.9 14.8 115 680-814 153-268 (383)
51 smart00138 MeTrc Methyltransfe 99.3 4.7E-11 1E-15 128.2 13.9 116 694-812 99-241 (264)
52 PLN02490 MPBQ/MSBQ methyltrans 99.2 1.5E-10 3.2E-15 129.0 16.5 112 685-814 103-216 (340)
53 PRK13944 protein-L-isoaspartat 99.2 1.4E-10 3.1E-15 119.6 14.7 112 683-814 61-174 (205)
54 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 5.6E-10 1.2E-14 113.3 18.3 115 684-814 29-144 (223)
55 PRK11088 rrmA 23S rRNA methylt 99.2 5.9E-11 1.3E-15 127.1 11.6 116 676-818 68-186 (272)
56 TIGR00080 pimt protein-L-isoas 99.2 1.6E-10 3.5E-15 119.6 14.3 113 682-814 65-178 (215)
57 PLN02336 phosphoethanolamine N 99.2 7.2E-11 1.6E-15 135.2 12.8 112 684-812 27-141 (475)
58 PRK00121 trmB tRNA (guanine-N( 99.2 7.2E-11 1.6E-15 121.6 11.1 113 694-819 40-162 (202)
59 PRK13942 protein-L-isoaspartat 99.2 1.9E-10 4.1E-15 119.5 14.2 112 682-813 64-176 (212)
60 PRK13255 thiopurine S-methyltr 99.2 2.3E-10 4.9E-15 120.1 14.5 117 693-814 36-156 (218)
61 TIGR00138 gidB 16S rRNA methyl 99.2 1.8E-10 3.8E-15 117.4 13.0 103 692-814 40-143 (181)
62 PRK00216 ubiE ubiquinone/menaq 99.2 3.1E-10 6.8E-15 116.3 14.8 115 686-813 43-158 (239)
63 KOG1540 Ubiquinone biosynthesi 99.2 3E-10 6.5E-15 121.2 14.9 123 678-811 84-212 (296)
64 PF08003 Methyltransf_9: Prote 99.1 3.3E-10 7.1E-15 123.9 13.2 164 683-880 104-269 (315)
65 COG4106 Tam Trans-aconitate me 99.1 8.5E-11 1.8E-15 122.9 7.9 110 686-816 22-132 (257)
66 PRK00107 gidB 16S rRNA methylt 99.1 4.2E-10 9.1E-15 115.7 12.7 99 694-812 45-144 (187)
67 PRK08287 cobalt-precorrin-6Y C 99.1 8.1E-10 1.7E-14 111.7 13.7 111 683-813 20-131 (187)
68 PRK06922 hypothetical protein; 99.1 6.1E-10 1.3E-14 132.0 13.7 108 693-814 417-538 (677)
69 TIGR00537 hemK_rel_arch HemK-r 99.1 1.3E-09 2.9E-14 109.4 14.1 112 686-815 11-142 (179)
70 PF05175 MTS: Methyltransferas 99.1 2.4E-09 5.2E-14 107.4 15.6 124 674-811 11-138 (170)
71 PRK00312 pcm protein-L-isoaspa 99.1 1.2E-09 2.7E-14 112.4 13.8 108 684-814 68-176 (212)
72 TIGR00091 tRNA (guanine-N(7)-) 99.1 5.9E-10 1.3E-14 114.0 10.4 114 694-820 16-139 (194)
73 TIGR02716 C20_methyl_CrtF C-20 99.0 2.2E-09 4.8E-14 116.6 14.6 115 684-813 139-254 (306)
74 KOG1271 Methyltransferases [Ge 99.0 8.8E-10 1.9E-14 112.9 10.6 136 674-822 43-190 (227)
75 TIGR00536 hemK_fam HemK family 99.0 3.5E-09 7.5E-14 114.6 15.5 166 622-816 56-247 (284)
76 PF13659 Methyltransf_26: Meth 99.0 8.1E-10 1.8E-14 102.0 8.6 108 695-815 1-117 (117)
77 PLN03075 nicotianamine synthas 99.0 3.3E-09 7.1E-14 116.3 14.5 108 694-813 123-233 (296)
78 TIGR03533 L3_gln_methyl protei 99.0 7.7E-09 1.7E-13 112.3 16.8 125 677-815 103-253 (284)
79 TIGR03438 probable methyltrans 99.0 3.8E-09 8.2E-14 115.3 14.3 109 694-813 63-177 (301)
80 TIGR03534 RF_mod_PrmC protein- 99.0 8.1E-09 1.8E-13 107.5 14.5 122 677-813 71-217 (251)
81 PRK13256 thiopurine S-methyltr 99.0 8.3E-09 1.8E-13 109.4 14.3 118 693-813 42-163 (226)
82 KOG4300 Predicted methyltransf 99.0 5E-09 1.1E-13 109.2 12.0 120 690-825 72-198 (252)
83 TIGR01177 conserved hypothetic 99.0 6.2E-09 1.3E-13 114.8 13.5 117 685-816 173-297 (329)
84 PRK07402 precorrin-6B methylas 99.0 9.1E-09 2E-13 104.9 13.8 119 679-816 25-145 (196)
85 PRK14968 putative methyltransf 98.9 2E-08 4.4E-13 99.7 15.0 116 686-815 15-150 (188)
86 PRK14967 putative methyltransf 98.9 1.9E-08 4.2E-13 104.8 15.4 117 691-823 33-170 (223)
87 PRK00377 cbiT cobalt-precorrin 98.9 1E-08 2.2E-13 105.0 13.1 112 687-815 33-147 (198)
88 cd02440 AdoMet_MTases S-adenos 98.9 1.4E-08 3.1E-13 87.2 12.0 101 697-812 1-103 (107)
89 KOG2899 Predicted methyltransf 98.9 1.7E-08 3.7E-13 107.3 14.8 194 693-907 57-285 (288)
90 PRK11805 N5-glutamine S-adenos 98.9 1.6E-08 3.5E-13 111.1 15.3 165 623-815 75-265 (307)
91 PRK15001 SAM-dependent 23S rib 98.9 1.8E-08 3.8E-13 114.0 15.8 118 684-812 218-339 (378)
92 PF01135 PCMT: Protein-L-isoas 98.9 4.4E-09 9.5E-14 110.1 10.1 114 682-815 60-174 (209)
93 KOG1541 Predicted protein carb 98.9 6.8E-09 1.5E-13 109.1 11.2 113 680-812 34-159 (270)
94 PRK04266 fibrillarin; Provisio 98.9 1.5E-08 3.2E-13 107.2 13.7 106 690-815 68-178 (226)
95 PRK09489 rsmC 16S ribosomal RN 98.9 2.2E-08 4.8E-13 111.7 15.7 115 684-814 186-304 (342)
96 PRK09328 N5-glutamine S-adenos 98.9 2.1E-08 4.5E-13 106.4 14.6 121 678-812 92-237 (275)
97 PRK13943 protein-L-isoaspartat 98.9 1.5E-08 3.3E-13 112.4 13.5 110 684-813 70-180 (322)
98 PRK14121 tRNA (guanine-N(7)-)- 98.9 1.2E-08 2.6E-13 115.6 12.9 122 686-820 114-242 (390)
99 TIGR00406 prmA ribosomal prote 98.9 1.9E-08 4.1E-13 109.3 13.3 102 694-815 159-261 (288)
100 COG2518 Pcm Protein-L-isoaspar 98.9 2.3E-08 5.1E-13 104.7 13.0 108 684-814 62-170 (209)
101 PRK00517 prmA ribosomal protei 98.8 2.4E-08 5.2E-13 106.1 12.5 95 693-814 118-214 (250)
102 PRK11188 rrmJ 23S rRNA methylt 98.8 2.9E-08 6.3E-13 103.4 12.8 101 693-816 50-168 (209)
103 TIGR03704 PrmC_rel_meth putati 98.8 6.3E-08 1.4E-12 103.6 15.5 166 623-819 29-222 (251)
104 PRK14966 unknown domain/N5-glu 98.8 4.7E-08 1E-12 111.6 14.7 130 623-783 197-327 (423)
105 PF05724 TPMT: Thiopurine S-me 98.8 1.5E-08 3.3E-13 106.6 9.9 122 690-814 33-156 (218)
106 COG2264 PrmA Ribosomal protein 98.8 3.5E-08 7.7E-13 108.3 11.7 102 694-815 162-265 (300)
107 smart00650 rADc Ribosomal RNA 98.8 5.3E-08 1.2E-12 97.3 11.8 87 685-789 4-90 (169)
108 PRK01544 bifunctional N5-gluta 98.8 9.6E-08 2.1E-12 111.7 15.2 165 622-814 57-270 (506)
109 PF03291 Pox_MCEL: mRNA cappin 98.7 6.4E-08 1.4E-12 107.8 12.1 120 694-817 62-190 (331)
110 PRK14904 16S rRNA methyltransf 98.7 6.2E-08 1.3E-12 111.3 12.1 117 686-816 242-380 (445)
111 COG2242 CobL Precorrin-6B meth 98.7 1.6E-07 3.4E-12 97.0 13.8 116 681-815 21-137 (187)
112 KOG0544 FKBP-type peptidyl-pro 98.7 1.7E-08 3.7E-13 93.4 5.3 75 565-640 2-76 (108)
113 PTZ00146 fibrillarin; Provisio 98.7 8.6E-07 1.9E-11 97.4 19.4 103 692-812 130-236 (293)
114 PRK14901 16S rRNA methyltransf 98.7 1.4E-07 2.9E-12 108.2 13.4 120 684-815 242-386 (434)
115 TIGR00446 nop2p NOL1/NOP2/sun 98.7 8.6E-08 1.9E-12 103.0 10.8 114 689-815 66-201 (264)
116 KOG3010 Methyltransferase [Gen 98.6 5.6E-08 1.2E-12 103.5 7.8 107 684-807 22-129 (261)
117 PF06325 PrmA: Ribosomal prote 98.6 1.4E-07 2.9E-12 103.8 10.7 100 693-814 160-260 (295)
118 PRK03522 rumB 23S rRNA methylu 98.6 2.6E-07 5.7E-12 101.6 13.0 84 684-782 163-247 (315)
119 PRK14903 16S rRNA methyltransf 98.6 3E-07 6.4E-12 105.6 13.6 118 686-815 229-368 (431)
120 PLN02232 ubiquinone biosynthes 98.6 1.5E-07 3.2E-12 94.0 9.6 82 723-815 1-83 (160)
121 PRK13168 rumA 23S rRNA m(5)U19 98.6 3E-07 6.5E-12 105.6 12.9 113 680-813 283-400 (443)
122 PRK00811 spermidine synthase; 98.6 3.4E-07 7.4E-12 99.6 12.7 111 693-811 75-188 (283)
123 TIGR00563 rsmB ribosomal RNA s 98.6 4E-07 8.7E-12 104.1 13.8 120 684-816 228-371 (426)
124 PRK14902 16S rRNA methyltransf 98.6 2.5E-07 5.3E-12 106.2 12.1 119 685-815 241-381 (444)
125 PRK10901 16S rRNA methyltransf 98.6 4.6E-07 1E-11 103.7 14.3 116 685-814 235-373 (427)
126 PLN02781 Probable caffeoyl-CoA 98.6 8.8E-07 1.9E-11 94.0 15.3 113 684-812 58-176 (234)
127 COG4976 Predicted methyltransf 98.6 1.9E-08 4.2E-13 106.2 2.4 105 689-815 120-227 (287)
128 PRK15128 23S rRNA m(5)C1962 me 98.6 1.8E-06 4E-11 98.4 18.5 139 694-881 220-371 (396)
129 PHA03411 putative methyltransf 98.6 5.7E-07 1.2E-11 98.1 12.7 97 671-791 46-142 (279)
130 COG4123 Predicted O-methyltran 98.5 4E-07 8.7E-12 97.8 11.1 124 687-822 37-179 (248)
131 TIGR00438 rrmJ cell division p 98.5 3.8E-07 8.2E-12 92.6 9.9 100 693-815 31-148 (188)
132 COG2519 GCD14 tRNA(1-methylade 98.5 9.4E-07 2E-11 95.0 12.4 121 677-817 77-199 (256)
133 PLN02366 spermidine synthase 98.5 1.2E-06 2.7E-11 96.7 13.7 110 693-811 90-203 (308)
134 COG2813 RsmC 16S RNA G1207 met 98.5 1.1E-06 2.3E-11 96.6 12.8 109 684-807 148-259 (300)
135 PRK04457 spermidine synthase; 98.5 9.7E-07 2.1E-11 95.2 11.9 110 693-814 65-178 (262)
136 COG2890 HemK Methylase of poly 98.5 8.3E-07 1.8E-11 96.8 11.0 71 697-782 113-183 (280)
137 PRK14896 ksgA 16S ribosomal RN 98.4 8.5E-07 1.8E-11 95.0 10.4 88 682-789 17-104 (258)
138 PF00891 Methyltransf_2: O-met 98.4 1.2E-06 2.7E-11 91.9 11.4 106 685-813 91-199 (241)
139 PRK00274 ksgA 16S ribosomal RN 98.4 7.3E-07 1.6E-11 96.3 9.4 83 683-783 31-113 (272)
140 PHA03412 putative methyltransf 98.4 1.9E-06 4.1E-11 92.3 12.2 101 694-812 49-161 (241)
141 TIGR00417 speE spermidine synt 98.4 2.7E-06 5.9E-11 91.7 13.5 111 693-812 71-184 (270)
142 PF05891 Methyltransf_PK: AdoM 98.4 1.1E-06 2.3E-11 92.8 10.1 147 694-879 55-201 (218)
143 PRK10909 rsmD 16S rRNA m(2)G96 98.4 2.9E-06 6.4E-11 88.4 12.7 115 684-815 42-161 (199)
144 KOG1975 mRNA cap methyltransfe 98.4 1.1E-06 2.3E-11 97.0 9.6 117 693-817 116-241 (389)
145 COG2263 Predicted RNA methylas 98.4 2.1E-06 4.6E-11 89.0 11.3 85 686-788 37-125 (198)
146 TIGR00755 ksgA dimethyladenosi 98.4 2.6E-06 5.6E-11 90.8 12.0 83 681-782 16-101 (253)
147 TIGR00479 rumA 23S rRNA (uraci 98.4 2.5E-06 5.3E-11 97.5 12.6 111 682-812 280-395 (431)
148 TIGR02085 meth_trns_rumB 23S r 98.3 3.7E-06 8E-11 95.0 13.0 109 685-813 224-334 (374)
149 PRK01581 speE spermidine synth 98.3 3E-06 6.5E-11 95.7 11.9 113 693-813 149-267 (374)
150 PRK11783 rlmL 23S rRNA m(2)G24 98.3 1.6E-06 3.5E-11 105.1 10.0 106 694-815 538-657 (702)
151 PTZ00338 dimethyladenosine tra 98.3 2.4E-06 5.1E-11 93.9 10.0 90 683-789 25-114 (294)
152 PRK10611 chemotaxis methyltran 98.3 5.3E-06 1.2E-10 91.1 12.6 118 695-812 116-260 (287)
153 PF05219 DREV: DREV methyltran 98.2 5.8E-06 1.3E-10 89.4 11.1 94 694-813 94-188 (265)
154 PRK03612 spermidine synthase; 98.2 5.3E-06 1.2E-10 97.6 11.6 112 693-813 296-415 (521)
155 TIGR03439 methyl_EasF probable 98.2 3.2E-05 6.8E-10 86.2 16.3 130 669-813 44-197 (319)
156 PLN02476 O-methyltransferase 98.2 4.1E-05 9E-10 83.9 16.9 157 684-881 108-270 (278)
157 KOG2361 Predicted methyltransf 98.2 2.6E-06 5.7E-11 91.0 7.4 172 696-903 73-251 (264)
158 PF01596 Methyltransf_3: O-met 98.2 2.2E-05 4.9E-10 82.3 13.5 119 679-813 30-154 (205)
159 PRK04148 hypothetical protein; 98.2 2.3E-05 4.9E-10 77.6 12.6 107 683-817 5-113 (134)
160 PF08704 GCD14: tRNA methyltra 98.2 1.2E-05 2.5E-10 86.7 11.2 125 675-817 21-150 (247)
161 PF01170 UPF0020: Putative RNA 98.1 1.8E-05 4E-10 80.8 11.7 136 677-823 11-160 (179)
162 PLN02672 methionine S-methyltr 98.1 2E-05 4.2E-10 99.2 14.0 87 695-782 119-210 (1082)
163 TIGR00478 tly hemolysin TlyA f 98.1 1.6E-05 3.4E-10 84.8 10.8 111 684-817 64-176 (228)
164 PF02390 Methyltransf_4: Putat 98.1 9.7E-06 2.1E-10 84.1 8.8 113 697-822 20-142 (195)
165 KOG1499 Protein arginine N-met 98.1 1.2E-05 2.5E-10 89.9 9.8 110 692-816 58-169 (346)
166 PF10294 Methyltransf_16: Puta 98.1 2.5E-05 5.3E-10 79.3 11.4 113 691-816 42-159 (173)
167 PF06080 DUF938: Protein of un 98.1 5.9E-05 1.3E-09 79.3 14.4 106 697-814 28-142 (204)
168 PF08123 DOT1: Histone methyla 98.1 1.8E-05 3.9E-10 83.1 9.9 129 680-815 28-159 (205)
169 TIGR02143 trmA_only tRNA (urac 98.0 1.7E-05 3.7E-10 89.1 9.0 75 679-769 183-257 (353)
170 COG4122 Predicted O-methyltran 98.0 5.5E-05 1.2E-09 80.4 11.8 117 680-812 45-164 (219)
171 COG0500 SmtA SAM-dependent met 98.0 0.00013 2.9E-09 63.3 12.1 102 698-817 52-159 (257)
172 KOG3420 Predicted RNA methylas 98.0 1.3E-05 2.8E-10 80.3 6.5 96 675-785 29-124 (185)
173 PRK05031 tRNA (uracil-5-)-meth 98.0 2.3E-05 5E-10 88.3 9.3 74 680-769 193-266 (362)
174 PF01739 CheR: CheR methyltran 98.0 6.4E-05 1.4E-09 78.4 11.8 121 694-814 31-175 (196)
175 KOG2940 Predicted methyltransf 97.9 1.1E-05 2.3E-10 85.9 5.6 103 694-814 72-174 (325)
176 TIGR00095 RNA methyltransferas 97.9 0.00016 3.5E-09 74.7 13.9 124 677-815 31-161 (189)
177 COG1041 Predicted DNA modifica 97.9 6.7E-05 1.5E-09 84.2 11.7 114 686-814 189-311 (347)
178 PF09243 Rsm22: Mitochondrial 97.9 5.6E-05 1.2E-09 82.3 10.7 113 691-816 30-142 (274)
179 PRK11727 23S rRNA mA1618 methy 97.9 7.3E-05 1.6E-09 83.4 11.0 81 694-785 114-199 (321)
180 COG0030 KsgA Dimethyladenosine 97.9 5.5E-05 1.2E-09 82.1 9.4 89 683-789 19-108 (259)
181 PF05185 PRMT5: PRMT5 arginine 97.9 6E-05 1.3E-09 87.5 10.3 106 695-813 187-296 (448)
182 PLN02589 caffeoyl-CoA O-methyl 97.8 0.0001 2.2E-09 79.6 11.1 116 681-812 66-188 (247)
183 PLN02823 spermine synthase 97.8 0.00016 3.5E-09 81.2 12.8 108 694-812 103-218 (336)
184 COG2265 TrmA SAM-dependent met 97.8 0.0001 2.2E-09 85.3 11.3 117 678-813 277-396 (432)
185 COG1352 CheR Methylase of chem 97.8 0.00026 5.5E-09 77.4 13.5 119 694-812 96-240 (268)
186 COG3963 Phospholipid N-methylt 97.8 0.00017 3.6E-09 74.1 10.9 110 685-811 39-153 (194)
187 COG0220 Predicted S-adenosylme 97.8 0.00012 2.7E-09 78.0 10.3 114 695-821 49-172 (227)
188 PRK00050 16S rRNA m(4)C1402 me 97.7 6.2E-05 1.3E-09 83.2 7.8 87 683-783 8-98 (296)
189 KOG1661 Protein-L-isoaspartate 97.7 0.00018 3.9E-09 76.0 9.9 135 676-822 66-202 (237)
190 COG0421 SpeE Spermidine syntha 97.7 0.00028 6.1E-09 77.5 11.4 109 695-813 77-189 (282)
191 PRK04338 N(2),N(2)-dimethylgua 97.7 0.00022 4.7E-09 81.3 10.6 99 695-812 58-157 (382)
192 KOG1269 SAM-dependent methyltr 97.7 0.00014 3E-09 82.5 8.9 104 694-812 110-213 (364)
193 PF05958 tRNA_U5-meth_tr: tRNA 97.6 0.00016 3.4E-09 81.4 9.1 76 678-769 181-256 (352)
194 PRK00536 speE spermidine synth 97.6 0.00054 1.2E-08 74.7 11.7 99 693-812 71-169 (262)
195 PF02475 Met_10: Met-10+ like- 97.6 0.0002 4.4E-09 75.1 8.1 119 669-809 79-197 (200)
196 PF12147 Methyltransf_20: Puta 97.6 0.0013 2.9E-08 72.5 14.5 110 693-814 134-249 (311)
197 PF09445 Methyltransf_15: RNA 97.6 0.00051 1.1E-08 70.1 10.6 112 696-822 1-129 (163)
198 PF00035 dsrm: Double-stranded 97.5 0.00014 3.1E-09 61.5 5.1 36 57-92 32-67 (67)
199 KOG1500 Protein arginine N-met 97.5 0.00046 9.9E-09 77.0 10.2 110 688-813 171-281 (517)
200 PF13679 Methyltransf_32: Meth 97.5 0.0011 2.4E-08 65.0 11.3 105 693-816 24-134 (141)
201 KOG1331 Predicted methyltransf 97.5 0.00015 3.2E-09 79.4 5.5 98 694-814 45-144 (293)
202 PRK01544 bifunctional N5-gluta 97.4 0.00054 1.2E-08 80.7 10.4 115 694-821 347-470 (506)
203 KOG2904 Predicted methyltransf 97.4 0.00061 1.3E-08 74.5 9.9 101 671-783 122-230 (328)
204 PF03141 Methyltransf_29: Puta 97.4 9.4E-05 2E-09 86.0 3.8 112 683-815 102-221 (506)
205 PF01564 Spermine_synth: Sperm 97.4 0.0011 2.3E-08 71.4 11.2 110 693-811 75-188 (246)
206 PF00398 RrnaAD: Ribosomal RNA 97.4 0.0013 2.8E-08 70.9 11.8 113 680-814 16-133 (262)
207 PRK11933 yebU rRNA (cytosine-C 97.4 0.0018 3.8E-08 76.0 13.3 113 691-815 110-244 (470)
208 KOG0820 Ribosomal RNA adenine 97.4 0.00074 1.6E-08 73.8 9.3 83 684-782 48-130 (315)
209 PF05148 Methyltransf_8: Hypot 97.3 0.00051 1.1E-08 72.8 7.7 100 683-816 60-161 (219)
210 PF07942 N2227: N2227-like pro 97.3 0.0094 2E-07 65.5 17.2 156 694-879 56-242 (270)
211 COG1092 Predicted SAM-dependen 97.3 0.006 1.3E-07 70.1 16.2 109 694-815 217-337 (393)
212 PF04672 Methyltransf_19: S-ad 97.3 0.0011 2.3E-08 72.6 9.6 114 694-819 68-196 (267)
213 PRK11783 rlmL 23S rRNA m(2)G24 97.3 0.0022 4.7E-08 78.5 13.1 135 677-822 172-356 (702)
214 COG2520 Predicted methyltransf 97.2 0.0017 3.7E-08 73.2 10.6 118 667-807 164-282 (341)
215 KOG3178 Hydroxyindole-O-methyl 97.2 0.0019 4.1E-08 72.6 10.6 97 695-813 178-275 (342)
216 COG4076 Predicted RNA methylas 97.2 0.00064 1.4E-08 71.0 6.3 112 682-811 20-132 (252)
217 KOG3045 Predicted RNA methylas 97.2 0.0013 2.8E-08 71.6 8.6 99 684-818 169-269 (325)
218 smart00358 DSRM Double-strande 97.1 0.0016 3.4E-08 54.7 6.9 57 24-92 10-66 (67)
219 PF02384 N6_Mtase: N-6 DNA Met 97.1 0.0019 4.1E-08 70.6 9.3 122 684-815 36-185 (311)
220 PRK11760 putative 23S rRNA C24 97.1 0.0048 1E-07 69.7 12.6 87 693-807 210-296 (357)
221 PF10672 Methyltrans_SAM: S-ad 96.9 0.0032 6.9E-08 69.6 9.3 126 674-816 107-240 (286)
222 COG3897 Predicted methyltransf 96.8 0.0046 9.9E-08 65.1 8.1 108 691-818 76-184 (218)
223 TIGR02987 met_A_Alw26 type II 96.7 0.0087 1.9E-07 70.7 11.4 77 694-782 31-119 (524)
224 PF01728 FtsJ: FtsJ-like methy 96.7 0.0024 5.3E-08 64.4 5.8 97 694-814 23-140 (181)
225 TIGR00308 TRM1 tRNA(guanine-26 96.7 0.012 2.6E-07 67.3 12.0 100 696-813 46-147 (374)
226 COG0116 Predicted N6-adenine-s 96.7 0.015 3.3E-07 66.5 12.5 127 677-814 174-345 (381)
227 PF11968 DUF3321: Putative met 96.7 0.005 1.1E-07 65.6 7.8 89 696-815 53-151 (219)
228 TIGR01444 fkbM_fam methyltrans 96.7 0.0043 9.3E-08 59.6 6.7 59 697-768 1-59 (143)
229 PF02527 GidB: rRNA small subu 96.6 0.0052 1.1E-07 63.8 7.4 95 697-811 51-145 (184)
230 PF03602 Cons_hypoth95: Conser 96.6 0.0086 1.9E-07 61.9 8.9 119 683-816 29-156 (183)
231 cd00048 DSRM Double-stranded R 96.6 0.0069 1.5E-07 50.6 6.5 37 56-92 32-68 (68)
232 KOG3191 Predicted N6-DNA-methy 96.5 0.011 2.3E-07 61.8 8.5 80 690-783 39-118 (209)
233 COG2521 Predicted archaeal met 96.4 0.0065 1.4E-07 65.5 7.0 123 674-813 116-245 (287)
234 PF03059 NAS: Nicotianamine sy 96.4 0.027 5.9E-07 62.1 11.9 107 695-812 121-229 (276)
235 KOG3987 Uncharacterized conser 96.4 0.00064 1.4E-08 71.9 -0.6 87 694-806 112-198 (288)
236 KOG2187 tRNA uracil-5-methyltr 96.4 0.01 2.2E-07 69.8 8.5 73 682-769 371-443 (534)
237 KOG1663 O-methyltransferase [S 96.3 0.054 1.2E-06 58.4 12.8 116 680-811 59-180 (237)
238 PF04816 DUF633: Family of unk 96.2 0.018 3.8E-07 60.9 8.3 103 698-816 1-103 (205)
239 COG4627 Uncharacterized protei 96.1 0.0026 5.6E-08 64.8 1.9 93 768-874 40-133 (185)
240 COG0144 Sun tRNA and rRNA cyto 96.1 0.037 8.1E-07 62.8 11.3 119 685-815 147-290 (355)
241 KOG2915 tRNA(1-methyladenosine 96.1 0.034 7.4E-07 61.2 10.4 122 678-817 89-214 (314)
242 COG0742 N6-adenine-specific me 96.0 0.12 2.5E-06 54.4 13.2 120 683-816 30-157 (187)
243 KOG2352 Predicted spermine/spe 95.8 0.035 7.5E-07 65.1 9.3 102 697-813 51-162 (482)
244 PF07091 FmrO: Ribosomal RNA m 95.7 0.039 8.6E-07 60.1 8.6 108 694-817 105-212 (251)
245 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.7 0.035 7.6E-07 61.1 8.3 119 684-814 75-220 (283)
246 COG0293 FtsJ 23S rRNA methylas 95.7 0.11 2.4E-06 55.2 11.6 108 694-824 45-171 (205)
247 COG2384 Predicted SAM-dependen 95.6 0.069 1.5E-06 57.3 9.9 119 680-816 4-122 (226)
248 COG0357 GidB Predicted S-adeno 95.6 0.043 9.3E-07 58.6 8.2 94 695-807 68-161 (215)
249 TIGR00006 S-adenosyl-methyltra 95.5 0.041 9E-07 61.5 8.0 85 683-781 9-98 (305)
250 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.4 0.049 1.1E-06 59.5 8.2 119 694-816 56-203 (256)
251 PRK12371 ribonuclease III; Rev 95.4 0.036 7.7E-07 59.7 6.9 69 15-95 160-232 (235)
252 PHA03103 double-strand RNA-bin 95.3 0.035 7.7E-07 57.9 6.4 40 52-92 136-175 (183)
253 COG1189 Predicted rRNA methyla 95.3 0.075 1.6E-06 57.6 9.0 112 682-817 66-183 (245)
254 PF00254 FKBP_C: FKBP-type pep 95.3 0.02 4.4E-07 51.9 4.0 63 578-641 3-65 (94)
255 PHA02701 ORF020 dsRNA-binding 95.2 0.038 8.3E-07 57.6 6.2 69 15-95 107-178 (183)
256 COG4262 Predicted spermidine s 95.1 0.16 3.6E-06 58.0 11.2 110 694-812 289-405 (508)
257 TIGR03516 ppisom_GldI peptidyl 95.0 0.038 8.2E-07 57.2 5.7 79 560-640 65-144 (177)
258 PF01269 Fibrillarin: Fibrilla 94.2 0.24 5.2E-06 53.4 9.3 105 692-814 71-179 (229)
259 PF05971 Methyltransf_10: Prot 94.1 0.22 4.7E-06 55.8 9.2 97 681-789 81-191 (299)
260 PF03514 GRAS: GRAS domain fam 94.1 0.37 7.9E-06 55.3 11.3 125 684-818 100-248 (374)
261 COG4301 Uncharacterized conser 93.7 0.8 1.7E-05 50.4 12.3 133 669-814 47-194 (321)
262 PRK10742 putative methyltransf 93.7 0.31 6.7E-06 53.3 9.3 95 684-787 76-176 (250)
263 COG0545 FkpA FKBP-type peptidy 93.4 0.12 2.7E-06 54.7 5.5 77 560-640 97-173 (205)
264 KOG0543 FKBP-type peptidyl-pro 93.3 0.076 1.6E-06 61.0 4.1 61 576-638 5-65 (397)
265 PF13578 Methyltransf_24: Meth 93.2 0.043 9.4E-07 50.6 1.7 98 699-811 1-102 (106)
266 KOG2730 Methylase [General fun 93.1 0.11 2.4E-06 55.9 4.6 62 694-769 94-155 (263)
267 PRK00102 rnc ribonuclease III; 93.0 0.2 4.3E-06 52.8 6.4 68 14-93 156-227 (229)
268 PRK15095 FKBP-type peptidyl-pr 93.0 0.1 2.2E-06 52.9 4.1 63 581-646 6-68 (156)
269 PF14709 DND1_DSRM: double str 92.7 0.12 2.6E-06 47.0 3.7 40 54-93 31-80 (80)
270 COG5459 Predicted rRNA methyla 92.5 0.25 5.4E-06 56.3 6.5 113 691-815 110-227 (484)
271 TIGR02191 RNaseIII ribonucleas 92.4 0.27 5.8E-06 51.4 6.2 67 14-92 150-220 (220)
272 KOG1709 Guanidinoacetate methy 92.4 0.89 1.9E-05 49.2 10.0 99 693-808 100-200 (271)
273 cd00048 DSRM Double-stranded R 92.3 0.17 3.7E-06 42.2 3.9 67 394-497 2-68 (68)
274 cd08031 LARP_4_5_like La RNA-b 92.1 0.079 1.7E-06 48.0 1.7 73 108-202 2-74 (75)
275 cd08030 LA_like_plant La-motif 91.9 0.099 2.1E-06 49.0 2.1 86 108-203 3-90 (90)
276 KOG4058 Uncharacterized conser 91.6 0.32 7E-06 49.8 5.5 93 677-784 55-147 (199)
277 PRK11570 peptidyl-prolyl cis-t 91.4 0.3 6.5E-06 51.8 5.4 78 562-645 100-177 (206)
278 PF03368 Dicer_dimer: Dicer di 91.4 0.32 7E-06 45.1 4.9 45 57-101 32-83 (90)
279 smart00358 DSRM Double-strande 91.4 0.27 5.9E-06 41.2 4.1 66 394-497 1-66 (67)
280 COG0571 Rnc dsRNA-specific rib 91.1 0.43 9.4E-06 51.8 6.2 71 14-96 163-233 (235)
281 PF06859 Bin3: Bicoid-interact 90.9 0.09 2E-06 50.9 0.8 105 775-898 1-110 (110)
282 PF04989 CmcI: Cephalosporin h 90.8 0.36 7.9E-06 51.4 5.3 112 692-817 30-151 (206)
283 COG0275 Predicted S-adenosylme 90.8 0.78 1.7E-05 51.6 7.9 86 683-781 12-102 (314)
284 PF14709 DND1_DSRM: double str 90.7 0.48 1E-05 43.2 5.3 75 393-497 2-79 (80)
285 PF01795 Methyltransf_5: MraW 90.5 0.75 1.6E-05 51.8 7.6 85 683-781 9-99 (310)
286 KOG0549 FKBP-type peptidyl-pro 90.4 0.3 6.5E-06 51.1 4.1 59 581-640 86-144 (188)
287 smart00715 LA Domain in the RN 89.2 0.21 4.5E-06 45.8 1.7 79 105-204 2-80 (80)
288 PRK12372 ribonuclease III; Rev 89.2 0.8 1.7E-05 53.3 6.7 66 17-94 152-222 (413)
289 KOG3115 Methyltransferase-like 89.2 0.65 1.4E-05 49.8 5.5 67 695-767 61-127 (249)
290 PF02636 Methyltransf_28: Puta 89.0 1.2 2.6E-05 47.9 7.6 84 695-789 19-109 (252)
291 PF07757 AdoMet_MTase: Predict 88.9 0.29 6.2E-06 47.6 2.4 32 694-728 58-89 (112)
292 KOG1501 Arginine N-methyltrans 88.6 0.79 1.7E-05 53.6 6.1 99 696-807 68-168 (636)
293 PRK10737 FKBP-type peptidyl-pr 87.7 0.57 1.2E-05 49.6 4.0 62 581-646 4-65 (196)
294 KOG1562 Spermidine synthase [A 87.6 2.1 4.6E-05 48.2 8.4 111 693-813 120-235 (337)
295 PF11599 AviRa: RRNA methyltra 87.6 0.67 1.4E-05 50.0 4.4 134 678-811 35-212 (246)
296 cd00315 Cyt_C5_DNA_methylase C 87.5 1.1 2.5E-05 49.0 6.4 66 697-782 2-69 (275)
297 cd07323 LAM LA motif RNA-bindi 87.1 0.27 5.8E-06 44.5 1.1 74 108-203 2-75 (75)
298 KOG3201 Uncharacterized conser 86.7 0.94 2E-05 47.2 4.7 120 686-817 21-144 (201)
299 COG1889 NOP1 Fibrillarin-like 85.9 6.2 0.00013 42.6 10.3 105 692-815 74-182 (231)
300 PRK10902 FKBP-type peptidyl-pr 85.6 1.1 2.4E-05 49.5 5.0 77 560-640 142-218 (269)
301 TIGR00561 pntA NAD(P) transhyd 85.4 5.7 0.00012 47.8 11.0 111 694-811 163-281 (511)
302 PHA00738 putative HTH transcri 84.9 0.2 4.4E-06 48.4 -0.9 32 612-643 35-71 (108)
303 PF04445 SAM_MT: Putative SAM- 84.7 2.8 6E-05 45.7 7.4 95 686-787 65-163 (234)
304 COG4798 Predicted methyltransf 84.3 1.7 3.7E-05 46.5 5.4 119 687-814 41-167 (238)
305 TIGR00027 mthyl_TIGR00027 meth 84.2 66 0.0014 35.4 17.8 169 679-876 63-247 (260)
306 cd08029 LA_like_fungal La-moti 83.8 0.61 1.3E-05 42.5 1.7 75 108-203 2-76 (76)
307 cd08034 LARP_1_2 La RNA-bindin 83.8 0.47 1E-05 42.9 0.9 72 108-203 2-73 (73)
308 PF06962 rRNA_methylase: Putat 83.6 6.2 0.00014 40.0 8.8 79 721-813 1-91 (140)
309 KOG0552 FKBP-type peptidyl-pro 83.6 1.6 3.5E-05 47.2 5.1 79 560-640 116-195 (226)
310 KOG2793 Putative N2,N2-dimethy 82.9 7.1 0.00015 43.0 9.6 115 694-817 86-203 (248)
311 cd08033 LARP_6 La RNA-binding 82.8 0.53 1.2E-05 43.0 0.9 76 108-203 2-77 (77)
312 PRK09424 pntA NAD(P) transhydr 82.4 16 0.00035 44.1 13.1 43 693-737 163-206 (509)
313 cd08038 LARP_2 La RNA-binding 81.8 0.73 1.6E-05 41.8 1.4 69 108-198 2-70 (73)
314 COG0286 HsdM Type I restrictio 81.5 8.8 0.00019 45.8 10.5 91 681-783 173-272 (489)
315 KOG2798 Putative trehalase [Ca 81.5 7.3 0.00016 44.4 9.2 153 695-876 151-334 (369)
316 PF01555 N6_N4_Mtase: DNA meth 81.1 4.2 9.2E-05 41.3 6.8 53 681-737 179-231 (231)
317 COG3510 CmcI Cephalosporin hyd 80.8 7.6 0.00016 41.7 8.5 107 690-816 65-183 (237)
318 PRK11524 putative methyltransf 80.7 4 8.7E-05 44.9 6.9 45 693-740 207-251 (284)
319 KOG1122 tRNA and rRNA cytosine 80.6 6.2 0.00013 46.4 8.5 111 689-815 236-373 (460)
320 PHA01634 hypothetical protein 79.8 3.7 8.1E-05 41.4 5.6 46 693-740 27-72 (156)
321 COG1047 SlpA FKBP-type peptidy 78.7 2.8 6.1E-05 43.8 4.6 64 581-647 4-67 (174)
322 KOG4589 Cell division protein 78.5 2.3 5E-05 45.3 3.9 35 694-728 69-103 (232)
323 PF00035 dsrm: Double-stranded 78.4 3 6.5E-05 35.1 4.0 67 394-497 1-67 (67)
324 cd08035 LARP_4 La RNA-binding 78.0 1.7 3.6E-05 39.8 2.4 70 108-199 2-71 (75)
325 PRK14718 ribonuclease III; Pro 77.3 4.7 0.0001 47.7 6.3 66 16-93 151-221 (467)
326 KOG2651 rRNA adenine N-6-methy 77.3 5.4 0.00012 46.4 6.7 55 681-737 139-194 (476)
327 PF14954 LIX1: Limb expression 77.0 2.2 4.8E-05 45.9 3.3 41 50-91 52-94 (252)
328 PF02254 TrkA_N: TrkA-N domain 76.5 5.8 0.00013 36.9 5.7 81 720-824 22-107 (116)
329 cd08032 LARP_7 La RNA-binding 76.2 2.2 4.7E-05 39.6 2.7 81 103-203 2-82 (82)
330 PF01861 DUF43: Protein of unk 75.7 16 0.00035 40.2 9.5 117 669-807 20-141 (243)
331 COG1064 AdhP Zn-dependent alco 75.2 8.9 0.00019 44.0 7.7 95 691-814 163-261 (339)
332 PRK13699 putative methylase; P 74.9 9.5 0.00021 41.0 7.5 46 693-741 162-207 (227)
333 COG3315 O-Methyltransferase in 72.5 30 0.00064 39.0 10.9 125 678-814 73-210 (297)
334 cd08028 LARP_3 La RNA-binding 70.6 2.7 5.9E-05 38.9 1.9 79 105-203 3-82 (82)
335 COG1565 Uncharacterized conser 70.5 9.2 0.0002 44.3 6.4 81 693-789 76-163 (370)
336 PRK10141 DNA-binding transcrip 70.4 1 2.2E-05 44.1 -1.0 31 612-642 39-74 (117)
337 KOG0543 FKBP-type peptidyl-pro 70.4 7.5 0.00016 45.3 5.7 72 564-640 84-157 (397)
338 KOG2671 Putative RNA methylase 70.1 2.5 5.4E-05 48.5 1.8 89 684-781 197-290 (421)
339 cd08283 FDH_like_1 Glutathione 68.7 29 0.00064 39.3 10.0 49 689-738 179-228 (386)
340 PLN02668 indole-3-acetate carb 66.0 47 0.001 38.9 11.0 26 764-789 151-176 (386)
341 PF03141 Methyltransf_29: Puta 64.5 17 0.00036 43.7 7.1 98 694-811 365-465 (506)
342 cd08036 LARP_5 La RNA-binding 63.5 1.2 2.6E-05 40.7 -1.8 70 108-199 2-71 (75)
343 PF00145 DNA_methylase: C-5 cy 62.6 16 0.00034 39.6 6.1 64 697-781 2-67 (335)
344 KOG3924 Putative protein methy 62.2 23 0.0005 41.6 7.5 121 686-813 184-307 (419)
345 COG4017 Uncharacterized protei 62.1 48 0.001 35.9 9.2 156 680-876 30-195 (254)
346 PF03269 DUF268: Caenorhabditi 62.0 5.7 0.00012 41.5 2.4 44 773-817 61-115 (177)
347 PF02005 TRM: N2,N2-dimethylgu 61.9 14 0.0003 42.9 5.8 104 694-814 49-155 (377)
348 COG1063 Tdh Threonine dehydrog 61.9 41 0.0009 38.2 9.5 100 694-817 168-274 (350)
349 PRK09880 L-idonate 5-dehydroge 61.1 44 0.00096 37.1 9.4 45 692-737 167-212 (343)
350 COG3129 Predicted SAM-dependen 61.0 28 0.0006 38.6 7.4 95 682-789 60-167 (292)
351 KOG2539 Mitochondrial/chloropl 59.5 17 0.00037 43.4 5.9 114 692-814 198-316 (491)
352 COG1255 Uncharacterized protei 59.1 50 0.0011 33.1 8.1 92 694-817 13-106 (129)
353 TIGR00675 dcm DNA-methyltransf 59.0 13 0.00029 41.6 5.0 64 698-781 1-65 (315)
354 cd08037 LARP_1 La RNA-binding 58.0 2.8 6E-05 38.2 -0.5 69 108-198 2-70 (73)
355 KOG1596 Fibrillarin and relate 57.5 36 0.00079 37.9 7.6 101 692-814 154-262 (317)
356 PRK10458 DNA cytosine methylas 56.7 49 0.0011 39.7 9.2 61 676-738 63-129 (467)
357 PF11312 DUF3115: Protein of u 54.5 26 0.00056 40.0 6.1 118 696-815 88-245 (315)
358 KOG2920 Predicted methyltransf 53.8 8.4 0.00018 43.1 2.2 39 693-733 115-153 (282)
359 PF11899 DUF3419: Protein of u 53.3 18 0.0004 42.0 4.9 59 755-813 273-334 (380)
360 COG1867 TRM1 N2,N2-dimethylgua 53.2 27 0.00058 40.7 6.1 101 695-814 53-155 (380)
361 KOG2198 tRNA cytosine-5-methyl 51.8 99 0.0021 36.2 10.2 112 691-815 152-298 (375)
362 PRK07819 3-hydroxybutyryl-CoA 51.5 31 0.00068 38.2 6.2 108 696-814 6-121 (286)
363 PRK03562 glutathione-regulated 51.4 67 0.0015 39.6 9.5 96 695-817 400-502 (621)
364 PF06690 DUF1188: Protein of u 50.7 1.4E+02 0.003 33.2 10.6 105 679-818 26-131 (252)
365 PRK07417 arogenate dehydrogena 50.6 1E+02 0.0022 33.8 9.9 85 697-811 2-88 (279)
366 PF04072 LCM: Leucine carboxyl 50.5 1E+02 0.0022 31.8 9.3 111 679-800 58-182 (183)
367 KOG1855 Predicted RNA-binding 49.4 12 0.00025 44.1 2.5 94 102-215 136-229 (484)
368 TIGR00872 gnd_rel 6-phosphoglu 48.8 66 0.0014 35.7 8.2 93 697-817 2-96 (298)
369 PF02737 3HCDH_N: 3-hydroxyacy 48.8 53 0.0012 33.9 7.0 158 697-874 1-174 (180)
370 PRK03659 glutathione-regulated 48.0 70 0.0015 39.2 9.0 100 696-822 401-507 (601)
371 PRK08306 dipicolinate synthase 48.0 1.2E+02 0.0025 34.0 10.0 88 694-813 151-240 (296)
372 COG2933 Predicted SAM-dependen 47.6 81 0.0018 35.7 8.4 87 693-807 210-296 (358)
373 COG0569 TrkA K+ transport syst 47.4 1.6E+02 0.0034 31.7 10.5 104 696-824 1-111 (225)
374 PRK09496 trkA potassium transp 47.3 2.9E+02 0.0063 31.9 13.4 104 694-822 230-339 (453)
375 PRK07066 3-hydroxybutyryl-CoA 47.2 2.3E+02 0.0051 32.3 12.3 162 695-874 7-179 (321)
376 PF03686 UPF0146: Uncharacteri 43.6 55 0.0012 33.0 5.8 93 693-817 12-106 (127)
377 cd08230 glucose_DH Glucose deh 43.1 96 0.0021 34.6 8.4 43 693-737 171-217 (355)
378 PRK09260 3-hydroxybutyryl-CoA 43.1 1.9E+02 0.0042 31.7 10.7 42 696-740 2-45 (288)
379 PRK11730 fadB multifunctional 40.5 2E+02 0.0044 36.2 11.5 106 696-812 314-426 (715)
380 PRK08293 3-hydroxybutyryl-CoA 40.5 50 0.0011 36.3 5.6 42 696-740 4-47 (287)
381 PRK05808 3-hydroxybutyryl-CoA 40.2 1.4E+02 0.003 32.6 9.0 109 696-815 4-119 (282)
382 PF03492 Methyltransf_7: SAM d 39.5 86 0.0019 35.8 7.4 90 694-789 16-121 (334)
383 COG0270 Dcm Site-specific DNA 39.3 59 0.0013 36.7 6.1 69 695-782 3-74 (328)
384 cd00401 AdoHcyase S-adenosyl-L 38.9 1.3E+02 0.0027 35.7 8.8 43 693-737 200-243 (413)
385 KOG0822 Protein kinase inhibit 38.8 77 0.0017 38.8 7.0 104 696-812 369-476 (649)
386 PLN02545 3-hydroxybutyryl-CoA 38.7 1.5E+02 0.0032 32.6 9.0 42 696-740 5-48 (295)
387 PRK11154 fadJ multifunctional 38.4 2.1E+02 0.0045 36.0 11.1 162 695-876 309-487 (708)
388 TIGR00518 alaDH alanine dehydr 38.2 63 0.0014 37.3 6.2 41 694-737 166-208 (370)
389 TIGR02441 fa_ox_alpha_mit fatt 38.0 1.9E+02 0.0041 36.7 10.7 161 696-876 336-512 (737)
390 PF11899 DUF3419: Protein of u 37.8 78 0.0017 37.0 6.9 47 687-736 28-74 (380)
391 PRK01747 mnmC bifunctional tRN 36.3 1.1E+02 0.0023 37.8 8.1 120 694-813 57-205 (662)
392 cd08232 idonate-5-DH L-idonate 36.2 1.1E+02 0.0024 33.4 7.5 44 693-737 164-208 (339)
393 PRK05854 short chain dehydroge 36.1 1.7E+02 0.0037 32.4 8.9 78 694-785 13-103 (313)
394 PRK08217 fabG 3-ketoacyl-(acyl 35.6 1.2E+02 0.0027 31.2 7.4 75 694-784 4-91 (253)
395 PRK10669 putative cation:proto 34.7 1.9E+02 0.0042 34.9 9.8 92 696-815 418-517 (558)
396 PF05050 Methyltransf_21: Meth 33.3 59 0.0013 31.4 4.3 38 700-738 1-42 (167)
397 PRK06125 short chain dehydroge 33.1 1.9E+02 0.0041 30.5 8.4 76 694-784 6-90 (259)
398 PF07279 DUF1442: Protein of u 32.0 3.5E+02 0.0075 29.8 10.0 86 684-782 31-122 (218)
399 COG5379 BtaA S-adenosylmethion 31.7 1.2E+02 0.0026 34.9 6.6 49 690-741 59-107 (414)
400 PRK07062 short chain dehydroge 31.6 2.2E+02 0.0047 30.0 8.6 78 694-785 7-97 (265)
401 TIGR00497 hsdM type I restrict 31.3 4.7E+02 0.01 31.5 12.1 46 694-739 217-265 (501)
402 PRK09496 trkA potassium transp 31.1 3.5E+02 0.0075 31.3 10.7 93 697-815 2-101 (453)
403 PRK07502 cyclohexadienyl dehyd 31.0 1.7E+02 0.0037 32.4 7.9 40 696-736 7-48 (307)
404 COG5379 BtaA S-adenosylmethion 30.9 95 0.0021 35.6 5.8 59 756-814 306-367 (414)
405 KOG0821 Predicted ribosomal RN 30.4 93 0.002 34.4 5.5 68 686-768 42-109 (326)
406 TIGR02822 adh_fam_2 zinc-bindi 30.4 2.6E+02 0.0056 31.1 9.2 46 690-737 161-207 (329)
407 PRK08703 short chain dehydroge 30.3 2.1E+02 0.0046 29.6 8.0 43 694-739 5-50 (239)
408 PRK08339 short chain dehydroge 30.1 2E+02 0.0043 30.7 8.0 76 694-784 7-94 (263)
409 TIGR02437 FadB fatty oxidation 30.1 4.2E+02 0.0091 33.6 11.9 162 695-876 313-490 (714)
410 PF05206 TRM13: Methyltransfer 29.5 1E+02 0.0022 34.3 5.8 36 694-729 18-57 (259)
411 PRK08340 glucose-1-dehydrogena 29.2 2E+02 0.0043 30.4 7.8 71 697-784 2-85 (259)
412 PRK07890 short chain dehydroge 28.9 2.2E+02 0.0049 29.6 8.0 76 694-785 4-92 (258)
413 PRK06197 short chain dehydroge 28.5 2.7E+02 0.0059 30.3 8.9 79 693-785 14-105 (306)
414 KOG1099 SAM-dependent methyltr 28.1 1E+02 0.0022 34.4 5.2 96 695-813 42-162 (294)
415 PRK08945 putative oxoacyl-(acy 27.8 2E+02 0.0043 30.0 7.4 76 694-784 11-101 (247)
416 PF09263 PEX-2N: Peroxisome bi 27.7 39 0.00084 31.9 1.8 18 256-273 66-83 (87)
417 PRK12829 short chain dehydroge 27.3 3E+02 0.0064 28.7 8.6 78 689-784 5-95 (264)
418 PRK08268 3-hydroxy-acyl-CoA de 27.2 4.7E+02 0.01 31.7 11.2 106 695-811 7-119 (507)
419 PF02153 PDH: Prephenate dehyd 27.1 1.8E+02 0.0038 31.7 7.1 78 709-814 2-79 (258)
420 PRK09242 tropinone reductase; 27.0 3.1E+02 0.0067 28.7 8.7 78 694-785 8-98 (257)
421 TIGR00115 tig trigger factor. 27.0 90 0.002 36.1 5.1 62 580-645 147-208 (408)
422 TIGR02440 FadJ fatty oxidation 26.9 4E+02 0.0087 33.6 10.9 161 696-876 305-482 (699)
423 PF02826 2-Hacid_dh_C: D-isome 26.7 95 0.0021 31.8 4.7 94 692-815 33-128 (178)
424 PRK06130 3-hydroxybutyryl-CoA 26.6 3.6E+02 0.0079 29.8 9.5 41 696-739 5-47 (311)
425 KOG0024 Sorbitol dehydrogenase 26.5 95 0.0021 36.0 4.9 45 692-737 167-212 (354)
426 PRK08213 gluconate 5-dehydroge 26.4 3.1E+02 0.0067 28.8 8.6 77 693-785 10-99 (259)
427 PLN02256 arogenate dehydrogena 26.3 4E+02 0.0086 30.1 9.8 47 678-730 22-70 (304)
428 cd01065 NAD_bind_Shikimate_DH 26.3 2.6E+02 0.0056 27.1 7.5 44 693-738 17-62 (155)
429 PRK06196 oxidoreductase; Provi 26.2 2.4E+02 0.0052 31.0 8.0 72 694-785 25-109 (315)
430 PRK12921 2-dehydropantoate 2-r 26.1 3.1E+02 0.0067 29.9 8.7 35 697-735 2-38 (305)
431 PRK07478 short chain dehydroge 25.7 3.3E+02 0.0072 28.5 8.6 76 694-785 5-93 (254)
432 PRK08507 prephenate dehydrogen 25.4 2.7E+02 0.0059 30.3 8.1 39 697-736 2-42 (275)
433 PRK07097 gluconate 5-dehydroge 25.4 3.2E+02 0.007 28.9 8.6 76 694-785 9-97 (265)
434 PRK05876 short chain dehydroge 25.4 3.5E+02 0.0075 29.2 8.9 76 694-785 5-93 (275)
435 TIGR02279 PaaC-3OHAcCoADH 3-hy 25.0 5.6E+02 0.012 31.1 11.3 46 694-742 4-51 (503)
436 PF10354 DUF2431: Domain of un 24.8 4.1E+02 0.0088 27.5 8.8 101 701-815 3-127 (166)
437 PRK08251 short chain dehydroge 24.7 3.7E+02 0.008 27.9 8.7 77 695-785 2-91 (248)
438 PRK06522 2-dehydropantoate 2-r 24.5 5.1E+02 0.011 28.1 10.0 37 697-736 2-40 (304)
439 PRK07530 3-hydroxybutyryl-CoA 24.5 1.6E+02 0.0034 32.3 6.2 42 696-740 5-48 (292)
440 PLN02253 xanthoxin dehydrogena 24.3 2.8E+02 0.0061 29.6 7.9 74 694-784 17-103 (280)
441 COG1748 LYS9 Saccharopine dehy 24.3 2E+02 0.0042 34.0 7.1 95 696-816 2-101 (389)
442 PRK07063 short chain dehydroge 24.3 3.3E+02 0.0072 28.6 8.3 78 694-785 6-96 (260)
443 cd01080 NAD_bind_m-THF_DH_Cycl 24.2 2.3E+02 0.005 29.4 6.9 55 672-729 21-78 (168)
444 PRK05872 short chain dehydroge 24.2 3E+02 0.0064 30.0 8.2 75 694-785 8-95 (296)
445 TIGR00936 ahcY adenosylhomocys 24.1 2.3E+02 0.0049 33.6 7.6 41 693-735 193-234 (406)
446 PF00106 adh_short: short chai 24.0 1.9E+02 0.0041 28.0 6.0 73 697-784 2-89 (167)
447 PRK12480 D-lactate dehydrogena 24.0 2.2E+02 0.0047 32.5 7.3 88 693-815 144-235 (330)
448 KOG1098 Putative SAM-dependent 23.8 89 0.0019 38.9 4.3 36 694-729 44-79 (780)
449 PRK07102 short chain dehydroge 23.7 2.7E+02 0.0058 29.0 7.4 73 696-783 2-84 (243)
450 PRK07814 short chain dehydroge 23.7 2.9E+02 0.0064 29.2 7.9 74 694-783 9-95 (263)
451 TIGR02356 adenyl_thiF thiazole 23.6 2.1E+02 0.0045 30.1 6.6 34 693-728 19-54 (202)
452 PF10727 Rossmann-like: Rossma 23.1 3.8E+02 0.0082 26.7 7.9 91 694-814 9-104 (127)
453 PRK06200 2,3-dihydroxy-2,3-dih 23.1 3E+02 0.0065 29.0 7.7 73 694-785 5-90 (263)
454 PRK08643 acetoin reductase; Va 23.1 3.8E+02 0.0082 28.0 8.5 74 695-784 2-88 (256)
455 PRK13394 3-hydroxybutyrate deh 23.0 3.7E+02 0.008 28.0 8.3 78 694-787 6-96 (262)
456 COG0686 Ald Alanine dehydrogen 22.9 2.7E+02 0.0058 32.5 7.5 100 695-814 168-268 (371)
457 PRK07831 short chain dehydroge 22.8 3.4E+02 0.0073 28.6 8.1 78 694-785 16-107 (262)
458 cd08254 hydroxyacyl_CoA_DH 6-h 22.7 2.1E+02 0.0047 30.8 6.7 44 692-737 163-207 (338)
459 COG0287 TyrA Prephenate dehydr 22.7 1.9E+02 0.004 32.5 6.3 93 696-814 4-98 (279)
460 PRK07024 short chain dehydroge 22.6 3.5E+02 0.0076 28.5 8.1 73 696-785 3-88 (257)
461 PRK08324 short chain dehydroge 22.5 5.3E+02 0.012 32.1 10.8 74 694-784 421-507 (681)
462 cd05188 MDR Medium chain reduc 22.5 2.5E+02 0.0055 28.9 6.9 43 693-737 133-176 (271)
463 PRK05867 short chain dehydroge 22.1 3.5E+02 0.0077 28.3 8.0 76 694-785 8-96 (253)
464 PTZ00357 methyltransferase; Pr 22.1 1.7E+02 0.0037 37.2 6.2 100 697-806 703-823 (1072)
465 PRK01490 tig trigger factor; P 22.0 1.3E+02 0.0027 35.3 5.1 62 580-645 158-219 (435)
466 PRK07904 short chain dehydroge 21.9 2.9E+02 0.0062 29.4 7.4 76 694-783 7-95 (253)
467 PRK07677 short chain dehydroge 21.9 3.6E+02 0.0078 28.2 8.0 72 696-783 2-86 (252)
468 PRK09072 short chain dehydroge 21.7 3.7E+02 0.008 28.4 8.1 77 694-787 4-92 (263)
469 PRK05786 fabG 3-ketoacyl-(acyl 21.6 3.7E+02 0.0081 27.6 7.9 73 694-783 4-89 (238)
470 PRK05650 short chain dehydroge 21.4 2.8E+02 0.0062 29.4 7.2 73 697-785 2-87 (270)
471 KOG2777 tRNA-specific adenosin 21.1 1.9E+02 0.0041 35.6 6.3 76 51-129 113-196 (542)
472 PRK06172 short chain dehydroge 21.0 4.1E+02 0.0089 27.7 8.2 76 694-785 6-94 (253)
473 PRK07576 short chain dehydroge 20.8 4.4E+02 0.0095 28.0 8.5 75 693-783 7-94 (264)
474 COG0863 DNA modification methy 20.7 3E+02 0.0065 29.7 7.3 47 692-741 220-266 (302)
475 PRK07523 gluconate 5-dehydroge 20.7 4.5E+02 0.0097 27.5 8.4 76 694-785 9-97 (255)
476 PRK06124 gluconate 5-dehydroge 20.6 4.3E+02 0.0092 27.6 8.2 76 694-785 10-98 (256)
477 PF02086 MethyltransfD12: D12 20.5 1.6E+02 0.0035 31.2 5.1 54 684-740 10-63 (260)
478 PRK06914 short chain dehydroge 20.5 4E+02 0.0087 28.3 8.1 76 695-784 3-90 (280)
479 PRK05476 S-adenosyl-L-homocyst 20.3 2.7E+02 0.0058 33.3 7.2 85 694-812 211-297 (425)
480 PRK08277 D-mannonate oxidoredu 20.2 3.9E+02 0.0085 28.4 8.0 75 694-784 9-96 (278)
481 PRK08589 short chain dehydroge 20.0 4.3E+02 0.0094 28.2 8.3 75 694-785 5-92 (272)
No 1
>KOG1045 consensus Uncharacterized conserved protein HEN1/CORYMBOSA2 [Function unknown]
Probab=100.00 E-value=3.1e-39 Score=353.44 Aligned_cols=366 Identities=28% Similarity=0.330 Sum_probs=289.3
Q ss_pred cceEEeeecCccccccccCC--CCCccccccccCCCCCccccccccccccceeeeeccceeecCCccccccchhhhhhhh
Q 002345 281 SEMRLYFAAPKSYLLDLSSD--LPNVEEVVDFEGSLNPRASYLYGQDIYGDAILASIGYTRKSEGLFHEDITLQSYYRML 358 (933)
Q Consensus 281 ~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~n~ras~~~~~~i~g~ai~a~~g~~~~~~~l~~~~~~~~~~~r~~ 358 (933)
.|| |...|+ +.+.. +.....-.|+..++ +||+|.|||+|+||+|+|+|||+||
T Consensus 6 ~~c--~~~~~~----n~~e~~~~~~~~~~~~l~~~r-~r~~fk~~qd~~~~~~~a~~g~~w~------------------ 60 (404)
T KOG1045|consen 6 DEC--YSDIPK----NSLEAALLTPIDFSPPLAKQR-ARASFKNLQDIHGDKILADVGCGWR------------------ 60 (404)
T ss_pred CcC--cccCCc----chhhhccccccccccHHHHHh-hhhhhhcccCCCcchhhhhcCCccc------------------
Confidence 367 888888 22222 23344447888899 9999999999999999999999996
Q ss_pred hccCCCcccccchhhhhhhcCCcceeeccccCCCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccc
Q 002345 359 IHLTPSGVYKLSREAILTAELPMAFTTRTNWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESA 438 (933)
Q Consensus 359 ~~~~p~g~yk~sr~~~~~a~lp~~~t~~~~w~g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (933)
|.+|+|+||.||++++.|.||..+| +.+|||++||.+||+||||++|.+|++....++++.++++.++.+++++....
T Consensus 61 -~~s~n~~~k~s~~~~~~agl~f~~~-k~~~r~~~~~~~l~dF~r~r~l~l~I~~~~G~~v~s~s~i~~~d~v~~~e~ie 138 (404)
T KOG1045|consen 61 -GSSYNGIYKESRTIEILAGLDFNET-KSVWRGPSVRPILGDFLRSRQLPLPILLLSGNVVDSLSKILRSDAVLAIELIE 138 (404)
T ss_pred -ccccccccccchhhHHHcCCCchhh-hhhhcCcchhHHHHHHhhhhcCCcceeeecCCccccHHHHHhhhhhhhhhhhh
Confidence 9999999999999999999999998 99999999999999999999999999999999999999999999998776544
Q ss_pred cccccccCCCcccCCCc---eeEEEEEeeccCCcceecCchhhhhhhhhhHhhhhhHHHHHHHhhhCCCCCCcccccccc
Q 002345 439 ETGKECTSGGGTAASDN---VRCEVKIFSKSRDPILECSPKEFYKKQNESIENASLKVLSWLNAYFKDPDIPLEKLNNLV 515 (933)
Q Consensus 439 ~~~~~~~~~~~~~~~~~---f~c~v~~~s~~~~~~~~~~~~~~~~~~~dai~~a~l~~l~~~~~~~~~~~~~~~~~~~~~ 515 (933)
..+++. ...-.++ |+|+++|..+.+++.++|++.+||.+.++||||++++++.|..+-|++ +.+..+
T Consensus 139 h~ds~~----~~~ip~~vfG~~~p~~iv~stpn~~~N~~~~kf~~l~p~~~~~~s~h~feW~r~eFa~------w~~~vd 208 (404)
T KOG1045|consen 139 HVDSEP----LLSIPELVFGFLCPVKIVKSTPNLVFNCIFRKFNTLLPSAIRRHSDHKFEWPRKEFAD------WALYVD 208 (404)
T ss_pred cccchh----hhccchhhcccccceEEEEeCCCccccchhhhhcccCchhhhccccccccccHHHHHH------HHhhhh
Confidence 444221 1111222 999999999999999999999999999999999999999999999999 566666
Q ss_pred CcCCeeeccchhhhhhccccchhccccccccccccccccccccccCCCCceeEeecCCCCCCccCCCCcEEEEEEEEEEE
Q 002345 516 GALDIQCYPQNFFKKFSSYRFIHNVQQRKMGEKLLQANSINTLNAIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLV 595 (933)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~ 595 (933)
+..|.....-+-.-....... ... +...+++++| +||+.+.|+|+..+.
T Consensus 209 ~~y~~~~~~~~~vg~pp~~~e---------------~v~-------~~~qirIfs~---------t~g~~~qi~~~~~~~ 257 (404)
T KOG1045|consen 209 DRYDMYVVEHTGVGNPPKLVE---------------NVG-------LMPQIRIFSI---------TNGSYTQICYSEQSK 257 (404)
T ss_pred hcCcceEEeecccCCchhhhc---------------ccc-------ccceeEEEEe---------cCCcEEEEeeccccc
Confidence 666554443332222211111 111 5567899999 999999999999998
Q ss_pred Ee-Cchh--hHHhhcccceeEeecccccchhhHHhhhhccccCCccccccCCchh-hHhhhccccccccccccc------
Q 002345 596 IE-GETM--KELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE-LILAAADDSARTFSLLSS------ 665 (933)
Q Consensus 596 ~~-g~~~--~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~r~lP~~d-lilAAa~Ds~~dl~~Ls~------ 665 (933)
.. |+|. +...|+++++||.++.+-|+.|++..|+||.+|.-++|.+..++.+ ++++.........+.+..
T Consensus 258 ~~~~~~~f~~s~~es~e~~e~~v~~~~~~q~~~~~v~q~~~g~k~~f~~s~~~~~~l~~~~~~~~~~~~s~l~~v~~~~~ 337 (404)
T KOG1045|consen 258 VNADKHKFGKSRKESNEEIEKLVGRFEMNQHLEPEVQQMLVGYKAQFGASQPAAERLQVTLNTPTPCELSVLEEVGHLKE 337 (404)
T ss_pred CCcchhccccCchHHhhhhhhhhccccccccccHHHHHHHHHHHHHhhcCcccccceeeeccCCcccccchhhhhccchh
Confidence 76 3332 3355699999999999999999999999999999999998888543 333322222222221111
Q ss_pred -----------hhhhhhcccCCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhc
Q 002345 666 -----------KDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLD 714 (933)
Q Consensus 666 -----------eer~e~~~F~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr 714 (933)
+.+++-..+.++...+|..+...+.......++|+.|||.|........
T Consensus 338 ~i~ll~~~~~~~~~~el~~~~~~~~~~~~~~~~k~s~~ssa~~~l~~~~~s~v~~d~~~d 397 (404)
T KOG1045|consen 338 RIGLLLVAGNLEKEIELDFLKPSLKKQRLEYALKHSRSSSADTLLLFSCGSGVLFDLTLD 397 (404)
T ss_pred ccccceeccCcceeeehhhccchhhhhchhhHhhhhHHhhhhhhhhhccccceehhhccC
Confidence 1455666688899999999999998877889999999999988765443
No 2
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.74 E-value=4.6e-18 Score=179.00 Aligned_cols=161 Identities=24% Similarity=0.298 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHhhc---CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002345 679 SKQRVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 755 (933)
Q Consensus 679 y~qRve~Ild~L~~---~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~ 755 (933)
..-|..++.+.+.. ..+.+|||||||-|.++..||+.| ..|+|+|+++++|+.|+.+.. ..
T Consensus 41 N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~-------------e~ 104 (243)
T COG2227 41 NPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHAL-------------ES 104 (243)
T ss_pred ccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhh-------------hc
Confidence 44566777776654 578999999999999999999998 799999999999999976532 23
Q ss_pred CccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCC
Q 002345 756 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDP 834 (933)
Q Consensus 756 ~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYp 834 (933)
..++++.+..++++....++||+|+|.+||||++ ++.. |.+.+.+++||| .++++|+|..+..++.... ++ +|
T Consensus 105 gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~-dp~~-~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~--~a-e~- 178 (243)
T COG2227 105 GVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP-DPES-FLRACAKLVKPGGILFLSTINRTLKAYLLAII--GA-EY- 178 (243)
T ss_pred cccccchhhhHHHHHhcCCCccEEEEhhHHHccC-CHHH-HHHHHHHHcCCCcEEEEeccccCHHHHHHHHH--HH-HH-
Confidence 3458899999999887778999999999999999 5544 555699999999 9999999998877765542 11 22
Q ss_pred cchhhhccccccCCCcccccCHHHHHHHHHH
Q 002345 835 DEKTQLQSCKFRNHDHKFEWTRDQFNCWATE 865 (933)
Q Consensus 835 dEp~g~~~~~fRh~DHkFeWTreEF~~Was~ 865 (933)
. ..|.+...|+...+..++|+..|+.+
T Consensus 179 ---v-l~~vP~gTH~~~k~irp~El~~~~~~ 205 (243)
T COG2227 179 ---V-LRIVPKGTHDYRKFIKPAELIRWLLG 205 (243)
T ss_pred ---H-HHhcCCcchhHHHhcCHHHHHHhccc
Confidence 2 24788888899999999999998764
No 3
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.71 E-value=2.9e-16 Score=172.86 Aligned_cols=162 Identities=20% Similarity=0.194 Sum_probs=121.0
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
.+.+|||||||+|.++..|++.+ .+|+|||++++|++.|+++... .....+++++++|++++++..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~-----------~~~~~~i~~~~~dae~l~~~~ 196 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADM-----------DPVTSTIEYLCTTAEKLADEG 196 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHh-----------cCcccceeEEecCHHHhhhcc
Confidence 45699999999999999999876 6899999999999999876431 112247999999999988777
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhccccccCCCccc
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKF 852 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~~~fRh~DHkF 852 (933)
+.||+|+|.+||||++ ++...+ +++.++|||| .++|+++|.....++.... + .+|. ..|.+...+.+..
T Consensus 197 ~~FD~Vi~~~vLeHv~-d~~~~L-~~l~r~LkPGG~liist~nr~~~~~~~~i~--~-~eyi-----~~~lp~gth~~~~ 266 (322)
T PLN02396 197 RKFDAVLSLEVIEHVA-NPAEFC-KSLSALTIPNGATVLSTINRTMRAYASTIV--G-AEYI-----LRWLPKGTHQWSS 266 (322)
T ss_pred CCCCEEEEhhHHHhcC-CHHHHH-HHHHHHcCCCcEEEEEECCcCHHHHHHhhh--h-HHHH-----HhcCCCCCcCccC
Confidence 8999999999999999 554444 5699999999 9999999987655443321 0 1121 1234444444555
Q ss_pred ccCHHHHHHHHHHHHHHcCcEE-EEEeecCCC
Q 002345 853 EWTRDQFNCWATELAARHNYSV-EFSGVGGSG 883 (933)
Q Consensus 853 eWTreEF~~Was~LA~r~GYsV-EF~GVG~~p 883 (933)
.++++++.. ++++.|+.+ +..|+-..|
T Consensus 267 f~tp~eL~~----lL~~aGf~i~~~~G~~~~p 294 (322)
T PLN02396 267 FVTPEELSM----ILQRASVDVKEMAGFVYNP 294 (322)
T ss_pred CCCHHHHHH----HHHHcCCeEEEEeeeEEcC
Confidence 689999994 667789877 556665543
No 4
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.61 E-value=1.6e-15 Score=161.26 Aligned_cols=167 Identities=17% Similarity=0.261 Sum_probs=122.3
Q ss_pred chHHHHHHHHHHHhhcC-----C------CCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhc
Q 002345 677 PLSKQRVEYALQHIKES-----C------ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK 745 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~-----~------g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~ 745 (933)
.+...|+.++.+.+... + +.+|||+|||.|.++..|++.| ++|+|||++++|++.|++... .+.
T Consensus 61 ~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~--~dP 135 (282)
T KOG1270|consen 61 SMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKK--MDP 135 (282)
T ss_pred hccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhh--cCc
Confidence 45566777777665321 2 3679999999999999999999 899999999999999987622 211
Q ss_pred ccccCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHh
Q 002345 746 KLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQK 824 (933)
Q Consensus 746 ~~~~~~Pr~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~ 824 (933)
. .-..-.-++++.+.|++... +.||+|+|++|+||+. ++...+ +.+.++|||+ .++|+|.|....+++..
T Consensus 136 ~----~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~-dp~~~l-~~l~~~lkP~G~lfittinrt~lS~~~~ 206 (282)
T KOG1270|consen 136 V----LEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVK-DPQEFL-NCLSALLKPNGRLFITTINRTILSFAGT 206 (282)
T ss_pred h----hccccceeeehhhcchhhcc---cccceeeeHHHHHHHh-CHHHHH-HHHHHHhCCCCceEeeehhhhHHHhhcc
Confidence 0 00011124778888887764 3499999999999998 554444 5699999999 99999999987776655
Q ss_pred hccCcCCCCCcchhhhccccccCCCcccccCHHHHHHHHHH
Q 002345 825 SSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATE 865 (933)
Q Consensus 825 l~~~g~~eYpdEp~g~~~~~fRh~DHkFeWTreEF~~Was~ 865 (933)
+. +.|- -..+.+.+.|.+..+.+++++..|...
T Consensus 207 i~-------~~E~-vl~ivp~Gth~~ekfi~p~e~~~~l~~ 239 (282)
T KOG1270|consen 207 IF-------LAEI-VLRIVPKGTHTWEKFINPEELTSILNA 239 (282)
T ss_pred cc-------HHHH-HHHhcCCCCcCHHHcCCHHHHHHHHHh
Confidence 42 2222 223666777777778999999987653
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=7.6e-15 Score=155.67 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 678 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 678 Ly~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
++....+.+.+.+...++.+|||||||||.++..+++..+ ..+|+|+|+|+.||+.|++++.. .+..
T Consensus 35 ~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~------------~~~~ 101 (238)
T COG2226 35 LHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKK------------KGVQ 101 (238)
T ss_pred chHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhc------------cCcc
Confidence 3444445555666555899999999999999999998874 57999999999999999998752 2333
Q ss_pred cEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002345 758 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 811 (933)
Q Consensus 758 nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LII 811 (933)
+++|+++|++++|+++++||+|++...|++++ +...+|. +++|+|||| .+++
T Consensus 102 ~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~-d~~~aL~-E~~RVlKpgG~~~v 154 (238)
T COG2226 102 NVEFVVGDAENLPFPDNSFDAVTISFGLRNVT-DIDKALK-EMYRVLKPGGRLLV 154 (238)
T ss_pred ceEEEEechhhCCCCCCccCEEEeeehhhcCC-CHHHHHH-HHHHhhcCCeEEEE
Confidence 49999999999999999999999999999999 6656766 599999999 4433
No 6
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.58 E-value=1.7e-14 Score=138.44 Aligned_cols=135 Identities=23% Similarity=0.357 Sum_probs=99.4
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
..++.+|||||||.|.++..|++.+ .+++|+|+++.+++. . .+.....+....+.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~g~D~~~~~~~~--~--------------------~~~~~~~~~~~~~~ 74 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG---FEVTGVDISPQMIEK--R--------------------NVVFDNFDAQDPPF 74 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT---SEEEEEESSHHHHHH--T--------------------TSEEEEEECHTHHC
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHhh--h--------------------hhhhhhhhhhhhhc
Confidence 4577899999999999999999987 599999999999987 1 11222222224444
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch--hHHHHhhccCcCCCCCcchhhhccccccC-
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY--NAILQKSSSTIQEDDPDEKTQLQSCKFRN- 847 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ef--Ns~f~~l~~~g~~eYpdEp~g~~~~~fRh- 847 (933)
..+.||+|+|+.+|||++ ++...+. .+.++|||| .+++++|+... ...+.. |...+.
T Consensus 75 ~~~~fD~i~~~~~l~~~~-d~~~~l~-~l~~~LkpgG~l~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 135 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHLP-DPEEFLK-ELSRLLKPGGYLVISDPNRDDPSPRSFLK-----------------WRYDRPY 135 (161)
T ss_dssp HSSSEEEEEEESSGGGSS-HHHHHHH-HHHHCEEEEEEEEEEEEBTTSHHHHHHHH-----------------CCGTCHH
T ss_pred cccchhhHhhHHHHhhcc-cHHHHHH-HHHHhcCCCCEEEEEEcCCcchhhhHHHh-----------------cCCcCcc
Confidence 678999999999999999 5555554 699999999 99999998642 222222 111111
Q ss_pred CCcccccCHHHHHHHHHHHHHHcCcEE
Q 002345 848 HDHKFEWTRDQFNCWATELAARHNYSV 874 (933)
Q Consensus 848 ~DHkFeWTreEF~~Was~LA~r~GYsV 874 (933)
..|...++++++. .+++++|+++
T Consensus 136 ~~~~~~~~~~~~~----~ll~~~G~~i 158 (161)
T PF13489_consen 136 GGHVHFFSPDELR----QLLEQAGFEI 158 (161)
T ss_dssp TTTTEEBBHHHHH----HHHHHTTEEE
T ss_pred CceeccCCHHHHH----HHHHHCCCEE
Confidence 2667788999999 4678889876
No 7
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.58 E-value=7.8e-15 Score=154.88 Aligned_cols=113 Identities=20% Similarity=0.311 Sum_probs=80.4
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+.+.+...++.+|||+|||+|.++..+++..++..+|+|+|+|+.||+.|++++.. .+..+|+++++
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~------------~~~~~i~~v~~ 105 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR------------EGLQNIEFVQG 105 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH------------TT--SEEEEE-
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh------------hCCCCeeEEEc
Confidence 345566666788999999999999999988643447999999999999999988763 23448999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002345 765 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 811 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LII 811 (933)
|++++|+++++||+|+|...|++++ +....+. +++|+|||| .++|
T Consensus 106 da~~lp~~d~sfD~v~~~fglrn~~-d~~~~l~-E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 106 DAEDLPFPDNSFDAVTCSFGLRNFP-DRERALR-EMYRVLKPGGRLVI 151 (233)
T ss_dssp BTTB--S-TT-EEEEEEES-GGG-S-SHHHHHH-HHHHHEEEEEEEEE
T ss_pred CHHHhcCCCCceeEEEHHhhHHhhC-CHHHHHH-HHHHHcCCCeEEEE
Confidence 9999999999999999999999998 5556665 599999999 4444
No 8
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.57 E-value=7.3e-14 Score=147.64 Aligned_cols=171 Identities=16% Similarity=0.169 Sum_probs=114.5
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+++.+. ..+.+|||+|||+|.++..|++.+ .+|+|+|+|++|++.|++++.. .+...+++++++
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~-----------~g~~~~v~~~~~ 100 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEA-----------KGVSDNMQFIHC 100 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHh-----------cCCccceEEEEc
Confidence 3444444 356799999999999999999987 7999999999999999887652 122357899999
Q ss_pred CccccC-CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhcc
Q 002345 765 SITVFD-SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQS 842 (933)
Q Consensus 765 DaedLp-~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~ 842 (933)
|+.+++ ...+.||+|+|..+++|++ ++...+. ++.++|||| .+++..+|.+.. .+.... .+..++. ..+...
T Consensus 101 d~~~l~~~~~~~fD~V~~~~vl~~~~-~~~~~l~-~~~~~LkpgG~l~i~~~n~~~~-~~~~~~-~~~~~~~--~~~~~~ 174 (255)
T PRK11036 101 AAQDIAQHLETPVDLILFHAVLEWVA-DPKSVLQ-TLWSVLRPGGALSLMFYNANGL-LMHNMV-AGNFDYV--QAGMPK 174 (255)
T ss_pred CHHHHhhhcCCCCCEEEehhHHHhhC-CHHHHHH-HHHHHcCCCeEEEEEEECccHH-HHHHHH-ccChHHH--HhcCcc
Confidence 998764 4567899999999999998 5545555 599999999 777787876532 222111 0100000 000000
Q ss_pred ccccCCCcccccCHHHHHHHHHHHHHHcCcEEE-EEeec
Q 002345 843 CKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVG 880 (933)
Q Consensus 843 ~~fRh~DHkFeWTreEF~~Was~LA~r~GYsVE-F~GVG 880 (933)
...+.....+.++++++..|+ +..||.++ ..|++
T Consensus 175 ~~~~~~~p~~~~~~~~l~~~l----~~aGf~~~~~~gi~ 209 (255)
T PRK11036 175 RKKRTLSPDYPLDPEQVYQWL----EEAGWQIMGKTGVR 209 (255)
T ss_pred ccccCCCCCCCCCHHHHHHHH----HHCCCeEeeeeeEE
Confidence 000111123457999999764 56788773 55543
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.56 E-value=7.7e-14 Score=148.98 Aligned_cols=120 Identities=21% Similarity=0.177 Sum_probs=94.4
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+.+.+...++.+|||+|||+|.++..|++..++..+|+|+|+|++|++.|+++..... .....+++++++|
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~---------~~~~~~i~~~~~d 135 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKA---------KSCYKNIEWIEGD 135 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhh---------hccCCCeEEEEcc
Confidence 3445555578899999999999999888763233589999999999999987643110 1134579999999
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 766 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 766 aedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
++++++++++||+|++..++||++ ++...+. ++.++|||| .+++.+...
T Consensus 136 ~~~lp~~~~sfD~V~~~~~l~~~~-d~~~~l~-ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 136 ATDLPFDDCYFDAITMGYGLRNVV-DRLKAMQ-EMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred cccCCCCCCCEeEEEEecccccCC-CHHHHHH-HHHHHcCcCcEEEEEECCC
Confidence 999999889999999999999998 5555655 599999999 777766543
No 10
>PLN02244 tocopherol O-methyltransferase
Probab=99.53 E-value=7.5e-14 Score=154.35 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=89.8
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+|||||||+|.++..|++..+ .+|+|||+|+.|++.|+++... .....++++.++|+.++++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~-----------~g~~~~v~~~~~D~~~~~~~ 183 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAA-----------QGLSDKVSFQVADALNQPFE 183 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHh-----------cCCCCceEEEEcCcccCCCC
Confidence 4678999999999999999998642 6999999999999999887542 12234799999999999888
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
++.||+|++.++++|++ +....+ +++.++|||| .++|.+..
T Consensus 184 ~~~FD~V~s~~~~~h~~-d~~~~l-~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 184 DGQFDLVWSMESGEHMP-DKRKFV-QELARVAAPGGRIIIVTWC 225 (340)
T ss_pred CCCccEEEECCchhccC-CHHHHH-HHHHHHcCCCcEEEEEEec
Confidence 89999999999999998 554555 4699999999 77776654
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.53 E-value=1.2e-13 Score=126.17 Aligned_cols=106 Identities=25% Similarity=0.331 Sum_probs=82.7
Q ss_pred CCCEEEEEcCCcChHHHHHhc--CCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc-cccC
Q 002345 694 CATTLVDFGCGSGSLLDSLLD--YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI-TVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr--~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDa-edLp 770 (933)
++.+|||||||+|.++..+++ .+ .+|+|||+|++|++.|++++.. .....+++++++|+ ....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~-----------~~~~~~i~~~~~d~~~~~~ 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPG---ARVVGVDISPEMLEIARERAAE-----------EGLSDRITFVQGDAEFDPD 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTT---SEEEEEESSHHHHHHHHHHHHH-----------TTTTTTEEEEESCCHGGTT
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCC---CEEEEEeCCHHHHHHHHHHHHh-----------cCCCCCeEEEECccccCcc
Confidence 467999999999999999999 44 7899999999999999998732 22456899999999 3333
Q ss_pred CCCCCccEEEEcc-ccccCCh-hHHHHHHHHHHHccCCC-EEEEEec
Q 002345 771 SRLHGFDIGTCLE-VIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 771 ~~~~sFDlVVc~e-VLEHLpd-D~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
....||+|++.. .++++.. ++...+.+.+.+.|+|| .++|+++
T Consensus 67 -~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 67 -FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp -TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred -cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 345799999999 6665553 34445556799999999 7777653
No 12
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.52 E-value=6.3e-14 Score=122.62 Aligned_cols=94 Identities=23% Similarity=0.430 Sum_probs=76.7
Q ss_pred EEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCccE
Q 002345 699 VDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDI 778 (933)
Q Consensus 699 LDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~sFDl 778 (933)
||+|||+|.++..|++.+ ..+|+|+|+++++++.++++.. ..++.+.++|++++++++++||+
T Consensus 1 LdiG~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~~~~~~~---------------~~~~~~~~~d~~~l~~~~~sfD~ 63 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG--GASVTGIDISEEMLEQARKRLK---------------NEGVSFRQGDAEDLPFPDNSFDV 63 (95)
T ss_dssp EEET-TTSHHHHHHHHTT--TCEEEEEES-HHHHHHHHHHTT---------------TSTEEEEESBTTSSSS-TT-EEE
T ss_pred CEecCcCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHhccc---------------ccCchheeehHHhCccccccccc
Confidence 899999999999999993 2899999999999999988643 23566999999999999999999
Q ss_pred EEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002345 779 GTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 811 (933)
Q Consensus 779 VVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LII 811 (933)
|++..++||++ +....+. ++.|+|||| .++|
T Consensus 64 v~~~~~~~~~~-~~~~~l~-e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 64 VFSNSVLHHLE-DPEAALR-EIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEESHGGGSS-HHHHHHH-HHHHHEEEEEEEEE
T ss_pred cccccceeecc-CHHHHHH-HHHHHcCcCeEEeC
Confidence 99999999994 6555555 599999999 5543
No 13
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.51 E-value=6.3e-13 Score=137.08 Aligned_cols=157 Identities=15% Similarity=0.192 Sum_probs=110.9
Q ss_pred HHHHhh--cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 686 ALQHIK--ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 686 Ild~L~--~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+++.+. ..++.+|||+|||+|.++..+++.+ .+|+|+|+|++|++.|++++... ....++.+.+
T Consensus 45 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~-----------~~~~~i~~~~ 110 (219)
T TIGR02021 45 LLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGR-----------DVAGNVEFEV 110 (219)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhc-----------CCCCceEEEE
Confidence 444444 3467899999999999999999876 68999999999999999876421 1124799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCcCCCCCcchhhhccc
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSC 843 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~~ 843 (933)
+|+.+++ .+||+|++..+++|++++....+.+.+.++++++.++...|...+...+..+. ..+.
T Consensus 111 ~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~-------------~~~~ 174 (219)
T TIGR02021 111 NDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIG-------------ELFP 174 (219)
T ss_pred CChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHH-------------hhCc
Confidence 9998875 68999999999999986555555666888898875555555443333222210 0112
Q ss_pred cccCCCcccccCHHHHHHHHHHHHHHcCcEEEE
Q 002345 844 KFRNHDHKFEWTRDQFNCWATELAARHNYSVEF 876 (933)
Q Consensus 844 ~fRh~DHkFeWTreEF~~Was~LA~r~GYsVEF 876 (933)
..+...+.+.++++++. .++...||.+.-
T Consensus 175 ~~~~~~~~~~~~~~~~~----~~l~~~Gf~v~~ 203 (219)
T TIGR02021 175 GSSRATSAYLHPMTDLE----RALGELGWKIVR 203 (219)
T ss_pred CcccccceEEecHHHHH----HHHHHcCceeee
Confidence 22223445567889888 466778988844
No 14
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.51 E-value=2.4e-13 Score=145.36 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=104.4
Q ss_pred hhhhhcccCCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcc
Q 002345 667 DRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK 746 (933)
Q Consensus 667 er~e~~~F~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~ 746 (933)
+++-...|..|...+....+++.+...++.+|||||||+|..+..|++..+ .+|+|+|+|+.|++.|+++..
T Consensus 25 e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~------ 96 (263)
T PTZ00098 25 EFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNS------ 96 (263)
T ss_pred HHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcC------
Confidence 344444455555555566677777777889999999999999998876532 689999999999999987642
Q ss_pred cccCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 747 LDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 747 ~~~~~Pr~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
...++.+..+|+.+.++++++||+|++..+++|++.+....+.++++++|||| .++++.+.
T Consensus 97 --------~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 97 --------DKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred --------cCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 12479999999998888888999999999999998534455556799999999 77777654
No 15
>KOG1045 consensus Uncharacterized conserved protein HEN1/CORYMBOSA2 [Function unknown]
Probab=99.50 E-value=7.2e-15 Score=162.77 Aligned_cols=241 Identities=24% Similarity=0.345 Sum_probs=178.2
Q ss_pred hhhhhcccCCchHHHHHH-HHHHHhhcCCCCEEEEEcCCcCh--HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhh
Q 002345 667 DRMEQALFSPPLSKQRVE-YALQHIKESCATTLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKL 743 (933)
Q Consensus 667 er~e~~~F~PPLy~qRve-~Ild~L~~~~g~rVLDIGCGtG~--fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~l 743 (933)
.++..+.|.||++.+|.. .........+.+.+.|+|||.-. ....+.... ......|+|+++..+.+.....+..+
T Consensus 20 ~~~~~~~~~~~l~~~r~r~~fk~~qd~~~~~~~a~~g~~w~~~s~n~~~k~s~-~~~~~agl~f~~~k~~~r~~~~~~~l 98 (404)
T KOG1045|consen 20 ALLTPIDFSPPLAKQRARASFKNLQDIHGDKILADVGCGWRGSSYNGIYKESR-TIEILAGLDFNETKSVWRGPSVRPIL 98 (404)
T ss_pred ccccccccccHHHHHhhhhhhhcccCCCcchhhhhcCCcccccccccccccch-hhHHHcCCCchhhhhhhcCcchhHHH
Confidence 344677799999999933 33333455667889999999842 222222221 23567899999885555433222222
Q ss_pred hcccccCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHH
Q 002345 744 SKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQ 823 (933)
Q Consensus 744 s~~~~~~~Pr~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~efNs~f~ 823 (933)
. +...++.....|..+.|...+.......+|.+++++.++|+..++...+.+.+++.+.|-.++++|||..||..+.
T Consensus 99 ~---dF~r~r~l~l~I~~~~G~~v~s~s~i~~~d~v~~~e~ieh~ds~~~~~ip~~vfG~~~p~~iv~stpn~~~N~~~~ 175 (404)
T KOG1045|consen 99 G---DFLRSRQLPLPILLLSGNVVDSLSKILRSDAVLAIELIEHVDSEPLLSIPELVFGFLCPVKIVKSTPNLVFNCIFR 175 (404)
T ss_pred H---HHhhhhcCCcceeeecCCccccHHHHHhhhhhhhhhhhhcccchhhhccchhhcccccceEEEEeCCCccccchhh
Confidence 1 1122355667899999998876655678999999999999999999999999999999999999999999999888
Q ss_pred hhccCcCCCCCcchhhhcccccc-CCCcccccCHHHHHHHHHHHHHHcC-cEEEEEeecCCCCC--CCCccceeEEEecC
Q 002345 824 KSSSTIQEDDPDEKTQLQSCKFR-NHDHKFEWTRDQFNCWATELAARHN-YSVEFSGVGGSGDR--EPGFASQIAVFRSR 899 (933)
Q Consensus 824 ~l~~~g~~eYpdEp~g~~~~~fR-h~DHkFeWTreEF~~Was~LA~r~G-YsVEF~GVG~~p~~--~~Gf~TQIAVF~R~ 899 (933)
+.. +.. ...++ |.+|+|+|++.+|+.|+-.+..+|. |.+++.|+|..+.. ..|+..||+||.++
T Consensus 176 kf~-------~l~-----p~~~~~~s~h~feW~r~eFa~w~~~vd~~y~~~~~~~~~vg~pp~~~e~v~~~~qirIfs~t 243 (404)
T KOG1045|consen 176 KFN-------TLL-----PSAIRRHSDHKFEWPRKEFADWALYVDDRYDMYVVEHTGVGNPPKLVENVGLMPQIRIFSIT 243 (404)
T ss_pred hhc-------ccC-----chhhhccccccccccHHHHHHHHhhhhhcCcceEEeecccCCchhhhccccccceeEEEEec
Confidence 753 222 23444 8999999999999999999999996 56678889987653 67889999999999
Q ss_pred CCCCCcccccCCCCcCceeEEEEe
Q 002345 900 TPPEEDDLLKDGDSAHHYKVIWEW 923 (933)
Q Consensus 900 ~~~~~~~~~~~~~~~~~Yk~v~~w 923 (933)
.+..+.....++-.-.+++.....
T Consensus 244 ~g~~~qi~~~~~~~~~~~~~~f~~ 267 (404)
T KOG1045|consen 244 NGSYTQICYSEQSKVNADKHKFGK 267 (404)
T ss_pred CCcEEEEeecccccCCcchhcccc
Confidence 998888776666555666655443
No 16
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.50 E-value=3.9e-13 Score=142.01 Aligned_cols=107 Identities=19% Similarity=0.242 Sum_probs=87.3
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+++.+...++.+|||||||+|.++..|++.. +..+|+|+|+|+.|++.|+++ ++++.++|
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~~d 80 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------------------GVDARTGD 80 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------------------CCcEEEcC
Confidence 4555655677899999999999999999874 236899999999999999541 47889999
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 766 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 766 aedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+.++. ..+.||+|+|..++||++ ++...+. +++++|||| .+++.+|+
T Consensus 81 ~~~~~-~~~~fD~v~~~~~l~~~~-d~~~~l~-~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 81 VRDWK-PKPDTDVVVSNAALQWVP-EHADLLV-RWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hhhCC-CCCCceEEEEehhhhhCC-CHHHHHH-HHHHhCCCCcEEEEEcCC
Confidence 98774 457899999999999998 5555555 599999999 77777765
No 17
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.49 E-value=6.4e-13 Score=139.51 Aligned_cols=118 Identities=17% Similarity=0.246 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 678 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 678 Ly~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
++....+.+++.+......+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.|+++..
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~----------------- 85 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDA----------------- 85 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC-----------------
Confidence 344444556666665567899999999999999998876 799999999999999976521
Q ss_pred cEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 758 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 758 nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
...++++|++++++.+.+||+|+++.+++|++ +....+. ++.++|+|| .++++++...
T Consensus 86 ~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~-d~~~~l~-~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 86 ADHYLAGDIESLPLATATFDLAWSNLAVQWCG-NLSTALR-ELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred CCCEEEcCcccCcCCCCcEEEEEECchhhhcC-CHHHHHH-HHHHHcCCCeEEEEEeCCCC
Confidence 24688999999888888999999999999998 5555655 599999999 8888887754
No 18
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.49 E-value=3.1e-13 Score=138.44 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=91.3
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+++.+...++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.|+++... .+..++++..+|
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~------------~~~~~v~~~~~d 86 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAA------------ENLDNLHTAVVD 86 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHH------------cCCCcceEEecC
Confidence 3455555567899999999999999999987 6999999999999999876542 233468899999
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EE-EEEec
Q 002345 766 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-IL-IVSTP 814 (933)
Q Consensus 766 aedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~L-IITTP 814 (933)
+.++++. ..||+|+|..++||++++....+.+.+.++|+|| .+ ++...
T Consensus 87 ~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 87 LNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred hhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 9877653 5799999999999998766777777899999999 43 34443
No 19
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.48 E-value=2.5e-13 Score=132.42 Aligned_cols=106 Identities=30% Similarity=0.506 Sum_probs=87.0
Q ss_pred CCCEEEEEcCCcChHHHHHh-cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--
Q 002345 694 CATTLVDFGCGSGSLLDSLL-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LA-r~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp-- 770 (933)
++.+|||+|||+|.++..|+ +.+ +..+++|+|+|++|++.|++++.. .+..+++|+++|+.+++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~-~~~~i~gvD~s~~~i~~a~~~~~~------------~~~~ni~~~~~d~~~l~~~ 69 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELN-PGAKIIGVDISEEMIEYAKKRAKE------------LGLDNIEFIQGDIEDLPQE 69 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHST-TTSEEEEEESSHHHHHHHHHHHHH------------TTSTTEEEEESBTTCGCGC
T ss_pred CCCEEEEecCcCcHHHHHHHHhcC-CCCEEEEEECcHHHHHHhhccccc------------ccccccceEEeehhccccc
Confidence 56799999999999999999 443 247899999999999999987652 34558999999999976
Q ss_pred CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 771 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+. ..||+|++..+++|+. +....+. .+.++|++| .+++..++
T Consensus 70 ~~-~~~D~I~~~~~l~~~~-~~~~~l~-~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 70 LE-EKFDIIISNGVLHHFP-DPEKVLK-NIIRLLKPGGILIISDPN 112 (152)
T ss_dssp SS-TTEEEEEEESTGGGTS-HHHHHHH-HHHHHEEEEEEEEEEEEE
T ss_pred cC-CCeeEEEEcCchhhcc-CHHHHHH-HHHHHcCCCcEEEEEECC
Confidence 33 7999999999999998 5545554 699999999 77777776
No 20
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.48 E-value=1.7e-12 Score=142.88 Aligned_cols=169 Identities=21% Similarity=0.248 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhhc---CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002345 680 KQRVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756 (933)
Q Consensus 680 ~qRve~Ild~L~~---~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~ 756 (933)
.+.++.+++.+.. .++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|++++..... .....
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~-------~~~~~ 196 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALA-------ALPPE 196 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhccc-------ccccc
Confidence 3444555666643 256799999999999999999987 6899999999999999987652110 00123
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe-cCCchhHHHHhhccCcCCCCCc
Q 002345 757 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST-PNYEYNAILQKSSSTIQEDDPD 835 (933)
Q Consensus 757 ~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITT-PN~efNs~f~~l~~~g~~eYpd 835 (933)
.++.|..+|+.++ .+.||+|+|..+++|++++....+.+.+.+ +.+|.++|+. |+..+...+...
T Consensus 197 ~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~---------- 262 (315)
T PLN02585 197 VLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRI---------- 262 (315)
T ss_pred cceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHH----------
Confidence 4688999998664 468999999999999987666666654554 5667555554 443222222221
Q ss_pred chhhhccccccCCCcccccCHHHHHHHHHHHHHHcCcEEEEEee
Q 002345 836 EKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGV 879 (933)
Q Consensus 836 Ep~g~~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsVEF~GV 879 (933)
+..+.+.......+.++++++. .+.+..||.|....+
T Consensus 263 ---g~~~~g~~~~~r~y~~s~eel~----~lL~~AGf~v~~~~~ 299 (315)
T PLN02585 263 ---GELFPGPSKATRAYLHAEADVE----RALKKAGWKVARREM 299 (315)
T ss_pred ---HhhcCCCCcCceeeeCCHHHHH----HHHHHCCCEEEEEEE
Confidence 1112222112223456899999 467778999866444
No 21
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.46 E-value=9.7e-13 Score=135.92 Aligned_cols=117 Identities=15% Similarity=0.223 Sum_probs=93.8
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+.++..+...++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++.. .+..++++++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~------------~~~~~v~~~~ 102 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD------------AGLHNVELVH 102 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh------------cCCCceEEEE
Confidence 4456666666788999999999999999987632336899999999999999887642 2345799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+|+.+++++.++||+|++..+++|++ +....+ +++.++|+|| .+++.++
T Consensus 103 ~d~~~~~~~~~~fD~V~~~~~l~~~~-~~~~~l-~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 103 GNAMELPFDDNSFDYVTIGFGLRNVP-DYMQVL-REMYRVVKPGGKVVCLET 152 (231)
T ss_pred echhcCCCCCCCccEEEEecccccCC-CHHHHH-HHHHHHcCcCeEEEEEEC
Confidence 99998887778999999999999998 554555 4699999999 5555444
No 22
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.46 E-value=8.4e-13 Score=145.42 Aligned_cols=116 Identities=22% Similarity=0.302 Sum_probs=92.1
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
.+.+...+....+.+|||||||+|.++..+++.+. ..|+|+|+|+.|+..++...+. .....++.+.
T Consensus 111 ~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~-----------~~~~~~i~~~ 177 (322)
T PRK15068 111 WDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKL-----------LGNDQRAHLL 177 (322)
T ss_pred HHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHh-----------cCCCCCeEEE
Confidence 34456666666789999999999999999998873 5799999999999776433210 0123479999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 763 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 763 ~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
.+|+++++. ...||+|+|..+++|+. ++...|. ++++.|+|| .+++.+.
T Consensus 178 ~~d~e~lp~-~~~FD~V~s~~vl~H~~-dp~~~L~-~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 178 PLGIEQLPA-LKAFDTVFSMGVLYHRR-SPLDHLK-QLKDQLVPGGELVLETL 227 (322)
T ss_pred eCCHHHCCC-cCCcCEEEECChhhccC-CHHHHHH-HHHHhcCCCcEEEEEEE
Confidence 999999987 78899999999999998 6656665 599999999 7777764
No 23
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.44 E-value=2.3e-12 Score=131.89 Aligned_cols=110 Identities=13% Similarity=0.112 Sum_probs=87.7
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+.+.+....+.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.++++... .+. ++.+..+
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~------------~~~-~v~~~~~ 84 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKAR------------ENL-PLRTDAY 84 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHH------------hCC-CceeEec
Confidence 45556666667899999999999999999987 6999999999999999876542 122 3777888
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002345 765 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 811 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LII 811 (933)
|+...+.. .+||+|++..+++|++.+....+.+++.++|+|| .+++
T Consensus 85 d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 85 DINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred cchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 87665543 5799999999999998666667777899999999 4344
No 24
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.43 E-value=1.1e-12 Score=141.80 Aligned_cols=119 Identities=16% Similarity=0.232 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002345 679 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 758 (933)
Q Consensus 679 y~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~n 758 (933)
....++.+++.+...++.+|||||||.|.++..+++..+ .+|+||++|++..+.|++++.. .+....
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~-----------~gl~~~ 113 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIRE-----------AGLEDR 113 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHC-----------STSSST
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHh-----------cCCCCc
Confidence 344567788888888999999999999999999999832 7999999999999999988763 223457
Q ss_pred EEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 759 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 759 Vefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
+++..+|..+++. .||.|++++++||+.......|.+.+.++|+|| .+++.+
T Consensus 114 v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 114 VEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp EEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred eEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999999987754 999999999999998666667777899999999 665543
No 25
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.42 E-value=2.7e-13 Score=123.57 Aligned_cols=97 Identities=23% Similarity=0.371 Sum_probs=79.1
Q ss_pred EEEEcCCcChHHHHHhcCC--CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCC
Q 002345 698 LVDFGCGSGSLLDSLLDYP--TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHG 775 (933)
Q Consensus 698 VLDIGCGtG~fL~~LAr~g--~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~s 775 (933)
|||+|||+|..+..+++.. ++..+++|+|+|++||+.++++... ...+++++++|+.+++...+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-------------~~~~~~~~~~D~~~l~~~~~~ 67 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE-------------DGPKVRFVQADARDLPFSDGK 67 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH-------------TTTTSEEEESCTTCHHHHSSS
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh-------------cCCceEEEECCHhHCcccCCC
Confidence 7999999999999998763 1226999999999999999887542 123889999999999888889
Q ss_pred ccEEEEc-cccccCChhHHHHHHHHHHHccCCC
Q 002345 776 FDIGTCL-EVIEHMEEDEASQFGNIVLSSFRPR 807 (933)
Q Consensus 776 FDlVVc~-eVLEHLpdD~l~aL~eeI~rlLKPG 807 (933)
||+|+|. .+++|+.+++...+.+.+.++|+||
T Consensus 68 ~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 68 FDLVVCSGLSLHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp EEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred eeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCC
Confidence 9999995 5699999888888888999999997
No 26
>PRK06202 hypothetical protein; Provisional
Probab=99.42 E-value=3.6e-12 Score=132.73 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCcChHHHHHhcC----CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDY----PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 768 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~----g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaed 768 (933)
.++.+|||||||+|.++..|++. + +..+|+|+|+|++|++.|+++.. ..++.+..++...
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g-~~~~v~gvD~s~~~l~~a~~~~~---------------~~~~~~~~~~~~~ 122 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDG-LRLEVTAIDPDPRAVAFARANPR---------------RPGVTFRQAVSDE 122 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCC-CCcEEEEEcCCHHHHHHHHhccc---------------cCCCeEEEEeccc
Confidence 46679999999999998888752 2 22589999999999999976532 1246666777666
Q ss_pred cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002345 769 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 817 (933)
Q Consensus 769 Lp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~e 817 (933)
++..+++||+|+|+.++||+++++...+.+++.++++ |.+++......
T Consensus 123 l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl~~~ 170 (232)
T PRK06202 123 LVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHNDLIRS 170 (232)
T ss_pred ccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEeccccC
Confidence 6666779999999999999996655566667999998 66666666654
No 27
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.41 E-value=3.7e-12 Score=137.50 Aligned_cols=105 Identities=16% Similarity=0.150 Sum_probs=86.6
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+|||+|||+|.++..|++.+ .+|+|+|+|+.+++.+++++.. .+. ++++..+|+...+.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~------------~~l-~v~~~~~D~~~~~~- 181 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEK------------ENL-NIRTGLYDINSASI- 181 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHH------------cCC-ceEEEEechhcccc-
Confidence 455699999999999999999987 6999999999999999877542 223 78888889877654
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
.++||+|++..+++|++++....+.+++.++|+|| .+++..+
T Consensus 182 ~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 182 QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 57899999999999998766777778899999999 5455443
No 28
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.41 E-value=1.2e-11 Score=126.95 Aligned_cols=175 Identities=21% Similarity=0.332 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHHhhc----CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002345 678 LSKQRVEYALQHIKE----SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 753 (933)
Q Consensus 678 Ly~qRve~Ild~L~~----~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr 753 (933)
+...|++++.+.+.. ..+.+|||+|||+|.++..+++.+ .+++|+|+++.+++.+++++..
T Consensus 25 ~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~------------ 89 (224)
T TIGR01983 25 MNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKK------------ 89 (224)
T ss_pred hhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHH------------
Confidence 345677888877763 347899999999999999998876 5799999999999999887642
Q ss_pred CCCccEEEEEcCccccCCC-CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCC
Q 002345 754 TDVKSAVLFDGSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQE 831 (933)
Q Consensus 754 ~~~~nVefi~GDaedLp~~-~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~ 831 (933)
....++.+..+|+.+.+.. .+.||+|++..+++|+. ++...+ +.+.++|+|| .+++++++..+...+.... ..
T Consensus 90 ~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~-~~~~~l-~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~---~~ 164 (224)
T TIGR01983 90 DPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVP-DPQAFI-RACAQLLKPGGILFFSTINRTPKSYLLAIV---GA 164 (224)
T ss_pred cCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCC-CHHHHH-HHHHHhcCCCcEEEEEecCCCchHHHHHHH---hh
Confidence 1222688999998876544 37899999999999998 554444 5699999999 8888888876544433211 00
Q ss_pred CCCcchhhhccccccCCCcccccCHHHHHHHHHHHHHHcCcEE-EEEeecC
Q 002345 832 DDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV-EFSGVGG 881 (933)
Q Consensus 832 eYpdEp~g~~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsV-EF~GVG~ 881 (933)
++. ..+.+.....+....++.++..| +...|+++ +..+++.
T Consensus 165 ~~~-----~~~~~~~~~~~~~~~~~~~l~~~----l~~~G~~i~~~~~~~~ 206 (224)
T TIGR01983 165 EYI-----LRIVPKGTHDWEKFIKPSELTSW----LESAGLRVKDVKGLVY 206 (224)
T ss_pred hhh-----hhcCCCCcCChhhcCCHHHHHHH----HHHcCCeeeeeeeEEe
Confidence 110 01122222233445688888854 45678877 4444444
No 29
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.41 E-value=2.9e-12 Score=135.40 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=96.2
Q ss_pred cCCchHHHHHHHHHHHhh--cCCCCEEEEEcCCcChHHHHHhcCC-CCCceEEEEeCChHHHHHHHHHHhhhhhcccccC
Q 002345 674 FSPPLSKQRVEYALQHIK--ESCATTLVDFGCGSGSLLDSLLDYP-TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA 750 (933)
Q Consensus 674 F~PPLy~qRve~Ild~L~--~~~g~rVLDIGCGtG~fL~~LAr~g-~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~ 750 (933)
..-|.|..-+..+...+. ..++.+|||||||+|.++..+++.. .+..+|+|+|+|+.|++.|++++...
T Consensus 34 ~~~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~-------- 105 (247)
T PRK15451 34 RSVPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-------- 105 (247)
T ss_pred hcCCChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--------
Confidence 334666655555444332 2366899999999999998887621 12379999999999999999887521
Q ss_pred CCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 751 VPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 751 ~Pr~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
....+++++++|+.+++. ..+|+|+++.++||++++....+.+++++.|+|| .++++..
T Consensus 106 ---~~~~~v~~~~~d~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 106 ---KAPTPVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred ---CCCCCeEEEeCChhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 123479999999988765 3599999999999998666666677899999999 7777653
No 30
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.40 E-value=3.7e-12 Score=133.18 Aligned_cols=126 Identities=14% Similarity=0.165 Sum_probs=95.2
Q ss_pred chHHHHHHHHHHHhh--cCCCCEEEEEcCCcChHHHHHhcCC-CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002345 677 PLSKQRVEYALQHIK--ESCATTLVDFGCGSGSLLDSLLDYP-TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 753 (933)
Q Consensus 677 PLy~qRve~Ild~L~--~~~g~rVLDIGCGtG~fL~~LAr~g-~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr 753 (933)
|.|...+..+..... ..++.+|||||||+|.++..+++.. .+..+++|+|+|+.|++.|++++...
T Consensus 34 p~y~~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~----------- 102 (239)
T TIGR00740 34 PGYSNIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY----------- 102 (239)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----------
Confidence 445555555444322 1356799999999999999888752 12378999999999999999876521
Q ss_pred CCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 754 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 754 ~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
....+++++++|+.++++. .+|+|++..++||+++++...+.+++.++|+|| .++++.+.
T Consensus 103 ~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 103 HSEIPVEILCNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred CCCCCeEEEECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 1234789999999987654 589999999999998665566667799999999 77777653
No 31
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.40 E-value=1e-11 Score=126.31 Aligned_cols=157 Identities=20% Similarity=0.250 Sum_probs=104.0
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+.+.+.+. ++.+|||||||+|.++..+++... ..++|+|+++++++.|+++ ++++++
T Consensus 5 ~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~-------------------~~~~~~ 61 (194)
T TIGR02081 5 ESILNLIP--PGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVAR-------------------GVNVIQ 61 (194)
T ss_pred HHHHHhcC--CCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHc-------------------CCeEEE
Confidence 34445543 567999999999999999976542 5789999999999988531 367888
Q ss_pred cCccc-c-CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCcCCCCCcchhhhc
Q 002345 764 GSITV-F-DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQ 841 (933)
Q Consensus 764 GDaed-L-p~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~ 841 (933)
+|+.+ + ++.+++||+|+|..++||++ ++...+. ++.+.++ .++++.||..+..........+. .+.. +..
T Consensus 62 ~d~~~~l~~~~~~sfD~Vi~~~~l~~~~-d~~~~l~-e~~r~~~--~~ii~~p~~~~~~~~~~~~~~~~--~~~~--~~~ 133 (194)
T TIGR02081 62 GDLDEGLEAFPDKSFDYVILSQTLQATR-NPEEILD-EMLRVGR--HAIVSFPNFGYWRVRWSILTKGR--MPVT--GEL 133 (194)
T ss_pred EEhhhcccccCCCCcCEEEEhhHhHcCc-CHHHHHH-HHHHhCC--eEEEEcCChhHHHHHHHHHhCCc--cccC--CCC
Confidence 88875 3 35567899999999999998 5545554 4776655 56778888654332111110011 0000 000
Q ss_pred cccccCCCcccccCHHHHHHHHHHHHHHcCcEEE
Q 002345 842 SCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 875 (933)
Q Consensus 842 ~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsVE 875 (933)
.....+..|...|+.+++. .+.+..||++.
T Consensus 134 ~~~~~~~~~~~~~s~~~~~----~ll~~~Gf~v~ 163 (194)
T TIGR02081 134 PYDWYNTPNIHFCTIADFE----DLCGELNLRIL 163 (194)
T ss_pred CccccCCCCcccCcHHHHH----HHHHHCCCEEE
Confidence 1122233456678999999 57888999884
No 32
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.40 E-value=3.6e-12 Score=140.37 Aligned_cols=116 Identities=22% Similarity=0.278 Sum_probs=90.0
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
..++..+...++++|||||||+|.++..++..+. ..|+|||+|+.|+..++..-+ .. ....++.+..
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~-~~----------~~~~~v~~~~ 177 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRK-LL----------DNDKRAILEP 177 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHH-Hh----------ccCCCeEEEE
Confidence 3455566667789999999999999998888873 579999999999987643211 10 1234688889
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+++++++.. ..||+|+|+.|++|++ ++...|. +++++|+|| .+++.+..
T Consensus 178 ~~ie~lp~~-~~FD~V~s~gvL~H~~-dp~~~L~-el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 178 LGIEQLHEL-YAFDTVFSMGVLYHRK-SPLEHLK-QLKHQLVIKGELVLETLV 227 (314)
T ss_pred CCHHHCCCC-CCcCEEEEcchhhccC-CHHHHHH-HHHHhcCCCCEEEEEEEE
Confidence 999888754 4899999999999998 6666665 599999999 88887764
No 33
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.39 E-value=3.6e-12 Score=131.36 Aligned_cols=152 Identities=18% Similarity=0.242 Sum_probs=108.5
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+.|.+.+. ++.+|||+|||+|.++..|.+.-+ .+..|||++++.+..+.++ .+.+++
T Consensus 5 ~~I~~~I~--pgsrVLDLGCGdG~LL~~L~~~k~--v~g~GvEid~~~v~~cv~r-------------------Gv~Viq 61 (193)
T PF07021_consen 5 QIIAEWIE--PGSRVLDLGCGDGELLAYLKDEKQ--VDGYGVEIDPDNVAACVAR-------------------GVSVIQ 61 (193)
T ss_pred HHHHHHcC--CCCEEEecCCCchHHHHHHHHhcC--CeEEEEecCHHHHHHHHHc-------------------CCCEEE
Confidence 44666655 689999999999999999998543 7899999999999888553 567999
Q ss_pred cCccc-c-CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcC----CCCCcc
Q 002345 764 GSITV-F-DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQ----EDDPDE 836 (933)
Q Consensus 764 GDaed-L-p~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~----~eYpdE 836 (933)
+|+.+ + .+++++||.|+++.+|+|+. .+...+.+ + ||-| ..||+.||..|......+...|+ ..+|-
T Consensus 62 ~Dld~gL~~f~d~sFD~VIlsqtLQ~~~-~P~~vL~E-m---lRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy- 135 (193)
T PF07021_consen 62 GDLDEGLADFPDQSFDYVILSQTLQAVR-RPDEVLEE-M---LRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPY- 135 (193)
T ss_pred CCHHHhHhhCCCCCccEEehHhHHHhHh-HHHHHHHH-H---HHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCC-
Confidence 99976 3 46889999999999999998 55455443 5 4556 89999999876544333332222 22211
Q ss_pred hhhhccccccCCCcccccCHHHHHHHHHHHHHHcCcEEE
Q 002345 837 KTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 875 (933)
Q Consensus 837 p~g~~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsVE 875 (933)
.| + +..+....|-.+|.. ++++.|+.|+
T Consensus 136 ----~W--Y-dTPNih~~Ti~DFe~----lc~~~~i~I~ 163 (193)
T PF07021_consen 136 ----EW--Y-DTPNIHLCTIKDFED----LCRELGIRIE 163 (193)
T ss_pred ----cc--c-CCCCcccccHHHHHH----HHHHCCCEEE
Confidence 12 1 222333569999995 6667788884
No 34
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.39 E-value=1.8e-11 Score=125.88 Aligned_cols=115 Identities=23% Similarity=0.324 Sum_probs=85.6
Q ss_pred HHHHHHHhhc---CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002345 683 VEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759 (933)
Q Consensus 683 ve~Ild~L~~---~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV 759 (933)
.+.+.+.+.. .++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|+++.... ....++
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~-----------~~~~~i 114 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEA-----------GLAGNI 114 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhc-----------CCccCc
Confidence 3344555543 456799999999999999999887 57999999999999999876421 111478
Q ss_pred EEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEec
Q 002345 760 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 814 (933)
Q Consensus 760 efi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTP 814 (933)
.+..+|+.. ..+.||+|++..+++|++++....+.+.+.+.++++.++...+
T Consensus 115 ~~~~~d~~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 115 TFEVGDLES---LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred EEEEcCchh---ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECC
Confidence 999999543 3578999999999999986666666666777765545444434
No 35
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.38 E-value=2.9e-12 Score=138.90 Aligned_cols=113 Identities=22% Similarity=0.308 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002345 679 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 758 (933)
Q Consensus 679 y~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~n 758 (933)
....++.+++.+...++++|||||||.|.++..++++.+ .+|+||++|+++.+.+++++.+ ++-..+
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~-----------~gl~~~ 123 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAA-----------RGLEDN 123 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHH-----------cCCCcc
Confidence 445677788888889999999999999999999998853 8999999999999999998763 222348
Q ss_pred EEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC
Q 002345 759 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 807 (933)
Q Consensus 759 Vefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG 807 (933)
+++...|..++.. .||-||+.+++||+.......|.+.+.++|+||
T Consensus 124 v~v~l~d~rd~~e---~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 124 VEVRLQDYRDFEE---PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG 169 (283)
T ss_pred cEEEecccccccc---ccceeeehhhHHHhCcccHHHHHHHHHhhcCCC
Confidence 9999999988764 399999999999999777778888899999999
No 36
>PRK08317 hypothetical protein; Provisional
Probab=99.38 E-value=7.3e-12 Score=127.37 Aligned_cols=122 Identities=19% Similarity=0.244 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002345 679 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 758 (933)
Q Consensus 679 y~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~n 758 (933)
.....+.+++.+...++.+|||+|||+|.++..+++..++..+++|+|+++.+++.|+++.. ....+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-------------~~~~~ 70 (241)
T PRK08317 4 FRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-------------GLGPN 70 (241)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-------------CCCCc
Confidence 34444556677777778899999999999999998764334689999999999999987622 13357
Q ss_pred EEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 759 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 759 Vefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+.+..+|+.+.+.....||+|++..+++|+. ++...+ +++.++|+|| .+++..++
T Consensus 71 ~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~-~~~~~l-~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 71 VEFVRGDADGLPFPDGSFDAVRSDRVLQHLE-DPARAL-AEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred eEEEecccccCCCCCCCceEEEEechhhccC-CHHHHH-HHHHHHhcCCcEEEEEecC
Confidence 8999999988887778999999999999998 554555 4699999999 77777664
No 37
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.38 E-value=3.1e-12 Score=134.64 Aligned_cols=111 Identities=21% Similarity=0.356 Sum_probs=88.8
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+++.+...++.+|||||||+|.++..|++.. +..+|+|+|+|+.|++.|++++ .++.++.+
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----------------~~~~~~~~ 83 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----------------PDCQFVEA 83 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----------------CCCeEEEC
Confidence 34455555677899999999999999998764 2368999999999999997642 35789999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 765 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
|+.++. ...+||+|+++.++||++ +....+. ++.++|+|| .+++.+|+.
T Consensus 84 d~~~~~-~~~~fD~v~~~~~l~~~~-d~~~~l~-~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 84 DIASWQ-PPQALDLIFANASLQWLP-DHLELFP-RLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred chhccC-CCCCccEEEEccChhhCC-CHHHHHH-HHHHhcCCCcEEEEECCCC
Confidence 998765 345899999999999998 5545555 599999999 777777753
No 38
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.37 E-value=3.8e-12 Score=131.57 Aligned_cols=125 Identities=17% Similarity=0.275 Sum_probs=94.1
Q ss_pred cccCCchHHH-HHHHHHH-HhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccccc
Q 002345 672 ALFSPPLSKQ-RVEYALQ-HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA 749 (933)
Q Consensus 672 ~~F~PPLy~q-Rve~Ild-~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~ 749 (933)
..|....|++ |+..++. .|....-.++||+|||.|.++..|+.++ .+++++|+|+.+|+.|++++.
T Consensus 19 W~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~--------- 86 (201)
T PF05401_consen 19 WGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLA--------- 86 (201)
T ss_dssp GGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTT---------
T ss_pred CCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcC---------
Confidence 3455556776 4555554 4666667899999999999999999997 799999999999999999864
Q ss_pred CCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCCh-hHHHHHHHHHHHccCCC-EEEEEec
Q 002345 750 AVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 750 ~~Pr~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpd-D~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+.++|+|.++|+.+.. +.+.||+|++++|++++.+ +++..+.+.+...|+|| .+++.+.
T Consensus 87 -----~~~~V~~~~~dvp~~~-P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 87 -----GLPHVEWIQADVPEFW-PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -----T-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -----CCCCeEEEECcCCCCC-CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4468999999998754 5689999999999999985 56777777899999999 7777665
No 39
>PRK05785 hypothetical protein; Provisional
Probab=99.37 E-value=4.2e-12 Score=133.16 Aligned_cols=99 Identities=14% Similarity=0.163 Sum_probs=80.9
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
.+.+|||||||+|.++..|++..+ .+|+|+|+|++|++.|+++ ..++++|++++++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~--~~v~gvD~S~~Ml~~a~~~--------------------~~~~~~d~~~lp~~d 108 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFK--YYVVALDYAENMLKMNLVA--------------------DDKVVGSFEALPFRD 108 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcC--CEEEEECCCHHHHHHHHhc--------------------cceEEechhhCCCCC
Confidence 467999999999999999998742 6899999999999999652 135689999999999
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCCE--EEEEecCC
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRI--LIVSTPNY 816 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~--LIITTPN~ 816 (933)
++||+|++..+++|++ +....+. ++.|+|||.. +-++.|+.
T Consensus 109 ~sfD~v~~~~~l~~~~-d~~~~l~-e~~RvLkp~~~ile~~~p~~ 151 (226)
T PRK05785 109 KSFDVVMSSFALHASD-NIEKVIA-EFTRVSRKQVGFIAMGKPDN 151 (226)
T ss_pred CCEEEEEecChhhccC-CHHHHHH-HHHHHhcCceEEEEeCCCCc
Confidence 9999999999999998 5555555 5999999973 33445543
No 40
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.35 E-value=9.4e-12 Score=142.45 Aligned_cols=115 Identities=18% Similarity=0.195 Sum_probs=93.1
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+.+++.+...++.+|||||||+|.++..|++..+ .+|+|+|+|+.|++.|+++.. ....+++|.+
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~-------------~~~~~v~~~~ 320 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAI-------------GRKCSVEFEV 320 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhh-------------cCCCceEEEE
Confidence 4455555555678999999999999998887643 689999999999999987642 1234799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+|+.+.+++.+.||+|+|..+++|++ ++...+. ++.++|+|| .++++++.
T Consensus 321 ~d~~~~~~~~~~fD~I~s~~~l~h~~-d~~~~l~-~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 321 ADCTKKTYPDNSFDVIYSRDTILHIQ-DKPALFR-SFFKWLKPGGKVLISDYC 371 (475)
T ss_pred cCcccCCCCCCCEEEEEECCcccccC-CHHHHHH-HHHHHcCCCeEEEEEEec
Confidence 99998887778899999999999998 5555555 599999999 77887764
No 41
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.34 E-value=4e-11 Score=124.31 Aligned_cols=174 Identities=20% Similarity=0.290 Sum_probs=119.1
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002345 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~ 756 (933)
++...|.+++...+...++.+|||||||+|.++..+++.+ .+++|+|+++.+++.|++++.. ..
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~------------~~- 94 (233)
T PRK05134 31 RINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALE------------SG- 94 (233)
T ss_pred HhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHH------------cC-
Confidence 3445677788777766678899999999999999998876 6899999999999999876541 11
Q ss_pred ccEEEEEcCccccC-CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCC
Q 002345 757 KSAVLFDGSITVFD-SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDP 834 (933)
Q Consensus 757 ~nVefi~GDaedLp-~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYp 834 (933)
..+++..+|+.+.+ ...+.||+|++..+++|++ +....+ +.+.++|+|| .+++++++........... .. ++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~-~~~~~l-~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~--~~-~~- 168 (233)
T PRK05134 95 LKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVP-DPASFV-RACAKLVKPGGLVFFSTLNRNLKSYLLAIV--GA-EY- 168 (233)
T ss_pred CceEEEecCHHHhhhhcCCCccEEEEhhHhhccC-CHHHHH-HHHHHHcCCCcEEEEEecCCChHHHHHHHh--hH-HH-
Confidence 25788888887764 2357899999999999998 444444 5699999999 8888887754322221110 00 00
Q ss_pred cchhhhccccccCCCcccccCHHHHHHHHHHHHHHcCcEE-EEEeec
Q 002345 835 DEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV-EFSGVG 880 (933)
Q Consensus 835 dEp~g~~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsV-EF~GVG 880 (933)
...+.......+...++++++. .++.+.||.+ +..|+.
T Consensus 169 ----~~~~~~~~~~~~~~~~~~~~~~----~~l~~~Gf~~v~~~~~~ 207 (233)
T PRK05134 169 ----VLRMLPKGTHDYKKFIKPSELA----AWLRQAGLEVQDITGLH 207 (233)
T ss_pred ----HhhhcCcccCchhhcCCHHHHH----HHHHHCCCeEeeeeeEE
Confidence 0011111122344456888887 4667889987 344444
No 42
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.33 E-value=1.2e-11 Score=128.15 Aligned_cols=113 Identities=15% Similarity=0.249 Sum_probs=86.8
Q ss_pred HHHHHHHHhhc-CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 682 RVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 682 Rve~Ild~L~~-~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
..+++.+.+.. .++.+|||||||+|.++..|++.. +..+++|||+|+.|++.|++++ +++.
T Consensus 30 ~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~-----------------~~~~ 91 (204)
T TIGR03587 30 KLAMFARALNRLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL-----------------PNIN 91 (204)
T ss_pred HHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC-----------------CCCc
Confidence 34444444332 356789999999999999998863 1378999999999999997642 2467
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEec
Q 002345 761 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 814 (933)
Q Consensus 761 fi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTP 814 (933)
+.++|+.+ ++.+++||+|++..+++|++++....+.+++.++++ +.++|...
T Consensus 92 ~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~-~~v~i~e~ 143 (204)
T TIGR03587 92 IIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCSN-RYILIAEY 143 (204)
T ss_pred EEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhcC-cEEEEEEe
Confidence 88999888 677889999999999999987666666677998884 35665544
No 43
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.33 E-value=1.5e-11 Score=125.49 Aligned_cols=106 Identities=20% Similarity=0.309 Sum_probs=88.4
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
.+.+|||||||+|.++..+++.+ +..+++|+|+++.+++.+++++. +++.++.+|+.+.++..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----------------~~~~~~~~d~~~~~~~~ 96 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----------------ENVQFICGDAEKLPLED 96 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----------------CCCeEEecchhhCCCCC
Confidence 45789999999999999999876 34679999999999999976531 36889999999988778
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 818 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ef 818 (933)
.+||+|++..++||+. +....+ +.+.++|+|| .+++.++....
T Consensus 97 ~~fD~vi~~~~l~~~~-~~~~~l-~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 97 SSFDLIVSNLALQWCD-DLSQAL-SELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred CceeEEEEhhhhhhcc-CHHHHH-HHHHHHcCCCcEEEEEeCCccC
Confidence 8999999999999997 454455 5699999999 88888877543
No 44
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.30 E-value=1.9e-11 Score=130.00 Aligned_cols=109 Identities=18% Similarity=0.193 Sum_probs=86.8
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
..++.+|||||||+|..+..+++..++..+|+|+|+++.|++.|+++... .+..++++..+|++++++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~------------~g~~~v~~~~~d~~~l~~ 142 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK------------AGYTNVEFRLGEIEALPV 142 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH------------cCCCCEEEEEcchhhCCC
Confidence 34678999999999998776665432335799999999999999987542 234578999999999888
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
.+++||+|++..+++|.+ +....|. ++.++|||| .+++...
T Consensus 143 ~~~~fD~Vi~~~v~~~~~-d~~~~l~-~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 143 ADNSVDVIISNCVINLSP-DKERVFK-EAFRVLKPGGRFAISDV 184 (272)
T ss_pred CCCceeEEEEcCcccCCC-CHHHHHH-HHHHHcCCCcEEEEEEe
Confidence 778999999999999988 4445554 599999999 6666543
No 45
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.28 E-value=4.5e-11 Score=123.07 Aligned_cols=105 Identities=21% Similarity=0.258 Sum_probs=83.8
Q ss_pred CEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCC
Q 002345 696 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHG 775 (933)
Q Consensus 696 ~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~s 775 (933)
++|||||||+|.++..+++..+ ..+|+|+|+|+++++.|++++.. .+...+++++.+|+...+. .+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~-----------~gl~~~i~~~~~d~~~~~~-~~~ 67 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRA-----------LGLQGRIRIFYRDSAKDPF-PDT 67 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHh-----------cCCCcceEEEecccccCCC-CCC
Confidence 3799999999999999987652 26899999999999999887652 1223478999999876554 358
Q ss_pred ccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 776 FDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 776 FDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
||+|++.++++|++ +....| +++.++|+|| .+++.++.
T Consensus 68 fD~I~~~~~l~~~~-~~~~~l-~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 68 YDLVFGFEVIHHIK-DKMDLF-SNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CCEeehHHHHHhCC-CHHHHH-HHHHHHcCCCCEEEEEEcc
Confidence 99999999999998 444444 5699999999 77777664
No 46
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.28 E-value=8.1e-13 Score=119.41 Aligned_cols=96 Identities=25% Similarity=0.371 Sum_probs=58.3
Q ss_pred EEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC--CCCc
Q 002345 699 VDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--LHGF 776 (933)
Q Consensus 699 LDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~--~~sF 776 (933)
||||||+|.++..+.+.. +..+++|+|+|+.|++.|++++... ...+......+..+.... .++|
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~f 67 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAEL------------GNDNFERLRFDVLDLFDYDPPESF 67 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHC------------T---EEEEE--SSS---CCC----
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhc------------CCcceeEEEeecCChhhccccccc
Confidence 799999999999998874 3489999999999998888776531 222333344333332211 2599
Q ss_pred cEEEEccccccCChhHHHHHHHHHHHccCCCEE
Q 002345 777 DIGTCLEVIEHMEEDEASQFGNIVLSSFRPRIL 809 (933)
Q Consensus 777 DlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~L 809 (933)
|+|++..|+||++ +....+ +++.++|+||+.
T Consensus 68 D~V~~~~vl~~l~-~~~~~l-~~~~~~L~pgG~ 98 (99)
T PF08242_consen 68 DLVVASNVLHHLE-DIEAVL-RNIYRLLKPGGI 98 (99)
T ss_dssp SEEEEE-TTS--S--HHHHH-HHHTTT-TSS-E
T ss_pred ceehhhhhHhhhh-hHHHHH-HHHHHHcCCCCC
Confidence 9999999999995 555555 569999999944
No 47
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.28 E-value=2.6e-11 Score=126.65 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=88.2
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR- 772 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~- 772 (933)
++.+|||+|||.|..+..|+++| .+|+|||+|+.+++.+.+...........-...+....+++++++|+.+++..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 56799999999999999999998 79999999999999874421100000000000001234799999999987653
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
...||.|+-..+++|++++....+.+.+.++|+|| .+++.+-.
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 45799999999999999888888888899999999 55555443
No 48
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.27 E-value=3.8e-11 Score=124.11 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=87.1
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+++.+...++.++||+|||.|+.+..|++.| ..|+++|+|+.+++.+++.... ...+|+..+.|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~-------------~~l~i~~~~~D 85 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEE-------------EGLDIRTRVAD 85 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHH-------------TT-TEEEEE-B
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhh-------------cCceeEEEEec
Confidence 4445555678899999999999999999998 7999999999999998765432 22359999999
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 766 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 766 aedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
+.+..+. ..||+|++..|++|++++....+.+.+...++|| ..++.+
T Consensus 86 l~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 86 LNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp GCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred chhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 9888764 6899999999999999888888888899999999 444433
No 49
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.27 E-value=6.7e-11 Score=109.13 Aligned_cols=113 Identities=14% Similarity=0.181 Sum_probs=84.8
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
...+++.+....+.+|||+|||+|.++..+++..+ ..+|+|+|+++.+++.+++++.. .+..+++++
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~~~~~ 74 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARR------------FGVSNIVIV 74 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHH------------hCCCceEEE
Confidence 34455666555678999999999999999998742 26899999999999999887652 233478999
Q ss_pred EcCccc-cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 763 DGSITV-FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 763 ~GDaed-Lp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
.+|+.+ ++.....||+|++....+++ ..+.+.+.+.|+|| .++++.
T Consensus 75 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 75 EGDAPEALEDSLPEPDRVFIGGSGGLL-----QEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred eccccccChhhcCCCCEEEECCcchhH-----HHHHHHHHHHcCCCCEEEEEe
Confidence 998775 33334689999998765443 24456799999999 666654
No 50
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.27 E-value=4.4e-11 Score=134.86 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002345 680 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759 (933)
Q Consensus 680 ~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV 759 (933)
...++.+++.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+++++.|++++. + ..+
T Consensus 153 ~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~--------------~-l~v 215 (383)
T PRK11705 153 EAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCA--------------G-LPV 215 (383)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhc--------------c-CeE
Confidence 34556677777777889999999999999999988643 689999999999999988652 1 247
Q ss_pred EEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 760 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 760 efi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
++..+|..++ .+.||+|++.++++|++......+.+.+.++|||| .+++.+.
T Consensus 216 ~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 216 EIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred EEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 8888888765 36899999999999998555556666799999999 6776654
No 51
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.26 E-value=4.7e-11 Score=128.21 Aligned_cols=116 Identities=20% Similarity=0.252 Sum_probs=82.4
Q ss_pred CCCEEEEEcCCcCh----HHHHHhcCCC----CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCC----------CC-
Q 002345 694 CATTLVDFGCGSGS----LLDSLLDYPT----ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP----------CT- 754 (933)
Q Consensus 694 ~g~rVLDIGCGtG~----fL~~LAr~g~----~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~P----------r~- 754 (933)
++.+|+|+|||+|. ++..|++.++ ...+|+|+|+|+.||+.|++.+-.... . ...| ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~-~--~~~~~~~~~~yf~~~~~ 175 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERE-L--EDLPKALLARYFSRVED 175 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHH-H--hcCCHHHHhhhEEeCCC
Confidence 45699999999996 3444544321 125899999999999999874311000 0 0000 00
Q ss_pred -------CCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 755 -------DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 755 -------~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
...+|.|.++|+.+.+++.+.||+|+|..|++|++++....+.+++.+.|+|| .+++.
T Consensus 176 ~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 176 KYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred eEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 11368999999999877778999999999999998666656667799999999 55553
No 52
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.24 E-value=1.5e-10 Score=129.01 Aligned_cols=112 Identities=16% Similarity=0.118 Sum_probs=87.5
Q ss_pred HHHHHhhc-CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 685 YALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 685 ~Ild~L~~-~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
.+++.+.. .++.+|||||||+|.++..+++..+ ..+|+|+|+|+.|++.|+++.. ..+++++.
T Consensus 103 ~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~---------------~~~i~~i~ 166 (340)
T PLN02490 103 DALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---------------LKECKIIE 166 (340)
T ss_pred HHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhh---------------ccCCeEEe
Confidence 34444332 3567999999999999888877531 2689999999999999987532 23678999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+|+.++++..+.||+|++..+++|++ ++...| +++.++|+|| .+++..+
T Consensus 167 gD~e~lp~~~~sFDvVIs~~~L~~~~-d~~~~L-~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 167 GDAEDLPFPTDYADRYVSAGSIEYWP-DPQRGI-KEAYRVLKIGGKACLIGP 216 (340)
T ss_pred ccHHhCCCCCCceeEEEEcChhhhCC-CHHHHH-HHHHHhcCCCcEEEEEEe
Confidence 99999888888999999999999998 444555 4699999999 6666544
No 53
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.23 E-value=1.4e-10 Score=119.62 Aligned_cols=112 Identities=14% Similarity=0.150 Sum_probs=87.3
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVL 761 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~-~nVef 761 (933)
...+++.+...++.+|||||||+|.++..+++..+...+|+|+|+++++++.|++++.. .+. .++++
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~------------~~~~~~v~~ 128 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER------------LGYWGVVEV 128 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCcEEE
Confidence 44556666666778999999999999988887532236899999999999999887752 122 35899
Q ss_pred EEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+.+|+.+.......||+|++..+++|++ + .+.+.|+|| .++++..
T Consensus 129 ~~~d~~~~~~~~~~fD~Ii~~~~~~~~~-~-------~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 129 YHGDGKRGLEKHAPFDAIIVTAAASTIP-S-------ALVRQLKDGGVLVIPVE 174 (205)
T ss_pred EECCcccCCccCCCccEEEEccCcchhh-H-------HHHHhcCcCcEEEEEEc
Confidence 9999987554557899999999999987 2 367889999 7766654
No 54
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.22 E-value=5.6e-10 Score=113.26 Aligned_cols=115 Identities=19% Similarity=0.211 Sum_probs=90.1
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
..+++.+...++.+|||+|||.|.++..+++..+...+++|+|+++.+++.++++.. ...++.+..
T Consensus 29 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------------~~~~i~~~~ 94 (223)
T TIGR01934 29 RRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------------LPLNIEFIQ 94 (223)
T ss_pred HHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--------------cCCCceEEe
Confidence 344455555578899999999999999998876322489999999999999987642 224689999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+|+.+.++..+.||+|++..+++|++ +....+ +.+.++|+|| .+++...
T Consensus 95 ~d~~~~~~~~~~~D~i~~~~~~~~~~-~~~~~l-~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 95 ADAEALPFEDNSFDAVTIAFGLRNVT-DIQKAL-REMYRVLKPGGRLVILEF 144 (223)
T ss_pred cchhcCCCCCCcEEEEEEeeeeCCcc-cHHHHH-HHHHHHcCCCcEEEEEEe
Confidence 99998877677899999999999998 444444 5699999999 6655443
No 55
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.21 E-value=5.9e-11 Score=127.06 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=85.3
Q ss_pred CchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCC--CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002345 676 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA--LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 753 (933)
Q Consensus 676 PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~--f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr 753 (933)
.++...-.+.+.+.+. ....+|||+|||+|.++..|++..+. ...++|+|+|+.|++.|+++
T Consensus 68 ~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~--------------- 131 (272)
T PRK11088 68 QPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR--------------- 131 (272)
T ss_pred HHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh---------------
Confidence 3444443344433332 34578999999999999988865311 13799999999999999654
Q ss_pred CCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002345 754 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 818 (933)
Q Consensus 754 ~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ef 818 (933)
.+++.+.++|+.++++.+++||+|++...-. . .+++.++|+|| .+++.+|+..+
T Consensus 132 --~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~~--------~-~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 132 --YPQVTFCVASSHRLPFADQSLDAIIRIYAPC--------K-AEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred --CCCCeEEEeecccCCCcCCceeEEEEecCCC--------C-HHHHHhhccCCCEEEEEeCCCcc
Confidence 2368899999999998889999999876421 1 24589999999 88888887654
No 56
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.21 E-value=1.6e-10 Score=119.58 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=89.0
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
.+..+++.+...++.+|||||||+|.++..|++..+...+|+|+|+++++++.|++++.. .+..++++
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~------------~g~~~v~~ 132 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK------------LGLDNVIV 132 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH------------CCCCCeEE
Confidence 345566777777889999999999999999988753224699999999999999988762 24468999
Q ss_pred EEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+++|+.+.......||+|++.....+++ +.+.+.|+|| .+++...
T Consensus 133 ~~~d~~~~~~~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 133 IVGDGTQGWEPLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMPVG 178 (215)
T ss_pred EECCcccCCcccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEEEc
Confidence 9999987554556899999998888876 2367789999 6666543
No 57
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.21 E-value=7.2e-11 Score=135.25 Aligned_cols=112 Identities=10% Similarity=0.186 Sum_probs=90.0
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
..+++.+...++.+|||||||+|.++..|++.+ .+|+|+|+++.|++.+++.. ...+++.+++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~--------------~~~~~i~~~~ 89 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESIN--------------GHYKNVKFMC 89 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHh--------------ccCCceEEEE
Confidence 345566665567899999999999999999886 68999999999999875431 1235789999
Q ss_pred cCccc--cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 764 GSITV--FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 764 GDaed--Lp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
+|+.. ++++..+||+|+|..+++|++++....+.+++.++|+|| .+++.
T Consensus 90 ~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 90 ADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred ecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 99963 556678999999999999999766666667799999999 55553
No 58
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.20 E-value=7.2e-11 Score=121.62 Aligned_cols=113 Identities=15% Similarity=0.136 Sum_probs=86.2
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc-cccC--
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI-TVFD-- 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDa-edLp-- 770 (933)
.+.+|||||||+|.++..+++.. +..+|+|+|+|+.|++.|++++.. .+..++.++++|+ ..++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~------------~~~~~v~~~~~d~~~~l~~~ 106 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEE------------EGLTNLRLLCGDAVEVLLDM 106 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHH------------cCCCCEEEEecCHHHHHHHH
Confidence 56799999999999999998764 236899999999999999887652 2345799999999 6665
Q ss_pred CCCCCccEEEEccccccCC------hhHHHHHHHHHHHccCCC-EEEEEecCCchh
Q 002345 771 SRLHGFDIGTCLEVIEHME------EDEASQFGNIVLSSFRPR-ILIVSTPNYEYN 819 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLp------dD~l~aL~eeI~rlLKPG-~LIITTPN~efN 819 (933)
+..+.||+|++.....+.. ......+.+++.++|+|| .+++.+++..+-
T Consensus 107 ~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~ 162 (202)
T PRK00121 107 FPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYA 162 (202)
T ss_pred cCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHH
Confidence 5567899999976543221 111234556799999999 888888876544
No 59
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.20 E-value=1.9e-10 Score=119.52 Aligned_cols=112 Identities=12% Similarity=0.127 Sum_probs=88.5
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
-+..+++.+...++.+|||||||+|.++..+++..+...+|+|+|+++++++.|++++.. .+..++++
T Consensus 64 ~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~------------~g~~~v~~ 131 (212)
T PRK13942 64 MVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK------------LGYDNVEV 131 (212)
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCeEE
Confidence 344566666667889999999999999988887643336899999999999999988762 24457999
Q ss_pred EEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
.++|+.........||+|++...+++++ +.+.+.|+|| .+++..
T Consensus 132 ~~gd~~~~~~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 132 IVGDGTLGYEENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EECCcccCCCcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 9999987655567899999998888876 1366789999 666654
No 60
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.19 E-value=2.3e-10 Score=120.07 Aligned_cols=117 Identities=10% Similarity=0.107 Sum_probs=87.7
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcc-cccCC-CCCCCccEEEEEcCccccC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK-LDAAV-PCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~-~~~~~-Pr~~~~nVefi~GDaedLp 770 (933)
.++.+|||+|||.|..+..|+++| .+|+|||+|+.+++.+.+... .... ..... ......+|+++++|+.+++
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~~~--l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENG--LTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHHcC--CCccccccccccccccCceEEEECcccCCC
Confidence 356799999999999999999998 799999999999998743211 0000 00000 0112357999999999886
Q ss_pred CC-CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 771 SR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 771 ~~-~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
.. ...||+|+-..+++|++++....+.+.+.++|+|| .+++.+-
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 111 AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 53 35899999999999999888888888999999999 4444333
No 61
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.19 E-value=1.8e-10 Score=117.45 Aligned_cols=103 Identities=13% Similarity=0.153 Sum_probs=78.7
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
...+.+|||||||+|.++..++..+ +..+|+|+|+|+.|++.++++++. .+..+++++++|+.++.
T Consensus 40 ~~~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~------------~~~~~i~~i~~d~~~~~- 105 (181)
T TIGR00138 40 YLDGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAE------------LGLNNVEIVNGRAEDFQ- 105 (181)
T ss_pred hcCCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHH------------hCCCCeEEEecchhhcc-
Confidence 3457899999999999998887654 236899999999999999877652 23457999999998864
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
..+.||+|++.. +++++ .+.+.+.++|+|| .+++...
T Consensus 106 ~~~~fD~I~s~~-~~~~~-----~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 106 HEEQFDVITSRA-LASLN-----VLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ccCCccEEEehh-hhCHH-----HHHHHHHHhcCCCCEEEEEcC
Confidence 356899999976 55544 2335589999999 5555543
No 62
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.19 E-value=3.1e-10 Score=116.29 Aligned_cols=115 Identities=16% Similarity=0.243 Sum_probs=89.8
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
++..+...++.+|||+|||+|.++..+++.++...+++|+|+++.+++.+++++.. .....++.+..+|
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-----------~~~~~~~~~~~~d 111 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD-----------LGLSGNVEFVQGD 111 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc-----------cccccCeEEEecc
Confidence 44444444678999999999999999988763347999999999999999887541 1123478999999
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 766 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 766 aedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
+.+.+...+.||+|++..+++|+. +....+ +.+.++|+|| .+++.+
T Consensus 112 ~~~~~~~~~~~D~I~~~~~l~~~~-~~~~~l-~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 112 AEALPFPDNSFDAVTIAFGLRNVP-DIDKAL-REMYRVLKPGGRLVILE 158 (239)
T ss_pred cccCCCCCCCccEEEEecccccCC-CHHHHH-HHHHHhccCCcEEEEEE
Confidence 988877677899999999999998 454455 4699999999 555543
No 63
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.18 E-value=3e-10 Score=121.16 Aligned_cols=123 Identities=12% Similarity=0.150 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCC-----CceEEEEeCChHHHHHHHHHHhhhhhcccccCCC
Q 002345 678 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA-----LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP 752 (933)
Q Consensus 678 Ly~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~-----f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~P 752 (933)
.++..-+.....+....+.++||++||+|..+..+.++... ..+|+++||++.||..++++..+. |
T Consensus 84 iHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~---------~ 154 (296)
T KOG1540|consen 84 IHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR---------P 154 (296)
T ss_pred hhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc---------C
Confidence 34444455667777778899999999999999888876432 168999999999999998876421 1
Q ss_pred CCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002345 753 CTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 811 (933)
Q Consensus 753 r~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LII 811 (933)
-.....+.|+.+|++++|+++..||..++..-|...+ ++...+. +++|+|||| .+.+
T Consensus 155 l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t-h~~k~l~-EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 155 LKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT-HIQKALR-EAYRVLKPGGRFSC 212 (296)
T ss_pred CCcCCceEEEeCCcccCCCCCCcceeEEEecceecCC-CHHHHHH-HHHHhcCCCcEEEE
Confidence 1223359999999999999999999999999999998 6666776 499999999 4444
No 64
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.14 E-value=3.3e-10 Score=123.87 Aligned_cols=164 Identities=17% Similarity=0.213 Sum_probs=111.0
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
.+.+..++....+++|||||||+|.++..+++.|+ ..|+|+|.+...+-.++. ++... +....+.+.
T Consensus 104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~-i~~~l----------g~~~~~~~l 170 (315)
T PF08003_consen 104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEA-IKHFL----------GQDPPVFEL 170 (315)
T ss_pred HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHH-HHHHh----------CCCccEEEc
Confidence 34567777778999999999999999999999985 789999999987666532 12111 111234444
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhc
Q 002345 763 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQ 841 (933)
Q Consensus 763 ~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~ 841 (933)
-..+++++. .+.||+|+|.+||.|.. ++...+.+ +...|+|| .+|+.|.-.+-..- ..+.|.+ .|
T Consensus 171 plgvE~Lp~-~~~FDtVF~MGVLYHrr-~Pl~~L~~-Lk~~L~~gGeLvLETlvi~g~~~-~~L~P~~--rY-------- 236 (315)
T PF08003_consen 171 PLGVEDLPN-LGAFDTVFSMGVLYHRR-SPLDHLKQ-LKDSLRPGGELVLETLVIDGDEN-TVLVPED--RY-------- 236 (315)
T ss_pred Ccchhhccc-cCCcCEEEEeeehhccC-CHHHHHHH-HHHhhCCCCEEEEEEeeecCCCc-eEEccCC--cc--------
Confidence 456777777 78999999999999998 88888875 99999999 88888765331110 0111100 12
Q ss_pred cccccCCCcccccCHHHHHHHHHHHHHHcCc-EEEEEeec
Q 002345 842 SCKFRNHDHKFEWTRDQFNCWATELAARHNY-SVEFSGVG 880 (933)
Q Consensus 842 ~~~fRh~DHkFeWTreEF~~Was~LA~r~GY-sVEF~GVG 880 (933)
.. ...-.|--|...+..|++ +.|| .|+...+.
T Consensus 237 -a~--m~nv~FiPs~~~L~~wl~----r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 237 -AK--MRNVWFIPSVAALKNWLE----RAGFKDVRCVDVS 269 (315)
T ss_pred -cC--CCceEEeCCHHHHHHHHH----HcCCceEEEecCc
Confidence 11 122345569999999864 4566 45554443
No 65
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.14 E-value=8.5e-11 Score=122.89 Aligned_cols=110 Identities=21% Similarity=0.338 Sum_probs=94.2
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
++..+......+|.|+|||.|..+..|+++. +...|+|+|-|++||+.|+++ .++++|..+|
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r-----------------lp~~~f~~aD 83 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR-----------------LPDATFEEAD 83 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh-----------------CCCCceeccc
Confidence 4566677788899999999999999999987 568999999999999999764 3588999999
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 766 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 766 aedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+.++.. ...+|+++++.|++++++ -...|.+ +...|.|| .+-+..|+.
T Consensus 84 l~~w~p-~~~~dllfaNAvlqWlpd-H~~ll~r-L~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 84 LRTWKP-EQPTDLLFANAVLQWLPD-HPELLPR-LVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred HhhcCC-CCccchhhhhhhhhhccc-cHHHHHH-HHHhhCCCceEEEECCCc
Confidence 998753 568999999999999994 4456664 99999999 999999974
No 66
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.13 E-value=4.2e-10 Score=115.66 Aligned_cols=99 Identities=19% Similarity=0.212 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
++.+|||||||+|.++..+++.. +..+|+|+|+++.|++.|++++.. .+..+++++++|+.+++. .
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~------------~~l~~i~~~~~d~~~~~~-~ 110 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAE------------LGLKNVTVVHGRAEEFGQ-E 110 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHH------------cCCCCEEEEeccHhhCCC-C
Confidence 37899999999999998888643 237999999999999999987652 234469999999998776 6
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
++||+|++... . +. ..+.+.++++|+|| .+++.
T Consensus 111 ~~fDlV~~~~~----~-~~-~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 111 EKFDVVTSRAV----A-SL-SDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CCccEEEEccc----c-CH-HHHHHHHHHhcCCCeEEEEE
Confidence 78999999752 2 22 24445699999999 55544
No 67
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.11 E-value=8.1e-10 Score=111.67 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=83.7
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
...+++.+...++.+|||||||+|.++..+++.+ +..+|+|+|+++.+++.|++++.. .+..+++++
T Consensus 20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~------------~~~~~i~~~ 86 (187)
T PRK08287 20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQR------------FGCGNIDII 86 (187)
T ss_pred HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH------------hCCCCeEEE
Confidence 3445566666678899999999999999998865 236899999999999999887642 233468999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 763 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 763 ~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
.+|+.. +. ...||+|++....+++. .+.+.+.+.|+|| .+++..
T Consensus 87 ~~d~~~-~~-~~~~D~v~~~~~~~~~~-----~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 87 PGEAPI-EL-PGKADAIFIGGSGGNLT-----AIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred ecCchh-hc-CcCCCEEEECCCccCHH-----HHHHHHHHhcCCCeEEEEEE
Confidence 998753 22 35799999987766553 3345689999999 666644
No 68
>PRK06922 hypothetical protein; Provisional
Probab=99.10 E-value=6.1e-10 Score=131.98 Aligned_cols=108 Identities=18% Similarity=0.253 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 770 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp-- 770 (933)
.++.+|||||||+|.++..+++.. +..+|+|+|+|+.|++.|+++... ...++.++++|+.+++
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~-------------~g~~ie~I~gDa~dLp~~ 482 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQN-------------EGRSWNVIKGDAINLSSS 482 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhh-------------cCCCeEEEEcchHhCccc
Confidence 367899999999999998888754 347999999999999999876431 1246889999998876
Q ss_pred CCCCCccEEEEccccccCC-----------hhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 771 SRLHGFDIGTCLEVIEHME-----------EDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLp-----------dD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+.+++||+|+++.++||+. .+....+.++++++|||| .++|...
T Consensus 483 fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 483 FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 5678999999999999862 133445556799999999 6776643
No 69
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.09 E-value=1.3e-09 Score=109.36 Aligned_cols=112 Identities=12% Similarity=0.078 Sum_probs=86.3
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.+++++.. .+ .++++..+|
T Consensus 11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~------------~~-~~~~~~~~d 74 (179)
T TIGR00537 11 LEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKL------------NN-VGLDVVMTD 74 (179)
T ss_pred HHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHH------------cC-CceEEEEcc
Confidence 4455555567899999999999999999987 4899999999999999887652 12 268899999
Q ss_pred ccccCCCCCCccEEEEccccccCChh-------------------HHHHHHHHHHHccCCC-EEEEEecC
Q 002345 766 ITVFDSRLHGFDIGTCLEVIEHMEED-------------------EASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 766 aedLp~~~~sFDlVVc~eVLEHLpdD-------------------~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+.+.. ..+||+|+++-.++|.+++ ....+.+++.++|+|| .+++.++.
T Consensus 75 ~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 75 LFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred ccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 87654 3589999999888877632 1244566799999998 66665543
No 70
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.09 E-value=2.4e-09 Score=107.43 Aligned_cols=124 Identities=19% Similarity=0.260 Sum_probs=91.0
Q ss_pred cCCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002345 674 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 753 (933)
Q Consensus 674 F~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr 753 (933)
|+++--..-...+++.+......+|||+|||+|.++..+++.++ ..+|+++|+++.+++.|++++..
T Consensus 11 Fs~~~~d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~------------ 77 (170)
T PF05175_consen 11 FSPPRLDAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAER------------ 77 (170)
T ss_dssp TTTTSHHHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHH------------
T ss_pred eCCCCCCHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHh------------
Confidence 44444444445677777766888999999999999999999873 35799999999999999988763
Q ss_pred CCCccEEEEEcCccccCCCCCCccEEEEccccccCCh---hHHHHHHHHHHHccCCC-EEEE
Q 002345 754 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE---DEASQFGNIVLSSFRPR-ILIV 811 (933)
Q Consensus 754 ~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpd---D~l~aL~eeI~rlLKPG-~LII 811 (933)
.+..+++++.+|+.+... ...||+|+|+=-++.-.. +....|.+...++|+|| .+++
T Consensus 78 n~~~~v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 78 NGLENVEVVQSDLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp TTCTTEEEEESSTTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCcccccccccccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 233349999999876433 689999999866554442 24466667799999999 4533
No 71
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.08 E-value=1.2e-09 Score=112.41 Aligned_cols=108 Identities=12% Similarity=0.110 Sum_probs=85.6
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
..+++.+...++.+|||||||+|.++..|++.. .+|+++|+++++++.|++++.. .+..++++..
T Consensus 68 ~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~------------~~~~~v~~~~ 132 (212)
T PRK00312 68 ARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQ------------LGLHNVSVRH 132 (212)
T ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHH------------CCCCceEEEE
Confidence 445566666678899999999999998888875 5899999999999999988762 2445699999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+|..+.......||+|++...+++++ +.+.+.|+|| .+++...
T Consensus 133 ~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 133 GDGWKGWPAYAPFDRILVTAAAPEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcccCCCcCCCcCEEEEccCchhhh--------HHHHHhcCCCcEEEEEEc
Confidence 99866433457899999998888875 2367799999 7777665
No 72
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.07 E-value=5.9e-10 Score=113.99 Aligned_cols=114 Identities=12% Similarity=0.098 Sum_probs=85.9
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC---
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--- 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp--- 770 (933)
...+|||||||+|.++..+++.. +...|+|+|+++.|++.|++++.. .+..+++++++|+.+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~------------~~l~ni~~i~~d~~~~~~~~ 82 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANK------------LGLKNLHVLCGDANELLDKF 82 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHH------------hCCCCEEEEccCHHHHHHhh
Confidence 45689999999999999999875 347899999999999999887652 24458999999998653
Q ss_pred CCCCCccEEEEccccccCChhH------HHHHHHHHHHccCCC-EEEEEecCCchhH
Q 002345 771 SRLHGFDIGTCLEVIEHMEEDE------ASQFGNIVLSSFRPR-ILIVSTPNYEYNA 820 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLpdD~------l~aL~eeI~rlLKPG-~LIITTPN~efNs 820 (933)
...+.+|.|++.....|..... ...+.+.+.++|||| .+++.|.+..+..
T Consensus 83 ~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~ 139 (194)
T TIGR00091 83 FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFE 139 (194)
T ss_pred CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence 3345899999876443322100 134556799999999 8888888876544
No 73
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.05 E-value=2.2e-09 Score=116.62 Aligned_cols=115 Identities=10% Similarity=0.060 Sum_probs=89.2
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+.+.+.+...+..+|||||||+|.++..+++.. +..+++++|. +.+++.+++++.+ .+...+++++.
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~-----------~gl~~rv~~~~ 205 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAE-----------KGVADRMRGIA 205 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHh-----------CCccceEEEEe
Confidence 345555555667899999999999999999876 3468999997 7899999887652 12234799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
+|+.+.+.+ .+|+|++..++||.+++....+.+++++.|+|| .++|..
T Consensus 206 ~d~~~~~~~--~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 206 VDIYKESYP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred cCccCCCCC--CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999765443 479999999999998666556666799999999 666654
No 74
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.05 E-value=8.8e-10 Score=112.90 Aligned_cols=136 Identities=21% Similarity=0.260 Sum_probs=102.0
Q ss_pred cCCchHHHHHHHHHHHhh----cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccccc
Q 002345 674 FSPPLSKQRVEYALQHIK----ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA 749 (933)
Q Consensus 674 F~PPLy~qRve~Ild~L~----~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~ 749 (933)
|........++|+.+... .....+|||+|||+|.++..|++.+- -..++|||.|+++++.|+....
T Consensus 43 Fg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe--------- 112 (227)
T KOG1271|consen 43 FGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAE--------- 112 (227)
T ss_pred cCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHH---------
Confidence 555566667788888775 22344999999999999999999872 1349999999999999976544
Q ss_pred CCCCCCCcc-EEEEEcCccccCCCCCCccEEEEccccccCC------hhHHHHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002345 750 AVPCTDVKS-AVLFDGSITVFDSRLHGFDIGTCLEVIEHME------EDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 821 (933)
Q Consensus 750 ~~Pr~~~~n-Vefi~GDaedLp~~~~sFDlVVc~eVLEHLp------dD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~ 821 (933)
+.+.++ |+|.+.|+.+.++..+.||+|.--..+..+. ...+..+...+.++|+|| +++|+.-|......
T Consensus 113 ---~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dEL 189 (227)
T KOG1271|consen 113 ---RDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDEL 189 (227)
T ss_pred ---hcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHH
Confidence 234444 9999999999888888999998766554442 122245666788999999 88888888665443
Q ss_pred H
Q 002345 822 L 822 (933)
Q Consensus 822 f 822 (933)
-
T Consensus 190 v 190 (227)
T KOG1271|consen 190 V 190 (227)
T ss_pred H
Confidence 3
No 75
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.04 E-value=3.5e-09 Score=114.55 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=107.0
Q ss_pred hhhHHhhhhccccCCccccccCCchhhHhhhccccccccccccchhhhhhcccCCchHHHHHHHHHHHhhcCCC-CEEEE
Q 002345 622 PQVEVVTAQMSVGQSACFCKELPPQELILAAADDSARTFSLLSSKDRMEQALFSPPLSKQRVEYALQHIKESCA-TTLVD 700 (933)
Q Consensus 622 hhLkvlVtq~reGqsiff~r~lP~~dlilAAa~Ds~~dl~~Ls~eer~e~~~F~PPLy~qRve~Ild~L~~~~g-~rVLD 700 (933)
.+++.++.+|..|.+.+|.... ..-.+.++. .-..+.+..|-.+.-++.+++.+..... .+|||
T Consensus 56 ~~~~~~~~~r~~~~pl~yi~g~---------~~f~g~~f~------v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLD 120 (284)
T TIGR00536 56 ERIFRLVLRRVKGVPVAYLLGS---------KEFYGLEFF------VNEHVLIPRPETEELVEKALASLISQNPILHILD 120 (284)
T ss_pred HHHHHHHHHHHcCCCHHHHhCc---------ceEcCeEEE------ECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEE
Confidence 3477778888888888887321 111111221 0111222334444445555544432233 68999
Q ss_pred EcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEEEEEcCccccCCCCCCccEE
Q 002345 701 FGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDGSITVFDSRLHGFDIG 779 (933)
Q Consensus 701 IGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~-~nVefi~GDaedLp~~~~sFDlV 779 (933)
+|||+|.++..++... +..+|+|+|+|+.+++.|++++.. .+. .+++++++|+.+. .....||+|
T Consensus 121 lG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~------------~~~~~~v~~~~~d~~~~-~~~~~fDlI 186 (284)
T TIGR00536 121 LGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEK------------NQLEHRVEFIQSNLFEP-LAGQKIDII 186 (284)
T ss_pred EeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH------------cCCCCcEEEEECchhcc-CcCCCccEE
Confidence 9999999999999865 236899999999999999988652 122 2599999998763 233479999
Q ss_pred EEc-------------cccccCCh----------hHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 780 TCL-------------EVIEHMEE----------DEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 780 Vc~-------------eVLEHLpd----------D~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+++ +++.|-|. +....+.+.+.++|+|| .+++.+.+.
T Consensus 187 vsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 187 VSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred EECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 995 34445441 12345566788999999 777666553
No 76
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.03 E-value=8.1e-10 Score=102.01 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=82.2
Q ss_pred CCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--CC
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--SR 772 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp--~~ 772 (933)
+.+|||+|||+|.++..+++.+ ..+++|+|+++..++.|+.++... ....+++++++|+.+.. ..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~-----------~~~~~~~~~~~D~~~~~~~~~ 67 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRN-----------GLDDRVEVIVGDARDLPEPLP 67 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHC-----------TTTTTEEEEESHHHHHHHTCT
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHc-----------cCCceEEEEECchhhchhhcc
Confidence 4589999999999999999876 379999999999999999876531 12357999999998876 56
Q ss_pred CCCccEEEEccccccCC------hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 773 LHGFDIGTCLEVIEHME------EDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLp------dD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
..+||+|+++--..... .+....|.+.+.++|+|| .+++.+||
T Consensus 68 ~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 68 DGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp TT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 78999999976554321 122346667799999999 77777764
No 77
>PLN03075 nicotianamine synthase; Provisional
Probab=99.02 E-value=3.3e-09 Score=116.27 Aligned_cols=108 Identities=14% Similarity=0.164 Sum_probs=80.7
Q ss_pred CCCEEEEEcCCcChHHHH--HhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 694 CATTLVDFGCGSGSLLDS--LLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~--LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
.+++|+|||||.|.++.. +++.. +..+++|+|+++++++.|++.+.+. .+-..+++|..+|+.+...
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~-p~~~~~giD~d~~ai~~Ar~~~~~~----------~gL~~rV~F~~~Da~~~~~ 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHL-PTTSFHNFDIDPSANDVARRLVSSD----------PDLSKRMFFHTADVMDVTE 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHhhhc----------cCccCCcEEEECchhhccc
Confidence 789999999998855432 33333 3468999999999999999876421 1123479999999988654
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
....||+|+|. +++++.......+.+.+.+.|+|| .+++-.
T Consensus 192 ~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 192 SLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 46789999999 999985333344445699999999 666655
No 78
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.01 E-value=7.7e-09 Score=112.34 Aligned_cols=125 Identities=15% Similarity=0.156 Sum_probs=85.3
Q ss_pred chHHHHHHHHHH-HhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002345 677 PLSKQRVEYALQ-HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 755 (933)
Q Consensus 677 PLy~qRve~Ild-~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~ 755 (933)
|.....+...+. .+...++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++.. .+
T Consensus 103 ~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~------------~~ 169 (284)
T TIGR03533 103 SPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIER------------HG 169 (284)
T ss_pred CchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH------------cC
Confidence 334444444433 2322345799999999999999999865 236899999999999999988652 12
Q ss_pred C-ccEEEEEcCccccCCCCCCccEEEEc------cccccCCh-----------------hHHHHHHHHHHHccCCC-EEE
Q 002345 756 V-KSAVLFDGSITVFDSRLHGFDIGTCL------EVIEHMEE-----------------DEASQFGNIVLSSFRPR-ILI 810 (933)
Q Consensus 756 ~-~nVefi~GDaedLp~~~~sFDlVVc~------eVLEHLpd-----------------D~l~aL~eeI~rlLKPG-~LI 810 (933)
. .+++++++|+.+. .+...||+|+++ ..+.++++ +....+.+.+.++|+|| .++
T Consensus 170 ~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~ 248 (284)
T TIGR03533 170 LEDRVTLIQSDLFAA-LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLV 248 (284)
T ss_pred CCCcEEEEECchhhc-cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence 2 4699999998653 234579999995 12222221 11234556688999999 777
Q ss_pred EEecC
Q 002345 811 VSTPN 815 (933)
Q Consensus 811 ITTPN 815 (933)
+.+.+
T Consensus 249 ~e~g~ 253 (284)
T TIGR03533 249 VEVGN 253 (284)
T ss_pred EEECc
Confidence 77765
No 79
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.00 E-value=3.8e-09 Score=115.34 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=80.6
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DSR 772 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL-p~~ 772 (933)
++.+|||+|||+|..+..|++......+|+|||+|++||+.|++++.+. ....++.++++|+.+. +..
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-----------~p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-----------YPQLEVHGICADFTQPLALP 131 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-----------CCCceEEEEEEcccchhhhh
Confidence 4578999999999999988877411268999999999999998876521 1123578899998763 322
Q ss_pred CC----CccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 773 LH----GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 773 ~~----sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
.. ...++++...++|+++++...+.+.+++.|+|| .++|..
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 21 233444456899999878777888899999999 666544
No 80
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.97 E-value=8.1e-09 Score=107.47 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=85.6
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002345 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~ 756 (933)
+.....++.+++.+. ..+.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|++++.. .+.
T Consensus 71 ~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~------------~~~ 136 (251)
T TIGR03534 71 PDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAAR------------LGL 136 (251)
T ss_pred CChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH------------cCC
Confidence 334444455555554 245689999999999999999864 236899999999999999887652 233
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEcc------ccccCChhH------------------HHHHHHHHHHccCCC-EEEE
Q 002345 757 KSAVLFDGSITVFDSRLHGFDIGTCLE------VIEHMEEDE------------------ASQFGNIVLSSFRPR-ILIV 811 (933)
Q Consensus 757 ~nVefi~GDaedLp~~~~sFDlVVc~e------VLEHLpdD~------------------l~aL~eeI~rlLKPG-~LII 811 (933)
.++.++++|+.+ ....+.||+|+++- .++++..+. ...+.+.+.++|+|| .+++
T Consensus 137 ~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 137 DNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred CeEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 479999999976 33467899999943 223332111 124566799999999 6666
Q ss_pred Ee
Q 002345 812 ST 813 (933)
Q Consensus 812 TT 813 (933)
..
T Consensus 216 ~~ 217 (251)
T TIGR03534 216 EI 217 (251)
T ss_pred EE
Confidence 44
No 81
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.96 E-value=8.3e-09 Score=109.36 Aligned_cols=118 Identities=12% Similarity=0.091 Sum_probs=89.0
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+||+.|||.|.-+..|++.| .+|+|+|+|+.+++.+.+...-...-............+++++++|+.+++..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 356799999999999999999998 78999999999999986532100000000000011234799999999998642
Q ss_pred ---CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 773 ---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 773 ---~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
.+.||+|+-...+.+++++....+.+.+.++|+|| .+++-+
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 36899999999999999999999999999999998 444433
No 82
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.95 E-value=5e-09 Score=109.19 Aligned_cols=120 Identities=19% Similarity=0.210 Sum_probs=90.6
Q ss_pred hhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE-EEEcCccc
Q 002345 690 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV-LFDGSITV 768 (933)
Q Consensus 690 L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe-fi~GDaed 768 (933)
+.......|||||||+|......--. +..+|+++|+++.|-+.|.+.+.. ...+++. |++++.++
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E------------~k~~~~~~fvva~ge~ 137 (252)
T KOG4300|consen 72 LGKSGKGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAE------------KKPLQVERFVVADGEN 137 (252)
T ss_pred hcccCccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhh------------ccCcceEEEEeechhc
Confidence 33344457899999999988766533 247999999999999999887652 2456776 99999999
Q ss_pred cC-CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE-EecCC---chhHHHHhh
Q 002345 769 FD-SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV-STPNY---EYNAILQKS 825 (933)
Q Consensus 769 Lp-~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LII-TTPN~---efNs~f~~l 825 (933)
++ ..++++|+|+|..||.-.. ++.+.+. ++.++|||| .+++ .--.. .+|-+|+..
T Consensus 138 l~~l~d~s~DtVV~TlvLCSve-~~~k~L~-e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v 198 (252)
T KOG4300|consen 138 LPQLADGSYDTVVCTLVLCSVE-DPVKQLN-EVRRLLRPGGRIIFIEHVAGEYGFWNRILQQV 198 (252)
T ss_pred CcccccCCeeeEEEEEEEeccC-CHHHHHH-HHHHhcCCCcEEEEEecccccchHHHHHHHHH
Confidence 87 6789999999999999998 7767776 599999999 4443 33322 345555543
No 83
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.95 E-value=6.2e-09 Score=114.84 Aligned_cols=117 Identities=14% Similarity=0.100 Sum_probs=87.4
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+++.....++.+|||+|||+|.++..++..+ .+++|+|+++.|++.|++++.. .+..++.+.++
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~------------~g~~~i~~~~~ 237 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEH------------YGIEDFFVKRG 237 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHH------------hCCCCCeEEec
Confidence 34444455577899999999999998887776 7899999999999999888752 23345889999
Q ss_pred CccccCCCCCCccEEEEccc------c-ccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 765 SITVFDSRLHGFDIGTCLEV------I-EHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eV------L-EHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
|+.+++...+.||+|++.-- . .|...+....+.+.+.++|+|| .+++.+|..
T Consensus 238 D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 238 DATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred chhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 99998877789999999521 1 1111122345556799999999 677667654
No 84
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.95 E-value=9.1e-09 Score=104.93 Aligned_cols=119 Identities=11% Similarity=0.135 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002345 679 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 758 (933)
Q Consensus 679 y~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~n 758 (933)
...-...+.+.+...++.+|||+|||+|.++..+++.. +..+|+|+|+|+++++.|++++.. .+..+
T Consensus 25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~------------~~~~~ 91 (196)
T PRK07402 25 KREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDR------------FGVKN 91 (196)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH------------hCCCC
Confidence 33333446677766678899999999999999887653 226899999999999999988752 23357
Q ss_pred EEEEEcCccc-cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 759 AVLFDGSITV-FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 759 Vefi~GDaed-Lp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
++++.+|+.+ ++.....+|.++... . .....+.+.+.++|+|| .+++.+++.
T Consensus 92 v~~~~~d~~~~~~~~~~~~d~v~~~~-----~-~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 92 VEVIEGSAPECLAQLAPAPDRVCIEG-----G-RPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred eEEEECchHHHHhhCCCCCCEEEEEC-----C-cCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 9999999865 222223467765421 2 22234445699999999 778877764
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=98.93 E-value=2e-08 Score=99.71 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=82.0
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+.+.+...++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.+++++.... ....++.++++|
T Consensus 15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~----------~~~~~~~~~~~d 81 (188)
T PRK14968 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNN----------IRNNGVEVIRSD 81 (188)
T ss_pred HHHhhhccCCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcC----------CCCcceEEEecc
Confidence 3444444577899999999999999999885 799999999999999988764210 011128889998
Q ss_pred ccccCCCCCCccEEEEccccccCC-------------------hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 766 ITVFDSRLHGFDIGTCLEVIEHME-------------------EDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 766 aedLp~~~~sFDlVVc~eVLEHLp-------------------dD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+.+.. ....||+|+++..+.+-. .+....+.+.+.++|+|| .+++..+.
T Consensus 82 ~~~~~-~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 82 LFEPF-RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred ccccc-cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 87643 344899999875443311 122344566799999999 66665543
No 86
>PRK14967 putative methyltransferase; Provisional
Probab=98.93 E-value=1.9e-08 Score=104.78 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=81.5
Q ss_pred hcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 691 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 691 ~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
...++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.|++++.. .+ .++.++.+|+.+.
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~------------~~-~~~~~~~~d~~~~- 96 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALL------------AG-VDVDVRRGDWARA- 96 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHH------------hC-CeeEEEECchhhh-
Confidence 34467899999999999999998875 25899999999999999887642 12 2588999998763
Q ss_pred CCCCCccEEEEccccccCCh-------------------hHHHHHHHHHHHccCCC-EEEEEecCC-chhHHHH
Q 002345 771 SRLHGFDIGTCLEVIEHMEE-------------------DEASQFGNIVLSSFRPR-ILIVSTPNY-EYNAILQ 823 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLpd-------------------D~l~aL~eeI~rlLKPG-~LIITTPN~-efNs~f~ 823 (933)
.....||+|+++--..+-.. .....+.+.+.++|+|| .+++..+.. .....+.
T Consensus 97 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~ 170 (223)
T PRK14967 97 VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLT 170 (223)
T ss_pred ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHH
Confidence 34568999999743221110 11234555689999999 666544443 3444443
No 87
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.93 E-value=1e-08 Score=105.02 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=81.3
Q ss_pred HHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC-CccEEEEEcC
Q 002345 687 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD-VKSAVLFDGS 765 (933)
Q Consensus 687 ld~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~-~~nVefi~GD 765 (933)
+..+...++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++.. .+ ..++.++.+|
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~------------~g~~~~v~~~~~d 100 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK------------FGVLNNIVLIKGE 100 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH------------hCCCCCeEEEEec
Confidence 4566667889999999999999988876422236899999999999999887652 12 3578999999
Q ss_pred ccccC-CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 766 ITVFD-SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 766 aedLp-~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+.+.. .....||+|++... .. +. ..+.+.+.++|+|| .+++.++.
T Consensus 101 ~~~~l~~~~~~~D~V~~~~~---~~-~~-~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 101 APEILFTINEKFDRIFIGGG---SE-KL-KEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred hhhhHhhcCCCCCEEEECCC---cc-cH-HHHHHHHHHHcCCCcEEEEEeec
Confidence 87642 22368999998542 11 22 23445689999999 66665553
No 88
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.93 E-value=1.4e-08 Score=87.23 Aligned_cols=101 Identities=23% Similarity=0.397 Sum_probs=78.2
Q ss_pred EEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-CCCC
Q 002345 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-RLHG 775 (933)
Q Consensus 697 rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~-~~~s 775 (933)
+|+|+|||.|.++..+++.. ..+++++|+++.+++.+++... .....++.++.+|+.+... ...+
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 66 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAA------------ALLADNVEVLKGDAEELPPEADES 66 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHh------------cccccceEEEEcChhhhccccCCc
Confidence 58999999999999988833 3799999999999999874321 1234578999999988764 5678
Q ss_pred ccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 776 FDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 776 FDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
||+|++..+++++. +....+.+.+.+.++|| .++++
T Consensus 67 ~d~i~~~~~~~~~~-~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 67 FDVIISDPPLHHLV-EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eEEEEEccceeehh-hHHHHHHHHHHHHcCCCCEEEEE
Confidence 99999999999953 34445556699999999 55543
No 89
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.92 E-value=1.7e-08 Score=107.35 Aligned_cols=194 Identities=23% Similarity=0.359 Sum_probs=120.6
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC----------------------
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA---------------------- 750 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~---------------------- 750 (933)
..+..+|||||..|.++..+++..++ ..|+|+||++..++.|++.+....+......
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 36788999999999999999987643 6799999999999999988653221100000
Q ss_pred -C----C---CCCCccEEEEEcCccccCCCCCCccEEEEccccc--cCC--hhHHHHHHHHHHHccCCCEEEEEecCCch
Q 002345 751 -V----P---CTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIE--HME--EDEASQFGNIVLSSFRPRILIVSTPNYEY 818 (933)
Q Consensus 751 -~----P---r~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLE--HLp--dD~l~aL~eeI~rlLKPG~LIITTPN~ef 818 (933)
. | .....+..+...|+. +.....||+|+|..+-- |+. ++-+..|...+.++|.||+++|..|.. |
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQp-W 212 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQP-W 212 (288)
T ss_pred cccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCc-h
Confidence 0 0 001112222222332 23456899999987643 332 344555555699999999888888874 4
Q ss_pred hHHHHhhccCcCCCCCcchhhhccccccCCCcccccCHHHHHHHHHHHHHHcCcEEEEEeecCC-CCCCCCccceeEEEe
Q 002345 819 NAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGS-GDREPGFASQIAVFR 897 (933)
Q Consensus 819 Ns~f~~l~~~g~~eYpdEp~g~~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsVEF~GVG~~-p~~~~Gf~TQIAVF~ 897 (933)
..+..+-. ....+.......+..++.|..|...... |++- ..+++.. .....||..+|-+|+
T Consensus 213 ksY~kaar--------------~~e~~~~ny~~i~lkp~~f~~~l~q~~v--gle~-~e~~~~~~~~~skgf~R~i~~y~ 275 (288)
T KOG2899|consen 213 KSYKKAAR--------------RSEKLAANYFKIFLKPEDFEDWLNQIVV--GLES-VEDLGLIVSAASKGFDRPILLYR 275 (288)
T ss_pred HHHHHHHH--------------HHHHhhcCccceecCHHHHHhhhhhhhh--heee-eccccccccccCccccceeeeee
Confidence 55443310 0112333344456799999999765432 3322 2333322 123689999999999
Q ss_pred cCCCCCCccc
Q 002345 898 SRTPPEEDDL 907 (933)
Q Consensus 898 R~~~~~~~~~ 907 (933)
|+.....+.+
T Consensus 276 Kk~~~~~~~i 285 (288)
T KOG2899|consen 276 KKLHPKTDAI 285 (288)
T ss_pred ccCCCccCcC
Confidence 9776665544
No 90
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.92 E-value=1.6e-08 Score=111.14 Aligned_cols=165 Identities=16% Similarity=0.109 Sum_probs=102.0
Q ss_pred hhHHhhhhcc-ccCCccccccCCchhhHhhhccccccccccccchhhhhhcccCCchHHHHHHHHHH-HhhcCCCCEEEE
Q 002345 623 QVEVVTAQMS-VGQSACFCKELPPQELILAAADDSARTFSLLSSKDRMEQALFSPPLSKQRVEYALQ-HIKESCATTLVD 700 (933)
Q Consensus 623 hLkvlVtq~r-eGqsiff~r~lP~~dlilAAa~Ds~~dl~~Ls~eer~e~~~F~PPLy~qRve~Ild-~L~~~~g~rVLD 700 (933)
.++.++.+|. .|.+++|..- .....+..+. .-..+.+..|.....+..++. .+......+|||
T Consensus 75 ~~~~~~~rr~~~~~Pl~yi~g---------~~~F~g~~f~------v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLD 139 (307)
T PRK11805 75 RILELIERRINERIPAAYLTN---------EAWFCGLEFY------VDERVLVPRSPIAELIEDGFAPWLEDPPVTRILD 139 (307)
T ss_pred HHHHHHHHHHHCCccHHHHcC---------cceEcCcEEE------ECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEE
Confidence 3666677776 5888888722 1111122221 011223333444444444433 233222368999
Q ss_pred EcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCccEEE
Q 002345 701 FGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGT 780 (933)
Q Consensus 701 IGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~sFDlVV 780 (933)
+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++... ....+++++++|+.+.. +...||+|+
T Consensus 140 lG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~-----------~l~~~i~~~~~D~~~~l-~~~~fDlIv 206 (307)
T PRK11805 140 LCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERH-----------GLEDRVTLIESDLFAAL-PGRRYDLIV 206 (307)
T ss_pred EechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh-----------CCCCcEEEEECchhhhC-CCCCccEEE
Confidence 9999999999998765 2368999999999999999887521 11236999999986532 345799999
Q ss_pred Ecc------cc-------ccCCh----------hHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 781 CLE------VI-------EHMEE----------DEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 781 c~e------VL-------EHLpd----------D~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
++- .+ +|-|. +....+.+.+.++|+|| .+++.+.+
T Consensus 207 sNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 207 SNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred ECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 961 11 22221 11235556688999999 66666554
No 91
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.92 E-value=1.8e-08 Score=114.00 Aligned_cols=118 Identities=18% Similarity=0.248 Sum_probs=86.1
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+++++.+......+|||+|||+|.++..+++.+ +..+|+++|+|+.+++.|++++.... .....+++++.
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~---------~~~~~~v~~~~ 287 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNM---------PEALDRCEFMI 287 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC---------cccCceEEEEE
Confidence 456777765556799999999999999998875 34799999999999999998875311 01124789999
Q ss_pred cCccccCCCCCCccEEEEcccccc---CChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEH---MEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEH---LpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
+|+.... ...+||+|+|+--+|. +.++....+.+.+.++|+|| .++|.
T Consensus 288 ~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 288 NNALSGV-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred ccccccC-CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9875432 3458999999765543 34344455666799999999 44444
No 92
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.91 E-value=4.4e-09 Score=110.07 Aligned_cols=114 Identities=15% Similarity=0.184 Sum_probs=85.4
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
.+..+++.+...++.+|||||||+|.++..|++..++...|++||+++..++.|++++.. .+..++.+
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~------------~~~~nv~~ 127 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLAR------------LGIDNVEV 127 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH------------HTTHSEEE
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHH------------hccCceeE
Confidence 445567777778999999999999999998887644446899999999999999998873 24558999
Q ss_pred EEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.++|...-......||.|++......+| ..+.+.|++| .++++.-.
T Consensus 128 ~~gdg~~g~~~~apfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 128 VVGDGSEGWPEEAPFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp EES-GGGTTGGG-SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEESS
T ss_pred EEcchhhccccCCCcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEEcc
Confidence 9999877555567899999999998887 2366789999 66665543
No 93
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.91 E-value=6.8e-09 Score=109.11 Aligned_cols=113 Identities=21% Similarity=0.252 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhhcC--CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 680 KQRVEYALQHIKES--CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 680 ~qRve~Ild~L~~~--~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
..+.+..++.+... ...-|||||||+|.-...|.+.| ...+|||||+.||+.|.++.-
T Consensus 34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~----------------- 93 (270)
T KOG1541|consen 34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVEREL----------------- 93 (270)
T ss_pred HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhh-----------------
Confidence 33444444554433 46789999999999999998887 799999999999999976311
Q ss_pred cEEEEEcCccc-cCCCCCCccEEEEccccccC---------ChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 758 SAVLFDGSITV-FDSRLHGFDIGTCLEVIEHM---------EEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 758 nVefi~GDaed-Lp~~~~sFDlVVc~eVLEHL---------pdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
.-+++.+|+-+ +|++.+.||.|+++..+.++ |...+..|...++.+|++| ..++.
T Consensus 94 egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 94 EGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred hcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 13567777754 88999999999998887655 3344456666799999999 55553
No 94
>PRK04266 fibrillarin; Provisional
Probab=98.91 E-value=1.5e-08 Score=107.21 Aligned_cols=106 Identities=8% Similarity=0.078 Sum_probs=77.8
Q ss_pred hhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 690 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 690 L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
+...++.+|||+|||+|.++..|++..+ ..+|+|+|+++.|++.+.+++.. ..++.++.+|+.+.
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~--------------~~nv~~i~~D~~~~ 132 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE--------------RKNIIPILADARKP 132 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh--------------cCCcEEEECCCCCc
Confidence 5556788999999999999999998742 25899999999999988765431 24789999998752
Q ss_pred C---CCCCCccEEEEccccccCC-hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 770 D---SRLHGFDIGTCLEVIEHME-EDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 770 p---~~~~sFDlVVc~eVLEHLp-dD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
. .....||+|++. ++ ++....+.+++.++|||| .++|+.+-
T Consensus 133 ~~~~~l~~~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 133 ERYAHVVEKVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred chhhhccccCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 1 113469999853 32 233344556799999999 77777653
No 95
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.90 E-value=2.2e-08 Score=111.73 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=84.6
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+.+++.+......+|||+|||+|.++..+++.. +..+|+++|+|+.|++.|++++.. .+ ...+++.
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~------------n~-l~~~~~~ 251 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAA------------NG-LEGEVFA 251 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH------------cC-CCCEEEE
Confidence 345566655455689999999999999999875 235899999999999999887752 12 2356777
Q ss_pred cCccccCCCCCCccEEEEccccccCC---hhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHME---EDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLp---dD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+|+... ..+.||+|+|+-.+|+.. .+....|.+.+.++|+|| .++|...
T Consensus 252 ~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 252 SNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 787542 256899999998887632 233456666799999999 5555443
No 96
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.90 E-value=2.1e-08 Score=106.37 Aligned_cols=121 Identities=18% Similarity=0.173 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 678 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 678 Ly~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
..+.-++.+...+...++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++.. ....
T Consensus 92 ~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~------------~~~~ 158 (275)
T PRK09328 92 ETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKH------------GLGA 158 (275)
T ss_pred CcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHh------------CCCC
Confidence 333444445444444567899999999999999998875 347899999999999999887641 1234
Q ss_pred cEEEEEcCccccCCCCCCccEEEEcc------ccccCChh------------------HHHHHHHHHHHccCCC-EEEEE
Q 002345 758 SAVLFDGSITVFDSRLHGFDIGTCLE------VIEHMEED------------------EASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 758 nVefi~GDaedLp~~~~sFDlVVc~e------VLEHLpdD------------------~l~aL~eeI~rlLKPG-~LIIT 812 (933)
++.++.+|+.+.. ..+.||+|+++- .++.+.++ ....+.+.+.++|+|| .+++.
T Consensus 159 ~i~~~~~d~~~~~-~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 159 RVEFLQGDWFEPL-PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred cEEEEEccccCcC-CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 7999999986532 246899999842 11212111 1134555678999999 66653
No 97
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.89 E-value=1.5e-08 Score=112.35 Aligned_cols=110 Identities=11% Similarity=0.141 Sum_probs=83.7
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
..+++.+...++.+|||||||+|.++..+++..+....|+|+|+++++++.|++++.. .+..++.+++
T Consensus 70 a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~------------~g~~nV~~i~ 137 (322)
T PRK13943 70 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR------------LGIENVIFVC 137 (322)
T ss_pred HHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH------------cCCCcEEEEe
Confidence 3455555556778999999999999999987653224699999999999999887652 2445799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
+|+.+.......||+|++...+++++ + .+.+.|+|| .+++..
T Consensus 138 gD~~~~~~~~~~fD~Ii~~~g~~~ip-~-------~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 138 GDGYYGVPEFAPYDVIFVTVGVDEVP-E-------TWFTQLKEGGRVIVPI 180 (322)
T ss_pred CChhhcccccCCccEEEECCchHHhH-H-------HHHHhcCCCCEEEEEe
Confidence 99877655556899999987777665 2 256789999 666644
No 98
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.88 E-value=1.2e-08 Score=115.55 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=91.8
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+++.+....+..+||||||+|.++..+|+.. +...++|+|+++.+++.|.+++. ..+..++.++++|
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~------------~~gL~NV~~i~~D 180 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIE------------LLNLKNLLIINYD 180 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHH------------HcCCCcEEEEECC
Confidence 3445555566799999999999999999876 44789999999999999988765 2355689999999
Q ss_pred cccc--CCCCCCccEEEEccccccCChh----HHHHHHHHHHHccCCC-EEEEEecCCchhH
Q 002345 766 ITVF--DSRLHGFDIGTCLEVIEHMEED----EASQFGNIVLSSFRPR-ILIVSTPNYEYNA 820 (933)
Q Consensus 766 aedL--p~~~~sFDlVVc~eVLEHLpdD----~l~aL~eeI~rlLKPG-~LIITTPN~efNs 820 (933)
+..+ .++++++|.|++.....|.... ....+.+.++++|+|| .+.+.|-+.+|-.
T Consensus 181 A~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~ 242 (390)
T PRK14121 181 ARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFE 242 (390)
T ss_pred HHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHH
Confidence 9764 3567899999986544332211 0135666799999999 8888887766543
No 99
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.87 E-value=1.9e-08 Score=109.33 Aligned_cols=102 Identities=21% Similarity=0.173 Sum_probs=75.8
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++... .....+.+..++... ...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n-----------~~~~~~~~~~~~~~~--~~~ 223 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELN-----------QVSDRLQVKLIYLEQ--PIE 223 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHc-----------CCCcceEEEeccccc--ccC
Confidence 578999999999999998888763 68999999999999999876521 112246666666432 235
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
++||+|+++.+.+++ ..+...+.++|+|| .++++...
T Consensus 224 ~~fDlVvan~~~~~l-----~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 224 GKADVIVANILAEVI-----KELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred CCceEEEEecCHHHH-----HHHHHHHHHHcCCCcEEEEEeCc
Confidence 689999998654433 34455699999999 77776654
No 100
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.3e-08 Score=104.67 Aligned_cols=108 Identities=13% Similarity=0.165 Sum_probs=92.1
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
..+++.+...++.+|||||||+|..+..|++.. .+|+.||..++..+.|++++. ..+..||.+.+
T Consensus 62 A~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~------------~lg~~nV~v~~ 126 (209)
T COG2518 62 ARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLE------------TLGYENVTVRH 126 (209)
T ss_pred HHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHH------------HcCCCceEEEE
Confidence 345677778899999999999999999999987 599999999999999999886 34666899999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
||...--.....||.|+.......+| +.+.+.|+|| .++++.-
T Consensus 127 gDG~~G~~~~aPyD~I~Vtaaa~~vP--------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 127 GDGSKGWPEEAPYDRIIVTAAAPEVP--------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcccCCCCCCCcCEEEEeeccCCCC--------HHHHHhcccCCEEEEEEc
Confidence 99987555668999999999999998 2366789999 7777665
No 101
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.84 E-value=2.4e-08 Score=106.13 Aligned_cols=95 Identities=22% Similarity=0.286 Sum_probs=69.9
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEEEEEcCccccCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDGSITVFDS 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~-~nVefi~GDaedLp~ 771 (933)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++.. .+. ..+.+..++.
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~------------~~~~~~~~~~~~~~----- 178 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAEL------------NGVELNVYLPQGDL----- 178 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHH------------cCCCceEEEccCCC-----
Confidence 3678999999999999998888763 5699999999999999987652 122 2344444332
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
.||+|+++... +....+.+.+.++|+|| .++++..
T Consensus 179 ---~fD~Vvani~~-----~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 179 ---KADVIVANILA-----NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred ---CcCEEEEcCcH-----HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 79999997543 33345556699999999 7776644
No 102
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.83 E-value=2.9e-08 Score=103.35 Aligned_cols=101 Identities=10% Similarity=0.043 Sum_probs=75.1
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 770 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp-- 770 (933)
.++.+|||||||+|.++..+++..++...|+|||+++ | . ..++++++++|+.+.+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~--------------~~~~v~~i~~D~~~~~~~ 106 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------D--------------PIVGVDFLQGDFRDELVL 106 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------c--------------CCCCcEEEecCCCChHHH
Confidence 4678999999999999999988753346899999998 1 0 1236899999998853
Q ss_pred ------CCCCCccEEEEccccccCChhH---------HHHHHHHHHHccCCC-EEEEEecCC
Q 002345 771 ------SRLHGFDIGTCLEVIEHMEEDE---------ASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 771 ------~~~~sFDlVVc~eVLEHLpdD~---------l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
....+||+|+|..+.++..... ...+.+++.++|+|| .+++.+...
T Consensus 107 ~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 107 KALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred HHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 4567899999988777654211 123456699999999 777756553
No 103
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.83 E-value=6.3e-08 Score=103.57 Aligned_cols=166 Identities=14% Similarity=0.102 Sum_probs=103.7
Q ss_pred hhHHhhhhccccCCccccccCCchhhHhhhccccccccccccchhhhhhcccCCchHHHHHHHHHHHhhcC-CCCEEEEE
Q 002345 623 QVEVVTAQMSVGQSACFCKELPPQELILAAADDSARTFSLLSSKDRMEQALFSPPLSKQRVEYALQHIKES-CATTLVDF 701 (933)
Q Consensus 623 hLkvlVtq~reGqsiff~r~lP~~dlilAAa~Ds~~dl~~Ls~eer~e~~~F~PPLy~qRve~Ild~L~~~-~g~rVLDI 701 (933)
.++.+|.+|..|.+++|..- ...-.+..+. ....+.+..+.....++.++..+... ...+|||+
T Consensus 29 ~~~~~~~rr~~~~Pl~yi~g---------~~~f~g~~~~------v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDl 93 (251)
T TIGR03704 29 ELAAMVDRRVAGLPLEHVLG---------WAEFCGLRIA------VDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDL 93 (251)
T ss_pred HHHHHHHHHHcCCCHHHhcc---------cCeEcCeEEE------ECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEe
Confidence 46777888889999888732 1111111111 01122233344555556665554422 34589999
Q ss_pred cCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--CCCCccEE
Q 002345 702 GCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS--RLHGFDIG 779 (933)
Q Consensus 702 GCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~--~~~sFDlV 779 (933)
|||+|.++..+++..+ ..+|+|+|+|+.+++.|++++.. . +++++++|+.+... ..+.||+|
T Consensus 94 g~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~------------~---~~~~~~~D~~~~l~~~~~~~fDlV 157 (251)
T TIGR03704 94 CCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLAD------------A---GGTVHEGDLYDALPTALRGRVDIL 157 (251)
T ss_pred cCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHH------------c---CCEEEEeechhhcchhcCCCEeEE
Confidence 9999999999886542 25899999999999999987642 1 24788899865321 13579999
Q ss_pred EEcc------ccccCChhH------------------HHHHHHHHHHccCCC-EEEEEecCCchh
Q 002345 780 TCLE------VIEHMEEDE------------------ASQFGNIVLSSFRPR-ILIVSTPNYEYN 819 (933)
Q Consensus 780 Vc~e------VLEHLpdD~------------------l~aL~eeI~rlLKPG-~LIITTPN~efN 819 (933)
+++- .+..++++. ...+.+.+.++|+|| .+++.+......
T Consensus 158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~ 222 (251)
T TIGR03704 158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAP 222 (251)
T ss_pred EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHH
Confidence 9863 222232211 234555678999999 777766654433
No 104
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.82 E-value=4.7e-08 Score=111.64 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=88.3
Q ss_pred hhHHhhhhccccCCccccccCCchhhHhhhccccccccccccchhhhhhcccCCchHHHHHHHHHHHhhcCCCCEEEEEc
Q 002345 623 QVEVVTAQMSVGQSACFCKELPPQELILAAADDSARTFSLLSSKDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFG 702 (933)
Q Consensus 623 hLkvlVtq~reGqsiff~r~lP~~dlilAAa~Ds~~dl~~Ls~eer~e~~~F~PPLy~qRve~Ild~L~~~~g~rVLDIG 702 (933)
.++.++.+|..|.+++|..-. ....+..+. .-....+..|..+..++.+++.+. ++.+|||+|
T Consensus 197 ~~~~~v~RR~~gePlqYIlG~---------~~F~G~~f~------V~p~vLIPRpeTE~LVe~aL~~l~--~~~rVLDLG 259 (423)
T PRK14966 197 RADRLAQRRLNGEPVAYILGV---------REFYGRRFA------VNPNVLIPRPETEHLVEAVLARLP--ENGRVWDLG 259 (423)
T ss_pred HHHHHHHHHHcCCCceeEeee---------eeecCcEEE------eCCCccCCCccHHHHHHHhhhccC--CCCEEEEEe
Confidence 466678899999999987321 111111111 111233344555566666665543 456999999
Q ss_pred CCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-CCCCccEEEE
Q 002345 703 CGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-RLHGFDIGTC 781 (933)
Q Consensus 703 CGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~-~~~sFDlVVc 781 (933)
||+|.++..+++.. +..+|+|+|+|+.|++.|++++.. .+ .+++++++|+.+... ....||+|+|
T Consensus 260 cGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~------------~g-~rV~fi~gDl~e~~l~~~~~FDLIVS 325 (423)
T PRK14966 260 TGSGAVAVTVALER-PDAFVRASDISPPALETARKNAAD------------LG-ARVEFAHGSWFDTDMPSEGKWDIIVS 325 (423)
T ss_pred ChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH------------cC-CcEEEEEcchhccccccCCCccEEEE
Confidence 99999999888653 236899999999999999988652 12 379999999866432 2357999999
Q ss_pred cc
Q 002345 782 LE 783 (933)
Q Consensus 782 ~e 783 (933)
+-
T Consensus 326 NP 327 (423)
T PRK14966 326 NP 327 (423)
T ss_pred CC
Confidence 54
No 105
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.81 E-value=1.5e-08 Score=106.62 Aligned_cols=122 Identities=14% Similarity=0.151 Sum_probs=88.5
Q ss_pred hhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 690 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 690 L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
+....+.+||..|||.|.-+..|+++| .+|+|||+|+.+++.|.+....................+|++++||+.++
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 445567799999999999999999998 79999999999999985432210000000000001234789999999987
Q ss_pred CCCC-CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 770 DSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 770 p~~~-~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+... +.||+|+=...+.-|+++....+.+.+.++|+|| .+++.|.
T Consensus 110 ~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 110 PPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITL 156 (218)
T ss_dssp GGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred ChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 7644 5899999999999999999999999999999999 5333343
No 106
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=3.5e-08 Score=108.28 Aligned_cols=102 Identities=22% Similarity=0.240 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc-EEEEEcCccccCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS-AVLFDGSITVFDSR 772 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~n-Vefi~GDaedLp~~ 772 (933)
++.+|||+|||+|.++...++.|. .+|+|+|+++.+++.|++++.. ++... +.....+.... ..
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~------------N~v~~~~~~~~~~~~~~-~~ 226 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARL------------NGVELLVQAKGFLLLEV-PE 226 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHH------------cCCchhhhcccccchhh-cc
Confidence 789999999999999999999985 7899999999999999988652 22221 22222222222 23
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
...||+|+++- + .+++..+...+.+.++|| .++++-.-
T Consensus 227 ~~~~DvIVANI----L-A~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 227 NGPFDVIVANI----L-AEVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred cCcccEEEehh----h-HHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 36899999985 2 256667777899999999 77776543
No 107
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.77 E-value=5.3e-08 Score=97.28 Aligned_cols=87 Identities=14% Similarity=0.173 Sum_probs=70.8
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.+++++. ...+++++++
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~--------------~~~~v~ii~~ 66 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFA--------------AADNLTVIHG 66 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhc--------------cCCCEEEEEC
Confidence 45566666677899999999999999999885 689999999999999987653 1347999999
Q ss_pred CccccCCCCCCccEEEEccccccCC
Q 002345 765 SITVFDSRLHGFDIGTCLEVIEHME 789 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eVLEHLp 789 (933)
|+.+++.....||.|+++-- .|+.
T Consensus 67 D~~~~~~~~~~~d~vi~n~P-y~~~ 90 (169)
T smart00650 67 DALKFDLPKLQPYKVVGNLP-YNIS 90 (169)
T ss_pred chhcCCccccCCCEEEECCC-cccH
Confidence 99998876667999988644 4554
No 108
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.76 E-value=9.6e-08 Score=111.67 Aligned_cols=165 Identities=15% Similarity=0.126 Sum_probs=105.0
Q ss_pred hhhHHhhhhccccCCccccccCCchhhHhhhccccccccccccchhhhhhcccCCchHHHHHHHHHHHhh----------
Q 002345 622 PQVEVVTAQMSVGQSACFCKELPPQELILAAADDSARTFSLLSSKDRMEQALFSPPLSKQRVEYALQHIK---------- 691 (933)
Q Consensus 622 hhLkvlVtq~reGqsiff~r~lP~~dlilAAa~Ds~~dl~~Ls~eer~e~~~F~PPLy~qRve~Ild~L~---------- 691 (933)
.+++.++.+|..|.+++|.. +.....+.++. .-..+....|-.+.-++.+++.+.
T Consensus 57 ~~~~~~~~rr~~~ePlqYI~---------G~~~F~g~~f~------V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~ 121 (506)
T PRK01544 57 EAFEKLLERRLKHEPIAYIT---------GVKEFYSREFI------VNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQ 121 (506)
T ss_pred HHHHHHHHHHHcCCCHHHHh---------CcCEEcCcEEE------eCCCcccCCCcHHHHHHHHHHHhhhccccccccc
Confidence 34777899999999888872 22222223331 122334444555555666554432
Q ss_pred --------------cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 692 --------------ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 692 --------------~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
..++.+|||+|||+|.++..++... +..+|+|+|+|+.+++.|++++... ....
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~-----------~l~~ 189 (506)
T PRK01544 122 LNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKY-----------EVTD 189 (506)
T ss_pred cccccccccccccccCCCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHc-----------CCcc
Confidence 1134689999999999999887653 2368999999999999999876521 1124
Q ss_pred cEEEEEcCccccCCCCCCccEEEEc--------------cccccCC-------hhH---HHHHHHHHHHccCCC-EEEEE
Q 002345 758 SAVLFDGSITVFDSRLHGFDIGTCL--------------EVIEHME-------EDE---ASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 758 nVefi~GDaedLp~~~~sFDlVVc~--------------eVLEHLp-------dD~---l~aL~eeI~rlLKPG-~LIIT 812 (933)
++.++++|+.+. .....||+|+|+ +++.|-| ++- ...+.+.+.++|+|| .+++.
T Consensus 190 ~v~~~~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 190 RIQIIHSNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred ceeeeecchhhh-CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 689999997652 234579999994 1222322 111 123455678899999 66665
Q ss_pred ec
Q 002345 813 TP 814 (933)
Q Consensus 813 TP 814 (933)
.-
T Consensus 269 ig 270 (506)
T PRK01544 269 IG 270 (506)
T ss_pred EC
Confidence 43
No 109
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.73 E-value=6.4e-08 Score=107.76 Aligned_cols=120 Identities=23% Similarity=0.289 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc----
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF---- 769 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL---- 769 (933)
++.+|||+|||.|.-+.-..+.+ ...++|+||+...|+.|+++......... ... ....-...++.+|....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~-~~~-~~~~f~a~f~~~D~f~~~l~~ 137 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNN-SKQ-YRFDFIAEFIAADCFSESLRE 137 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT--HT-SEECCEEEEEESTTCCSHHHC
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccc-ccc-ccccchhheeccccccchhhh
Confidence 57899999999888655454443 48999999999999999999843221100 000 00112567888887532
Q ss_pred --CCCCCCccEEEEccccccCC--hhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 770 --DSRLHGFDIGTCLEVIEHME--EDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 770 --p~~~~sFDlVVc~eVLEHLp--dD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
......||+|.|...|||.= ++.+..+++++.+.|+|| .+|.|||+.+
T Consensus 138 ~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 138 KLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp TSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred hccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 22235899999999999974 455566788999999999 8888999864
No 110
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.73 E-value=6.2e-08 Score=111.31 Aligned_cols=117 Identities=14% Similarity=0.134 Sum_probs=83.6
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+...+...++.+|||+|||+|..+..+++..+...+|+|+|+++.+++.++++++. .+..++++.++|
T Consensus 242 ~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~------------~g~~~v~~~~~D 309 (445)
T PRK14904 242 ACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA------------LGITIIETIEGD 309 (445)
T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH------------hCCCeEEEEeCc
Confidence 33445556778999999999998887776432225899999999999999988762 344579999999
Q ss_pred ccccCCCCCCccEEEEc------ccc---------------ccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 766 ITVFDSRLHGFDIGTCL------EVI---------------EHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 766 aedLp~~~~sFDlVVc~------eVL---------------EHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+..+. ....||+|++- .++ +++...+ ..+.+.+.++|+|| .++++|...
T Consensus 310 a~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q-~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 310 ARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQ-AELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred ccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHH-HHHHHHHHHhcCCCcEEEEEeCCC
Confidence 98765 34689999961 122 2222122 23455699999999 777777543
No 111
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.73 E-value=1.6e-07 Score=96.95 Aligned_cols=116 Identities=13% Similarity=0.138 Sum_probs=92.9
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 681 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 681 qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
.-....+..|...++..++|||||+|..+..++..+ +..+|+++|-++++++..++++.+ .+.+|+.
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~-p~~~v~AIe~~~~a~~~~~~N~~~------------fg~~n~~ 87 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAG-PSGRVIAIERDEEALELIERNAAR------------FGVDNLE 87 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhC-CCceEEEEecCHHHHHHHHHHHHH------------hCCCcEE
Confidence 334456677888899999999999999999999655 568999999999999999888763 3578999
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 761 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 761 fi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
++.||+.+.-.....||+|+.... ..++ .+.+.+...|||| .+++..-.
T Consensus 88 vv~g~Ap~~L~~~~~~daiFIGGg-~~i~-----~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 88 VVEGDAPEALPDLPSPDAIFIGGG-GNIE-----EILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred EEeccchHhhcCCCCCCEEEECCC-CCHH-----HHHHHHHHHcCcCCeEEEEeec
Confidence 999999875444448999999988 6665 3445588899999 77775544
No 112
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.7e-08 Score=93.44 Aligned_cols=75 Identities=28% Similarity=0.420 Sum_probs=71.8
Q ss_pred ceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 565 GIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 565 ~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
+|..+.|..+|+-.||++|..+.|||+..|.+ |+++++.++++.+|.|.||.+.|+.-.+.-|+||++|+-+...
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~d-G~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLt 76 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQD-GKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLT 76 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecC-CcEeecccccCCCeeEEecCcceeechhhcchhccccccceee
Confidence 47889999999999999999999999999998 9999999999999999999999999999999999999988766
No 113
>PTZ00146 fibrillarin; Provisional
Probab=98.70 E-value=8.6e-07 Score=97.36 Aligned_cols=103 Identities=13% Similarity=0.054 Sum_probs=75.5
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 770 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp- 770 (933)
..++.+|||+|||+|.++..+++..++...|++||+++.|++...+... ...+|.++.+|+....
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak--------------~r~NI~~I~~Da~~p~~ 195 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK--------------KRPNIVPIIEDARYPQK 195 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh--------------hcCCCEEEECCccChhh
Confidence 4577899999999999999999875333689999999986654443321 1147889999986531
Q ss_pred --CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 771 --SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 771 --~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
.....||+|++... . +++...+..++.++|||| .++|.
T Consensus 196 y~~~~~~vDvV~~Dva---~-pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 196 YRMLVPMVDVIFADVA---Q-PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred hhcccCCCCEEEEeCC---C-cchHHHHHHHHHHhccCCCEEEEE
Confidence 12357999999764 2 355556666799999999 77774
No 114
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.69 E-value=1.4e-07 Score=108.21 Aligned_cols=120 Identities=12% Similarity=0.091 Sum_probs=88.5
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
..+...+...++.+|||+|||.|..+..+++..+...+|+|+|+++.+++.+++++. +.+..++++++
T Consensus 242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~------------r~g~~~v~~~~ 309 (434)
T PRK14901 242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQ------------RLGLKSIKILA 309 (434)
T ss_pred HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHH------------HcCCCeEEEEe
Confidence 344455666678899999999999998888753223589999999999999998876 23555799999
Q ss_pred cCccccC----CCCCCccEEEEc------cccccCChh-------H-------HHHHHHHHHHccCCC-EEEEEecC
Q 002345 764 GSITVFD----SRLHGFDIGTCL------EVIEHMEED-------E-------ASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 764 GDaedLp----~~~~sFDlVVc~------eVLEHLpdD-------~-------l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+|+.+++ ...+.||.|++. .++.|-++. . ...+.+++.++|||| .++.+|-.
T Consensus 310 ~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 310 ADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred CChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9998765 334689999962 466655521 1 234455699999999 66666643
No 115
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.68 E-value=8.6e-08 Score=103.00 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=83.1
Q ss_pred HhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc
Q 002345 689 HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 768 (933)
Q Consensus 689 ~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaed 768 (933)
.+...++.+|||+|||.|..+..+++..+....|+|+|+++.+++.+++++.. .+..++.++++|+..
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~------------~g~~~v~~~~~D~~~ 133 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR------------CGVLNVAVTNFDGRV 133 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH------------cCCCcEEEecCCHHH
Confidence 44556788999999999999988877532225899999999999999988762 344579999999887
Q ss_pred cCCCCCCccEEEE------ccccccCC---------------hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 769 FDSRLHGFDIGTC------LEVIEHME---------------EDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 769 Lp~~~~sFDlVVc------~eVLEHLp---------------dD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
++.....||+|++ ..++.+-+ ..+ ..+.+.+.++|||| .++.+|-.
T Consensus 134 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q-~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 134 FGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQ-KELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred hhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHH-HHHHHHHHHhcCCCCEEEEEeCC
Confidence 6555567999986 22333222 112 23455689999998 77777653
No 116
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.64 E-value=5.6e-08 Score=103.47 Aligned_cols=107 Identities=12% Similarity=0.141 Sum_probs=75.3
Q ss_pred HHHHHHhhcCCCC-EEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 684 EYALQHIKESCAT-TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 684 e~Ild~L~~~~g~-rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
+++........+. .++|+|||+|..++.++.+. .+|+|+|+|++||+.|++.-.. ........+.
T Consensus 22 dw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~-----------~y~~t~~~ms 87 (261)
T KOG3010|consen 22 DWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPV-----------TYCHTPSTMS 87 (261)
T ss_pred HHHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCc-----------ccccCCcccc
Confidence 4444444444443 89999999998888888886 8999999999999999763210 0011122333
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC
Q 002345 763 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 807 (933)
Q Consensus 763 ~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG 807 (933)
..+..++.-.+++.|+|+|...+|++.. ..|.+++.|+||+.
T Consensus 88 ~~~~v~L~g~e~SVDlI~~Aqa~HWFdl---e~fy~~~~rvLRk~ 129 (261)
T KOG3010|consen 88 SDEMVDLLGGEESVDLITAAQAVHWFDL---ERFYKEAYRVLRKD 129 (261)
T ss_pred ccccccccCCCcceeeehhhhhHHhhch---HHHHHHHHHHcCCC
Confidence 3344444445789999999999999983 35556799999986
No 117
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.63 E-value=1.4e-07 Score=103.76 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=71.1
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++++|||+|||+|.++...++.|. .+|+|+|+++.+++.|++++..+ +-..++.+. ...+. .
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N-----------~~~~~~~v~--~~~~~--~ 222 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELN-----------GVEDRIEVS--LSEDL--V 222 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHT-----------T-TTCEEES--CTSCT--C
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHc-----------CCCeeEEEE--Eeccc--c
Confidence 3678999999999999999999984 78999999999999999886521 111234332 22222 2
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
...||+|+++-. .+.+..+...+.++|+|| .++++-.
T Consensus 223 ~~~~dlvvANI~-----~~vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 223 EGKFDLVVANIL-----ADVLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp CS-EEEEEEES------HHHHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred cccCCEEEECCC-----HHHHHHHHHHHHHhhCCCCEEEEccc
Confidence 378999999754 355556666789999999 6666543
No 118
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.63 E-value=2.6e-07 Score=101.59 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=66.6
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++.. .+..+++|++
T Consensus 163 ~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~------------~~l~~v~~~~ 227 (315)
T PRK03522 163 ATARDWVRELPPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAE------------LGLTNVQFQA 227 (315)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHH------------cCCCceEEEE
Confidence 334444444457899999999999999999976 6999999999999999887652 2445799999
Q ss_pred cCccccCC-CCCCccEEEEc
Q 002345 764 GSITVFDS-RLHGFDIGTCL 782 (933)
Q Consensus 764 GDaedLp~-~~~sFDlVVc~ 782 (933)
+|+.++.. ....||+|++.
T Consensus 228 ~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 228 LDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred cCHHHHHHhcCCCCeEEEEC
Confidence 99987543 23579999987
No 119
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.62 E-value=3e-07 Score=105.63 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=84.5
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+...+...++.+|||+|||+|..+..+++..+.-.+|+|+|+++.+++.+++++.. .+..++++.++|
T Consensus 229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r------------~g~~~v~~~~~D 296 (431)
T PRK14903 229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR------------LKLSSIEIKIAD 296 (431)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH------------cCCCeEEEEECc
Confidence 34455566788999999999999888887532226899999999999999988762 344578999999
Q ss_pred ccccC-CCCCCccEEEE------ccccccCC-------hh-------HHHHHHHHHHHccCCC-EEEEEecC
Q 002345 766 ITVFD-SRLHGFDIGTC------LEVIEHME-------ED-------EASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 766 aedLp-~~~~sFDlVVc------~eVLEHLp-------dD-------~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+..++ ...+.||.|++ .+++.+-+ .. ....+.+.+.++|+|| .++.+|..
T Consensus 297 a~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 297 AERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred hhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 98765 33567999996 23333222 11 1123345689999999 77776654
No 120
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.62 E-value=1.5e-07 Score=93.97 Aligned_cols=82 Identities=18% Similarity=0.128 Sum_probs=64.7
Q ss_pred EEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHH
Q 002345 723 VGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLS 802 (933)
Q Consensus 723 tGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~r 802 (933)
+|+|+|++||+.|+++..... .....+++++++|+.++++.+++||+|++..+++|++ +....+. ++.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~---------~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-d~~~~l~-ei~r 69 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKA---------RSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-DRLRAMK-EMYR 69 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccc---------ccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-CHHHHHH-HHHH
Confidence 599999999999987643100 1123479999999999999888999999999999998 6666665 5999
Q ss_pred ccCCC-EEEEEecC
Q 002345 803 SFRPR-ILIVSTPN 815 (933)
Q Consensus 803 lLKPG-~LIITTPN 815 (933)
+|||| .++|....
T Consensus 70 vLkpGG~l~i~d~~ 83 (160)
T PLN02232 70 VLKPGSRVSILDFN 83 (160)
T ss_pred HcCcCeEEEEEECC
Confidence 99999 66655443
No 121
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.60 E-value=3e-07 Score=105.57 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002345 680 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759 (933)
Q Consensus 680 ~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV 759 (933)
...++.+++.+...++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.|++++.. .+..++
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~------------~~~~~v 347 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARR------------NGLDNV 347 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHH------------cCCCce
Confidence 4455666666665677899999999999999999886 6899999999999999987652 234579
Q ss_pred EEEEcCccccC----CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 760 VLFDGSITVFD----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 760 efi~GDaedLp----~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
+++++|+.+.. +....||+|++.---.-+ ....+.+.+ ++|+ .++|+.
T Consensus 348 ~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~-----~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 348 TFYHANLEEDFTDQPWALGGFDKVLLDPPRAGA-----AEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred EEEEeChHHhhhhhhhhcCCCCEEEECcCCcCh-----HHHHHHHHh-cCCCeEEEEEe
Confidence 99999987532 234579999874211111 122233444 5777 667765
No 122
>PRK00811 spermidine synthase; Provisional
Probab=98.60 E-value=3.4e-07 Score=99.58 Aligned_cols=111 Identities=18% Similarity=0.188 Sum_probs=79.3
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-C
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-S 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp-~ 771 (933)
..+++||+||||+|..+..++++. ...+|++||+++.+++.|++.+...... ....++++++.+|+...- .
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~-------~~~d~rv~v~~~Da~~~l~~ 146 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGG-------AYDDPRVELVIGDGIKFVAE 146 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccc-------cccCCceEEEECchHHHHhh
Confidence 357899999999999999998874 2478999999999999999876521100 113568999999987643 2
Q ss_pred CCCCccEEEEccccccCChhHH--HHHHHHHHHccCCCEEEE
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEA--SQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l--~aL~eeI~rlLKPG~LII 811 (933)
..+.||+|++...-.+.+...+ ..|.+.+.+.|+||++++
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv 188 (283)
T PRK00811 147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFV 188 (283)
T ss_pred CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 3568999998654333221211 344456999999995554
No 123
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.60 E-value=4e-07 Score=104.07 Aligned_cols=120 Identities=16% Similarity=0.176 Sum_probs=86.5
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc-cEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK-SAVLF 762 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~-nVefi 762 (933)
.++...+...++.+|||+|||.|..+..+++..+ ..+|+|+|+++.+++.++++++. .+.. .+.+.
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r------------~g~~~~v~~~ 294 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKR------------LGLTIKAETK 294 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHH------------cCCCeEEEEe
Confidence 3455666667789999999999999988887542 36899999999999999988763 1222 34557
Q ss_pred EcCccccCC--CCCCccEEEE------ccccccCChh--------------HHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 763 DGSITVFDS--RLHGFDIGTC------LEVIEHMEED--------------EASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 763 ~GDaedLp~--~~~sFDlVVc------~eVLEHLpdD--------------~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
.+|....+. ....||.|++ .+++.+.++- ....+.+.+.++|||| .++++|...
T Consensus 295 ~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 295 DGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred ccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 777765443 4568999995 3567766521 0134455699999999 777777654
No 124
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.60 E-value=2.5e-07 Score=106.25 Aligned_cols=119 Identities=14% Similarity=0.130 Sum_probs=84.5
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+...+...++.+|||+|||+|..+..+++..++..+|+|+|+++.+++.+++++.. .+..+++++++
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~------------~g~~~v~~~~~ 308 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR------------LGLTNIETKAL 308 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCeEEEEeC
Confidence 344555556778999999999999998887532236899999999999999988752 34456999999
Q ss_pred CccccCCC-CCCccEEEEc------cccccCCh-------hH-------HHHHHHHHHHccCCC-EEEEEecC
Q 002345 765 SITVFDSR-LHGFDIGTCL------EVIEHMEE-------DE-------ASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 765 DaedLp~~-~~sFDlVVc~------eVLEHLpd-------D~-------l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
|+.++... .+.||+|++. .++.|-++ .. ...+.+.+.++|||| .++.+|..
T Consensus 309 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 309 DARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 99875421 2689999973 23333221 11 123455689999999 66666644
No 125
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.60 E-value=4.6e-07 Score=103.67 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=82.9
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+...+...++.+|||+|||+|..+..+++..+. .+|+|+|+++.+++.+++++.. .+. +++++++
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~------------~g~-~~~~~~~ 300 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQR------------LGL-KATVIVG 300 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHH------------cCC-CeEEEEc
Confidence 3445556667889999999999999999887522 5899999999999999988752 222 4789999
Q ss_pred CccccCC--CCCCccEEEE----cc--ccccCC-------hhH-------HHHHHHHHHHccCCC-EEEEEec
Q 002345 765 SITVFDS--RLHGFDIGTC----LE--VIEHME-------EDE-------ASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 765 DaedLp~--~~~sFDlVVc----~e--VLEHLp-------dD~-------l~aL~eeI~rlLKPG-~LIITTP 814 (933)
|+.+++. ...+||.|++ +. ++.|-+ +.. ...+.+.+.++|||| .++++|.
T Consensus 301 D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 301 DARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 9987542 3467999994 32 222211 111 124555689999999 7777774
No 126
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.60 E-value=8.8e-07 Score=93.96 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=79.0
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+++...+...++++|||||||+|.-+..+++.-++..+|+++|+++++++.|++++... +...+++++.
T Consensus 58 ~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~-----------gl~~~i~~~~ 126 (234)
T PLN02781 58 LFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA-----------GVDHKINFIQ 126 (234)
T ss_pred HHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEEE
Confidence 34444445557889999999999977777654222369999999999999999987631 1234799999
Q ss_pred cCccccCC------CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 764 GSITVFDS------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 764 GDaedLp~------~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
||+.+.-. ....||+|++-.- . +....+.+.+.++|+||.+++.
T Consensus 127 gda~~~L~~l~~~~~~~~fD~VfiDa~----k-~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 127 SDALSALDQLLNNDPKPEFDFAFVDAD----K-PNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred ccHHHHHHHHHhCCCCCCCCEEEECCC----H-HHHHHHHHHHHHhcCCCeEEEE
Confidence 99976311 1358999987422 2 2233445568999999954443
No 127
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.59 E-value=1.9e-08 Score=106.24 Aligned_cols=105 Identities=21% Similarity=0.322 Sum_probs=77.3
Q ss_pred HhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc
Q 002345 689 HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 768 (933)
Q Consensus 689 ~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaed 768 (933)
.+....-.++||+|||||.....|.... .+++|||||+.||++|.++- . --.+.++++..
T Consensus 120 ~~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg---------------~--YD~L~~Aea~~ 179 (287)
T COG4976 120 KADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKG---------------L--YDTLYVAEAVL 179 (287)
T ss_pred hccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhcc---------------c--hHHHHHHHHHH
Confidence 3333346899999999999999888775 78999999999999997641 1 11344455443
Q ss_pred cC--CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 769 FD--SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 769 Lp--~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+- .....||+|++..|+.++. +-...|. .+.+.|+|| .+.+++-.
T Consensus 180 Fl~~~~~er~DLi~AaDVl~YlG-~Le~~~~-~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 180 FLEDLTQERFDLIVAADVLPYLG-ALEGLFA-GAAGLLAPGGLFAFSVET 227 (287)
T ss_pred HhhhccCCcccchhhhhHHHhhc-chhhHHH-HHHHhcCCCceEEEEecc
Confidence 22 3457899999999999998 4444554 489999999 66666544
No 128
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.58 E-value=1.8e-06 Score=98.39 Aligned_cols=139 Identities=15% Similarity=0.093 Sum_probs=94.5
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC--ccEEEEEcCccccCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV--KSAVLFDGSITVFDS 771 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~--~nVefi~GDaedLp~ 771 (933)
++.+|||+|||+|.++..++..+. .+|++||+|+.+++.|++++.. .+. .+++++++|+.+...
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~------------Ngl~~~~v~~i~~D~~~~l~ 285 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVEL------------NKLDLSKAEFVRDDVFKLLR 285 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHH------------cCCCCCcEEEEEccHHHHHH
Confidence 578999999999999877665542 6899999999999999988752 222 379999999976421
Q ss_pred ----CCCCccEEEEccccccCCh-------hHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCcCCCCCcchhhh
Q 002345 772 ----RLHGFDIGTCLEVIEHMEE-------DEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQL 840 (933)
Q Consensus 772 ----~~~sFDlVVc~eVLEHLpd-------D~l~aL~eeI~rlLKPG~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~ 840 (933)
....||+|++.------.. .....+.+.+.++|+||+++++.-|+.+
T Consensus 286 ~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~---------------------- 343 (396)
T PRK15128 286 TYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL---------------------- 343 (396)
T ss_pred HHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc----------------------
Confidence 2457999998622100000 0122333457899999966665545321
Q ss_pred ccccccCCCcccccCHHHHHHHHHHHHHHcCcEEEEEeecC
Q 002345 841 QSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGG 881 (933)
Q Consensus 841 ~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsVEF~GVG~ 881 (933)
.+.++|......-+...|..+++.+...
T Consensus 344 -------------~~~~~f~~~v~~aa~~~~~~~~~l~~~~ 371 (396)
T PRK15128 344 -------------MTSDLFQKIIADAAIDAGRDVQFIEQFR 371 (396)
T ss_pred -------------CCHHHHHHHHHHHHHHcCCeEEEEEEcC
Confidence 2556777777777777777776655444
No 129
>PHA03411 putative methyltransferase; Provisional
Probab=98.56 E-value=5.7e-07 Score=98.06 Aligned_cols=97 Identities=20% Similarity=0.310 Sum_probs=71.0
Q ss_pred hcccCCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC
Q 002345 671 QALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA 750 (933)
Q Consensus 671 ~~~F~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~ 750 (933)
...|.|.-.... ++. ......+|||+|||+|.++..++++.+ ..+|+|+|+++.|++.|++++
T Consensus 46 G~FfTP~~i~~~--f~~---~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~----------- 108 (279)
T PHA03411 46 GAFFTPEGLAWD--FTI---DAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL----------- 108 (279)
T ss_pred eeEcCCHHHHHH--HHh---ccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-----------
Confidence 445666544322 222 223457999999999999888876531 268999999999999997642
Q ss_pred CCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChh
Q 002345 751 VPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEED 791 (933)
Q Consensus 751 ~Pr~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD 791 (933)
++++++++|+.++.. ...||+|+++--+.|++..
T Consensus 109 ------~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 109 ------PEAEWITSDVFEFES-NEKFDVVISNPPFGKINTT 142 (279)
T ss_pred ------cCCEEEECchhhhcc-cCCCcEEEEcCCccccCch
Confidence 267899999988653 4689999999988887643
No 130
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.54 E-value=4e-07 Score=97.81 Aligned_cols=124 Identities=18% Similarity=0.201 Sum_probs=89.4
Q ss_pred HHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc
Q 002345 687 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 766 (933)
Q Consensus 687 ld~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDa 766 (933)
..........+|||+|||+|.+...++++.. ..+++|||+++++.+.|+++++- .....+++++++|+
T Consensus 37 ~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~l-----------n~l~~ri~v~~~Di 104 (248)
T COG4123 37 AAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVAL-----------NPLEERIQVIEADI 104 (248)
T ss_pred HhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHh-----------CcchhceeEehhhH
Confidence 3444555688999999999999999999853 37999999999999999988752 22456899999999
Q ss_pred cccCC--CCCCccEEEEcccc----------------ccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHH
Q 002345 767 TVFDS--RLHGFDIGTCLEVI----------------EHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAIL 822 (933)
Q Consensus 767 edLp~--~~~sFDlVVc~eVL----------------EHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f 822 (933)
.++.. ...+||+|+|+==. +|...-..+.+.+...++|||| .+.+.-|......++
T Consensus 105 ~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~ 179 (248)
T COG4123 105 KEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEII 179 (248)
T ss_pred HHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHH
Confidence 88654 23469999995321 2222233456677789999999 555555543333333
No 131
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.53 E-value=3.8e-07 Score=92.55 Aligned_cols=100 Identities=15% Similarity=0.239 Sum_probs=68.5
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 770 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp-- 770 (933)
.++.+|||+|||+|.++..+++......+|+|+|+++.+ . .+++.++++|+.+.+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~-----------------~~~i~~~~~d~~~~~~~ 87 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P-----------------IENVDFIRGDFTDEEVL 87 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c-----------------CCCceEEEeeCCChhHH
Confidence 467899999999999998887754223579999999854 1 125778888887643
Q ss_pred ------CCCCCccEEEEccc--------cccCCh-hHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 771 ------SRLHGFDIGTCLEV--------IEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 771 ------~~~~sFDlVVc~eV--------LEHLpd-D~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
....+||+|++... ++|+.. .....+.+.+.++|+|| .+++....
T Consensus 88 ~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 88 NKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred HHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 23567999998643 223221 11234456699999999 66664443
No 132
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=9.4e-07 Score=94.97 Aligned_cols=121 Identities=16% Similarity=0.177 Sum_probs=97.7
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002345 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~ 756 (933)
++|..-..+|...+...++++|||.|.|+|.++..|+..-++..+|+.+|+.++.++.|++++... +.
T Consensus 77 iIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~------------~l 144 (256)
T COG2519 77 IIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF------------GL 144 (256)
T ss_pred eecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh------------cc
Confidence 344445567888888899999999999999999999975445679999999999999999998742 22
Q ss_pred c-cEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 757 K-SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 757 ~-nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
. ++++..+|+.+....+ .||+|+. -++ ++-..+. .+.+.|+|| .+++-+|+.+
T Consensus 145 ~d~v~~~~~Dv~~~~~~~-~vDav~L-----Dmp-~PW~~le-~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 145 GDRVTLKLGDVREGIDEE-DVDAVFL-----DLP-DPWNVLE-HVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred ccceEEEecccccccccc-ccCEEEE-----cCC-ChHHHHH-HHHHHhCCCcEEEEEcCCHH
Confidence 2 3899999998876655 8999987 366 5656665 499999999 8888889854
No 133
>PLN02366 spermidine synthase
Probab=98.50 E-value=1.2e-06 Score=96.73 Aligned_cols=110 Identities=16% Similarity=0.124 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~- 771 (933)
..+++||+||||.|.++..++++. +..+|+.||+++.+++.|++.+..... ....++++++.+|+...-.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~--------~~~dpRv~vi~~Da~~~l~~ 160 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAV--------GFDDPRVNLHIGDGVEFLKN 160 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhcc--------ccCCCceEEEEChHHHHHhh
Confidence 457899999999999999999885 357899999999999999987642100 1235689999999865321
Q ss_pred -CCCCccEEEEccccccCChhH--HHHHHHHHHHccCCCEEEE
Q 002345 772 -RLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 772 -~~~sFDlVVc~eVLEHLpdD~--l~aL~eeI~rlLKPG~LII 811 (933)
..+.||+|++-..-.+.+... ...|.+.+.+.|+||++++
T Consensus 161 ~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv 203 (308)
T PLN02366 161 APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVC 203 (308)
T ss_pred ccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 246799999865433332111 1244556999999996554
No 134
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.1e-06 Score=96.63 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=83.5
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+.+++.+......+|||+|||.|.+...|++.. +..+++-+|++..+|+.|++++.. ++..+..++.
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~------------N~~~~~~v~~ 214 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAA------------NGVENTEVWA 214 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHH------------cCCCccEEEE
Confidence 567788877766799999999999999999987 468999999999999999998763 2334446777
Q ss_pred cCccccCCCCCCccEEEEccccccCC---hhHHHHHHHHHHHccCCC
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHME---EDEASQFGNIVLSSFRPR 807 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLp---dD~l~aL~eeI~rlLKPG 807 (933)
.|+.+... .+||+|+|+==||-=. .+....+.+...+.|++|
T Consensus 215 s~~~~~v~--~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 215 SNLYEPVE--GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred eccccccc--ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccC
Confidence 77765433 2899999986665322 222336666799999999
No 135
>PRK04457 spermidine synthase; Provisional
Probab=98.47 E-value=9.7e-07 Score=95.19 Aligned_cols=110 Identities=14% Similarity=0.151 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL-p~ 771 (933)
..+.+|||||||.|.++..+++.. +..++++||+++++++.|++.+.. ....++++++.+|+.+. ..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~-----------~~~~~rv~v~~~Da~~~l~~ 132 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFEL-----------PENGERFEVIEADGAEYIAV 132 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCC-----------CCCCCceEEEECCHHHHHHh
Confidence 356799999999999999888765 347899999999999999887531 11245899999998653 22
Q ss_pred CCCCccEEEEcccc-ccCChhH-HHHHHHHHHHccCCC-EEEEEec
Q 002345 772 RLHGFDIGTCLEVI-EHMEEDE-ASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 772 ~~~sFDlVVc~eVL-EHLpdD~-l~aL~eeI~rlLKPG-~LIITTP 814 (933)
...+||+|++...- ..++... ...|.+.+.+.|+|| .+++...
T Consensus 133 ~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 133 HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 24589999974211 1122110 134555699999999 6666443
No 136
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=8.3e-07 Score=96.79 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=57.5
Q ss_pred EEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCc
Q 002345 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGF 776 (933)
Q Consensus 697 rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~sF 776 (933)
+|||+|||+|..+..++... +..+|+|+|+|+.+++.|++++.. .+..++.++++|+.+.- .+.|
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~------------~~l~~~~~~~~dlf~~~--~~~f 177 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAER------------NGLVRVLVVQSDLFEPL--RGKF 177 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHH------------cCCccEEEEeeeccccc--CCce
Confidence 79999999999999999987 346999999999999999988762 23356777777765432 2389
Q ss_pred cEEEEc
Q 002345 777 DIGTCL 782 (933)
Q Consensus 777 DlVVc~ 782 (933)
|+|+|+
T Consensus 178 DlIVsN 183 (280)
T COG2890 178 DLIVSN 183 (280)
T ss_pred eEEEeC
Confidence 999995
No 137
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.44 E-value=8.5e-07 Score=95.03 Aligned_cols=88 Identities=13% Similarity=0.190 Sum_probs=70.1
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
-.+.+++.+...++.+|||||||+|.++..|++.+ .+|+|+|+++.|++.+++++. ...++++
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~--------------~~~~v~i 79 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEI--------------AAGNVEI 79 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhc--------------cCCCEEE
Confidence 34556666666678899999999999999999986 689999999999999987653 1347999
Q ss_pred EEcCccccCCCCCCccEEEEccccccCC
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEVIEHME 789 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eVLEHLp 789 (933)
+++|+.+++++ .||.|+++--. ++.
T Consensus 80 i~~D~~~~~~~--~~d~Vv~NlPy-~i~ 104 (258)
T PRK14896 80 IEGDALKVDLP--EFNKVVSNLPY-QIS 104 (258)
T ss_pred EEeccccCCch--hceEEEEcCCc-ccC
Confidence 99999887653 58999987553 444
No 138
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.44 E-value=1.2e-06 Score=91.89 Aligned_cols=106 Identities=16% Similarity=0.174 Sum_probs=81.5
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+.......+..+|||||+|.|.++..+++.. |.-+++.+|. +..++.+++ ..++++..|
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~------------------~~rv~~~~g 150 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE------------------ADRVEFVPG 150 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH------------------TTTEEEEES
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc------------------ccccccccc
Confidence 34444455566899999999999999999876 3468999997 888888865 248999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC---EEEEEe
Q 002345 765 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR---ILIVST 813 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG---~LIITT 813 (933)
|+. -+.+ . +|++++..+||+.+++....+.+++++.|+|| .++|..
T Consensus 151 d~f-~~~P-~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 151 DFF-DPLP-V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp -TT-TCCS-S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred cHH-hhhc-c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 998 3333 3 99999999999999988888889999999976 555543
No 139
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.42 E-value=7.3e-07 Score=96.29 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=65.9
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
.+.+++.+...++.+|||||||+|.++..|++.+ .+|+|+|+++.|++.+++++. . .+++++
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~--------------~-~~v~~i 92 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFA--------------E-DNLTII 92 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhc--------------c-CceEEE
Confidence 3456666666678899999999999999999987 589999999999999977542 1 479999
Q ss_pred EcCccccCCCCCCccEEEEcc
Q 002345 763 DGSITVFDSRLHGFDIGTCLE 783 (933)
Q Consensus 763 ~GDaedLp~~~~sFDlVVc~e 783 (933)
++|+.+++.....+|.|+++-
T Consensus 93 ~~D~~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 93 EGDALKVDLSELQPLKVVANL 113 (272)
T ss_pred EChhhcCCHHHcCcceEEEeC
Confidence 999998765432257777763
No 140
>PHA03412 putative methyltransferase; Provisional
Probab=98.42 E-value=1.9e-06 Score=92.31 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=72.7
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCC--CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPT--ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~--~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
.+.+|||+|||+|.++..+++... +..+|+|||+++.+++.|++++ .++.++++|+...+.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----------------~~~~~~~~D~~~~~~ 111 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----------------PEATWINADALTTEF 111 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----------------cCCEEEEcchhcccc
Confidence 467999999999999998876410 1258999999999999997642 257899999987654
Q ss_pred CCCCccEEEEccccc----------cCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 772 RLHGFDIGTCLEVIE----------HMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 772 ~~~sFDlVVc~eVLE----------HLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
...||+|+++==.. |-.......|.+.+.++++||.+|++
T Consensus 112 -~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP 161 (241)
T PHA03412 112 -DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIP 161 (241)
T ss_pred -cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeC
Confidence 46899999953221 11112234455667889999976553
No 141
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.41 E-value=2.7e-06 Score=91.73 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=76.4
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL-p~ 771 (933)
..+++||+||||+|.++..+++.. +..+++++|+++++++.|++.+..... ....+++++..+|.... ..
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~--------~~~~~~v~i~~~D~~~~l~~ 141 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG--------SYDDPRVDLQIDDGFKFLAD 141 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc--------cccCCceEEEECchHHHHHh
Confidence 356699999999999999888875 347899999999999999887642110 11345788888887652 22
Q ss_pred CCCCccEEEEccccccCChhH--HHHHHHHHHHccCCCEEEEE
Q 002345 772 RLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~--l~aL~eeI~rlLKPG~LIIT 812 (933)
..+.||+|++...-..-+... ...+.+.+.+.|+||++++.
T Consensus 142 ~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~ 184 (270)
T TIGR00417 142 TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVA 184 (270)
T ss_pred CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEE
Confidence 246899999865422111111 13444569999999944443
No 142
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.41 E-value=1.1e-06 Score=92.83 Aligned_cols=147 Identities=16% Similarity=0.194 Sum_probs=96.4
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
...++||.|+|.|+.+..|.-.. +.+|--||+.+..++.|++.+.. ....-.++++..++++.+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~------------~~~~v~~~~~~gLQ~f~P~~ 120 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGK------------DNPRVGEFYCVGLQDFTPEE 120 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCC------------GGCCEEEEEES-GGG----T
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcc------------cCCCcceEEecCHhhccCCC
Confidence 45789999999999998775433 48999999999999999876542 12234689999999988777
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCcCCCCCcchhhhccccccCCCcccc
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFE 853 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~~~fRh~DHkFe 853 (933)
..||+|++-+++-|+.++++-.|.+.+...|+|+++||.--|..-. + ...+-..|....
T Consensus 121 ~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~---------~------------~~~~D~~DsSvT 179 (218)
T PF05891_consen 121 GKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSS---------G------------FDEFDEEDSSVT 179 (218)
T ss_dssp T-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESS---------S------------EEEEETTTTEEE
T ss_pred CcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCC---------C------------CcccCCccCeee
Confidence 8999999999999999999988888899999999555543332100 0 012223344433
Q ss_pred cCHHHHHHHHHHHHHHcCcEEEEEee
Q 002345 854 WTRDQFNCWATELAARHNYSVEFSGV 879 (933)
Q Consensus 854 WTreEF~~Was~LA~r~GYsVEF~GV 879 (933)
-+.+.|. .|-++.|+.+...-.
T Consensus 180 Rs~~~~~----~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 180 RSDEHFR----ELFKQAGLRLVKEEK 201 (218)
T ss_dssp EEHHHHH----HHHHHCT-EEEEEEE
T ss_pred cCHHHHH----HHHHHcCCEEEEecc
Confidence 4666666 577889998854333
No 143
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.40 E-value=2.9e-06 Score=88.42 Aligned_cols=115 Identities=10% Similarity=0.032 Sum_probs=76.2
Q ss_pred HHHHHHhhc-CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 684 EYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 684 e~Ild~L~~-~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
+.+++.+.. ..+.+|||+|||+|.++..++.++. .+|+++|+++.+++.+++++.. .+..+++++
T Consensus 42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~------------~~~~~v~~~ 107 (199)
T PRK10909 42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLAT------------LKAGNARVV 107 (199)
T ss_pred HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHH------------hCCCcEEEE
Confidence 344454432 4567999999999999986444442 7999999999999999887752 233479999
Q ss_pred EcCccccC-CCCCCccEEEEccccccCChhHHHHHHHHHH--HccCCC-EEEEEecC
Q 002345 763 DGSITVFD-SRLHGFDIGTCLEVIEHMEEDEASQFGNIVL--SSFRPR-ILIVSTPN 815 (933)
Q Consensus 763 ~GDaedLp-~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~--rlLKPG-~LIITTPN 815 (933)
++|+.+.. .....||+|++.==... . ....+.+.+. .+|+|+ .+++..+.
T Consensus 108 ~~D~~~~l~~~~~~fDlV~~DPPy~~-g--~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 108 NTNALSFLAQPGTPHNVVFVDPPFRK-G--LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EchHHHHHhhcCCCceEEEECCCCCC-C--hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 99987632 22346999998644211 1 1112222233 347888 77777654
No 144
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.39 E-value=1.1e-06 Score=96.99 Aligned_cols=117 Identities=21% Similarity=0.290 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc----
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV---- 768 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaed---- 768 (933)
.++..++|+|||-|.-+.-.-+.| ...++|+||++..++.|+++........ ....-.+.|+.+|...
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~------~~~~f~a~f~~~Dc~~~~l~ 187 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRF------KKFIFTAVFIAADCFKERLM 187 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhh------hcccceeEEEEeccchhHHH
Confidence 367789999999988666555554 4789999999999999999876432211 0112367899998753
Q ss_pred --cCCCCCCccEEEEccccccCC--hhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 769 --FDSRLHGFDIGTCLEVIEHME--EDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 769 --Lp~~~~sFDlVVc~eVLEHLp--dD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
+++.+..||+|.|-.++|+-= ...+..++.++.+.|+|| ++|-|+|+++
T Consensus 188 d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 188 DLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred HhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 233445599999999998853 455667778899999999 6777888865
No 145
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=2.1e-06 Score=88.96 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=67.8
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+........+++|+|+|||+|.+....+-.|+ .+|+|||+++++++.++++..+ ...+++|+.+|
T Consensus 37 ~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~-------------l~g~v~f~~~d 101 (198)
T COG2263 37 VAYLRGDLEGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE-------------LLGDVEFVVAD 101 (198)
T ss_pred HHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh-------------hCCceEEEEcc
Confidence 33344556788999999999999998888885 8999999999999999988753 34579999999
Q ss_pred ccccCCCCCCccEEEEcc----ccccC
Q 002345 766 ITVFDSRLHGFDIGTCLE----VIEHM 788 (933)
Q Consensus 766 aedLp~~~~sFDlVVc~e----VLEHL 788 (933)
+.++. ..||.|+++= ...|-
T Consensus 102 v~~~~---~~~dtvimNPPFG~~~rha 125 (198)
T COG2263 102 VSDFR---GKFDTVIMNPPFGSQRRHA 125 (198)
T ss_pred hhhcC---CccceEEECCCCccccccC
Confidence 98874 4688888742 35663
No 146
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.38 E-value=2.6e-06 Score=90.83 Aligned_cols=83 Identities=14% Similarity=0.225 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 681 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 681 qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
.-.+.+++.+...++.+|||||||+|.++..|++.+ ..|+|+|+++.+++.+++++. ...+++
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~--------------~~~~v~ 78 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLS--------------LYERLE 78 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhC--------------cCCcEE
Confidence 344556677666678899999999999999999987 579999999999999976542 135799
Q ss_pred EEEcCccccCCCCCCcc---EEEEc
Q 002345 761 LFDGSITVFDSRLHGFD---IGTCL 782 (933)
Q Consensus 761 fi~GDaedLp~~~~sFD---lVVc~ 782 (933)
++++|+.+++.. .|| +|+++
T Consensus 79 v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 79 VIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred EEECchhcCChh--HcCCcceEEEc
Confidence 999999887764 466 55554
No 147
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.37 E-value=2.5e-06 Score=97.53 Aligned_cols=111 Identities=17% Similarity=0.242 Sum_probs=77.0
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
.++.+.+.+...++.+|||+|||+|.++..|++.. .+|+|+|+++.+++.|++++.. .+..++++
T Consensus 280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~------------~~~~nv~~ 344 (431)
T TIGR00479 280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAEL------------NGIANVEF 344 (431)
T ss_pred HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHH------------hCCCceEE
Confidence 33445555555566899999999999999999876 6899999999999999987652 24568999
Q ss_pred EEcCccccC----CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 762 FDGSITVFD----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 762 i~GDaedLp----~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
+++|+.+.. .....||+|++.--=.-+. ..+.+.+. .++|+ .++++
T Consensus 345 ~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~----~~~l~~l~-~l~~~~ivyvs 395 (431)
T TIGR00479 345 LAGTLETVLPKQPWAGQIPDVLLLDPPRKGCA----AEVLRTII-ELKPERIVYVS 395 (431)
T ss_pred EeCCHHHHHHHHHhcCCCCCEEEECcCCCCCC----HHHHHHHH-hcCCCEEEEEc
Confidence 999997631 2245799998632211111 23333233 47888 55554
No 148
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.35 E-value=3.7e-06 Score=94.96 Aligned_cols=109 Identities=15% Similarity=0.191 Sum_probs=75.5
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+.+.+....+.+|||+|||+|.++..++..+ .+|+|||+++.+++.|++++.. .+..+++++.+
T Consensus 224 ~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~------------~~~~~~~~~~~ 288 (374)
T TIGR02085 224 TARQWVREIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQM------------LGLDNLSFAAL 288 (374)
T ss_pred HHHHHHHhcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHH------------cCCCcEEEEEC
Confidence 34444443456799999999999999999776 6899999999999999987652 23448999999
Q ss_pred CccccCCC-CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 765 SITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 765 DaedLp~~-~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
|+.+.... ...||+|++.=--..+. ..+.+.+. .++|+ .++++.
T Consensus 289 d~~~~~~~~~~~~D~vi~DPPr~G~~----~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 289 DSAKFATAQMSAPELVLVNPPRRGIG----KELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CHHHHHHhcCCCCCEEEECCCCCCCc----HHHHHHHH-hcCCCeEEEEEe
Confidence 99764322 24699998863322222 12233233 47888 566554
No 149
>PRK01581 speE spermidine synthase; Validated
Probab=98.34 E-value=3e-06 Score=95.67 Aligned_cols=113 Identities=15% Similarity=0.089 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHH--HhhhhhcccccCCCCCCCccEEEEEcCcccc-
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI--IHSKLSKKLDAAVPCTDVKSAVLFDGSITVF- 769 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~Arkr--L~a~ls~~~~~~~Pr~~~~nVefi~GDaedL- 769 (933)
..+.+||+||||+|..++.+.++. +..+|++||+++++++.|++. +.. ... .....++++++.+|+.+.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~-~~~------~~~~DpRV~vvi~Da~~fL 220 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVS-LNK------SAFFDNRVNVHVCDAKEFL 220 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccch-hcc------ccCCCCceEEEECcHHHHH
Confidence 467899999999999999999875 357999999999999999852 110 000 011356899999999874
Q ss_pred CCCCCCccEEEEccc--cc-cCChhHHHHHHHHHHHccCCCEEEEEe
Q 002345 770 DSRLHGFDIGTCLEV--IE-HMEEDEASQFGNIVLSSFRPRILIVST 813 (933)
Q Consensus 770 p~~~~sFDlVVc~eV--LE-HLpdD~l~aL~eeI~rlLKPG~LIITT 813 (933)
......||+|++-.. .. +...-....|.+.+.+.|+||++++..
T Consensus 221 ~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 221 SSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 334568999998631 11 111011133456699999999665554
No 150
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.32 E-value=1.6e-06 Score=105.12 Aligned_cols=106 Identities=12% Similarity=0.046 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC--ccEEEEEcCccccC-
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV--KSAVLFDGSITVFD- 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~--~nVefi~GDaedLp- 770 (933)
++++|||+|||+|.++..+++.|. .+|++||+|+.+++.|++++.. .+. .+++++++|+.+..
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~------------ng~~~~~v~~i~~D~~~~l~ 603 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFAL------------NGLSGRQHRLIQADCLAWLK 603 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHH------------hCCCccceEEEEccHHHHHH
Confidence 578999999999999999998763 5799999999999999988752 122 37999999987632
Q ss_pred CCCCCccEEEEcc-----------ccccCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002345 771 SRLHGFDIGTCLE-----------VIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 815 (933)
Q Consensus 771 ~~~~sFDlVVc~e-----------VLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN 815 (933)
.....||+|++.= +..... +. ..+...+.++|+||++++...|
T Consensus 604 ~~~~~fDlIilDPP~f~~~~~~~~~~~~~~-~y-~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 604 EAREQFDLIFIDPPTFSNSKRMEDSFDVQR-DH-VALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred HcCCCcCEEEECCCCCCCCCccchhhhHHH-HH-HHHHHHHHHHcCCCCEEEEEeC
Confidence 1246899999941 111111 22 3344568899999944444444
No 151
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.30 E-value=2.4e-06 Score=93.93 Aligned_cols=90 Identities=14% Similarity=0.275 Sum_probs=69.8
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
++.+++.+...++.+|||||||.|.++..|++.+ .+|+|+|+|+.|++.+++++.. .....+++++
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~-----------~~~~~~v~ii 90 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQN-----------SPLASKLEVI 90 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHh-----------cCCCCcEEEE
Confidence 3456666666678899999999999999999876 6899999999999999987652 1124579999
Q ss_pred EcCccccCCCCCCccEEEEccccccCC
Q 002345 763 DGSITVFDSRLHGFDIGTCLEVIEHME 789 (933)
Q Consensus 763 ~GDaedLp~~~~sFDlVVc~eVLEHLp 789 (933)
++|+.+.+. ..||+|+++-- .++.
T Consensus 91 ~~Dal~~~~--~~~d~VvaNlP-Y~Is 114 (294)
T PTZ00338 91 EGDALKTEF--PYFDVCVANVP-YQIS 114 (294)
T ss_pred ECCHhhhcc--cccCEEEecCC-cccC
Confidence 999987654 46898887533 3444
No 152
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.30 E-value=5.3e-06 Score=91.07 Aligned_cols=118 Identities=14% Similarity=0.083 Sum_probs=78.9
Q ss_pred CCEEEEEcCCcChH----HHHHhcCCC---CCceEEEEeCChHHHHHHHHHHhhhh----------hccccc-CCC----
Q 002345 695 ATTLVDFGCGSGSL----LDSLLDYPT---ALEKIVGVDISQKSLSRAAKIIHSKL----------SKKLDA-AVP---- 752 (933)
Q Consensus 695 g~rVLDIGCGtG~f----L~~LAr~g~---~f~~VtGVDIS~emLe~ArkrL~a~l----------s~~~~~-~~P---- 752 (933)
.-+|+..||++|.= +..|.+..+ ...+|+|+|||+.+|+.|++-.-... ...-.. ..+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 46999999999962 233333211 12579999999999999986421000 000000 000
Q ss_pred ----CCCCccEEEEEcCccccCCC-CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 753 ----CTDVKSAVLFDGSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 753 ----r~~~~nVefi~GDaedLp~~-~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
..-...|.|.+.|+.+.+++ .+.||+|+|..|+.|++++....+.+.+.+.|+||++++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 01124689999999875543 5789999999999999877777777789999999944443
No 153
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.25 E-value=5.8e-06 Score=89.38 Aligned_cols=94 Identities=19% Similarity=0.379 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
...++||||.|.|..+..|+... .+|++.|+|+.|..+-+++ +.+++ +..++...+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~k-------------------g~~vl--~~~~w~~~~ 149 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKK-------------------GFTVL--DIDDWQQTD 149 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhC-------------------CCeEE--ehhhhhccC
Confidence 45789999999999999998875 7999999999997665442 22222 222333345
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
..||+|.|..||..-. ++...+.+ +.+.|+|+ .+++..
T Consensus 150 ~~fDvIscLNvLDRc~-~P~~LL~~-i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 150 FKFDVISCLNVLDRCD-RPLTLLRD-IRRALKPNGRLILAV 188 (265)
T ss_pred CceEEEeehhhhhccC-CHHHHHHH-HHHHhCCCCEEEEEE
Confidence 6899999999999998 77677765 99999998 555543
No 154
>PRK03612 spermidine synthase; Provisional
Probab=98.24 E-value=5.3e-06 Score=97.55 Aligned_cols=112 Identities=16% Similarity=0.216 Sum_probs=77.6
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHH--HhhhhhcccccCCCCCCCccEEEEEcCcccc-
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI--IHSKLSKKLDAAVPCTDVKSAVLFDGSITVF- 769 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~Arkr--L~a~ls~~~~~~~Pr~~~~nVefi~GDaedL- 769 (933)
.++++|||||||+|..+..+++++ ...+|++||+++++++.|+++ +..... .....++++++.+|+.+.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~-------~~~~dprv~vi~~Da~~~l 367 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNG-------GALDDPRVTVVNDDAFNWL 367 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhc-------cccCCCceEEEEChHHHHH
Confidence 356899999999999999998875 336999999999999999873 221000 011346899999998863
Q ss_pred CCCCCCccEEEEccccccCChhHH----HHHHHHHHHccCCC-EEEEEe
Q 002345 770 DSRLHGFDIGTCLEVIEHMEEDEA----SQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 770 p~~~~sFDlVVc~eVLEHLpdD~l----~aL~eeI~rlLKPG-~LIITT 813 (933)
....++||+|++...-.+.+ ... ..|.+.+.+.|+|| .+++..
T Consensus 368 ~~~~~~fDvIi~D~~~~~~~-~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 368 RKLAEKFDVIIVDLPDPSNP-ALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred HhCCCCCCEEEEeCCCCCCc-chhccchHHHHHHHHHhcCCCeEEEEec
Confidence 22346899999975433222 111 23445699999999 555443
No 155
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.21 E-value=3.2e-05 Score=86.22 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=88.4
Q ss_pred hhhcccCCchHHHHHHH---------HHHHhhcCCCCEEEEEcCCcChHHHHHhc----CCCCCceEEEEeCChHHHHHH
Q 002345 669 MEQALFSPPLSKQRVEY---------ALQHIKESCATTLVDFGCGSGSLLDSLLD----YPTALEKIVGVDISQKSLSRA 735 (933)
Q Consensus 669 ~e~~~F~PPLy~qRve~---------Ild~L~~~~g~rVLDIGCGtG~fL~~LAr----~g~~f~~VtGVDIS~emLe~A 735 (933)
.+.+...|.+|..|.+. |...+ ..+..|+|+|||+|.-+..|.+ .+ ....+++||||.++|+.+
T Consensus 44 Fe~It~lpEYYptr~E~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~-~~~~Y~plDIS~~~L~~a 120 (319)
T TIGR03439 44 FEEITYSPEYYLTNDEIEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQK-KSVDYYALDVSRSELQRT 120 (319)
T ss_pred HHHHHcCCccCChHHHHHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcC-CCceEEEEECCHHHHHHH
Confidence 34555556666555542 22222 2456899999999986554432 22 125799999999999999
Q ss_pred HHHHhhhhhcccccCCCCCCCccE--EEEEcCcccc----CC--CCCCccEEEEcc-ccccCChhHHHHHHHHHHH-ccC
Q 002345 736 AKIIHSKLSKKLDAAVPCTDVKSA--VLFDGSITVF----DS--RLHGFDIGTCLE-VIEHMEEDEASQFGNIVLS-SFR 805 (933)
Q Consensus 736 rkrL~a~ls~~~~~~~Pr~~~~nV--efi~GDaedL----p~--~~~sFDlVVc~e-VLEHLpdD~l~aL~eeI~r-lLK 805 (933)
.+++.. ...+.+ .-+.||..+. +. ......+++..+ +|.+++++++..|.+.+.+ .|+
T Consensus 121 ~~~L~~------------~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~ 188 (319)
T TIGR03439 121 LAELPL------------GNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALS 188 (319)
T ss_pred HHhhhh------------ccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCC
Confidence 887651 123344 4488888653 21 123467887776 8999999999899888999 999
Q ss_pred CC-EEEEEe
Q 002345 806 PR-ILIVST 813 (933)
Q Consensus 806 PG-~LIITT 813 (933)
|| .++|..
T Consensus 189 ~~d~lLiG~ 197 (319)
T TIGR03439 189 PSDSFLIGL 197 (319)
T ss_pred CCCEEEEec
Confidence 99 777754
No 156
>PLN02476 O-methyltransferase
Probab=98.21 E-value=4.1e-05 Score=83.85 Aligned_cols=157 Identities=12% Similarity=0.063 Sum_probs=101.3
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+++.-.+...++++|||||+|+|..+..+++.-++..+|+.+|.+++.++.|++++... +-..+|+++.
T Consensus 108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a-----------Gl~~~I~li~ 176 (278)
T PLN02476 108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA-----------GVSHKVNVKH 176 (278)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEEE
Confidence 34444445557899999999999999998874322357999999999999999988631 1234899999
Q ss_pred cCccccCC------CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCcCCCCCcch
Q 002345 764 GSITVFDS------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEK 837 (933)
Q Consensus 764 GDaedLp~------~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~efNs~f~~l~~~g~~eYpdEp 837 (933)
||+.+.-. ..+.||+|+.-.- . ..-..+.+.+.++|+||++++.. |.+|.... .+
T Consensus 177 GdA~e~L~~l~~~~~~~~FD~VFIDa~----K-~~Y~~y~e~~l~lL~~GGvIV~D-----NvL~~G~V-------~d-- 237 (278)
T PLN02476 177 GLAAESLKSMIQNGEGSSYDFAFVDAD----K-RMYQDYFELLLQLVRVGGVIVMD-----NVLWHGRV-------AD-- 237 (278)
T ss_pred cCHHHHHHHHHhcccCCCCCEEEECCC----H-HHHHHHHHHHHHhcCCCcEEEEe-----cCccCCcc-------cC--
Confidence 99876311 1358999987532 2 33344445688999999555542 33333211 00
Q ss_pred hhhccccccCCCcccccCHHHHHHHHHHHHHHcCcEEEEEeecC
Q 002345 838 TQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGG 881 (933)
Q Consensus 838 ~g~~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsVEF~GVG~ 881 (933)
+ ...+. ....++.+.+.+.....+...+..+|.
T Consensus 238 ------~-~~~d~----~t~~ir~fn~~v~~d~~~~~~llPigD 270 (278)
T PLN02476 238 ------P-LVNDA----KTISIRNFNKKLMDDKRVSISMVPIGD 270 (278)
T ss_pred ------c-ccCCH----HHHHHHHHHHHHhhCCCEEEEEEEeCC
Confidence 0 00010 122455555567776788787878875
No 157
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.21 E-value=2.6e-06 Score=91.01 Aligned_cols=172 Identities=15% Similarity=0.192 Sum_probs=108.0
Q ss_pred CEEEEEcCCcChHHHHHhcCCC-CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc----C
Q 002345 696 TTLVDFGCGSGSLLDSLLDYPT-ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF----D 770 (933)
Q Consensus 696 ~rVLDIGCGtG~fL~~LAr~g~-~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL----p 770 (933)
.+|||||||.|.....+.+..+ +.-.|.+.|.|+.+++..+++.. ....++.-...|+... +
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~-------------~~e~~~~afv~Dlt~~~~~~~ 139 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSG-------------YDESRVEAFVWDLTSPSLKEP 139 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccc-------------cchhhhcccceeccchhccCC
Confidence 3899999999999888877542 12579999999999999876532 1223455555555432 2
Q ss_pred CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhcccccc-CC
Q 002345 771 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFR-NH 848 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~~~fR-h~ 848 (933)
...+++|.|+++.||.-++++.....+++++++|||| .+++-.=. .|.-...+. ..+.|=......| +.
T Consensus 140 ~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg-~~DlaqlRF--------~~~~~i~~nfYVRgDG 210 (264)
T KOG2361|consen 140 PEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG-RYDLAQLRF--------KKGQCISENFYVRGDG 210 (264)
T ss_pred CCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecc-cchHHHHhc--------cCCceeecceEEccCC
Confidence 3468999999999999999888888888999999999 55553221 122111111 1111111111222 22
Q ss_pred CcccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCCCCCCccceeEEEecCCCCC
Q 002345 849 DHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRTPPE 903 (933)
Q Consensus 849 DHkFeWTreEF~~Was~LA~r~GYsVEF~GVG~~p~~~~Gf~TQIAVF~R~~~~~ 903 (933)
...++++.+++..|. ...|+..+ .+.....+.|++++..+.
T Consensus 211 T~~YfF~~eeL~~~f----~~agf~~~----------~~~~~~rl~vNr~k~lkm 251 (264)
T KOG2361|consen 211 TRAYFFTEEELDELF----TKAGFEEV----------QLEVDCRLLVNRKKQLKM 251 (264)
T ss_pred ceeeeccHHHHHHHH----Hhcccchh----------cccceeeeeeehhccCcc
Confidence 334678999999664 34454331 244455666776644443
No 158
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.18 E-value=2.2e-05 Score=82.29 Aligned_cols=119 Identities=13% Similarity=0.070 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002345 679 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 758 (933)
Q Consensus 679 y~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~n 758 (933)
....-+++...+...++++||||||+.|.-+..+++.-++..+|+.+|++++..+.|++.+... +...+
T Consensus 30 ~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a-----------g~~~~ 98 (205)
T PF01596_consen 30 SPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA-----------GLDDR 98 (205)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT-----------TGGGG
T ss_pred CHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc-----------CCCCc
Confidence 3333444544455567889999999999999999975433479999999999999999887631 12358
Q ss_pred EEEEEcCccccCC------CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe
Q 002345 759 AVLFDGSITVFDS------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 813 (933)
Q Consensus 759 Vefi~GDaedLp~------~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITT 813 (933)
|+++.||+.+.-. ..+.||+|+.-.- ..... .+.+.+.++|+||.++|..
T Consensus 99 I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~----K~~y~-~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 99 IEVIEGDALEVLPELANDGEEGQFDFVFIDAD----KRNYL-EYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEEES-HHHHHHHHHHTTTTTSEEEEEEEST----GGGHH-HHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEeccHhhHHHHHhccCCCceeEEEEccc----ccchh-hHHHHHhhhccCCeEEEEc
Confidence 9999999976311 1357999988543 22232 3334578999999666643
No 159
>PRK04148 hypothetical protein; Provisional
Probab=98.17 E-value=2.3e-05 Score=77.56 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=75.9
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcCh-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
.+++.+.+...++.+|||||||.|. ++..|++.| .+|+|+|+++..++.|++. .+++
T Consensus 5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~-------------------~~~~ 62 (134)
T PRK04148 5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKL-------------------GLNA 62 (134)
T ss_pred HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHh-------------------CCeE
Confidence 3566676666667899999999996 888999887 7999999999999888653 3688
Q ss_pred EEcCccccCCC-CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002345 762 FDGSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 817 (933)
Q Consensus 762 i~GDaedLp~~-~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~e 817 (933)
+.+|+.+.+.. -..+|+|.++-- +++-...+.+ +++-+.- -++|.+...+
T Consensus 63 v~dDlf~p~~~~y~~a~liysirp----p~el~~~~~~-la~~~~~-~~~i~~l~~e 113 (134)
T PRK04148 63 FVDDLFNPNLEIYKNAKLIYSIRP----PRDLQPFILE-LAKKINV-PLIIKPLSGE 113 (134)
T ss_pred EECcCCCCCHHHHhcCCEEEEeCC----CHHHHHHHHH-HHHHcCC-CEEEEcCCCC
Confidence 99999887654 467999998743 2222233333 5554433 4555555444
No 160
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.16 E-value=1.2e-05 Score=86.72 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=89.5
Q ss_pred CCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002345 675 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 754 (933)
Q Consensus 675 ~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~ 754 (933)
..-+|..-..+|+..+...++.+|||.|.|+|.++..|++.-++..+|+..|+.++..+.|++++... +
T Consensus 21 tQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~-----------g 89 (247)
T PF08704_consen 21 TQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH-----------G 89 (247)
T ss_dssp S----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT-----------T
T ss_pred cceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc-----------C
Confidence 34577788889999999999999999999999999999975545679999999999999999988631 2
Q ss_pred CCccEEEEEcCccccCCC---CCCccEEEEccccccCChhHHHHHHHHHHHcc-CCC-EEEEEecCCc
Q 002345 755 DVKSAVLFDGSITVFDSR---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSF-RPR-ILIVSTPNYE 817 (933)
Q Consensus 755 ~~~nVefi~GDaedLp~~---~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlL-KPG-~LIITTPN~e 817 (933)
...++++.++|+....+. ...+|+|+.- || ++-..+. .+.+.| +|| .+.+-.|+.+
T Consensus 90 l~~~v~~~~~Dv~~~g~~~~~~~~~DavfLD-----lp-~Pw~~i~-~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 90 LDDNVTVHHRDVCEEGFDEELESDFDAVFLD-----LP-DPWEAIP-HAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp CCTTEEEEES-GGCG--STT-TTSEEEEEEE-----SS-SGGGGHH-HHHHHE-EEEEEEEEEESSHH
T ss_pred CCCCceeEecceecccccccccCcccEEEEe-----CC-CHHHHHH-HHHHHHhcCCceEEEECCCHH
Confidence 234899999999753332 3679998873 55 4444554 488899 898 8888889854
No 161
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.14 E-value=1.8e-05 Score=80.83 Aligned_cols=136 Identities=18% Similarity=0.158 Sum_probs=88.1
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCc--------eEEEEeCChHHHHHHHHHHhhhhhcccc
Q 002345 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALE--------KIVGVDISQKSLSRAAKIIHSKLSKKLD 748 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~--------~VtGVDIS~emLe~ArkrL~a~ls~~~~ 748 (933)
++...-...++......++..|||-=||+|.++.+.+..+.... +++|+|+++++++.|++++...
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a------ 84 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA------ 84 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT------
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc------
Confidence 34444444555555566778999999999999976654432112 3889999999999999987631
Q ss_pred cCCCCCCCccEEEEEcCccccCCCCCCccEEEEcccccc-CCh-----hHHHHHHHHHHHccCCCEEEEEecCCchhHHH
Q 002345 749 AAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEH-MEE-----DEASQFGNIVLSSFRPRILIVSTPNYEYNAIL 822 (933)
Q Consensus 749 ~~~Pr~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEH-Lpd-----D~l~aL~eeI~rlLKPG~LIITTPN~efNs~f 822 (933)
.....+.+.++|+.+++...+.+|+|++.-=.-. +.. .--..|.+.+.+++++..+++++.+..+...+
T Consensus 85 -----g~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~~~~~ 159 (179)
T PF01170_consen 85 -----GVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNRELEKAL 159 (179)
T ss_dssp -----T-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCHHHHH
T ss_pred -----ccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHh
Confidence 1234689999999999977789999999653322 111 11134556688889988777777777765544
Q ss_pred H
Q 002345 823 Q 823 (933)
Q Consensus 823 ~ 823 (933)
.
T Consensus 160 ~ 160 (179)
T PF01170_consen 160 G 160 (179)
T ss_dssp T
T ss_pred c
Confidence 3
No 162
>PLN02672 methionine S-methyltransferase
Probab=98.13 E-value=2e-05 Score=99.19 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=60.5
Q ss_pred CCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhc-ccc---cCCCCCCCccEEEEEcCccccC
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK-KLD---AAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~-~~~---~~~Pr~~~~nVefi~GDaedLp 770 (933)
+.+|||+|||+|.++..|++.. +..+|+|+|+|+.+++.|++++....-. ... .........+++++++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 4689999999999999999875 2368999999999999999887531100 000 0000012247999999997643
Q ss_pred CC-CCCccEEEEc
Q 002345 771 SR-LHGFDIGTCL 782 (933)
Q Consensus 771 ~~-~~sFDlVVc~ 782 (933)
.. ...||+||++
T Consensus 198 ~~~~~~fDlIVSN 210 (1082)
T PLN02672 198 RDNNIELDRIVGC 210 (1082)
T ss_pred cccCCceEEEEEC
Confidence 22 2369999994
No 163
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.11 E-value=1.6e-05 Score=84.76 Aligned_cols=111 Identities=14% Similarity=0.231 Sum_probs=65.9
Q ss_pred HHHHHHhhc-CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 684 EYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 684 e~Ild~L~~-~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
..+++.+.. .++.+|||+|||+|.|+..|++.|. .+|+|||+++.|+....+. .++.. .....|++
T Consensus 64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~-~~~v~--------~~~~~ni~-- 130 (228)
T TIGR00478 64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQ-DERVK--------VLERTNIR-- 130 (228)
T ss_pred HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhc-CCCee--------EeecCCcc--
Confidence 334444432 3677999999999999999999863 7899999999888763211 00000 00111222
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 763 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 763 ~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
..+.++.......+|+++++..+. + ..+.++|+|| .+++--|.++
T Consensus 131 ~~~~~~~~~d~~~~DvsfiS~~~~---------l-~~i~~~l~~~~~~~L~KPqFE 176 (228)
T TIGR00478 131 YVTPADIFPDFATFDVSFISLISI---------L-PELDLLLNPNDLTLLFKPQFE 176 (228)
T ss_pred cCCHhHcCCCceeeeEEEeehHhH---------H-HHHHHHhCcCeEEEEcChHhh
Confidence 122222322334677777654431 2 2477788888 6656666644
No 164
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.10 E-value=9.7e-06 Score=84.09 Aligned_cols=113 Identities=17% Similarity=0.246 Sum_probs=79.6
Q ss_pred EEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-C--CCC
Q 002345 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-D--SRL 773 (933)
Q Consensus 697 rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL-p--~~~ 773 (933)
.+||||||.|.++..+|+.. +...++|||+....+..|.+++.. .+..|+.++++|+..+ . +++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~------------~~l~Nv~~~~~da~~~l~~~~~~ 86 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEK------------RGLKNVRFLRGDARELLRRLFPP 86 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHH------------HTTSSEEEEES-CTTHHHHHSTT
T ss_pred eEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHh------------hcccceEEEEccHHHHHhhcccC
Confidence 79999999999999999876 458999999999999999887653 2567999999999872 1 245
Q ss_pred CCccEEEEccccccCChh------HHHHHHHHHHHccCCC-EEEEEecCCchhHHH
Q 002345 774 HGFDIGTCLEVIEHMEED------EASQFGNIVLSSFRPR-ILIVSTPNYEYNAIL 822 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD------~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f 822 (933)
+++|.|....-=-|.... ....|.+.+.++|+|| .+.+.|-+.+|-...
T Consensus 87 ~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~ 142 (195)
T PF02390_consen 87 GSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWM 142 (195)
T ss_dssp TSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHH
T ss_pred CchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHH
Confidence 788888875432222100 0135666799999999 888888776665433
No 165
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.09 E-value=1.2e-05 Score=89.86 Aligned_cols=110 Identities=17% Similarity=0.119 Sum_probs=79.4
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEEEEEcCccccC
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDGSITVFD 770 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~-~nVefi~GDaedLp 770 (933)
..++++|||||||+|.+...-++.|. .+|+|||.|.- .+.|++.+.. ++. ..|++++|.+++..
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~i-a~~a~~iv~~------------N~~~~ii~vi~gkvEdi~ 122 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSI-ADFARKIVKD------------NGLEDVITVIKGKVEDIE 122 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHH-HHHHHHHHHh------------cCccceEEEeecceEEEe
Confidence 45789999999999999999999985 89999998864 4888877652 233 35899999999987
Q ss_pred CCCCCccEEEEccccccCC-hhHHHHHHHHHHHccCCCEEEEEecCC
Q 002345 771 SRLHGFDIGTCLEVIEHME-EDEASQFGNIVLSSFRPRILIVSTPNY 816 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLp-dD~l~aL~eeI~rlLKPG~LIITTPN~ 816 (933)
.+..+.|+|++-+.=..+- +.-+....-.=-+.|+||++++++-..
T Consensus 123 LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~ 169 (346)
T KOG1499|consen 123 LPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRAT 169 (346)
T ss_pred cCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccce
Confidence 7778999999954322221 122222222124789999887766543
No 166
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.09 E-value=2.5e-05 Score=79.34 Aligned_cols=113 Identities=12% Similarity=0.029 Sum_probs=70.9
Q ss_pred hcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 691 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 691 ~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
...++.+|||+|||+|..+..+++.. ...+|+..|.++ .++..+.++..... ....++.+...|..+..
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---------~~~~~v~v~~L~Wg~~~ 110 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS---------LLDGRVSVRPLDWGDEL 110 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT-----------------EEEE--TTS-H
T ss_pred hhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc---------cccccccCcEEEecCcc
Confidence 34578899999999999999998882 127999999998 89988887763210 12346777777664411
Q ss_pred ----CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 771 ----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 771 ----~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
.....||+|++.+++..- +....|.+.+.++|+|+ .+++..+.+
T Consensus 111 ~~~~~~~~~~D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 111 DSDLLEPHSFDVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp HHHHHS-SSBSEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred cccccccccCCEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 134589999999999863 45567777899999998 767766643
No 167
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.09 E-value=5.9e-05 Score=79.30 Aligned_cols=106 Identities=10% Similarity=0.069 Sum_probs=74.3
Q ss_pred EEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-----
Q 002345 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS----- 771 (933)
Q Consensus 697 rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~----- 771 (933)
+|||||||+|.....+++.. +.-+-.-.|+++..+..-+..+.... .+ .-.+.+ .-|+...+.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~-------~~-Nv~~P~---~lDv~~~~w~~~~~ 95 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAG-------LP-NVRPPL---ALDVSAPPWPWELP 95 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcC-------Cc-ccCCCe---EeecCCCCCccccc
Confidence 69999999999999999876 34567788988887655544443210 00 011112 223333211
Q ss_pred ---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 772 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 772 ---~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
....||+|+|+.++|-++-.....+.+.+.++|+|| .+++--|
T Consensus 96 ~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 96 APLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred cccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 245899999999999999777788888899999999 7777666
No 168
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.06 E-value=1.8e-05 Score=83.05 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002345 680 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759 (933)
Q Consensus 680 ~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV 759 (933)
...+..+++.+...+....+|||||.|......+-.. .+.+.+||++.+...+.|+............. ......+
T Consensus 28 ~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~---g~~~~~v 103 (205)
T PF08123_consen 28 PEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHY---GKRPGKV 103 (205)
T ss_dssp HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHC---TB---EE
T ss_pred HHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHh---hcccccc
Confidence 3444556677777788999999999999887666443 24679999999998888875443221110000 1234578
Q ss_pred EEEEcCccccCCC---CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002345 760 VLFDGSITVFDSR---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 815 (933)
Q Consensus 760 efi~GDaedLp~~---~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN 815 (933)
++.+||+.+.+.. ....|+|+++.+. ++++....+. .++..||||..||++..
T Consensus 104 ~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~-~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 104 ELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALA-ELLLELKPGARIISTKP 159 (205)
T ss_dssp EEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHH-HHHTTS-TT-EEEESS-
T ss_pred eeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHH-HHHhcCCCCCEEEECCC
Confidence 9999998775431 2467999998875 4545555554 47888999966677653
No 169
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.00 E-value=1.7e-05 Score=89.14 Aligned_cols=75 Identities=19% Similarity=0.327 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002345 679 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 758 (933)
Q Consensus 679 y~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~n 758 (933)
....++.+.+.+... +.+|||+|||+|.++..|++.. .+|+|||+++++++.|++++.. .+..+
T Consensus 183 ~~~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~------------~~~~~ 246 (353)
T TIGR02143 183 NIKMLEWACEVTQGS-KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAA------------NNIDN 246 (353)
T ss_pred HHHHHHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHH------------cCCCc
Confidence 344455566655422 3479999999999999999875 6899999999999999988652 24457
Q ss_pred EEEEEcCcccc
Q 002345 759 AVLFDGSITVF 769 (933)
Q Consensus 759 Vefi~GDaedL 769 (933)
++++.+|+.++
T Consensus 247 v~~~~~d~~~~ 257 (353)
T TIGR02143 247 VQIIRMSAEEF 257 (353)
T ss_pred EEEEEcCHHHH
Confidence 99999999763
No 170
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.98 E-value=5.5e-05 Score=80.35 Aligned_cols=117 Identities=13% Similarity=0.026 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002345 680 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759 (933)
Q Consensus 680 ~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV 759 (933)
.+.-.++.-.+...++++|||||.+.|.-+..|+..-+...+++.+|+++++.+.|++++.+. +-..+|
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a-----------g~~~~i 113 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA-----------GVDDRI 113 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc-----------CCcceE
Confidence 444455655666668899999999999999988876533578999999999999999988731 223458
Q ss_pred EEEE-cCccccCC--CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 760 VLFD-GSITVFDS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 760 efi~-GDaedLp~--~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
.++. ||+.+.-. ..++||+|+.-.- . ..-..+.+.+.++|+||.++|.
T Consensus 114 ~~~~~gdal~~l~~~~~~~fDliFIDad----K-~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 114 ELLLGGDALDVLSRLLDGSFDLVFIDAD----K-ADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEecCcHHHHHHhccCCCccEEEEeCC----h-hhCHHHHHHHHHHhCCCcEEEE
Confidence 8888 58766433 3689999987433 2 2223445568899999966664
No 171
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.97 E-value=0.00013 Score=63.34 Aligned_cols=102 Identities=23% Similarity=0.277 Sum_probs=66.8
Q ss_pred EEEEcCCcChHH--HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc--cCCCC
Q 002345 698 LVDFGCGSGSLL--DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV--FDSRL 773 (933)
Q Consensus 698 VLDIGCGtG~fL--~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaed--Lp~~~ 773 (933)
++|+|||.|... ..+...+ ..++|+|+++.++..++..... . ....+.+..+|... +++..
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~ 116 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRG---AYVVGVDLSPEMLALARARAEG-A-----------GLGLVDFVVADALGGVLPFED 116 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCC---ceEEEEeCCHHHHHHHHhhhhh-c-----------CCCceEEEEeccccCCCCCCC
Confidence 999999999954 3333222 4799999999999985543210 0 11116888888776 56655
Q ss_pred -CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 774 -HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 774 -~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
..||++.+...++|.. .... ...+.+.++|+ .+++...+..
T Consensus 117 ~~~~d~~~~~~~~~~~~--~~~~-~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 117 SASFDLVISLLVLHLLP--PAKA-LRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred CCceeEEeeeeehhcCC--HHHH-HHHHHHhcCCCcEEEEEeccCC
Confidence 4899994444444444 3334 44699999997 6777666543
No 172
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=1.3e-05 Score=80.31 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=74.3
Q ss_pred CCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002345 675 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 754 (933)
Q Consensus 675 ~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~ 754 (933)
.|.+..-.+..+-+......+++++|+|||.|-+....+-.+ ...|+|+||++++|+.+++++..
T Consensus 29 ~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~--~e~vlGfDIdpeALEIf~rNaeE------------- 93 (185)
T KOG3420|consen 29 RPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK--NESVLGFDIDPEALEIFTRNAEE------------- 93 (185)
T ss_pred cHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCC--CceEEeeecCHHHHHHHhhchHH-------------
Confidence 344445555556566677789999999999999986665554 37899999999999999887542
Q ss_pred CCccEEEEEcCccccCCCCCCccEEEEcccc
Q 002345 755 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVI 785 (933)
Q Consensus 755 ~~~nVefi~GDaedLp~~~~sFDlVVc~eVL 785 (933)
-..++++.++|+.++.+..+.||.++.+--+
T Consensus 94 fEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 94 FEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred hhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 1236799999999988888899999986543
No 173
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.96 E-value=2.3e-05 Score=88.26 Aligned_cols=74 Identities=23% Similarity=0.371 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002345 680 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759 (933)
Q Consensus 680 ~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV 759 (933)
+.-++++.+.+... +.+|||++||+|.++..|++.. .+|+|||+++.+++.|++++.. .+..++
T Consensus 193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~------------~~~~~v 256 (362)
T PRK05031 193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAA------------NGIDNV 256 (362)
T ss_pred HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHH------------hCCCcE
Confidence 34445555555422 3579999999999999999875 6899999999999999987652 244589
Q ss_pred EEEEcCcccc
Q 002345 760 VLFDGSITVF 769 (933)
Q Consensus 760 efi~GDaedL 769 (933)
+++.+|+.+.
T Consensus 257 ~~~~~d~~~~ 266 (362)
T PRK05031 257 QIIRMSAEEF 266 (362)
T ss_pred EEEECCHHHH
Confidence 9999998763
No 174
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.96 E-value=6.4e-05 Score=78.44 Aligned_cols=121 Identities=17% Similarity=0.134 Sum_probs=70.3
Q ss_pred CCCEEEEEcCCcChHH----HHHhc---C-CCCCceEEEEeCChHHHHHHHHHHhh----------hhhccc-ccCCCC-
Q 002345 694 CATTLVDFGCGSGSLL----DSLLD---Y-PTALEKIVGVDISQKSLSRAAKIIHS----------KLSKKL-DAAVPC- 753 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL----~~LAr---~-g~~f~~VtGVDIS~emLe~ArkrL~a----------~ls~~~-~~~~Pr- 753 (933)
+.-+|+-.||++|.=. ..|.+ . .+...+|+|.|+|+.+|+.|++-.=. .....- ......
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999732 22333 1 11135899999999999999752100 000000 000000
Q ss_pred ----CCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEec
Q 002345 754 ----TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 814 (933)
Q Consensus 754 ----~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTP 814 (933)
.-...|.|.+.|+.+.+...+.||+|+|..||-++.++....+.+.+.+.|+||++++.-+
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 0123689999999985556789999999999999998888888888999999995554443
No 175
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.94 E-value=1.1e-05 Score=85.93 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=83.7
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
....++|||||-|...+.|..++ ..+++-+|.|..|++.++.. +.....+..+.+|-+.+++.+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~--------------qdp~i~~~~~v~DEE~Ldf~e 135 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDA--------------QDPSIETSYFVGDEEFLDFKE 135 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhcc--------------CCCceEEEEEecchhcccccc
Confidence 35689999999999999998886 58999999999999999642 112235678889999999999
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEec
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 814 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTP 814 (933)
++||+|+++..+||+.+-+ .-+. .+...|||+.++|...
T Consensus 136 ns~DLiisSlslHW~NdLP-g~m~-~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 136 NSVDLIISSLSLHWTNDLP-GSMI-QCKLALKPDGLFIASM 174 (325)
T ss_pred cchhhhhhhhhhhhhccCc-hHHH-HHHHhcCCCccchhHH
Confidence 9999999999999987444 3444 4999999997777554
No 176
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.93 E-value=0.00016 Score=74.66 Aligned_cols=124 Identities=12% Similarity=-0.008 Sum_probs=77.6
Q ss_pred chHHHHHHHHHHHhh-cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002345 677 PLSKQRVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 755 (933)
Q Consensus 677 PLy~qRve~Ild~L~-~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~ 755 (933)
|......+.+...+. ...+.+|||++||+|.++..++.+|. ..|++||.++.+++.+++++... ..
T Consensus 31 pt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~-----------~~ 97 (189)
T TIGR00095 31 PTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALL-----------KS 97 (189)
T ss_pred CchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHh-----------CC
Confidence 333333344445443 23678999999999999999999884 68999999999999998887531 11
Q ss_pred CccEEEEEcCcccc-C-C-CCC-CccEEEEccccc-cCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 756 VKSAVLFDGSITVF-D-S-RLH-GFDIGTCLEVIE-HMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 756 ~~nVefi~GDaedL-p-~-~~~-sFDlVVc~eVLE-HLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
..+++++.+|+... . . ... .||+|+.-=-.. .........+.+ ..+|+++ .+++..+.
T Consensus 98 ~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~--~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 98 GEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCEN--NWILEDTVLIVVEEDR 161 (189)
T ss_pred cccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHH--CCCCCCCeEEEEEecC
Confidence 23689999999553 1 1 122 367776632221 122122222221 3578888 55655554
No 177
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.92 E-value=6.7e-05 Score=84.17 Aligned_cols=114 Identities=13% Similarity=0.155 Sum_probs=87.5
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc-
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG- 764 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G- 764 (933)
+++.....++..|||-=||||.++....-.| .+++|.|++..|++-|+.++.. -+.....++.+
T Consensus 189 mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~------------y~i~~~~~~~~~ 253 (347)
T COG1041 189 MVNLARVKRGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEY------------YGIEDYPVLKVL 253 (347)
T ss_pred HHHHhccccCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhh------------hCcCceeEEEec
Confidence 4455556688899999999999999998888 7999999999999999988763 23455666666
Q ss_pred CccccCCCCCCccEEEEcc------ccccCC-hhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 765 SITVFDSRLHGFDIGTCLE------VIEHME-EDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~e------VLEHLp-dD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
|+..++++...||.|++-- .+.-.. ++-...+.+.+.++|++| .+++.+|
T Consensus 254 Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 254 DATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9999998888899999921 111111 133345556799999998 8888888
No 178
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.91 E-value=5.6e-05 Score=82.28 Aligned_cols=113 Identities=17% Similarity=0.216 Sum_probs=74.4
Q ss_pred hcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 691 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 691 ~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
....+.+|||+|||.|..+..+.+..+...++++||.|+.|++.++..+.... ......+......+.
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~-----------~~~~~~~~~~~~~~~- 97 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP-----------NNRNAEWRRVLYRDF- 97 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc-----------ccccchhhhhhhccc-
Confidence 34577899999999999887766544345799999999999999987654211 111111111111111
Q ss_pred CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCC
Q 002345 771 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 816 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~ 816 (933)
......|+|++.++|..+++.....+.+.+.+.+.+ .++|..|..
T Consensus 98 ~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEpGt 142 (274)
T PF09243_consen 98 LPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP-VLVLVEPGT 142 (274)
T ss_pred ccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC-cEEEEcCCC
Confidence 112234999999999999976666666667666765 666666653
No 179
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.87 E-value=7.3e-05 Score=83.43 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE-cCccccC--
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD-GSITVFD-- 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~-GDaedLp-- 770 (933)
...++||||||+|.....|+... ...+++|+|+++.+++.|++++.... ....+|++.+ .|..++.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np----------~l~~~I~~~~~~~~~~i~~~ 182 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANP----------GLNGAIRLRLQKDSKAIFKG 182 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcc----------CCcCcEEEEEccchhhhhhc
Confidence 45799999999998877776543 12689999999999999998876310 1123577754 3333321
Q ss_pred --CCCCCccEEEEcccc
Q 002345 771 --SRLHGFDIGTCLEVI 785 (933)
Q Consensus 771 --~~~~sFDlVVc~eVL 785 (933)
.....||+|+|+==+
T Consensus 183 i~~~~~~fDlivcNPPf 199 (321)
T PRK11727 183 IIHKNERFDATLCNPPF 199 (321)
T ss_pred ccccCCceEEEEeCCCC
Confidence 235689999997544
No 180
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=5.5e-05 Score=82.09 Aligned_cols=89 Identities=12% Similarity=0.188 Sum_probs=71.6
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
.+.+++.+...++.+|||||+|.|.++..|++.+ .+|++|++++.++...++... ...+++++
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--------------~~~n~~vi 81 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--------------PYDNLTVI 81 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--------------cccceEEE
Confidence 4556677766678899999999999999999998 689999999999999877642 34689999
Q ss_pred EcCccccCCCCC-CccEEEEccccccCC
Q 002345 763 DGSITVFDSRLH-GFDIGTCLEVIEHME 789 (933)
Q Consensus 763 ~GDaedLp~~~~-sFDlVVc~eVLEHLp 789 (933)
++|+...+++.. .++.|+++ .=.++.
T Consensus 82 ~~DaLk~d~~~l~~~~~vVaN-lPY~Is 108 (259)
T COG0030 82 NGDALKFDFPSLAQPYKVVAN-LPYNIS 108 (259)
T ss_pred eCchhcCcchhhcCCCEEEEc-CCCccc
Confidence 999998887543 67788776 334555
No 181
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.85 E-value=6e-05 Score=87.48 Aligned_cols=106 Identities=12% Similarity=0.163 Sum_probs=67.8
Q ss_pred CCEEEEEcCCcChHHHHHhcCC---CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYP---TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g---~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
...|||||||+|-+....++.+ +...+|++|+-++.++...++++.. .+-..+|+++++|++++..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~-----------n~w~~~V~vi~~d~r~v~l 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA-----------NGWGDKVTVIHGDMREVEL 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH-----------TTTTTTEEEEES-TTTSCH
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh-----------cCCCCeEEEEeCcccCCCC
Confidence 5689999999999987666553 1136999999999888777665442 1233579999999999876
Q ss_pred CCCCccEEEEccccccCCh-hHHHHHHHHHHHccCCCEEEEEe
Q 002345 772 RLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPRILIVST 813 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpd-D~l~aL~eeI~rlLKPG~LIITT 813 (933)
+ ..+|+||+=.. -.+.. +-.........+.||||+++|+.
T Consensus 256 p-ekvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 256 P-EKVDIIVSELL-GSFGDNELSPECLDAADRFLKPDGIMIPS 296 (448)
T ss_dssp S-S-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEESS
T ss_pred C-CceeEEEEecc-CCccccccCHHHHHHHHhhcCCCCEEeCc
Confidence 4 48999998322 11211 11112233467899999766643
No 182
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.85 E-value=0.0001 Score=79.58 Aligned_cols=116 Identities=13% Similarity=0.064 Sum_probs=82.8
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 681 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 681 qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
..-+++...++..+.++|||||++.|.-+..+++.-++..+|+.+|++++..+.|++.+.. .+-..+|+
T Consensus 66 ~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~-----------ag~~~~I~ 134 (247)
T PLN02589 66 DEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQK-----------AGVAHKID 134 (247)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH-----------CCCCCceE
Confidence 3344555555666788999999999999888886432346999999999999999988763 12246899
Q ss_pred EEEcCccccCCC-------CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 761 LFDGSITVFDSR-------LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 761 fi~GDaedLp~~-------~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
++.|++.+.-.. .++||+|+.-.- . ..-..+.+.+.++|+||.+||.
T Consensus 135 ~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad----K-~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 135 FREGPALPVLDQMIEDGKYHGTFDFIFVDAD----K-DNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEeccHHHHHHHHHhccccCCcccEEEecCC----H-HHhHHHHHHHHHhcCCCeEEEE
Confidence 999998763211 258999987543 3 2223334557899999966554
No 183
>PLN02823 spermine synthase
Probab=97.82 E-value=0.00016 Score=81.15 Aligned_cols=108 Identities=21% Similarity=0.184 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DSR 772 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL-p~~ 772 (933)
.+++||.||+|.|..++.+.++. +..+|+.||+++++++.|++.+..... ....++++++.+|+... ...
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~--------~~~dprv~v~~~Da~~~L~~~ 173 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNRE--------AFCDKRLELIINDARAELEKR 173 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccc--------cccCCceEEEEChhHHHHhhC
Confidence 56799999999999999888865 347899999999999999887531100 11356899999998764 333
Q ss_pred CCCccEEEEccc-------cccCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 773 LHGFDIGTCLEV-------IEHMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 773 ~~sFDlVVc~eV-------LEHLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
.+.||+|++-.. ..|+- ....+.+.+.+.|+||++++.
T Consensus 174 ~~~yDvIi~D~~dp~~~~~~~~Ly--t~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 174 DEKFDVIIGDLADPVEGGPCYQLY--TKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred CCCccEEEecCCCccccCcchhhc--cHHHHHHHHHHhcCCCcEEEE
Confidence 568999998621 11221 112333258999999955543
No 184
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.0001 Score=85.27 Aligned_cols=117 Identities=18% Similarity=0.215 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 678 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 678 Ly~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
.....++++.+.+...++.+|||+=||.|.|+..|++.. .+|+|+|+++++++.|++++. .++..
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~------------~n~i~ 341 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAA------------ANGID 341 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHH------------HcCCC
Confidence 445567778888888788999999999999999999876 799999999999999998876 34667
Q ss_pred cEEEEEcCccccCCCC---CCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe
Q 002345 758 SAVLFDGSITVFDSRL---HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 813 (933)
Q Consensus 758 nVefi~GDaedLp~~~---~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITT 813 (933)
|++|..++++++.... ..||+|+.-=-=-=+. ..+.+.+.++-.+.+++|+.
T Consensus 342 N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~----~~~lk~l~~~~p~~IvYVSC 396 (432)
T COG2265 342 NVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGAD----REVLKQLAKLKPKRIVYVSC 396 (432)
T ss_pred cEEEEeCCHHHHhhhccccCCCCEEEECCCCCCCC----HHHHHHHHhcCCCcEEEEeC
Confidence 8999999999876543 5789998621100011 23444344443333777765
No 185
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.81 E-value=0.00026 Score=77.40 Aligned_cols=119 Identities=19% Similarity=0.206 Sum_probs=81.3
Q ss_pred CCCEEEEEcCCcCh----HHHHHhcCCC----CCceEEEEeCChHHHHHHHHHHhh-h----------hhcccccC-CC-
Q 002345 694 CATTLVDFGCGSGS----LLDSLLDYPT----ALEKIVGVDISQKSLSRAAKIIHS-K----------LSKKLDAA-VP- 752 (933)
Q Consensus 694 ~g~rVLDIGCGtG~----fL~~LAr~g~----~f~~VtGVDIS~emLe~ArkrL~a-~----------ls~~~~~~-~P- 752 (933)
..-+|.-+||++|. ++..|.+.++ ...+|+|.|||..+|+.|+.-.=. . ....-... .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36699999999996 3333444432 236899999999999999742111 0 00000000 00
Q ss_pred ----CCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 753 ----CTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 753 ----r~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
..-...|.|.+.|+.+.++..+.||+|+|..|+-++..+....+.+.++..|+|| .+++.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 0012358899999887665567899999999999999777777777899999999 55553
No 186
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.79 E-value=0.00017 Score=74.06 Aligned_cols=110 Identities=11% Similarity=0.120 Sum_probs=88.7
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+...+....+..|||+|.|+|-+++.+..++-....+++++.|++....-.+. .+.++++.|
T Consensus 39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----------------~p~~~ii~g 101 (194)
T COG3963 39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----------------YPGVNIING 101 (194)
T ss_pred HHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----------------CCCcccccc
Confidence 344556666788999999999999999999885567899999999988777553 346779999
Q ss_pred CccccC-----CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002345 765 SITVFD-----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 765 DaedLp-----~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LII 811 (933)
|+.++. .....||.|+|.--+-.++....-++.+.+...|.+|+.++
T Consensus 102 da~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lv 153 (194)
T COG3963 102 DAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLV 153 (194)
T ss_pred chhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEE
Confidence 998875 24567999999988888887777788888999999994444
No 187
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.77 E-value=0.00012 Score=78.03 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=85.6
Q ss_pred CCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC---C
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD---S 771 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp---~ 771 (933)
...+||||||.|.++..+|+.. |...++|||+....+..|.+++.+ .+..|+.++++|+..+- .
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~------------~~l~Nlri~~~DA~~~l~~~~ 115 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKE------------LGLKNLRLLCGDAVEVLDYLI 115 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHH------------cCCCcEEEEcCCHHHHHHhcC
Confidence 3589999999999999999987 457899999999999999887763 24449999999997642 2
Q ss_pred CCCCccEEEEccccccCCh------hHHHHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002345 772 RLHGFDIGTCLEVIEHMEE------DEASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 821 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpd------D~l~aL~eeI~rlLKPG-~LIITTPN~efNs~ 821 (933)
++++.|-|..+.-=-|-.. =....|.+.+.+.|+|| .+.+.|-+.+|-.+
T Consensus 116 ~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 116 PDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred CCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 4558888888654322210 00135566799999999 88888888766554
No 188
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.75 E-value=6.2e-05 Score=83.15 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=67.8
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
++.+++.+...++..+||.+||.|..+..+++..++..+|+|+|.++.|++.|++++. . ..++.++
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~------------~--~~ri~~i 73 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK------------P--FGRFTLV 73 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc------------c--CCcEEEE
Confidence 3456677766677899999999999999999876334789999999999999988753 1 3479999
Q ss_pred EcCccccCCC--C--CCccEEEEcc
Q 002345 763 DGSITVFDSR--L--HGFDIGTCLE 783 (933)
Q Consensus 763 ~GDaedLp~~--~--~sFDlVVc~e 783 (933)
++|+.++... . .++|.|++..
T Consensus 74 ~~~f~~l~~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 74 HGNFSNLKEVLAEGLGKVDGILLDL 98 (296)
T ss_pred eCCHHHHHHHHHcCCCccCEEEECC
Confidence 9999875421 1 2799998743
No 189
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00018 Score=75.99 Aligned_cols=135 Identities=13% Similarity=0.187 Sum_probs=94.2
Q ss_pred CchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcC-CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002345 676 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 754 (933)
Q Consensus 676 PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~-g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~ 754 (933)
|..|...++++.++|. ++.+.||+|.|+|.++..++.. +++...++|||.-++.++.+++++.+.... +++ .-..
T Consensus 66 p~mha~~le~L~~~L~--pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~-~e~-~~~~ 141 (237)
T KOG1661|consen 66 PHMHATALEYLDDHLQ--PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITT-SES-SSKL 141 (237)
T ss_pred hHHHHHHHHHHHHhhc--cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccC-chh-hhhh
Confidence 4566666666665554 7889999999999999877743 222245599999999999999988754310 000 0012
Q ss_pred CCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHH
Q 002345 755 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAIL 822 (933)
Q Consensus 755 ~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f 822 (933)
...++.+..||..........||.|.+-..-.-++ +.+...|+|| .++|+.-...+++++
T Consensus 142 ~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa~~~p--------q~l~dqL~~gGrllip~~~~~~~q~~ 202 (237)
T KOG1661|consen 142 KRGELSIVVGDGRKGYAEQAPYDAIHVGAAASELP--------QELLDQLKPGGRLLIPVGQDGGTQYL 202 (237)
T ss_pred ccCceEEEeCCccccCCccCCcceEEEccCccccH--------HHHHHhhccCCeEEEeecccCceeEE
Confidence 34578899999988777788999999875443333 3466678888 888877654555544
No 190
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.67 E-value=0.00028 Score=77.55 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=80.4
Q ss_pred CCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-C
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-L 773 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~-~ 773 (933)
+++||-||-|.|..++.+.++. +..+++.|||++..++.|++.+..... ....++++++.+|..++-.. .
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~--------~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSG--------GADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCccc--------ccCCCceEEEeccHHHHHHhCC
Confidence 4699999999999999999997 478999999999999999987652111 01257999999998775432 3
Q ss_pred CCccEEEEccccccCChhH---HHHHHHHHHHccCCCEEEEEe
Q 002345 774 HGFDIGTCLEVIEHMEEDE---ASQFGNIVLSSFRPRILIVST 813 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~---l~aL~eeI~rlLKPG~LIITT 813 (933)
.+||+|++-..=. ..+.+ ...|.+.+.+.|+|++++++-
T Consensus 148 ~~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 148 EKFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CcCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 3799999854422 22111 134556799999999666655
No 191
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.65 E-value=0.00022 Score=81.34 Aligned_cols=99 Identities=16% Similarity=0.144 Sum_probs=72.3
Q ss_pred CCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCC
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 774 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~ 774 (933)
..+|||++||+|.++..++...+ ..+|+++|+++.+++.+++++.. .+..+++++++|+..+.....
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~------------N~~~~~~v~~~Da~~~l~~~~ 124 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLEL------------NGLENEKVFNKDANALLHEER 124 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHH------------hCCCceEEEhhhHHHHHhhcC
Confidence 46899999999999999887542 35899999999999999988752 234467899999876432145
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 775 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 775 sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
.||+|++.= . . .+. .+.+.+.+.+++| .+.||
T Consensus 125 ~fD~V~lDP-~---G-s~~-~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 125 KFDVVDIDP-F---G-SPA-PFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCCEEEECC-C---C-CcH-HHHHHHHHHhcCCCEEEEE
Confidence 699999853 1 2 222 2334456678888 77777
No 192
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.65 E-value=0.00014 Score=82.54 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=82.7
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
++..++|+|||-|.....++.... ..++|+|+++..+.++........ ......+..+|+...++.+
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~-----------l~~k~~~~~~~~~~~~fed 176 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAY-----------LDNKCNFVVADFGKMPFED 176 (364)
T ss_pred ccccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHH-----------hhhhcceehhhhhcCCCCc
Confidence 556899999999999999988764 789999999988888765433211 1123445888999999999
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
..||.+.++++..|.+ +....+. +++++++||+++++
T Consensus 177 n~fd~v~~ld~~~~~~-~~~~~y~-Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 177 NTFDGVRFLEVVCHAP-DLEKVYA-EIYRVLKPGGLFIV 213 (364)
T ss_pred cccCcEEEEeecccCC-cHHHHHH-HHhcccCCCceEEe
Confidence 9999999999999999 6656666 59999999965553
No 193
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.64 E-value=0.00016 Score=81.44 Aligned_cols=76 Identities=21% Similarity=0.371 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 678 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 678 Ly~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
...+.++++++.+...+. +|||+=||.|.++..|++.. .+|+|||+++.+++.|++++. ..+..
T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~------------~N~i~ 244 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAK------------LNGID 244 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHH------------HTT--
T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHH------------HcCCC
Confidence 455667778888776555 89999999999999999987 799999999999999998876 34667
Q ss_pred cEEEEEcCcccc
Q 002345 758 SAVLFDGSITVF 769 (933)
Q Consensus 758 nVefi~GDaedL 769 (933)
+++|+.++++++
T Consensus 245 n~~f~~~~~~~~ 256 (352)
T PF05958_consen 245 NVEFIRGDAEDF 256 (352)
T ss_dssp SEEEEE--SHHC
T ss_pred cceEEEeeccch
Confidence 899999988664
No 194
>PRK00536 speE spermidine synthase; Provisional
Probab=97.57 E-value=0.00054 Score=74.65 Aligned_cols=99 Identities=12% Similarity=0.064 Sum_probs=73.0
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
..+++||=||.|+|..++.+.++. .+|+-|||++++++.+++.+..... ....++++++.. +.+ ..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~~--------~~~DpRv~l~~~-~~~--~~ 136 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHE--------VKNNKNFTHAKQ-LLD--LD 136 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHHH--------hhcCCCEEEeeh-hhh--cc
Confidence 467899999999999999999996 5999999999999999986653222 124567877752 211 12
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
.+.||+|++-.. . ++ .|.+.+.+.|+||+++++
T Consensus 137 ~~~fDVIIvDs~----~-~~--~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 137 IKKYDLIICLQE----P-DI--HKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred CCcCCEEEEcCC----C-Ch--HHHHHHHHhcCCCcEEEE
Confidence 368999997643 2 22 333569999999966665
No 195
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.57 E-value=0.0002 Score=75.07 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=75.3
Q ss_pred hhhcccCCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccc
Q 002345 669 MEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLD 748 (933)
Q Consensus 669 ~e~~~F~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~ 748 (933)
+..++|.|-+..+|.... +.+ .++.+|+|+-||-|.|+..+++.+ ....|+++|+++.+++..++++...
T Consensus 79 ~~kvyfs~rl~~Er~Ri~-~~v--~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lN------ 148 (200)
T PF02475_consen 79 LSKVYFSPRLSTERRRIA-NLV--KPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLN------ 148 (200)
T ss_dssp TTTS---GGGHHHHHHHH-TC----TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHT------
T ss_pred cceEEEccccHHHHHHHH-hcC--CcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHc------
Confidence 456778888888886543 333 368899999999999999999833 1278999999999999998887521
Q ss_pred cCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEE
Q 002345 749 AAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRIL 809 (933)
Q Consensus 749 ~~~Pr~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~L 809 (933)
.-...+..+++|+.++.. ...||-|++.. |..- ..|...+.+++++|++
T Consensus 149 -----kv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~-~~fl~~~~~~~~~~g~ 197 (200)
T PF02475_consen 149 -----KVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESS-LEFLDAALSLLKEGGI 197 (200)
T ss_dssp -----T-TTTEEEEES-GGG----TT-EEEEEE-------TSSG-GGGHHHHHHHEEEEEE
T ss_pred -----CCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHH-HHHHHHHHHHhcCCcE
Confidence 122468999999998765 77899888853 2111 1233446777887743
No 196
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.56 E-value=0.0013 Score=72.50 Aligned_cols=110 Identities=14% Similarity=0.158 Sum_probs=81.9
Q ss_pred CCCCEEEEEcCCcChHHHHHhc-CCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE-EEEEcCccccC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLD-YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA-VLFDGSITVFD 770 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr-~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV-efi~GDaedLp 770 (933)
..+-+||||.||.|.+...... ......+|.-.|.|+..++..++.+.. .+..++ +|.++|+.+..
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~------------~gL~~i~~f~~~dAfd~~ 201 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE------------RGLEDIARFEQGDAFDRD 201 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH------------cCCccceEEEecCCCCHh
Confidence 3567999999999998765554 332136899999999999999988763 344555 99999987743
Q ss_pred C---CCCCccEEEEccccccCChhH-HHHHHHHHHHccCCCEEEEEec
Q 002345 771 S---RLHGFDIGTCLEVIEHMEEDE-ASQFGNIVLSSFRPRILIVSTP 814 (933)
Q Consensus 771 ~---~~~sFDlVVc~eVLEHLpdD~-l~aL~eeI~rlLKPG~LIITTP 814 (933)
. -....|+++.+.++|.+++.. .......+.+.+.||..+|-|-
T Consensus 202 ~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 202 SLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred HhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 2 234689999999999999755 3433456999999995555553
No 197
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.55 E-value=0.00051 Score=70.10 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=71.0
Q ss_pred CEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC--
Q 002345 696 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL-- 773 (933)
Q Consensus 696 ~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~-- 773 (933)
.+|+|+.||.|..+..+|+.+ .+|++||+++..++.|+.+++-. +-..+|+++++|+.++....
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vY-----------Gv~~~I~~i~gD~~~~~~~~~~ 66 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVY-----------GVADNIDFICGDFFELLKRLKS 66 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHT-----------T-GGGEEEEES-HHHHGGGB--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEEeCCHHHHHhhccc
Confidence 369999999999999999986 79999999999999999887632 12458999999998764321
Q ss_pred CC-ccEEEEc-------------ccc-ccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHH
Q 002345 774 HG-FDIGTCL-------------EVI-EHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAIL 822 (933)
Q Consensus 774 ~s-FDlVVc~-------------eVL-EHLpdD~l~aL~eeI~rlLKPG~LIITTPN~efNs~f 822 (933)
.. ||+|++. .-| .++.+-....+.+ ..+.+.+..++.--.|.+.+++.
T Consensus 67 ~~~~D~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~-~~~~~t~nv~l~LPRn~dl~ql~ 129 (163)
T PF09445_consen 67 NKIFDVVFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLK-AARKITPNVVLFLPRNSDLNQLS 129 (163)
T ss_dssp ----SEEEE---BSSGGGGGSSSB-TTTSSSS--HHHHHH-HHHHH-S-EEEEEETTB-HHHHH
T ss_pred cccccEEEECCCCCCccccccCccCHHHccCCCCHHHHHH-HHHhhCCCEEEEeCCCCCHHHHH
Confidence 12 8999972 122 4555445555555 45556677555544565555543
No 198
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=97.52 E-value=0.00014 Score=61.48 Aligned_cols=36 Identities=33% Similarity=0.388 Sum_probs=34.0
Q ss_pred eEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002345 57 LYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (933)
Q Consensus 57 ~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~ 92 (933)
.|.|.+.+.+..+.+|.-..||+|+|.||+.||++|
T Consensus 32 ~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 32 RFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp EEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 999999999988888999999999999999999987
No 199
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.51 E-value=0.00046 Score=76.98 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=79.0
Q ss_pred HHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002345 688 QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 767 (933)
Q Consensus 688 d~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDae 767 (933)
+.-....++.|||+|||+|.+....++.|. .+|.+|+.| +|.+.|++.+.. ..-..+|.++.|-++
T Consensus 171 ~N~sDF~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS-~MAqyA~~Lv~~-----------N~~~~rItVI~GKiE 236 (517)
T KOG1500|consen 171 ENHSDFQDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEAS-EMAQYARKLVAS-----------NNLADRITVIPGKIE 236 (517)
T ss_pred hcccccCCcEEEEecCCccHHHHHHHHhCc--ceEEEEehh-HHHHHHHHHHhc-----------CCccceEEEccCccc
Confidence 333455788999999999999999988885 899999976 588999887652 123458999999999
Q ss_pred ccCCCCCCccEEEEcccccc-CChhHHHHHHHHHHHccCCCEEEEEe
Q 002345 768 VFDSRLHGFDIGTCLEVIEH-MEEDEASQFGNIVLSSFRPRILIVST 813 (933)
Q Consensus 768 dLp~~~~sFDlVVc~eVLEH-LpdD~l~aL~eeI~rlLKPG~LIITT 813 (933)
+...+ ++.|+|++--.=.- +.+.-++.+.. ..+.|+|.+-.++|
T Consensus 237 dieLP-Ek~DviISEPMG~mL~NERMLEsYl~-Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 237 DIELP-EKVDVIISEPMGYMLVNERMLESYLH-ARKWLKPNGKMFPT 281 (517)
T ss_pred cccCc-hhccEEEeccchhhhhhHHHHHHHHH-HHhhcCCCCcccCc
Confidence 87764 58999987322111 22233455554 67999998444444
No 200
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.46 E-value=0.0011 Score=65.00 Aligned_cols=105 Identities=24% Similarity=0.273 Sum_probs=70.8
Q ss_pred CCCCEEEEEcCCcChHHHHHhc-----CCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002345 693 SCATTLVDFGCGSGSLLDSLLD-----YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 767 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr-----~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDae 767 (933)
.+..+|+|+|||.|.++..|+. .. ..+|+|||.++..++.|.++...... ....++.+..+++.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~~~ 92 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSP--NLRVLGIDCNESLVESAQKRAQKLGS---------DLEKRLSFIQGDIA 92 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCC--CCeEEEEECCcHHHHHHHHHHHHhcc---------hhhccchhhccchh
Confidence 5678999999999999999988 43 37999999999999999877653210 11245677777665
Q ss_pred ccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 768 VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 768 dLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+... ....++++..+.=--+.+.-+.. .++|+ ..++..|+-
T Consensus 93 ~~~~-~~~~~~~vgLHaCG~Ls~~~l~~-------~~~~~~~~l~~vpCC 134 (141)
T PF13679_consen 93 DESS-SDPPDILVGLHACGDLSDRALRL-------FIRPNARFLVLVPCC 134 (141)
T ss_pred hhcc-cCCCeEEEEeecccchHHHHHHH-------HHHcCCCEEEEcCCc
Confidence 4322 45678888876655555222222 22377 667777763
No 201
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.45 E-value=0.00015 Score=79.42 Aligned_cols=98 Identities=22% Similarity=0.331 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
.+..++|+|||.|.++.. . +...++|.|++...+..|++. + ......+|+..++++.
T Consensus 45 ~gsv~~d~gCGngky~~~---~--p~~~~ig~D~c~~l~~~ak~~----------------~--~~~~~~ad~l~~p~~~ 101 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV---N--PLCLIIGCDLCTGLLGGAKRS----------------G--GDNVCRADALKLPFRE 101 (293)
T ss_pred CcceeeecccCCcccCcC---C--CcceeeecchhhhhccccccC----------------C--CceeehhhhhcCCCCC
Confidence 477899999999998642 1 235799999999999888542 1 1167789999999999
Q ss_pred CCccEEEEccccccCCh-hHHHHHHHHHHHccCCC-EEEEEec
Q 002345 774 HGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpd-D~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
.+||.++++.|+||+.. ......++++.+.|+|| ..+|.+.
T Consensus 102 ~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 102 ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 99999999999999973 33344556799999999 5555544
No 202
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.45 E-value=0.00054 Score=80.75 Aligned_cols=115 Identities=12% Similarity=0.142 Sum_probs=84.3
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--CC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--DS 771 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL--p~ 771 (933)
....+||||||.|.++..+|+.. +...++|||+....+..|.+++. ..+..|+.++.+|+..+ .+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~------------~~~l~N~~~~~~~~~~~~~~~ 413 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAG------------EQNITNFLLFPNNLDLILNDL 413 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHH------------HcCCCeEEEEcCCHHHHHHhc
Confidence 45689999999999999999886 45789999999998888876654 23567888998887533 24
Q ss_pred CCCCccEEEEccccccCChh------HHHHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002345 772 RLHGFDIGTCLEVIEHMEED------EASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 821 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD------~l~aL~eeI~rlLKPG-~LIITTPN~efNs~ 821 (933)
+.+++|.|+.+.-=-|.... ....|.+.+.++|+|| .+.+.|-+.+|..+
T Consensus 414 ~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~ 470 (506)
T PRK01544 414 PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYE 470 (506)
T ss_pred CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence 56789998886543332210 0135566799999999 88888877665443
No 203
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.45 E-value=0.00061 Score=74.53 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=71.8
Q ss_pred hcccCCchHHHHHHHHHHHhhcC---CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccc
Q 002345 671 QALFSPPLSKQRVEYALQHIKES---CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKL 747 (933)
Q Consensus 671 ~~~F~PPLy~qRve~Ild~L~~~---~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~ 747 (933)
.+....|-.+.-++++.+.+... ++..+||+|||+|..+..++..-+ ..+|++||.|+.++..|.+++....
T Consensus 122 gVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~---- 196 (328)
T KOG2904|consen 122 GVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLK---- 196 (328)
T ss_pred CeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHh----
Confidence 44455677788888888887643 455799999999999988876542 4799999999999999998876322
Q ss_pred ccCCCCCCCccEEEEEc----Cccc-cCCCCCCccEEEEcc
Q 002345 748 DAAVPCTDVKSAVLFDG----SITV-FDSRLHGFDIGTCLE 783 (933)
Q Consensus 748 ~~~~Pr~~~~nVefi~G----Daed-Lp~~~~sFDlVVc~e 783 (933)
...++..++- |..+ .+...+..|+++|+=
T Consensus 197 -------l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 197 -------LSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred -------hcCceEEEecccccccccccccccCceeEEecCC
Confidence 1234555533 3322 223457899999963
No 204
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.43 E-value=9.4e-05 Score=86.05 Aligned_cols=112 Identities=18% Similarity=0.206 Sum_probs=70.9
Q ss_pred HHHHHHHhhc----CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEE---eCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002345 683 VEYALQHIKE----SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGV---DISQKSLSRAAKIIHSKLSKKLDAAVPCTD 755 (933)
Q Consensus 683 ve~Ild~L~~----~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGV---DIS~emLe~ArkrL~a~ls~~~~~~~Pr~~ 755 (933)
++.|.+.+.. ..-.++||||||.|.|+..|.+++ -.++.+ |..+..++.|.++ +
T Consensus 102 id~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~---V~t~s~a~~d~~~~qvqfaleR----------------G 162 (506)
T PF03141_consen 102 IDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN---VTTMSFAPNDEHEAQVQFALER----------------G 162 (506)
T ss_pred HHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC---ceEEEcccccCCchhhhhhhhc----------------C
Confidence 3344444443 233689999999999999999886 222222 4444566666443 1
Q ss_pred CccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 756 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 756 ~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.+- .+-......+|++.+.||+|-|..++-.-.......|. ++-|+|||| .++.+.|-
T Consensus 163 vpa-~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~-evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 163 VPA-MIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLF-EVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred cch-hhhhhccccccCCccchhhhhcccccccchhcccceee-hhhhhhccCceEEecCCc
Confidence 111 11111235689999999999998876555434444555 499999999 66666654
No 205
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.40 E-value=0.0011 Score=71.40 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=75.2
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-C
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-S 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp-~ 771 (933)
..+++||=||-|.|..++.+.++. +..+|+.||+++.+++.|++.+...... ...++++++.+|+...- .
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--------~~d~r~~i~~~Dg~~~l~~ 145 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG--------LDDPRVRIIIGDGRKFLKE 145 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT--------GGSTTEEEEESTHHHHHHT
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc--------cCCCceEEEEhhhHHHHHh
Confidence 368899999999999999999886 4579999999999999998876532211 23568999999987642 2
Q ss_pred CCC-CccEEEEccccccCChhH--HHHHHHHHHHccCCCEEEE
Q 002345 772 RLH-GFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 772 ~~~-sFDlVVc~eVLEHLpdD~--l~aL~eeI~rlLKPG~LII 811 (933)
... .||+|+.-..-..-+... ...|.+.+.+.|+||++++
T Consensus 146 ~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v 188 (246)
T PF01564_consen 146 TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLV 188 (246)
T ss_dssp SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEE
Confidence 334 799999843322222111 1244456999999994444
No 206
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.39 E-value=0.0013 Score=70.94 Aligned_cols=113 Identities=12% Similarity=0.164 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002345 680 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759 (933)
Q Consensus 680 ~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV 759 (933)
..-.+.+++.+...++..|||||+|.|.++..|++.+ .++++||+++.+.+..++++. ..+++
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--------------~~~~~ 78 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--------------SNPNV 78 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--------------TCSSE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--------------hcccc
Confidence 3445567777777788999999999999999999987 799999999999988877532 34689
Q ss_pred EEEEcCccccCCCC---CCccEEEEccccccCChhHHHHHHHHHHHccCCC--EEEEEec
Q 002345 760 VLFDGSITVFDSRL---HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTP 814 (933)
Q Consensus 760 efi~GDaedLp~~~---~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG--~LIITTP 814 (933)
+++.+|+..++... .....|+++--. ++. . ..+. .+...-+.| .+++..+
T Consensus 79 ~vi~~D~l~~~~~~~~~~~~~~vv~NlPy-~is-~--~il~-~ll~~~~~g~~~~~l~vq 133 (262)
T PF00398_consen 79 EVINGDFLKWDLYDLLKNQPLLVVGNLPY-NIS-S--PILR-KLLELYRFGRVRMVLMVQ 133 (262)
T ss_dssp EEEES-TTTSCGGGHCSSSEEEEEEEETG-TGH-H--HHHH-HHHHHGGGCEEEEEEEEE
T ss_pred eeeecchhccccHHhhcCCceEEEEEecc-cch-H--HHHH-HHhhcccccccceEEEEe
Confidence 99999999887654 345566665332 443 1 2333 355555566 4444444
No 207
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.37 E-value=0.0018 Score=75.96 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=81.3
Q ss_pred hcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 691 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 691 ~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
...++.+|||+++|.|.-+..++...+.-..|+++|+++.-++..++++. +.+..++.+...|...+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~------------r~G~~nv~v~~~D~~~~~ 177 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANIS------------RCGVSNVALTHFDGRVFG 177 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH------------HcCCCeEEEEeCchhhhh
Confidence 45678999999999999988888754223589999999999999988876 346678899999987654
Q ss_pred C-CCCCccEEE----Ecc--ccccCCh-------h-------HHHHHHHHHHHccCCC-EEEEEecC
Q 002345 771 S-RLHGFDIGT----CLE--VIEHMEE-------D-------EASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 771 ~-~~~sFDlVV----c~e--VLEHLpd-------D-------~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
. ....||.|+ |+. ++.+-++ + ....+.+.+.++|||| .++-+|-.
T Consensus 178 ~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 178 AALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred hhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 2 245799999 543 3333221 1 1134455688999999 66666654
No 208
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.36 E-value=0.00074 Score=73.83 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=65.8
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+.|.+.....+.+.|||||.|+|.++..|.+.+ .+|+++++++.|+....++.+. . ......++++
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~g---------t--p~~~kLqV~~ 113 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQG---------T--PKSGKLQVLH 113 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcC---------C--CccceeeEEe
Confidence 334455556678999999999999999999998 7999999999999988877641 1 1234789999
Q ss_pred cCccccCCCCCCccEEEEc
Q 002345 764 GSITVFDSRLHGFDIGTCL 782 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~ 782 (933)
||+...+. ..||.+|++
T Consensus 114 gD~lK~d~--P~fd~cVsN 130 (315)
T KOG0820|consen 114 GDFLKTDL--PRFDGCVSN 130 (315)
T ss_pred cccccCCC--cccceeecc
Confidence 99987654 368998884
No 209
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.34 E-value=0.00051 Score=72.76 Aligned_cols=100 Identities=16% Similarity=0.253 Sum_probs=59.9
Q ss_pred HHHHHHHhhcCC-CCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 683 VEYALQHIKESC-ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 683 ve~Ild~L~~~~-g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
++.+++.+...+ ...|.|+|||++.++..+... ..|...|+-.. +-.+
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~----~~V~SfDLva~---------------------------n~~V 108 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK----HKVHSFDLVAP---------------------------NPRV 108 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-------EEEEESS-S---------------------------STTE
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC----ceEEEeeccCC---------------------------CCCE
Confidence 345666665444 468999999999999776432 57999997431 1135
Q ss_pred EEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
..+|+.+.|..+++.|++|+...|.-. +-. .|.+++.|+|||| .+.|....+
T Consensus 109 tacdia~vPL~~~svDv~VfcLSLMGT--n~~-~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 109 TACDIANVPLEDESVDVAVFCLSLMGT--NWP-DFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp EES-TTS-S--TT-EEEEEEES---SS---HH-HHHHHHHHHEEEEEEEEEEEEGG
T ss_pred EEecCccCcCCCCceeEEEEEhhhhCC--CcH-HHHHHHHheeccCcEEEEEEecc
Confidence 678999999999999999997776443 333 4445699999999 788876654
No 210
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.31 E-value=0.0094 Score=65.47 Aligned_cols=156 Identities=13% Similarity=0.130 Sum_probs=100.7
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhh---------------------hcccccCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKL---------------------SKKLDAAVP 752 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~l---------------------s~~~~~~~P 752 (933)
...+||--|||-|++...++..| ..+.|.|.|--|+-..+-.+.... +.......|
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 45799999999999999999998 799999999999866554333100 000000111
Q ss_pred -------CCCCccEEEEEcCccccCCCC---CCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHH
Q 002345 753 -------CTDVKSAVLFDGSITVFDSRL---HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAIL 822 (933)
Q Consensus 753 -------r~~~~nVefi~GDaedLp~~~---~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~efNs~f 822 (933)
.....++.+..||+.+.-... +.||+|+....|.-.. +. -.+.+.|.++||||++.|-.- ++.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~-Ni-~~Yi~tI~~lLkpgG~WIN~G-----PLl 205 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE-NI-IEYIETIEHLLKPGGYWINFG-----PLL 205 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH-HH-HHHHHHHHHHhccCCEEEecC-----Ccc
Confidence 112457889999998875554 7899999886654433 33 344567999999997666332 111
Q ss_pred HhhccCcCCCCCcchhhhccccccCCCcccccCHHHHHHHHHHHHHHcCcEEEEEee
Q 002345 823 QKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGV 879 (933)
Q Consensus 823 ~~l~~~g~~eYpdEp~g~~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsVEF~GV 879 (933)
|.-++ .. ...+-..+++.+|+. .++.+.||.++..-.
T Consensus 206 ----------yh~~~-----~~-~~~~~sveLs~eEi~----~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 206 ----------YHFEP-----MS-IPNEMSVELSLEEIK----ELIEKLGFEIEKEES 242 (270)
T ss_pred ----------ccCCC-----CC-CCCCcccCCCHHHHH----HHHHHCCCEEEEEEE
Confidence 10000 00 011223678999999 588889998865444
No 211
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.29 E-value=0.006 Score=70.11 Aligned_cols=109 Identities=13% Similarity=0.136 Sum_probs=78.2
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc----
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF---- 769 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL---- 769 (933)
++++|||+=|=||.|+...+..|. .+||+||+|...|+.|++++.- . ......+.|+++|+.++
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~L--N--------g~~~~~~~~i~~Dvf~~l~~~ 284 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAEL--N--------GLDGDRHRFIVGDVFKWLRKA 284 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHh--c--------CCCccceeeehhhHHHHHHHH
Confidence 489999999999999999998883 5999999999999999998651 1 11234689999998764
Q ss_pred CCCCCCccEEEEc--------cccccCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002345 770 DSRLHGFDIGTCL--------EVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 815 (933)
Q Consensus 770 p~~~~sFDlVVc~--------eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN 815 (933)
......||+|++- ....-+. .....+...+.++|+||.++++.-|
T Consensus 285 ~~~g~~fDlIilDPPsF~r~k~~~~~~~-rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 285 ERRGEKFDLIILDPPSFARSKKQEFSAQ-RDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred HhcCCcccEEEECCcccccCcccchhHH-HHHHHHHHHHHHHcCCCCEEEEEec
Confidence 2245689999981 0111111 2223445568999999955554444
No 212
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.29 E-value=0.0011 Score=72.61 Aligned_cols=114 Identities=11% Similarity=0.155 Sum_probs=69.1
Q ss_pred CCCEEEEEcCC--cChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 694 CATTLVDFGCG--SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 694 ~g~rVLDIGCG--tG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
.-...|||||| +-.....+++...+..+|+-||+++-.+..++..+.. .......++++|+.+...
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~------------~~~g~t~~v~aD~r~p~~ 135 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD------------NPRGRTAYVQADLRDPEA 135 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-------------TTSEEEEEE--TT-HHH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC------------CCCccEEEEeCCCCCHHH
Confidence 56789999999 3345666665444558999999999999999877641 111248999999987432
Q ss_pred -----------CCCCccEEEEccccccCCh-hHHHHHHHHHHHccCCC-EEEEEecCCchh
Q 002345 772 -----------RLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPNYEYN 819 (933)
Q Consensus 772 -----------~~~sFDlVVc~eVLEHLpd-D~l~aL~eeI~rlLKPG-~LIITTPN~efN 819 (933)
.....=.|++..+|||+++ ++...+...+...|.|| .++|+....+..
T Consensus 136 iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~ 196 (267)
T PF04672_consen 136 ILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA 196 (267)
T ss_dssp HHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS
T ss_pred HhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC
Confidence 1123347888999999986 33344555699999999 999988776644
No 213
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.27 E-value=0.0022 Score=78.50 Aligned_cols=135 Identities=16% Similarity=0.057 Sum_probs=83.5
Q ss_pred chHHHHHHHHHHHhhc-CCCCEEEEEcCCcChHHHHHhcCC------------C--------------------------
Q 002345 677 PLSKQRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYP------------T-------------------------- 717 (933)
Q Consensus 677 PLy~qRve~Ild~L~~-~~g~rVLDIGCGtG~fL~~LAr~g------------~-------------------------- 717 (933)
|+.+.-...++....- .++..++|.+||+|.++...+... +
T Consensus 172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 4444444444444332 356799999999999997665310 0
Q ss_pred ---CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC--CCCccEEEEcccc-ccCCh-
Q 002345 718 ---ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--LHGFDIGTCLEVI-EHMEE- 790 (933)
Q Consensus 718 ---~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~--~~sFDlVVc~eVL-EHLpd- 790 (933)
...+++|+|+++.+++.|++++... +....+++.++|+.+++.. .+.||+|+++-=. +-+..
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~-----------g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~ 320 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRA-----------GVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEE 320 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHc-----------CCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCch
Confidence 0126999999999999999987631 1223589999999887653 2479999997421 22321
Q ss_pred hHHHHHHHHHHHc---cCCC-EEEEEecCCchhHHH
Q 002345 791 DEASQFGNIVLSS---FRPR-ILIVSTPNYEYNAIL 822 (933)
Q Consensus 791 D~l~aL~eeI~rl---LKPG-~LIITTPN~efNs~f 822 (933)
.....+-+.+.+. ..|| .+.+-|++.++...+
T Consensus 321 ~~l~~lY~~lg~~lk~~~~g~~~~llt~~~~l~~~~ 356 (702)
T PRK11783 321 PALIALYSQLGRRLKQQFGGWNAALFSSSPELLSCL 356 (702)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHh
Confidence 2222221123333 3378 777788876654433
No 214
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.22 E-value=0.0017 Score=73.22 Aligned_cols=118 Identities=19% Similarity=0.172 Sum_probs=91.3
Q ss_pred hhhhhcccCCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcc
Q 002345 667 DRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK 746 (933)
Q Consensus 667 er~e~~~F~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~ 746 (933)
-....++|+|-+..+|...+. ... .+.+|||.=+|-|.|+..+++.+. ..|+++|+++.+++..++++.-
T Consensus 164 vD~~Kv~Fsprl~~ER~Rva~-~v~--~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~L----- 233 (341)
T COG2520 164 VDVAKVYFSPRLSTERARVAE-LVK--EGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRL----- 233 (341)
T ss_pred EchHHeEECCCchHHHHHHHh-hhc--CCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHh-----
Confidence 445668899999999987553 333 489999999999999999999984 3499999999999999998762
Q ss_pred cccCCCCCCCc-cEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC
Q 002345 747 LDAAVPCTDVK-SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 807 (933)
Q Consensus 747 ~~~~~Pr~~~~-nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG 807 (933)
++.. .+..++||..+.......||-|++...- .. ..|...+.+.+++|
T Consensus 234 -------N~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~-----~a-~~fl~~A~~~~k~~ 282 (341)
T COG2520 234 -------NKVEGRVEPILGDAREVAPELGVADRIIMGLPK-----SA-HEFLPLALELLKDG 282 (341)
T ss_pred -------cCccceeeEEeccHHHhhhccccCCEEEeCCCC-----cc-hhhHHHHHHHhhcC
Confidence 2333 4899999999988777889999997542 11 12233467778888
No 215
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.20 E-value=0.0019 Score=72.62 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=78.4
Q ss_pred CCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCC
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 774 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~ 774 (933)
....+|+|.|.|..+..+.... .+|-|++++...+..++..+ . +.|+.+-||...- .+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f---p~ik~infdlp~v~~~a~~~---------------~-~gV~~v~gdmfq~-~P-- 235 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY---PHIKGINFDLPFVLAAAPYL---------------A-PGVEHVAGDMFQD-TP-- 235 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC---CCCceeecCHHHHHhhhhhh---------------c-CCcceeccccccc-CC--
Confidence 3789999999999999988865 57999999998887776543 1 3588888887654 22
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 775 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 775 sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
.-|+|++-++|||+++++...|.+++...|+|| .+++..
T Consensus 236 ~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 236 KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 456999999999999999999999999999999 555543
No 216
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.19 E-value=0.00064 Score=70.97 Aligned_cols=112 Identities=21% Similarity=0.268 Sum_probs=79.6
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
|+......+......++.|+|.|+|.++...++.. .+|++|+.++...+.|.++++ -.+..++++
T Consensus 20 RlavF~~ai~~va~d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~------------v~g~~n~ev 84 (252)
T COG4076 20 RLAVFTSAIAEVAEDTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLH------------VPGDVNWEV 84 (252)
T ss_pred HHHHHHHHHHHHhhhceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCC------------CCCCcceEE
Confidence 44444444444445789999999999998877764 799999999999999988764 346779999
Q ss_pred EEcCccccCCCCCCccEEEEccccccC-ChhHHHHHHHHHHHccCCCEEEE
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEVIEHM-EEDEASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eVLEHL-pdD~l~aL~eeI~rlLKPG~LII 811 (933)
+.||+.+.++ ...|+|+|-+.=.-+ .+.+...+. .+...||-..-+|
T Consensus 85 v~gDA~~y~f--e~ADvvicEmlDTaLi~E~qVpV~n-~vleFLr~d~tii 132 (252)
T COG4076 85 VVGDARDYDF--ENADVVICEMLDTALIEEKQVPVIN-AVLEFLRYDPTII 132 (252)
T ss_pred Eecccccccc--cccceeHHHHhhHHhhcccccHHHH-HHHHHhhcCCccc
Confidence 9999999887 578999995532222 223333333 3666777663333
No 217
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.17 E-value=0.0013 Score=71.56 Aligned_cols=99 Identities=15% Similarity=0.279 Sum_probs=71.7
Q ss_pred HHHHHHhhcC-CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 684 EYALQHIKES-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 684 e~Ild~L~~~-~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
+.+++.++.. ....|.|+|||++.++. .. ...|..+|+-+ .+-+++
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~---~~---~~kV~SfDL~a---------------------------~~~~V~ 215 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS---SE---RHKVHSFDLVA---------------------------VNERVI 215 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh---cc---ccceeeeeeec---------------------------CCCcee
Confidence 4456666544 45678999999999875 22 26799999632 133567
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002345 763 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 818 (933)
Q Consensus 763 ~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ef 818 (933)
.+|+.+.|.++.+.|++|+...| |..+-. .|.+++.|+|+|| .+.|....+.|
T Consensus 216 ~cDm~~vPl~d~svDvaV~CLSL--Mgtn~~-df~kEa~RiLk~gG~l~IAEv~SRf 269 (325)
T KOG3045|consen 216 ACDMRNVPLEDESVDVAVFCLSL--MGTNLA-DFIKEANRILKPGGLLYIAEVKSRF 269 (325)
T ss_pred eccccCCcCccCcccEEEeeHhh--hcccHH-HHHHHHHHHhccCceEEEEehhhhc
Confidence 78999999999999999986665 443444 4455699999999 88887766544
No 218
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=97.10 E-value=0.0016 Score=54.74 Aligned_cols=57 Identities=26% Similarity=0.332 Sum_probs=44.2
Q ss_pred HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002345 24 QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (933)
Q Consensus 24 q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~ 92 (933)
|+.|-.-.|.+.++.. |...| .|.|.+.+.+..+.+|.-+.||+|||.||+.||+.|
T Consensus 10 ~~~~~~~~y~~~~~~g-----------~~~~~-~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 10 QKRGLPPEYELVKEEG-----------PDHAP-RFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred HHCCCCCEEEEEeeeC-----------CCCCC-cEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence 5566567887765432 12223 899999998877778999999999999999999987
No 219
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.10 E-value=0.0019 Score=70.56 Aligned_cols=122 Identities=19% Similarity=0.269 Sum_probs=74.2
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCC------CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYP------TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g------~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
+++.+.+....+.+|+|-.||+|.|+..+.++- ....+++|+|+++.++..|+-++.- .. ....
T Consensus 36 ~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l--~~--------~~~~ 105 (311)
T PF02384_consen 36 DLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL--HG--------IDNS 105 (311)
T ss_dssp HHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH--TT--------HHCB
T ss_pred HHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh--hc--------cccc
Confidence 456666666677899999999999998776520 0127899999999999998755421 10 1122
Q ss_pred cEEEEEcCccccCCC--CCCccEEEEccccc---c----CC------------hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 758 SAVLFDGSITVFDSR--LHGFDIGTCLEVIE---H----ME------------EDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 758 nVefi~GDaedLp~~--~~sFDlVVc~eVLE---H----Lp------------dD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
...+..+|....+.. ...||+|+++--+- + .. ....-+|...+.+.|++| .+.+.+|+
T Consensus 106 ~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 106 NINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp GCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 346888887654433 47899999943111 1 00 011124566689999998 77777775
No 220
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.10 E-value=0.0048 Score=69.74 Aligned_cols=87 Identities=16% Similarity=0.098 Sum_probs=63.2
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.++|||||++|.++..|.++| .+|+|||..+ | +. .+. ..++|..+.+|.......
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~-l---~~-~L~--------------~~~~V~h~~~d~fr~~p~ 267 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGP-M---AQ-SLM--------------DTGQVEHLRADGFKFRPP 267 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechh-c---CH-hhh--------------CCCCEEEEeccCcccCCC
Confidence 467899999999999999999998 6999999654 1 11 111 345799999988765544
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 807 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG 807 (933)
...+|+++|-++- .+.... +.+...|..|
T Consensus 268 ~~~vDwvVcDmve-----~P~rva-~lm~~Wl~~g 296 (357)
T PRK11760 268 RKNVDWLVCDMVE-----KPARVA-ELMAQWLVNG 296 (357)
T ss_pred CCCCCEEEEeccc-----CHHHHH-HHHHHHHhcC
Confidence 6789999998762 232222 3466777777
No 221
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.94 E-value=0.0032 Score=69.60 Aligned_cols=126 Identities=13% Similarity=0.127 Sum_probs=79.5
Q ss_pred cCCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002345 674 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 753 (933)
Q Consensus 674 F~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr 753 (933)
|.......| .++.+. .++++|||+=|=+|.|+...+..|. .+|+.||.|..+|+.|++++.-+ .
T Consensus 107 lFlDqR~nR-~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lN----------g 170 (286)
T PF10672_consen 107 LFLDQRENR-KWVRKY---AKGKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALN----------G 170 (286)
T ss_dssp S-GGGHHHH-HHHHHH---CTTCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHT----------T
T ss_pred EcHHHHhhH-HHHHHH---cCCCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHc----------C
Confidence 333444444 344443 3578999999999999998888763 68999999999999999986521 1
Q ss_pred CCCccEEEEEcCccccCC---CCCCccEEEEc---cc--cccCChhHHHHHHHHHHHccCCCEEEEEecCC
Q 002345 754 TDVKSAVLFDGSITVFDS---RLHGFDIGTCL---EV--IEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 816 (933)
Q Consensus 754 ~~~~nVefi~GDaedLp~---~~~sFDlVVc~---eV--LEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~ 816 (933)
....+++++++|+.+.-. ..+.||+||+- .. -..+..+- ..+...+.++|+||+++++.-|+
T Consensus 171 ~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y-~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 171 LDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDY-KKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp -CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHH-HHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHhcCCCCEEEEEcCC
Confidence 123579999999875321 34689999981 10 01112222 33445689999999666666654
No 222
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.75 E-value=0.0046 Score=65.12 Aligned_cols=108 Identities=15% Similarity=0.129 Sum_probs=79.3
Q ss_pred hcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 691 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 691 ~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
..-++++|||+|.|+|.....-++.|. ..|+..|+.+..++..+-+.. .+.-++.+...|+..
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~-------------angv~i~~~~~d~~g-- 138 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAA-------------ANGVSILFTHADLIG-- 138 (218)
T ss_pred cccccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchh-------------hccceeEEeeccccC--
Confidence 334689999999999999998888885 789999999877766644432 123478888888765
Q ss_pred CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002345 771 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 818 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ef 818 (933)
.+..||+++...++..= .....+.....++...| .++|.+|.+.|
T Consensus 139 -~~~~~Dl~LagDlfy~~--~~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 139 -SPPAFDLLLAGDLFYNH--TEADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred -CCcceeEEEeeceecCc--hHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 45689999999976433 33445555445555567 88899998765
No 223
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.74 E-value=0.0087 Score=70.65 Aligned_cols=77 Identities=26% Similarity=0.309 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCC-------CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPT-------ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 766 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~-------~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDa 766 (933)
...+|||.|||+|.|+..++++.. -...++|+|+++.++..|+.++... ....+.+..+|.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~------------~~~~~~i~~~d~ 98 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF------------ALLEINVINFNS 98 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc------------CCCCceeeeccc
Confidence 346899999999999987765321 0147899999999999998876521 111234444443
Q ss_pred ccc-----CCCCCCccEEEEc
Q 002345 767 TVF-----DSRLHGFDIGTCL 782 (933)
Q Consensus 767 edL-----p~~~~sFDlVVc~ 782 (933)
... ....+.||+|+++
T Consensus 99 l~~~~~~~~~~~~~fD~IIgN 119 (524)
T TIGR02987 99 LSYVLLNIESYLDLFDIVITN 119 (524)
T ss_pred ccccccccccccCcccEEEeC
Confidence 221 1123579999994
No 224
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.73 E-value=0.0024 Score=64.42 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=57.6
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 771 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~-- 771 (933)
.+.+|||+||+.|.++..+.+++.+..+|+|||+.+. . ....+.++++|+.+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~--------------~~~~~~~i~~d~~~~~~~~ 79 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------D--------------PLQNVSFIQGDITNPENIK 79 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------G--------------S-TTEEBTTGGGEEEEHSH
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------c--------------cccceeeeecccchhhHHH
Confidence 4589999999999999999998733479999999876 0 11245555666543210
Q ss_pred --------CCCCccEEEEccccccCCh----------hHHHHHHHHHHHccCCC-EEEEEec
Q 002345 772 --------RLHGFDIGTCLEVIEHMEE----------DEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 772 --------~~~sFDlVVc~eVLEHLpd----------D~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
....||+|+|-....--.. -....+. .+...|+|| .+++-+-
T Consensus 80 ~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~-~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 80 DIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLL-LALELLKPGGTFVIKVF 140 (181)
T ss_dssp HGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHH-HHHHHHCTTEEEEEEES
T ss_pred hhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHH-HHHhhhcCCCEEEEEec
Confidence 1268999999773221110 1112222 356789999 4555443
No 225
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.73 E-value=0.012 Score=67.27 Aligned_cols=100 Identities=13% Similarity=0.106 Sum_probs=73.4
Q ss_pred CEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-CC
Q 002345 696 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-LH 774 (933)
Q Consensus 696 ~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~-~~ 774 (933)
-+|||+.||+|..+..++.+.....+|+++|+++.+++.+++++.. .+..++.++++|+..+-.. ..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~------------N~~~~~~v~~~Da~~~l~~~~~ 113 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY------------NSVENIEVPNEDAANVLRYRNR 113 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH------------hCCCcEEEEchhHHHHHHHhCC
Confidence 5899999999999999988732247899999999999999988752 2334689999998765332 35
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 775 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 775 sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
.||+|..-- . ..+ . .|.+.+.+.+++| .+.||.
T Consensus 114 ~fDvIdlDP-f-Gs~---~-~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 114 KFHVIDIDP-F-GTP---A-PFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCCEEEeCC-C-CCc---H-HHHHHHHHhcccCCEEEEEe
Confidence 799998854 2 333 1 2344577788887 777763
No 226
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.70 E-value=0.015 Score=66.45 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=85.4
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCC----Cc--------------------------------
Q 002345 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA----LE-------------------------------- 720 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~----f~-------------------------------- 720 (933)
|+.+.....++....-.++..++|-=||+|.++...+-.+.. +.
T Consensus 174 pLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381)
T COG0116 174 PLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381)
T ss_pred CchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence 555555555555555556678999999999999877755421 01
Q ss_pred --eEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCccEEEEcccc-ccCChh-----H
Q 002345 721 --KIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVI-EHMEED-----E 792 (933)
Q Consensus 721 --~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~sFDlVVc~eVL-EHLpdD-----~ 792 (933)
.++|+|+++.+++.|+.++.+ .+-...|+|.++|+..+..+...+|+|||+==- +-+... -
T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA~~-----------AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~L 322 (381)
T COG0116 254 LPIIYGSDIDPRHIEGAKANARA-----------AGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKL 322 (381)
T ss_pred cceEEEecCCHHHHHHHHHHHHh-----------cCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHH
Confidence 377999999999999988653 233457999999999987766789999996321 122211 1
Q ss_pred HHHHHHHHHHccCCC-EEEEEec
Q 002345 793 ASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 793 l~aL~eeI~rlLKPG-~LIITTP 814 (933)
-..|.+.+.+.++-. ..++++.
T Consensus 323 Y~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 323 YREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHHhcCCceEEEEcc
Confidence 134555555666655 5555554
No 227
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.67 E-value=0.005 Score=65.57 Aligned_cols=89 Identities=12% Similarity=0.146 Sum_probs=61.7
Q ss_pred CEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC---C
Q 002345 696 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS---R 772 (933)
Q Consensus 696 ~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~---~ 772 (933)
-++|||||=+......- .+ ...|+.||+.+. .-.+.+.|+.+.|. .
T Consensus 53 lrlLEVGals~~N~~s~--~~--~fdvt~IDLns~---------------------------~~~I~qqDFm~rplp~~~ 101 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SG--WFDVTRIDLNSQ---------------------------HPGILQQDFMERPLPKNE 101 (219)
T ss_pred ceEEeecccCCCCcccc--cC--ceeeEEeecCCC---------------------------CCCceeeccccCCCCCCc
Confidence 58999999866544322 22 246999998761 11234556666544 3
Q ss_pred CCCccEEEEccccccCCh-hHHHHHHHHHHHccCCC-E-----EEEEecC
Q 002345 773 LHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-I-----LIVSTPN 815 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpd-D~l~aL~eeI~rlLKPG-~-----LIITTPN 815 (933)
.+.||+|+|+.||+++|+ .......+.+.++|+|+ . ++|.+|.
T Consensus 102 ~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 102 SEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred ccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 568999999999999993 33334445589999998 7 8888875
No 228
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.66 E-value=0.0043 Score=59.63 Aligned_cols=59 Identities=8% Similarity=0.170 Sum_probs=46.0
Q ss_pred EEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc
Q 002345 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 768 (933)
Q Consensus 697 rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaed 768 (933)
++||||||.|.++..+++.++ ..+|+++|+++.+.+.+++++.. .+..++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~------------n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKL------------NNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHH------------cCCCcEEEEEeeeeC
Confidence 489999999999999988763 34899999999999999887652 223457777766654
No 229
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.62 E-value=0.0052 Score=63.82 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=67.8
Q ss_pred EEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCc
Q 002345 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGF 776 (933)
Q Consensus 697 rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~sF 776 (933)
+++|||.|.|..+..|+=.. |..+++-+|....-+..-+..... .+..|++++++.+++ ......|
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~------------L~L~nv~v~~~R~E~-~~~~~~f 116 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRE------------LGLSNVEVINGRAEE-PEYRESF 116 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHH------------HT-SSEEEEES-HHH-TTTTT-E
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHH------------hCCCCEEEEEeeecc-cccCCCc
Confidence 89999999999887776443 346899999999877666544332 255689999999998 4456789
Q ss_pred cEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002345 777 DIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 777 DlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LII 811 (933)
|+|++..|- +...+.+-+..++++|+.++
T Consensus 117 d~v~aRAv~------~l~~l~~~~~~~l~~~G~~l 145 (184)
T PF02527_consen 117 DVVTARAVA------PLDKLLELARPLLKPGGRLL 145 (184)
T ss_dssp EEEEEESSS------SHHHHHHHHGGGEEEEEEEE
T ss_pred cEEEeehhc------CHHHHHHHHHHhcCCCCEEE
Confidence 999998772 23355566888999984444
No 230
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.60 E-value=0.0086 Score=61.93 Aligned_cols=119 Identities=14% Similarity=0.086 Sum_probs=76.6
Q ss_pred HHHHHHHhhc--CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 683 VEYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 683 ve~Ild~L~~--~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
.+.+.+.+.. ..+.+|||+=||+|.++.+.+.+|. .+|+.||.++..+...++++.... ....+.
T Consensus 29 realFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~-----------~~~~~~ 95 (183)
T PF03602_consen 29 REALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLG-----------LEDKIR 95 (183)
T ss_dssp HHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT------------GGGEE
T ss_pred HHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhC-----------CCccee
Confidence 3455566654 4789999999999999998888884 899999999999999998876421 122689
Q ss_pred EEEcCccccC----CCCCCccEEEEccccccCChhHHHHHHHHHH--HccCCC-EEEEEecCC
Q 002345 761 LFDGSITVFD----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVL--SSFRPR-ILIVSTPNY 816 (933)
Q Consensus 761 fi~GDaedLp----~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~--rlLKPG-~LIITTPN~ 816 (933)
++.+|+...- .....||+|++-==.. .. .....+.+.+. .+|+++ .+++.+...
T Consensus 96 v~~~d~~~~l~~~~~~~~~fDiIflDPPY~-~~-~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 96 VIKGDAFKFLLKLAKKGEKFDIIFLDPPYA-KG-LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEESSHHHHHHHHHHCTS-EEEEEE--STT-SC-HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred eeccCHHHHHHhhcccCCCceEEEECCCcc-cc-hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 9999965422 1357899998842111 11 11122223344 788998 666666554
No 231
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=96.56 E-value=0.0069 Score=50.64 Aligned_cols=37 Identities=30% Similarity=0.229 Sum_probs=33.3
Q ss_pred ceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002345 56 CLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (933)
Q Consensus 56 ~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~ 92 (933)
..|+|.+.+.+..+.+|.-+.||+|||.||+.||++|
T Consensus 32 ~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 32 PRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 4899999999877777888899999999999999986
No 232
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.011 Score=61.82 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=59.0
Q ss_pred hhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 690 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 690 L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
++.....-++|||||+|..+..|++.-++.....+.|+++.+++...+.+.. +..+++.++.|+..-
T Consensus 39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-------------n~~~~~~V~tdl~~~ 105 (209)
T KOG3191|consen 39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-------------NRVHIDVVRTDLLSG 105 (209)
T ss_pred HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-------------cCCccceeehhHHhh
Confidence 3444577899999999999999987655667899999999999887665431 223577888887653
Q ss_pred CCCCCCccEEEEcc
Q 002345 770 DSRLHGFDIGTCLE 783 (933)
Q Consensus 770 p~~~~sFDlVVc~e 783 (933)
- +.++.|+++.+=
T Consensus 106 l-~~~~VDvLvfNP 118 (209)
T KOG3191|consen 106 L-RNESVDVLVFNP 118 (209)
T ss_pred h-ccCCccEEEECC
Confidence 2 237888888753
No 233
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.44 E-value=0.0065 Score=65.51 Aligned_cols=123 Identities=13% Similarity=0.059 Sum_probs=83.5
Q ss_pred cCCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002345 674 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 753 (933)
Q Consensus 674 F~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr 753 (933)
...|+...+.. ...++..++.+|||...|-|.++...+++|. .+|+-|+.++..|+.|. ++.- .+.
T Consensus 116 ~tdP~~Dt~~K--v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~--lNPw--------Sr~ 181 (287)
T COG2521 116 GTDPLEDTLAK--VELVKVKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAK--LNPW--------SRE 181 (287)
T ss_pred CcCcHHHHHhh--hheeccccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeec--cCCC--------Ccc
Confidence 44455444332 2344455789999999999999999999983 59999999999999984 2221 111
Q ss_pred CCCccEEEEEcCcccc--CCCCCCccEEEEcc-cc---ccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 754 TDVKSAVLFDGSITVF--DSRLHGFDIGTCLE-VI---EHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 754 ~~~~nVefi~GDaedL--p~~~~sFDlVVc~e-VL---EHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
.....++++.||+.+. ++.+.+||+|+--= -+ -++. ...|-++++|+|||| .++=-+
T Consensus 182 l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLY---seefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 182 LFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELY---SEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred ccccccEEecccHHHHHhcCCccccceEeeCCCccchhhhHh---HHHHHHHHHHHcCcCCcEEEEe
Confidence 2233689999999874 56788999987411 01 1222 134555799999999 665433
No 234
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.44 E-value=0.027 Score=62.14 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=60.9
Q ss_pred CCEEEEEcCCcChHHH-HHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 695 ATTLVDFGCGSGSLLD-SLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~-~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
+.+|+=||+|.=-++. .|++..+....|+++|+++++++.|++.+.... +-..++.|+.+|..+.+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~----------~L~~~m~f~~~d~~~~~~dl 190 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL----------GLSKRMSFITADVLDVTYDL 190 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH-------------HH-SSEEEEES-GGGG-GG-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc----------cccCCeEEEecchhcccccc
Confidence 4699999999776654 444432222679999999999999988765211 11347899999998877667
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
..||+|+......--..+ ...+.+++.+.++|| .+++=
T Consensus 191 ~~~DvV~lAalVg~~~e~-K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 191 KEYDVVFLAALVGMDAEP-KEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp ---SEEEE-TT-S----S-HHHHHHHHHHHS-TTSEEEEE
T ss_pred ccCCEEEEhhhcccccch-HHHHHHHHHhhCCCCcEEEEe
Confidence 799999988766544433 445555799999999 66654
No 235
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.43 E-value=0.00064 Score=71.86 Aligned_cols=87 Identities=17% Similarity=0.256 Sum_probs=64.3
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
.+.++||+|.|.|..+..++... .+|.+.+.|..|..+.+++ +. +| + ...+....+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk----------------~y-nV--l--~~~ew~~t~ 167 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK----------------NY-NV--L--TEIEWLQTD 167 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc----------------CC-ce--e--eehhhhhcC
Confidence 35799999999999999998875 7899999999999887543 11 11 1 111122223
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCC
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRP 806 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKP 806 (933)
-+||+|.|..++.--. ++...+.+ +..+|+|
T Consensus 168 ~k~dli~clNlLDRc~-~p~kLL~D-i~~vl~p 198 (288)
T KOG3987|consen 168 VKLDLILCLNLLDRCF-DPFKLLED-IHLVLAP 198 (288)
T ss_pred ceeehHHHHHHHHhhc-ChHHHHHH-HHHHhcc
Confidence 4799999999997766 66666665 9999999
No 236
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.37 E-value=0.01 Score=69.79 Aligned_cols=73 Identities=21% Similarity=0.294 Sum_probs=60.7
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
-+..+-+.+....++.+||+-||+|.+...+++.. .+|+||++++..++-|+.++. .++..|.+|
T Consensus 371 Lys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~------------~NgisNa~F 435 (534)
T KOG2187|consen 371 LYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQ------------INGISNATF 435 (534)
T ss_pred HHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcch------------hcCccceee
Confidence 44556666666677899999999999999999875 799999999999999987754 457889999
Q ss_pred EEcCcccc
Q 002345 762 FDGSITVF 769 (933)
Q Consensus 762 i~GDaedL 769 (933)
++|-++++
T Consensus 436 i~gqaE~~ 443 (534)
T KOG2187|consen 436 IVGQAEDL 443 (534)
T ss_pred eecchhhc
Confidence 99966653
No 237
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.31 E-value=0.054 Score=58.40 Aligned_cols=116 Identities=12% Similarity=0.141 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002345 680 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759 (933)
Q Consensus 680 ~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV 759 (933)
.....++...++...++++||||.=+|.-+..+|..-+...+|+++|++++..+.+.+..+. .+-...|
T Consensus 59 ~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~-----------agv~~KI 127 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKL-----------AGVDHKI 127 (237)
T ss_pred hHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHh-----------cccccee
Confidence 34455666667777899999999988887666665443447999999999999999665442 1234579
Q ss_pred EEEEcCcccc------CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002345 760 VLFDGSITVF------DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 760 efi~GDaedL------p~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LII 811 (933)
++++|++.+- ....+.||.++. .|-.+.-. .+.+.+.+++|+|++++
T Consensus 128 ~~i~g~a~esLd~l~~~~~~~tfDfaFv----DadK~nY~-~y~e~~l~Llr~GGvi~ 180 (237)
T KOG1663|consen 128 TFIEGPALESLDELLADGESGTFDFAFV----DADKDNYS-NYYERLLRLLRVGGVIV 180 (237)
T ss_pred eeeecchhhhHHHHHhcCCCCceeEEEE----ccchHHHH-HHHHHHHhhcccccEEE
Confidence 9999988652 124578999975 45543333 44456999999995544
No 238
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.16 E-value=0.018 Score=60.88 Aligned_cols=103 Identities=17% Similarity=0.065 Sum_probs=64.8
Q ss_pred EEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCcc
Q 002345 698 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFD 777 (933)
Q Consensus 698 VLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~sFD 777 (933)
|.||||--|.+...|.+.+ ...+++++|+++..++.|++.+.. .+....+++..+|..+.-.+....|
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~-----------~~l~~~i~~rlgdGL~~l~~~e~~d 68 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAK-----------YGLEDRIEVRLGDGLEVLKPGEDVD 68 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHH-----------TT-TTTEEEEE-SGGGG--GGG---
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHH-----------cCCcccEEEEECCcccccCCCCCCC
Confidence 6899999999999999998 356899999999999999998863 1234579999999765322333478
Q ss_pred EEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCC
Q 002345 778 IGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 816 (933)
Q Consensus 778 lVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~ 816 (933)
+|+..++ .......+.+.....++...-+|--|+.
T Consensus 69 ~ivIAGM----GG~lI~~ILe~~~~~~~~~~~lILqP~~ 103 (205)
T PF04816_consen 69 TIVIAGM----GGELIIEILEAGPEKLSSAKRLILQPNT 103 (205)
T ss_dssp EEEEEEE-----HHHHHHHHHHTGGGGTT--EEEEEESS
T ss_pred EEEEecC----CHHHHHHHHHhhHHHhccCCeEEEeCCC
Confidence 8887665 2222233333344445444344445654
No 239
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.13 E-value=0.0026 Score=64.81 Aligned_cols=93 Identities=15% Similarity=0.061 Sum_probs=63.7
Q ss_pred ccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhcccccc
Q 002345 768 VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFR 846 (933)
Q Consensus 768 dLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~~~fR 846 (933)
...|.+++.|+|++-+|+||+..++...+.+.++++|||| .+-|++|...|-...-... .+.+ ...+--
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~-----vqvg-----gpgpnd 109 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHD-----VQVG-----GPGPND 109 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhh-----hhcc-----CCCCCC
Confidence 3467788999999999999999888888888899999999 9999999987644321110 0101 112334
Q ss_pred CCCcccccCHHHHHHHHHHHHHHcCcEE
Q 002345 847 NHDHKFEWTRDQFNCWATELAARHNYSV 874 (933)
Q Consensus 847 h~DHkFeWTreEF~~Was~LA~r~GYsV 874 (933)
|++|++-.+...+. +.....++.+
T Consensus 110 hP~~r~v~t~r~m~----n~~m~~~~~~ 133 (185)
T COG4627 110 HPLHRIVKTMRMMF----NGFMDAGFVV 133 (185)
T ss_pred CcHHHHHHHHHHHH----HHHHhhhhee
Confidence 66777766666655 3444445544
No 240
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.037 Score=62.79 Aligned_cols=119 Identities=17% Similarity=0.184 Sum_probs=83.3
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCC-CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA-LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~-f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+....+...++.+|||+..+.|.=+..+++.... -..|+++|+++.-++..+++++ +.+..++....
T Consensus 147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~------------RlG~~nv~~~~ 214 (355)
T COG0144 147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLK------------RLGVRNVIVVN 214 (355)
T ss_pred HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHH------------HcCCCceEEEe
Confidence 3445667778899999999999988888776521 1347999999999999988876 45667788888
Q ss_pred cCccccCCC---CCCccEEEE------ccccccCC-------hh-------HHHHHHHHHHHccCCC-EEEEEecC
Q 002345 764 GSITVFDSR---LHGFDIGTC------LEVIEHME-------ED-------EASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 764 GDaedLp~~---~~sFDlVVc------~eVLEHLp-------dD-------~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.|...++.. ...||.|+. .+++.-=| .. ....+.+.+.++|||| .++-+|-.
T Consensus 215 ~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 215 KDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred cccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 887654422 225999997 33442222 11 1134445688999999 77777754
No 241
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.034 Score=61.23 Aligned_cols=122 Identities=11% Similarity=0.053 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 678 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 678 Ly~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
+|..-..+|+..|...++.+|+|-|.|+|.+...+++.-++-.+++-+|+.+.-.+.|++.... .+...
T Consensus 89 ~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~-----------hgi~~ 157 (314)
T KOG2915|consen 89 LYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFRE-----------HGIGD 157 (314)
T ss_pred EecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHH-----------hCCCc
Confidence 3444456788899999999999999999999999998776778999999998888888776542 12456
Q ss_pred cEEEEEcCccccCCC--CCCccEEEEccccccCChhHHHHHHHHHHHccCCC--EEEEEecCCc
Q 002345 758 SAVLFDGSITVFDSR--LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPNYE 817 (933)
Q Consensus 758 nVefi~GDaedLp~~--~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG--~LIITTPN~e 817 (933)
++++.+.|+....+. ...+|+|+.- +| .+-.++.. ++.+||.+ +++--+|+.+
T Consensus 158 ~vt~~hrDVc~~GF~~ks~~aDaVFLD-----lP-aPw~AiPh-a~~~lk~~g~r~csFSPCIE 214 (314)
T KOG2915|consen 158 NVTVTHRDVCGSGFLIKSLKADAVFLD-----LP-APWEAIPH-AAKILKDEGGRLCSFSPCIE 214 (314)
T ss_pred ceEEEEeecccCCccccccccceEEEc-----CC-Chhhhhhh-hHHHhhhcCceEEeccHHHH
Confidence 899999999775443 4678888764 44 33345543 66677775 6666677765
No 242
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.99 E-value=0.12 Score=54.35 Aligned_cols=120 Identities=13% Similarity=0.053 Sum_probs=82.4
Q ss_pred HHHHHHHhhc--CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 683 VEYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 683 ve~Ild~L~~--~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
.+.+.+.+.. ..+.++||+=+|+|.+....+.+|. ..++.||.+...+...++++... ....++.
T Consensus 30 REalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l-----------~~~~~~~ 96 (187)
T COG0742 30 REALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKAL-----------GLEGEAR 96 (187)
T ss_pred HHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHh-----------CCccceE
Confidence 3556666664 5789999999999999998888875 89999999999999999887632 1235788
Q ss_pred EEEcCccccC-CCC--CCccEEEEccccc--cCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 761 LFDGSITVFD-SRL--HGFDIGTCLEVIE--HMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 761 fi~GDaedLp-~~~--~sFDlVVc~eVLE--HLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
++.+|+...- ... ..||+|+.-==.+ .++ .......-.-..+|+|+ .+++.+...
T Consensus 97 ~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~-~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 97 VLRNDALRALKQLGTREPFDLVFLDPPYAKGLLD-KELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred EEeecHHHHHHhcCCCCcccEEEeCCCCccchhh-HHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 9999987431 112 2499999843333 221 22222221135789999 666655543
No 243
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.80 E-value=0.035 Score=65.11 Aligned_cols=102 Identities=18% Similarity=0.245 Sum_probs=82.3
Q ss_pred EEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCc
Q 002345 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGF 776 (933)
Q Consensus 697 rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~sF 776 (933)
++|-+|||.-.+...+.+-| +..|+-+|+|+-.++....+.+ ...+-..+...|+..+.+++.+|
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~-------------~~~~~~~~~~~d~~~l~fedESF 115 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNA-------------KERPEMQMVEMDMDQLVFEDESF 115 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccc-------------cCCcceEEEEecchhccCCCcce
Confidence 89999999999999998887 5899999999998887755421 13456899999999999999999
Q ss_pred cEEEEccccccCChhHHHHH--------HHHHHHccCCC--EEEEEe
Q 002345 777 DIGTCLEVIEHMEEDEASQF--------GNIVLSSFRPR--ILIVST 813 (933)
Q Consensus 777 DlVVc~eVLEHLpdD~l~aL--------~eeI~rlLKPG--~LIITT 813 (933)
|+|+-...++|+-.+..+.+ ..++.++++|| .+.|+.
T Consensus 116 diVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 116 DIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred eEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 99999999999874443333 45689999998 444444
No 244
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.69 E-value=0.039 Score=60.06 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
.+.+|+|||||-=-++....... +...++|+||+..+++...+.+.. ...+.+....|+..-+ ..
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~-------------l~~~~~~~v~Dl~~~~-~~ 169 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAV-------------LGVPHDARVRDLLSDP-PK 169 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHH-------------TT-CEEEEEE-TTTSH-TT
T ss_pred CCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHh-------------hCCCcceeEeeeeccC-CC
Confidence 47899999999988877665544 236999999999999998776542 1235666667776543 34
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 817 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~e 817 (933)
...|+.+..=+++-+.......-. .+...++-..++|+.|-..
T Consensus 170 ~~~DlaLllK~lp~le~q~~g~g~-~ll~~~~~~~~vVSfPtrS 212 (251)
T PF07091_consen 170 EPADLALLLKTLPCLERQRRGAGL-ELLDALRSPHVVVSFPTRS 212 (251)
T ss_dssp SEESEEEEET-HHHHHHHSTTHHH-HHHHHSCESEEEEEEES--
T ss_pred CCcchhhHHHHHHHHHHHhcchHH-HHHHHhCCCeEEEeccccc
Confidence 579999999998888633333323 3666777669999999754
No 245
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.67 E-value=0.035 Score=61.09 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=83.1
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
..+...+...++.+|||+.+|.|.-+..+++....-..|++.|+++.-+...++++. +.+..++....
T Consensus 75 ~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~------------r~g~~~v~~~~ 142 (283)
T PF01189_consen 75 QLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLK------------RLGVFNVIVIN 142 (283)
T ss_dssp HHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHH------------HTT-SSEEEEE
T ss_pred ccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHH------------hcCCceEEEEe
Confidence 334455667788999999999999888777654334699999999999998888776 34667888888
Q ss_pred cCccccC--CCCCCccEEEE------ccccccCCh--------------hHHHHHHHHHHHcc----CCC-EEEEEec
Q 002345 764 GSITVFD--SRLHGFDIGTC------LEVIEHMEE--------------DEASQFGNIVLSSF----RPR-ILIVSTP 814 (933)
Q Consensus 764 GDaedLp--~~~~sFDlVVc------~eVLEHLpd--------------D~l~aL~eeI~rlL----KPG-~LIITTP 814 (933)
.|..... .....||.|+. ..++.+-++ .....+.+.+.+++ +|| .++-+|-
T Consensus 143 ~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 143 ADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp SHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred eccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 8887652 22346999997 334443331 11124455688999 999 6665654
No 246
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.66 E-value=0.11 Score=55.25 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=70.9
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 771 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~-- 771 (933)
++..|+|+|+-.|.++..+++..+.-..|+|+|+.+- ...++|.++++|+++.+.
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------------------~~~~~V~~iq~d~~~~~~~~ 101 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------------------KPIPGVIFLQGDITDEDTLE 101 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------------------ccCCCceEEeeeccCccHHH
Confidence 5789999999999999999887643345999998762 123469999999987543
Q ss_pred ------CCCCccEEEEccc--------cccCChhHH-HHHHHHHHHccCCC-EEEEEec-CCchhHHHHh
Q 002345 772 ------RLHGFDIGTCLEV--------IEHMEEDEA-SQFGNIVLSSFRPR-ILIVSTP-NYEYNAILQK 824 (933)
Q Consensus 772 ------~~~sFDlVVc~eV--------LEHLpdD~l-~aL~eeI~rlLKPG-~LIITTP-N~efNs~f~~ 824 (933)
....+|+|++-+. +.|...-.+ ....+.+..+|+|| .+++-+- -.+++.++..
T Consensus 102 ~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~ 171 (205)
T COG0293 102 KLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKA 171 (205)
T ss_pred HHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHH
Confidence 2344799998443 244432222 22334456799999 5554433 3445555443
No 247
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.60 E-value=0.069 Score=57.30 Aligned_cols=119 Identities=11% Similarity=0.037 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002345 680 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759 (933)
Q Consensus 680 ~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV 759 (933)
..|+..+.+.++ .+.++.||||=-|.+..+|.+.+ +...+++.|+++..++.|.+++.+ ......+
T Consensus 4 ~~RL~~va~~V~--~~~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~-----------~~l~~~i 69 (226)
T COG2384 4 SKRLTTVANLVK--QGARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKK-----------NNLSERI 69 (226)
T ss_pred hHHHHHHHHHHH--cCCceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHh-----------cCCcceE
Confidence 467788888877 44459999999999999999887 468899999999999999988764 2345688
Q ss_pred EEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCC
Q 002345 760 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 816 (933)
Q Consensus 760 efi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~ 816 (933)
+...+|....-..+..+|+|+..++ ...-...+.++-...|+.-.-+|--||.
T Consensus 70 ~vr~~dgl~~l~~~d~~d~ivIAGM----GG~lI~~ILee~~~~l~~~~rlILQPn~ 122 (226)
T COG2384 70 DVRLGDGLAVLELEDEIDVIVIAGM----GGTLIREILEEGKEKLKGVERLILQPNI 122 (226)
T ss_pred EEeccCCccccCccCCcCEEEEeCC----cHHHHHHHHHHhhhhhcCcceEEECCCC
Confidence 9999998543334457999887654 3222233333344444422334445664
No 248
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.55 E-value=0.043 Score=58.63 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=68.2
Q ss_pred CCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCC
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 774 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~ 774 (933)
+.+++|||.|.|..+..|+=.. +..+|+-+|...+-+..-+...+ ..+.+|++++++-++++.....
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~------------eL~L~nv~i~~~RaE~~~~~~~ 134 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKK------------ELGLENVEIVHGRAEEFGQEKK 134 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHH------------HhCCCCeEEehhhHhhcccccc
Confidence 5899999999999988877333 22569999988876665554333 2356789999999998864322
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCC
Q 002345 775 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 807 (933)
Q Consensus 775 sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG 807 (933)
.||+|++..+ ..+..+.+-+..++++|
T Consensus 135 ~~D~vtsRAv------a~L~~l~e~~~pllk~~ 161 (215)
T COG0357 135 QYDVVTSRAV------ASLNVLLELCLPLLKVG 161 (215)
T ss_pred cCcEEEeehc------cchHHHHHHHHHhcccC
Confidence 2999999876 23344555677888987
No 249
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.45 E-value=0.041 Score=61.50 Aligned_cols=85 Identities=13% Similarity=0.170 Sum_probs=65.4
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
++.+++.+...++..++|.-||.|..+..+++..+. .+|+|+|.++.+++.|++++.. ...++.++
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~-------------~~~R~~~i 74 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSD-------------FEGRVVLI 74 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhh-------------cCCcEEEE
Confidence 455667776667889999999999999988876423 7999999999999999887652 12378899
Q ss_pred EcCccccCC-----CCCCccEEEE
Q 002345 763 DGSITVFDS-----RLHGFDIGTC 781 (933)
Q Consensus 763 ~GDaedLp~-----~~~sFDlVVc 781 (933)
+++..++.. ...++|.|++
T Consensus 75 ~~nF~~l~~~l~~~~~~~vDgIl~ 98 (305)
T TIGR00006 75 HDNFANFFEHLDELLVTKIDGILV 98 (305)
T ss_pred eCCHHHHHHHHHhcCCCcccEEEE
Confidence 998876532 2246788776
No 250
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.40 E-value=0.049 Score=59.54 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=67.9
Q ss_pred CCCEEEEEcCCcChHHH-HHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcc-----cc---cCCC-CC-------C-
Q 002345 694 CATTLVDFGCGSGSLLD-SLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK-----LD---AAVP-CT-------D- 755 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~-~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~-----~~---~~~P-r~-------~- 755 (933)
++.++||||||.-.+-. .+.+. +.+|+..|.++..++..++.++.. ... -. .++. +. .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~---f~~I~l~dy~~~N~~el~kWl~~~-~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW---FEEIVLSDYSEQNREELEKWLRKE-GAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT---EEEEEEEESSHHHHHHHHHHHTT--TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh---hcceEEeeccHhhHHHHHHHHCCC-CCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 56799999999855432 22233 589999999999988777766542 100 00 0000 00 0
Q ss_pred CccE-EEEEcCccccCCC------CCCccEEEEccccccCChhHH--HHHHHHHHHccCCC--EEEEEecCC
Q 002345 756 VKSA-VLFDGSITVFDSR------LHGFDIGTCLEVIEHMEEDEA--SQFGNIVLSSFRPR--ILIVSTPNY 816 (933)
Q Consensus 756 ~~nV-efi~GDaedLp~~------~~sFDlVVc~eVLEHLpdD~l--~aL~eeI~rlLKPG--~LIITTPN~ 816 (933)
...| .++.+|+...+.- ...||+|++..++|-.-.+.. ....+++.++|||| .+++...+.
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~ 203 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGS 203 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCc
Confidence 0123 4778898774432 124999999999998874332 33345689999999 444455553
No 251
>PRK12371 ribonuclease III; Reviewed
Probab=95.36 E-value=0.036 Score=59.69 Aligned_cols=69 Identities=26% Similarity=0.350 Sum_probs=50.4
Q ss_pred CCChHhHHHHh----ccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHH
Q 002345 15 KLTPKAIIVQK----FGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALE 90 (933)
Q Consensus 15 ~~tpka~~~q~----~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~ 90 (933)
..-||-.+.+. .+..-.|++.+.. . |+.. -.|.|.+.+.+-...+|.=+.||+|||.||+.||+
T Consensus 160 ~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~-G----------p~h~-~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~ 227 (235)
T PRK12371 160 RRDAKTELQEWAHAQFGVTPVYRVDSRS-G----------PDHD-PRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLE 227 (235)
T ss_pred cCCHHHHHHHHHHhcCCCCCeEEEEEee-c----------CCCC-CeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHH
Confidence 44677665433 3444678876422 1 2333 39999999988766678889999999999999999
Q ss_pred HcCCC
Q 002345 91 KLGID 95 (933)
Q Consensus 91 k~g~~ 95 (933)
+||++
T Consensus 228 ~~~~~ 232 (235)
T PRK12371 228 REGVW 232 (235)
T ss_pred Hhhhh
Confidence 99984
No 252
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=95.32 E-value=0.035 Score=57.92 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=35.7
Q ss_pred CCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002345 52 QKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (933)
Q Consensus 52 q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~ 92 (933)
...| .|.|.+.+.+-...+|.=+-||.|||.||+.||++|
T Consensus 136 ~H~p-~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L 175 (183)
T PHA03103 136 SHSP-TFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKI 175 (183)
T ss_pred CCCc-eEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHH
Confidence 3355 899999999988888888999999999999999997
No 253
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.29 E-value=0.075 Score=57.61 Aligned_cols=112 Identities=16% Similarity=0.250 Sum_probs=74.7
Q ss_pred HHHHHHHHhhc-CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE-
Q 002345 682 RVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA- 759 (933)
Q Consensus 682 Rve~Ild~L~~-~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV- 759 (933)
.+..+++.... .++..+||||..||.|+..+.++|. ..|+|||.....|..--+ ..+++
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR-----------------~d~rV~ 126 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLR-----------------NDPRVI 126 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHh-----------------cCCcEE
Confidence 34444455443 4688999999999999999999985 899999999887766522 22344
Q ss_pred EEEEcCccccCCC--CCCccEEEEccccccCChhHHHHHHHHHHHccCCC--EEEEEecCCc
Q 002345 760 VLFDGSITVFDSR--LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPNYE 817 (933)
Q Consensus 760 efi~GDaedLp~~--~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG--~LIITTPN~e 817 (933)
.+...++..+... .+..|+++|--.+.-+. .+...+..+++|+ .+.+.-|..+
T Consensus 127 ~~E~tN~r~l~~~~~~~~~d~~v~DvSFISL~-----~iLp~l~~l~~~~~~~v~LvKPQFE 183 (245)
T COG1189 127 VLERTNVRYLTPEDFTEKPDLIVIDVSFISLK-----LILPALLLLLKDGGDLVLLVKPQFE 183 (245)
T ss_pred EEecCChhhCCHHHcccCCCeEEEEeehhhHH-----HHHHHHHHhcCCCceEEEEecchhh
Confidence 3444466554332 23688999866654433 3334588899998 5555556544
No 254
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=95.27 E-value=0.02 Score=51.86 Aligned_cols=63 Identities=32% Similarity=0.513 Sum_probs=58.1
Q ss_pred ccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccccc
Q 002345 578 IYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCK 641 (933)
Q Consensus 578 ~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~r 641 (933)
..|+.|+.|.|+|++.+. +|+.+++....+++|+|.+|.+.+..-++..|..|++|....+..
T Consensus 3 ~~~~~gd~V~i~y~~~~~-~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~v 65 (94)
T PF00254_consen 3 RTPKEGDTVTIHYTGRLE-DGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYV 65 (94)
T ss_dssp SSBSTTSEEEEEEEEEET-TSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEE
T ss_pred ccCCCCCEEEEEEEEEEC-CCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEe
Confidence 458999999999999998 799988888889999999999999999999999999999998883
No 255
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=95.21 E-value=0.038 Score=57.58 Aligned_cols=69 Identities=22% Similarity=0.256 Sum_probs=50.2
Q ss_pred CCChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHH
Q 002345 15 KLTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEK 91 (933)
Q Consensus 15 ~~tpka~~~---q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k 91 (933)
..-||-.+. |+.|..-.|++.+.. - |.-.| .|.+.+-+-+....+|.=+-||+|||.||+.||++
T Consensus 107 ~~DpKS~LQE~~Q~~~~~l~Y~li~~~--G---------pdH~~-~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~ 174 (183)
T PHA02701 107 TLNPVSAVNEFCMRTHRPLEFCETRSG--G---------HDHCP-LFTCTIVVSGKVVATASGCSKKLARHAACADALTI 174 (183)
T ss_pred CCCccHHHHHHHHhcCCCCeEEEEEeE--C---------CCCCc-eEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 456776654 455554578654322 1 33344 89999999887777888899999999999999999
Q ss_pred cCCC
Q 002345 92 LGID 95 (933)
Q Consensus 92 ~g~~ 95 (933)
|...
T Consensus 175 L~~~ 178 (183)
T PHA02701 175 LINN 178 (183)
T ss_pred HHhh
Confidence 8543
No 256
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.08 E-value=0.16 Score=57.99 Aligned_cols=110 Identities=17% Similarity=0.212 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-CC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-SR 772 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp-~~ 772 (933)
...+||-+|-|+|.-++.|.+.+ .+.+|+-||++|+|++.+++..--+. . .+..-..++++++..|+..+- ..
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~--~---N~~sf~dpRv~Vv~dDAf~wlr~a 362 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRA--L---NQGSFSDPRVTVVNDDAFQWLRTA 362 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhh--h---ccCCccCCeeEEEeccHHHHHHhh
Confidence 45789999999999999999986 47999999999999999985432110 0 001235678999999987643 23
Q ss_pred CCCccEEEEc------cccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 773 LHGFDIGTCL------EVIEHMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 773 ~~sFDlVVc~------eVLEHLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
...||+|+.- .++--+... +.+ .-+.+.|++++++|.
T Consensus 363 ~~~fD~vIVDl~DP~tps~~rlYS~--eFY-~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 363 ADMFDVVIVDLPDPSTPSIGRLYSV--EFY-RLLSRHLAETGLMVV 405 (508)
T ss_pred cccccEEEEeCCCCCCcchhhhhhH--HHH-HHHHHhcCcCceEEE
Confidence 4589998862 223222211 233 347888999844443
No 257
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=95.05 E-value=0.038 Score=57.21 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=63.9
Q ss_pred cCCCCceeEe-ecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcc
Q 002345 560 AIPEHGIYCL-SIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSAC 638 (933)
Q Consensus 560 ~~~~~~~~~~-~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsif 638 (933)
.....++... ..++...|..|..|+.|.++|++++.+ |+.+++..+ ...++|.+|++.|..-++..+..|++|..+.
T Consensus 65 ~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~d-G~v~~ss~~-~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~ 142 (177)
T TIGR03516 65 ETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALD-GDVIYSEEE-LGPQTYKVDQQDLFSGLRDGLKLMKEGETAT 142 (177)
T ss_pred eECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCC-CCEEEeCCC-CCCEEEEeCCcchhHHHHHHHcCCCCCCEEE
Confidence 3444454443 224556677899999999999999986 888776665 4589999999999999999999999999999
Q ss_pred cc
Q 002345 639 FC 640 (933)
Q Consensus 639 f~ 640 (933)
+.
T Consensus 143 ~~ 144 (177)
T TIGR03516 143 FL 144 (177)
T ss_pred EE
Confidence 88
No 258
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.16 E-value=0.24 Score=53.43 Aligned_cols=105 Identities=13% Similarity=0.096 Sum_probs=70.8
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
..++.+||-+|.++|.....++..-++-..|.||+.|+...+..-...+ .-+||--+.+|+.....
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~--------------~R~NIiPIl~DAr~P~~ 136 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAK--------------KRPNIIPILEDARHPEK 136 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH--------------HSTTEEEEES-TTSGGG
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhc--------------cCCceeeeeccCCChHH
Confidence 4578899999999999998888754344689999999965443332222 12478888889876432
Q ss_pred ---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 772 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 772 ---~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
--..+|+|++--. .+++...+..++...||+| .+++...
T Consensus 137 Y~~lv~~VDvI~~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 137 YRMLVEMVDVIFQDVA----QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp GTTTS--EEEEEEE-S----STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcccccccEEEecCC----ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 2357999988533 2477888888899999999 6666543
No 259
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.12 E-value=0.22 Score=55.77 Aligned_cols=97 Identities=19% Similarity=0.156 Sum_probs=50.9
Q ss_pred HHHHH---HHHHhhcCC-----CCEEEEEcCCcChHHHHHh-cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC
Q 002345 681 QRVEY---ALQHIKESC-----ATTLVDFGCGSGSLLDSLL-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV 751 (933)
Q Consensus 681 qRve~---Ild~L~~~~-----g~rVLDIGCGtG~fL~~LA-r~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~ 751 (933)
.|+++ +.+.+.... .-++||||+|.-..-..|. +..+ .+++|.||++..++.|++.+....
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~--W~fvaTdID~~sl~~A~~nv~~N~-------- 150 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYG--WSFVATDIDPKSLESARENVERNP-------- 150 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT---------
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcC--CeEEEecCCHHHHHHHHHHHHhcc--------
Confidence 45555 445554322 3589999999876544443 2222 699999999999999999887421
Q ss_pred CCCCCccEEEEEcCccc-----cCCCCCCccEEEEccccccCC
Q 002345 752 PCTDVKSAVLFDGSITV-----FDSRLHGFDIGTCLEVIEHME 789 (933)
Q Consensus 752 Pr~~~~nVefi~GDaed-----Lp~~~~sFDlVVc~eVLEHLp 789 (933)
....+|+++...-.. +......||+.+|+==++--.
T Consensus 151 --~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 151 --NLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp --T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----SS-
T ss_pred --ccccceEEEEcCCccccchhhhcccceeeEEecCCccccCh
Confidence 123467777553221 112235799999986665554
No 260
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=94.09 E-value=0.37 Score=55.29 Aligned_cols=125 Identities=18% Similarity=0.313 Sum_probs=83.7
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcCh----HHHHHhcCC--CCCceEEEEeC----ChHHHHHHHHHHhhhhhcccccCCCC
Q 002345 684 EYALQHIKESCATTLVDFGCGSGS----LLDSLLDYP--TALEKIVGVDI----SQKSLSRAAKIIHSKLSKKLDAAVPC 753 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~----fL~~LAr~g--~~f~~VtGVDI----S~emLe~ArkrL~a~ls~~~~~~~Pr 753 (933)
+.|++.+...+.-.|+|+|.|.|. ++..|+.+. ++--+||||+. +...++.+.+++.......
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~l------- 172 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSL------- 172 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHc-------
Confidence 446666666666789999999996 566677653 34568999999 8888988888887665432
Q ss_pred CCCccEEEEE---cCccccC-----CCCCCccEEEEccccccCCh------hHHHHHHHHHHHccCCCEEEEEecCCch
Q 002345 754 TDVKSAVLFD---GSITVFD-----SRLHGFDIGTCLEVIEHMEE------DEASQFGNIVLSSFRPRILIVSTPNYEY 818 (933)
Q Consensus 754 ~~~~nVefi~---GDaedLp-----~~~~sFDlVVc~eVLEHLpd------D~l~aL~eeI~rlLKPG~LIITTPN~ef 818 (933)
+. ..+|.. .+++++. ...+.+=+|-|...+||+.+ .+...|.+ ..+.|+|.++++..++.++
T Consensus 173 -gv-~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv~~E~ea~~ 248 (374)
T PF03514_consen 173 -GV-PFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVVLVEQEADH 248 (374)
T ss_pred -Cc-cEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEEEEeecCCC
Confidence 21 234433 2333332 22334445557778899972 34566776 7789999988888876654
No 261
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=0.8 Score=50.36 Aligned_cols=133 Identities=20% Similarity=0.184 Sum_probs=86.2
Q ss_pred hhhcccCCchHHHHHHHHH------HHhhcCCCCEEEEEcCCcChHHHH----HhcCCCCCceEEEEeCChHHHHHHHHH
Q 002345 669 MEQALFSPPLSKQRVEYAL------QHIKESCATTLVDFGCGSGSLLDS----LLDYPTALEKIVGVDISQKSLSRAAKI 738 (933)
Q Consensus 669 ~e~~~F~PPLy~qRve~Il------d~L~~~~g~rVLDIGCGtG~fL~~----LAr~g~~f~~VtGVDIS~emLe~Arkr 738 (933)
.+++.--|.+|..|.+..+ +......+.+++|+|.|+..-++. ++.++ ...+.+.||+|+..|+...+.
T Consensus 47 Fe~I~~LPEYYpTRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~-~~~ryvpiDv~a~iL~~ta~a 125 (321)
T COG4301 47 FEQITRLPEYYPTRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRG-SLLRYVPIDVSASILRATATA 125 (321)
T ss_pred HHHHhccccccCchhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcC-CcceeeeecccHHHHHHHHHH
Confidence 4555555666655544321 222334678999999998875554 44544 346899999999998776554
Q ss_pred HhhhhhcccccCCCCCCCccEEEEEcCccc----cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 739 IHSKLSKKLDAAVPCTDVKSAVLFDGSITV----FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 739 L~a~ls~~~~~~~Pr~~~~nVefi~GDaed----Lp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
+... .....+.-+.+|.+. ++ ..+.==.++.-..|-.+.+++...|..++...++|| .+++.+
T Consensus 126 i~~~-----------y~~l~v~~l~~~~~~~La~~~-~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 126 ILRE-----------YPGLEVNALCGDYELALAELP-RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred HHHh-----------CCCCeEeehhhhHHHHHhccc-CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 4321 122356666777653 22 222223344455889999899988888999999999 777766
Q ss_pred c
Q 002345 814 P 814 (933)
Q Consensus 814 P 814 (933)
-
T Consensus 194 D 194 (321)
T COG4301 194 D 194 (321)
T ss_pred c
Confidence 4
No 262
>PRK10742 putative methyltransferase; Provisional
Probab=93.73 E-value=0.31 Score=53.33 Aligned_cols=95 Identities=9% Similarity=-0.064 Sum_probs=67.7
Q ss_pred HHHHHHhhcCCCC--EEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC---Ccc
Q 002345 684 EYALQHIKESCAT--TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD---VKS 758 (933)
Q Consensus 684 e~Ild~L~~~~g~--rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~---~~n 758 (933)
+.+.+.+...++. +|||.=+|.|..+..++..| .+|+++|-++.+....++.+...... +... ..+
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ra~~~------~~~~~~~~~r 146 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYAD------AEIGGWLQER 146 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHhhhc------cccchhhhce
Confidence 5677777666666 99999999999999999998 57999999998887777666531110 0111 147
Q ss_pred EEEEEcCccccCC-CCCCccEEEEcccccc
Q 002345 759 AVLFDGSITVFDS-RLHGFDIGTCLEVIEH 787 (933)
Q Consensus 759 Vefi~GDaedLp~-~~~sFDlVVc~eVLEH 787 (933)
++++++|..++-. ....||+|++-=.+.|
T Consensus 147 i~l~~~da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 147 LQLIHASSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred EEEEeCcHHHHHhhCCCCCcEEEECCCCCC
Confidence 8999999876422 2347999998444433
No 263
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.12 Score=54.72 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=66.9
Q ss_pred cCCCCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccc
Q 002345 560 AIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACF 639 (933)
Q Consensus 560 ~~~~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff 639 (933)
..+..++-...+.-+ .|--|+.|..|.+||+.+|.+ |+.++++.+++..|+|-++ .|+.-...-|..|.+|--..+
T Consensus 97 ~~~~sgl~y~~~~~G-~G~~~~~~~~V~vhY~G~l~~-G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l 172 (205)
T COG0545 97 KTLPSGLQYKVLKAG-DGAAPKKGDTVTVHYTGTLID-GTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKL 172 (205)
T ss_pred eECCCCcEEEEEecc-CCCCCCCCCEEEEEEEEecCC-CCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEE
Confidence 345556666666666 788899999999999999998 9999999999999999999 888888888999999988876
Q ss_pred c
Q 002345 640 C 640 (933)
Q Consensus 640 ~ 640 (933)
.
T Consensus 173 ~ 173 (205)
T COG0545 173 T 173 (205)
T ss_pred E
Confidence 6
No 264
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.076 Score=61.04 Aligned_cols=61 Identities=23% Similarity=0.402 Sum_probs=55.0
Q ss_pred CCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcc
Q 002345 576 SGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSAC 638 (933)
Q Consensus 576 ~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsif 638 (933)
+-..|.+|-.|.+|||.+|.+ |.++++.++ ++.|.|++|+|.|+.....-|.+|-.|++..
T Consensus 5 g~~~p~~g~~v~~hytg~l~d-gt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~g~~~~ 65 (397)
T KOG0543|consen 5 GTETPMTGDKVEVHYTGTLLD-GTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKKGEAGS 65 (397)
T ss_pred CccCCCCCceeEEEEeEEecC-CeecccccC-CCceeeecCCCccccccccccccccccccCC
Confidence 445699999999999999998 999999999 9999999999999999988899988776654
No 265
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=93.25 E-value=0.043 Score=50.58 Aligned_cols=98 Identities=19% Similarity=0.084 Sum_probs=37.3
Q ss_pred EEEcCCcChHHHHHhcCCCCC--ceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--CCCC
Q 002345 699 VDFGCGSGSLLDSLLDYPTAL--EKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--SRLH 774 (933)
Q Consensus 699 LDIGCGtG~fL~~LAr~g~~f--~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp--~~~~ 774 (933)
||||+..|..+..+++..... .+++++|+.+. .+.+++.++. .....++++++++..+.- ....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~-----------~~~~~~~~~~~g~s~~~l~~~~~~ 68 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKK-----------AGLSDRVEFIQGDSPDFLPSLPDG 68 (106)
T ss_dssp --------------------------EEEESS------------------------GGG-BTEEEEES-THHHHHHHHH-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhh-----------cCCCCeEEEEEcCcHHHHHHcCCC
Confidence 689999999887776543211 37999999985 2223222221 012246999999986531 1246
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002345 775 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 775 sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LII 811 (933)
.||+++.-. .|-.+.....+. .+...|+||.+++
T Consensus 69 ~~dli~iDg--~H~~~~~~~dl~-~~~~~l~~ggviv 102 (106)
T PF13578_consen 69 PIDLIFIDG--DHSYEAVLRDLE-NALPRLAPGGVIV 102 (106)
T ss_dssp -EEEEEEES-----HHHHHHHHH-HHGGGEEEEEEEE
T ss_pred CEEEEEECC--CCCHHHHHHHHH-HHHHHcCCCeEEE
Confidence 899998865 344444444554 5888999994443
No 266
>KOG2730 consensus Methylase [General function prediction only]
Probab=93.11 E-value=0.11 Score=55.89 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
....|+|.-||-|..+...+..+ ..|++||+++.-+..|+++++ .+ +-..+|+|++||+.++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNae-------iY----GI~~rItFI~GD~ld~ 155 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAE-------VY----GVPDRITFICGDFLDL 155 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccce-------ee----cCCceeEEEechHHHH
Confidence 56789999999999998888887 689999999999999988764 12 2344899999999764
No 267
>PRK00102 rnc ribonuclease III; Reviewed
Probab=93.05 E-value=0.2 Score=52.82 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=46.0
Q ss_pred CCCChHhHHHH---hcc-CceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHH
Q 002345 14 MKLTPKAIIVQ---KFG-RNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKAL 89 (933)
Q Consensus 14 ~~~tpka~~~q---~~g-~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al 89 (933)
....||..+++ +-| ..-.|++.+... |...| .|.|.+-+-+-.+-+|.-+-||+|||.||+.||
T Consensus 156 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g-----------~~~~~-~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al 223 (229)
T PRK00102 156 LVKDYKTRLQELLQGRGLPLPEYELVKEEG-----------PAHDK-EFTVEVTVNGKELGEGTGSSKKEAEQAAAKQAL 223 (229)
T ss_pred ccCCHHHHHHHHHHHcCCCCCceEEeeccC-----------CCCCc-eEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHH
Confidence 44567766554 333 335676653221 22223 688888887756666999999999999999999
Q ss_pred HHcC
Q 002345 90 EKLG 93 (933)
Q Consensus 90 ~k~g 93 (933)
++|.
T Consensus 224 ~~l~ 227 (229)
T PRK00102 224 KKLK 227 (229)
T ss_pred HHHh
Confidence 9985
No 268
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=93.04 E-value=0.1 Score=52.94 Aligned_cols=63 Identities=19% Similarity=0.360 Sum_probs=56.2
Q ss_pred CCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccccccCCch
Q 002345 581 SNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQ 646 (933)
Q Consensus 581 ~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~r~lP~~ 646 (933)
++|+.|.++|++.+.+ |+.+++..+++.+++|-+|++.|..-++..|..|.+|....+. +|+.
T Consensus 6 ~~~~~V~v~Y~~~~~d-G~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~--ipp~ 68 (156)
T PRK15095 6 QSNSAVLVHFTLKLDD-GSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFS--LEPE 68 (156)
T ss_pred CCCCEEEEEEEEEeCC-CCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEE--EChH
Confidence 8999999999999955 9888888777899999999999999999999999999988876 5553
No 269
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=92.70 E-value=0.12 Score=47.04 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=34.3
Q ss_pred CCceEEEeeecCCcee----------eeccccccchHHHHHHHHHHHHcC
Q 002345 54 GPCLYRCSLQLPEFSV----------VSETFKKKKDAEQSAAEKALEKLG 93 (933)
Q Consensus 54 ~~~~~~c~l~lp~~~v----------~~~~~~~kkdaeq~aa~~al~k~g 93 (933)
|..+|-|++.+|.... -+.....||||+.+||+.||..||
T Consensus 31 ~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 31 HRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred ccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 5569999999998754 237788999999999999999998
No 270
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.49 E-value=0.25 Score=56.32 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=65.2
Q ss_pred hcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 691 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 691 ~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
....+.++||+|.|.|.-+..+-...+....++-++.|+..-+..- .++... ......+...|++.--
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~-tl~~nv-----------~t~~td~r~s~vt~dR 177 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGD-TLAENV-----------STEKTDWRASDVTEDR 177 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHH-HHHhhc-----------ccccCCCCCCccchhc
Confidence 4456789999999999988777665545567888888875544432 222110 1112233333443322
Q ss_pred CCCCCccEEEEccccccC---C-hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 771 SRLHGFDIGTCLEVIEHM---E-EDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHL---p-dD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.....-|.+++..|++-+ . +.+.....+.+..++.|| .++|..+.
T Consensus 178 l~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 178 LSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred cCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 223344555544444433 3 233444667789999999 77776664
No 271
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=92.37 E-value=0.27 Score=51.37 Aligned_cols=67 Identities=27% Similarity=0.275 Sum_probs=47.1
Q ss_pred CCCChHhHHH---Hhcc-CceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHH
Q 002345 14 MKLTPKAIIV---QKFG-RNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKAL 89 (933)
Q Consensus 14 ~~~tpka~~~---q~~g-~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al 89 (933)
+..-||..++ |+.| ..-.|++.++. | |...| .|.|.+.+-+-.+.+|.-+.||+|||.||+.||
T Consensus 150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~--------g---~~~~~-~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al 217 (220)
T TIGR02191 150 TLKDYKTALQEWAQARGKPLPEYRLIKEE--------G---PDHDK-EFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAAL 217 (220)
T ss_pred ccCChHHHHHHHHHHcCCCCceEEEeccc--------C---CCCCc-eEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHH
Confidence 4556776654 3333 34677665332 1 12233 899999998767778999999999999999999
Q ss_pred HHc
Q 002345 90 EKL 92 (933)
Q Consensus 90 ~k~ 92 (933)
++|
T Consensus 218 ~~l 220 (220)
T TIGR02191 218 EKL 220 (220)
T ss_pred HhC
Confidence 986
No 272
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=92.36 E-value=0.89 Score=49.18 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=73.4
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--C
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--D 770 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL--p 770 (933)
.++.+||+||-|-|..-..+.+..+ .+=+-|+..++.+++.+... -....+|..+.|-.++. .
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~g-------------w~ek~nViil~g~WeDvl~~ 164 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWG-------------WREKENVIILEGRWEDVLNT 164 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhcc-------------cccccceEEEecchHhhhcc
Confidence 5788999999999998888877653 55677899999998886532 12345788888877653 2
Q ss_pred CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCE
Q 002345 771 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRI 808 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~ 808 (933)
.+++.||-|+---.-+|.. +..... +.+.++|||+.
T Consensus 165 L~d~~FDGI~yDTy~e~yE-dl~~~h-qh~~rLLkP~g 200 (271)
T KOG1709|consen 165 LPDKHFDGIYYDTYSELYE-DLRHFH-QHVVRLLKPEG 200 (271)
T ss_pred ccccCcceeEeechhhHHH-HHHHHH-HHHhhhcCCCc
Confidence 3577899998765557765 555555 46999999993
No 273
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=92.34 E-value=0.17 Score=42.18 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=48.3
Q ss_pred hhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcceec
Q 002345 394 PREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILEC 473 (933)
Q Consensus 394 pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~~ 473 (933)
|+..|-.+|..+....|.|... . ..|. .....|.|+|.|.. .+
T Consensus 2 p~~~L~e~~~~~~~~~~~y~~~--~--------------------------~~g~--~~~~~f~~~v~i~~-------~~ 44 (68)
T cd00048 2 PKSLLQELAQKRGKPLPEYELV--E--------------------------EEGP--DHAPRFTVEVTVGG-------KI 44 (68)
T ss_pred hHHHHHHHHHHcCCCCCeEEEe--e--------------------------eeCC--CCCCeEEEEEEECC-------EE
Confidence 7889999999998999999876 1 0111 11245999999944 22
Q ss_pred CchhhhhhhhhhHhhhhhHHHHHH
Q 002345 474 SPKEFYKKQNESIENASLKVLSWL 497 (933)
Q Consensus 474 ~~~~~~~~~~dai~~a~l~~l~~~ 497 (933)
.....-++..+|-|+||.++|..|
T Consensus 45 ~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 45 TGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred EEEeecCCHHHHHHHHHHHHHHhC
Confidence 333455678899999999999653
No 274
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=92.13 E-value=0.079 Score=48.03 Aligned_cols=73 Identities=23% Similarity=0.248 Sum_probs=57.3
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002345 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (933)
Q Consensus 108 ~~l~~~~~~~f~~~~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (933)
+.|+..|.|-|||+=|..++=|..|+. .| |-||+++||.+- |+-+++. | ..+|..|.+.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~m~------~d--G~Vpl~~i~~F~-rmk~lt~--d----------~~~i~~Al~~ 60 (75)
T cd08031 2 ELLKRQLEYYFSRENLANDAYLLSQMD------SD--QYVPIWTIANFN-KIKKLTT--D----------IDLIVEALRE 60 (75)
T ss_pred hHHHHHHHHHcCHhhhccCHHHHHHhC------CC--CCEEHHHHhCch-hHHHHcC--C----------HHHHHHHHHh
Confidence 578999999999999999988888763 23 899999999883 5555552 1 4788888887
Q ss_pred cCCcEEeecCceeee
Q 002345 188 LSEFVVTSEGQLSIW 202 (933)
Q Consensus 188 ~~~~~~~s~~~~~~~ 202 (933)
++ .|.+++++-.|+
T Consensus 61 S~-~lev~ed~~~VR 74 (75)
T cd08031 61 SP-NVQVDEKGEKVR 74 (75)
T ss_pred CC-eEEEcCCCCccC
Confidence 66 588998877664
No 275
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=91.91 E-value=0.099 Score=49.01 Aligned_cols=86 Identities=22% Similarity=0.235 Sum_probs=64.2
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeeccccccccccc--CcccccchHHHHHHHHHHh
Q 002345 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLI--NPKVESSHLLVLTYIMRAA 185 (933)
Q Consensus 108 ~~l~~~~~~~f~~~~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~--~~~~e~~p~~~~~~~~~a~ 185 (933)
+.++..|.|-|||+=|.-+.=|..|+. .|--|-||+++|+.+- |+-++++.- +| +..|-=-+..|..|.
T Consensus 3 ~~i~~QvEfYFSd~NL~~D~fL~~~~~------~~~dG~V~i~~i~~F~-rmk~l~~~~~~~~--~~~~~~~~~~I~~AL 73 (90)
T cd08030 3 EKVLRQVEFYFSDSNLPRDDFLLEEVE------EDPDGMVSLALICSFS-RMRSLLGLGGGKP--EDVPEDTLKAVAEAL 73 (90)
T ss_pred HHHHHHHHcccchhhcccCHHHHHHhc------cCCCCCEehHHHhcCh-HHHHHhhcccccc--cccchhHHHHHHHHH
Confidence 578999999999998888876766654 4556999999999984 666666432 22 222332367888888
Q ss_pred hccCCcEEeecCceeeee
Q 002345 186 TRLSEFVVTSEGQLSIWR 203 (933)
Q Consensus 186 ~~~~~~~~~s~~~~~~~~ 203 (933)
+.++ .|.+|+++.+|+|
T Consensus 74 k~S~-~levseD~~~VRR 90 (90)
T cd08030 74 RTST-LLKVSEDGKRVGR 90 (90)
T ss_pred ccCC-EEEEcCCCCccCC
Confidence 8866 5989999999987
No 276
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.60 E-value=0.32 Score=49.75 Aligned_cols=93 Identities=20% Similarity=0.263 Sum_probs=64.2
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002345 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~ 756 (933)
|...+.++-++..+...+..+.+|+|.|+|+.....++.| ....+|+++++-.+..++ +++...+ -.
T Consensus 55 pAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysr--l~a~R~g---------~~ 121 (199)
T KOG4058|consen 55 PATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSR--LHAWRAG---------CA 121 (199)
T ss_pred CccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHH--HHHHHHh---------cc
Confidence 3445556667788877777899999999999999888887 367899999999888874 3332221 23
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccc
Q 002345 757 KSAVLFDGSITVFDSRLHGFDIGTCLEV 784 (933)
Q Consensus 757 ~nVefi~GDaedLp~~~~sFDlVVc~eV 784 (933)
....|..-|+-..+..+ +..|+.+.+
T Consensus 122 k~trf~RkdlwK~dl~d--y~~vviFga 147 (199)
T KOG4058|consen 122 KSTRFRRKDLWKVDLRD--YRNVVIFGA 147 (199)
T ss_pred cchhhhhhhhhhccccc--cceEEEeeh
Confidence 35677777776655544 344444433
No 277
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=91.43 E-value=0.3 Score=51.81 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=65.0
Q ss_pred CCCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccccc
Q 002345 562 PEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCK 641 (933)
Q Consensus 562 ~~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~r 641 (933)
...++...-|+.+++ -.|+.|+.|.|||.++|. +|+-+++..+++.+++|.++ .|+.-++..+..|++|....+.
T Consensus 100 t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~-dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~- 174 (206)
T PRK11570 100 TESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLI-DGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELT- 174 (206)
T ss_pred CCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEEC-CCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEE-
Confidence 345677777777775 469999999999999996 59988888888899999996 4888898899999999988877
Q ss_pred cCCc
Q 002345 642 ELPP 645 (933)
Q Consensus 642 ~lP~ 645 (933)
+|+
T Consensus 175 -IP~ 177 (206)
T PRK11570 175 -IPH 177 (206)
T ss_pred -ECH
Confidence 444
No 278
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=91.38 E-value=0.32 Score=45.07 Aligned_cols=45 Identities=29% Similarity=0.319 Sum_probs=26.9
Q ss_pred eEEEeeecCCc----eeeeccccccchHHHHHHHHHH---HHcCCCCCCCCC
Q 002345 57 LYRCSLQLPEF----SVVSETFKKKKDAEQSAAEKAL---EKLGIDPSPNVP 101 (933)
Q Consensus 57 ~~~c~l~lp~~----~v~~~~~~~kkdaeq~aa~~al---~k~g~~~~~~~~ 101 (933)
.|.|.+.||.- ++.+...+.||+|.++||-.|- .++|.=.....|
T Consensus 32 ~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~ldd~L~P 83 (90)
T PF03368_consen 32 GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGELDDHLLP 83 (90)
T ss_dssp -EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S-TTTS--
T ss_pred cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCCCccccCC
Confidence 89999999972 4555789999999999998875 456653333344
No 279
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=91.37 E-value=0.27 Score=41.16 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=47.2
Q ss_pred hhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcceec
Q 002345 394 PREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILEC 473 (933)
Q Consensus 394 pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~~ 473 (933)
|...|-.+|..+++ .|.|... .. . |......|.|+|.|-.+ .
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~--~~--------------------------~--g~~~~~~f~~~v~i~~~-------~ 42 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELV--KE--------------------------E--GPDHAPRFTVTVKVGGE-------Y 42 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEE--ee--------------------------e--CCCCCCcEEEEEEECCE-------E
Confidence 77899999999999 8999876 10 0 11112359999998432 1
Q ss_pred CchhhhhhhhhhHhhhhhHHHHHH
Q 002345 474 SPKEFYKKQNESIENASLKVLSWL 497 (933)
Q Consensus 474 ~~~~~~~~~~dai~~a~l~~l~~~ 497 (933)
-....-++..+|-|+||.++|..|
T Consensus 43 ~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 43 TGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred EEEeccCCHHHHHHHHHHHHHHhc
Confidence 124455778899999999999876
No 280
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=91.08 E-value=0.43 Score=51.76 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=54.3
Q ss_pred CCCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002345 14 MKLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (933)
Q Consensus 14 ~~~tpka~~~q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~g 93 (933)
+++.....+++++...-.|++.... . |..-| .|-=++.+.+-.+-.|.=+-||.|||.||+.||++|+
T Consensus 163 ~Kt~LQe~~q~~~~~~p~Y~~v~~~-g----------~~h~~-~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~ 230 (235)
T COG0571 163 PKTRLQELLQAQGLVLPEYRLVKEE-G----------PAHDK-EFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLG 230 (235)
T ss_pred hhHHHHHHHHhcCCCCCeEEEeecc-C----------CCCCc-eEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhc
Confidence 3444556778888888999887443 1 22333 7777888888777779999999999999999999999
Q ss_pred CCC
Q 002345 94 IDP 96 (933)
Q Consensus 94 ~~~ 96 (933)
+..
T Consensus 231 ~~~ 233 (235)
T COG0571 231 VKE 233 (235)
T ss_pred ccc
Confidence 854
No 281
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=90.89 E-value=0.09 Score=50.91 Aligned_cols=105 Identities=22% Similarity=0.379 Sum_probs=46.1
Q ss_pred CccEEEEccccccCC----hhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCcCCCCCcchhhhccccccCCCc
Q 002345 775 GFDIGTCLEVIEHME----EDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDH 850 (933)
Q Consensus 775 sFDlVVc~eVLEHLp----dD~l~aL~eeI~rlLKPG~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~~~fRh~DH 850 (933)
.||+|+|..|.-++. ++-+..|.+.+++.|+||+++|-.|.. |..+-.+- .. ....+....
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~-w~sY~~~~-------~~-------~~~~~~n~~ 65 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP-WKSYKKAK-------RL-------SEEIRENYK 65 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE----HHHHHTTT-------TS--------HHHHHHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC-cHHHHHHh-------hh-------hHHHHhHHh
Confidence 489999999865442 344455666799999999777777763 34333221 00 011122223
Q ss_pred ccccCHHHHHHHHHHHHHHcCcEE-EEEeecCCCCCCCCccceeEEEec
Q 002345 851 KFEWTRDQFNCWATELAARHNYSV-EFSGVGGSGDREPGFASQIAVFRS 898 (933)
Q Consensus 851 kFeWTreEF~~Was~LA~r~GYsV-EF~GVG~~p~~~~Gf~TQIAVF~R 898 (933)
...+.+++|..++.+. .-||.. +. ++.......||.--|-+|+|
T Consensus 66 ~i~lrP~~F~~~L~~~--evGF~~~e~--~~~~~~~~~gF~RpI~lf~K 110 (110)
T PF06859_consen 66 SIKLRPDQFEDYLLEP--EVGFSSVEE--LGVPENSSKGFDRPIYLFRK 110 (110)
T ss_dssp H----GGGHHHHHTST--TT---EEEE--E-------------EEEEE-
T ss_pred ceEEChHHHHHHHHhc--ccceEEEEE--cccCCCCCCCCCCcEEEEeC
Confidence 3457888888764321 236543 43 33333335789888888875
No 282
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=90.83 E-value=0.36 Score=51.42 Aligned_cols=112 Identities=17% Similarity=0.123 Sum_probs=54.4
Q ss_pred cCCCCEEEEEcCCcChHHHHHhc---CCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLD---YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 768 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr---~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaed 768 (933)
..++++|+|+|--.|.-+..+|. ..+...+|+||||+-..........+ ...++|++++||..+
T Consensus 30 ~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~h-------------p~~~rI~~i~Gds~d 96 (206)
T PF04989_consen 30 ELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESH-------------PMSPRITFIQGDSID 96 (206)
T ss_dssp HH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----------------TTEEEEES-SSS
T ss_pred HhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhc-------------cccCceEEEECCCCC
Confidence 34788999999998876654432 11123799999997654433311111 123689999999876
Q ss_pred cCC------CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 769 FDS------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 769 Lp~------~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
... .....+-++.+.=-+|..+.....|.. .+.+++|| .+||...+.+
T Consensus 97 ~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~-y~plv~~G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 97 PEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEA-YAPLVSPGSYLIVEDTIIE 151 (206)
T ss_dssp THHHHTSGSS----SSEEEEESS----SSHHHHHHH-HHHT--TT-EEEETSHHHH
T ss_pred HHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHH-hCccCCCCCEEEEEecccc
Confidence 432 111233333333334555566666654 88999999 7777655533
No 283
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=90.77 E-value=0.78 Score=51.57 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=65.8
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
++.+++.|...++...+|.--|.|..+..+.+..+...+++|+|-++.+++.|++++.. ...++.++
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~-------------~~~r~~~v 78 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE-------------FDGRVTLV 78 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc-------------cCCcEEEE
Confidence 34566777777889999999999999999988775567899999999999999988752 23578888
Q ss_pred EcCccccCCC-----CCCccEEEE
Q 002345 763 DGSITVFDSR-----LHGFDIGTC 781 (933)
Q Consensus 763 ~GDaedLp~~-----~~sFDlVVc 781 (933)
++++.++... ...+|-|+.
T Consensus 79 ~~~F~~l~~~l~~~~i~~vDGiL~ 102 (314)
T COG0275 79 HGNFANLAEALKELGIGKVDGILL 102 (314)
T ss_pred eCcHHHHHHHHHhcCCCceeEEEE
Confidence 8887665431 235555554
No 284
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=90.74 E-value=0.48 Score=43.22 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=56.1
Q ss_pred ChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCC--cc
Q 002345 393 FPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRD--PI 470 (933)
Q Consensus 393 ~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~--~~ 470 (933)
.|+.+|..+|...++..|+|...+. .|-.....|.|+|.|-.-... -+
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~~------------------------------~Gp~~~~~F~ykV~i~~~~~~~~~~ 51 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVSE------------------------------SGPDHRKLFLYKVVIPGLEYPFEGS 51 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEec------------------------------cCCCccEEEEEEEEEcCCCCCCcce
Confidence 5899999999999999999988711 122233459999999877763 44
Q ss_pred eecCc-hhhhhhhhhhHhhhhhHHHHHH
Q 002345 471 LECSP-KEFYKKQNESIENASLKVLSWL 497 (933)
Q Consensus 471 ~~~~~-~~~~~~~~dai~~a~l~~l~~~ 497 (933)
++|-+ .+-=.+-.||=.+||..+|.+|
T Consensus 52 ~~~~~p~~~~~~~k~Ak~~AA~~~L~~L 79 (80)
T PF14709_consen 52 IECFGPTKPSSTKKEAKESAAQQALQAL 79 (80)
T ss_pred EEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence 55544 4555667789999999999876
No 285
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=90.48 E-value=0.75 Score=51.85 Aligned_cols=85 Identities=16% Similarity=0.273 Sum_probs=57.7
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
++.+++.+...++..++|.--|.|..+..+++..++ .+|+|+|.++.+++.|++++.. ...++.++
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~-------------~~~r~~~~ 74 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKK-------------FDDRFIFI 74 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCC-------------CCTTEEEE
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhh-------------ccceEEEE
Confidence 345667777778889999999999999999877533 8999999999999999876541 24578888
Q ss_pred EcCccccCC------CCCCccEEEE
Q 002345 763 DGSITVFDS------RLHGFDIGTC 781 (933)
Q Consensus 763 ~GDaedLp~------~~~sFDlVVc 781 (933)
++++.++.. ....+|.|+.
T Consensus 75 ~~~F~~l~~~l~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 75 HGNFSNLDEYLKELNGINKVDGILF 99 (310)
T ss_dssp ES-GGGHHHHHHHTTTTS-EEEEEE
T ss_pred eccHHHHHHHHHHccCCCccCEEEE
Confidence 888876532 2245666665
No 286
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.44 E-value=0.3 Score=51.14 Aligned_cols=59 Identities=25% Similarity=0.334 Sum_probs=54.3
Q ss_pred CCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 581 SNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 581 ~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
+.|-++-+||+++|.+ |+.++++..+|.+|+|.+|++-|+.-++.-+.-|=+|.-..-.
T Consensus 86 k~GD~l~~HY~g~leD-Gt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~ 144 (188)
T KOG0549|consen 86 KKGDTLHVHYTGSLED-GTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLI 144 (188)
T ss_pred cCCCEEEEEEEEEecC-CCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEe
Confidence 6799999999998887 9999999999999999999999999998889889999877655
No 287
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=89.24 E-value=0.21 Score=45.79 Aligned_cols=79 Identities=28% Similarity=0.336 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHH
Q 002345 105 EAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRA 184 (933)
Q Consensus 105 e~~~~l~~~~~~~f~~~~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a 184 (933)
|.-+.|+.+|.|-|||+=|.-+.=|..|+... =|.||+++|+.+. |+.++++ | ..+|.+|
T Consensus 2 ~~~~~i~~QvEfYFSd~NL~~D~fLr~~~~~~-------~g~Vpl~~i~~F~-r~k~l~~--------d----~~~i~~A 61 (80)
T smart00715 2 ELKQKIKKQVEYYFSDENLPRDKFLRKKMDKN-------DGYVPISTIASFK-RVKSLTT--------D----VNLIVEA 61 (80)
T ss_pred hHHHHHHHHHHHHcCHhhhhhCHHHHHHhccC-------CCCEEhHHHhCch-hHHHHcC--------C----HHHHHHH
Confidence 45578999999999999998888776666542 3899999999985 6666664 1 4789999
Q ss_pred hhccCCcEEeecCceeeeec
Q 002345 185 ATRLSEFVVTSEGQLSIWRK 204 (933)
Q Consensus 185 ~~~~~~~~~~s~~~~~~~~~ 204 (933)
.+.++- |.+++++.=|+|.
T Consensus 62 l~~S~~-lel~~d~~~VRR~ 80 (80)
T smart00715 62 LRSSPK-LEVSEDGLKVRRR 80 (80)
T ss_pred HHhCCe-EEEcCCCCeeCcC
Confidence 988764 8899998888773
No 288
>PRK12372 ribonuclease III; Reviewed
Probab=89.18 E-value=0.8 Score=53.26 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=47.8
Q ss_pred ChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCcee-eeccccccchHHHHHHHHHHHH
Q 002345 17 TPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSV-VSETFKKKKDAEQSAAEKALEK 91 (933)
Q Consensus 17 tpka~~~---q~~g~~-~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v-~~~~~~~kkdaeq~aa~~al~k 91 (933)
-||-.+. |+.|.. -.|++.+... |... -.|.|.+.+.+..+ .+|.=+-||.|||.||+.||++
T Consensus 152 D~KS~LQE~~Q~~~~~~P~Y~lv~e~G-----------p~h~-~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~k 219 (413)
T PRK12372 152 DAKTLLQEYLQGHKIALPTYTVVATHG-----------AAHN-QQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDE 219 (413)
T ss_pred CHHHHHHHHHHhcCCCCCeeEEeeeec-----------CCCC-ceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 5777654 444433 4687764332 2223 38999999998644 4688899999999999999999
Q ss_pred cCC
Q 002345 92 LGI 94 (933)
Q Consensus 92 ~g~ 94 (933)
|+-
T Consensus 220 L~~ 222 (413)
T PRK12372 220 VMA 222 (413)
T ss_pred Hhc
Confidence 994
No 289
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=89.18 E-value=0.65 Score=49.80 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=50.7
Q ss_pred CCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 767 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDae 767 (933)
.-.+.|||||-|.++..|+... |..-+.|++|-...-+..++++.+....- ..+...++.+...+..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~-----a~~~~~ni~vlr~nam 127 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTS-----AEGQYPNISVLRTNAM 127 (249)
T ss_pred cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccc-----cccccccceeeeccch
Confidence 3468999999999999999887 56789999999999999998887654211 0223556666666554
No 290
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=89.03 E-value=1.2 Score=47.89 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=53.0
Q ss_pred CCEEEEEcCCcChHHHHHhcCCCC-------CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYPTA-------LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 767 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g~~-------f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDae 767 (933)
.-+|+|+|+|+|.++..+++.-.. ..+++-||+|+.+.+..++++...... ......++.++ .++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~------~~~~~~~i~w~-~~l~ 91 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPK------DTEFGDPIRWL-DDLE 91 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---------STTTCGCEEEE-SSGG
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhccc------ccccCCccchh-hhhh
Confidence 469999999999998766542211 148999999999988888776532100 01123357773 3554
Q ss_pred ccCCCCCCccEEEEccccccCC
Q 002345 768 VFDSRLHGFDIGTCLEVIEHME 789 (933)
Q Consensus 768 dLp~~~~sFDlVVc~eVLEHLp 789 (933)
+.+ ..-+|++++++.-+|
T Consensus 92 ~~p----~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 92 EVP----FPGFIIANELFDALP 109 (252)
T ss_dssp CS-----CCEEEEEESSGGGS-
T ss_pred ccc----CCEEEEEeeehhcCc
Confidence 443 567889999999988
No 291
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=88.90 E-value=0.29 Score=47.56 Aligned_cols=32 Identities=31% Similarity=0.391 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDIS 728 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS 728 (933)
+....+|||||+|.+...|...| ..-.|+|+-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EG---y~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEG---YPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCC---CCccccccc
Confidence 45679999999999999999998 678999953
No 292
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=88.60 E-value=0.79 Score=53.65 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=62.3
Q ss_pred CEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-CC
Q 002345 696 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-LH 774 (933)
Q Consensus 696 ~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~-~~ 774 (933)
.-|||||.|+|.+..+.++.|+ ..|++++.-..|.+.|++..++ .+-..+|+++.---++...- ..
T Consensus 68 v~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~k-----------ng~SdkI~vInkrStev~vg~~~ 134 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHK-----------NGMSDKINVINKRSTEVKVGGSS 134 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhc-----------CCCccceeeeccccceeeecCcc
Confidence 3689999999999999989885 7799999999999999987763 23345666665443333211 12
Q ss_pred CccEEEEcccc-ccCChhHHHHHHHHHHHccCCC
Q 002345 775 GFDIGTCLEVI-EHMEEDEASQFGNIVLSSFRPR 807 (933)
Q Consensus 775 sFDlVVc~eVL-EHLpdD~l~aL~eeI~rlLKPG 807 (933)
..|+++.-.+. |-+.+-.+..|......+++|+
T Consensus 135 RadI~v~e~fdtEligeGalps~qhAh~~L~~~n 168 (636)
T KOG1501|consen 135 RADIAVREDFDTELIGEGALPSLQHAHDMLLVDN 168 (636)
T ss_pred hhhhhhHhhhhhhhhccccchhHHHHHHHhcccC
Confidence 24554432222 1222223345555455666776
No 293
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=87.70 E-value=0.57 Score=49.60 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=52.1
Q ss_pred CCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccccccCCch
Q 002345 581 SNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQ 646 (933)
Q Consensus 581 ~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~r~lP~~ 646 (933)
.+|++|.|+|++++.+ |+-.++..+ ..+++|-+|++.|++-|+..|.-|.+|....+. +||.
T Consensus 4 ~~~~vV~l~Y~l~~~d-G~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~--l~pe 65 (196)
T PRK10737 4 AKDLVVSLAYQVRTED-GVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVA--VGAN 65 (196)
T ss_pred CCCCEEEEEEEEEeCC-CCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEE--EChH
Confidence 6899999999999964 765444433 579999999999999999999999999999887 5543
No 294
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=87.64 E-value=2.1 Score=48.16 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=79.3
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 770 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp-- 770 (933)
..+++||-||-|.|.+++..+++. .+..+.-+|++...++..++.+.+.+.+ -..+++.+.-||...+-
T Consensus 120 ~npkkvlVVgggDggvlrevikH~-~ve~i~~~eiD~~Vie~sk~y~p~la~g--------y~~~~v~l~iGDG~~fl~~ 190 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHK-SVENILLCEIDENVIESSKQYLPTLACG--------YEGKKVKLLIGDGFLFLED 190 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccc-cccceeeehhhHHHHHHHHHHhHHHhcc--------cCCCceEEEeccHHHHHHH
Confidence 367899999999999999999884 7889999999999999998887765443 24568999999876542
Q ss_pred CCCCCccEEEEccccccCChhH---HHHHHHHHHHccCCCEEEEEe
Q 002345 771 SRLHGFDIGTCLEVIEHMEEDE---ASQFGNIVLSSFRPRILIVST 813 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLpdD~---l~aL~eeI~rlLKPG~LIITT 813 (933)
...+.||+|+.-.. .-+.+.. ...+.+.+.+.|||+.++++.
T Consensus 191 ~~~~~~dVii~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 191 LKENPFDVIITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred hccCCceEEEEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 23678999986322 1121111 123334578899999555443
No 295
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=87.64 E-value=0.67 Score=50.05 Aligned_cols=134 Identities=19% Similarity=0.138 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhc-CCCCCceEEEEeCChHHHHHHHHHHhhh--------h-----
Q 002345 678 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLD-YPTALEKIVGVDISQKSLSRAAKIIHSK--------L----- 743 (933)
Q Consensus 678 Ly~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr-~g~~f~~VtGVDIS~emLe~ArkrL~a~--------l----- 743 (933)
+..+.++..+..+....+-++-|-.||.|.++..+.- ++..+..|+|-||++++|+.|++++.-. .
T Consensus 35 LAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~ 114 (246)
T PF11599_consen 35 LASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRE 114 (246)
T ss_dssp HHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHH
Confidence 3344444444455455667999999999998865542 2224678999999999999999876410 0
Q ss_pred -----------------hcccccCCCCCCCccEEEEEcCccccCC-----CCCCccEEEEcccc----cc---CChhHHH
Q 002345 744 -----------------SKKLDAAVPCTDVKSAVLFDGSITVFDS-----RLHGFDIGTCLEVI----EH---MEEDEAS 794 (933)
Q Consensus 744 -----------------s~~~~~~~Pr~~~~nVefi~GDaedLp~-----~~~sFDlVVc~eVL----EH---LpdD~l~ 794 (933)
+.+...+.-.++.......+.|+.+... .....|+|+.---. +| .+.++..
T Consensus 115 ~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~ 194 (246)
T PF11599_consen 115 LYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVA 194 (246)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHH
Confidence 0000000012244557888888877321 23346888873222 22 2346666
Q ss_pred HHHHHHHHccCCC-EEEE
Q 002345 795 QFGNIVLSSFRPR-ILIV 811 (933)
Q Consensus 795 aL~eeI~rlLKPG-~LII 811 (933)
.++..++.+|-++ ++.|
T Consensus 195 ~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 195 QMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHHCCS-TT-EEEE
T ss_pred HHHHHHHhhCCCCcEEEE
Confidence 7777789999333 4444
No 296
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=87.54 E-value=1.1 Score=49.01 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=50.7
Q ss_pred EEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC--CC
Q 002345 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--LH 774 (933)
Q Consensus 697 rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~--~~ 774 (933)
+|+|+-||.|.+...|.+.| +..+.++|+++.+++..+.+.. . .++.+|+.++... ..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~-----------------~-~~~~~Di~~~~~~~~~~ 61 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFP-----------------N-KLIEGDITKIDEKDFIP 61 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCC-----------------C-CCccCccccCchhhcCC
Confidence 68999999999999888876 4778999999999988866532 1 1566777776543 35
Q ss_pred CccEEEEc
Q 002345 775 GFDIGTCL 782 (933)
Q Consensus 775 sFDlVVc~ 782 (933)
.+|+++..
T Consensus 62 ~~D~l~~g 69 (275)
T cd00315 62 DIDLLTGG 69 (275)
T ss_pred CCCEEEeC
Confidence 78999874
No 297
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=87.15 E-value=0.27 Score=44.46 Aligned_cols=74 Identities=30% Similarity=0.372 Sum_probs=57.9
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002345 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (933)
Q Consensus 108 ~~l~~~~~~~f~~~~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (933)
+.|+.+|.|-|||+=|..++=|..|+ +. =|.||+++|+.+- |+-++|+-. ..|.+|.+.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~------~~--~g~Vpl~~i~~F~-r~k~l~~~~------------~~i~~Al~~ 60 (75)
T cd07323 2 EKIKKQVEYYFSDENLCKDRFLRSLM------DD--DGWVPLSLLASFN-RVKKLTTDV------------ELILEALRD 60 (75)
T ss_pred hHHHhhhHhccCHhhhCcCHHHHHhc------CC--CCCEEHHHHhCch-HHHHHcCCH------------HHHHHHHHh
Confidence 46899999999999999997666666 33 3999999999884 566666422 688999988
Q ss_pred cCCcEEeecCceeeee
Q 002345 188 LSEFVVTSEGQLSIWR 203 (933)
Q Consensus 188 ~~~~~~~s~~~~~~~~ 203 (933)
++ .|-+++++-.|+|
T Consensus 61 s~-~lel~~~~~~Vrr 75 (75)
T cd07323 61 SS-VVEVSEDGTKVRR 75 (75)
T ss_pred CC-eEEEeCCCCccCC
Confidence 66 4888888777765
No 298
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.71 E-value=0.94 Score=47.17 Aligned_cols=120 Identities=16% Similarity=0.180 Sum_probs=74.3
Q ss_pred HHHHhhcCCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 686 ALQHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
++.......+.+|||+|.|- |.-..++|... +...|.-.|=+++.++-.++....... ....++....-
T Consensus 21 ~l~~~n~~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~---------s~~tsc~vlrw 90 (201)
T KOG3201|consen 21 ILRDPNKIRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMA---------SSLTSCCVLRW 90 (201)
T ss_pred HHhchhHHhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccc---------cccceehhhHH
Confidence 33443444678899999994 44445555544 457899999999998888765432110 11222222221
Q ss_pred Ccccc--CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 765 SITVF--DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 765 DaedL--p~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
+.... ......||.|+|...+- +. +-...+.+.+.++|+|. ..++..|.+.
T Consensus 91 ~~~~aqsq~eq~tFDiIlaADClF-fd-E~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201)
T KOG3201|consen 91 LIWGAQSQQEQHTFDIILAADCLF-FD-EHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201)
T ss_pred HHhhhHHHHhhCcccEEEeccchh-HH-HHHHHHHHHHHHHhCcccceeEecCccc
Confidence 21111 11235899999998763 33 44467778899999998 8888888653
No 299
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=85.85 E-value=6.2 Score=42.60 Aligned_cols=105 Identities=9% Similarity=0.097 Sum_probs=75.6
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
..++.+||=+|..+|.....++...+ ...+.||+.|+.+.+..-..+. .-+|+--+.+|+.....
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~--------------~R~Ni~PIL~DA~~P~~ 138 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAE--------------KRPNIIPILEDARKPEK 138 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHH--------------hCCCceeeecccCCcHH
Confidence 45789999999999999988888653 4689999999977655443332 12467777888865432
Q ss_pred ---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 772 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 772 ---~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
--...|+|+.-- -.+++.+.+..++...|++| .+++..-.
T Consensus 139 Y~~~Ve~VDviy~DV----AQp~Qa~I~~~Na~~FLk~~G~~~i~iKA 182 (231)
T COG1889 139 YRHLVEKVDVIYQDV----AQPNQAEILADNAEFFLKKGGYVVIAIKA 182 (231)
T ss_pred hhhhcccccEEEEec----CCchHHHHHHHHHHHhcccCCeEEEEEEe
Confidence 124688887642 23688888999999999998 66665543
No 300
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=85.63 E-value=1.1 Score=49.54 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=63.5
Q ss_pred cCCCCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccc
Q 002345 560 AIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACF 639 (933)
Q Consensus 560 ~~~~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff 639 (933)
.....++...-|+.+++ .-|..|..|.|+|.++|.+ |+-+++.-+.+.+++|.++ .|++.++..+..|.+|....+
T Consensus 142 ~~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~d-G~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l 217 (269)
T PRK10902 142 KTTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLID-GKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKL 217 (269)
T ss_pred EECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCC-CCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEE
Confidence 34455777777777775 5799999999999999864 9888887777889999886 499999999999999988765
Q ss_pred c
Q 002345 640 C 640 (933)
Q Consensus 640 ~ 640 (933)
.
T Consensus 218 ~ 218 (269)
T PRK10902 218 V 218 (269)
T ss_pred E
Confidence 5
No 301
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.40 E-value=5.7 Score=47.80 Aligned_cols=111 Identities=11% Similarity=0.103 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccc--ccCCCCCCCccEEEEEcCccc--
Q 002345 694 CATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKL--DAAVPCTDVKSAVLFDGSITV-- 768 (933)
Q Consensus 694 ~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~--~~~~Pr~~~~nVefi~GDaed-- 768 (933)
++.+|+=+|+|. |.....+++..+ ..|+++|.+++.++.++. +....-... +.++...+. ......+..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gY--a~~~s~~~~~~~ 237 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGY--AKVMSEEFIAAE 237 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccc--eeecCHHHHHHH
Confidence 458999999995 455555554432 579999999998888764 221000000 000000000 0000000000
Q ss_pred ---cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002345 769 ---FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 769 ---Lp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LII 811 (933)
++.....+|+|+..-.+.--+ .+ ..+.+++.+.+|||.+|+
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~-aP-~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKP-AP-KLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCC-CC-eeehHHHHhhCCCCCEEE
Confidence 122245799998876655543 22 234456899999994444
No 302
>PHA00738 putative HTH transcription regulator
Probab=84.94 E-value=0.2 Score=48.39 Aligned_cols=32 Identities=6% Similarity=0.090 Sum_probs=29.2
Q ss_pred eEeecccccchhhHHh-----hhhccccCCccccccC
Q 002345 612 EFEMGTGAVIPQVEVV-----TAQMSVGQSACFCKEL 643 (933)
Q Consensus 612 ef~~g~~~~shhLkvl-----Vtq~reGqsiff~r~l 643 (933)
.|+|.|++||+||++| |..+++|+-.+|+...
T Consensus 35 ~l~lSQptVS~HLKvLreAGLV~srK~Gr~vyY~Ln~ 71 (108)
T PHA00738 35 TLLLSYTTVLRHLKILNEQGYIELYKEGRTLYAKIRE 71 (108)
T ss_pred hhCCCHHHHHHHHHHHHHCCceEEEEECCEEEEEECC
Confidence 5689999999999999 9999999999999654
No 303
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=84.74 E-value=2.8 Score=45.70 Aligned_cols=95 Identities=12% Similarity=0.070 Sum_probs=50.6
Q ss_pred HHHHhhcCCC--CEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCC-CCCCccEEEE
Q 002345 686 ALQHIKESCA--TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP-CTDVKSAVLF 762 (933)
Q Consensus 686 Ild~L~~~~g--~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~P-r~~~~nVefi 762 (933)
+++.+...++ .+|||.-+|-|.-+..|+..| .+|+|++-|+-+-...+.-+....... .. .....+++++
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G---~~V~~lErspvia~Ll~dGL~r~~~~~----~~~~~~~~ri~l~ 137 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASLG---CKVTGLERSPVIAALLKDGLKRAQQDP----ELLAEAMRRIQLI 137 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHST----TTHHHHHHHEEEE
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHccC---CeEEEEECCHHHHHHHHHHHHHHHhCc----HhHHHHHhCCEEE
Confidence 4455544444 489999999999888888777 689999999965444433322111100 00 0112489999
Q ss_pred EcCccc-cCCCCCCccEEEEcccccc
Q 002345 763 DGSITV-FDSRLHGFDIGTCLEVIEH 787 (933)
Q Consensus 763 ~GDaed-Lp~~~~sFDlVVc~eVLEH 787 (933)
++|..+ +.....+||+|++-=.+.|
T Consensus 138 ~~d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 138 HGDALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp ES-CCCHCCCHSS--SEEEE--S---
T ss_pred cCCHHHHHhhcCCCCCEEEECCCCCC
Confidence 999877 3445679999999655555
No 304
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=84.34 E-value=1.7 Score=46.48 Aligned_cols=119 Identities=9% Similarity=0.094 Sum_probs=68.2
Q ss_pred HHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHH--HHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 687 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAA--KIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 687 ld~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~Ar--krL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
+......++.+|+|+=.|.|.+++.++..-++-..|+++-..+...-..+ .++.... .+....|++.+-.
T Consensus 41 L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~--------~e~~~aN~e~~~~ 112 (238)
T COG4798 41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAA--------REPVYANVEVIGK 112 (238)
T ss_pred eEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhh--------hhhhhhhhhhhCC
Confidence 34445668899999999999999999987655567888765543111110 0111000 0112335555555
Q ss_pred CccccCCCCCCccEEEEcccccc-----CChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 765 SITVFDSRLHGFDIGTCLEVIEH-----MEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eVLEH-----LpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+...+. ..+..|++.....-|- +.+..+..+...+++.|||| .++|...
T Consensus 113 ~~~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 113 PLVALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 555554 3445566554322211 12355566666799999999 5555443
No 305
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=84.23 E-value=66 Score=35.40 Aligned_cols=169 Identities=9% Similarity=0.006 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhhc---CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002345 679 SKQRVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 755 (933)
Q Consensus 679 y~qRve~Ild~L~~---~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~ 755 (933)
...|..++-+.+.. .....|+.+|||-=.-...|.... ...++=||. +++++.-++.+.... ...
T Consensus 63 ~~~Rtr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~--~~~~~EvD~-P~v~~~K~~~l~~~~---------~~~ 130 (260)
T TIGR00027 63 IAVRTRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWPD--GTRVFEVDQ-PAVLAFKEKVLAELG---------AEP 130 (260)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCCC--CCeEEECCC-hHHHHHHHHHHHHcC---------CCC
Confidence 34455555444432 235689999999766665563221 135555553 345555555554210 012
Q ss_pred CccEEEEEcCccc-cC-------CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhH----HH
Q 002345 756 VKSAVLFDGSITV-FD-------SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNA----IL 822 (933)
Q Consensus 756 ~~nVefi~GDaed-Lp-------~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs----~f 822 (933)
..+..++..|+.+ +. +.....-++++-.|+.+++++....+.+.+.+...|| .+++...+..-.. ..
T Consensus 131 ~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~ 210 (260)
T TIGR00027 131 PAHRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMR 210 (260)
T ss_pred CCceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHH
Confidence 3467888888752 10 1122344788888999999888888888888888899 7777654431010 01
Q ss_pred HhhccCcCCCCCcchhhhccccccCCCcccccCHHHHHHHHHHHHHHcCcEEEE
Q 002345 823 QKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEF 876 (933)
Q Consensus 823 ~~l~~~g~~eYpdEp~g~~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsVEF 876 (933)
.... . ...........+.+++++...| ...+|+.+.-
T Consensus 211 ~~~~-----~--------~~~~~~~~~~~~~~~~~~~~~~----l~~~Gw~~~~ 247 (260)
T TIGR00027 211 APVY-----H--------AARGVDGSGLVFGIDRADVAEW----LAERGWRASE 247 (260)
T ss_pred HHHH-----H--------hhhcccccccccCCChhhHHHH----HHHCCCeeec
Confidence 1110 0 0011223344566789999966 4567887743
No 306
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=83.82 E-value=0.61 Score=42.46 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=56.6
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002345 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (933)
Q Consensus 108 ~~l~~~~~~~f~~~~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (933)
+.|+..|.|-|||+=|..+.=|..| +..+.| |.||+++|+.+. |+-+++. ...|.+|.+.
T Consensus 2 ~~I~~QvEfYFSd~NL~~D~fLr~~----~~~~~~--G~Vpl~~i~~F~-rmk~l~~-------------~~~i~~Al~~ 61 (76)
T cd08029 2 EEIRKQVEFYFSDSNLPTDKFLWTL----TGGSNN--GWVPIKTIASFK-RMRRFQP-------------LEAVVEALRE 61 (76)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHH----hccCCC--CcEehHHHhCch-HHHHcCC-------------HHHHHHHHHh
Confidence 5789999999999988888655444 444444 889999999985 5555541 1788888888
Q ss_pred cCCcEEeecCceeeee
Q 002345 188 LSEFVVTSEGQLSIWR 203 (933)
Q Consensus 188 ~~~~~~~s~~~~~~~~ 203 (933)
++ .|.+++++--|+|
T Consensus 62 S~-~lev~~d~~~VRR 76 (76)
T cd08029 62 SE-LLEVSEDGENVRR 76 (76)
T ss_pred CC-eEEEeCCCCcccC
Confidence 76 4889998877765
No 307
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=83.81 E-value=0.47 Score=42.94 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=54.1
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002345 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (933)
Q Consensus 108 ~~l~~~~~~~f~~~~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (933)
+.|+..|.|-|||+=|..+.=|..|+ +. =|-||+++||.+. |+-++.. | ..+|.+|.+.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fLr~~m------~~--~G~Vpl~~i~~F~-rmk~l~~--------d----~~~i~~Al~~ 60 (73)
T cd08034 2 EYIKKQIEYYFSVDNLEKDFFLRRKM------DP--EGYLPIALIASFH-RVQALTT--------D----VNLILEALKD 60 (73)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHc------CC--CCCEeHHHHhccH-HHHHHcC--------C----HHHHHHHHHc
Confidence 57899999999999998888777776 22 4889999999986 5555432 2 4577888777
Q ss_pred cCCcEEeecCceeeee
Q 002345 188 LSEFVVTSEGQLSIWR 203 (933)
Q Consensus 188 ~~~~~~~s~~~~~~~~ 203 (933)
++- |.+++. +|||
T Consensus 61 S~~-lev~e~--kvR~ 73 (73)
T cd08034 61 STV-VELVDE--KVRC 73 (73)
T ss_pred CCe-EEEecC--eecC
Confidence 654 888884 6654
No 308
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=83.63 E-value=6.2 Score=39.95 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=52.2
Q ss_pred eEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC--CCCccEEEEccccccCCh--------
Q 002345 721 KIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--LHGFDIGTCLEVIEHMEE-------- 790 (933)
Q Consensus 721 ~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~--~~sFDlVVc~eVLEHLpd-------- 790 (933)
+|+|+||-+++++.+++++.+. ....++++++.+=++++.. .+.+|+|+.+ |-++|.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~-----------~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~ 67 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA-----------GLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTK 67 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT-----------T-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--
T ss_pred CEEEEECHHHHHHHHHHHHHhc-----------CCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcC
Confidence 5899999999999999998742 2234799999887776542 2479998875 345552
Q ss_pred --hHHHHHHHHHHHccCCCEEEEEe
Q 002345 791 --DEASQFGNIVLSSFRPRILIVST 813 (933)
Q Consensus 791 --D~l~aL~eeI~rlLKPG~LIITT 813 (933)
.-+.++. .+.++|+||++++-+
T Consensus 68 ~~TTl~Al~-~al~lL~~gG~i~iv 91 (140)
T PF06962_consen 68 PETTLKALE-AALELLKPGGIITIV 91 (140)
T ss_dssp HHHHHHHHH-HHHHHEEEEEEEEEE
T ss_pred cHHHHHHHH-HHHHhhccCCEEEEE
Confidence 3345665 489999999444433
No 309
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=83.61 E-value=1.6 Score=47.20 Aligned_cols=79 Identities=20% Similarity=0.247 Sum_probs=68.4
Q ss_pred cCCCCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhccccee-EeecccccchhhHHhhhhccccCCcc
Q 002345 560 AIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFE-FEMGTGAVIPQVEVVTAQMSVGQSAC 638 (933)
Q Consensus 560 ~~~~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fe-f~~g~~~~shhLkvlVtq~reGqsif 638 (933)
..+.+++.+..|.=++ |=-|..|.+|.|+|+..|--.|+-++..+. .+.|. |..|.+.|+.-+++.|.-|++|--..
T Consensus 116 ~tl~~Gl~y~D~~vG~-G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGS-GPSAKKGKRVSVRYIGKLKGNGKVFDSNFG-GKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEecC-CCCCCCCCEEEEEEEEEecCCCeEeecccC-CCCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence 5688999999999888 899999999999999999966888877665 45666 99999999999999999999997655
Q ss_pred cc
Q 002345 639 FC 640 (933)
Q Consensus 639 f~ 640 (933)
-.
T Consensus 194 vi 195 (226)
T KOG0552|consen 194 VI 195 (226)
T ss_pred EE
Confidence 43
No 310
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=82.87 E-value=7.1 Score=43.00 Aligned_cols=115 Identities=14% Similarity=0.043 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEEEEEcCccccCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDGSITVFDSR 772 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~-~nVefi~GDaedLp~~ 772 (933)
...+||++|.|+|..+...+...+ .+|+--|+...+.... ........ .+.+.+.. .-..+.-++..+..+.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~~~~~L~-~~~~~~~~----~l~~~g~~v~v~~L~Wg~~~~~~~~ 158 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG--AEVVLTDLPKVVENLK-FNRDKNNI----ALNQLGGSVIVAILVWGNALDVSFR 158 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc--ceeccCCchhhHHHHH-Hhhhhhhh----hhhhcCCceeEEEEecCCcccHhhc
Confidence 456899999999977776666443 6788888665433222 22111110 11111111 1122333333333344
Q ss_pred CCC-ccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 773 LHG-FDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 773 ~~s-FDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
... ||+|++..++.+-. ....+ ...++.+|..+ .+++.++-.+
T Consensus 159 ~~~~~DlilasDvvy~~~-~~e~L-v~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 159 LPNPFDLILASDVVYEEE-SFEGL-VKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cCCcccEEEEeeeeecCC-cchhH-HHHHHHHHhcCCeEEEEEeccc
Confidence 445 99999999986665 22122 23355566666 7777776543
No 311
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=82.82 E-value=0.53 Score=42.99 Aligned_cols=76 Identities=32% Similarity=0.432 Sum_probs=57.0
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002345 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (933)
Q Consensus 108 ~~l~~~~~~~f~~~~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (933)
++|+..|.|-|||+=|..+.=|..|+ ..+.| |.||+++||.+- |+-++++ | ..+|..|.+.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~----~~~~d--G~Vpl~~i~~F~-rmk~l~~--------d----~~~I~~Al~~ 62 (77)
T cd08033 2 QKIVKQVEYYFSDENLLKDAFLLKHV----RRNKE--GYVPIKLIASFK-KVKALTR--------D----WRVVAAALRR 62 (77)
T ss_pred hHHHhHHHhhcCHhhhccCHHHHHHh----ccCCC--CcEehHHHhcch-HHHHHcC--------C----HHHHHHHHHh
Confidence 57899999999999888876555544 33444 899999999984 6666654 1 2688889888
Q ss_pred cCCcEEeecCceeeee
Q 002345 188 LSEFVVTSEGQLSIWR 203 (933)
Q Consensus 188 ~~~~~~~s~~~~~~~~ 203 (933)
+.- |.+++++-=|+|
T Consensus 63 S~~-lev~~d~~~VRR 77 (77)
T cd08033 63 SSK-LVVSEDGKKVRR 77 (77)
T ss_pred CCe-EEEcCCCCccCC
Confidence 764 888988766665
No 312
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=82.42 E-value=16 Score=44.07 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=33.8
Q ss_pred CCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 693 SCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 693 ~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
.++.+|+=+|||. |......++..+ ..|+++|.+++-++.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 3578999999995 555555665543 589999999999998865
No 313
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=81.77 E-value=0.73 Score=41.78 Aligned_cols=69 Identities=22% Similarity=0.256 Sum_probs=52.3
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002345 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (933)
Q Consensus 108 ~~l~~~~~~~f~~~~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (933)
+.+...|.|-|||+=|..+.=|..|+- . =|-||+++||.+ -|+.+ +.+ | +.+|..|.+.
T Consensus 2 e~I~~QvEfYFSd~NL~~D~fLr~~m~------~--~G~Vpl~~ia~F-~rmk~----lt~----d----~~~I~~Al~~ 60 (73)
T cd08038 2 EYIKRQIEYYFSTENLERDFFLRRKMD------L--QGFLPISLIAGF-YRVQA----LTT----N----VDLILEALKD 60 (73)
T ss_pred hHHHhhHHhhcchhhhccCHHHHHHhC------C--CCCEeHHHHhcc-hHHHH----hcC----C----HHHHHHHHHc
Confidence 568899999999999999988887762 2 389999999998 23333 322 2 3678888888
Q ss_pred cCCcEEeecCc
Q 002345 188 LSEFVVTSEGQ 198 (933)
Q Consensus 188 ~~~~~~~s~~~ 198 (933)
++- |-++++.
T Consensus 61 S~~-ve~~~~~ 70 (73)
T cd08038 61 STE-VEIVDQK 70 (73)
T ss_pred CCe-EEEeCCc
Confidence 666 8888874
No 314
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=81.52 E-value=8.8 Score=45.83 Aligned_cols=91 Identities=19% Similarity=0.209 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCC---CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 681 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA---LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 681 qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~---f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
...+.+++.+......+|.|--||+|.++....+.-.. ...+.|.|+++.....|+-++- +. +..
T Consensus 173 ~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~--lh----------gi~ 240 (489)
T COG0286 173 EVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLI--LH----------GIE 240 (489)
T ss_pred HHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHH--Hh----------CCC
Confidence 34455667766656679999999999988765543210 1468999999999999976542 11 111
Q ss_pred -cEEEEEcCccccCC-----CCCCccEEEEcc
Q 002345 758 -SAVLFDGSITVFDS-----RLHGFDIGTCLE 783 (933)
Q Consensus 758 -nVefi~GDaedLp~-----~~~sFDlVVc~e 783 (933)
.+....+|...-|. ....||.|+++-
T Consensus 241 ~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNP 272 (489)
T COG0286 241 GDANIRHGDTLSNPKHDDKDDKGKFDFVIANP 272 (489)
T ss_pred ccccccccccccCCcccccCCccceeEEEeCC
Confidence 34555565544332 235699888843
No 315
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=81.51 E-value=7.3 Score=44.45 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=88.1
Q ss_pred CCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhh---------------hh--cccccCC------
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK---------------LS--KKLDAAV------ 751 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~---------------ls--~~~~~~~------ 751 (933)
.-+||--|||.|+++..|+..| ..+-|=+.|.-|+-...-.+..- .. ...+.+-
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G---~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLG---FKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred CceEEecCCCchhHHHHHHHhc---ccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 4589999999999999999998 67888899998875543333100 00 0000000
Q ss_pred -----CCCCCccEEEEEcCccccCCC---CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHH
Q 002345 752 -----PCTDVKSAVLFDGSITVFDSR---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQ 823 (933)
Q Consensus 752 -----Pr~~~~nVefi~GDaedLp~~---~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~efNs~f~ 823 (933)
++....+.....||+.+.-.. .+.||+|+....|.--. ... .+++.+..+|+||++.|..-- +.-
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~-Nil-eYi~tI~~iLk~GGvWiNlGP-----LlY 300 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH-NIL-EYIDTIYKILKPGGVWINLGP-----LLY 300 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH-HHH-HHHHHHHHhccCCcEEEeccc-----eee
Confidence 111222344456777654322 34799999876554333 333 344569999999966663311 110
Q ss_pred hhccCcCCCCCcchhhhccccccCCCcccccCHHHHHHHHHHHHHHcCcEEEE
Q 002345 824 KSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEF 876 (933)
Q Consensus 824 ~l~~~g~~eYpdEp~g~~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsVEF 876 (933)
. |.++ .+. ...-..+++-+++. .++...||.++-
T Consensus 301 H--------F~d~------~g~-~~~~siEls~edl~----~v~~~~GF~~~k 334 (369)
T KOG2798|consen 301 H--------FEDT------HGV-ENEMSIELSLEDLK----RVASHRGFEVEK 334 (369)
T ss_pred e--------ccCC------CCC-cccccccccHHHHH----HHHHhcCcEEEE
Confidence 0 0000 000 11224567888988 567778998854
No 316
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=81.06 E-value=4.2 Score=41.34 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 681 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 681 qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
.-++.++... ..++..|||.=||+|..+....+.+ .+.+|+|++++..+.|++
T Consensus 179 ~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l~---R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEELG---RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhh-hccceeeehhhhccChHHHHHHHcC---CeEEEEeCCHHHHHHhcC
Confidence 3334444443 3468899999999999999888887 689999999999999864
No 317
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=80.85 E-value=7.6 Score=41.68 Aligned_cols=107 Identities=22% Similarity=0.249 Sum_probs=73.4
Q ss_pred hhcCCCCEEEEEcCCcChHHHHHh----cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 690 IKESCATTLVDFGCGSGSLLDSLL----DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 690 L~~~~g~rVLDIGCGtG~fL~~LA----r~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+-..++..|+|+|.-.|.-+...| ..| +-.+|+|+||+-..++.+.. ..++|.|++|+
T Consensus 65 lw~~~P~lvIE~Gs~~GGSal~fA~~m~s~G-q~~kvl~vdIdi~~~~p~a~-----------------e~p~i~f~egs 126 (237)
T COG3510 65 LWELQPSLVIEFGSRHGGSALFFANMMISIG-QPFKVLGVDIDIKPLDPAAR-----------------EVPDILFIEGS 126 (237)
T ss_pred HHhcCCceeEeeccccCchhhhhhHhHHhcC-CCceEEEEecccCcCChhhh-----------------cCCCeEEEeCC
Confidence 344578899999998776554443 334 34689999999888776632 24689999999
Q ss_pred ccccCC-------CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 766 ITVFDS-------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 766 aedLp~-------~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
-.++.. ..+.--+.+|...-||.. ..++.+. ....+|.-| .+++..-+.
T Consensus 127 s~dpai~eqi~~~~~~y~kIfvilDsdHs~~-hvLAel~-~~~pllsaG~Y~vVeDs~v 183 (237)
T COG3510 127 STDPAIAEQIRRLKNEYPKIFVILDSDHSME-HVLAELK-LLAPLLSAGDYLVVEDSNV 183 (237)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEecCCchHH-HHHHHHH-HhhhHhhcCceEEEecccc
Confidence 877542 122335667777888876 5555554 477888889 777765543
No 318
>PRK11524 putative methyltransferase; Provisional
Probab=80.67 E-value=4 Score=44.92 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=41.0
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 740 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~ 740 (933)
.+++.|||-=||+|..+....+.+ .+.+|+|++++..+.|++++.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHH
Confidence 478999999999999999888887 689999999999999999875
No 319
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=80.62 E-value=6.2 Score=46.39 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=74.5
Q ss_pred HhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc
Q 002345 689 HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 768 (933)
Q Consensus 689 ~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaed 768 (933)
.+.+.++.+|||..+..|.-+..+|..-..-..|++.|.+..-+..-+.+++ +.+..+......|..+
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~------------rlGv~ntiv~n~D~~e 303 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLH------------RLGVTNTIVSNYDGRE 303 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHH------------HhCCCceEEEccCccc
Confidence 3456788999999998887655444321112589999999999988887776 3456677777788776
Q ss_pred cCC--CCCCccEEEE----cc--cc------------------ccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 769 FDS--RLHGFDIGTC----LE--VI------------------EHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 769 Lp~--~~~sFDlVVc----~e--VL------------------EHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
++. ..++||-|+. +. |+ .|+. .+.|. .+..+++|| +++-+|-.
T Consensus 304 f~~~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQ---r~Lll-sAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 304 FPEKEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQ---RELLL-SAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ccccccCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHH---HHHHH-HHHhhccCCcEEEEEeee
Confidence 542 1237998884 33 32 2332 23444 488999999 66666653
No 320
>PHA01634 hypothetical protein
Probab=79.76 E-value=3.7 Score=41.41 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=40.5
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 740 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~ 740 (933)
..+++|+|||.+-|.-...++-.|+ ..|+++++++...+..++.+.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhh
Confidence 3688999999999999888888875 789999999999999987664
No 321
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=78.65 E-value=2.8 Score=43.81 Aligned_cols=64 Identities=23% Similarity=0.428 Sum_probs=57.1
Q ss_pred CCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccccccCCchh
Q 002345 581 SNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 647 (933)
Q Consensus 581 ~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~r~lP~~d 647 (933)
.+|+.+.|+|++.+.+ |+-.++..|...++.|=+|++.++.-|+..|--|.+|...-.. +||.+
T Consensus 4 ~k~~~V~i~Y~~~~~d-g~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~--IpPE~ 67 (174)
T COG1047 4 EKGDVVSLHYTLKVED-GEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVE--IPPED 67 (174)
T ss_pred cCCCEEEEEEEEEecC-CcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEE--eCchH
Confidence 6899999999999999 9888888887789999999999999999999999999988776 66654
No 322
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=78.50 E-value=2.3 Score=45.30 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDIS 728 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS 728 (933)
++.+|||+||..|.++....+..++...|.|||+-
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 67899999999999999888776677899999963
No 323
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=78.40 E-value=3 Score=35.09 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=40.1
Q ss_pred hhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcceec
Q 002345 394 PREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILEC 473 (933)
Q Consensus 394 pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~~ 473 (933)
|+.+|..+|+++++.-|..... ..+ +.....-|.|.|+|. + ..+-
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~-----------------------------~~~-~~~~~~~f~~~~~i~--~--~~~~- 45 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIE-----------------------------EEG-PSHHRPRFICTVYID--G--KEYG- 45 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEE-----------------------------EES-SSSSSEEEEEEEEET--T--EEEE-
T ss_pred CHHHHHHHHHHcCCCCCEEEEE-----------------------------EeC-CCCCCceEEEEEEEC--C--EEEe-
Confidence 7889999999999443333222 011 111112599999882 2 1121
Q ss_pred CchhhhhhhhhhHhhhhhHHHHHH
Q 002345 474 SPKEFYKKQNESIENASLKVLSWL 497 (933)
Q Consensus 474 ~~~~~~~~~~dai~~a~l~~l~~~ 497 (933)
...-.+--+|=|.||.++|..|
T Consensus 46 --~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 46 --EGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp --EEEESSHHHHHHHHHHHHHHHH
T ss_pred --EeccCCHHHHHHHHHHHHHHhC
Confidence 1122355789999999999876
No 324
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=77.96 E-value=1.7 Score=39.78 Aligned_cols=70 Identities=21% Similarity=0.198 Sum_probs=51.1
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002345 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (933)
Q Consensus 108 ~~l~~~~~~~f~~~~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (933)
+.|+..|.|-|||+=|..+.=|..|+ |--|-||+++||.+- |+ |.+- .| +.+|..|.+.
T Consensus 2 e~i~~QvEyYFSd~NL~~D~fL~~~m--------d~~G~Vpi~~iasF~-ri----k~lt----~d----~~~I~~AL~~ 60 (75)
T cd08035 2 ECLKKQLEFCFSRENLSKDLYLISQM--------DSDQFVPIWTVANME-GI----KKLT----TD----MDLILDVLRS 60 (75)
T ss_pred hHHHhhHHhhcCHhhcccCHHHHHhh--------CcCCCEehHHHhccH-HH----HHhc----CC----HHHHHHHHHc
Confidence 57889999999999999998887775 235999999999853 22 3221 12 3567778877
Q ss_pred cCCcEEeecCce
Q 002345 188 LSEFVVTSEGQL 199 (933)
Q Consensus 188 ~~~~~~~s~~~~ 199 (933)
++- |.+|+++-
T Consensus 61 S~~-levsedg~ 71 (75)
T cd08035 61 SPM-VQVDETGE 71 (75)
T ss_pred CCe-EEEcCCCC
Confidence 654 88888763
No 325
>PRK14718 ribonuclease III; Provisional
Probab=77.27 E-value=4.7 Score=47.70 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=46.4
Q ss_pred CChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCcee-eeccccccchHHHHHHHHHHH
Q 002345 16 LTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSV-VSETFKKKKDAEQSAAEKALE 90 (933)
Q Consensus 16 ~tpka~~~---q~~g~~-~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v-~~~~~~~kkdaeq~aa~~al~ 90 (933)
.-||-.+. |+-|-. -.|++.+... |... -.|.+.+.+.+..+ .+|.=+-||.|||.||+.||+
T Consensus 151 kDyKS~LQE~~Qk~~~~~PeY~li~esG-----------PdH~-k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~ 218 (467)
T PRK14718 151 KDAKTLLQEYLQGHKIALPTYTVVATHG-----------AAHN-QQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALD 218 (467)
T ss_pred cCHHHHHHHHHHhcCCCCCeeEEeeeec-----------CCCC-CeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHH
Confidence 35666553 344433 4787654331 2223 38999999998544 578889999999999999999
Q ss_pred HcC
Q 002345 91 KLG 93 (933)
Q Consensus 91 k~g 93 (933)
+|+
T Consensus 219 kL~ 221 (467)
T PRK14718 219 EVT 221 (467)
T ss_pred Hhc
Confidence 998
No 326
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=77.26 E-value=5.4 Score=46.40 Aligned_cols=55 Identities=24% Similarity=0.292 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhc-CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 681 QRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 681 qRve~Ild~L~~-~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
+|+..++..+.. .+...|+|+|.|.|.+...|+-..+ ..|.|||-|+...++|++
T Consensus 139 ~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 139 RRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHH
Confidence 344444444433 3568999999999999999986543 789999999887777764
No 327
>PF14954 LIX1: Limb expression 1
Probab=76.97 E-value=2.2 Score=45.88 Aligned_cols=41 Identities=34% Similarity=0.517 Sum_probs=35.7
Q ss_pred cCCCCCceEEEeeecCCceeee--ccccccchHHHHHHHHHHHH
Q 002345 50 IPQKGPCLYRCSLQLPEFSVVS--ETFKKKKDAEQSAAEKALEK 91 (933)
Q Consensus 50 ~~q~~~~~~~c~l~lp~~~v~~--~~~~~kkdaeq~aa~~al~k 91 (933)
+|-.+| .|-|-+.||++|-.- .+|--|-.|.++||.+||=.
T Consensus 52 ~ps~~p-pyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmN 94 (252)
T PF14954_consen 52 VPSPSP-PYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMN 94 (252)
T ss_pred cCCCCC-CeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHH
Confidence 477788 899999999998765 67888999999999999954
No 328
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=76.50 E-value=5.8 Score=36.89 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=52.9
Q ss_pred ceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC----CCCCccEEEEccccccCChhHHHH
Q 002345 720 EKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS----RLHGFDIGTCLEVIEHMEEDEASQ 795 (933)
Q Consensus 720 ~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~----~~~sFDlVVc~eVLEHLpdD~l~a 795 (933)
..|+.+|.+++.++.+++. .+.++.||..+... .....|.|++..- ++....
T Consensus 22 ~~vvvid~d~~~~~~~~~~-------------------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-----~d~~n~ 77 (116)
T PF02254_consen 22 IDVVVIDRDPERVEELREE-------------------GVEVIYGDATDPEVLERAGIEKADAVVILTD-----DDEENL 77 (116)
T ss_dssp SEEEEEESSHHHHHHHHHT-------------------TSEEEES-TTSHHHHHHTTGGCESEEEEESS-----SHHHHH
T ss_pred CEEEEEECCcHHHHHHHhc-------------------ccccccccchhhhHHhhcCccccCEEEEccC-----CHHHHH
Confidence 5899999999998887542 26789999987532 3457887777532 344443
Q ss_pred HHHHHHHccCCC-EEEEEecCCchhHHHHh
Q 002345 796 FGNIVLSSFRPR-ILIVSTPNYEYNAILQK 824 (933)
Q Consensus 796 L~eeI~rlLKPG-~LIITTPN~efNs~f~~ 824 (933)
..-...+-+.|. .++....+.++...+..
T Consensus 78 ~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~ 107 (116)
T PF02254_consen 78 LIALLARELNPDIRIIARVNDPENAELLRQ 107 (116)
T ss_dssp HHHHHHHHHTTTSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHCCCCeEEEEECCHHHHHHHHH
Confidence 333356667777 77777777666555543
No 329
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=76.24 E-value=2.2 Score=39.57 Aligned_cols=81 Identities=20% Similarity=0.221 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHH
Q 002345 103 AEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIM 182 (933)
Q Consensus 103 ~~e~~~~l~~~~~~~f~~~~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~ 182 (933)
++|--+.|...|.|-|||+=|..+.=|..|+ ..+. =|.||+++||.+- |+-+++. | ..+|.
T Consensus 2 ~~~l~~~I~~QvEfYFSd~NL~~D~fL~~~~----~~~~--dG~Vpl~~i~~F~-rmk~lt~--------d----~~~i~ 62 (82)
T cd08032 2 VKQLLADIAKQVDFWFGDVNLHKDRFLREQI----EKSR--DGYIDISLLVSFN-KMKKLTT--------D----GKLIA 62 (82)
T ss_pred HHHHHHHHHHHHHhhcchhhcccCHHHHHHh----cCCC--CCCEeHHHHhcch-HHHHHcC--------C----HHHHH
Confidence 3566788999999999999888887666664 3223 3899999999984 5666554 1 35788
Q ss_pred HHhhccCCcEEeecCceeeee
Q 002345 183 RAATRLSEFVVTSEGQLSIWR 203 (933)
Q Consensus 183 ~a~~~~~~~~~~s~~~~~~~~ 203 (933)
.|.+.++ .|-+++++.=|+|
T Consensus 63 ~Al~~S~-~lev~ed~~~VRR 82 (82)
T cd08032 63 RALKNSS-VVELNLEGTRIRR 82 (82)
T ss_pred HHHhcCC-EEEEcCCCCccCC
Confidence 8888866 4888988776665
No 330
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=75.74 E-value=16 Score=40.21 Aligned_cols=117 Identities=12% Similarity=0.109 Sum_probs=61.8
Q ss_pred hhhcccCCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChH-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccc
Q 002345 669 MEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKL 747 (933)
Q Consensus 669 ~e~~~F~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~f-L~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~ 747 (933)
.++.+..+.-.-.|..++.+. ....+++||=+|=..-.- +..|...+ .+|+-+||++.+|+.-++....
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~-gdL~gk~il~lGDDDLtSlA~al~~~~---~~I~VvDiDeRll~fI~~~a~~------ 89 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAER-GDLEGKRILFLGDDDLTSLALALTGLP---KRITVVDIDERLLDFINRVAEE------ 89 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHT-T-STT-EEEEES-TT-HHHHHHHHT-----SEEEEE-S-HHHHHHHHHHHHH------
T ss_pred cccccccHHHHHHHHHHHHhc-CcccCCEEEEEcCCcHHHHHHHhhCCC---CeEEEEEcCHHHHHHHHHHHHH------
Confidence 344444555555666666554 335788999999554432 23333333 7999999999999988765542
Q ss_pred ccCCCCCCCccEEEEEcCcccc-CC-CCCCccEEEEcc--ccccCChhHHHHHHHHHHHccCCC
Q 002345 748 DAAVPCTDVKSAVLFDGSITVF-DS-RLHGFDIGTCLE--VIEHMEEDEASQFGNIVLSSFRPR 807 (933)
Q Consensus 748 ~~~~Pr~~~~nVefi~GDaedL-p~-~~~sFDlVVc~e--VLEHLpdD~l~aL~eeI~rlLKPG 807 (933)
.+. +|+.++.|+.+. |. -.++||++++-= .+ +-..+|.......||..
T Consensus 90 ------~gl-~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~-----~G~~LFlsRgi~~Lk~~ 141 (243)
T PF01861_consen 90 ------EGL-PIEAVHYDLRDPLPEELRGKFDVFFTDPPYTP-----EGLKLFLSRGIEALKGE 141 (243)
T ss_dssp ------HT---EEEE---TTS---TTTSS-BSEEEE---SSH-----HHHHHHHHHHHHTB-ST
T ss_pred ------cCC-ceEEEEecccccCCHHHhcCCCEEEeCCCCCH-----HHHHHHHHHHHHHhCCC
Confidence 133 499999999873 32 247899999842 22 33356666677777753
No 331
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=75.22 E-value=8.9 Score=43.99 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=59.1
Q ss_pred hcCCCCEEEEEcCC-cChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc-Cccc
Q 002345 691 KESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG-SITV 768 (933)
Q Consensus 691 ~~~~g~rVLDIGCG-tG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G-Daed 768 (933)
...++++|+=+|+| -|..+..+++.-+ .+|+++|.+++-++.|++.-. -.++.. |...
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGA------------------d~~i~~~~~~~ 222 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGA------------------DHVINSSDSDA 222 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCC------------------cEEEEcCCchh
Confidence 44578899999988 4556777777432 899999999999999976411 122222 1111
Q ss_pred cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC--EEEEEec
Q 002345 769 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTP 814 (933)
Q Consensus 769 Lp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG--~LIITTP 814 (933)
...-...||+|+..-. .+- +. ...+.|++| .+++..|
T Consensus 223 ~~~~~~~~d~ii~tv~-~~~-------~~-~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 223 LEAVKEIADAIIDTVG-PAT-------LE-PSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hHHhHhhCcEEEECCC-hhh-------HH-HHHHHHhcCCEEEEECCC
Confidence 1111223999988655 222 22 366788888 5555555
No 332
>PRK13699 putative methylase; Provisional
Probab=74.90 E-value=9.5 Score=40.99 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=41.1
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhh
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 741 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a 741 (933)
.++..|||-=||+|..+....+.+ .+.+|+|++++..+.|.+++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHHHHH
Confidence 378899999999999999888877 6899999999999999988764
No 333
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=72.52 E-value=30 Score=38.98 Aligned_cols=125 Identities=11% Similarity=0.059 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHhhc---CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002345 678 LSKQRVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 754 (933)
Q Consensus 678 Ly~qRve~Ild~L~~---~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~ 754 (933)
....|..++-+.+.. .....|+-+|||-=.-...+-.-. -.+|.-||. |+.++.=++.+.... ..
T Consensus 73 ~~a~Rtr~fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~~~--~~~vfEvD~-Pevi~~K~~~l~e~~---------~~ 140 (297)
T COG3315 73 FLAARTRYFDDFVRAALDAGIRQVVILGAGLDTRAYRLDWPK--GTRVFEVDL-PEVIEFKKKLLAERG---------AT 140 (297)
T ss_pred hHHHHHHHHHHHHHHHHHhcccEEEEeccccccceeecCCCC--CCeEEECCC-cHHHHHHHHHhhhcC---------CC
Confidence 355566655554432 126899999999655444443221 156777774 455555555554211 11
Q ss_pred CCccEEEEEcCccccCC----C-----CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 755 DVKSAVLFDGSITVFDS----R-----LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 755 ~~~nVefi~GDaedLp~----~-----~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
......++..|+.+.+. . ...--++++-+++.+++++....|...+.....|| .++...+
T Consensus 141 ~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 141 PPAHRRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCceEEEEeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 22368999999985332 2 23344888899999999998888888999999999 6666655
No 334
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=70.56 E-value=2.7 Score=38.88 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHH
Q 002345 105 EAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRA 184 (933)
Q Consensus 105 e~~~~l~~~~~~~f~~~~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a 184 (933)
|--..|..+|.|-|||+=|.-+.=|..|+. .. =|-||+++|+.+- |+.+++. | ..+|..|
T Consensus 3 ~l~~~I~~QvEfYFSd~NL~~D~fLr~~m~----~~---~G~Vpl~~i~~F~-rmk~l~~--------d----~~~i~~A 62 (82)
T cd08028 3 DLEKKIIRQIEYYFGDFNLPRDKFLKEQIK----ED---DGWVPMEVMLKFN-RLKSLSS--------D----PEVIAKA 62 (82)
T ss_pred HHHHHHHHHHHhhcCHhhhccCHHHHHHHh----cc---CCCEEhHHHhCCh-hHHHhcC--------C----HHHHHHH
Confidence 345679999999999998888765555543 22 4889999999884 4555442 1 3788899
Q ss_pred hhccCC-cEEeecCceeeee
Q 002345 185 ATRLSE-FVVTSEGQLSIWR 203 (933)
Q Consensus 185 ~~~~~~-~~~~s~~~~~~~~ 203 (933)
.+.+.. .|.+++++.-|+|
T Consensus 63 l~~S~~~~lev~~d~~~VRR 82 (82)
T cd08028 63 LKKSKSGLIEVSEDKTKIRR 82 (82)
T ss_pred HHhCCCCEEEEcCCCCccCC
Confidence 998763 5788988877765
No 335
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=70.53 E-value=9.2 Score=44.26 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCC----C---CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYP----T---ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g----~---~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
..+..++|||.|+|.++..+++.. + .-.++.-|++|++..++-++.++.. . ..+.+.. -
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~------------~-~~~~~~~-~ 141 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT------------E-DLIRWVE-W 141 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc------------c-cchhHHH-H
Confidence 345689999999999987665432 0 1258999999999988887776521 0 1111110 1
Q ss_pred ccccCCCCCCccEEEEccccccCC
Q 002345 766 ITVFDSRLHGFDIGTCLEVIEHME 789 (933)
Q Consensus 766 aedLp~~~~sFDlVVc~eVLEHLp 789 (933)
.+++ +..-.-+|++++++.-+|
T Consensus 142 ~e~~--p~~~~~i~~~NElfDAlP 163 (370)
T COG1565 142 VEDL--PKKFPGIVVSNELFDALP 163 (370)
T ss_pred HHhc--cccCceEEEechhhcccc
Confidence 1122 222356778899988887
No 336
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=70.45 E-value=1 Score=44.10 Aligned_cols=31 Identities=3% Similarity=0.099 Sum_probs=28.4
Q ss_pred eEeecccccchhhHHh-----hhhccccCCcccccc
Q 002345 612 EFEMGTGAVIPQVEVV-----TAQMSVGQSACFCKE 642 (933)
Q Consensus 612 ef~~g~~~~shhLkvl-----Vtq~reGqsiff~r~ 642 (933)
.|++.|++||+||++| |+..+.|+..+|+.+
T Consensus 39 ~l~lsqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~ 74 (117)
T PRK10141 39 ALDQSQPKISRHLALLRESGLLLDRKQGKWVHYRLS 74 (117)
T ss_pred HHCcCHHHHHHHHHHHHHCCceEEEEEcCEEEEEEC
Confidence 5789999999999999 999999999999954
No 337
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=70.40 E-value=7.5 Score=45.32 Aligned_cols=72 Identities=24% Similarity=0.226 Sum_probs=57.6
Q ss_pred CceeEeecCCCCC-CccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecc-cccchhhHHhhhhccccCCcccc
Q 002345 564 HGIYCLSIGGPDS-GIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGT-GAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 564 ~~~~~~~i~~~d~-~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~-~~~shhLkvlVtq~reGqsiff~ 640 (933)
.+|.=..|+.+++ -..|..|++|.+||+.+|..+ -..++.-+|+|..|. -.|.--|+..|..|++|..+...
T Consensus 84 g~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-----~f~~~~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~ 157 (397)
T KOG0543|consen 84 GGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-----VFDQRELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVT 157 (397)
T ss_pred CceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-----ceeccccceEEecCCccchhHHHHHHHHhcCccceEEEE
Confidence 3555566777766 799999999999999999883 223344449999999 69999999999999999877654
No 338
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=70.08 E-value=2.5 Score=48.49 Aligned_cols=89 Identities=17% Similarity=0.213 Sum_probs=60.2
Q ss_pred HHHHHHh-hcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHH---HHHhhhhhcccccCCCCCCCccE
Q 002345 684 EYALQHI-KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAA---KIIHSKLSKKLDAAVPCTDVKSA 759 (933)
Q Consensus 684 e~Ild~L-~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~Ar---krL~a~ls~~~~~~~Pr~~~~nV 759 (933)
.++.... ...+++-|.|-=-|||.++...+..| +-|+|.||+-.|+...| ..+.+..... .....-+
T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQY------g~~~~fl 267 (421)
T KOG2671|consen 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQY------GSSSQFL 267 (421)
T ss_pred HHHHhhhhccCCCCEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHh------CCcchhh
Confidence 3443333 34578899999999999999999998 78999999999887321 1122111111 0012236
Q ss_pred EEEEcCccccCCC-CCCccEEEE
Q 002345 760 VLFDGSITVFDSR-LHGFDIGTC 781 (933)
Q Consensus 760 efi~GDaedLp~~-~~sFDlVVc 781 (933)
.++.+|....+.. ...||+|+|
T Consensus 268 dvl~~D~sn~~~rsn~~fDaIvc 290 (421)
T KOG2671|consen 268 DVLTADFSNPPLRSNLKFDAIVC 290 (421)
T ss_pred heeeecccCcchhhcceeeEEEe
Confidence 7788888876654 457999999
No 339
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=68.67 E-value=29 Score=39.30 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=38.0
Q ss_pred HhhcCCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHHH
Q 002345 689 HIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI 738 (933)
Q Consensus 689 ~L~~~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~Arkr 738 (933)
.....++.+||.+|||. |..+..+++..+ ..+++++|.+++.++.+++.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 33445678999999987 888888887653 24699999999999888653
No 340
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=66.00 E-value=47 Score=38.93 Aligned_cols=26 Identities=12% Similarity=-0.029 Sum_probs=21.6
Q ss_pred cCccccCCCCCCccEEEEccccccCC
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHME 789 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLp 789 (933)
|++-.--++.++.+++.+...+||+.
T Consensus 151 GSFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 151 GSFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred ccccccccCCCceEEEEeeccceecc
Confidence 45555567789999999999999997
No 341
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=64.45 E-value=17 Score=43.74 Aligned_cols=98 Identities=14% Similarity=0.198 Sum_probs=59.9
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
.-..|+|...|.|.|+.+|.+..--.-.|+-+ ..+..|..--.+ +. |-.++-=.+.++.-+
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR---------------GL---IG~yhDWCE~fsTYP 425 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR---------------GL---IGVYHDWCEAFSTYP 425 (506)
T ss_pred ceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc---------------cc---chhccchhhccCCCC
Confidence 45689999999999999998865212233333 122333322111 11 122222223456667
Q ss_pred CCccEEEEccccccCCh--hHHHHHHHHHHHccCCC-EEEE
Q 002345 774 HGFDIGTCLEVIEHMEE--DEASQFGNIVLSSFRPR-ILIV 811 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpd--D~l~aL~eeI~rlLKPG-~LII 811 (933)
..||+|-+..++.+... +....+. ++-|+|||| .++|
T Consensus 426 RTYDLlHA~~lfs~~~~rC~~~~ill-EmDRILRP~G~~ii 465 (506)
T PF03141_consen 426 RTYDLLHADGLFSLYKDRCEMEDILL-EMDRILRPGGWVII 465 (506)
T ss_pred cchhheehhhhhhhhcccccHHHHHH-HhHhhcCCCceEEE
Confidence 89999999999888762 2224555 499999999 5555
No 342
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=63.50 E-value=1.2 Score=40.69 Aligned_cols=70 Identities=23% Similarity=0.228 Sum_probs=52.2
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002345 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (933)
Q Consensus 108 ~~l~~~~~~~f~~~~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (933)
+.|...|.|-|||+=|..++=|..|+ |.-|-||+++||.+. |+.++.. | +.+|..|.+.
T Consensus 2 e~i~kQvEyYFS~~NL~~D~fLr~~m--------d~~g~Vpi~~ia~F~-rik~Lt~--------D----~~lI~~aL~~ 60 (75)
T cd08036 2 ELLKKTLEFCLSRENLASDMYLISQM--------DSDQYVPIMTVANLD-HIKKLST--------D----VDLIVDVLRS 60 (75)
T ss_pred hhhhcceeeeechhhccccHHHHHHh--------ccCCCEehHHHhccH-HHHHhcC--------C----HHHHHHHHhh
Confidence 45788999999999999999888887 335999999999875 3333322 1 3577788888
Q ss_pred cCCcEEeecCce
Q 002345 188 LSEFVVTSEGQL 199 (933)
Q Consensus 188 ~~~~~~~s~~~~ 199 (933)
++- |.+|+.+-
T Consensus 61 S~~-vevse~g~ 71 (75)
T cd08036 61 LPL-VQVDEKGE 71 (75)
T ss_pred CCe-EEECCCCC
Confidence 664 88887653
No 343
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=62.60 E-value=16 Score=39.58 Aligned_cols=64 Identities=20% Similarity=0.220 Sum_probs=49.0
Q ss_pred EEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-CC-
Q 002345 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-LH- 774 (933)
Q Consensus 697 rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~-~~- 774 (933)
+++|+=||-|.+...|.+.| +.-+.++|+++.+.+.-+.+. + ....+|+.+++.. ..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~-----------------~--~~~~~Di~~~~~~~l~~ 60 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANF-----------------P--EVICGDITEIDPSDLPK 60 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHH-----------------T--EEEESHGGGCHHHHHHH
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhcc-----------------c--ccccccccccccccccc
Confidence 79999999999999999887 578999999999888876643 1 7778888876531 11
Q ss_pred CccEEEE
Q 002345 775 GFDIGTC 781 (933)
Q Consensus 775 sFDlVVc 781 (933)
.+|+++.
T Consensus 61 ~~D~l~g 67 (335)
T PF00145_consen 61 DVDLLIG 67 (335)
T ss_dssp T-SEEEE
T ss_pred cceEEEe
Confidence 5898887
No 344
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=62.22 E-value=23 Score=41.57 Aligned_cols=121 Identities=17% Similarity=0.113 Sum_probs=76.9
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+.+.+...+++...|+|.|.|.+...++..++ ...-+|+++....-+.|..+.........+. ......+++++|+
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~f---Gk~~~~~~~i~gs 259 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHF---GKKPNKIETIHGS 259 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHh---CCCcCceeecccc
Confidence 44666667788999999999999988887763 3567899987765555543222111100011 1124568999999
Q ss_pred ccccCC---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe
Q 002345 766 ITVFDS---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 813 (933)
Q Consensus 766 aedLp~---~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITT 813 (933)
+.+... -....++|+.+.+. +.++..-.+. +++.-+++|.-||++
T Consensus 260 f~~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr~~-eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 260 FLDPKRVTEIQTEATVIFVNNVA--FDPELKLRSK-EILQKCKDGTRIISS 307 (419)
T ss_pred cCCHHHHHHHhhcceEEEEeccc--CCHHHHHhhH-HHHhhCCCcceEecc
Confidence 876543 23467888887774 4434444444 699999999444443
No 345
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=62.10 E-value=48 Score=35.86 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCC-cChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002345 680 KQRVEYALQHIKESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 758 (933)
Q Consensus 680 ~qRve~Ild~L~~~~g~rVLDIGCG-tG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~n 758 (933)
...++.+.+......++.||-+|.= +|.+...+.... .+|+-+||.+.|-... +++
T Consensus 30 ~~K~~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~~---~~vtv~Di~p~~r~~l--------------------p~~ 86 (254)
T COG4017 30 KKKYQAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSKA---DKVTVVDIHPFMRGFL--------------------PNN 86 (254)
T ss_pred HHHHHHhhhhhcccCcceEEEEEeeehhHHHHHHhccc---ceEEEecCCHHHHhcC--------------------CCC
Confidence 3445555555556678899999975 788877666543 7899999998764322 234
Q ss_pred EEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCC--------chhHHHHhhccCcC
Q 002345 759 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY--------EYNAILQKSSSTIQ 830 (933)
Q Consensus 759 Vefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~--------efNs~f~~l~~~g~ 830 (933)
+.|..+ +.+..+.+|+|+-.--|--+.+. ..+-++|+.+++..|.. +||.-..++. +..
T Consensus 87 v~Fr~~----~~~~~G~~DlivDlTGlGG~~Pe--------~L~~fnp~vfiVEdP~gn~~D~~I~eyn~T~eRle-a~e 153 (254)
T COG4017 87 VKFRNL----LKFIRGEVDLIVDLTGLGGIEPE--------FLAKFNPKVFIVEDPKGNVFDVDIYEYNNTYERLE-AFE 153 (254)
T ss_pred ccHhhh----cCCCCCceeEEEeccccCCCCHH--------HHhccCCceEEEECCCCCCCccchhhcCCHHHHHH-hhH
Confidence 666544 33456789999998888888732 44567899999999965 2343333321 000
Q ss_pred CCCCcchhhhccccccC-CCcccccCHHHHHHHHHHHHHHcCcEEEE
Q 002345 831 EDDPDEKTQLQSCKFRN-HDHKFEWTRDQFNCWATELAARHNYSVEF 876 (933)
Q Consensus 831 ~eYpdEp~g~~~~~fRh-~DHkFeWTreEF~~Was~LA~r~GYsVEF 876 (933)
+.+ ..+....++.. ..-.+-.|-+.++..++.|...+| |.|
T Consensus 154 e~~---k~~l~~~~~~AKTSGTmTLtv~tir~aa~~le~~~G--VLY 195 (254)
T COG4017 154 EKA---KVGLLKTYRKAKTSGTMTLTVDTIRDAARELESLDG--VLY 195 (254)
T ss_pred hhh---hhhhhhccccccccceEEEEhHHHHHHHHHHhhhcc--eEE
Confidence 001 11111222211 123466788889988888888777 544
No 346
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=62.01 E-value=5.7 Score=41.46 Aligned_cols=44 Identities=18% Similarity=0.391 Sum_probs=34.5
Q ss_pred CCCccEEEEccccccCC----------hhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 773 LHGFDIGTCLEVIEHME----------EDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLp----------dD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
.++||.+.|..+|||+. .-+..++.+ +.++|||| .+++++|-..
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~-i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAK-IKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHH-HHHhhccCCeEEEEeecCC
Confidence 46899999999999985 122345554 88999999 9999999653
No 347
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=61.89 E-value=14 Score=42.94 Aligned_cols=104 Identities=16% Similarity=0.124 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc-cEEEEEcCccccC-C
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK-SAVLFDGSITVFD-S 771 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~-nVefi~GDaedLp-~ 771 (933)
..-+|||.=+|+|.=+...+.+.+...+|+.-|+|+++++..+++++-. +... .+++.+.|+..+- .
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N-----------~~~~~~~~v~~~DAn~ll~~ 117 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN-----------GLEDERIEVSNMDANVLLYS 117 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC-----------T-SGCCEEEEES-HHHHHCH
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc-----------cccCceEEEehhhHHHHhhh
Confidence 3458999999999877666655223578999999999999999887521 1122 5899999987643 2
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
....||+|=.- =+. .+.. |.+.+.+.++.| .+.||.-
T Consensus 118 ~~~~fD~IDlD----PfG-Sp~p-fldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 118 RQERFDVIDLD----PFG-SPAP-FLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp STT-EEEEEE------SS---HH-HHHHHHHHEEEEEEEEEEE-
T ss_pred ccccCCEEEeC----CCC-CccH-hHHHHHHHhhcCCEEEEecc
Confidence 45679988431 122 3333 445588889888 6666553
No 348
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=61.87 E-value=41 Score=38.15 Aligned_cols=100 Identities=20% Similarity=0.153 Sum_probs=59.8
Q ss_pred CCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc-Cccc--c
Q 002345 694 CATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG-SITV--F 769 (933)
Q Consensus 694 ~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G-Daed--L 769 (933)
.+.+|+=+|||. |.++..+++..+ ..+|+.+|.+++-++.|++...+ ..+..... +... .
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~---------------~~~~~~~~~~~~~~~~ 231 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA---------------DVVVNPSEDDAGAEIL 231 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC---------------eEeecCccccHHHHHH
Confidence 344999999995 666566666542 47999999999999999774321 11111111 1100 0
Q ss_pred CC-CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC--EEEEEecCCc
Q 002345 770 DS-RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPNYE 817 (933)
Q Consensus 770 p~-~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG--~LIITTPN~e 817 (933)
.. ....||+|+=.-- .+ ..+. .+.++++|| ..++.++...
T Consensus 232 ~~t~g~g~D~vie~~G---~~----~~~~-~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 232 ELTGGRGADVVIEAVG---SP----PALD-QALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred HHhCCCCCCEEEECCC---CH----HHHH-HHHHHhcCCCEEEEEeccCCc
Confidence 11 1236999884322 11 1333 488899998 6677776443
No 349
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=61.05 E-value=44 Score=37.05 Aligned_cols=45 Identities=27% Similarity=0.305 Sum_probs=33.3
Q ss_pred cCCCCEEEEEcCC-cChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 692 ESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 692 ~~~g~rVLDIGCG-tG~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
..++.+||=+||| .|.++..+++..+ ..+|+++|.+++-++.+++
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH
Confidence 3467899999987 4556666666542 2479999999999988865
No 350
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=61.01 E-value=28 Score=38.60 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=58.8
Q ss_pred HHHHHHHHhhcC------CCCEEEEEcCCcChHHHHHh--cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002345 682 RVEYALQHIKES------CATTLVDFGCGSGSLLDSLL--DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 753 (933)
Q Consensus 682 Rve~Ild~L~~~------~g~rVLDIGCGtG~fL~~LA--r~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr 753 (933)
-+.++.+.|... +.-++||||.|.-..-..+- ++| .+.+|.|+++..++.|+..+.+..
T Consensus 60 Yih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYg---wrfvGseid~~sl~sA~~ii~~N~---------- 126 (292)
T COG3129 60 YIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYG---WRFVGSEIDSQSLSSAKAIISANP---------- 126 (292)
T ss_pred HHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeec---ceeecCccCHHHHHHHHHHHHcCc----------
Confidence 344455665432 34578999999766544333 344 789999999999999988765321
Q ss_pred CCCccEEEEEcCcccc-----CCCCCCccEEEEccccccCC
Q 002345 754 TDVKSAVLFDGSITVF-----DSRLHGFDIGTCLEVIEHME 789 (933)
Q Consensus 754 ~~~~nVefi~GDaedL-----p~~~~sFDlVVc~eVLEHLp 789 (933)
.....|++....=.+- .-..+.||+++|+--+|--.
T Consensus 127 ~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s~ 167 (292)
T COG3129 127 GLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDSA 167 (292)
T ss_pred chhhheeEEeccCccccccccccccceeeeEecCCCcchhH
Confidence 1112355544322221 11356899999998776544
No 351
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=59.50 E-value=17 Score=43.41 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=65.9
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCC-CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYP-TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g-~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
...+..++|+|-|.|.-...+.... .....++-||.+..|+......+.... .. +.+ ...++.+...- ++
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~-~~---g~~--~v~~~~~~r~~---~p 268 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS-HI---GEP--IVRKLVFHRQR---LP 268 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh-hc---Cch--hccccchhccc---CC
Confidence 3456788889888766444333221 124679999999999999877654200 00 101 11122222211 12
Q ss_pred C-CCCCccEEEEccccccCChhH--HHHHHHHHHHccCCC-EEEEEec
Q 002345 771 S-RLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 771 ~-~~~sFDlVVc~eVLEHLpdD~--l~aL~eeI~rlLKPG-~LIITTP 814 (933)
. ....||+|+|...++|+.... ........++..++| .++|-.+
T Consensus 269 i~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 269 IDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred CCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 2 235699999999999998432 233344456788888 4444433
No 352
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=59.06 E-value=50 Score=33.06 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=58.5
Q ss_pred CCCEEEEEcCCcCh-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 694 CATTLVDFGCGSGS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 694 ~g~rVLDIGCGtG~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
...+|+|||-|-=. ....|+++| ..|+++||.+. .| ...++++..|+.+....
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g---~dv~atDI~~~---~a--------------------~~g~~~v~DDitnP~~~ 66 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERG---FDVLATDINEK---TA--------------------PEGLRFVVDDITNPNIS 66 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcC---CcEEEEecccc---cC--------------------cccceEEEccCCCccHH
Confidence 45599999988543 457788887 78999999986 22 13678999999875432
Q ss_pred -CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002345 773 -LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 817 (933)
Q Consensus 773 -~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~e 817 (933)
-.+.|+|.++-- +++-...+.+ +.+.++- -++|.+.-.+
T Consensus 67 iY~~A~lIYSiRp----ppEl~~~ild-va~aVga-~l~I~pL~Ge 106 (129)
T COG1255 67 IYEGADLIYSIRP----PPELQSAILD-VAKAVGA-PLYIKPLTGE 106 (129)
T ss_pred HhhCccceeecCC----CHHHHHHHHH-HHHhhCC-CEEEEecCCC
Confidence 246788877532 2233344444 5555543 4555444433
No 353
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.03 E-value=13 Score=41.59 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=46.0
Q ss_pred EEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-CCCc
Q 002345 698 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-LHGF 776 (933)
Q Consensus 698 VLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~-~~sF 776 (933)
|+|+=||.|.+...|.+.| +.-+.++|+++.+.+.-+.+.. . .++.+|+.++... ...+
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~-----------------~-~~~~~Di~~~~~~~~~~~ 60 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFG-----------------N-KVPFGDITKISPSDIPDF 60 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCC-----------------C-CCCccChhhhhhhhCCCc
Confidence 6899999999999998876 4667789999998888765431 1 3345677665431 2357
Q ss_pred cEEEE
Q 002345 777 DIGTC 781 (933)
Q Consensus 777 DlVVc 781 (933)
|+++.
T Consensus 61 dvl~g 65 (315)
T TIGR00675 61 DILLG 65 (315)
T ss_pred CEEEe
Confidence 87776
No 354
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=57.97 E-value=2.8 Score=38.16 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=50.1
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002345 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (933)
Q Consensus 108 ~~l~~~~~~~f~~~~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (933)
|.|+..|.|-|||+=|..+.=|..|+- . =|-||+++||.+- |+-++- . | +.+|..|.+.
T Consensus 2 ~~I~~QvEyYFSd~NL~~D~fLr~~md------~--dG~Vpi~~ia~F~-rmk~Lt----~----d----~~~I~~Al~~ 60 (73)
T cd08037 2 DYIKRQIEYYFSVDNLERDFFLRRKMD------E--DGFLPVTLIASFH-RVQALT----T----D----ISLIIKALKD 60 (73)
T ss_pred hHHHHHHHHhccHhhhccCHHHHHHhc------c--CCCEeHHHHhcch-HHHHhc----C----C----HHHHHHHHHc
Confidence 678999999999999988887877762 2 3999999999874 333332 1 2 3567777776
Q ss_pred cCCcEEeecCc
Q 002345 188 LSEFVVTSEGQ 198 (933)
Q Consensus 188 ~~~~~~~s~~~ 198 (933)
++- |-+++..
T Consensus 61 S~~-vev~~~~ 70 (73)
T cd08037 61 SKV-VEIIDMK 70 (73)
T ss_pred CCe-EEEecch
Confidence 554 7777663
No 355
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=57.49 E-value=36 Score=37.88 Aligned_cols=101 Identities=12% Similarity=0.062 Sum_probs=66.4
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChH----HHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQK----SLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 767 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~e----mLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDae 767 (933)
..++.+||=+|.++|.......+.-++-.-|.+|+.|+. .+..|+++ +||--+.-|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------------------tNiiPIiEDAr 215 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------------------TNIIPIIEDAR 215 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc------------------CCceeeeccCC
Confidence 457899999999999988888876656678999999874 34444332 35555566766
Q ss_pred ccCC---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 768 VFDS---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 768 dLp~---~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
.... .-.-.|+|++-- -++++...+.-+..-+||+| .++|+.-
T Consensus 216 hP~KYRmlVgmVDvIFaDv----aqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 216 HPAKYRMLVGMVDVIFADV----AQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred CchheeeeeeeEEEEeccC----CCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 5321 112345555421 12455556655688899999 7777654
No 356
>PRK10458 DNA cytosine methylase; Provisional
Probab=56.69 E-value=49 Score=39.67 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=44.6
Q ss_pred CchHHHHHHHHHHHhhcCC------CCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHH
Q 002345 676 PPLSKQRVEYALQHIKESC------ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI 738 (933)
Q Consensus 676 PPLy~qRve~Ild~L~~~~------g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~Arkr 738 (933)
+++....+..+.+.+...+ .-+++|+=||.|.+...+...| +.-|.++|+++.+.+.-+.+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG--~~~v~a~Eid~~A~~TY~~N 129 (467)
T PRK10458 63 HRLSEAEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIG--GQCVFTSEWNKHAVRTYKAN 129 (467)
T ss_pred CCccHHHHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcC--CEEEEEEechHHHHHHHHHH
Confidence 4555555555655553322 3589999999999999998876 46788999999888777654
No 357
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=54.50 E-value=26 Score=40.00 Aligned_cols=118 Identities=20% Similarity=0.180 Sum_probs=67.7
Q ss_pred CEEEEEcCCcChHHHHHhcCC-------C------------CCceEEEEeCCh--HHHHHHHHHHhhh--hhcccccC--
Q 002345 696 TTLVDFGCGSGSLLDSLLDYP-------T------------ALEKIVGVDISQ--KSLSRAAKIIHSK--LSKKLDAA-- 750 (933)
Q Consensus 696 ~rVLDIGCGtG~fL~~LAr~g-------~------------~f~~VtGVDIS~--emLe~ArkrL~a~--ls~~~~~~-- 750 (933)
.+||-||-|.|.=+..|+... . +--.|+.|||.+ ..++.-...+... .+.. ...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~-a~~~~ 166 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKY-ASAAN 166 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccc-ccccc
Confidence 699999999987554443211 0 012799999976 4454444333311 0000 000
Q ss_pred --CCCCCCccEEEEEcCccccCCCC-------CCccEEEEccccccCC----hhHHHHHHHHHHHccCCC-EEEE-EecC
Q 002345 751 --VPCTDVKSAVLFDGSITVFDSRL-------HGFDIGTCLEVIEHME----EDEASQFGNIVLSSFRPR-ILIV-STPN 815 (933)
Q Consensus 751 --~Pr~~~~nVefi~GDaedLp~~~-------~sFDlVVc~eVLEHLp----dD~l~aL~eeI~rlLKPG-~LII-TTPN 815 (933)
.-.....++.|.+.|+..+.... ...|+|+....+.-+- .....+|. .+-..++|| .++| ..|-
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl-~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLL-RLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHH-HHHhhcCCCcEEEEEcCCC
Confidence 00224457999999998876532 2478888877654332 13334444 599999999 4444 4443
No 358
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=53.80 E-value=8.4 Score=43.14 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHH
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLS 733 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe 733 (933)
..+++|||+|||.|.........+. ..+...|.+.+.++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc--ceeeeEecchhhee
Confidence 3678999999999998877777663 68899999988774
No 359
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=53.32 E-value=18 Score=42.03 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=50.1
Q ss_pred CCccEEEEEcCccccCC--CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 755 DVKSAVLFDGSITVFDS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 755 ~~~nVefi~GDaedLp~--~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
+..+++++++++.+.-. +++++|.++.+..+++++++.+....+.+.+.++|| .++.=+
T Consensus 273 ~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 273 RLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 45789999999988532 468999999999999999988888888899999999 666633
No 360
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=53.25 E-value=27 Score=40.71 Aligned_cols=101 Identities=17% Similarity=0.147 Sum_probs=66.0
Q ss_pred CCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-C
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-L 773 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~-~ 773 (933)
..+|+|.=+|+|.=....+...+ ..+|+.-|+|+++++..++++.- +...+...+..|+..+-.. .
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~------------N~~~~~~v~n~DAN~lm~~~~ 119 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRL------------NSGEDAEVINKDANALLHELH 119 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHh------------cCcccceeecchHHHHHHhcC
Confidence 78999999999998777776653 24899999999999999988752 2233555566776554322 2
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
..||+|=. .=+. .+...+ +.+.+.++.| .+.+|.-
T Consensus 120 ~~fd~IDi----DPFG-SPaPFl-DaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 120 RAFDVIDI----DPFG-SPAPFL-DAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCccEEec----CCCC-CCchHH-HHHHHHhhcCCEEEEEec
Confidence 45666532 1122 333343 4466777775 6666544
No 361
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=51.80 E-value=99 Score=36.23 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=67.8
Q ss_pred hcCCCCEEEEEcCCcChHHHHHhcCCC---CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002345 691 KESCATTLVDFGCGSGSLLDSLLDYPT---ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 767 (933)
Q Consensus 691 ~~~~g~rVLDIGCGtG~fL~~LAr~g~---~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDae 767 (933)
...++.+|||+....|.=+..|.+..- ....|++=|++..-+..-.+.+. + ...+++.+...|+.
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~-~-----------l~~~~~~v~~~~~~ 219 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLK-R-----------LPSPNLLVTNHDAS 219 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHh-c-----------cCCcceeeecccce
Confidence 456889999999999987766655320 01279999999987766666553 1 12233444444443
Q ss_pred ccC---------CCCCCccEEEEc------cccccCCh----------------hHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 768 VFD---------SRLHGFDIGTCL------EVIEHMEE----------------DEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 768 dLp---------~~~~sFDlVVc~------eVLEHLpd----------------D~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.++ .....||-|+|- .++.+-+. =+...+ .+-.++||+| .++-+|-.
T Consensus 220 ~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL-~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 220 LFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRIL-RRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred eccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHH-HHHHHHhcCCCEEEEeccC
Confidence 322 223469988871 23333331 122333 3588999999 77777753
No 362
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=51.54 E-value=31 Score=38.16 Aligned_cols=108 Identities=8% Similarity=0.098 Sum_probs=59.8
Q ss_pred CEEEEEcCCc--ChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC-----CCCccEEEEEcCccc
Q 002345 696 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC-----TDVKSAVLFDGSITV 768 (933)
Q Consensus 696 ~rVLDIGCGt--G~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr-----~~~~nVefi~GDaed 768 (933)
.+|-=||+|. +.+...++..| .+|+.+|.+++.++.+++++..........+.-. ....++++ ..|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG---VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHH
Confidence 4788899994 23455667776 7999999999999998877664433210000000 00112222 233322
Q ss_pred cCCCCCCccEEEEccccccCChhHHHHHHHHHHHcc-CCCEEEEEec
Q 002345 769 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSF-RPRILIVSTP 814 (933)
Q Consensus 769 Lp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlL-KPG~LIITTP 814 (933)
....|+|+-. +.|.+. -....| ..+.+++ +|+.++.+.-
T Consensus 82 ----~~~~d~ViEa-v~E~~~-~K~~l~-~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 82 ----FADRQLVIEA-VVEDEA-VKTEIF-AELDKVVTDPDAVLASNT 121 (286)
T ss_pred ----hCCCCEEEEe-cccCHH-HHHHHH-HHHHHhhCCCCcEEEECC
Confidence 2456766654 444443 222344 4577787 7885555543
No 363
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=51.42 E-value=67 Score=39.62 Aligned_cols=96 Identities=16% Similarity=0.182 Sum_probs=62.9
Q ss_pred CCEEEEEcCCc-ChHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002345 695 ATTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 771 (933)
Q Consensus 695 g~rVLDIGCGt-G~fL-~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~- 771 (933)
..+|+=+|||. |... +.|.+.+ ..++.+|.+++.++.+++. ....+.||..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~d~~~v~~~~~~-------------------g~~v~~GDat~~~~L 457 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG---VKMTVLDHDPDHIETLRKF-------------------GMKVFYGDATRMDLL 457 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC---CCEEEEECCHHHHHHHHhc-------------------CCeEEEEeCCCHHHH
Confidence 35799999984 5544 4455555 6899999999998888541 35688999987642
Q ss_pred ---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 772 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 772 ---~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
.....|++++.. ++++.....-...+.+.|. .++.-+-+.+
T Consensus 458 ~~agi~~A~~vvv~~-----~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~ 502 (621)
T PRK03562 458 ESAGAAKAEVLINAI-----DDPQTSLQLVELVKEHFPHLQIIARARDVD 502 (621)
T ss_pred HhcCCCcCCEEEEEe-----CCHHHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence 235788877642 3333333332356667888 6666565544
No 364
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=50.66 E-value=1.4e+02 Score=33.24 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCC-cChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 679 SKQRVEYALQHIKESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 679 y~qRve~Ild~L~~~~g~rVLDIGCG-tG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
.......+...+.....+++|=+|.= +|.+........ .+|+-+||.|.+.+.-. .
T Consensus 26 ~ekKa~ai~~~le~~~~k~~lI~G~YltG~~iA~~L~~~---~eV~lvDI~p~lk~ll~--------------------~ 82 (252)
T PF06690_consen 26 AEKKANAIKYWLEGEEFKQALIFGAYLTGNFIASALSKK---CEVTLVDIHPHLKELLN--------------------E 82 (252)
T ss_pred HHHHHHHHHHHhcccccceEEEEEEEeehHHHHHHhccC---ceEEEEeCcHHHHHHhc--------------------C
Confidence 34555667777776666799999864 666665555443 48999999998766541 2
Q ss_pred cEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCch
Q 002345 758 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEY 818 (933)
Q Consensus 758 nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~ef 818 (933)
++.|... .......+|+|+-.--|--+.++ ..+-+.|+.++|..|..++
T Consensus 83 ~i~F~~~----~~~~~~~~DlIID~TGlGGv~~~--------~Ls~~~p~v~IVEdP~~~~ 131 (252)
T PF06690_consen 83 NIKFMEF----RNGLEGNPDLIIDTTGLGGVDPD--------FLSKFNPKVFIVEDPKGDG 131 (252)
T ss_pred CCceeec----cCCCCCCCCEEEECCCCCCCCHH--------HHhccCCCEEEEECCCccC
Confidence 4566522 12224589999988888888633 3456789999999999887
No 365
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=50.62 E-value=1e+02 Score=33.82 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=51.3
Q ss_pred EEEEEcCCc--ChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCC
Q 002345 697 TLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 774 (933)
Q Consensus 697 rVLDIGCGt--G~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~ 774 (933)
+|.=||+|. |.+...|.+.+ .+|+++|.+++.++.+.+. +. +.....+. . ...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g---~~V~~~d~~~~~~~~a~~~----------------g~--~~~~~~~~---~-~~~ 56 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG---HTVYGVSRRESTCERAIER----------------GL--VDEASTDL---S-LLK 56 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHC----------------CC--cccccCCH---h-Hhc
Confidence 566789885 45677777776 6899999999888777542 00 11111111 1 124
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002345 775 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 775 sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LII 811 (933)
..|+|+.. ++++....+.+.+...++|+.++.
T Consensus 57 ~aDlVila-----vp~~~~~~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 57 DCDLVILA-----LPIGLLLPPSEQLIPALPPEAIVT 88 (279)
T ss_pred CCCEEEEc-----CCHHHHHHHHHHHHHhCCCCcEEE
Confidence 57887765 343333344455777888885554
No 366
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=50.52 E-value=1e+02 Score=31.77 Aligned_cols=111 Identities=8% Similarity=0.053 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHh----hcCCC-CEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002345 679 SKQRVEYALQHI----KESCA-TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 753 (933)
Q Consensus 679 y~qRve~Ild~L----~~~~g-~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr 753 (933)
+..|..++-+.+ ...++ ..|+.+|||-=.....|....+ ..+++-||. +++++.-++.+......
T Consensus 58 ~~~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~-~~~~~evD~-p~v~~~K~~~l~~~~~~-------- 127 (183)
T PF04072_consen 58 YAARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAG-GVRWFEVDL-PEVIALKRRLLPESGAR-------- 127 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTT-TEEEEEEE--HHHHHHHHHHHHHTHHH--------
T ss_pred HHHHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhcccc-ceEEEEeCC-HHHHHHHHHHHHhCccc--------
Confidence 344555544433 22233 4899999998777777766431 267777774 44666655555432110
Q ss_pred CCCccEEEEEcCccccC---------CCCCCccEEEEccccccCChhHHHHHHHHH
Q 002345 754 TDVKSAVLFDGSITVFD---------SRLHGFDIGTCLEVIEHMEEDEASQFGNIV 800 (933)
Q Consensus 754 ~~~~nVefi~GDaedLp---------~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI 800 (933)
...+.+++.+|+.+.. +.....-++++-.|+.+++++....+.+.+
T Consensus 128 -~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 128 -PPANYRYVPADLRDDSWIDALPKAGFDPDRPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp -HHEESSEEES-TTSHHHHHHHHHCTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred -CCcceeEEeccccchhhHHHHHHhCCCCCCCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 0124567888887532 123445578888899999977776665533
No 367
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=49.44 E-value=12 Score=44.11 Aligned_cols=94 Identities=27% Similarity=0.280 Sum_probs=65.7
Q ss_pred ChHHHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHH
Q 002345 102 SAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYI 181 (933)
Q Consensus 102 ~~~e~~~~l~~~~~~~f~~~~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~ 181 (933)
-+||---+|+..|.|-||||=|..+.=|.-|.| |+ --|.||+++||.+- ||-- ++ .|--+ |
T Consensus 136 lsedl~~kIv~QVEyyFSDenL~~d~fLlkhvr----rn--keGyVpv~~vaSFK-KvK~---LT-----rd~~~----v 196 (484)
T KOG1855|consen 136 LSEDLAAKIVDQVEYYFSDENLLKDAFLLKHVR----RN--KEGYVPVKLVASFK-KVKA---LT-----RDWKL----V 196 (484)
T ss_pred ccHHHHHHHHHHhheeeccccccchHHHHHHHh----cC--CCCceeeehhhhHH-HHHH---Hh-----hhhHH----H
Confidence 356777799999999999998888766666654 54 46999999999873 2211 11 12222 2
Q ss_pred HHHhhccCCcEEeecCceeeeecCCCChhhhhhh
Q 002345 182 MRAATRLSEFVVTSEGQLSIWRKDPYPPEIKESS 215 (933)
Q Consensus 182 ~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 215 (933)
--|.+ -+..+++|++.==.+|-.|+|.--.+-|
T Consensus 197 a~ALr-~S~kL~vseDgkKVrRisPlp~~~~eel 229 (484)
T KOG1855|consen 197 ADALR-KSSKLEVSEDGKKVRRISPLPEFDEEEL 229 (484)
T ss_pred HHHHh-hcceEEEccCCceeeecCCCCCcccccc
Confidence 22333 3555999999999999999986555544
No 368
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=48.77 E-value=66 Score=35.69 Aligned_cols=93 Identities=12% Similarity=0.103 Sum_probs=55.1
Q ss_pred EEEEEcCCc--ChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCC
Q 002345 697 TLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 774 (933)
Q Consensus 697 rVLDIGCGt--G~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~ 774 (933)
+|-=||+|. +.+...|++.+ .+|++.|.+++.++.+++. +. .. ..+..++.....
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g---~~V~~~dr~~~~~~~l~~~----------------g~---~~-~~s~~~~~~~~~ 58 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRG---HDCVGYDHDQDAVKAMKED----------------RT---TG-VANLRELSQRLS 58 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHc----------------CC---cc-cCCHHHHHhhcC
Confidence 466789986 23566777776 7899999999877666431 00 00 012222221223
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002345 775 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 817 (933)
Q Consensus 775 sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~e 817 (933)
..|+|++. ++++....+.+.+...|++|.++|...+..
T Consensus 59 ~~dvIi~~-----vp~~~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 59 APRVVWVM-----VPHGIVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred CCCEEEEE-----cCchHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 46888775 343334444456888899996667665543
No 369
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=48.77 E-value=53 Score=33.94 Aligned_cols=158 Identities=14% Similarity=0.087 Sum_probs=78.2
Q ss_pred EEEEEcCCcCh--HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC-----CCCCCccEEEEEcCcccc
Q 002345 697 TLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV-----PCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 697 rVLDIGCGtG~--fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~-----Pr~~~~nVefi~GDaedL 769 (933)
+|.=||+|.-. +...++..| .+|+-+|.+++.++.+++++...+........ ......++.+ ..|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~ 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG---YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEA 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT---SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGG
T ss_pred CEEEEcCCHHHHHHHHHHHhCC---CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHH
Confidence 46678888532 445566676 79999999999999998877653321100000 0011234553 3454433
Q ss_pred CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe-cCCchhHHHHhhccCcCCCCCcchhhhccccccCC
Q 002345 770 DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST-PNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNH 848 (933)
Q Consensus 770 p~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITT-PN~efNs~f~~l~~~g~~eYpdEp~g~~~~~fRh~ 848 (933)
...|+|+=. +.|.++ -....| +.+.+++.|+.++.+. ....-..+...+ .+|+.-.| ..|-++
T Consensus 77 ----~~adlViEa-i~E~l~-~K~~~~-~~l~~~~~~~~ilasnTSsl~i~~la~~~------~~p~R~ig---~Hf~~P 140 (180)
T PF02737_consen 77 ----VDADLVIEA-IPEDLE-LKQELF-AELDEICPPDTILASNTSSLSISELAAAL------SRPERFIG---MHFFNP 140 (180)
T ss_dssp ----CTESEEEE--S-SSHH-HHHHHH-HHHHCCS-TTSEEEE--SSS-HHHHHTTS------STGGGEEE---EEE-SS
T ss_pred ----hhhheehhh-ccccHH-HHHHHH-HHHHHHhCCCceEEecCCCCCHHHHHhcc------CcCceEEE---Eecccc
Confidence 256665532 234333 223344 4588888888554444 332222222221 11111121 222233
Q ss_pred Ccc--------cccCHHHHHHHHHHHHHHcCcEE
Q 002345 849 DHK--------FEWTRDQFNCWATELAARHNYSV 874 (933)
Q Consensus 849 DHk--------FeWTreEF~~Was~LA~r~GYsV 874 (933)
-|. ...|..+...++..++...|...
T Consensus 141 ~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~gk~p 174 (180)
T PF02737_consen 141 PHLMPLVEVVPGPKTSPETVDRVRALLRSLGKTP 174 (180)
T ss_dssp TTT--EEEEEE-TTS-HHHHHHHHHHHHHTT-EE
T ss_pred cccCceEEEeCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 332 44788899999999998888655
No 370
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=47.99 E-value=70 Score=39.23 Aligned_cols=100 Identities=12% Similarity=0.075 Sum_probs=61.7
Q ss_pred CEEEEEcCCc-ChH-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--
Q 002345 696 TTLVDFGCGS-GSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 771 (933)
Q Consensus 696 ~rVLDIGCGt-G~f-L~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~-- 771 (933)
.+|+=+|+|. |.. .+.|.+++ .+++.+|.+++.++.+++. ....+.||+.+.+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~d~~~v~~~~~~-------------------g~~v~~GDat~~~~L~ 458 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANK---MRITVLERDISAVNLMRKY-------------------GYKVYYGDATQLELLR 458 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCC---CCEEEEECCHHHHHHHHhC-------------------CCeEEEeeCCCHHHHH
Confidence 4677777773 443 34455555 6899999999998888541 35688999987542
Q ss_pred --CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHH
Q 002345 772 --RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAIL 822 (933)
Q Consensus 772 --~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f 822 (933)
.-...|++++. +++++.....-...+.+.|. .++.-+-+.+....+
T Consensus 459 ~agi~~A~~vv~~-----~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L 507 (601)
T PRK03659 459 AAGAEKAEAIVIT-----CNEPEDTMKIVELCQQHFPHLHILARARGRVEAHEL 507 (601)
T ss_pred hcCCccCCEEEEE-----eCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHH
Confidence 23467777764 23233322222256667788 666666665433333
No 371
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=47.97 E-value=1.2e+02 Score=34.04 Aligned_cols=88 Identities=18% Similarity=0.225 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCc-ChHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 694 CATTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 694 ~g~rVLDIGCGt-G~fL-~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
.+.+|+=||.|. |..+ ..|...| .+|+.+|.++...+.++.. + ..+. +..++..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G---a~V~v~~r~~~~~~~~~~~----------------G---~~~~--~~~~l~~ 206 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG---ANVTVGARKSAHLARITEM----------------G---LSPF--HLSELAE 206 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHc----------------C---Ceee--cHHHHHH
Confidence 578999999985 3333 3444555 6999999998766555321 1 1111 1122222
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 813 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITT 813 (933)
....+|+|+..- + . ..+.+.+.+.++||.++|..
T Consensus 207 ~l~~aDiVI~t~-----p-~--~~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 207 EVGKIDIIFNTI-----P-A--LVLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred HhCCCCEEEECC-----C-h--hhhhHHHHHcCCCCcEEEEE
Confidence 235799999852 2 1 12334577789999555533
No 372
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=47.63 E-value=81 Score=35.71 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++...+|+|.-.|.++..|.+++ -.|++||..+ |.+ . +. ....|+....|...+.+.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng~-ma~---s-L~--------------dtg~v~h~r~DGfk~~P~ 267 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRN---MRVYAVDNGP-MAQ---S-LM--------------DTGQVTHLREDGFKFRPT 267 (358)
T ss_pred cCCceeeecccCCCccchhhhhcc---eEEEEeccch-hhh---h-hh--------------cccceeeeeccCcccccC
Confidence 367899999999999999999987 7999999764 221 1 11 223577777777666555
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 807 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG 807 (933)
....|..+|-+|= .+. .....+...|..|
T Consensus 268 r~~idWmVCDmVE-----kP~-rv~~li~~Wl~nG 296 (358)
T COG2933 268 RSNIDWMVCDMVE-----KPA-RVAALIAKWLVNG 296 (358)
T ss_pred CCCCceEEeehhc-----CcH-HHHHHHHHHHHcc
Confidence 6789999998772 222 2223366677766
No 373
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=47.40 E-value=1.6e+02 Score=31.75 Aligned_cols=104 Identities=18% Similarity=0.196 Sum_probs=65.6
Q ss_pred CEEEEEcCCc-C-hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--
Q 002345 696 TTLVDFGCGS-G-SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 771 (933)
Q Consensus 696 ~rVLDIGCGt-G-~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~-- 771 (933)
++++=+|||. | .++..|.+.| ..|+.+|.+++.++.+... ......+++|..+...
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g---~~Vv~Id~d~~~~~~~~~~-----------------~~~~~~v~gd~t~~~~L~ 60 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG---HNVVLIDRDEERVEEFLAD-----------------ELDTHVVIGDATDEDVLE 60 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC---CceEEEEcCHHHHHHHhhh-----------------hcceEEEEecCCCHHHHH
Confidence 3678899994 3 3567777887 7999999999887774221 1256888899877432
Q ss_pred --CCCCccEEEEccccccCChhHHHHHHHHHH-HccCCCEEEEEecCCchhHHHHh
Q 002345 772 --RLHGFDIGTCLEVIEHMEEDEASQFGNIVL-SSFRPRILIVSTPNYEYNAILQK 824 (933)
Q Consensus 772 --~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~-rlLKPG~LIITTPN~efNs~f~~ 824 (933)
....+|+++..- ..+....+.-.+. +.+..-.++.-+.+..+...+.+
T Consensus 61 ~agi~~aD~vva~t-----~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~ 111 (225)
T COG0569 61 EAGIDDADAVVAAT-----GNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEK 111 (225)
T ss_pred hcCCCcCCEEEEee-----CCCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHH
Confidence 345789888742 2334333332233 22333377777777766666554
No 374
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=47.34 E-value=2.9e+02 Score=31.92 Aligned_cols=104 Identities=14% Similarity=0.171 Sum_probs=62.1
Q ss_pred CCCEEEEEcCCc-Ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-
Q 002345 694 CATTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 770 (933)
Q Consensus 694 ~g~rVLDIGCGt-G~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp- 770 (933)
...+++=+|+|. |. +...|.+.+ ..|+.+|.+++.++..++.. ..+.++.||..+..
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~---~~v~vid~~~~~~~~~~~~~-----------------~~~~~i~gd~~~~~~ 289 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEG---YSVKLIERDPERAEELAEEL-----------------PNTLVLHGDGTDQEL 289 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHHC-----------------CCCeEEECCCCCHHH
Confidence 457899999973 22 334555555 68999999999887775431 24678889987542
Q ss_pred ---CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHH
Q 002345 771 ---SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAIL 822 (933)
Q Consensus 771 ---~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~efNs~f 822 (933)
.....+|+|++..- ++....+...+.+.+.+..+++.+-+.++...+
T Consensus 290 L~~~~~~~a~~vi~~~~-----~~~~n~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 339 (453)
T PRK09496 290 LEEEGIDEADAFIALTN-----DDEANILSSLLAKRLGAKKVIALVNRPAYVDLV 339 (453)
T ss_pred HHhcCCccCCEEEECCC-----CcHHHHHHHHHHHHhCCCeEEEEECCcchHHHH
Confidence 13457888876321 223333333344556666555555554444433
No 375
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=47.21 E-value=2.3e+02 Score=32.33 Aligned_cols=162 Identities=11% Similarity=-0.012 Sum_probs=80.5
Q ss_pred CCEEEEEcCCcC--hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC-CCCCCCccEEEEEcCccccCC
Q 002345 695 ATTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA-VPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 695 g~rVLDIGCGtG--~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~-~Pr~~~~nVefi~GDaedLp~ 771 (933)
.++|-=||+|.= .+...++..| .+|+..|++++.++.+++++........... .+.....++.+.. ++. .
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG---~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~---~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHG---LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIE---A 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHH---H
Confidence 357889999942 3455667777 7999999999998887765543222110000 0000111233221 221 1
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCcCCCCCcchhhhccccccCCCcc
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHK 851 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~~~fRh~DHk 851 (933)
.....|+|+-. +.|-+. - ...+.+.+.+.++|+.++-+.-..-....+.... ..|+.-+ ...|-++-|.
T Consensus 80 av~~aDlViEa-vpE~l~-v-K~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~-----~~p~R~~---g~HffnP~~~ 148 (321)
T PRK07066 80 CVADADFIQES-APEREA-L-KLELHERISRAAKPDAIIASSTSGLLPTDFYARA-----THPERCV---VGHPFNPVYL 148 (321)
T ss_pred HhcCCCEEEEC-CcCCHH-H-HHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhc-----CCcccEE---EEecCCcccc
Confidence 12345655543 333332 2 2344456889999996333322221122222110 1111111 1122233332
Q ss_pred --------cccCHHHHHHHHHHHHHHcCcEE
Q 002345 852 --------FEWTRDQFNCWATELAARHNYSV 874 (933)
Q Consensus 852 --------FeWTreEF~~Was~LA~r~GYsV 874 (933)
-.+|..+...++..+....|...
T Consensus 149 ~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~p 179 (321)
T PRK07066 149 LPLVEVLGGERTAPEAVDAAMGIYRALGMRP 179 (321)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHHHcCCEe
Confidence 23687788888888888888543
No 376
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=43.64 E-value=55 Score=32.96 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCcCh-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 693 SCATTLVDFGCGSGS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
....+|+|||-|.=. .+..|.+.| ..|+++|+.+. .|. ..+.++.-|+.+...
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~G---~dV~~tDi~~~---~a~--------------------~g~~~v~DDif~P~l 65 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKERG---FDVIATDINPR---KAP--------------------EGVNFVVDDIFNPNL 65 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHHS----EEEEE-SS-S---------------------------STTEE---SSS--H
T ss_pred CCCCcEEEECcCCCHHHHHHHHHcC---CcEEEEECccc---ccc--------------------cCcceeeecccCCCH
Confidence 345699999999644 567777877 79999999987 221 256788888887553
Q ss_pred C-CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002345 772 R-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 817 (933)
Q Consensus 772 ~-~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~e 817 (933)
. -.+.|+|.+.--=.-|. ..+.+ +++.+.- -++|.+...+
T Consensus 66 ~iY~~a~lIYSiRPP~El~----~~il~-lA~~v~a-dlii~pL~~e 106 (127)
T PF03686_consen 66 EIYEGADLIYSIRPPPELQ----PPILE-LAKKVGA-DLIIRPLGGE 106 (127)
T ss_dssp HHHTTEEEEEEES--TTSH----HHHHH-HHHHHT--EEEEE-BTTB
T ss_pred HHhcCCcEEEEeCCChHHh----HHHHH-HHHHhCC-CEEEECCCCC
Confidence 2 24789999875432222 23333 4444432 6666666655
No 377
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=43.08 E-value=96 Score=34.55 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCC-cChHHHHHhcCCCCCceEEEEeC---ChHHHHHHHH
Q 002345 693 SCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDI---SQKSLSRAAK 737 (933)
Q Consensus 693 ~~g~rVLDIGCG-tG~fL~~LAr~g~~f~~VtGVDI---S~emLe~Ark 737 (933)
..+.+||=+|+| .|.++..+++..+ .+|+++|. +++-++.+++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHH
Confidence 467899999987 3666667777654 58999986 6777776653
No 378
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=43.06 E-value=1.9e+02 Score=31.66 Aligned_cols=42 Identities=26% Similarity=0.208 Sum_probs=31.4
Q ss_pred CEEEEEcCCc--ChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002345 696 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 740 (933)
Q Consensus 696 ~rVLDIGCGt--G~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~ 740 (933)
.+|.=||+|. +.+...|++.| .+|+.+|.+++.++.+.+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G---~~V~~~d~~~~~~~~~~~~~~ 45 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG---FQTTLVDIKQEQLESAQQEIA 45 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHH
Confidence 3678889984 23556666776 689999999999998876543
No 379
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=40.53 E-value=2e+02 Score=36.19 Aligned_cols=106 Identities=16% Similarity=0.097 Sum_probs=60.2
Q ss_pred CEEEEEcCCcC--hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC--CC---CCCCccEEEEEcCccc
Q 002345 696 TTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA--VP---CTDVKSAVLFDGSITV 768 (933)
Q Consensus 696 ~rVLDIGCGtG--~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~--~P---r~~~~nVefi~GDaed 768 (933)
.+|.=||.|+- .+...++..| .+|+-+|++++.++.+.+++...+......+ .+ .....++++. .|+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKG---VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH
Confidence 57999999972 3455666776 7999999999999988877654332210000 00 0011234332 23222
Q ss_pred cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 769 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 769 Lp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
....|+|+=. +.|.+. -....|. ++-++++|+.++-|
T Consensus 390 ----~~~aDlViEa-v~E~l~-~K~~vf~-~l~~~~~~~~ilas 426 (715)
T PRK11730 390 ----FERVDVVVEA-VVENPK-VKAAVLA-EVEQKVREDTILAS 426 (715)
T ss_pred ----hcCCCEEEec-ccCcHH-HHHHHHH-HHHhhCCCCcEEEE
Confidence 2456665533 444443 3334444 58889999855444
No 380
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.52 E-value=50 Score=36.25 Aligned_cols=42 Identities=19% Similarity=0.092 Sum_probs=31.6
Q ss_pred CEEEEEcCCcC--hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002345 696 TTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 740 (933)
Q Consensus 696 ~rVLDIGCGtG--~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~ 740 (933)
.+|.=||+|.- .+...+++.| .+|+.+|++++.++.+++++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G---~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG---FDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHH
Confidence 46888899843 2445666666 689999999999988876643
No 381
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.17 E-value=1.4e+02 Score=32.62 Aligned_cols=109 Identities=14% Similarity=0.148 Sum_probs=57.8
Q ss_pred CEEEEEcCCc--ChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC-CC----CCCccEEEEEcCccc
Q 002345 696 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV-PC----TDVKSAVLFDGSITV 768 (933)
Q Consensus 696 ~rVLDIGCGt--G~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~-Pr----~~~~nVefi~GDaed 768 (933)
.+|.=||+|. +.+...+++.+ .+|+++|++++.++.+++++.+........+. .. ....++.+ ..|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g---~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~ 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG---YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC---CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH
Confidence 3677889984 44666777776 68999999999998776554432211100000 00 00012222 223221
Q ss_pred cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002345 769 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 815 (933)
Q Consensus 769 Lp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN 815 (933)
....|+|+.. +-+.+. ....+.+.+.+.++|+.++++.-+
T Consensus 80 ----~~~aDlVi~a-v~e~~~--~k~~~~~~l~~~~~~~~il~s~ts 119 (282)
T PRK05808 80 ----LKDADLVIEA-ATENMD--LKKKIFAQLDEIAKPEAILATNTS 119 (282)
T ss_pred ----hccCCeeeec-ccccHH--HHHHHHHHHHhhCCCCcEEEECCC
Confidence 2456776654 223222 113444458889999965555443
No 382
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=39.51 E-value=86 Score=35.83 Aligned_cols=90 Identities=12% Similarity=0.020 Sum_probs=41.8
Q ss_pred CCCEEEEEcCCcChHHHHHhcC---------------CCCCceEEEEeCChHHH-HHHHHHHhhhhhcccccCCCCCCCc
Q 002345 694 CATTLVDFGCGSGSLLDSLLDY---------------PTALEKIVGVDISQKSL-SRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~---------------g~~f~~VtGVDIS~emL-e~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
..-+|+|+||.+|..+..+... ..+-.+|+--|.-..-- ...+ .+....... . ....-
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~-~l~~~~~~~----~-~~~~~ 89 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFK-SLPSFQQSL----K-KFRNY 89 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHH-CHHHHHHHH----H-HTTSE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHH-hChhhhhcc----C-CCceE
Confidence 4568999999999987644311 11123677777543211 1111 111110000 0 00111
Q ss_pred cEEEEEcCccccCCCCCCccEEEEccccccCC
Q 002345 758 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHME 789 (933)
Q Consensus 758 nVefi~GDaedLp~~~~sFDlVVc~eVLEHLp 789 (933)
=+.-+-|++-.--++.++.|++++...+||+.
T Consensus 90 f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 90 FVSGVPGSFYGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp EEEEEES-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred EEEecCchhhhccCCCCceEEEEEechhhhcc
Confidence 23444567777667889999999999999986
No 383
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=39.29 E-value=59 Score=36.74 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=50.1
Q ss_pred CCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC-
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL- 773 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~- 773 (933)
..+++|+=||-|.+...+...| +.-+.++|+++..++.-+.+.. ...+..+|+.+.....
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~-----------------~~~~~~~di~~~~~~~~ 63 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFP-----------------HGDIILGDIKELDGEAL 63 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCC-----------------CCceeechHhhcChhhc
Confidence 3579999999999999998887 6789999999999888765432 1445556665543321
Q ss_pred -C-CccEEEEc
Q 002345 774 -H-GFDIGTCL 782 (933)
Q Consensus 774 -~-sFDlVVc~ 782 (933)
. .+|+++..
T Consensus 64 ~~~~~DvligG 74 (328)
T COG0270 64 RKSDVDVLIGG 74 (328)
T ss_pred cccCCCEEEeC
Confidence 1 67888873
No 384
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=38.87 E-value=1.3e+02 Score=35.73 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 693 SCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 693 ~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
..+++|+=+|||. |.....+++..+ .+|+.+|+++.-++.|+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHh
Confidence 4688999999995 555554554433 589999999987777743
No 385
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=38.83 E-value=77 Score=38.79 Aligned_cols=104 Identities=13% Similarity=0.196 Sum_probs=68.6
Q ss_pred CEEEEEcCCcChHHHHHhcC---CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 696 TTLVDFGCGSGSLLDSLLDY---PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 696 ~rVLDIGCGtG~fL~~LAr~---g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
..|+-+|.|.|-+.....+. ...--++++|+-++.++-..+.+ +- +....+|+++.+|+..+..+
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~-----------~~W~~~Vtii~~DMR~w~ap 436 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NF-----------ECWDNRVTIISSDMRKWNAP 436 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-ch-----------hhhcCeeEEEeccccccCCc
Confidence 45788999999887544321 11125799999999887766442 10 23456899999999998865
Q ss_pred CCCccEEEEccccccCChhHH-HHHHHHHHHccCCCEEEEE
Q 002345 773 LHGFDIGTCLEVIEHMEEDEA-SQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l-~aL~eeI~rlLKPG~LIIT 812 (933)
....|++|+ +.|.-+.+.++ ..-.+-+.++|||.++.|+
T Consensus 437 ~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 437 REQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 678898876 34444443332 1122447889999966554
No 386
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=38.71 E-value=1.5e+02 Score=32.62 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=31.9
Q ss_pred CEEEEEcCCc-C-hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002345 696 TTLVDFGCGS-G-SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 740 (933)
Q Consensus 696 ~rVLDIGCGt-G-~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~ 740 (933)
++|.=||+|. | .+...++..| .+|+++|.+++.++.+++++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~~~~ 48 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG---MDVWLLDSDPAALSRGLDSIS 48 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHH
Confidence 4688899994 3 3556667776 799999999999987766554
No 387
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=38.37 E-value=2.1e+02 Score=36.04 Aligned_cols=162 Identities=15% Similarity=0.103 Sum_probs=84.0
Q ss_pred CCEEEEEcCCc-C-hHHHHHh-cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC--CC---CCCCccEEEEEcCc
Q 002345 695 ATTLVDFGCGS-G-SLLDSLL-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA--VP---CTDVKSAVLFDGSI 766 (933)
Q Consensus 695 g~rVLDIGCGt-G-~fL~~LA-r~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~--~P---r~~~~nVefi~GDa 766 (933)
-.+|.=||+|. | .+...++ ..| ..|+-+|++++.++.+.+++...+...-... .+ .....++++. .|.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~ 384 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAG---LPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY 384 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh
Confidence 36899999997 3 3444555 556 7999999999999998776654332110000 00 0011234333 122
Q ss_pred cccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCC-chhHHHHhhccCcCCCCCcchhhhccccc
Q 002345 767 TVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY-EYNAILQKSSSTIQEDDPDEKTQLQSCKF 845 (933)
Q Consensus 767 edLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~-efNs~f~~l~~~g~~eYpdEp~g~~~~~f 845 (933)
. .....|+|+=. +.|.+. -....| +++-++++|+.++.|.-.. .-..+.... ..|+.-+|. .|
T Consensus 385 ~----~~~~aDlViEa-v~E~~~-~K~~v~-~~le~~~~~~~ilasnTS~l~i~~la~~~------~~p~r~ig~---Hf 448 (708)
T PRK11154 385 R----GFKHADVVIEA-VFEDLA-LKQQMV-AEVEQNCAPHTIFASNTSSLPIGQIAAAA------ARPEQVIGL---HY 448 (708)
T ss_pred H----HhccCCEEeec-ccccHH-HHHHHH-HHHHhhCCCCcEEEECCCCCCHHHHHHhc------CcccceEEE---ec
Confidence 1 12456666543 445544 333444 4588999999555443322 222222221 111111211 12
Q ss_pred cCCCcc--------cccCHHHHHHHHHHHHHHcCcEEEE
Q 002345 846 RNHDHK--------FEWTRDQFNCWATELAARHNYSVEF 876 (933)
Q Consensus 846 Rh~DHk--------FeWTreEF~~Was~LA~r~GYsVEF 876 (933)
-++-|. -.-|..+...++..++.+.|.....
T Consensus 449 f~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~ 487 (708)
T PRK11154 449 FSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIV 487 (708)
T ss_pred CCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 233331 2356677777788888888865533
No 388
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=38.16 E-value=63 Score=37.32 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=28.7
Q ss_pred CCCEEEEEcCC-cChHHHHHhc-CCCCCceEEEEeCChHHHHHHHH
Q 002345 694 CATTLVDFGCG-SGSLLDSLLD-YPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 694 ~g~rVLDIGCG-tG~fL~~LAr-~g~~f~~VtGVDIS~emLe~Ark 737 (933)
.+.+|+=+|+| .|..+...++ .| .+|+.+|.+++.++.+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG---a~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG---ATVTILDINIDRLRQLDA 208 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC---CeEEEEECCHHHHHHHHH
Confidence 45679999998 4555544444 44 579999999877665543
No 389
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=38.04 E-value=1.9e+02 Score=36.72 Aligned_cols=161 Identities=17% Similarity=0.136 Sum_probs=84.8
Q ss_pred CEEEEEcCCcC--hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC--CC---CCCCccEEEEEcCccc
Q 002345 696 TTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA--VP---CTDVKSAVLFDGSITV 768 (933)
Q Consensus 696 ~rVLDIGCGtG--~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~--~P---r~~~~nVefi~GDaed 768 (933)
.+|-=||+|+- .+...++..| .+|+-+|++++.++.+.+++........... .+ .....++++. .|+..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKG---LKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCC---CcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH
Confidence 57999999963 2445566666 7999999999999998877664432210000 00 0001233332 22221
Q ss_pred cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE-ecCCchhHHHHhhccCcCCCCCcchhhhccccccC
Q 002345 769 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS-TPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRN 847 (933)
Q Consensus 769 Lp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIIT-TPN~efNs~f~~l~~~g~~eYpdEp~g~~~~~fRh 847 (933)
....|+|+=. |.|.+. -..+.| +++-.+++|+.++.| |-...-..+.... ..|+.-+| ..|-+
T Consensus 412 ----~~~aDlViEA-v~E~l~-~K~~vf-~~l~~~~~~~~ilasNTSsl~i~~la~~~------~~p~r~ig---~Hff~ 475 (737)
T TIGR02441 412 ----FKNADMVIEA-VFEDLS-LKHKVI-KEVEAVVPPHCIIASNTSALPIKDIAAVS------SRPEKVIG---MHYFS 475 (737)
T ss_pred ----hccCCeehhh-ccccHH-HHHHHH-HHHHhhCCCCcEEEEcCCCCCHHHHHhhc------CCccceEE---EeccC
Confidence 2356665533 455554 333444 458899999955444 3332222222221 11111121 12223
Q ss_pred CCcc--------cccCHHHHHHHHHHHHHHcCcEEEE
Q 002345 848 HDHK--------FEWTRDQFNCWATELAARHNYSVEF 876 (933)
Q Consensus 848 ~DHk--------FeWTreEF~~Was~LA~r~GYsVEF 876 (933)
+-|. -..|..+....+..++.+.|.....
T Consensus 476 P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~ 512 (737)
T TIGR02441 476 PVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIV 512 (737)
T ss_pred CcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 3332 2357677777788888888876644
No 390
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=37.85 E-value=78 Score=37.02 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=38.2
Q ss_pred HHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 002345 687 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAA 736 (933)
Q Consensus 687 ld~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~Ar 736 (933)
.+.|...++++||-|..|-...+..|.+.+ .+|++||+++..+...+
T Consensus 28 ~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P---~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 28 MEALNIGPDDRVLTITSAGCNALDYLLAGP---KRIHAVDLNPAQNALLE 74 (380)
T ss_pred HHHhCCCCCCeEEEEccCCchHHHHHhcCC---ceEEEEeCCHHHHHHHH
Confidence 355666788999999988888888877765 89999999998876664
No 391
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=36.35 E-value=1.1e+02 Score=37.83 Aligned_cols=120 Identities=10% Similarity=-0.040 Sum_probs=62.0
Q ss_pred CCCEEEEEcCCcChHHHHHhcC-------CC----CCceEEEEeCCh---HHHHHHHHHHh---hhhhcccccCCCC---
Q 002345 694 CATTLVDFGCGSGSLLDSLLDY-------PT----ALEKIVGVDISQ---KSLSRAAKIIH---SKLSKKLDAAVPC--- 753 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~-------g~----~f~~VtGVDIS~---emLe~ArkrL~---a~ls~~~~~~~Pr--- 753 (933)
..-+|+|+|=|+|.....+.+. .. .--+++++|..+ +.+..+.+... .....+.+...+.
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3468999999999965444321 11 013799999644 44444322100 0000000000000
Q ss_pred -------CCCccEEEEEcCccccCCC-CCCccEEEEccc-cccCChhHHHHHHHHHHHccCCCEEEEEe
Q 002345 754 -------TDVKSAVLFDGSITVFDSR-LHGFDIGTCLEV-IEHMEEDEASQFGNIVLSSFRPRILIVST 813 (933)
Q Consensus 754 -------~~~~nVefi~GDaedLp~~-~~sFDlVVc~eV-LEHLpdD~l~aL~eeI~rlLKPG~LIITT 813 (933)
.+.-+++++.||+.+.-.. ...||+++.-.. -.+-|+---..+.+.++++++||..+.|-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 1122567888998764322 246999987542 22222111134445699999999555544
No 392
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=36.17 E-value=1.1e+02 Score=33.39 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 693 SCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 693 ~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
.++.+||-.|||. |..+..+++..+ ...+++++.++...+.+++
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH
Confidence 3678999999885 667766776543 2379999999888876643
No 393
>PRK05854 short chain dehydrogenase; Provisional
Probab=36.06 E-value=1.7e+02 Score=32.36 Aligned_cols=78 Identities=12% Similarity=-0.005 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.| .+|+.++-+++.++.+.+.+... ....++.++..|+.+..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G---~~Vil~~R~~~~~~~~~~~l~~~-----------~~~~~v~~~~~Dl~d~~ 78 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAG---AEVILPVRNRAKGEAAVAAIRTA-----------VPDAKLSLRALDLSSLA 78 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHh-----------CCCCceEEEEecCCCHH
Confidence 56789999987664 456677777 78999999887766665544321 11236888899987753
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+..|+++.+--+
T Consensus 79 sv~~~~~~~~~~~~~iD~li~nAG~ 103 (313)
T PRK05854 79 SVAALGEQLRAEGRPIHLLINNAGV 103 (313)
T ss_pred HHHHHHHHHHHhCCCccEEEECCcc
Confidence 2 23568999876543
No 394
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.63 E-value=1.2e+02 Score=31.15 Aligned_cols=75 Identities=13% Similarity=0.055 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCcC--h-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSG--S-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG--~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
+++++|=.|++.| . +...|++.| .+|+.+|.++..++.+.+.+.. ...++.+++.|+.+..
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G---~~vi~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 67 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKG---AKLALIDLNQEKLEEAVAECGA-------------LGTEVRGYAANVTDEE 67 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCceEEEEcCCCCHH
Confidence 4678999997433 2 334556666 6899999998776665544321 1236778888876532
Q ss_pred C----------CCCCccEEEEccc
Q 002345 771 S----------RLHGFDIGTCLEV 784 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eV 784 (933)
. ..+.+|+|+.+.-
T Consensus 68 ~~~~~~~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 68 DVEATFAQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 1 1246899998654
No 395
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=34.73 E-value=1.9e+02 Score=34.94 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=56.3
Q ss_pred CEEEEEcCCc-Ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC---
Q 002345 696 TTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--- 770 (933)
Q Consensus 696 ~rVLDIGCGt-G~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp--- 770 (933)
.+++=+|||. |. ..+.|.+++ .+++.+|.+++.++.+++. ....+.||+.+..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g---~~vvvId~d~~~~~~~~~~-------------------g~~~i~GD~~~~~~L~ 475 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG---IPLVVIETSRTRVDELRER-------------------GIRAVLGNAANEEIMQ 475 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHC-------------------CCeEEEcCCCCHHHHH
Confidence 5678888884 33 345555565 6899999999988888531 4678899998743
Q ss_pred -CCCCCccEEEEccccccCChhHHH-HHHHHHHHccCCC-EEEEEecC
Q 002345 771 -SRLHGFDIGTCLEVIEHMEEDEAS-QFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 771 -~~~~sFDlVVc~eVLEHLpdD~l~-aL~eeI~rlLKPG-~LIITTPN 815 (933)
.....+|.+++. .+++... .+.. ..+...|. .++.-+.+
T Consensus 476 ~a~i~~a~~viv~-----~~~~~~~~~iv~-~~~~~~~~~~iiar~~~ 517 (558)
T PRK10669 476 LAHLDCARWLLLT-----IPNGYEAGEIVA-SAREKRPDIEIIARAHY 517 (558)
T ss_pred hcCccccCEEEEE-----cCChHHHHHHHH-HHHHHCCCCeEEEEECC
Confidence 133577866543 2222222 2333 44556777 55544433
No 396
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=33.29 E-value=59 Score=31.44 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=23.9
Q ss_pred EEcCCcC--hHHHHHh--cCCCCCceEEEEeCChHHHHHHHHH
Q 002345 700 DFGCGSG--SLLDSLL--DYPTALEKIVGVDISQKSLSRAAKI 738 (933)
Q Consensus 700 DIGCGtG--~fL~~LA--r~g~~f~~VtGVDIS~emLe~Arkr 738 (933)
|||++.| .....+. ..+ +..+|+++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~-~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCG-PGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS---SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcC-CCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5544442 232 347899999999998888777
No 397
>PRK06125 short chain dehydrogenase; Provisional
Probab=33.13 E-value=1.9e+02 Score=30.48 Aligned_cols=76 Identities=9% Similarity=0.015 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.| .+|++++.+++.++...+.+.. ....++.++..|+.+..
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~------------~~~~~~~~~~~D~~~~~ 70 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEG---CHLHLVARDADALEALAADLRA------------AHGVDVAVHALDLSSPE 70 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHh------------hcCCceEEEEecCCCHH
Confidence 46789999986543 345566776 6899999998877665544431 11235778888887532
Q ss_pred C------CCCCccEEEEccc
Q 002345 771 S------RLHGFDIGTCLEV 784 (933)
Q Consensus 771 ~------~~~sFDlVVc~eV 784 (933)
. ..+..|+++.+..
T Consensus 71 ~~~~~~~~~g~id~lv~~ag 90 (259)
T PRK06125 71 AREQLAAEAGDIDILVNNAG 90 (259)
T ss_pred HHHHHHHHhCCCCEEEECCC
Confidence 1 2356899887653
No 398
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=32.03 E-value=3.5e+02 Score=29.77 Aligned_cols=86 Identities=16% Similarity=0.071 Sum_probs=52.6
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcCh--HHHHHh---cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002345 684 EYALQHIKESCATTLVDFGCGSGS--LLDSLL---DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 758 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~--fL~~LA---r~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~n 758 (933)
+||..+..-...+.++++.|+-|. .+..|+ ++-+ .+++.|-+++..+...++.+... .....
T Consensus 31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~Tg--GR~vCIvp~~~~~~~~~~~l~~~-----------~~~~~ 97 (218)
T PF07279_consen 31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTG--GRHVCIVPDEQSLSEYKKALGEA-----------GLSDV 97 (218)
T ss_pred HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcC--CeEEEEcCChhhHHHHHHHHhhc-----------ccccc
Confidence 556555555566789999776443 233332 3322 68999999988877776665421 11234
Q ss_pred EEEEEcCc-cccCCCCCCccEEEEc
Q 002345 759 AVLFDGSI-TVFDSRLHGFDIGTCL 782 (933)
Q Consensus 759 Vefi~GDa-edLp~~~~sFDlVVc~ 782 (933)
++|+.|+. +++-......|.++.-
T Consensus 98 vEfvvg~~~e~~~~~~~~iDF~vVD 122 (218)
T PF07279_consen 98 VEFVVGEAPEEVMPGLKGIDFVVVD 122 (218)
T ss_pred ceEEecCCHHHHHhhccCCCEEEEe
Confidence 69998884 4444445677777653
No 399
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=31.66 E-value=1.2e+02 Score=34.92 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=40.7
Q ss_pred hhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhh
Q 002345 690 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 741 (933)
Q Consensus 690 L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a 741 (933)
+....+.+|+-||.|-...+..|++.+ .+|..||+++..|...+-++.+
T Consensus 59 m~~g~ghrivtigSGGcn~L~ylsr~P---a~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 59 MQLGIGHRIVTIGSGGCNMLAYLSRAP---ARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred HhcCCCcEEEEecCCcchHHHHhhcCC---ceeEEEeCCHHHHHHHHHHHHH
Confidence 334467899999999999999999987 7999999999988877655554
No 400
>PRK07062 short chain dehydrogenase; Provisional
Probab=31.57 E-value=2.2e+02 Score=30.02 Aligned_cols=78 Identities=14% Similarity=0.036 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.| .+|+.++.+++.++.+.+.+.. .....++.++..|+.+..
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~~~~~~D~~~~~ 72 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAG---ASVAICGRDEERLASAEARLRE-----------KFPGARLLAARCDVLDEA 72 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHh-----------hCCCceEEEEEecCCCHH
Confidence 56789999987653 456667777 6899999998877766554431 111235778888887643
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+..|+++.+-.+
T Consensus 73 ~v~~~~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 73 DVAAFAAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 1 23568998876543
No 401
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=31.30 E-value=4.7e+02 Score=31.45 Aligned_cols=46 Identities=26% Similarity=0.426 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCcChHHHHHhc---CCCCCceEEEEeCChHHHHHHHHHH
Q 002345 694 CATTLVDFGCGSGSLLDSLLD---YPTALEKIVGVDISQKSLSRAAKII 739 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr---~g~~f~~VtGVDIS~emLe~ArkrL 739 (933)
++..|.|.-||+|.++....+ .+.....++|-+....+...|+.++
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm 265 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNM 265 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHH
Confidence 456899999999999865432 1212256999999999998887653
No 402
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=31.09 E-value=3.5e+02 Score=31.30 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=53.7
Q ss_pred EEEEEcCCc-Ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC---
Q 002345 697 TLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS--- 771 (933)
Q Consensus 697 rVLDIGCGt-G~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~--- 771 (933)
+|+=+|+|. |. +...|.+.+ .+|+.+|.+++.++.+++. ..+.++.||..+...
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g---~~v~vid~~~~~~~~~~~~------------------~~~~~~~gd~~~~~~l~~ 60 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGEN---NDVTVIDTDEERLRRLQDR------------------LDVRTVVGNGSSPDVLRE 60 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCC---CcEEEEECCHHHHHHHHhh------------------cCEEEEEeCCCCHHHHHH
Confidence 577788852 22 223444455 6899999999877766431 146788888865321
Q ss_pred -CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 772 -RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 772 -~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
....+|.|++.. +++....+.....+.+.|. .+++-+-+
T Consensus 61 ~~~~~a~~vi~~~-----~~~~~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 61 AGAEDADLLIAVT-----DSDETNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred cCCCcCCEEEEec-----CChHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 245788887753 2233333333355556565 55555443
No 403
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=30.98 E-value=1.7e+02 Score=32.44 Aligned_cols=40 Identities=30% Similarity=0.370 Sum_probs=28.6
Q ss_pred CEEEEEcCCc-C-hHHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 002345 696 TTLVDFGCGS-G-SLLDSLLDYPTALEKIVGVDISQKSLSRAA 736 (933)
Q Consensus 696 ~rVLDIGCGt-G-~fL~~LAr~g~~f~~VtGVDIS~emLe~Ar 736 (933)
.+|.=||+|. | .+...|.+.+ ...+|+++|.+++.++.++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g-~~~~V~~~dr~~~~~~~a~ 48 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLG-LAGEIVGADRSAETRARAR 48 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcC-CCcEEEEEECCHHHHHHHH
Confidence 5788999996 3 3555666654 1248999999998777664
No 404
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=30.89 E-value=95 Score=35.63 Aligned_cols=59 Identities=10% Similarity=0.114 Sum_probs=50.7
Q ss_pred CccEEEEEcCccccCC--CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 756 VKSAVLFDGSITVFDS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 756 ~~nVefi~GDaedLp~--~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
..+|.+.++|+.++-. +.++.|.++...+-.+|++.++..+..++.+-+.|| .+|+-|-
T Consensus 306 ~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRta 367 (414)
T COG5379 306 LRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTA 367 (414)
T ss_pred hhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEecc
Confidence 3478999999988654 678999999999999999999988888999999999 7777553
No 405
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=30.43 E-value=93 Score=34.42 Aligned_cols=68 Identities=10% Similarity=0.212 Sum_probs=46.0
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+....+.....-|.+||.|.|..++.+...+. .++.-|+++...+.-.+.... .........++|
T Consensus 42 IvK~A~~~~~~~v~eIgPgpggitR~il~a~~--~RL~vVE~D~RFip~LQ~L~E-------------Aa~~~~~IHh~D 106 (326)
T KOG0821|consen 42 IVKKAGNLTNAYVYEIGPGPGGITRSILNADV--ARLLVVEKDTRFIPGLQMLSE-------------AAPGKLRIHHGD 106 (326)
T ss_pred HHHhccccccceeEEecCCCCchhHHHHhcch--hheeeeeeccccChHHHHHhh-------------cCCcceEEeccc
Confidence 33444444567899999999999999998773 778888888866655532211 122356777777
Q ss_pred ccc
Q 002345 766 ITV 768 (933)
Q Consensus 766 aed 768 (933)
+..
T Consensus 107 ~LR 109 (326)
T KOG0821|consen 107 VLR 109 (326)
T ss_pred cce
Confidence 654
No 406
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=30.37 E-value=2.6e+02 Score=31.14 Aligned_cols=46 Identities=13% Similarity=-0.000 Sum_probs=33.4
Q ss_pred hhcCCCCEEEEEcCC-cChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 690 IKESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 690 L~~~~g~rVLDIGCG-tG~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
....++.+||=.|+| .|.++..+++..+ .+|+++|.+++-++.|++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLALA 207 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH
Confidence 344567899999986 4445566666543 579999999988888865
No 407
>PRK08703 short chain dehydrogenase; Provisional
Probab=30.25 E-value=2.1e+02 Score=29.64 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHH
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKII 739 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL 739 (933)
++++||-.|++.|. +...|++.| .+|++++.++..++...+.+
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g---~~V~~~~r~~~~~~~~~~~l 50 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAG---ATVILVARHQKKLEKVYDAI 50 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcC---CEEEEEeCChHHHHHHHHHH
Confidence 46789999975443 445666666 68999999987666554443
No 408
>PRK08339 short chain dehydrogenase; Provisional
Probab=30.13 E-value=2e+02 Score=30.75 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.| .+|+.+|.+++.++...+.+.. ....++.++.+|+.+..
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~------------~~~~~~~~~~~Dv~~~~ 71 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAG---ADVILLSRNEENLKKAREKIKS------------ESNVDVSYIVADLTKRE 71 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh------------hcCCceEEEEecCCCHH
Confidence 56788999987654 556777887 6899999998877666554431 11235788888987643
Q ss_pred C---------CCCCccEEEEccc
Q 002345 771 S---------RLHGFDIGTCLEV 784 (933)
Q Consensus 771 ~---------~~~sFDlVVc~eV 784 (933)
. ..+..|+++.+.-
T Consensus 72 ~i~~~~~~~~~~g~iD~lv~nag 94 (263)
T PRK08339 72 DLERTVKELKNIGEPDIFFFSTG 94 (263)
T ss_pred HHHHHHHHHHhhCCCcEEEECCC
Confidence 1 1246898887653
No 409
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=30.11 E-value=4.2e+02 Score=33.55 Aligned_cols=162 Identities=17% Similarity=0.130 Sum_probs=84.4
Q ss_pred CCEEEEEcCCcCh--HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC--C---CCCCccEEEEEcCcc
Q 002345 695 ATTLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV--P---CTDVKSAVLFDGSIT 767 (933)
Q Consensus 695 g~rVLDIGCGtG~--fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~--P---r~~~~nVefi~GDae 767 (933)
-.+|-=||+|+-. +...++..| .+|+-+|++++.++.+++++..........+. + .....+++.. .|..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 388 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKG---TPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYA 388 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHH
Confidence 3579999999633 445566776 79999999999999988776543322100000 0 0011233332 1221
Q ss_pred ccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecC-CchhHHHHhhccCcCCCCCcchhhhcccccc
Q 002345 768 VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN-YEYNAILQKSSSTIQEDDPDEKTQLQSCKFR 846 (933)
Q Consensus 768 dLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN-~efNs~f~~l~~~g~~eYpdEp~g~~~~~fR 846 (933)
.....|+|+=. |.|.+. -....|. ++-++++|+.++-|.-. ..-..+.... .+|+.-+| ..|-
T Consensus 389 ----~~~~aDlViEa-v~E~l~-~K~~vf~-~l~~~~~~~~ilasnTS~l~i~~ia~~~------~~p~r~ig---~Hff 452 (714)
T TIGR02437 389 ----GFDNVDIVVEA-VVENPK-VKAAVLA-EVEQHVREDAILASNTSTISISLLAKAL------KRPENFCG---MHFF 452 (714)
T ss_pred ----HhcCCCEEEEc-CcccHH-HHHHHHH-HHHhhCCCCcEEEECCCCCCHHHHHhhc------CCcccEEE---EecC
Confidence 12456776644 556654 3334554 58899999855444332 2222222221 11111111 1222
Q ss_pred CCCcc--------cccCHHHHHHHHHHHHHHcCcEEEE
Q 002345 847 NHDHK--------FEWTRDQFNCWATELAARHNYSVEF 876 (933)
Q Consensus 847 h~DHk--------FeWTreEF~~Was~LA~r~GYsVEF 876 (933)
++-|. -.-|..+....+..++.+.|.....
T Consensus 453 ~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~ 490 (714)
T TIGR02437 453 NPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPIV 490 (714)
T ss_pred CCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 33332 2246566666777788887765533
No 410
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=29.46 E-value=1e+02 Score=34.25 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCC----CCceEEEEeCCh
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPT----ALEKIVGVDISQ 729 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~----~f~~VtGVDIS~ 729 (933)
+...++|+|||.|.++.++++... +...++-||-..
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 456899999999999998886541 235789999754
No 411
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=29.22 E-value=2e+02 Score=30.36 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=47.6
Q ss_pred EEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--
Q 002345 697 TLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 771 (933)
Q Consensus 697 rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~-- 771 (933)
++|=.|.+.|. +...|++.| .+|+.++.+++.++.+.+.+.. ..++.++.+|+.+...
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~--------------~~~~~~~~~Dv~d~~~~~ 64 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKG---ARVVISSRNEENLEKALKELKE--------------YGEVYAVKADLSDKDDLK 64 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHh--------------cCCceEEEcCCCCHHHHH
Confidence 57778876543 455667777 6899999998877766554431 1256788888876421
Q ss_pred --------CCCCccEEEEccc
Q 002345 772 --------RLHGFDIGTCLEV 784 (933)
Q Consensus 772 --------~~~sFDlVVc~eV 784 (933)
..+..|+++.+.-
T Consensus 65 ~~~~~~~~~~g~id~li~naG 85 (259)
T PRK08340 65 NLVKEAWELLGGIDALVWNAG 85 (259)
T ss_pred HHHHHHHHhcCCCCEEEECCC
Confidence 2357899987654
No 412
>PRK07890 short chain dehydrogenase; Provisional
Probab=28.93 E-value=2.2e+02 Score=29.60 Aligned_cols=76 Identities=20% Similarity=0.083 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.+++||=.|++.|. +...|+++| .+|+++|.++..++...+.+.. ...++.++..|+.+..
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 67 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAG---ADVVLAARTAERLDEVAAEIDD-------------LGRRALAVPTDITDED 67 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHH-------------hCCceEEEecCCCCHH
Confidence 45789988876543 445677777 6899999998766655444321 1235788888987642
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+..|+|+.+...
T Consensus 68 ~~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 68 QCANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHHHHcCCccEEEECCcc
Confidence 1 12468999887643
No 413
>PRK06197 short chain dehydrogenase; Provisional
Probab=28.55 E-value=2.7e+02 Score=30.33 Aligned_cols=79 Identities=16% Similarity=0.045 Sum_probs=50.7
Q ss_pred CCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 693 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
..+++||=.|+..|. +...|++.| .+|+.++.+.+..+.+.+.+... ....++.++.+|+.+.
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G---~~vi~~~r~~~~~~~~~~~l~~~-----------~~~~~~~~~~~Dl~d~ 79 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKG---AHVVLAVRNLDKGKAAAARITAA-----------TPGADVTLQELDLTSL 79 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCH
Confidence 356789988875443 345566776 68999998877666554444310 1123678889998765
Q ss_pred CC----------CCCCccEEEEcccc
Q 002345 770 DS----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 770 p~----------~~~sFDlVVc~eVL 785 (933)
.. ..+.+|+++.+..+
T Consensus 80 ~~v~~~~~~~~~~~~~iD~li~nAg~ 105 (306)
T PRK06197 80 ASVRAAADALRAAYPRIDLLINNAGV 105 (306)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCcc
Confidence 31 12468999886644
No 414
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=28.06 E-value=1e+02 Score=34.42 Aligned_cols=96 Identities=22% Similarity=0.256 Sum_probs=61.1
Q ss_pred CCEEEEEcCCcChHHHHHhcCCC-----CCc---eEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYPT-----ALE---KIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 766 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g~-----~f~---~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDa 766 (933)
-.+|+|+....|.+...|.+.-. ... .|++||+-+- ...+.|.-+++|+
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------------------aPI~GV~qlq~DI 98 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------------------APIEGVIQLQGDI 98 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------------------CccCceEEeeccc
Confidence 46899999999999988775320 001 3999997541 1345788889999
Q ss_pred cccC--------CCCCCccEEEEccc-----cccCChhHH-HHH---HHHHHHccCCCEEEEEe
Q 002345 767 TVFD--------SRLHGFDIGTCLEV-----IEHMEEDEA-SQF---GNIVLSSFRPRILIVST 813 (933)
Q Consensus 767 edLp--------~~~~sFDlVVc~eV-----LEHLpdD~l-~aL---~eeI~rlLKPG~LIITT 813 (933)
+... +.....|+|+|-.. ||.+++-.. +.+ ......+|+||.-+|.-
T Consensus 99 T~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 99 TSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred CCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 8753 23458999999654 566652111 111 22345789999555543
No 415
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=27.84 E-value=2e+02 Score=29.96 Aligned_cols=76 Identities=8% Similarity=0.013 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
++++||=.|+..|. +...|++.| .+|+++|.+...++...+.+.. ....++.++.+|+...+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G---~~Vi~~~r~~~~~~~~~~~l~~------------~~~~~~~~~~~d~~~~~ 75 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHG---ATVILLGRTEEKLEAVYDEIEA------------AGGPQPAIIPLDLLTAT 75 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CcEEEEeCCHHHHHHHHHHHHh------------cCCCCceEEEecccCCC
Confidence 67789999965432 335566666 6899999998766555444331 12235667777775321
Q ss_pred C------------CCCCccEEEEccc
Q 002345 771 S------------RLHGFDIGTCLEV 784 (933)
Q Consensus 771 ~------------~~~sFDlVVc~eV 784 (933)
. ..+..|.|+.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~id~vi~~Ag 101 (247)
T PRK08945 76 PQNYQQLADTIEEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 1 1246899987653
No 416
>PF09263 PEX-2N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015343 This domain adopts a Cdc48 domain 2-like fold, with a beta-alpha-beta(3) arrangement. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; PDB: 1WLF_A.
Probab=27.65 E-value=39 Score=31.87 Aligned_cols=18 Identities=17% Similarity=0.503 Sum_probs=12.8
Q ss_pred HHHHHhcCCCCCCeEEEE
Q 002345 256 DVIARNLDQTDGNKILVS 273 (933)
Q Consensus 256 ~~ia~~l~~~d~~~v~~s 273 (933)
--++++||++||-+|++-
T Consensus 66 rqlgeKLGl~dGeQvfLr 83 (87)
T PF09263_consen 66 RQLGEKLGLSDGEQVFLR 83 (87)
T ss_dssp HHHHHHTT--TT-EEEEE
T ss_pred HHHHHhhCCCcCCeEeee
Confidence 358999999999999973
No 417
>PRK12829 short chain dehydrogenase; Provisional
Probab=27.34 E-value=3e+02 Score=28.75 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=49.7
Q ss_pred HhhcCCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 689 HIKESCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 689 ~L~~~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
.+...+++++|-.|++.|. +...|+++| .+|++++-+++.++...+... .. ++.++.+|
T Consensus 5 ~~~~~~~~~vlItGa~g~iG~~~a~~L~~~g---~~V~~~~r~~~~~~~~~~~~~--------------~~-~~~~~~~D 66 (264)
T PRK12829 5 LLKPLDGLRVLVTGGASGIGRAIAEAFAEAG---ARVHVCDVSEAALAATAARLP--------------GA-KVTATVAD 66 (264)
T ss_pred HhhccCCCEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHh--------------cC-ceEEEEcc
Confidence 3444577899999986432 334556666 689999998876655433221 11 56888888
Q ss_pred ccccCC----------CCCCccEEEEccc
Q 002345 766 ITVFDS----------RLHGFDIGTCLEV 784 (933)
Q Consensus 766 aedLp~----------~~~sFDlVVc~eV 784 (933)
+.+... ....+|+|+....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 67 VADPAQVERVFDTAVERFGGLDVLVNNAG 95 (264)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 876431 1246899987553
No 418
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=27.21 E-value=4.7e+02 Score=31.74 Aligned_cols=106 Identities=13% Similarity=0.196 Sum_probs=58.5
Q ss_pred CCEEEEEcCCc-C-hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC--C---CCCCccEEEEEcCcc
Q 002345 695 ATTLVDFGCGS-G-SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV--P---CTDVKSAVLFDGSIT 767 (933)
Q Consensus 695 g~rVLDIGCGt-G-~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~--P---r~~~~nVefi~GDae 767 (933)
-.+|-=||.|. | .+...++..| ..|+..|.+++.++.+.+++..........+. + .....++... .|..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG---~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 82 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAG---HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALA 82 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence 45788899985 3 3556677777 79999999999999987666543322100000 0 0001123332 2332
Q ss_pred ccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002345 768 VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 768 dLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LII 811 (933)
+ ....|+|+-. +.|.+. -....| ..+..+++|+.++.
T Consensus 83 ~----~~~aDlViEa-v~E~~~-vK~~vf-~~l~~~~~~~aila 119 (507)
T PRK08268 83 D----LADCDLVVEA-IVERLD-VKQALF-AQLEAIVSPDCILA 119 (507)
T ss_pred H----hCCCCEEEEc-CcccHH-HHHHHH-HHHHhhCCCCcEEE
Confidence 2 2356766654 444443 222333 34777888885553
No 419
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=27.15 E-value=1.8e+02 Score=31.75 Aligned_cols=78 Identities=10% Similarity=0.074 Sum_probs=43.2
Q ss_pred HHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccC
Q 002345 709 LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHM 788 (933)
Q Consensus 709 L~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHL 788 (933)
.+.|.+.+ +..+|+|+|.++..++.|.+. +. +.-...+.. ....+|+|+..-
T Consensus 2 A~aL~~~g-~~~~v~g~d~~~~~~~~a~~~----------------g~--~~~~~~~~~----~~~~~Dlvvlav----- 53 (258)
T PF02153_consen 2 ALALRKAG-PDVEVYGYDRDPETLEAALEL----------------GI--IDEASTDIE----AVEDADLVVLAV----- 53 (258)
T ss_dssp HHHHHHTT-TTSEEEEE-SSHHHHHHHHHT----------------TS--SSEEESHHH----HGGCCSEEEE-S-----
T ss_pred hHHHHhCC-CCeEEEEEeCCHHHHHHHHHC----------------CC--eeeccCCHh----HhcCCCEEEEcC-----
Confidence 45667776 347999999999999888542 11 001111111 123579888763
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEEec
Q 002345 789 EEDEASQFGNIVLSSFRPRILIVSTP 814 (933)
Q Consensus 789 pdD~l~aL~eeI~rlLKPG~LIITTP 814 (933)
|.+....+.+++...+++|.+++.+-
T Consensus 54 P~~~~~~~l~~~~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 54 PVSAIEDVLEEIAPYLKPGAIVTDVG 79 (258)
T ss_dssp -HHHHHHHHHHHHCGS-TTSEEEE--
T ss_pred CHHHHHHHHHHhhhhcCCCcEEEEeC
Confidence 43444455566888888885555443
No 420
>PRK09242 tropinone reductase; Provisional
Probab=26.98 E-value=3.1e+02 Score=28.74 Aligned_cols=78 Identities=12% Similarity=0.057 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.| .+|+.++.+.+.++...+.+.. .....++.++.+|+.+..
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G---~~v~~~~r~~~~~~~~~~~l~~-----------~~~~~~~~~~~~Dl~~~~ 73 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLG---ADVLIVARDADALAQARDELAE-----------EFPEREVHGLAADVSDDE 73 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHh-----------hCCCCeEEEEECCCCCHH
Confidence 46789999986543 455667777 6899999988776665544431 111236788889987632
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+.+|+|+.....
T Consensus 74 ~~~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 74 DRRAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 1 23578998876654
No 421
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=26.97 E-value=90 Score=36.10 Aligned_cols=62 Identities=24% Similarity=0.404 Sum_probs=51.8
Q ss_pred CCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccccccCCc
Q 002345 580 PSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPP 645 (933)
Q Consensus 580 p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~r~lP~ 645 (933)
+..|..|.|+|++++ +|+.+... ..+++.|.+|.+.+..-++..+.-|.+|....+..+.|.
T Consensus 147 ~~~gD~V~v~~~~~~--dg~~~~~~--~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~ 208 (408)
T TIGR00115 147 AEKGDRVTIDFEGFI--DGEAFEGG--KAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPE 208 (408)
T ss_pred cCCCCEEEEEEEEEE--CCEECcCC--CCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCcc
Confidence 378999999999875 68766543 357899999999999999999999999999988876553
No 422
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=26.95 E-value=4e+02 Score=33.57 Aligned_cols=161 Identities=14% Similarity=0.081 Sum_probs=83.5
Q ss_pred CEEEEEcCCcCh--HHHHHh-cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC--CC---CCCCccEEEEEcCcc
Q 002345 696 TTLVDFGCGSGS--LLDSLL-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA--VP---CTDVKSAVLFDGSIT 767 (933)
Q Consensus 696 ~rVLDIGCGtG~--fL~~LA-r~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~--~P---r~~~~nVefi~GDae 767 (933)
.+|.=||+|+-. +...++ ..| .+|+-+|++++.++.+.+++...+....... .+ .....++++. .|+.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~ 380 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAG---IPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDYR 380 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CChH
Confidence 579999999643 233444 356 7899999999999998776654332110000 00 0001234333 2322
Q ss_pred ccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE-ecCCchhHHHHhhccCcCCCCCcchhhhcccccc
Q 002345 768 VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS-TPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFR 846 (933)
Q Consensus 768 dLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIIT-TPN~efNs~f~~l~~~g~~eYpdEp~g~~~~~fR 846 (933)
.....|+|+=. +.|.+. -....|. ++-++++|+.++.| |-...-..+..... .|+.-+| ..|-
T Consensus 381 ----~~~~adlViEa-v~E~l~-~K~~v~~-~l~~~~~~~~ilasnTS~l~i~~la~~~~------~p~r~~g---~Hff 444 (699)
T TIGR02440 381 ----GFKDVDIVIEA-VFEDLA-LKHQMVK-DIEQECAAHTIFASNTSSLPIGQIAAAAS------RPENVIG---LHYF 444 (699)
T ss_pred ----HhccCCEEEEe-ccccHH-HHHHHHH-HHHhhCCCCcEEEeCCCCCCHHHHHHhcC------CcccEEE---EecC
Confidence 22456766643 455553 3334444 58889999844443 33222222222211 1111111 1122
Q ss_pred CCCcc--------cccCHHHHHHHHHHHHHHcCcEEEE
Q 002345 847 NHDHK--------FEWTRDQFNCWATELAARHNYSVEF 876 (933)
Q Consensus 847 h~DHk--------FeWTreEF~~Was~LA~r~GYsVEF 876 (933)
++-|. -..|.++...++..++...|.....
T Consensus 445 nP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~ 482 (699)
T TIGR02440 445 SPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIV 482 (699)
T ss_pred CccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 33222 2357777888888888888876644
No 423
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=26.67 E-value=95 Score=31.79 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=52.9
Q ss_pred cCCCCEEEEEcCC-cChHHH-HHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 692 ESCATTLVDFGCG-SGSLLD-SLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 692 ~~~g~rVLDIGCG-tG~fL~-~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
...+++|.=||+| .|.-.. .+...| .+|+++|.+...-..+... .+ ...++.++
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~~~~~~~~~~~~-------------------~~--~~~~l~el 88 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFG---MRVIGYDRSPKPEEGADEF-------------------GV--EYVSLDEL 88 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT----EEEEEESSCHHHHHHHHT-------------------TE--EESSHHHH
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCC---ceeEEecccCChhhhcccc-------------------cc--eeeehhhh
Confidence 3468899999998 465444 444455 7999999998765522110 11 11233332
Q ss_pred CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002345 770 DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 815 (933)
Q Consensus 770 p~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN 815 (933)
....|+|+...-+. ++....+-+..+..+|+|.++|.+-.
T Consensus 89 ---l~~aDiv~~~~plt---~~T~~li~~~~l~~mk~ga~lvN~aR 128 (178)
T PF02826_consen 89 ---LAQADIVSLHLPLT---PETRGLINAEFLAKMKPGAVLVNVAR 128 (178)
T ss_dssp ---HHH-SEEEE-SSSS---TTTTTSBSHHHHHTSTTTEEEEESSS
T ss_pred ---cchhhhhhhhhccc---cccceeeeeeeeeccccceEEEeccc
Confidence 23578887754431 11112223347789999988887654
No 424
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.64 E-value=3.6e+02 Score=29.75 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=31.2
Q ss_pred CEEEEEcCCc--ChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHH
Q 002345 696 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKII 739 (933)
Q Consensus 696 ~rVLDIGCGt--G~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL 739 (933)
.+|.=||+|. +.+...|++.+ .+|+++|.+++.++.+++.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g---~~V~~~d~~~~~~~~~~~~~ 47 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG---LQVVLIDVMEGALERARGVI 47 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHHH
Confidence 4688899994 33556667766 68999999999988887643
No 425
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.54 E-value=95 Score=35.99 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=35.2
Q ss_pred cCCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 692 ESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 692 ~~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
...+.+||=+|+|. |.++...++..+ ..+|+.+|+++.-|+.|++
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK 212 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH
Confidence 34788999999995 555555555432 4799999999999999987
No 426
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=26.40 E-value=3.1e+02 Score=28.79 Aligned_cols=77 Identities=16% Similarity=0.072 Sum_probs=49.8
Q ss_pred CCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 693 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
..++++|=.|+..|. +...|+++| .+|+.++-+...++...+.+.. ...++.++.+|+.+.
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~i~~-------------~~~~~~~~~~Dl~d~ 73 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAG---ARVVLSARKAEELEEAAAHLEA-------------LGIDALWIAADVADE 73 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCeEEEEEccCCCH
Confidence 356789999954332 334555666 6899999988777666544431 123577889998874
Q ss_pred CC----------CCCCccEEEEcccc
Q 002345 770 DS----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 770 p~----------~~~sFDlVVc~eVL 785 (933)
.. ....+|+|+.+...
T Consensus 74 ~~i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 74 ADIERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 32 12468999887543
No 427
>PLN02256 arogenate dehydrogenase
Probab=26.34 E-value=4e+02 Score=30.14 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCCc--ChHHHHHhcCCCCCceEEEEeCChH
Q 002345 678 LSKQRVEYALQHIKESCATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQK 730 (933)
Q Consensus 678 Ly~qRve~Ild~L~~~~g~rVLDIGCGt--G~fL~~LAr~g~~f~~VtGVDIS~e 730 (933)
-|+.|++ +.+......+|.=||+|. |.+...|.+.+ .+|+++|.++.
T Consensus 22 ~~~~~~~---~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G---~~V~~~d~~~~ 70 (304)
T PLN02256 22 DYESRLQ---EELEKSRKLKIGIVGFGNFGQFLAKTFVKQG---HTVLATSRSDY 70 (304)
T ss_pred ChHhHHh---HhhccCCCCEEEEEeeCHHHHHHHHHHHhCC---CEEEEEECccH
Confidence 3555543 334444667899999984 44666676665 58999999863
No 428
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=26.30 E-value=2.6e+02 Score=27.14 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=29.7
Q ss_pred CCCCEEEEEcCCc--ChHHHHHhcCCCCCceEEEEeCChHHHHHHHHH
Q 002345 693 SCATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI 738 (933)
Q Consensus 693 ~~g~rVLDIGCGt--G~fL~~LAr~g~~f~~VtGVDIS~emLe~Arkr 738 (933)
..+.+|+-+|||. ......|++.+ ...|+.+|.+++.++...+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g--~~~v~v~~r~~~~~~~~~~~ 62 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELG--AAKIVIVNRTLEKAKALAER 62 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEcCCHHHHHHHHHH
Confidence 3568999999973 23445555553 26899999998766554443
No 429
>PRK06196 oxidoreductase; Provisional
Probab=26.22 E-value=2.4e+02 Score=30.98 Aligned_cols=72 Identities=14% Similarity=-0.002 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.+++||=.|++.|. +...|++.| .+|++++.+++.++.+.+.+ ..+.++.+|+.+..
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G---~~Vv~~~R~~~~~~~~~~~l-----------------~~v~~~~~Dl~d~~ 84 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAG---AHVIVPARRPDVAREALAGI-----------------DGVEVVMLDLADLE 84 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHh-----------------hhCeEEEccCCCHH
Confidence 46789999976543 345666676 68999999877665443322 13678888887653
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+..|+++.+.-+
T Consensus 85 ~v~~~~~~~~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 85 SVRAFAERFLDSGRRIDILINNAGV 109 (315)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCC
Confidence 1 12568999886543
No 430
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=26.07 E-value=3.1e+02 Score=29.89 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=24.6
Q ss_pred EEEEEcCCcCh--HHHHHhcCCCCCceEEEEeCChHHHHHH
Q 002345 697 TLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRA 735 (933)
Q Consensus 697 rVLDIGCGtG~--fL~~LAr~g~~f~~VtGVDIS~emLe~A 735 (933)
+|+=||+|... +...|++.+ .+|+.++. ++.++..
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g---~~V~~~~r-~~~~~~~ 38 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAG---RDVTFLVR-PKRAKAL 38 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCC---CceEEEec-HHHHHHH
Confidence 57889999533 455667766 68999998 6555544
No 431
>PRK07478 short chain dehydrogenase; Provisional
Probab=25.74 E-value=3.3e+02 Score=28.46 Aligned_cols=76 Identities=20% Similarity=0.132 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.| .+|+.++.+++.++...+.+.. ...++.++.+|+.+.+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 68 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREG---AKVVVGARRQAELDQLVAEIRA-------------EGGEAVALAGDVRDEA 68 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCcEEEEEcCCCCHH
Confidence 45688988887553 456777777 6899999988777665544431 1235778888887643
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+..|+++.+..+
T Consensus 69 ~~~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 69 YAKALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 1 12478999876643
No 432
>PRK08507 prephenate dehydrogenase; Validated
Probab=25.38 E-value=2.7e+02 Score=30.32 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=27.8
Q ss_pred EEEEEcCCc--ChHHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 002345 697 TLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAA 736 (933)
Q Consensus 697 rVLDIGCGt--G~fL~~LAr~g~~f~~VtGVDIS~emLe~Ar 736 (933)
+|.=||+|. |.+...|.+.+ ...+|+++|.+++.++.++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g-~~~~v~~~d~~~~~~~~~~ 42 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKG-LISKVYGYDHNELHLKKAL 42 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcC-CCCEEEEEcCCHHHHHHHH
Confidence 466788885 45666777665 1247999999998877664
No 433
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=25.38 E-value=3.2e+02 Score=28.87 Aligned_cols=76 Identities=17% Similarity=0.027 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|-.|++.|. +...|++.| .+|+.++-+++.++...+.+.. ...++.++.+|+.+..
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G---~~vv~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~Dl~~~~ 72 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAG---ATIVFNDINQELVDKGLAAYRE-------------LGIEAHGYVCDVTDED 72 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHh-------------cCCceEEEEcCCCCHH
Confidence 56789999987654 456777777 6899999988777665544431 1235788889987643
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+..|+++.+..+
T Consensus 73 ~~~~~~~~~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 73 GVQAMVSQIEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCC
Confidence 1 12468999976644
No 434
>PRK05876 short chain dehydrogenase; Provisional
Probab=25.37 E-value=3.5e+02 Score=29.24 Aligned_cols=76 Identities=14% Similarity=0.019 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.| .+|+.+|.++..++...+.+.. ...++.++..|+.+..
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G---~~Vv~~~r~~~~l~~~~~~l~~-------------~~~~~~~~~~Dv~d~~ 68 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRG---ARVVLGDVDKPGLRQAVNHLRA-------------EGFDVHGVMCDVRHRE 68 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCeEEEEeCCCCCHH
Confidence 56789988887653 446677777 6899999998777655444321 1235778888987643
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+..|+++.+.-+
T Consensus 69 ~v~~~~~~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 69 EVTHLADEAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 1 12468999886654
No 435
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=24.97 E-value=5.6e+02 Score=31.11 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=34.3
Q ss_pred CCCEEEEEcCCcC--hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhh
Q 002345 694 CATTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK 742 (933)
Q Consensus 694 ~g~rVLDIGCGtG--~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ 742 (933)
+..+|-=||+|+- .+...+++.| ..|+.+|.+++.++.+.+++...
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG---~~V~l~d~~~e~l~~~~~~i~~~ 51 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAG---HQVLLYDIRAEALARAIAGIEAR 51 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHH
Confidence 3457888999853 2455667776 79999999999999887665543
No 436
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=24.77 E-value=4.1e+02 Score=27.51 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=56.7
Q ss_pred EcCCcChHHHHHhcCCCCCceEEEEeCC--hHHHHHHH---HHHhhhhhcccccCCCCCCCccEEEEE-cCccccCC---
Q 002345 701 FGCGSGSLLDSLLDYPTALEKIVGVDIS--QKSLSRAA---KIIHSKLSKKLDAAVPCTDVKSAVLFD-GSITVFDS--- 771 (933)
Q Consensus 701 IGCGtG~fL~~LAr~g~~f~~VtGVDIS--~emLe~Ar---krL~a~ls~~~~~~~Pr~~~~nVefi~-GDaedLp~--- 771 (933)
||=|+-.|+..|++..+....+++.-.+ ++.++... .++... ...++.+.. -|++.+..
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L------------~~~g~~V~~~VDat~l~~~~~ 70 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEEL------------RELGVTVLHGVDATKLHKHFR 70 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHH------------hhcCCccccCCCCCccccccc
Confidence 5656666777888764323456655443 33333332 333221 112333333 37776654
Q ss_pred -CCCCccEEEEccccccCC-------------hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 772 -RLHGFDIGTCLEVIEHME-------------EDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 772 -~~~sFDlVVc~eVLEHLp-------------dD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
....||.|+.+. -|+. ..-+..|.+.+..+|+++ .+.|+.-+
T Consensus 71 ~~~~~FDrIiFNF--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 71 LKNQRFDRIIFNF--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred ccCCcCCEEEEeC--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 347899999864 3444 123345666789999997 77766554
No 437
>PRK08251 short chain dehydrogenase; Provisional
Probab=24.70 E-value=3.7e+02 Score=27.87 Aligned_cols=77 Identities=12% Similarity=0.037 Sum_probs=48.6
Q ss_pred CCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 695 ATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 695 g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
++++|=.|+..|. ++..|++.+ .+|+.++.++..++.....+.. .....++.++.+|+.+...
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g---~~v~~~~r~~~~~~~~~~~~~~-----------~~~~~~~~~~~~D~~~~~~ 67 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG---RDLALCARRTDRLEELKAELLA-----------RYPGIKVAVAALDVNDHDQ 67 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHh-----------hCCCceEEEEEcCCCCHHH
Confidence 3578888865432 345566666 6899999988777655444321 1112368889999987531
Q ss_pred ----------CCCCccEEEEcccc
Q 002345 772 ----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 772 ----------~~~sFDlVVc~eVL 785 (933)
..+..|+|+.+..+
T Consensus 68 ~~~~~~~~~~~~~~id~vi~~ag~ 91 (248)
T PRK08251 68 VFEVFAEFRDELGGLDRVIVNAGI 91 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 23468988876543
No 438
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=24.54 E-value=5.1e+02 Score=28.07 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=26.3
Q ss_pred EEEEEcCCc-Ch-HHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 002345 697 TLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAA 736 (933)
Q Consensus 697 rVLDIGCGt-G~-fL~~LAr~g~~f~~VtGVDIS~emLe~Ar 736 (933)
+|+=||+|. |. +...|++.| .+|+.+|.+++.++..+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g---~~V~~~~r~~~~~~~~~ 40 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG---HDVTLVARRGAHLDALN 40 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC---CeEEEEECChHHHHHHH
Confidence 578899985 33 455666666 68999998776665553
No 439
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.46 E-value=1.6e+02 Score=32.35 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=31.5
Q ss_pred CEEEEEcCCcCh--HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002345 696 TTLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 740 (933)
Q Consensus 696 ~rVLDIGCGtG~--fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~ 740 (933)
.+|.=||+|.-. +...+++.| .+|+.+|.+++.++.+.+++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~ 48 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG---YDVLLNDVSADRLEAGLATIN 48 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHH
Confidence 568889998533 456667776 689999999999888765443
No 440
>PLN02253 xanthoxin dehydrogenase
Probab=24.35 E-value=2.8e+02 Score=29.56 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=47.3
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.| .+|+.+|.++...+...+.+. ...++.++.+|+.+..
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G---~~v~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~Dl~d~~ 79 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHG---AKVCIVDLQDDLGQNVCDSLG--------------GEPNVCFFHCDVTVED 79 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhc--------------CCCceEEEEeecCCHH
Confidence 46789988865432 345566776 789999988766554433221 1236788899987643
Q ss_pred C----------CCCCccEEEEccc
Q 002345 771 S----------RLHGFDIGTCLEV 784 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eV 784 (933)
. ..+..|+++.+..
T Consensus 80 ~~~~~~~~~~~~~g~id~li~~Ag 103 (280)
T PLN02253 80 DVSRAVDFTVDKFGTLDIMVNNAG 103 (280)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCC
Confidence 2 1246899987654
No 441
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=24.34 E-value=2e+02 Score=34.04 Aligned_cols=95 Identities=18% Similarity=0.250 Sum_probs=59.4
Q ss_pred CEEEEEcCC-cChHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--
Q 002345 696 TTLVDFGCG-SGSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 771 (933)
Q Consensus 696 ~rVLDIGCG-tG~fL-~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~-- 771 (933)
++||=|||| -|... ..|++.+. .+|+..|-|.+.++.+.... ..+++..+-|+.+.+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d--~~V~iAdRs~~~~~~i~~~~----------------~~~v~~~~vD~~d~~al~ 63 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD--GEVTIADRSKEKCARIAELI----------------GGKVEALQVDAADVDALV 63 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHhhc----------------cccceeEEecccChHHHH
Confidence 478999997 35543 44566653 79999999988887775432 2367888888877532
Q ss_pred -CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCC
Q 002345 772 -RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 816 (933)
Q Consensus 772 -~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~ 816 (933)
-...+|+|+...-- |+. . ..+...++-|.-++.|-+.
T Consensus 64 ~li~~~d~VIn~~p~-~~~----~---~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 64 ALIKDFDLVINAAPP-FVD----L---TILKACIKTGVDYVDTSYY 101 (389)
T ss_pred HHHhcCCEEEEeCCc-hhh----H---HHHHHHHHhCCCEEEcccC
Confidence 24567888875322 121 1 1244566677555555543
No 442
>PRK07063 short chain dehydrogenase; Provisional
Probab=24.30 E-value=3.3e+02 Score=28.57 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|-.|++.|. +...|++.| .+|+.+|.+++.++...+.+.. .....++.++.+|+.+..
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G---~~vv~~~r~~~~~~~~~~~~~~-----------~~~~~~~~~~~~Dl~~~~ 71 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREG---AAVALADLDAALAERAAAAIAR-----------DVAGARVLAVPADVTDAA 71 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-----------ccCCceEEEEEccCCCHH
Confidence 56789999987553 456677777 6899999988877766555431 011236788899987643
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+.+|+++.+.-+
T Consensus 72 ~~~~~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 72 SVAAAVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCc
Confidence 1 12468998876543
No 443
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=24.24 E-value=2.3e+02 Score=29.37 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=41.7
Q ss_pred cccCCchHHHHHHHHHHHhhcCCCCEEEEEcCCc--Ch-HHHHHhcCCCCCceEEEEeCCh
Q 002345 672 ALFSPPLSKQRVEYALQHIKESCATTLVDFGCGS--GS-LLDSLLDYPTALEKIVGVDISQ 729 (933)
Q Consensus 672 ~~F~PPLy~qRve~Ild~L~~~~g~rVLDIGCGt--G~-fL~~LAr~g~~f~~VtGVDIS~ 729 (933)
..|.|.....-++.+.+......+++||=||.|. |. ....|.+.+ .+|+.++-..
T Consensus 21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g---~~V~v~~r~~ 78 (168)
T cd01080 21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRN---ATVTVCHSKT 78 (168)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCC---CEEEEEECCc
Confidence 4577888888777776666667889999999995 77 566776766 5788888654
No 444
>PRK05872 short chain dehydrogenase; Provisional
Probab=24.23 E-value=3e+02 Score=30.04 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.+++||-.|++.|. +...|++.| .+|+.++.+++.++...+.+. ....+..+.+|+.+..
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~l~~~~~~l~--------------~~~~~~~~~~Dv~d~~ 70 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARG---AKLALVDLEEAELAALAAELG--------------GDDRVLTVVADVTDLA 70 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhc--------------CCCcEEEEEecCCCHH
Confidence 56789999976653 445667777 689999999887765544321 1124556667877642
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+..|+++.+.-+
T Consensus 71 ~v~~~~~~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 71 AMQAAAEEAVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 1 12578999987654
No 445
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=24.08 E-value=2.3e+02 Score=33.65 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=28.8
Q ss_pred CCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHH
Q 002345 693 SCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRA 735 (933)
Q Consensus 693 ~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~A 735 (933)
..+++|+=+|+|. |......++..+ .+|+++|.++.....|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~G--a~ViV~d~dp~r~~~A 234 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMG--ARVIVTEVDPIRALEA 234 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCc--CEEEEEeCChhhHHHH
Confidence 4688999999995 555555555433 6899999988644333
No 446
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=24.01 E-value=1.9e+02 Score=27.99 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=47.7
Q ss_pred EEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCC--hHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 697 TLVDFGCGSGS---LLDSLLDYPTALEKIVGVDIS--QKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 697 rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS--~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
++|=+|++.|. +...|++.++ ..|+.+.-+ .+.++...+.+.. ...++.+++.|+.+...
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~--~~v~~~~r~~~~~~~~~l~~~l~~-------------~~~~~~~~~~D~~~~~~ 66 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGA--RVVILTSRSEDSEGAQELIQELKA-------------PGAKITFIECDLSDPES 66 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTT--EEEEEEESSCHHHHHHHHHHHHHH-------------TTSEEEEEESETTSHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCc--eEEEEeeecccccccccccccccc-------------ccccccccccccccccc
Confidence 67888887664 5567777753 688899988 4555544444431 12588999999876421
Q ss_pred ----------CCCCccEEEEccc
Q 002345 772 ----------RLHGFDIGTCLEV 784 (933)
Q Consensus 772 ----------~~~sFDlVVc~eV 784 (933)
....+|+++++..
T Consensus 67 ~~~~~~~~~~~~~~ld~li~~ag 89 (167)
T PF00106_consen 67 IRALIEEVIKRFGPLDILINNAG 89 (167)
T ss_dssp HHHHHHHHHHHHSSESEEEEECS
T ss_pred ccccccccccccccccccccccc
Confidence 2357888886543
No 447
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=23.99 E-value=2.2e+02 Score=32.53 Aligned_cols=88 Identities=14% Similarity=0.208 Sum_probs=53.4
Q ss_pred CCCCEEEEEcCCc-Ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 693 SCATTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 693 ~~g~rVLDIGCGt-G~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
..+++|.=||+|. |. +...|...| .+|++.|.++...... +. ...++.+
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~G---~~V~~~d~~~~~~~~~-----------------------~~-~~~~l~e-- 194 (330)
T PRK12480 144 VKNMTVAIIGTGRIGAATAKIYAGFG---ATITAYDAYPNKDLDF-----------------------LT-YKDSVKE-- 194 (330)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCC---CEEEEEeCChhHhhhh-----------------------hh-ccCCHHH--
Confidence 3677999999996 54 455666665 7999999987432110 00 0112211
Q ss_pred CCCCCccEEEEccccccCCh--hHHHHHHHHHHHccCCCEEEEEecC
Q 002345 771 SRLHGFDIGTCLEVIEHMEE--DEASQFGNIVLSSFRPRILIVSTPN 815 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLpd--D~l~aL~eeI~rlLKPG~LIITTPN 815 (933)
.....|+|+. |+|. +....+.+.++..++||.++|.+-.
T Consensus 195 -ll~~aDiVil-----~lP~t~~t~~li~~~~l~~mk~gavlIN~aR 235 (330)
T PRK12480 195 -AIKDADIISL-----HVPANKESYHLFDKAMFDHVKKGAILVNAAR 235 (330)
T ss_pred -HHhcCCEEEE-----eCCCcHHHHHHHhHHHHhcCCCCcEEEEcCC
Confidence 2345677765 4442 2245566678899999977776643
No 448
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=23.81 E-value=89 Score=38.90 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCCh
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQ 729 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~ 729 (933)
++..|||+||..|.++...++..+.-.-|+|||+-+
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 567899999999999998887654446799999866
No 449
>PRK07102 short chain dehydrogenase; Provisional
Probab=23.72 E-value=2.7e+02 Score=28.97 Aligned_cols=73 Identities=12% Similarity=-0.041 Sum_probs=46.0
Q ss_pred CEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002345 696 TTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 771 (933)
Q Consensus 696 ~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~- 771 (933)
++||-.|+..|. +...|++.| .+|+++|.+++.++...+.+.. ....++.++++|+.+...
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G---~~Vi~~~r~~~~~~~~~~~~~~------------~~~~~~~~~~~Dl~~~~~~ 66 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAG---ARLYLAARDVERLERLADDLRA------------RGAVAVSTHELDILDTASH 66 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHH------------hcCCeEEEEecCCCChHHH
Confidence 468888865432 345666676 6899999998766544333321 122378899999886432
Q ss_pred ------CCCCccEEEEcc
Q 002345 772 ------RLHGFDIGTCLE 783 (933)
Q Consensus 772 ------~~~sFDlVVc~e 783 (933)
....+|+++...
T Consensus 67 ~~~~~~~~~~~d~vv~~a 84 (243)
T PRK07102 67 AAFLDSLPALPDIVLIAV 84 (243)
T ss_pred HHHHHHHhhcCCEEEECC
Confidence 123479888653
No 450
>PRK07814 short chain dehydrogenase; Provisional
Probab=23.69 E-value=2.9e+02 Score=29.21 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|.+.|. +...|+++| .+|++++.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G---~~Vi~~~r~~~~~~~~~~~l~~-------------~~~~~~~~~~D~~~~~ 72 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAG---ADVLIAARTESQLDEVAEQIRA-------------AGRRAHVVAADLAHPE 72 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCcEEEEEccCCCHH
Confidence 46789999965432 345566676 6999999988766555443321 1235788889987653
Q ss_pred C----------CCCCccEEEEcc
Q 002345 771 S----------RLHGFDIGTCLE 783 (933)
Q Consensus 771 ~----------~~~sFDlVVc~e 783 (933)
. ..+.+|+|+...
T Consensus 73 ~~~~~~~~~~~~~~~id~vi~~A 95 (263)
T PRK07814 73 ATAGLAGQAVEAFGRLDIVVNNV 95 (263)
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 2 124689998754
No 451
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=23.63 E-value=2.1e+02 Score=30.13 Aligned_cols=34 Identities=26% Similarity=0.179 Sum_probs=26.6
Q ss_pred CCCCEEEEEcCC-cCh-HHHHHhcCCCCCceEEEEeCC
Q 002345 693 SCATTLVDFGCG-SGS-LLDSLLDYPTALEKIVGVDIS 728 (933)
Q Consensus 693 ~~g~rVLDIGCG-tG~-fL~~LAr~g~~f~~VtGVDIS 728 (933)
....+||=+||| .|. .+..|++.| +.+++-+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~G--v~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAG--VGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcC--CCeEEEecCC
Confidence 357789999999 355 567777776 4789999977
No 452
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=23.14 E-value=3.8e+02 Score=26.73 Aligned_cols=91 Identities=23% Similarity=0.328 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCc-Ch-HHHHHhcCCCCCceEEEEe-CChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVD-ISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGt-G~-fL~~LAr~g~~f~~VtGVD-IS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
...+|-=||+|. |. +...|.+.+ ..|.|+- .++...+.+...+. ...+. +..+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag---~~v~~v~srs~~sa~~a~~~~~-----------------~~~~~--~~~~-- 64 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAG---HEVVGVYSRSPASAERAAAFIG-----------------AGAIL--DLEE-- 64 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTT---SEEEEESSCHH-HHHHHHC--T-----------------T-------TTG--
T ss_pred CccEEEEECCCHHHHHHHHHHHHCC---CeEEEEEeCCcccccccccccc-----------------ccccc--cccc--
Confidence 345788999994 43 566777776 7899986 34434444433221 11111 2222
Q ss_pred CCCCCccEEEEccccccCChhHHHHHHHHHHHc--cCCCEEEEEec
Q 002345 771 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSS--FRPRILIVSTP 814 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rl--LKPG~LIITTP 814 (933)
.....|+++.. ++++....+.+++... ++||.+++-|-
T Consensus 65 -~~~~aDlv~ia-----vpDdaI~~va~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 65 -ILRDADLVFIA-----VPDDAIAEVAEQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp -GGCC-SEEEE------S-CCHHHHHHHHHHCC--S-TT-EEEES-
T ss_pred -ccccCCEEEEE-----echHHHHHHHHHHHHhccCCCCcEEEECC
Confidence 23468888875 6667666666667766 78896666544
No 453
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=23.09 E-value=3e+02 Score=29.04 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.| .+|+.+|.+++.++...+.+ ..++.++.+|+.+..
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~D~~~~~ 65 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEG---ARVAVLERSAEKLASLRQRF----------------GDHVLVVEGDVTSYA 65 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHh----------------CCcceEEEccCCCHH
Confidence 46789999986543 445677777 68999999887665543321 124677888887643
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+..|+++.+--+
T Consensus 66 ~~~~~~~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 66 DNQRAVDQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 1 12468988876543
No 454
>PRK08643 acetoin reductase; Validated
Probab=23.07 E-value=3.8e+02 Score=27.99 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=47.8
Q ss_pred CCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 695 ATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 695 g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
++++|=.|+..|. +...|++.| .+|+.+|.+++.++.....+.. ...++.++.+|+.+...
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~Dl~~~~~ 65 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDG---FKVAIVDYNEETAQAAADKLSK-------------DGGKAIAVKADVSDRDQ 65 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCeEEEEECCCCCHHH
Confidence 3567877866542 445666776 6899999988776665444321 12357788899876531
Q ss_pred ----------CCCCccEEEEccc
Q 002345 772 ----------RLHGFDIGTCLEV 784 (933)
Q Consensus 772 ----------~~~sFDlVVc~eV 784 (933)
..+..|+++.+.-
T Consensus 66 ~~~~~~~~~~~~~~id~vi~~ag 88 (256)
T PRK08643 66 VFAAVRQVVDTFGDLNVVVNNAG 88 (256)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 1246899887653
No 455
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=23.02 E-value=3.7e+02 Score=27.98 Aligned_cols=78 Identities=22% Similarity=0.141 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCc--Ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGS--GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGt--G~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|+.. |. +...|++.| .+|+.++.++..++.+.+.+.. ...++.++++|+.+..
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~Dl~~~~ 69 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAG---AAVAIADLNQDGANAVADEINK-------------AGGKAIGVAMDVTNED 69 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CeEEEEeCChHHHHHHHHHHHh-------------cCceEEEEECCCCCHH
Confidence 467888887743 32 445677777 6899999998777666555431 1235788899987643
Q ss_pred C----------CCCCccEEEEcccccc
Q 002345 771 S----------RLHGFDIGTCLEVIEH 787 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVLEH 787 (933)
. ..+..|+|+.....-+
T Consensus 70 ~~~~~~~~~~~~~~~~d~vi~~ag~~~ 96 (262)
T PRK13394 70 AVNAGIDKVAERFGSVDILVSNAGIQI 96 (262)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCccCC
Confidence 2 1245898887665433
No 456
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=22.86 E-value=2.7e+02 Score=32.46 Aligned_cols=100 Identities=11% Similarity=0.126 Sum_probs=66.4
Q ss_pred CCEEEEEcCC-cChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 695 ATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 695 g~rVLDIGCG-tG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
+.+|.=||-| .|.....++--.+ ..|+-+|+|.+-|+.-.... ..++..+.....++...-
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~ldd~f----------------~~rv~~~~st~~~iee~v 229 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQLDDLF----------------GGRVHTLYSTPSNIEEAV 229 (371)
T ss_pred CccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhhhhHhh----------------CceeEEEEcCHHHHHHHh
Confidence 4578889988 4666655554333 79999999988776654332 125667766666665566
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEec
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 814 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTP 814 (933)
...|+|+..-.+---. .+. ...+++...+|||.++|.+-
T Consensus 230 ~~aDlvIgaVLIpgak-aPk-Lvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 230 KKADLVIGAVLIPGAK-APK-LVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred hhccEEEEEEEecCCC-Cce-ehhHHHHHhcCCCcEEEEEE
Confidence 7899999875554444 332 33456899999996666543
No 457
>PRK07831 short chain dehydrogenase; Provisional
Probab=22.77 E-value=3.4e+02 Score=28.61 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=50.7
Q ss_pred CCCEEEEEcC-C--cCh-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 694 CATTLVDFGC-G--SGS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 694 ~g~rVLDIGC-G--tG~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
.++++|=.|. | -|. +...|++.| .+|+.+|.+++.++...+.+... .+..++.++.+|+.+.
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G---~~V~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~Dl~~~ 81 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEG---ARVVISDIHERRLGETADELAAE-----------LGLGRVEAVVCDVTSE 81 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHh-----------cCCceEEEEEccCCCH
Confidence 4578898986 3 344 445667777 67999999887777665544310 1223578888998764
Q ss_pred CC----------CCCCccEEEEcccc
Q 002345 770 DS----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 770 p~----------~~~sFDlVVc~eVL 785 (933)
.. ..+..|+++.+..+
T Consensus 82 ~~~~~~~~~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 82 AQVDALIDAAVERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 21 12468998887654
No 458
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=22.74 E-value=2.1e+02 Score=30.85 Aligned_cols=44 Identities=20% Similarity=0.229 Sum_probs=33.8
Q ss_pred cCCCCEEEEEcCC-cChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 692 ESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 692 ~~~g~rVLDIGCG-tG~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
...+.+||..|+| .|..+..+++..+ .+|++++.+++..+.+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH
Confidence 4467789988887 4777777777543 679999999998888754
No 459
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=22.70 E-value=1.9e+02 Score=32.52 Aligned_cols=93 Identities=16% Similarity=0.143 Sum_probs=54.7
Q ss_pred CEEEEEcCC--cChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 696 TTLVDFGCG--SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 696 ~rVLDIGCG--tG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
.+|+=+|.| -|.+.+.|.+.| ....++|.|.+...++.+... .+.....+.. .....
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g-~~v~i~g~d~~~~~~~~a~~l-------------------gv~d~~~~~~-~~~~~ 62 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAG-LVVRIIGRDRSAATLKAALEL-------------------GVIDELTVAG-LAEAA 62 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcC-CeEEEEeecCcHHHHHHHhhc-------------------Ccccccccch-hhhhc
Confidence 578889988 356777777776 345689999999888877532 1111100000 01123
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEec
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 814 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTP 814 (933)
...|+|+..-=++.. ..+.+++...|+||.++..+-
T Consensus 63 ~~aD~VivavPi~~~-----~~~l~~l~~~l~~g~iv~Dv~ 98 (279)
T COG0287 63 AEADLVIVAVPIEAT-----EEVLKELAPHLKKGAIVTDVG 98 (279)
T ss_pred ccCCEEEEeccHHHH-----HHHHHHhcccCCCCCEEEecc
Confidence 457888876433333 344455677888886655443
No 460
>PRK07024 short chain dehydrogenase; Provisional
Probab=22.57 E-value=3.5e+02 Score=28.46 Aligned_cols=73 Identities=14% Similarity=0.018 Sum_probs=47.3
Q ss_pred CEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002345 696 TTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 771 (933)
Q Consensus 696 ~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~- 771 (933)
++||=.|++.|. +...|++.| .+|+.+|.+++.++...+.+. . . .++.++.+|+.+...
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G---~~v~~~~r~~~~~~~~~~~~~------------~-~-~~~~~~~~Dl~~~~~i 65 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQG---ATLGLVARRTDALQAFAARLP------------K-A-ARVSVYAADVRDADAL 65 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHhcc------------c-C-CeeEEEEcCCCCHHHH
Confidence 467888875543 445667776 689999998876655433221 1 1 168889999976431
Q ss_pred ---------CCCCccEEEEcccc
Q 002345 772 ---------RLHGFDIGTCLEVI 785 (933)
Q Consensus 772 ---------~~~sFDlVVc~eVL 785 (933)
..+..|+++.+..+
T Consensus 66 ~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 66 AAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHHHhCCCCCEEEECCCc
Confidence 12457999987644
No 461
>PRK08324 short chain dehydrogenase; Validated
Probab=22.52 E-value=5.3e+02 Score=32.14 Aligned_cols=74 Identities=16% Similarity=0.109 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCcC--h-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSG--S-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG--~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.+++||=.|++.| . +...|++.| .+|+.+|.++..++.+.+.+.. . .++.++.+|+.+..
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~G---a~Vvl~~r~~~~~~~~~~~l~~-------------~-~~v~~v~~Dvtd~~ 483 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEG---ACVVLADLDEEAAEAAAAELGG-------------P-DRALGVACDVTDEA 483 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCc---CEEEEEeCCHHHHHHHHHHHhc-------------c-CcEEEEEecCCCHH
Confidence 5688999997443 3 445666676 6899999998877666544321 1 36788888887643
Q ss_pred C----------CCCCccEEEEccc
Q 002345 771 S----------RLHGFDIGTCLEV 784 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eV 784 (933)
. ..+.+|+|+.+.-
T Consensus 484 ~v~~~~~~~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 484 AVQAAFEEAALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 1 1246899987664
No 462
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=22.51 E-value=2.5e+02 Score=28.87 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=33.4
Q ss_pred CCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 693 SCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 693 ~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
.++.+||..|+|. |..+..+++..+ .+|++++.+++..+.+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH
Confidence 5678999999995 666666776543 789999999887777643
No 463
>PRK05867 short chain dehydrogenase; Provisional
Probab=22.09 E-value=3.5e+02 Score=28.31 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.| .+|+.++.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~-------------~~~~~~~~~~D~~~~~ 71 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAG---AQVAIAARHLDALEKLADEIGT-------------SGGKVVPVCCDVSQHQ 71 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHh-------------cCCeEEEEEccCCCHH
Confidence 56789999987653 456777777 6899999998777665544431 1135778888887643
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+..|+++.+..+
T Consensus 72 ~~~~~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 72 QVTSMLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 1 12578999976544
No 464
>PTZ00357 methyltransferase; Provisional
Probab=22.06 E-value=1.7e+02 Score=37.15 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=57.0
Q ss_pred EEEEEcCCcChHHHHHhcCC---CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC------CccEEEEEcCcc
Q 002345 697 TLVDFGCGSGSLLDSLLDYP---TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD------VKSAVLFDGSIT 767 (933)
Q Consensus 697 rVLDIGCGtG~fL~~LAr~g---~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~------~~nVefi~GDae 767 (933)
.|+=+|+|.|-+.....+.. +-..+|++|+-++..+...+.+.... +... ...|+++..|+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~---------eeW~n~~~~~G~~VtII~sDMR 773 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWAND---------PEWTQLAYTFGHTLEVIVADGR 773 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcc---------cccccccccCCCeEEEEeCccc
Confidence 58999999999876544321 12358999999966443443332110 0111 236999999999
Q ss_pred ccCCCC-----------CCccEEEEccccccCChhHH-HHHHHHHHHccCC
Q 002345 768 VFDSRL-----------HGFDIGTCLEVIEHMEEDEA-SQFGNIVLSSFRP 806 (933)
Q Consensus 768 dLp~~~-----------~sFDlVVc~eVLEHLpdD~l-~aL~eeI~rlLKP 806 (933)
++..+. +.+|+||+ +.|--+.+.++ ..-++-+.+.||+
T Consensus 774 ~W~~pe~~~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 774 TIATAAENGSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred ccccccccccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhh
Confidence 875321 36899887 33333433332 0111235556664
No 465
>PRK01490 tig trigger factor; Provisional
Probab=22.01 E-value=1.3e+02 Score=35.28 Aligned_cols=62 Identities=27% Similarity=0.455 Sum_probs=51.5
Q ss_pred CCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccccccCCc
Q 002345 580 PSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPP 645 (933)
Q Consensus 580 p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~r~lP~ 645 (933)
+..|..|.|+|..++ +|+.+... ..+.|.|.+|.+.|...++--+.-|.+|....+....|.
T Consensus 158 ~~~gD~V~vd~~~~~--~g~~~~~~--~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~ 219 (435)
T PRK01490 158 AENGDRVTIDFVGSI--DGEEFEGG--KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPE 219 (435)
T ss_pred CCCCCEEEEEEEEEE--CCEECcCC--CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcc
Confidence 489999999999997 68765542 457899999999999999988999999998877765554
No 466
>PRK07904 short chain dehydrogenase; Provisional
Probab=21.90 E-value=2.9e+02 Score=29.42 Aligned_cols=76 Identities=14% Similarity=0.116 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHH-HHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKS-LSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~em-Le~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
.+++||-.|++.|. +...|++.++ .+|+.++-+++. ++.+.+.+.. .+..++.++.+|+.+.
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg--~~V~~~~r~~~~~~~~~~~~l~~------------~~~~~v~~~~~D~~~~ 72 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAP--ARVVLAALPDDPRRDAAVAQMKA------------AGASSVEVIDFDALDT 72 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCC--CeEEEEeCCcchhHHHHHHHHHh------------cCCCceEEEEecCCCh
Confidence 46789999996553 3445556643 689999887764 5555444331 1223688888998764
Q ss_pred CC---------CCCCccEEEEcc
Q 002345 770 DS---------RLHGFDIGTCLE 783 (933)
Q Consensus 770 p~---------~~~sFDlVVc~e 783 (933)
.. ..+..|+++...
T Consensus 73 ~~~~~~~~~~~~~g~id~li~~a 95 (253)
T PRK07904 73 DSHPKVIDAAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHHHHHHHHHhcCCCCEEEEee
Confidence 31 124789877543
No 467
>PRK07677 short chain dehydrogenase; Provisional
Probab=21.87 E-value=3.6e+02 Score=28.23 Aligned_cols=72 Identities=11% Similarity=0.061 Sum_probs=47.9
Q ss_pred CEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002345 696 TTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 771 (933)
Q Consensus 696 ~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~- 771 (933)
+++|-.|++.|. +...|++.| .+|+++|.++..++...+.+.. ...++.++.+|+.+...
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G---~~Vi~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~~~ 65 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEG---ANVVITGRTKEKLEEAKLEIEQ-------------FPGQVLTVQMDVRNPEDV 65 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCcEEEEEecCCCHHHH
Confidence 578888987653 455667777 6899999988766655444321 12367888889876321
Q ss_pred ---------CCCCccEEEEcc
Q 002345 772 ---------RLHGFDIGTCLE 783 (933)
Q Consensus 772 ---------~~~sFDlVVc~e 783 (933)
..+..|+++.+.
T Consensus 66 ~~~~~~~~~~~~~id~lI~~a 86 (252)
T PRK07677 66 QKMVEQIDEKFGRIDALINNA 86 (252)
T ss_pred HHHHHHHHHHhCCccEEEECC
Confidence 124689988764
No 468
>PRK09072 short chain dehydrogenase; Provisional
Probab=21.68 E-value=3.7e+02 Score=28.35 Aligned_cols=77 Identities=13% Similarity=0.101 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
++.++|=.|++.|. +...|++.| .+|++++.+++.++...+.+. ...++.++.+|+.+..
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~--------------~~~~~~~~~~D~~d~~ 66 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAG---ARLLLVGRNAEKLEALAARLP--------------YPGRHRWVVADLTSEA 66 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHh--------------cCCceEEEEccCCCHH
Confidence 45678989877543 556677777 689999999877765544331 1236788888987643
Q ss_pred C---------CCCCccEEEEcccccc
Q 002345 771 S---------RLHGFDIGTCLEVIEH 787 (933)
Q Consensus 771 ~---------~~~sFDlVVc~eVLEH 787 (933)
. ..+..|+++......+
T Consensus 67 ~~~~~~~~~~~~~~id~lv~~ag~~~ 92 (263)
T PRK09072 67 GREAVLARAREMGGINVLINNAGVNH 92 (263)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 1 1246899988765433
No 469
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.58 E-value=3.7e+02 Score=27.59 Aligned_cols=73 Identities=14% Similarity=0.091 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.+++||-.|++.|. +...|++.| .+|++++-+++.++...+.+. ...++.++.+|+.+..
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~--------------~~~~~~~~~~Dl~~~~ 66 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEG---AQVCINSRNENKLKRMKKTLS--------------KYGNIHYVVGDVSSTE 66 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHH--------------hcCCeEEEECCCCCHH
Confidence 46789999986432 345566666 689999998876655533322 1125788889987643
Q ss_pred C----------CCCCccEEEEcc
Q 002345 771 S----------RLHGFDIGTCLE 783 (933)
Q Consensus 771 ~----------~~~sFDlVVc~e 783 (933)
. ..+..|.++...
T Consensus 67 ~~~~~~~~~~~~~~~id~ii~~a 89 (238)
T PRK05786 67 SARNVIEKAAKVLNAIDGLVVTV 89 (238)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcC
Confidence 1 123568777655
No 470
>PRK05650 short chain dehydrogenase; Provisional
Probab=21.40 E-value=2.8e+02 Score=29.39 Aligned_cols=73 Identities=10% Similarity=0.098 Sum_probs=47.2
Q ss_pred EEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--
Q 002345 697 TLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 771 (933)
Q Consensus 697 rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~-- 771 (933)
+||-.|+..|. +...|++.| .+|+.++.+.+.++.+.+.+.. ...++.++.+|+.+...
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g---~~V~~~~r~~~~~~~~~~~l~~-------------~~~~~~~~~~D~~~~~~~~ 65 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREG---WRLALADVNEEGGEETLKLLRE-------------AGGDGFYQRCDVRDYSQLT 65 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCceEEEEccCCCHHHHH
Confidence 57878875543 445667776 6899999988766655444321 12357788889876431
Q ss_pred --------CCCCccEEEEcccc
Q 002345 772 --------RLHGFDIGTCLEVI 785 (933)
Q Consensus 772 --------~~~sFDlVVc~eVL 785 (933)
....+|+++.+.-+
T Consensus 66 ~~~~~i~~~~~~id~lI~~ag~ 87 (270)
T PRK05650 66 ALAQACEEKWGGIDVIVNNAGV 87 (270)
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 12468999886543
No 471
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=21.14 E-value=1.9e+02 Score=35.58 Aligned_cols=76 Identities=24% Similarity=0.238 Sum_probs=45.9
Q ss_pred CCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCCCCC---CC-----CCChHHHHHHHHHHHhhhhcccc
Q 002345 51 PQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGIDPS---PN-----VPSAEEAWDKLIASVKHLFSNEF 122 (933)
Q Consensus 51 ~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~g~~~~---~~-----~~~~~e~~~~l~~~~~~~f~~~~ 122 (933)
||.+| -|.|...+-+- +.-+.=+.||.|.|.||..||+.|.-.-. +. .+++..--|++...+.--| +|.
T Consensus 113 ~~~~~-~F~~~~~vdg~-~~~~~~~sKk~ak~~aa~~al~~l~~~~~~~~~~~~~~~~e~~~~~~~~Ia~lv~~kF-~~L 189 (542)
T KOG2777|consen 113 PQHAP-KFVMSVVVDGR-WFEGGGRSKKEAKQEAAMAALQVLFKIDENPERPSEALTLENPSTLGDEIAELVLEKF-DEL 189 (542)
T ss_pred CCCCc-eEEEEEEECCE-EccCCCcchHHHHHHHHHHHHHHHHhccCCcccccccccccCCChHHHHHHHHHHHHH-HHH
Confidence 56564 78888777653 22333688999999999999999765322 21 1233333344444444445 555
Q ss_pred cccCCCc
Q 002345 123 LSSQSPL 129 (933)
Q Consensus 123 ~~~~~pl 129 (933)
.....|-
T Consensus 190 ~k~~kp~ 196 (542)
T KOG2777|consen 190 TKNGKPI 196 (542)
T ss_pred HhcCCCc
Confidence 5555554
No 472
>PRK06172 short chain dehydrogenase; Provisional
Probab=21.01 E-value=4.1e+02 Score=27.71 Aligned_cols=76 Identities=13% Similarity=0.035 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|-.|++.|. +...|++.| .+|+.++-+++.++...+.+.. ...++.++.+|+.+..
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 69 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREG---AKVVVADRDAAGGEETVALIRE-------------AGGEALFVACDVTRDA 69 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCceEEEEcCCCCHH
Confidence 46789999986543 445667776 6899999998776655444331 1235788899987642
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+.+|+|+.+...
T Consensus 70 ~i~~~~~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 70 EVKALVEQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 1 12467999986643
No 473
>PRK07576 short chain dehydrogenase; Provisional
Probab=20.84 E-value=4.4e+02 Score=28.04 Aligned_cols=75 Identities=11% Similarity=0.108 Sum_probs=47.1
Q ss_pred CCCCEEEEEcCCcC--h-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 693 SCATTLVDFGCGSG--S-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 693 ~~g~rVLDIGCGtG--~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
..++++|-.|.+.| . +...|++.| .+|+++|.+++.++...+.+.. ...++.++..|+.+.
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~Dv~~~ 70 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAG---ANVAVASRSQEKVDAAVAQLQQ-------------AGPEGLGVSADVRDY 70 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHH-------------hCCceEEEECCCCCH
Confidence 35678999986433 2 344566666 6899999988766555433321 112567788888753
Q ss_pred CC----------CCCCccEEEEcc
Q 002345 770 DS----------RLHGFDIGTCLE 783 (933)
Q Consensus 770 p~----------~~~sFDlVVc~e 783 (933)
.. ....+|+++++.
T Consensus 71 ~~i~~~~~~~~~~~~~iD~vi~~a 94 (264)
T PRK07576 71 AAVEAAFAQIADEFGPIDVLVSGA 94 (264)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 21 124689998754
No 474
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=20.70 E-value=3e+02 Score=29.72 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=41.5
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhh
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 741 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a 741 (933)
...+..|||.=+|+|..+....+.+ ...+|+|++++.++.+.+++..
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~---r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLG---RRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcC---CceEEEecCHHHHHHHHHHHHh
Confidence 4578899999999999998887777 6899999999999999998764
No 475
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=20.67 E-value=4.5e+02 Score=27.50 Aligned_cols=76 Identities=17% Similarity=0.117 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCcC--h-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSG--S-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG--~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.+++||=.|.+.| . +...|++.| .+|+++|.++..++...+.+.. ...++.++.+|+.+..
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~i~~-------------~~~~~~~~~~D~~~~~ 72 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAG---AEVILNGRDPAKLAAAAESLKG-------------QGLSAHALAFDVTDHD 72 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHh-------------cCceEEEEEccCCCHH
Confidence 5678999996432 2 334566666 6899999998776655444431 1235788888887642
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+..|+++.+...
T Consensus 73 ~~~~~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 73 AVRAAIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 1 13468998887654
No 476
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=20.61 E-value=4.3e+02 Score=27.63 Aligned_cols=76 Identities=12% Similarity=0.021 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.| .+|+.++.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~Dl~~~~ 73 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAG---AHVLVNGRNAATLEAAVAALRA-------------AGGAAEALAFDIADEE 73 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHh-------------cCCceEEEEccCCCHH
Confidence 57789999975443 344566676 6899999998776655444431 1225778888887642
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+.+|.++.+...
T Consensus 74 ~~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 74 AVAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 1 12467888876543
No 477
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=20.54 E-value=1.6e+02 Score=31.20 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=36.7
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 740 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~ 740 (933)
.+|.+.++.....+++|.=||+|..+..+.+.+ ..|+.-|+++..+...+..+.
T Consensus 10 ~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 10 KWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp HHHHHHS-S-S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHHHh
Confidence 456666664467899999999999998887654 789999999988877764443
No 478
>PRK06914 short chain dehydrogenase; Provisional
Probab=20.47 E-value=4e+02 Score=28.30 Aligned_cols=76 Identities=9% Similarity=-0.059 Sum_probs=46.8
Q ss_pred CCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 695 ATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 695 g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
++++|-.|++.|. +...|++.| .+|++++-+++.++...+.+.. .....++.++.+|+.+...
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~~~~~~D~~d~~~ 68 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKG---YLVIATMRNPEKQENLLSQATQ-----------LNLQQNIKVQQLDVTDQNS 68 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHHHHh-----------cCCCCceeEEecCCCCHHH
Confidence 4578888875432 345567776 7899999887666554333221 1112368889999877432
Q ss_pred ---------CCCCccEEEEccc
Q 002345 772 ---------RLHGFDIGTCLEV 784 (933)
Q Consensus 772 ---------~~~sFDlVVc~eV 784 (933)
..+..|.|+....
T Consensus 69 ~~~~~~~~~~~~~id~vv~~ag 90 (280)
T PRK06914 69 IHNFQLVLKEIGRIDLLVNNAG 90 (280)
T ss_pred HHHHHHHHHhcCCeeEEEECCc
Confidence 1246788887653
No 479
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=20.27 E-value=2.7e+02 Score=33.25 Aligned_cols=85 Identities=11% Similarity=0.062 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCc-ChHHHHHh-cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 694 CATTLVDFGCGS-GSLLDSLL-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 694 ~g~rVLDIGCGt-G~fL~~LA-r~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
.+++|+=+|+|. |..+...+ ..| .+|+.+|+++.....|... + ..+ .++.+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~G---a~ViV~d~dp~ra~~A~~~----------------G---~~v--~~l~ea-- 264 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLG---ARVIVTEVDPICALQAAMD----------------G---FRV--MTMEEA-- 264 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC---CEEEEEcCCchhhHHHHhc----------------C---CEe--cCHHHH--
Confidence 688999999994 44443333 444 6899999998654444210 1 111 122221
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
...+|+|+..- . . ...+....+..+|+|.+++.
T Consensus 265 -l~~aDVVI~aT-----G-~-~~vI~~~~~~~mK~GailiN 297 (425)
T PRK05476 265 -AELGDIFVTAT-----G-N-KDVITAEHMEAMKDGAILAN 297 (425)
T ss_pred -HhCCCEEEECC-----C-C-HHHHHHHHHhcCCCCCEEEE
Confidence 23689998753 1 1 12344457889999944443
No 480
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=20.24 E-value=3.9e+02 Score=28.41 Aligned_cols=75 Identities=16% Similarity=0.029 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.| .+|+.+|.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~Dl~~~~ 72 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAG---AKVAILDRNQEKAEAVVAEIKA-------------AGGEALAVKADVLDKE 72 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCeEEEEECCCCCHH
Confidence 46788988886543 445667777 6899999987766554443321 1225788889987643
Q ss_pred C----------CCCCccEEEEccc
Q 002345 771 S----------RLHGFDIGTCLEV 784 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eV 784 (933)
. ..+.+|+++.+..
T Consensus 73 ~v~~~~~~~~~~~g~id~li~~ag 96 (278)
T PRK08277 73 SLEQARQQILEDFGPCDILINGAG 96 (278)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 1 1247899987654
No 481
>PRK08589 short chain dehydrogenase; Validated
Probab=20.02 E-value=4.3e+02 Score=28.21 Aligned_cols=75 Identities=17% Similarity=0.120 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.| .+|+.++.+ +.++...+.+.. ...++.++..|+.+..
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G---~~vi~~~r~-~~~~~~~~~~~~-------------~~~~~~~~~~Dl~~~~ 67 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEG---AYVLAVDIA-EAVSETVDKIKS-------------NGGKAKAYHVDISDEQ 67 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCc-HHHHHHHHHHHh-------------cCCeEEEEEeecCCHH
Confidence 46789999987653 456677777 789999988 444443333321 1225778888887642
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+..|+++.+.-+
T Consensus 68 ~~~~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 68 QVKDFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHHHHHHHHHHcCCcCEEEECCCC
Confidence 1 12468998876543
Done!