Query 002345
Match_columns 933
No_of_seqs 441 out of 3580
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 22:32:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3htx_A HEN1; HEN1, small RNA m 100.0 1E-275 4E-280 2393.4 61.0 878 3-928 9-943 (950)
2 3jwg_A HEN1, methyltransferase 100.0 1.5E-27 5.1E-32 238.5 21.9 202 676-901 11-212 (219)
3 3jwh_A HEN1; methyltransferase 100.0 6.5E-27 2.2E-31 233.9 22.5 201 677-901 12-212 (217)
4 2p7i_A Hypothetical protein; p 99.7 5.9E-16 2E-20 154.8 17.4 168 682-881 29-201 (250)
5 1vl5_A Unknown conserved prote 99.7 3.6E-16 1.2E-20 160.3 15.8 159 682-874 25-184 (260)
6 3l8d_A Methyltransferase; stru 99.6 3.1E-15 1.1E-19 150.6 17.8 150 683-874 44-194 (242)
7 3ujc_A Phosphoethanolamine N-m 99.6 6.4E-16 2.2E-20 157.0 12.5 128 673-816 34-162 (266)
8 3h2b_A SAM-dependent methyltra 99.6 2.2E-15 7.5E-20 148.4 15.5 136 695-876 42-178 (203)
9 4gek_A TRNA (CMO5U34)-methyltr 99.6 2.8E-15 9.4E-20 157.7 16.7 129 675-816 49-181 (261)
10 3hnr_A Probable methyltransfer 99.6 5E-15 1.7E-19 147.3 17.5 163 684-878 35-199 (220)
11 3dtn_A Putative methyltransfer 99.6 4.5E-15 1.5E-19 149.3 17.0 173 677-874 26-208 (234)
12 1xxl_A YCGJ protein; structura 99.6 2.9E-15 9.8E-20 152.7 15.8 156 685-874 12-168 (239)
13 1nkv_A Hypothetical protein YJ 99.6 1.4E-15 4.9E-20 154.6 13.4 126 674-815 16-142 (256)
14 1xtp_A LMAJ004091AAA; SGPP, st 99.6 7.5E-15 2.6E-19 148.8 18.0 149 685-875 84-233 (254)
15 4htf_A S-adenosylmethionine-de 99.6 7.6E-15 2.6E-19 152.7 18.3 163 694-880 68-233 (285)
16 3ou2_A SAM-dependent methyltra 99.6 4.1E-15 1.4E-19 146.8 15.3 113 685-817 36-150 (218)
17 3e23_A Uncharacterized protein 99.6 8.4E-15 2.9E-19 145.4 16.1 132 694-874 43-176 (211)
18 3dh0_A SAM dependent methyltra 99.6 6.6E-15 2.3E-19 146.3 15.4 148 684-874 27-175 (219)
19 2ex4_A Adrenal gland protein A 99.6 1.7E-14 5.7E-19 146.6 18.3 141 694-875 79-220 (241)
20 3bus_A REBM, methyltransferase 99.6 1.2E-14 4.2E-19 149.4 17.4 119 682-815 49-168 (273)
21 3dli_A Methyltransferase; PSI- 99.6 7E-15 2.4E-19 149.3 15.3 135 694-874 41-178 (240)
22 1y8c_A S-adenosylmethionine-de 99.6 2E-14 6.9E-19 144.0 17.3 124 677-817 18-146 (246)
23 2xvm_A Tellurite resistance pr 99.6 1E-14 3.4E-19 142.0 14.3 114 685-814 23-137 (199)
24 1pjz_A Thiopurine S-methyltran 99.6 3.3E-15 1.1E-19 149.9 10.7 124 688-815 16-142 (203)
25 3g5l_A Putative S-adenosylmeth 99.6 1.2E-14 4.1E-19 148.1 14.7 114 684-816 34-148 (253)
26 2gb4_A Thiopurine S-methyltran 99.6 1.4E-14 4.8E-19 151.7 15.5 131 682-815 56-193 (252)
27 3ofk_A Nodulation protein S; N 99.6 1.3E-14 4.6E-19 144.1 13.5 117 682-816 38-157 (216)
28 2o57_A Putative sarcosine dime 99.6 1.4E-14 4.8E-19 151.3 14.2 122 680-816 64-190 (297)
29 3bkw_A MLL3908 protein, S-aden 99.6 2.6E-14 8.8E-19 143.7 15.2 113 685-816 34-147 (243)
30 1kpg_A CFA synthase;, cyclopro 99.6 4E-14 1.4E-18 147.2 17.1 120 682-817 52-172 (287)
31 3dlc_A Putative S-adenosyl-L-m 99.6 2.1E-14 7.2E-19 141.1 13.7 127 675-817 25-152 (219)
32 3g07_A 7SK snRNA methylphospha 99.6 2.6E-15 8.8E-20 158.8 7.6 186 694-900 46-288 (292)
33 3cc8_A Putative methyltransfer 99.6 5.4E-14 1.8E-18 139.2 16.3 159 686-881 25-187 (230)
34 2yqz_A Hypothetical protein TT 99.6 3.2E-14 1.1E-18 144.6 15.0 105 692-814 37-142 (263)
35 3lcc_A Putative methyl chlorid 99.5 1.6E-13 5.6E-18 138.6 19.2 136 694-875 66-202 (235)
36 3hem_A Cyclopropane-fatty-acyl 99.5 1.2E-13 4E-18 145.4 18.8 120 682-817 60-187 (302)
37 3g2m_A PCZA361.24; SAM-depende 99.5 4.4E-14 1.5E-18 148.5 15.4 121 681-818 70-195 (299)
38 2gs9_A Hypothetical protein TT 99.5 4.1E-14 1.4E-18 140.2 14.3 132 694-864 36-170 (211)
39 3thr_A Glycine N-methyltransfe 99.5 1.2E-14 4.2E-19 151.1 11.0 127 680-817 43-179 (293)
40 3i9f_A Putative type 11 methyl 99.5 4.2E-14 1.4E-18 135.5 13.7 106 686-816 9-115 (170)
41 3vc1_A Geranyl diphosphate 2-C 99.5 2E-14 6.9E-19 152.4 12.5 122 678-816 100-224 (312)
42 3kkz_A Uncharacterized protein 99.5 4.7E-14 1.6E-18 145.5 14.7 125 675-815 26-152 (267)
43 2kw5_A SLR1183 protein; struct 99.5 2E-13 6.9E-18 134.3 18.4 157 697-898 32-193 (202)
44 4hg2_A Methyltransferase type 99.5 2.4E-14 8.1E-19 150.6 12.5 114 675-814 22-136 (257)
45 3cgg_A SAM-dependent methyltra 99.5 4.1E-13 1.4E-17 129.3 19.6 103 693-815 45-149 (195)
46 3f4k_A Putative methyltransfer 99.5 5E-14 1.7E-18 143.3 13.8 124 676-815 27-152 (257)
47 2fk8_A Methoxy mycolic acid sy 99.5 1.3E-13 4.6E-18 145.8 17.0 119 682-817 78-198 (318)
48 3ccf_A Cyclopropane-fatty-acyl 99.5 4.1E-14 1.4E-18 147.0 12.8 109 686-817 49-158 (279)
49 3m70_A Tellurite resistance pr 99.5 1E-13 3.4E-18 144.4 15.6 111 687-814 113-224 (286)
50 3pfg_A N-methyltransferase; N, 99.5 4.9E-14 1.7E-18 144.7 12.6 115 678-813 32-151 (263)
51 1ri5_A MRNA capping enzyme; me 99.5 1.7E-13 5.9E-18 141.7 16.5 112 693-817 63-178 (298)
52 2p35_A Trans-aconitate 2-methy 99.5 1E-13 3.5E-18 140.9 14.5 111 685-816 24-135 (259)
53 3sm3_A SAM-dependent methyltra 99.5 1E-13 3.5E-18 138.0 13.7 114 694-817 30-145 (235)
54 3bxo_A N,N-dimethyltransferase 99.5 1.4E-13 4.7E-18 138.0 14.6 103 693-816 39-144 (239)
55 3d2l_A SAM-dependent methyltra 99.5 5.3E-13 1.8E-17 134.1 18.8 119 678-816 19-140 (243)
56 3bkx_A SAM-dependent methyltra 99.5 5.4E-13 1.9E-17 137.3 17.8 122 682-816 31-162 (275)
57 3e8s_A Putative SAM dependent 99.5 3.5E-13 1.2E-17 133.2 15.6 156 684-876 42-205 (227)
58 2aot_A HMT, histamine N-methyl 99.5 3E-13 1E-17 142.1 15.5 148 694-875 52-216 (292)
59 2p8j_A S-adenosylmethionine-de 99.5 2.1E-13 7E-18 134.3 12.5 109 693-817 22-132 (209)
60 4e2x_A TCAB9; kijanose, tetron 99.5 4.7E-14 1.6E-18 155.3 8.6 153 682-875 95-248 (416)
61 3ggd_A SAM-dependent methyltra 99.5 1.7E-13 5.8E-18 139.0 11.0 157 693-878 55-217 (245)
62 1vlm_A SAM-dependent methyltra 99.5 1E-12 3.5E-17 131.9 16.5 145 679-874 35-182 (219)
63 3mgg_A Methyltransferase; NYSG 99.5 2.3E-13 7.9E-18 140.4 11.8 109 693-816 36-145 (276)
64 3iv6_A Putative Zn-dependent a 99.5 1.1E-12 3.7E-17 139.2 17.1 121 681-818 32-153 (261)
65 3ege_A Putative methyltransfer 99.5 3.6E-13 1.2E-17 139.1 13.1 112 681-816 21-133 (261)
66 1ve3_A Hypothetical protein PH 99.5 5.6E-13 1.9E-17 132.6 14.0 107 694-816 38-145 (227)
67 3g5t_A Trans-aconitate 3-methy 99.5 4.4E-13 1.5E-17 140.9 14.0 122 676-811 19-147 (299)
68 3gu3_A Methyltransferase; alph 99.4 6.8E-13 2.3E-17 138.9 15.2 118 682-815 9-128 (284)
69 2pxx_A Uncharacterized protein 99.4 4E-13 1.4E-17 131.9 12.2 108 693-816 41-162 (215)
70 1wzn_A SAM-dependent methyltra 99.4 1E-12 3.4E-17 133.6 15.2 118 682-816 26-148 (252)
71 3ocj_A Putative exported prote 99.4 1.7E-12 5.9E-17 137.2 16.9 112 693-816 117-230 (305)
72 1dus_A MJ0882; hypothetical pr 99.4 1.2E-12 4.3E-17 125.8 13.9 127 674-817 32-161 (194)
73 4azs_A Methyltransferase WBDD; 99.4 1.8E-13 6E-18 158.5 9.4 109 694-817 66-178 (569)
74 3p9n_A Possible methyltransfer 99.4 1.2E-12 4.2E-17 128.4 13.3 119 684-817 31-157 (189)
75 3lbf_A Protein-L-isoaspartate 99.4 8.7E-13 3E-17 130.8 12.3 111 682-815 65-176 (210)
76 2i62_A Nicotinamide N-methyltr 99.4 2.5E-12 8.7E-17 130.8 15.8 120 693-815 55-200 (265)
77 2a14_A Indolethylamine N-methy 99.4 7.5E-13 2.6E-17 137.6 11.4 121 692-814 53-198 (263)
78 2avn_A Ubiquinone/menaquinone 99.4 9.2E-13 3.1E-17 135.8 11.9 101 694-816 54-155 (260)
79 2vdw_A Vaccinia virus capping 99.4 4E-13 1.4E-17 144.1 9.5 116 694-817 48-173 (302)
80 4fsd_A Arsenic methyltransfera 99.4 5.8E-13 2E-17 146.3 10.9 119 692-816 81-206 (383)
81 3mti_A RRNA methylase; SAM-dep 99.4 1.5E-12 5.1E-17 126.7 11.8 105 693-813 21-135 (185)
82 3bgv_A MRNA CAP guanine-N7 met 99.4 2.5E-12 8.5E-17 136.3 13.8 116 694-816 34-158 (313)
83 2r3s_A Uncharacterized protein 99.4 4.5E-12 1.6E-16 134.5 15.6 120 683-816 152-274 (335)
84 2g72_A Phenylethanolamine N-me 99.4 2.2E-12 7.5E-17 135.0 12.7 128 683-812 58-214 (289)
85 3hm2_A Precorrin-6Y C5,15-meth 99.4 5.3E-12 1.8E-16 121.0 14.3 113 684-816 15-130 (178)
86 3mcz_A O-methyltransferase; ad 99.4 1.5E-11 5.2E-16 132.1 18.7 117 685-814 169-288 (352)
87 2qe6_A Uncharacterized protein 99.3 7E-12 2.4E-16 132.5 15.1 109 694-817 77-200 (274)
88 1vbf_A 231AA long hypothetical 99.3 6.3E-12 2.1E-16 126.4 13.4 112 681-817 57-169 (231)
89 3dp7_A SAM-dependent methyltra 99.3 2.2E-11 7.5E-16 132.7 18.5 109 693-815 178-289 (363)
90 3e05_A Precorrin-6Y C5,15-meth 99.3 9.2E-12 3.2E-16 123.4 14.1 114 684-815 30-144 (204)
91 1zx0_A Guanidinoacetate N-meth 99.3 3.7E-12 1.3E-16 129.5 11.2 106 693-813 59-170 (236)
92 3mq2_A 16S rRNA methyltransfer 99.3 9.9E-12 3.4E-16 124.1 13.8 115 688-814 21-141 (218)
93 2yxe_A Protein-L-isoaspartate 99.3 6.5E-12 2.2E-16 125.0 12.1 114 683-816 66-180 (215)
94 3njr_A Precorrin-6Y methylase; 99.3 1.6E-11 5.3E-16 123.7 14.9 110 684-815 45-156 (204)
95 3fzg_A 16S rRNA methylase; met 99.3 2.1E-12 7.1E-17 132.5 8.0 119 677-815 34-153 (200)
96 1qzz_A RDMB, aclacinomycin-10- 99.3 1.5E-11 5E-16 133.0 14.9 115 685-814 173-288 (374)
97 1l3i_A Precorrin-6Y methyltran 99.3 7.3E-12 2.5E-16 120.3 11.0 118 678-815 17-136 (192)
98 3i53_A O-methyltransferase; CO 99.3 1.3E-11 4.3E-16 132.1 13.5 108 694-816 169-277 (332)
99 2yxd_A Probable cobalt-precorr 99.3 1.9E-11 6.6E-16 116.8 12.8 114 678-815 19-133 (183)
100 3evz_A Methyltransferase; NYSG 99.3 6.9E-11 2.4E-15 118.7 17.4 108 693-815 54-181 (230)
101 3orh_A Guanidinoacetate N-meth 99.3 9.9E-12 3.4E-16 127.8 11.0 101 693-810 59-166 (236)
102 3gwz_A MMCR; methyltransferase 99.3 1.2E-10 4.1E-15 127.2 19.4 116 684-814 192-308 (369)
103 1dl5_A Protein-L-isoaspartate 99.3 1.6E-11 5.3E-16 131.6 12.2 115 681-815 62-177 (317)
104 4dzr_A Protein-(glutamine-N5) 99.3 2.6E-12 8.8E-17 125.9 5.6 125 677-816 12-168 (215)
105 1tw3_A COMT, carminomycin 4-O- 99.3 3.7E-11 1.3E-15 129.4 14.8 116 685-815 174-290 (360)
106 2esr_A Methyltransferase; stru 99.3 1.8E-11 6E-16 118.3 11.0 118 683-817 19-142 (177)
107 2ift_A Putative methylase HI07 99.3 1.2E-11 4E-16 123.9 10.0 115 686-817 44-167 (201)
108 1yzh_A TRNA (guanine-N(7)-)-me 99.3 2.9E-11 1E-15 121.1 12.5 111 694-817 41-160 (214)
109 2fca_A TRNA (guanine-N(7)-)-me 99.2 2.2E-11 7.4E-16 123.2 11.5 111 694-817 38-157 (213)
110 3dxy_A TRNA (guanine-N(7)-)-me 99.2 1.1E-11 3.9E-16 126.6 8.9 114 694-820 34-157 (218)
111 2ip2_A Probable phenazine-spec 99.2 3.1E-11 1.1E-15 128.8 12.6 117 683-815 157-274 (334)
112 1ws6_A Methyltransferase; stru 99.2 1.1E-11 3.9E-16 117.6 8.2 115 683-817 28-151 (171)
113 2fhp_A Methylase, putative; al 99.2 2.7E-11 9.2E-16 116.9 10.9 123 679-817 28-158 (187)
114 3grz_A L11 mtase, ribosomal pr 99.2 2.4E-11 8.1E-16 120.3 10.3 102 693-815 59-161 (205)
115 1jg1_A PIMT;, protein-L-isoasp 99.2 3.3E-11 1.1E-15 122.6 11.7 113 683-818 80-194 (235)
116 3eey_A Putative rRNA methylase 99.2 4.8E-11 1.6E-15 117.1 12.3 112 692-814 20-140 (197)
117 2b3t_A Protein methyltransfera 99.2 6.2E-11 2.1E-15 123.8 13.7 124 676-814 92-239 (276)
118 1x19_A CRTF-related protein; m 99.2 1E-10 3.6E-15 126.5 15.5 117 684-815 180-297 (359)
119 3q7e_A Protein arginine N-meth 99.2 4.6E-11 1.6E-15 130.2 12.6 107 691-811 63-170 (349)
120 2y1w_A Histone-arginine methyl 99.2 4.7E-11 1.6E-15 129.9 12.6 114 684-813 40-155 (348)
121 1p91_A Ribosomal RNA large sub 99.2 3.3E-11 1.1E-15 124.1 10.8 99 693-818 84-183 (269)
122 3ckk_A TRNA (guanine-N(7)-)-me 99.2 4.9E-11 1.7E-15 123.3 12.2 120 694-820 46-175 (235)
123 2fyt_A Protein arginine N-meth 99.2 1E-10 3.4E-15 127.2 15.1 112 684-811 54-168 (340)
124 1af7_A Chemotaxis receptor met 99.2 6E-11 2E-15 126.5 12.8 119 694-812 105-250 (274)
125 2pbf_A Protein-L-isoaspartate 99.2 5.5E-11 1.9E-15 119.5 11.2 116 685-815 69-195 (227)
126 2fpo_A Methylase YHHF; structu 99.2 5E-11 1.7E-15 119.4 10.9 115 684-815 43-162 (202)
127 3dmg_A Probable ribosomal RNA 99.2 1.5E-10 5.2E-15 128.4 15.6 114 693-822 232-350 (381)
128 3fpf_A Mtnas, putative unchara 99.2 1.4E-10 4.6E-15 125.7 14.5 105 689-814 117-223 (298)
129 1i1n_A Protein-L-isoaspartate 99.2 8.1E-11 2.8E-15 118.2 11.8 116 686-816 67-185 (226)
130 2pwy_A TRNA (adenine-N(1)-)-me 99.2 5.8E-11 2E-15 120.8 10.7 121 677-816 79-201 (258)
131 3ntv_A MW1564 protein; rossman 99.2 1.4E-10 4.7E-15 118.4 13.5 116 679-811 56-174 (232)
132 1nt2_A Fibrillarin-like PRE-rR 99.2 9.6E-11 3.3E-15 118.9 12.1 104 692-814 55-162 (210)
133 1yb2_A Hypothetical protein TA 99.2 4.6E-11 1.6E-15 124.9 10.0 117 679-816 95-214 (275)
134 3r0q_C Probable protein argini 99.2 9.5E-11 3.3E-15 129.0 12.9 113 684-811 53-166 (376)
135 3u81_A Catechol O-methyltransf 99.2 9.4E-11 3.2E-15 118.2 11.8 117 682-812 46-169 (221)
136 3mb5_A SAM-dependent methyltra 99.2 7.1E-11 2.4E-15 120.7 10.4 120 677-817 76-198 (255)
137 1nv8_A HEMK protein; class I a 99.2 2.4E-10 8.3E-15 121.4 14.9 162 623-817 67-253 (284)
138 1i9g_A Hypothetical protein RV 99.2 6.1E-11 2.1E-15 122.8 10.0 125 677-817 82-207 (280)
139 3lpm_A Putative methyltransfer 99.2 2E-10 6.8E-15 118.9 13.8 118 686-816 40-179 (259)
140 3duw_A OMT, O-methyltransferas 99.2 4.8E-10 1.6E-14 112.3 15.8 113 686-814 50-168 (223)
141 1o9g_A RRNA methyltransferase; 99.2 8E-11 2.7E-15 120.8 10.3 124 682-816 39-216 (250)
142 1xdz_A Methyltransferase GIDB; 99.2 8E-11 2.7E-15 120.4 10.1 99 694-811 70-172 (240)
143 3gdh_A Trimethylguanosine synt 99.1 1.9E-11 6.4E-16 124.0 5.3 101 693-811 77-179 (241)
144 3tr6_A O-methyltransferase; ce 99.1 2.4E-10 8.3E-15 114.4 13.2 113 685-813 55-174 (225)
145 1g6q_1 HnRNP arginine N-methyl 99.1 2E-10 6.8E-15 124.0 13.4 113 685-811 29-142 (328)
146 4dcm_A Ribosomal RNA large sub 99.1 1.6E-10 5.5E-15 127.8 12.9 122 683-815 211-336 (375)
147 2hnk_A SAM-dependent O-methylt 99.1 1.7E-10 5.9E-15 117.6 12.0 114 684-813 50-181 (239)
148 3lst_A CALO1 methyltransferase 99.1 1.4E-10 4.9E-15 125.3 11.8 113 685-815 175-288 (348)
149 1jsx_A Glucose-inhibited divis 99.1 1.8E-10 6E-15 113.7 11.3 110 683-812 51-164 (207)
150 1fbn_A MJ fibrillarin homologu 99.1 1.1E-10 3.9E-15 118.5 10.1 104 688-812 68-177 (230)
151 2igt_A SAM dependent methyltra 99.1 4.3E-10 1.5E-14 122.5 15.3 116 685-816 143-275 (332)
152 1ne2_A Hypothetical protein TA 99.1 2.9E-10 9.7E-15 112.3 12.6 96 692-811 49-144 (200)
153 3tfw_A Putative O-methyltransf 99.1 1.7E-09 5.7E-14 111.8 18.6 113 686-814 55-171 (248)
154 2ipx_A RRNA 2'-O-methyltransfe 99.1 1.6E-10 5.4E-15 117.2 10.7 105 692-814 75-183 (233)
155 3uwp_A Histone-lysine N-methyl 99.1 1.3E-10 4.5E-15 131.0 11.0 126 677-812 156-287 (438)
156 2pjd_A Ribosomal RNA small sub 99.1 6.9E-11 2.4E-15 128.0 8.4 126 674-815 176-305 (343)
157 3tma_A Methyltransferase; thum 99.1 2.1E-10 7.1E-15 124.5 11.9 128 677-816 186-320 (354)
158 2ozv_A Hypothetical protein AT 99.1 1.9E-10 6.5E-15 120.0 11.1 122 686-817 28-174 (260)
159 3dr5_A Putative O-methyltransf 99.1 1.9E-10 6.6E-15 117.7 10.9 101 695-811 57-160 (221)
160 3giw_A Protein of unknown func 99.1 2.3E-10 7.8E-15 122.8 11.8 113 693-818 77-205 (277)
161 2yvl_A TRMI protein, hypotheti 99.1 4E-10 1.4E-14 114.0 12.8 117 680-817 77-194 (248)
162 3m33_A Uncharacterized protein 99.1 9.2E-11 3.1E-15 118.7 8.0 91 693-811 47-139 (226)
163 1r18_A Protein-L-isoaspartate( 99.1 1.7E-10 5.9E-15 116.5 9.6 115 686-815 74-196 (227)
164 3b3j_A Histone-arginine methyl 99.1 3.2E-10 1.1E-14 129.4 12.5 111 684-810 148-260 (480)
165 3reo_A (ISO)eugenol O-methyltr 99.1 7.6E-10 2.6E-14 121.1 14.8 107 686-815 194-302 (368)
166 4a6d_A Hydroxyindole O-methylt 99.1 1.6E-09 5.5E-14 118.1 16.9 114 685-814 170-284 (353)
167 1g8a_A Fibrillarin-like PRE-rR 99.1 3.6E-10 1.2E-14 113.8 10.9 104 692-813 71-178 (227)
168 3bzb_A Uncharacterized protein 99.1 8.8E-10 3E-14 116.3 14.1 121 680-811 65-203 (281)
169 3q87_B N6 adenine specific DNA 99.1 3.2E-10 1.1E-14 110.6 9.9 95 693-815 22-125 (170)
170 1ej0_A FTSJ; methyltransferase 99.1 2.7E-10 9.1E-15 107.2 8.8 109 686-817 13-140 (180)
171 2vdv_E TRNA (guanine-N(7)-)-me 99.1 3.2E-10 1.1E-14 116.5 9.8 123 694-821 49-181 (246)
172 1wy7_A Hypothetical protein PH 99.1 2.2E-09 7.6E-14 106.1 15.2 100 692-811 47-146 (207)
173 3p2e_A 16S rRNA methylase; met 99.0 1.6E-10 5.5E-15 118.6 6.8 108 693-816 23-143 (225)
174 3r3h_A O-methyltransferase, SA 99.0 2.7E-10 9.4E-15 118.0 8.6 113 684-812 50-169 (242)
175 2gpy_A O-methyltransferase; st 99.0 4.7E-10 1.6E-14 113.5 10.1 116 682-814 42-161 (233)
176 1ixk_A Methyltransferase; open 99.0 4.6E-10 1.6E-14 120.8 10.6 118 686-815 110-248 (315)
177 1o54_A SAM-dependent O-methylt 99.0 6.1E-10 2.1E-14 116.1 11.2 121 677-816 95-216 (277)
178 3c3p_A Methyltransferase; NP_9 99.0 5.1E-10 1.7E-14 111.6 10.0 105 691-812 53-159 (210)
179 1fp1_D Isoliquiritigenin 2'-O- 99.0 7.6E-10 2.6E-14 120.7 12.1 107 684-813 198-306 (372)
180 2frn_A Hypothetical protein PH 99.0 5.6E-10 1.9E-14 117.7 10.4 119 673-815 107-227 (278)
181 2nxc_A L11 mtase, ribosomal pr 99.0 4.2E-10 1.4E-14 117.1 9.1 100 693-814 119-219 (254)
182 3bwc_A Spermidine synthase; SA 99.0 8.9E-10 3.1E-14 118.0 11.9 113 693-814 94-211 (304)
183 3g89_A Ribosomal RNA small sub 99.0 3.2E-10 1.1E-14 118.2 8.2 100 693-811 79-182 (249)
184 2avd_A Catechol-O-methyltransf 99.0 2E-09 6.7E-14 108.1 13.3 112 685-812 60-178 (229)
185 2b25_A Hypothetical protein; s 99.0 6E-10 2.1E-14 119.7 10.1 129 679-817 90-223 (336)
186 4df3_A Fibrillarin-like rRNA/T 99.0 1.2E-09 4.1E-14 114.4 12.1 107 690-814 73-183 (233)
187 3id6_C Fibrillarin-like rRNA/T 99.0 1.2E-09 4E-14 114.1 11.8 120 677-814 56-182 (232)
188 3frh_A 16S rRNA methylase; met 99.0 9.2E-10 3.1E-14 116.5 10.9 105 693-816 104-208 (253)
189 1fp2_A Isoflavone O-methyltran 99.0 1.4E-09 4.7E-14 117.6 12.5 100 693-815 187-290 (352)
190 1u2z_A Histone-lysine N-methyl 99.0 1.3E-09 4.3E-14 123.4 12.3 117 680-812 228-358 (433)
191 3hp7_A Hemolysin, putative; st 99.0 1.2E-09 4.1E-14 117.8 11.1 106 682-811 72-183 (291)
192 3p9c_A Caffeic acid O-methyltr 99.0 2.5E-09 8.4E-14 117.1 13.7 107 685-814 191-299 (364)
193 3gnl_A Uncharacterized protein 99.0 2.5E-09 8.7E-14 112.8 13.1 119 680-817 9-128 (244)
194 4hc4_A Protein arginine N-meth 99.0 1.2E-09 3.9E-14 121.7 11.0 106 691-811 80-186 (376)
195 3lec_A NADB-rossmann superfami 99.0 3.5E-09 1.2E-13 110.8 13.9 120 680-817 9-128 (230)
196 2h00_A Methyltransferase 10 do 99.0 7.1E-10 2.4E-14 113.6 8.1 105 694-811 65-190 (254)
197 3lcv_B Sisomicin-gentamicin re 99.0 9.6E-10 3.3E-14 117.6 8.7 117 683-817 123-239 (281)
198 1sui_A Caffeoyl-COA O-methyltr 99.0 1.6E-09 5.6E-14 112.5 10.2 112 685-812 70-189 (247)
199 3tm4_A TRNA (guanine N2-)-meth 99.0 1.8E-09 6.2E-14 118.8 11.0 124 678-815 202-331 (373)
200 3kr9_A SAM-dependent methyltra 98.9 6E-09 2E-13 108.6 14.1 117 681-816 4-121 (225)
201 3opn_A Putative hemolysin; str 98.9 3.1E-09 1E-13 110.1 11.7 108 682-813 24-137 (232)
202 3cbg_A O-methyltransferase; cy 98.9 4.7E-09 1.6E-13 107.3 12.5 108 690-813 68-182 (232)
203 2zfu_A Nucleomethylin, cerebra 98.9 1.4E-09 5E-14 108.0 8.3 93 686-814 58-152 (215)
204 3ajd_A Putative methyltransfer 98.9 1.7E-09 5.9E-14 113.6 9.2 116 687-815 76-213 (274)
205 3adn_A Spermidine synthase; am 98.9 6.2E-09 2.1E-13 111.7 13.0 113 693-813 82-198 (294)
206 1zg3_A Isoflavanone 4'-O-methy 98.9 3.2E-09 1.1E-13 115.1 10.7 99 693-814 192-294 (358)
207 3c0k_A UPF0064 protein YCCW; P 98.9 1.7E-08 5.7E-13 111.6 16.4 105 693-813 219-339 (396)
208 2plw_A Ribosomal RNA methyltra 98.9 6.4E-09 2.2E-13 102.1 11.5 101 693-816 21-157 (201)
209 3a27_A TYW2, uncharacterized p 98.9 2.6E-09 8.9E-14 112.5 9.3 102 693-814 118-220 (272)
210 1zq9_A Probable dimethyladenos 98.9 8E-09 2.7E-13 109.7 12.8 87 682-784 16-102 (285)
211 2bm8_A Cephalosporin hydroxyla 98.9 2.2E-09 7.6E-14 110.8 8.2 104 688-814 75-188 (236)
212 2b78_A Hypothetical protein SM 98.9 1.3E-08 4.4E-13 112.7 14.7 108 693-814 211-332 (385)
213 2i7c_A Spermidine synthase; tr 98.9 6.8E-09 2.3E-13 110.2 11.8 113 693-814 77-193 (283)
214 3c3y_A Pfomt, O-methyltransfer 98.9 4.6E-09 1.6E-13 108.0 9.7 112 685-812 61-180 (237)
215 2ld4_A Anamorsin; methyltransf 98.9 8.1E-10 2.8E-14 107.0 3.8 90 691-814 9-102 (176)
216 2o07_A Spermidine synthase; st 98.9 7.7E-09 2.6E-13 111.3 11.7 113 693-814 94-210 (304)
217 3gjy_A Spermidine synthase; AP 98.9 8.8E-09 3E-13 112.4 11.7 106 696-814 91-201 (317)
218 2h1r_A Dimethyladenosine trans 98.8 1.1E-08 3.6E-13 109.6 11.9 88 682-786 30-117 (299)
219 1uir_A Polyamine aminopropyltr 98.8 7.1E-09 2.4E-13 111.7 10.6 113 693-813 76-195 (314)
220 3sso_A Methyltransferase; macr 98.8 1.9E-09 6.6E-14 121.2 6.3 117 676-817 199-328 (419)
221 1iy9_A Spermidine synthase; ro 98.8 6.5E-09 2.2E-13 110.0 9.9 113 693-814 74-190 (275)
222 1xj5_A Spermidine synthase 1; 98.8 1.6E-08 5.4E-13 110.6 13.2 111 693-812 119-234 (334)
223 1uwv_A 23S rRNA (uracil-5-)-me 98.8 1.6E-08 5.4E-13 113.5 13.3 113 679-812 271-388 (433)
224 2yxl_A PH0851 protein, 450AA l 98.8 1.6E-08 5.5E-13 113.9 13.0 119 686-816 251-392 (450)
225 2as0_A Hypothetical protein PH 98.8 2.7E-08 9.3E-13 109.8 14.2 108 694-815 217-337 (396)
226 2f8l_A Hypothetical protein LM 98.8 9.6E-09 3.3E-13 111.2 10.0 130 673-816 108-259 (344)
227 2pt6_A Spermidine synthase; tr 98.8 1.7E-08 5.9E-13 109.3 12.0 113 693-815 115-232 (321)
228 1inl_A Spermidine synthase; be 98.8 2E-08 6.9E-13 107.3 11.9 112 693-814 89-206 (296)
229 2b2c_A Spermidine synthase; be 98.8 1.5E-08 5.1E-13 109.8 10.9 111 693-813 107-222 (314)
230 1mjf_A Spermidine synthase; sp 98.8 1.9E-08 6.4E-13 106.6 11.3 116 693-813 74-193 (281)
231 1wxx_A TT1595, hypothetical pr 98.8 3.6E-08 1.2E-12 108.6 13.4 107 694-815 209-327 (382)
232 2frx_A Hypothetical protein YE 98.8 1.7E-08 5.7E-13 115.4 10.8 118 686-815 107-248 (479)
233 3gru_A Dimethyladenosine trans 98.8 1.9E-08 6.5E-13 108.5 10.3 87 682-785 38-124 (295)
234 2qm3_A Predicted methyltransfe 98.8 4.8E-08 1.6E-12 107.2 13.7 106 693-815 171-280 (373)
235 2wa2_A Non-structural protein 98.7 5.8E-09 2E-13 111.1 5.7 115 683-815 71-195 (276)
236 2oxt_A Nucleoside-2'-O-methylt 98.7 8.3E-09 2.8E-13 109.2 6.2 116 681-815 61-187 (265)
237 2nyu_A Putative ribosomal RNA 98.7 5.1E-08 1.7E-12 95.1 10.6 101 693-816 21-148 (196)
238 1sqg_A SUN protein, FMU protei 98.7 4.3E-08 1.5E-12 109.6 10.7 116 686-815 238-376 (429)
239 3m6w_A RRNA methylase; rRNA me 98.7 2.2E-08 7.4E-13 114.3 8.3 117 686-815 93-231 (464)
240 2yx1_A Hypothetical protein MJ 98.7 6.9E-08 2.4E-12 104.8 11.7 115 673-815 177-293 (336)
241 3tqs_A Ribosomal RNA small sub 98.7 7.1E-08 2.4E-12 101.7 11.1 83 682-782 17-103 (255)
242 1qam_A ERMC' methyltransferase 98.7 8.5E-08 2.9E-12 99.5 11.5 83 682-782 18-101 (244)
243 2jjq_A Uncharacterized RNA met 98.7 1.8E-07 6.1E-12 105.3 14.9 98 693-813 289-387 (425)
244 4dmg_A Putative uncharacterize 98.7 2E-07 6.8E-12 104.1 14.9 105 694-814 214-327 (393)
245 2cmg_A Spermidine synthase; tr 98.6 4.7E-08 1.6E-12 103.2 9.1 100 693-813 71-171 (262)
246 3v97_A Ribosomal RNA large sub 98.6 6.2E-08 2.1E-12 115.4 11.1 106 694-815 539-659 (703)
247 3dou_A Ribosomal RNA large sub 98.6 1.9E-07 6.4E-12 93.6 12.8 97 693-815 24-141 (191)
248 2p41_A Type II methyltransfera 98.6 2.4E-08 8.1E-13 107.7 6.7 103 693-816 81-194 (305)
249 3ldg_A Putative uncharacterize 98.6 1.9E-07 6.7E-12 103.9 14.0 133 677-822 177-352 (384)
250 3k0b_A Predicted N6-adenine-sp 98.6 8.8E-08 3E-12 106.8 11.1 134 676-822 183-359 (393)
251 2ih2_A Modification methylase 98.6 5.8E-08 2E-12 106.4 8.5 112 683-816 28-167 (421)
252 3m4x_A NOL1/NOP2/SUN family pr 98.6 4.8E-08 1.6E-12 111.2 7.7 118 686-815 97-236 (456)
253 3ldu_A Putative methylase; str 98.6 1.9E-07 6.4E-12 103.8 12.1 135 676-822 177-353 (385)
254 3k6r_A Putative transferase PH 98.6 1.3E-07 4.4E-12 101.3 10.1 116 671-809 105-220 (278)
255 3fut_A Dimethyladenosine trans 98.6 1.2E-07 4.1E-12 101.0 9.8 91 682-792 35-126 (271)
256 3bt7_A TRNA (uracil-5-)-methyl 98.6 1.9E-07 6.5E-12 102.5 10.9 87 680-782 200-302 (369)
257 2r6z_A UPF0341 protein in RSP 98.5 7.9E-08 2.7E-12 101.4 5.1 88 686-788 75-174 (258)
258 2okc_A Type I restriction enzy 98.5 1.2E-07 4E-12 106.6 6.7 120 683-815 160-309 (445)
259 1yub_A Ermam, rRNA methyltrans 98.5 2.1E-08 7.2E-13 103.4 0.2 81 684-782 19-100 (245)
260 3ftd_A Dimethyladenosine trans 98.4 5.8E-07 2E-11 94.2 10.5 90 682-789 19-108 (249)
261 2b9e_A NOL1/NOP2/SUN domain fa 98.4 7.6E-07 2.6E-11 96.4 10.9 84 686-781 94-180 (309)
262 1m6y_A S-adenosyl-methyltransf 98.3 4.4E-07 1.5E-11 98.1 7.1 86 684-783 16-106 (301)
263 3uzu_A Ribosomal RNA small sub 98.3 7.4E-07 2.5E-11 95.2 8.4 74 683-772 31-105 (279)
264 1qyr_A KSGA, high level kasuga 98.3 6E-07 2E-11 94.4 6.0 87 683-789 10-103 (252)
265 2dul_A N(2),N(2)-dimethylguano 98.3 1.1E-06 3.7E-11 97.7 8.1 113 694-813 47-164 (378)
266 2xyq_A Putative 2'-O-methyl tr 98.2 1.4E-06 4.7E-11 94.0 7.9 98 691-816 60-174 (290)
267 2qfm_A Spermine synthase; sper 98.2 2.7E-06 9.3E-11 94.5 8.8 111 694-813 188-313 (364)
268 3v97_A Ribosomal RNA large sub 98.2 5.7E-06 2E-10 98.7 11.6 131 677-819 173-353 (703)
269 3ll7_A Putative methyltransfer 98.1 1.6E-06 5.6E-11 97.6 5.8 76 694-782 93-170 (410)
270 3axs_A Probable N(2),N(2)-dime 98.0 1.2E-05 4.1E-10 90.1 10.2 103 693-813 51-158 (392)
271 2ar0_A M.ecoki, type I restric 98.0 6.9E-06 2.4E-10 95.2 8.6 120 684-815 159-314 (541)
272 2oyr_A UPF0341 protein YHIQ; a 97.8 1.8E-05 6.1E-10 83.9 6.8 97 684-788 76-177 (258)
273 3lkd_A Type I restriction-modi 97.8 0.00011 3.8E-09 85.4 13.2 122 684-816 207-361 (542)
274 3o4f_A Spermidine synthase; am 97.8 9.3E-05 3.2E-09 80.2 11.5 110 692-812 81-196 (294)
275 3cvo_A Methyltransferase-like 97.6 0.00064 2.2E-08 69.9 14.0 106 683-812 21-152 (202)
276 3ua3_A Protein arginine N-meth 97.6 5E-05 1.7E-09 90.5 6.3 106 695-812 410-532 (745)
277 3khk_A Type I restriction-modi 97.6 7.6E-05 2.6E-09 86.7 7.7 120 684-816 235-398 (544)
278 4gqb_A Protein arginine N-meth 97.5 0.00017 5.7E-09 85.5 9.7 100 695-812 358-465 (637)
279 4auk_A Ribosomal RNA large sub 97.5 0.00075 2.6E-08 75.4 13.8 71 693-785 210-280 (375)
280 3evf_A RNA-directed RNA polyme 97.5 9.7E-05 3.3E-09 79.4 6.4 118 682-815 62-186 (277)
281 1wg8_A Predicted S-adenosylmet 97.5 0.00014 4.8E-09 78.5 7.4 79 684-781 12-95 (285)
282 3s1s_A Restriction endonucleas 97.5 0.00081 2.8E-08 81.5 14.3 117 694-816 321-468 (878)
283 2b7v_A Double-stranded RNA-spe 97.4 0.00039 1.3E-08 59.8 7.6 66 14-93 2-67 (71)
284 3p1x_A Interleukin enhancer-bi 97.4 0.00047 1.6E-08 60.2 7.8 69 13-95 4-72 (75)
285 1x49_A Interferon-induced, dou 97.2 0.00063 2.1E-08 62.4 7.7 78 7-96 5-85 (97)
286 2lkn_A AH receptor-interacting 97.2 0.0002 6.7E-09 71.7 4.0 82 562-645 8-91 (165)
287 3gcz_A Polyprotein; flavivirus 97.2 0.00022 7.5E-09 76.8 4.5 118 682-815 78-203 (282)
288 2k4m_A TR8_protein, UPF0146 pr 97.1 0.00079 2.7E-08 66.6 7.4 100 680-817 23-125 (153)
289 3llh_A RISC-loading complex su 97.1 0.00099 3.4E-08 60.1 7.0 70 12-94 10-82 (90)
290 1ekz_A DSRBDIII, maternal effe 97.1 0.00081 2.8E-08 58.6 6.1 69 12-93 3-74 (76)
291 2l33_A Interleukin enhancer-bi 97.0 0.0021 7.1E-08 58.5 8.7 68 13-94 14-81 (91)
292 3b5i_A S-adenosyl-L-methionine 97.0 0.0036 1.2E-07 69.8 12.4 122 695-816 53-228 (374)
293 2ppn_A FK506-binding protein 1 97.0 0.00093 3.2E-08 60.7 6.3 74 566-640 2-75 (107)
294 2qy6_A UPF0209 protein YFCK; s 97.0 0.0007 2.4E-08 71.6 5.9 118 694-812 60-211 (257)
295 3c6k_A Spermine synthase; sper 97.0 0.0015 5.3E-08 73.0 8.8 112 694-812 205-329 (381)
296 2zig_A TTHA0409, putative modi 96.9 0.0012 4.1E-08 70.3 7.3 54 684-741 226-279 (297)
297 2dix_A Interferon-inducible do 96.9 0.0022 7.4E-08 57.2 7.6 66 15-93 7-75 (84)
298 1uhz_A Staufen (RNA binding pr 96.9 0.0027 9.3E-08 57.3 8.2 67 15-94 5-75 (89)
299 2y78_A Peptidyl-prolyl CIS-tra 96.9 0.0014 4.8E-08 62.8 6.6 89 550-640 14-102 (133)
300 1yat_A FK506 binding protein; 96.9 0.0013 4.4E-08 60.6 6.1 77 563-640 5-81 (113)
301 2efj_A 3,7-dimethylxanthine me 96.8 0.0036 1.2E-07 70.1 10.5 108 695-816 53-228 (384)
302 1di2_A XLRBPA, double stranded 96.8 0.0014 4.9E-08 55.9 5.7 63 18-93 2-68 (69)
303 2lgo_A FKBP; infectious diseas 96.8 0.0013 4.3E-08 62.7 5.6 81 559-640 17-99 (130)
304 3adj_A F21M12.9 protein; HYL1, 96.8 0.0019 6.6E-08 56.3 6.2 66 17-94 5-74 (76)
305 2cpn_A TAR RNA-binding protein 96.7 0.0049 1.7E-07 55.6 8.7 66 15-93 15-84 (89)
306 3o5q_A Peptidyl-prolyl CIS-tra 96.7 0.0023 7.7E-08 60.5 6.7 77 563-640 18-94 (128)
307 1s29_A LA protein; winged heli 96.7 0.0011 3.8E-08 60.6 4.2 88 101-208 5-92 (92)
308 3adl_A RISC-loading complex su 96.7 0.0027 9.1E-08 57.3 6.5 69 13-94 12-84 (88)
309 2ljh_A Double-stranded RNA-spe 96.7 0.0041 1.4E-07 58.9 8.0 70 15-98 36-105 (114)
310 1x48_A Interferon-induced, dou 96.7 0.0012 4.1E-08 59.5 4.0 68 17-97 7-77 (88)
311 4dip_A Peptidyl-prolyl CIS-tra 96.6 0.0022 7.7E-08 60.0 6.0 80 561-640 9-91 (125)
312 4fzv_A Putative methyltransfer 96.6 0.0043 1.5E-07 68.8 9.2 123 686-815 140-286 (359)
313 3adg_A F21M12.9 protein; HYL1, 96.6 0.0022 7.4E-08 55.4 4.9 64 17-93 4-72 (73)
314 1r9h_A FKB-6, FK506 binding pr 96.5 0.0033 1.1E-07 60.1 6.5 78 562-640 12-89 (135)
315 2b7t_A Double-stranded RNA-spe 96.5 0.0021 7.1E-08 55.6 4.7 65 16-94 4-71 (73)
316 3kz7_A FK506-binding protein 3 96.5 0.0024 8.2E-08 59.2 5.2 76 564-640 4-86 (119)
317 1m6e_X S-adenosyl-L-methionnin 96.5 0.0048 1.6E-07 68.5 8.3 110 695-815 52-211 (359)
318 2dmy_A Spermatid perinuclear R 96.5 0.0034 1.2E-07 57.5 5.9 71 13-97 13-86 (97)
319 3o5e_A Peptidyl-prolyl CIS-tra 96.5 0.0027 9.1E-08 61.4 5.4 77 563-640 34-110 (144)
320 2f4e_A ATFKBP42; FKBP-like, al 96.4 0.002 6.8E-08 64.8 4.5 80 560-640 45-125 (180)
321 2vn1_A 70 kDa peptidylprolyl i 96.4 0.0042 1.4E-07 58.6 6.4 74 567-640 19-94 (129)
322 3b7x_A FK506-binding protein 6 96.4 0.0015 5.1E-08 62.4 3.1 79 561-640 23-101 (134)
323 2l2n_A Hyponastic leave 1; DSR 96.4 0.0064 2.2E-07 56.3 7.0 69 13-94 14-87 (103)
324 3eld_A Methyltransferase; flav 96.3 0.0046 1.6E-07 67.2 6.8 118 679-813 66-190 (300)
325 1uil_A Double-stranded RNA-bin 96.3 0.0063 2.1E-07 57.3 6.5 64 17-93 27-98 (113)
326 1whn_A Hypothetical protein ri 96.2 0.0069 2.4E-07 58.3 6.6 68 14-96 24-96 (128)
327 3ufb_A Type I restriction-modi 96.2 0.017 5.8E-07 66.9 11.0 121 683-815 206-364 (530)
328 2khx_A Ribonuclease 3; drosha, 96.2 0.0023 7.9E-08 57.3 3.0 38 57-94 39-76 (85)
329 1qu6_A Protein kinase PKR; dsR 96.1 0.012 4.2E-07 58.8 8.3 68 17-96 14-84 (179)
330 2wk1_A NOVP; transferase, O-me 96.1 0.019 6.5E-07 61.7 10.0 104 693-812 105-242 (282)
331 1whq_A RNA helicase A; double- 96.1 0.0095 3.2E-07 54.8 6.5 65 16-93 6-74 (99)
332 2if4_A ATFKBP42; FKBP-like, al 96.0 0.005 1.7E-07 65.8 5.2 79 561-640 46-125 (338)
333 3lkz_A Non-structural protein 96.0 0.033 1.1E-06 60.8 11.3 123 677-816 77-207 (321)
334 2pbc_A FK506-binding protein 2 95.9 0.0046 1.6E-07 55.7 3.7 63 577-640 3-65 (102)
335 1x47_A DGCR8 protein; structur 95.9 0.0079 2.7E-07 55.2 5.2 69 13-95 13-85 (98)
336 2awg_A 38 kDa FK-506 binding p 95.8 0.0099 3.4E-07 55.2 5.7 73 563-640 11-85 (118)
337 1kt0_A FKBP51, 51 kDa FK506-bi 95.8 0.0063 2.2E-07 67.8 4.7 78 563-641 30-107 (457)
338 1u79_A FKBP-type peptidyl-prol 95.7 0.01 3.6E-07 56.0 5.4 79 560-640 8-92 (129)
339 3tka_A Ribosomal RNA small sub 95.6 0.012 4.2E-07 65.0 6.3 82 684-781 47-134 (347)
340 3uf8_A Ubiquitin-like protein 95.6 0.014 4.7E-07 60.1 6.3 78 561-640 101-178 (209)
341 3p8z_A Mtase, non-structural p 95.5 0.046 1.6E-06 58.1 9.6 121 680-816 64-189 (267)
342 1i4w_A Mitochondrial replicati 95.5 0.024 8.2E-07 62.8 7.9 71 684-770 42-118 (353)
343 1g60_A Adenine-specific methyl 95.5 0.024 8.1E-07 59.2 7.5 45 693-740 211-255 (260)
344 1q1c_A FK506-binding protein 4 95.4 0.019 6.4E-07 61.5 6.5 77 563-640 50-126 (280)
345 2d9f_A FK506-binding protein 8 95.3 0.019 6.4E-07 54.9 5.4 74 562-640 14-89 (135)
346 1t4n_A Ribonuclease III; DSRBD 95.3 0.016 5.5E-07 53.2 4.7 57 24-93 17-74 (94)
347 2jwx_A FKBP38NTD, FK506-bindin 94.9 0.03 1E-06 55.4 5.9 75 561-640 39-115 (157)
348 2yt4_A Protein DGCR8; DSRBD, R 94.8 0.048 1.6E-06 57.0 7.4 70 11-94 17-90 (232)
349 2l3j_A Double-stranded RNA-spe 94.7 0.072 2.5E-06 55.7 8.5 67 15-95 160-226 (236)
350 1jvw_A Macrophage infectivity 94.6 0.022 7.6E-07 56.8 4.2 78 560-640 33-110 (167)
351 2nug_A Ribonuclease III, RNAse 94.6 0.046 1.6E-06 56.1 6.7 66 15-93 149-218 (221)
352 1rjd_A PPM1P, carboxy methyl t 94.6 0.21 7.2E-06 54.7 12.3 128 681-810 80-229 (334)
353 2uyo_A Hypothetical protein ML 94.6 0.94 3.2E-05 49.0 17.1 124 680-816 85-221 (310)
354 1o0w_A Ribonuclease III, RNAse 94.5 0.063 2.2E-06 56.4 7.5 68 15-94 178-249 (252)
355 2px2_A Genome polyprotein [con 94.5 0.11 3.8E-06 55.6 9.2 121 678-816 57-186 (269)
356 1t4o_A Ribonuclease III; RNT1P 94.4 0.045 1.6E-06 52.1 5.4 65 16-93 8-76 (117)
357 3jxv_A 70 kDa peptidyl-prolyl 94.0 0.0098 3.4E-07 65.3 0.0 80 560-640 7-86 (356)
358 1hxv_A Trigger factor; FKBP fo 93.9 0.064 2.2E-06 50.0 5.3 63 579-645 29-91 (113)
359 4dt4_A FKBP-type 16 kDa peptid 93.4 0.056 1.9E-06 54.2 4.3 60 580-640 25-84 (169)
360 2cqk_A C-MPL binding protein; 93.3 0.028 9.7E-07 52.2 1.8 85 102-208 10-94 (101)
361 2l3j_A Double-stranded RNA-spe 93.2 0.14 4.7E-06 53.6 7.0 66 17-96 8-73 (236)
362 1qu6_A Protein kinase PKR; dsR 92.8 0.093 3.2E-06 52.4 4.9 66 14-92 102-170 (179)
363 1fd9_A Protein (macrophage inf 92.7 0.12 4E-06 53.5 5.7 77 560-640 102-178 (213)
364 3jxv_A 70 kDa peptidyl-prolyl 92.5 0.11 3.9E-06 56.8 5.5 75 565-640 245-320 (356)
365 1q6h_A FKBP-type peptidyl-prol 92.4 0.16 5.4E-06 53.0 6.1 74 563-640 120-193 (224)
366 3pr9_A FKBP-type peptidyl-prol 92.3 0.099 3.4E-06 51.7 4.3 58 581-640 3-73 (157)
367 3r24_A NSP16, 2'-O-methyl tran 92.2 0.46 1.6E-05 52.0 9.5 115 680-822 90-226 (344)
368 1g55_A DNA cytosine methyltran 91.7 0.11 3.7E-06 56.8 4.2 70 696-782 3-75 (343)
369 2a11_A Ribonuclease III, RNAse 91.6 0.034 1.2E-06 57.9 0.0 38 57-94 194-231 (242)
370 3g7u_A Cytosine-specific methy 91.3 0.27 9.3E-06 54.6 6.8 68 696-782 3-78 (376)
371 2kr7_A FKBP-type peptidyl-prol 91.1 0.16 5.5E-06 49.6 4.2 60 580-640 7-66 (151)
372 3n3w_A Ribonuclease III; nucle 90.9 0.043 1.5E-06 57.7 0.0 37 57-93 210-246 (248)
373 3c4b_A Endoribonuclease dicer; 90.9 0.26 8.9E-06 51.8 5.9 64 15-93 199-262 (265)
374 3oe2_A Peptidyl-prolyl CIS-tra 90.8 0.097 3.3E-06 54.5 2.5 74 560-640 113-186 (219)
375 3prb_A FKBP-type peptidyl-prol 89.9 0.22 7.4E-06 52.3 4.2 62 581-646 3-77 (231)
376 1ix5_A FKBP; ppiase, isomerase 89.2 0.14 4.9E-06 49.9 2.2 60 580-640 2-74 (151)
377 2kfw_A FKBP-type peptidyl-prol 88.6 0.27 9.1E-06 50.4 3.7 59 580-640 3-61 (196)
378 2c7p_A Modification methylase 88.6 1 3.6E-05 48.9 8.6 67 695-782 11-78 (327)
379 1q1c_A FK506-binding protein 4 87.8 0.58 2E-05 50.0 5.8 70 564-640 168-240 (280)
380 2py6_A Methyltransferase FKBM; 87.7 0.81 2.8E-05 51.1 7.1 48 693-740 225-273 (409)
381 2vz8_A Fatty acid synthase; tr 87.3 0.21 7.2E-06 67.5 2.6 104 694-814 1240-1349(2512)
382 2kou_A Dicer-like protein 4; A 87.2 0.74 2.5E-05 42.5 5.4 60 29-103 26-92 (102)
383 3rv0_A K. polysporus DCR1; RNA 86.9 0.12 4.2E-06 56.9 0.0 41 53-95 281-321 (341)
384 2yt4_A Protein DGCR8; DSRBD, R 86.4 0.43 1.5E-05 49.9 3.7 34 57-93 164-197 (232)
385 1p5q_A FKBP52, FK506-binding p 86.4 0.78 2.7E-05 48.7 5.9 70 564-640 25-97 (336)
386 2k8i_A SLYD, peptidyl-prolyl C 86.3 0.37 1.3E-05 48.2 3.1 59 581-641 4-62 (171)
387 3fwz_A Inner membrane protein 86.1 3 0.0001 38.9 9.1 100 696-822 8-114 (140)
388 1lss_A TRK system potassium up 85.6 9.5 0.00032 34.3 12.0 100 695-820 4-109 (140)
389 1boo_A Protein (N-4 cytosine-s 83.5 1.3 4.5E-05 47.8 6.0 45 693-740 251-295 (323)
390 3ius_A Uncharacterized conserv 81.5 12 0.0004 38.1 12.0 93 696-814 6-104 (286)
391 3cgm_A SLYD, peptidyl-prolyl C 81.0 1.1 3.7E-05 44.3 3.8 53 581-640 4-56 (158)
392 1zkd_A DUF185; NESG, RPR58, st 79.7 5.5 0.00019 44.7 9.4 78 694-789 80-163 (387)
393 1eg2_A Modification methylase 79.5 2.2 7.4E-05 46.3 6.0 52 685-740 234-288 (319)
394 3llv_A Exopolyphosphatase-rela 79.3 11 0.00038 34.6 10.0 101 695-822 6-112 (141)
395 1x47_A DGCR8 protein; structur 79.2 1.6 5.6E-05 39.8 4.1 77 388-503 12-88 (98)
396 4h0n_A DNMT2; SAH binding, tra 78.4 1.2 4.3E-05 48.5 3.7 69 696-781 4-75 (333)
397 2voo_A Lupus LA protein; RNA-b 78.3 1 3.5E-05 45.1 2.8 87 102-208 8-95 (193)
398 3ubt_Y Modification methylase 77.9 3.9 0.00013 43.4 7.3 66 696-781 1-67 (331)
399 3qv2_A 5-cytosine DNA methyltr 77.8 1.8 6.2E-05 47.2 4.7 70 695-782 10-83 (327)
400 4f3n_A Uncharacterized ACR, CO 77.5 6.8 0.00023 44.6 9.4 89 685-789 128-221 (432)
401 2qrv_A DNA (cytosine-5)-methyl 76.4 3.5 0.00012 44.3 6.4 70 694-782 15-90 (295)
402 3two_A Mannitol dehydrogenase; 76.3 3.9 0.00013 43.8 6.8 47 689-737 171-218 (348)
403 3adg_A F21M12.9 protein; HYL1, 75.4 2.8 9.7E-05 35.8 4.4 69 393-498 4-72 (73)
404 3me5_A Cytosine-specific methy 74.5 2.9 0.0001 48.1 5.5 79 676-770 63-147 (482)
405 3c85_A Putative glutathione-re 73.1 14 0.00047 35.6 9.1 93 695-815 39-141 (183)
406 2oo3_A Protein involved in cat 72.6 1.6 5.3E-05 47.2 2.5 77 693-786 90-170 (283)
407 1ekz_A DSRBDIII, maternal effe 72.1 4.2 0.00014 35.0 4.7 68 392-498 7-74 (76)
408 3l9w_A Glutathione-regulated p 70.4 11 0.00038 42.2 8.8 101 695-822 4-111 (413)
409 1id1_A Putative potassium chan 69.6 33 0.0011 32.0 10.8 104 695-822 3-114 (153)
410 2ew2_A 2-dehydropantoate 2-red 67.1 49 0.0017 33.9 12.4 101 696-815 4-109 (316)
411 3l4b_C TRKA K+ channel protien 66.8 27 0.00092 34.6 10.0 101 697-823 2-109 (218)
412 3iei_A Leucine carboxyl methyl 65.5 79 0.0027 34.6 14.1 119 694-813 90-229 (334)
413 1t11_A Trigger factor, TF; hel 65.3 4.4 0.00015 45.2 4.3 61 580-644 161-221 (392)
414 3p2y_A Alanine dehydrogenase/p 61.5 6.3 0.00022 44.1 4.6 41 694-737 183-225 (381)
415 1di2_A XLRBPA, double stranded 61.5 6.8 0.00023 33.0 3.8 68 393-498 1-68 (69)
416 3vyw_A MNMC2; tRNA wobble urid 60.3 24 0.00081 38.5 8.7 137 668-812 62-224 (308)
417 1kt0_A FKBP51, 51 kDa FK506-bi 59.1 11 0.00038 41.7 6.0 62 572-640 154-218 (457)
418 2g1u_A Hypothetical protein TM 58.6 37 0.0013 31.8 8.8 99 693-817 17-122 (155)
419 3oig_A Enoyl-[acyl-carrier-pro 58.6 86 0.0029 31.6 12.2 77 694-785 6-97 (266)
420 3goh_A Alcohol dehydrogenase, 57.7 11 0.00039 39.5 5.6 47 688-737 136-183 (315)
421 2aef_A Calcium-gated potassium 57.6 45 0.0015 33.3 9.7 100 695-823 9-115 (234)
422 2l2n_A Hyponastic leave 1; DSR 57.0 11 0.00036 34.7 4.5 70 392-498 17-86 (103)
423 3ggo_A Prephenate dehydrogenas 57.0 45 0.0015 35.6 10.1 93 695-813 33-127 (314)
424 3adj_A F21M12.9 protein; HYL1, 57.0 7 0.00024 33.7 3.1 68 394-498 6-73 (76)
425 3qiv_A Short-chain dehydrogena 55.8 52 0.0018 32.9 9.8 76 694-785 8-96 (253)
426 2dph_A Formaldehyde dismutase; 55.4 11 0.00037 41.2 5.1 49 688-737 179-228 (398)
427 1uil_A Double-stranded RNA-bin 55.3 8.1 0.00028 36.1 3.5 87 379-499 13-99 (113)
428 1w26_A Trigger factor, TF; cha 55.1 5.9 0.0002 44.7 3.0 61 579-643 157-217 (432)
429 3adl_A RISC-loading complex su 54.6 11 0.00039 33.6 4.2 75 386-498 9-83 (88)
430 1f8f_A Benzyl alcohol dehydrog 53.1 14 0.00046 39.9 5.3 49 688-737 184-233 (371)
431 2db2_A KIAA0890 protein; DSRM 53.1 25 0.00086 33.3 6.3 92 13-113 14-111 (119)
432 1whn_A Hypothetical protein ri 52.4 17 0.00056 34.9 5.2 81 378-498 12-93 (128)
433 3ucx_A Short chain dehydrogena 52.3 47 0.0016 33.8 9.0 75 693-783 9-96 (264)
434 2dix_A Interferon-inducible do 52.0 16 0.00054 32.2 4.6 69 391-498 7-75 (84)
435 2f1k_A Prephenate dehydrogenas 51.9 66 0.0023 32.8 10.1 87 697-813 2-90 (279)
436 3c24_A Putative oxidoreductase 51.1 63 0.0021 33.4 9.8 87 696-814 12-101 (286)
437 4g65_A TRK system potassium up 51.0 39 0.0013 38.3 8.8 98 695-818 3-107 (461)
438 1uhz_A Staufen (RNA binding pr 50.5 11 0.00037 33.8 3.3 70 391-498 5-74 (89)
439 3s2e_A Zinc-containing alcohol 50.1 21 0.00072 37.9 6.1 48 688-737 160-208 (340)
440 3pvc_A TRNA 5-methylaminomethy 49.8 15 0.00052 43.2 5.5 122 694-816 58-213 (689)
441 4dvj_A Putative zinc-dependent 49.5 31 0.0011 37.2 7.5 42 694-737 171-215 (363)
442 1lnq_A MTHK channels, potassiu 49.0 60 0.0021 34.4 9.5 98 695-823 115-221 (336)
443 1pl8_A Human sorbitol dehydrog 48.1 23 0.0008 37.9 6.2 49 688-737 165-214 (356)
444 3ioy_A Short-chain dehydrogena 48.0 48 0.0016 35.1 8.5 79 694-786 7-98 (319)
445 3tjr_A Short chain dehydrogena 48.0 40 0.0014 35.2 7.8 77 693-785 29-118 (301)
446 3lyl_A 3-oxoacyl-(acyl-carrier 47.9 50 0.0017 32.9 8.2 76 694-785 4-92 (247)
447 1yqd_A Sinapyl alcohol dehydro 47.7 26 0.00088 37.8 6.5 46 690-737 182-229 (366)
448 4fn4_A Short chain dehydrogena 46.7 44 0.0015 34.9 7.9 76 693-784 5-93 (254)
449 2cpn_A TAR RNA-binding protein 46.5 13 0.00046 33.1 3.3 69 392-498 16-84 (89)
450 3o38_A Short chain dehydrogena 46.2 57 0.002 32.9 8.4 77 694-785 21-111 (266)
451 3pk0_A Short-chain dehydrogena 45.7 33 0.0011 35.0 6.6 78 693-785 8-98 (262)
452 1zcj_A Peroxisomal bifunctiona 45.5 1.2E+02 0.004 34.3 11.6 107 695-812 37-148 (463)
453 3ps9_A TRNA 5-methylaminomethy 45.2 28 0.00096 40.7 6.7 121 695-815 67-220 (676)
454 1y1p_A ARII, aldehyde reductas 45.2 1E+02 0.0035 31.6 10.3 80 694-788 10-96 (342)
455 3tos_A CALS11; methyltransfera 45.1 1.1E+02 0.0039 32.2 10.7 109 694-811 69-214 (257)
456 4e12_A Diketoreductase; oxidor 44.8 29 0.001 36.1 6.2 107 696-814 5-121 (283)
457 3d4o_A Dipicolinate synthase s 43.9 80 0.0027 33.1 9.4 91 692-814 152-244 (293)
458 2dpo_A L-gulonate 3-dehydrogen 43.7 49 0.0017 35.7 7.8 107 695-813 6-122 (319)
459 1kol_A Formaldehyde dehydrogen 43.7 29 0.001 37.6 6.2 48 689-737 180-228 (398)
460 2cf5_A Atccad5, CAD, cinnamyl 43.5 18 0.00062 38.8 4.4 45 690-736 175-221 (357)
461 1yb1_A 17-beta-hydroxysteroid 42.7 71 0.0024 32.5 8.6 77 693-785 29-118 (272)
462 3swr_A DNA (cytosine-5)-methyl 42.6 26 0.00088 43.9 6.1 42 695-738 540-582 (1002)
463 4e6p_A Probable sorbitol dehyd 42.5 60 0.002 32.9 7.9 74 693-785 6-92 (259)
464 4eso_A Putative oxidoreductase 42.4 56 0.0019 33.2 7.7 74 693-785 6-92 (255)
465 1ae1_A Tropinone reductase-I; 42.3 59 0.002 33.2 7.9 76 694-785 20-109 (273)
466 2ae2_A Protein (tropinone redu 42.0 60 0.0021 32.8 7.8 76 694-785 8-97 (260)
467 3o26_A Salutaridine reductase; 41.9 59 0.002 33.1 7.8 78 694-786 11-102 (311)
468 2vhw_A Alanine dehydrogenase; 41.4 28 0.00096 38.2 5.6 43 693-738 166-210 (377)
469 2g5c_A Prephenate dehydrogenas 41.1 1.5E+02 0.0051 30.3 10.8 90 697-813 3-95 (281)
470 1bg6_A N-(1-D-carboxylethyl)-L 41.0 74 0.0025 33.5 8.6 103 696-815 5-110 (359)
471 3ado_A Lambda-crystallin; L-gu 40.6 3.4E+02 0.012 29.4 13.9 162 694-874 5-183 (319)
472 3f9i_A 3-oxoacyl-[acyl-carrier 40.5 62 0.0021 32.3 7.6 74 693-785 12-94 (249)
473 3e8x_A Putative NAD-dependent 40.2 59 0.002 32.0 7.3 72 694-787 20-96 (236)
474 2rhc_B Actinorhodin polyketide 39.9 83 0.0028 32.2 8.6 76 694-785 21-109 (277)
475 2rir_A Dipicolinate synthase, 39.9 57 0.002 34.3 7.5 90 693-814 155-246 (300)
476 4da9_A Short-chain dehydrogena 39.6 82 0.0028 32.5 8.5 78 692-785 26-117 (280)
477 1uuf_A YAHK, zinc-type alcohol 39.5 31 0.0011 37.3 5.5 46 690-737 190-236 (369)
478 3v2h_A D-beta-hydroxybutyrate 39.0 80 0.0027 32.6 8.4 79 693-786 23-115 (281)
479 1e3j_A NADP(H)-dependent ketos 39.0 40 0.0014 36.0 6.2 48 688-737 162-210 (352)
480 3d1l_A Putative NADP oxidoredu 38.8 1.1E+02 0.0038 30.9 9.3 91 696-816 11-104 (266)
481 2jah_A Clavulanic acid dehydro 38.7 75 0.0026 31.9 7.9 76 694-785 6-94 (247)
482 3fpc_A NADP-dependent alcohol 38.6 41 0.0014 35.9 6.2 49 688-737 160-209 (352)
483 3uve_A Carveol dehydrogenase ( 38.6 77 0.0026 32.5 8.1 77 693-785 9-114 (286)
484 3t7c_A Carveol dehydrogenase; 37.7 77 0.0026 32.9 8.0 77 693-785 26-127 (299)
485 4egf_A L-xylulose reductase; s 37.7 42 0.0014 34.3 5.9 78 693-785 18-108 (266)
486 2cfc_A 2-(R)-hydroxypropyl-COM 37.7 1.1E+02 0.0038 30.1 8.9 75 695-784 2-89 (250)
487 3uog_A Alcohol dehydrogenase; 37.5 43 0.0015 36.0 6.2 48 688-737 183-231 (363)
488 3t4x_A Oxidoreductase, short c 37.1 68 0.0023 32.6 7.4 78 694-785 9-95 (267)
489 3rku_A Oxidoreductase YMR226C; 36.6 78 0.0027 32.9 7.9 81 694-785 32-125 (287)
490 4g81_D Putative hexonate dehyd 36.0 62 0.0021 33.9 6.9 77 693-785 7-96 (255)
491 1cdo_A Alcohol dehydrogenase; 36.0 34 0.0012 36.8 5.1 49 688-737 186-235 (374)
492 1fmc_A 7 alpha-hydroxysteroid 35.8 56 0.0019 32.4 6.3 76 694-785 10-98 (255)
493 3sx2_A Putative 3-ketoacyl-(ac 35.7 88 0.003 31.8 7.9 80 693-788 11-115 (278)
494 3grk_A Enoyl-(acyl-carrier-pro 35.4 86 0.0029 32.6 7.9 76 693-785 29-119 (293)
495 3h7a_A Short chain dehydrogena 35.3 77 0.0026 32.1 7.4 76 694-785 6-93 (252)
496 1pjc_A Protein (L-alanine dehy 35.3 54 0.0019 35.6 6.6 42 694-738 166-209 (361)
497 2jhf_A Alcohol dehydrogenase E 35.2 36 0.0012 36.7 5.1 49 688-737 185-234 (374)
498 4dio_A NAD(P) transhydrogenase 35.2 15 0.00053 41.4 2.3 41 694-737 189-231 (405)
499 3r1i_A Short-chain type dehydr 35.1 58 0.002 33.6 6.5 78 693-786 30-120 (276)
500 1v3u_A Leukotriene B4 12- hydr 35.0 37 0.0013 35.7 5.2 47 688-736 139-187 (333)
No 1
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-275 Score=2393.43 Aligned_cols=878 Identities=52% Similarity=0.835 Sum_probs=713.3
Q ss_pred CCCCcccccccCCCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHH
Q 002345 3 NGGLSVVAVRKMKLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQ 82 (933)
Q Consensus 3 ~~~~~~~~~~~~~~tpka~~~q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq 82 (933)
|+|+ +|+|+|||||||||||+|||||||||||++|+|||||||||||||||||+||||||+||||+|||||||||
T Consensus 9 ~~~~-----~~~~~~pk~~~~q~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq 83 (950)
T 3htx_A 9 MAGG-----GKHTPTPKAIIHQKFGAKASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQ 83 (950)
T ss_dssp -----------CCCCCHHHHHHTTGGGSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHH
T ss_pred ccCC-----CCCCCCHHHHHHHHhCcceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHH
Confidence 5666 69999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeeccccccc
Q 002345 83 SAAEKALEKLGIDPSPNVPSAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANL 162 (933)
Q Consensus 83 ~aa~~al~k~g~~~~~~~~~~~e~~~~l~~~~~~~f~~~~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ 162 (933)
+||++||+||||+|+|++||++|+||+||+||+|+|+|||++++|||+|||||||||+|||||+||+||||+||+||+|+
T Consensus 84 ~aa~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ 163 (950)
T 3htx_A 84 SAAELALDKLGIRPQNDDLTVDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSR 163 (950)
T ss_dssp HHHHHHHTTTTSTTTSCCCCHHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhCCCccccCcchhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccchHHHHHHHHHHhhccCCcEEeecCceeeeecCCCChhhhhhhhhhccCCCCcEEEEEEEecccccccee
Q 002345 163 CKLINPKVESSHLLVLTYIMRAATRLSEFVVTSEGQLSIWRKDPYPPEIKESSIIQQSESPDSICIEAIHIPSSLEMAVH 242 (933)
Q Consensus 163 ck~~~~~~e~~p~~~~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~ 242 (933)
||+|||+||+|||||+|||||||++|||++ ||++| |||||+|||||||++++++||+++|+|+||||||||++|++|+
T Consensus 164 ck~~~~~~e~~p~~~~~~~~~a~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (950)
T 3htx_A 164 CKIINPSVESDPFLAISYVMKAAAKLADYI-VASPH-GLRRKNAYPSEIVEALATHVSDSLHSREVAAVYIPCIDEEVVE 241 (950)
T ss_dssp HHHHCTHHHHCTHHHHHHHHHHHHHCCSSE-EEETT-EEEESSCCCHHHHHHHHHTCCCC---EEEEEEEECSSTTSCCE
T ss_pred hhhcCcccccChHHHHHHHHHHhhcCCCcE-EeCCc-ccccCCCCCHHHHHHHHHHhcCCCcceEEEEEEeeccccccee
Confidence 999999999999999999999999999966 89999 9999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCcchHHHHHHhcCCCCCCeEEEEeeccCCCc--ceEEeeecCccccccccCC---CCCccccccccCCCCCc
Q 002345 243 PVTLNVSSTGYYLDVIARNLDQTDGNKILVSRTIGKASS--EMRLYFAAPKSYLLDLSSD---LPNVEEVVDFEGSLNPR 317 (933)
Q Consensus 243 ~~~l~~~~~~~y~~~ia~~l~~~d~~~v~~sr~~~k~~~--~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~n~r 317 (933)
+|||||||++||||+||++||++|+|||||||||||||| ||||||+||| +++|++|+ ++|++| +|+||++|+|
T Consensus 242 ~~~~~~~~~~~y~~~~a~~l~~~d~~~~~~sr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~n~r 319 (950)
T 3htx_A 242 LDTLYISSNRHYLDSIAERLGLKDGNQVMISRMFGKASCGSECRLYSEIPK-KYLDNSSDASGTSNEDS-SHIVKSRNAR 319 (950)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSCSSSEEECCCBCHHHHSSCBEEEEECCH-HHHCCC-------------CCCCCBCHH
T ss_pred eeEEEecCCcchHHHHHHHhCCCccceEEEEeeccCCCCCcceeEEEecch-hhhhhhhcccccccccc-cccccccccc
Confidence 999999999999999999999999999999999999999 9999999999 66777777 999999 9999999999
Q ss_pred cccccccccccceeeeeccceeecCCccccccchhhhhhhhhccCCCcccccchhhhhhhcCCcceeeccccCCCChhhH
Q 002345 318 ASYLYGQDIYGDAILASIGYTRKSEGLFHEDITLQSYYRMLIHLTPSGVYKLSREAILTAELPMAFTTRTNWRGSFPREM 397 (933)
Q Consensus 318 as~~~~~~i~g~ai~a~~g~~~~~~~l~~~~~~~~~~~r~~~~~~p~g~yk~sr~~~~~a~lp~~~t~~~~w~g~~pr~~ 397 (933)
|||||||+||||||||+|||||||++||||||||+|||||||||+|||||||||+||||||||++||||+||||+|||||
T Consensus 320 a~~~~~~~i~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~~~~~p~g~~k~sr~~~~~a~lp~~~t~~~~w~g~~pr~~ 399 (950)
T 3htx_A 320 ASYICGQDIHGDAILASVGYRWKSDDLDYDDVTVNSFYRICCGMSPNGIYKISRQAVIAAQLPFAFTTKSNWRGPLPREI 399 (950)
T ss_dssp HHHHHTSCCBSCEEEEEEEECSSCSSEEEECCCHHHHHHHHHTTSHHHHHHHHHTCTTTBCCCSCCCCTTTCCSSCHHHH
T ss_pred ceeeecccccchhhhhhcCccccccccccccchhhhhHHHHhccCCCcceecchhhhhhhcCCcceecccccCCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCc------eeEEEEEeeccCCcce
Q 002345 398 LFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDN------VRCEVKIFSKSRDPIL 471 (933)
Q Consensus 398 l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------f~c~v~~~s~~~~~~~ 471 (933)
||+|||||||+||+|+++++|+|++|+++||++++ ++++++++| ||+|+++++| |||||||+||+|||||
T Consensus 400 l~~fc~~~~l~~~~~~~~~~~~k~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~f~c~~~~~~~~~~~~~ 475 (950)
T 3htx_A 400 LGLFCHQHRLAEPILSSSTAPVKSLSDIFRSHKKL---KVSGVDDAN-ENLSRQKEDTPGLGHGFRCEVKIFTKSQDLVL 475 (950)
T ss_dssp HHHHHHTTTCCCCEEECCC------------------------------------------------CEEEEEETTEEEE
T ss_pred HHHHHHHhhcCcceeeeccCccccccccccccccc---cccccchhh-hcCCcccCCCCCcccceEEEEEEEecccchhh
Confidence 99999999999999999999999999999999999 778888888 9999999988 9999999999999999
Q ss_pred ecCchhhhhhhhhhHhhhhhHHHHHHHhhhCCCCCCccccccccCcCCeeeccchhhhhhccccchhccccccccccccc
Q 002345 472 ECSPKEFYKKQNESIENASLKVLSWLNAYFKDPDIPLEKLNNLVGALDIQCYPQNFFKKFSSYRFIHNVQQRKMGEKLLQ 551 (933)
Q Consensus 472 ~~~~~~~~~~~~dai~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (933)
||||+++|+||||||||||||||+|||+|||+||||+||||+++|++||+|+|+||+|||+|||| |
T Consensus 476 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 541 (950)
T 3htx_A 476 ECSPRKFYEKENDAIQNASLKALLWFSKFFADLDVDGEQSCDTDDDQDTKSSSPNVFAAPPILQK--------------E 541 (950)
T ss_dssp EECCSCCCSSHHHHHHHHHHHHHHHHHTSSCCC-----------------------------------------------
T ss_pred ccChhhhhhhccHHHHHHHHHHHHHHHHHHhccCCchhhcccccccccccccchhhhhhhhcccc--------------c
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cccccccccCCCCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhH---------------------------H
Q 002345 552 ANSINTLNAIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKE---------------------------L 604 (933)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~---------------------------~ 604 (933)
++|+|++|+++|+++++++| +||||+||||+|+|++|||++|| +
T Consensus 542 ~~~~~~~~~~~~~~~~~~~i---------~~gs~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (950)
T 3htx_A 542 HSSESKNTNVLSAEKRVQSI---------TNGSVVSICYSLSLAVDPEYSSDGESPREDNESNEEMESEYSANCESSVEP 612 (950)
T ss_dssp -CCCEECC----------CC---------CTTEEEEEEEEEEEEECC----------------------------CCCEE
T ss_pred cccccccccccccceeeecc---------CCCcEEEEEEEEEEEecCcccccccccccccccccccccccccchhhhhhc
Confidence 99999999999999999999 99999999999999999999999 9
Q ss_pred hhcccceeEeecccccchhhHHhhhhccccCCccccccCC--chhhHhhhccccccccccc-----------------cc
Q 002345 605 LESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELP--PQELILAAADDSARTFSLL-----------------SS 665 (933)
Q Consensus 605 ~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~r~lP--~~dlilAAa~Ds~~dl~~L-----------------s~ 665 (933)
||||+||||+||+++|+.||+.+|+||++||+.+|++.+| +++++++|..+..+....+ ..
T Consensus 613 ies~~e~~fe~g~g~~~~~le~vV~qms~gqT~~F~~~~Pd~p~eLLLaAa~ep~R~~slLsre~~fEyals~lay~dea 692 (950)
T 3htx_A 613 IESNEEIEFEVGTGSMNPHIESEVTQMTVGEYASFKMTPPDAAEALILAVGSDTVRIRSLLSERPCLNYNILLLGVKGPS 692 (950)
T ss_dssp EEEEEEEEEEETTTCBCHHHHHHHTTCCTTCEEEEEESSCCSCHHHHHHHCSCHHHHHHHTTSCEEEEEEEEEEEEECSC
T ss_pred ccccHHHHHHHhcCCccchhhheeeeccccceeEEeccCcchHHHHHHHHhhcchhhhhhcchhhhhhHHhhhhccccch
Confidence 9999999999999999999999999999999999999999 8889998887766542211 11
Q ss_pred hhhhhhcccCCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhc
Q 002345 666 KDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK 745 (933)
Q Consensus 666 eer~e~~~F~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~ 745 (933)
.++++...|.||++.+|++++++.+...++.+|||||||+|.++..|++.+++..+|+|||+|+.|++.|++++......
T Consensus 693 ~p~me~gtFsPPL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnA 772 (950)
T 3htx_A 693 EERMEAAFFKPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNK 772 (950)
T ss_dssp CCCCCCCCSSSCHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTT
T ss_pred hhHHhhCcCCchHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccch
Confidence 24555667899999999999999998888999999999999999999998744569999999999999999877643211
Q ss_pred ccccCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhh
Q 002345 746 KLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKS 825 (933)
Q Consensus 746 ~~~~~~Pr~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~efNs~f~~l 825 (933)
.+.+..+++++++|+.++++.++.||+|+|.+++||++++....+.++++++||||.++|++||.+||..|..+
T Consensus 773 ------kr~gl~nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG~LIISTPN~eyN~lF~~L 846 (950)
T 3htx_A 773 ------EACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVSTPNYEFNTILQRS 846 (950)
T ss_dssp ------TCSSCSEEEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCSEEEEEECBGGGHHHHTCC
T ss_pred ------hhcCCCceEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCCEEEEEecCchhhhhhhhc
Confidence 02345689999999999998889999999999999999777667777899999999999999999999998765
Q ss_pred ccCcCCCCCcchhhhccccccCCCcccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCCCCCCccceeEEEecCCCCCCc
Q 002345 826 SSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRTPPEED 905 (933)
Q Consensus 826 ~~~g~~eYpdEp~g~~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsVEF~GVG~~p~~~~Gf~TQIAVF~R~~~~~~~ 905 (933)
.+.....+++. .....+|+.+|+|+|++++|+.|++.++.++||.|+|.|+|..+.++.|+++||+||+| ..+..+
T Consensus 847 np~tr~~dPd~---~~~~~fRh~DHrFEWTReEFr~Wae~LAer~GYsVefvGVGDg~ep~vG~~TQiAVFtR-~~~g~d 922 (950)
T 3htx_A 847 TPETQEENNSE---PQLPKFRNHDHKFEWTREQFNQWASKLGKRHNYSVEFSGVGGSGEVEPGFASQIAIFRR-EASSVE 922 (950)
T ss_dssp ---------------CCSSCSCSSCSCCBCHHHHHHHHHHHHHHTTEEEEEEEESSCSSSTTCCSEEEEEEEE-SCC---
T ss_pred ccccccccccc---cccccccccCcceeecHHHHHHHHHHHHHhcCcEEEEEccCCCCCCCCCCccEEEEEEE-CCCchh
Confidence 33322233332 23567999999999999999999999999999999999999987778999999999999 656666
Q ss_pred ccccCCCCcCceeEEEEecCCCC
Q 002345 906 DLLKDGDSAHHYKVIWEWDGNGL 928 (933)
Q Consensus 906 ~~~~~~~~~~~Yk~v~~w~~~~~ 928 (933)
.+.+.. -.+||.+|||.++..
T Consensus 923 ~l~e~~--~~~~~~~W~w~~~~~ 943 (950)
T 3htx_A 923 NVAESS--MQPYKVIWEWKKEDV 943 (950)
T ss_dssp --CCCC--CCCSCEEEEEECC--
T ss_pred hcchhh--cchHHHhcccCCccc
Confidence 665555 489999999988764
No 2
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.95 E-value=1.5e-27 Score=238.45 Aligned_cols=202 Identities=37% Similarity=0.613 Sum_probs=166.1
Q ss_pred CchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002345 676 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 755 (933)
Q Consensus 676 PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~ 755 (933)
.+++.+|++++.+.+...++.+|||||||+|.++..|++.+ +..+|+|+|+|+.+++.|++++....- +...
T Consensus 11 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~-------~~~~ 82 (219)
T 3jwg_A 11 LNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRL-------PEMQ 82 (219)
T ss_dssp -CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGS-------CHHH
T ss_pred CcchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhcc-------cccc
Confidence 47899999999999988888999999999999999999876 346999999999999999987642100 0001
Q ss_pred CccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCcCCCCCc
Q 002345 756 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPD 835 (933)
Q Consensus 756 ~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~efNs~f~~l~~~g~~eYpd 835 (933)
..+++++++|+...+...++||+|+|..+++|++++....+.+++.++|+||++++.+|+..++..|..+
T Consensus 83 ~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~---------- 152 (219)
T 3jwg_A 83 RKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNL---------- 152 (219)
T ss_dssp HTTEEEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT----------
T ss_pred CcceEEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhccc----------
Confidence 1279999999988877778999999999999999666566667799999999999999998877655332
Q ss_pred chhhhccccccCCCcccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCCCCCCccceeEEEecCCC
Q 002345 836 EKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRTP 901 (933)
Q Consensus 836 Ep~g~~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsVEF~GVG~~p~~~~Gf~TQIAVF~R~~~ 901 (933)
....+++.+|.++|++++|..|++.++.++||+|++.|+|.... ..|+++||+||+|...
T Consensus 153 -----~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~~~-~~g~~~qi~~~~~~~~ 212 (219)
T 3jwg_A 153 -----FEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGEIDD-EFGSPTQMGVFTLGAG 212 (219)
T ss_dssp ----------GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEEESCCCT-TSCCSEEEEEEEECC-
T ss_pred -----CcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEEecCCccc-cCCCCeEEEEEeccCC
Confidence 23457889999999999999999999999999999999998654 7999999999999654
No 3
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.95 E-value=6.5e-27 Score=233.94 Aligned_cols=201 Identities=37% Similarity=0.668 Sum_probs=162.2
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002345 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~ 756 (933)
+++.+|++++.+.+...++.+|||||||+|.++..|++.+ +..+|+|+|+|+.+++.|++++.... .+....
T Consensus 12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~-------~~~~~~ 83 (217)
T 3jwh_A 12 SLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLR-------LPRNQW 83 (217)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCC-------CCHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhc-------CCcccC
Confidence 7899999999999988888999999999999999999876 34699999999999999998764210 000011
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCcCCCCCcc
Q 002345 757 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDE 836 (933)
Q Consensus 757 ~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~efNs~f~~l~~~g~~eYpdE 836 (933)
.+++++++|+...+...++||+|+|..+++|++++....+.+++.++|+||++++.+|+..++..|..+
T Consensus 84 ~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~----------- 152 (217)
T 3jwh_A 84 ERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANL----------- 152 (217)
T ss_dssp TTEEEEECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-------------
T ss_pred cceEEEeCCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhccc-----------
Confidence 279999999987777778999999999999998666666777799999999999999998777766432
Q ss_pred hhhhccccccCCCcccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCCCCCCccceeEEEecCCC
Q 002345 837 KTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRTP 901 (933)
Q Consensus 837 p~g~~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsVEF~GVG~~p~~~~Gf~TQIAVF~R~~~ 901 (933)
....+++.+|.++|++++|..|++.++.++||+|++.|+|... +..|+++||++|.-++.
T Consensus 153 ----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~~~~g~~~-~~~g~~~q~~~~~~~~~ 212 (217)
T 3jwh_A 153 ----PAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQPIGEAD-PEVGSPTQMAVFIHRGH 212 (217)
T ss_dssp -------------CCSCBCHHHHHHHHHHHHHHSSEEEEECCCSCCC-SSSCCSEEEEEEEECCC
T ss_pred ----ccccccccccccccCHHHHHHHHHHHHHHcCceEEEEecCCcc-CCCCchheeEeeeeccc
Confidence 2356888999999999999999999999999999999999864 47999999999987553
No 4
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.68 E-value=5.9e-16 Score=154.84 Aligned_cols=168 Identities=15% Similarity=0.130 Sum_probs=118.4
Q ss_pred HHHHHHHHhh-cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 682 RVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 682 Rve~Ild~L~-~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
.++++.+.+. ..++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|+++.. . +++
T Consensus 29 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~--------------~--~v~ 89 (250)
T 2p7i_A 29 MHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLK--------------D--GIT 89 (250)
T ss_dssp HHHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSC--------------S--CEE
T ss_pred HHHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhh--------------C--CeE
Confidence 3455556554 3467799999999999999999987 589999999999999987632 1 799
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHH-HccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchh
Q 002345 761 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVL-SSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKT 838 (933)
Q Consensus 761 fi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~-rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~ 838 (933)
++++|+.++ ..+++||+|++..++||++ ++...+ +++. ++|||| .+++++||............ + .++...
T Consensus 90 ~~~~d~~~~-~~~~~fD~v~~~~~l~~~~-~~~~~l-~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-~--~~~~~~- 162 (250)
T 2p7i_A 90 YIHSRFEDA-QLPRRYDNIVLTHVLEHID-DPVALL-KRINDDWLAEGGRLFLVCPNANAVSRQIAVKM-G--IISHNS- 162 (250)
T ss_dssp EEESCGGGC-CCSSCEEEEEEESCGGGCS-SHHHHH-HHHHHTTEEEEEEEEEEEECTTCHHHHHHHHT-T--SSSSTT-
T ss_pred EEEccHHHc-CcCCcccEEEEhhHHHhhc-CHHHHH-HHHHHHhcCCCCEEEEEcCChHHHHHHHHHHc-C--ccccch-
Confidence 999999887 4567899999999999998 554555 4699 999999 89999999764322211100 0 000000
Q ss_pred hhccc-cccCCCcccccCHHHHHHHHHHHHHHcCcEEE-EEeecC
Q 002345 839 QLQSC-KFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVGG 881 (933)
Q Consensus 839 g~~~~-~fRh~DHkFeWTreEF~~Was~LA~r~GYsVE-F~GVG~ 881 (933)
.+. ......|...++++++.. ++++.||.+. ..++..
T Consensus 163 --~~~~~~~~~~~~~~~~~~~~~~----~l~~~Gf~~~~~~~~~~ 201 (250)
T 2p7i_A 163 --AVTEAEFAHGHRCTYALDTLER----DASRAGLQVTYRSGIFF 201 (250)
T ss_dssp --CCCHHHHHTTCCCCCCHHHHHH----HHHHTTCEEEEEEEEEE
T ss_pred --hcccccccccccccCCHHHHHH----HHHHCCCeEEEEeeeEe
Confidence 000 011345666789999995 4567899873 444443
No 5
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.68 E-value=3.6e-16 Score=160.31 Aligned_cols=159 Identities=15% Similarity=0.226 Sum_probs=116.1
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
.++.+++.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|++++.. .+.+++.+
T Consensus 25 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~------------~~~~~v~~ 89 (260)
T 1vl5_A 25 DLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEG------------NGHQQVEY 89 (260)
T ss_dssp CHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHH------------TTCCSEEE
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHh------------cCCCceEE
Confidence 34556777776788999999999999999999987 5999999999999999887652 23457999
Q ss_pred EEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhh
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQL 840 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~ 840 (933)
.++|+.++++.+++||+|++..+++|++ ++...|. ++.++|||| .+++.++....+..+.... .
T Consensus 90 ~~~d~~~l~~~~~~fD~V~~~~~l~~~~-d~~~~l~-~~~r~LkpgG~l~~~~~~~~~~~~~~~~~---------~---- 154 (260)
T 1vl5_A 90 VQGDAEQMPFTDERFHIVTCRIAAHHFP-NPASFVS-EAYRVLKKGGQLLLVDNSAPENDAFDVFY---------N---- 154 (260)
T ss_dssp EECCC-CCCSCTTCEEEEEEESCGGGCS-CHHHHHH-HHHHHEEEEEEEEEEEEEBCSSHHHHHHH---------H----
T ss_pred EEecHHhCCCCCCCEEEEEEhhhhHhcC-CHHHHHH-HHHHHcCCCCEEEEEEcCCCCCHHHHHHH---------H----
Confidence 9999999988888999999999999998 5555555 599999999 7777655332122221110 0
Q ss_pred ccccccCCCcccccCHHHHHHHHHHHHHHcCcEE
Q 002345 841 QSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV 874 (933)
Q Consensus 841 ~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsV 874 (933)
.....+...|...++.+++.. ++.+.||.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~----~l~~aGf~~ 184 (260)
T 1vl5_A 155 YVEKERDYSHHRAWKKSDWLK----MLEEAGFEL 184 (260)
T ss_dssp HHHHHHCTTCCCCCBHHHHHH----HHHHHTCEE
T ss_pred HHHHhcCccccCCCCHHHHHH----HHHHCCCeE
Confidence 001122334555678888885 445668866
No 6
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.65 E-value=3.1e-15 Score=150.56 Aligned_cols=150 Identities=15% Similarity=0.173 Sum_probs=114.7
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
.+++...+. ++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|+++. ...+++++
T Consensus 44 ~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~---------------~~~~~~~~ 103 (242)
T 3l8d_A 44 IPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKERG---------------EGPDLSFI 103 (242)
T ss_dssp HHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHTTT---------------CBTTEEEE
T ss_pred HHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhc---------------ccCCceEE
Confidence 344444443 67899999999999999999986 69999999999999997642 33579999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhc
Q 002345 763 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQ 841 (933)
Q Consensus 763 ~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~ 841 (933)
++|+.++++..++||+|++..+++|++ +....+. ++.++|+|| .+++++++..........
T Consensus 104 ~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~-~~~~~L~pgG~l~i~~~~~~~~~~~~~~---------------- 165 (242)
T 3l8d_A 104 KGDLSSLPFENEQFEAIMAINSLEWTE-EPLRALN-EIKRVLKSDGYACIAILGPTAKPRENSY---------------- 165 (242)
T ss_dssp ECBTTBCSSCTTCEEEEEEESCTTSSS-CHHHHHH-HHHHHEEEEEEEEEEEECTTCGGGGGGG----------------
T ss_pred EcchhcCCCCCCCccEEEEcChHhhcc-CHHHHHH-HHHHHhCCCeEEEEEEcCCcchhhhhhh----------------
Confidence 999999988888999999999999997 5555554 599999999 888888765432211110
Q ss_pred cccccCCCcccccCHHHHHHHHHHHHHHcCcEE
Q 002345 842 SCKFRNHDHKFEWTRDQFNCWATELAARHNYSV 874 (933)
Q Consensus 842 ~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsV 874 (933)
...+....|...++++++.. +..+.||.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~----~l~~~Gf~~ 194 (242)
T 3l8d_A 166 PRLYGKDVVCNTMMPWEFEQ----LVKEQGFKV 194 (242)
T ss_dssp GGGGTCCCSSCCCCHHHHHH----HHHHTTEEE
T ss_pred hhhccccccccCCCHHHHHH----HHHHcCCEE
Confidence 11233445666789999884 567789987
No 7
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.64 E-value=6.4e-16 Score=157.04 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=104.2
Q ss_pred ccCCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCC
Q 002345 673 LFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP 752 (933)
Q Consensus 673 ~F~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~P 752 (933)
.+..+......+.+++.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~------------ 99 (266)
T 3ujc_A 34 NYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYG--AHTHGIDICSNIVNMANERVS------------ 99 (266)
T ss_dssp TCCSTTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHTCC------------
T ss_pred CccccchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhh------------
Confidence 344455556666677777666788999999999999999998632 699999999999999987542
Q ss_pred CCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 753 CTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 753 r~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
...++++.++|+.++++..++||+|++..++||++++....+.+++.++|+|| .+++.+++.
T Consensus 100 --~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (266)
T 3ujc_A 100 --GNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCA 162 (266)
T ss_dssp --SCTTEEEEECCTTTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred --cCCCeEEEECccccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 11689999999999888889999999999999997555556666799999999 888887753
No 8
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.64 E-value=2.2e-15 Score=148.44 Aligned_cols=136 Identities=14% Similarity=0.157 Sum_probs=108.6
Q ss_pred CCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCC
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 774 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~ 774 (933)
+.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|+++. ++++++++|+.++++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~~~~~~ 101 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLG---HQIEGLEPATRLVELARQTH-----------------PSVTFHHGTITDLSDSPK 101 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTT---CCEEEECCCHHHHHHHHHHC-----------------TTSEEECCCGGGGGGSCC
T ss_pred CCeEEEecCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhC-----------------CCCeEEeCcccccccCCC
Confidence 7899999999999999999986 68999999999999997752 368999999999888888
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhccccccCCCcccc
Q 002345 775 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFE 853 (933)
Q Consensus 775 sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~~~fRh~DHkFe 853 (933)
.||+|++..+++|++.+....+.+++.++|+|| .+++++++.... .. ......+...
T Consensus 102 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~---~~-------------------~~~~~~~~~~ 159 (203)
T 3h2b_A 102 RWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSL---EP-------------------MYHPVATAYR 159 (203)
T ss_dssp CEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSC---EE-------------------ECCSSSCEEE
T ss_pred CeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCch---hh-------------------hhchhhhhcc
Confidence 999999999999998544455556799999999 888888875421 00 0111234556
Q ss_pred cCHHHHHHHHHHHHHHcCcEEEE
Q 002345 854 WTRDQFNCWATELAARHNYSVEF 876 (933)
Q Consensus 854 WTreEF~~Was~LA~r~GYsVEF 876 (933)
|+.+++.. +..+.||.+.-
T Consensus 160 ~~~~~~~~----~l~~~Gf~~~~ 178 (203)
T 3h2b_A 160 WPLPELAQ----ALETAGFQVTS 178 (203)
T ss_dssp CCHHHHHH----HHHHTTEEEEE
T ss_pred CCHHHHHH----HHHHCCCcEEE
Confidence 89999985 56778988844
No 9
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.63 E-value=2.8e-15 Score=157.75 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=102.1
Q ss_pred CCchHHHHHHHHHHHhh--cCCCCEEEEEcCCcChHHHHHhcCCC-CCceEEEEeCChHHHHHHHHHHhhhhhcccccCC
Q 002345 675 SPPLSKQRVEYALQHIK--ESCATTLVDFGCGSGSLLDSLLDYPT-ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV 751 (933)
Q Consensus 675 ~PPLy~qRve~Ild~L~--~~~g~rVLDIGCGtG~fL~~LAr~g~-~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~ 751 (933)
+-|.|.+..+.+...+. ..++.+|||||||+|.++..|++... +..+|+|||+|+.||+.|++++.+
T Consensus 49 svP~Y~~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~---------- 118 (261)
T 4gek_A 49 SVPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA---------- 118 (261)
T ss_dssp HSTTHHHHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHT----------
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHh----------
Confidence 34677776666655544 34678999999999999999987631 225899999999999999988763
Q ss_pred CCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 752 PCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 752 Pr~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
.....+++++++|+.++++ ..||+|++..++||+++++...+.++++++|||| .++++.+..
T Consensus 119 -~~~~~~v~~~~~D~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~ 181 (261)
T 4gek_A 119 -YKAPTPVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 181 (261)
T ss_dssp -SCCSSCEEEEESCTTTCCC--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred -hccCceEEEeecccccccc--cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence 1234589999999998875 4699999999999999776666667799999999 777776643
No 10
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.63 E-value=5e-15 Score=147.34 Aligned_cols=163 Identities=14% Similarity=0.209 Sum_probs=116.0
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
..+++.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|++++. .++++++
T Consensus 35 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~----------------~~~~~~~ 95 (220)
T 3hnr_A 35 EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLP----------------KEFSITE 95 (220)
T ss_dssp HHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTT---CEEEEECSCHHHHHHHHHHSC----------------TTCCEES
T ss_pred HHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCC---CeEEEEeCCHHHHHHHHHhCC----------------CceEEEe
Confidence 345555555678899999999999999999986 699999999999999987531 4789999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCc-CCCCCcchhhhc
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTI-QEDDPDEKTQLQ 841 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g-~~eYpdEp~g~~ 841 (933)
+|+.+++.. +.||+|++..+++|+++.....+.+++.++|||| .+++.+|+......+....... ...| .
T Consensus 96 ~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-------~ 167 (220)
T 3hnr_A 96 GDFLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGF-------H 167 (220)
T ss_dssp CCSSSCCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTC-------H
T ss_pred CChhhcCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCC-------c
Confidence 999998877 8999999999999999655444566799999999 8888888754333222211000 0000 0
Q ss_pred cccccCCCcccccCHHHHHHHHHHHHHHcCcEEEEEe
Q 002345 842 SCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSG 878 (933)
Q Consensus 842 ~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsVEF~G 878 (933)
.. .....+.+.++.+++. .+.++.||+++...
T Consensus 168 ~~-~~~~~~~~~~~~~~~~----~~l~~aGf~v~~~~ 199 (220)
T 3hnr_A 168 QL-ANDLQTEYYTRIPVMQ----TIFENNGFHVTFTR 199 (220)
T ss_dssp HH-HHHHHHSCCCBHHHHH----HHHHHTTEEEEEEE
T ss_pred cc-hhhcchhhcCCHHHHH----HHHHHCCCEEEEee
Confidence 00 0001112334778877 56788899886633
No 11
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.63 E-value=4.5e-15 Score=149.33 Aligned_cols=173 Identities=14% Similarity=0.173 Sum_probs=120.1
Q ss_pred chHHHHHHHHHHHhh-cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002345 677 PLSKQRVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 755 (933)
Q Consensus 677 PLy~qRve~Ild~L~-~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~ 755 (933)
|.+....+.+.+.+. ..++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|++++. .
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~--------------~ 90 (234)
T 3dtn_A 26 PCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFR--------------G 90 (234)
T ss_dssp TTHHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTC--------------S
T ss_pred cCHHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhc--------------c
Confidence 445555566666665 3467899999999999999999874 23799999999999999988753 1
Q ss_pred CccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhH--------HHHhhc
Q 002345 756 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNA--------ILQKSS 826 (933)
Q Consensus 756 ~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs--------~f~~l~ 826 (933)
..+++++++|+.++++. +.||+|++..+++|++++....+.+++.++|+|| .+++.++...-.. .|....
T Consensus 91 ~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (234)
T 3dtn_A 91 NLKVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYV 169 (234)
T ss_dssp CTTEEEEESCTTTCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCchhccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHH
Confidence 22899999999998876 8999999999999998666555666799999999 7888776543221 121111
Q ss_pred cCcCCCCCcchhhhccccccCCCcccccCHHHHHHHHHHHHHHcCcEE
Q 002345 827 STIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV 874 (933)
Q Consensus 827 ~~g~~eYpdEp~g~~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsV 874 (933)
.. ..+..+. ....+....|...++.+++.. ++++.||++
T Consensus 170 ~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----ll~~aGF~~ 208 (234)
T 3dtn_A 170 EN--SGLTEEE---IAAGYERSKLDKDIEMNQQLN----WLKEAGFRD 208 (234)
T ss_dssp HT--SSCCHHH---HHTTC----CCCCCBHHHHHH----HHHHTTCEE
T ss_pred Hh--cCCCHHH---HHHHHHhcccccccCHHHHHH----HHHHcCCCc
Confidence 00 0111110 011123335666789888884 567789876
No 12
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.63 E-value=2.9e-15 Score=152.65 Aligned_cols=156 Identities=15% Similarity=0.251 Sum_probs=116.4
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|++++.. .+..++++.++
T Consensus 12 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~------------~~~~~v~~~~~ 76 (239)
T 1xxl_A 12 LMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQE------------KGVENVRFQQG 76 (239)
T ss_dssp HHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHH------------HTCCSEEEEEC
T ss_pred hHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHH------------cCCCCeEEEec
Confidence 35566777788999999999999999999887 5999999999999999887652 13357999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhccc
Q 002345 765 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSC 843 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~~ 843 (933)
|+.++++.+++||+|++..+++|++ +....+. ++.++|+|| .+++.++....+..+.... . ...
T Consensus 77 d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~-~~~~~LkpgG~l~~~~~~~~~~~~~~~~~---------~----~~~ 141 (239)
T 1xxl_A 77 TAESLPFPDDSFDIITCRYAAHHFS-DVRKAVR-EVARVLKQDGRFLLVDHYAPEDPVLDEFV---------N----HLN 141 (239)
T ss_dssp BTTBCCSCTTCEEEEEEESCGGGCS-CHHHHHH-HHHHHEEEEEEEEEEEECBCSSHHHHHHH---------H----HHH
T ss_pred ccccCCCCCCcEEEEEECCchhhcc-CHHHHHH-HHHHHcCCCcEEEEEEcCCCCChhHHHHH---------H----HHH
Confidence 9999888888999999999999998 5555554 599999999 7777666543222222110 0 011
Q ss_pred cccCCCcccccCHHHHHHHHHHHHHHcCcEE
Q 002345 844 KFRNHDHKFEWTRDQFNCWATELAARHNYSV 874 (933)
Q Consensus 844 ~fRh~DHkFeWTreEF~~Was~LA~r~GYsV 874 (933)
..+...|...++.+++.. +..+.||.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~----ll~~aGf~~ 168 (239)
T 1xxl_A 142 RLRDPSHVRESSLSEWQA----MFSANQLAY 168 (239)
T ss_dssp HHHCTTCCCCCBHHHHHH----HHHHTTEEE
T ss_pred HhccccccCCCCHHHHHH----HHHHCCCcE
Confidence 123345556678888884 566778876
No 13
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.63 E-value=1.4e-15 Score=154.61 Aligned_cols=126 Identities=15% Similarity=0.236 Sum_probs=103.9
Q ss_pred cCCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002345 674 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 753 (933)
Q Consensus 674 F~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr 753 (933)
+..|.+...++.+++.+...++.+|||||||+|.++..|++..+ .+|+|+|+|+.|++.|++++.. .
T Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~-----------~ 82 (256)
T 1nkv_A 16 IHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEE-----------L 82 (256)
T ss_dssp SSSSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHH-----------T
T ss_pred ccCCCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHh-----------c
Confidence 44567777788888888777889999999999999999987642 6899999999999999987652 1
Q ss_pred CCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 754 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 754 ~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+...++++.++|+.++++ +++||+|+|..+++|++ +....+. ++.++|||| .+++.+|+
T Consensus 83 ~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~~~~~~-~~~~~l~-~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 83 GVSERVHFIHNDAAGYVA-NEKCDVAACVGATWIAG-GFAGAEE-LLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp TCTTTEEEEESCCTTCCC-SSCEEEEEEESCGGGTS-SSHHHHH-HHTTSEEEEEEEEEEEEE
T ss_pred CCCcceEEEECChHhCCc-CCCCCEEEECCChHhcC-CHHHHHH-HHHHHcCCCeEEEEecCc
Confidence 122479999999999887 78999999999999998 4445554 599999999 78887764
No 14
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.62 E-value=7.5e-15 Score=148.83 Aligned_cols=149 Identities=10% Similarity=0.096 Sum_probs=113.0
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+++.+...++.+|||||||+|.++..|++.+ ..+|+|+|+|+.+++.|++++. ...+++++++
T Consensus 84 ~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~--------------~~~~~~~~~~ 147 (254)
T 1xtp_A 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELA--------------GMPVGKFILA 147 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTT--------------TSSEEEEEES
T ss_pred HHHHhhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhc--------------cCCceEEEEc
Confidence 34444444567899999999999999998875 2679999999999999988753 1257999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhccc
Q 002345 765 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSC 843 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~~ 843 (933)
|+.++++..+.||+|++..+++|++++....+.+++.++|+|| .+++.++...... .
T Consensus 148 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~----------------------~ 205 (254)
T 1xtp_A 148 SMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR----------------------F 205 (254)
T ss_dssp CGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC----------------------E
T ss_pred cHHHCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc----------------------c
Confidence 9999888778999999999999998655556666799999999 7888876432100 0
Q ss_pred cccCCCcccccCHHHHHHHHHHHHHHcCcEEE
Q 002345 844 KFRNHDHKFEWTRDQFNCWATELAARHNYSVE 875 (933)
Q Consensus 844 ~fRh~DHkFeWTreEF~~Was~LA~r~GYsVE 875 (933)
.....++.+.++++++.. +..+.||.+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~----~l~~aGf~~~ 233 (254)
T 1xtp_A 206 LVDKEDSSLTRSDIHYKR----LFNESGVRVV 233 (254)
T ss_dssp EEETTTTEEEBCHHHHHH----HHHHHTCCEE
T ss_pred eecccCCcccCCHHHHHH----HHHHCCCEEE
Confidence 112334556679999985 4566798774
No 15
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.62 E-value=7.6e-15 Score=152.72 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=113.6
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-CC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-SR 772 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp-~~ 772 (933)
++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|++++.. .....+++++++|+.+++ +.
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~-----------~~~~~~v~~~~~d~~~~~~~~ 133 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERG---HQVILCDLSAQMIDRAKQAAEA-----------KGVSDNMQFIHCAAQDVASHL 133 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHC------------CCGGGEEEEESCGGGTGGGC
T ss_pred CCCEEEEeCCcchHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHh-----------cCCCcceEEEEcCHHHhhhhc
Confidence 36799999999999999999986 6999999999999999987652 112268999999999887 56
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhccccccCCCcc
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHK 851 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~~~fRh~DHk 851 (933)
.++||+|++..+++|++ ++...+ +++.++|+|| .+++.+++..... +.... .+...+. ..+..........+.
T Consensus 134 ~~~fD~v~~~~~l~~~~-~~~~~l-~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~-~~~~~~~--~~~~~~~~~~~~~~~ 207 (285)
T 4htf_A 134 ETPVDLILFHAVLEWVA-DPRSVL-QTLWSVLRPGGVLSLMFYNAHGLL-MHNMV-AGNFDYV--QAGMPKKKKRTLSPD 207 (285)
T ss_dssp SSCEEEEEEESCGGGCS-CHHHHH-HHHHHTEEEEEEEEEEEEBHHHHH-HHHHH-TTCHHHH--HTTCCCC----CCCS
T ss_pred CCCceEEEECchhhccc-CHHHHH-HHHHHHcCCCeEEEEEEeCCchHH-HHHHH-hcCHHHH--hhhccccccccCCCC
Confidence 78999999999999998 554555 4699999999 8888888754221 11110 0000000 000001112234556
Q ss_pred cccCHHHHHHHHHHHHHHcCcEE-EEEeec
Q 002345 852 FEWTRDQFNCWATELAARHNYSV-EFSGVG 880 (933)
Q Consensus 852 FeWTreEF~~Was~LA~r~GYsV-EF~GVG 880 (933)
..++++++.. ++++.||.+ +..++.
T Consensus 208 ~~~~~~~l~~----~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 208 YPRDPTQVYL----WLEEAGWQIMGKTGVR 233 (285)
T ss_dssp CCBCHHHHHH----HHHHTTCEEEEEEEES
T ss_pred CCCCHHHHHH----HHHHCCCceeeeeeEE
Confidence 6789999995 557789987 344543
No 16
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.62 E-value=4.1e-15 Score=146.77 Aligned_cols=113 Identities=14% Similarity=0.241 Sum_probs=93.9
Q ss_pred HHHHHhh-cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 685 YALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 685 ~Ild~L~-~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
.+++.+. ..++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|++ . +..++++++
T Consensus 36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~--~--------------~~~~~~~~~ 96 (218)
T 3ou2_A 36 AALERLRAGNIRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGR--H--------------GLDNVEFRQ 96 (218)
T ss_dssp HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHGG--G--------------CCTTEEEEE
T ss_pred HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHh--c--------------CCCCeEEEe
Confidence 4445554 3456799999999999999999886 699999999999999965 1 335799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
+|+.++ ...++||+|++..+++|++++....+.+++.++|+|| .+++.+++..
T Consensus 97 ~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 150 (218)
T 3ou2_A 97 QDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDH 150 (218)
T ss_dssp CCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred cccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 999988 6678999999999999999654566667799999999 8888888763
No 17
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.61 E-value=8.4e-15 Score=145.41 Aligned_cols=132 Identities=13% Similarity=0.178 Sum_probs=104.1
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|++++ ++.+..+|+.+++ ..
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~------------------~~~~~~~d~~~~~-~~ 100 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAG---FDVDATDGSPELAAEASRRL------------------GRPVRTMLFHQLD-AI 100 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHH------------------TSCCEECCGGGCC-CC
T ss_pred CCCcEEEECCCCCHHHHHHHHcC---CeEEEECCCHHHHHHHHHhc------------------CCceEEeeeccCC-CC
Confidence 57899999999999999999986 69999999999999998763 3567889998887 67
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhccccccCCCccc
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKF 852 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~~~fRh~DHkF 852 (933)
+.||+|+|..+++|++.+....+.+++.++|+|| .++++++..... .......+..
T Consensus 101 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~~~ 157 (211)
T 3e23_A 101 DAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGE-----------------------GRDKLARYYN 157 (211)
T ss_dssp SCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSC-----------------------EECTTSCEEC
T ss_pred CcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcc-----------------------cccccchhcc
Confidence 8999999999999999666666667799999999 888887764310 0011122344
Q ss_pred ccCHHHHHHHHHHHHHHcC-cEE
Q 002345 853 EWTRDQFNCWATELAARHN-YSV 874 (933)
Q Consensus 853 eWTreEF~~Was~LA~r~G-YsV 874 (933)
.++++++.. +.++.| |.+
T Consensus 158 ~~~~~~~~~----~l~~aG~f~~ 176 (211)
T 3e23_A 158 YPSEEWLRA----RYAEAGTWAS 176 (211)
T ss_dssp CCCHHHHHH----HHHHHCCCSE
T ss_pred CCCHHHHHH----HHHhCCCcEE
Confidence 579999995 556678 876
No 18
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.61 E-value=6.6e-15 Score=146.33 Aligned_cols=148 Identities=12% Similarity=0.095 Sum_probs=113.6
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+.+++.+...++.+|||||||+|.++..+++.+++..+|+|+|+|+.+++.|++++.. .+..++++..
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~~~~~~ 94 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK------------LGLKNVEVLK 94 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH------------HTCTTEEEEE
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH------------cCCCcEEEEe
Confidence 3455666666788999999999999999998753346999999999999999987652 1334799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhcc
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQS 842 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~ 842 (933)
+|+.++++..++||+|++..+++|++ +....+ +++.++|+|| .+++.+++....
T Consensus 95 ~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l-~~~~~~LkpgG~l~i~~~~~~~~----------------------- 149 (219)
T 3dh0_A 95 SEENKIPLPDNTVDFIFMAFTFHELS-EPLKFL-EELKRVAKPFAYLAIIDWKKEER----------------------- 149 (219)
T ss_dssp CBTTBCSSCSSCEEEEEEESCGGGCS-SHHHHH-HHHHHHEEEEEEEEEEEECSSCC-----------------------
T ss_pred cccccCCCCCCCeeEEEeehhhhhcC-CHHHHH-HHHHHHhCCCeEEEEEEeccccc-----------------------
Confidence 99999888888999999999999997 554555 4699999999 777776653311
Q ss_pred ccccCCCcccccCHHHHHHHHHHHHHHcCcEE
Q 002345 843 CKFRNHDHKFEWTRDQFNCWATELAARHNYSV 874 (933)
Q Consensus 843 ~~fRh~DHkFeWTreEF~~Was~LA~r~GYsV 874 (933)
.....+...++.+++.. +..+.||.+
T Consensus 150 --~~~~~~~~~~~~~~~~~----~l~~~Gf~~ 175 (219)
T 3dh0_A 150 --DKGPPPEEVYSEWEVGL----ILEDAGIRV 175 (219)
T ss_dssp --SSSCCGGGSCCHHHHHH----HHHHTTCEE
T ss_pred --ccCCchhcccCHHHHHH----HHHHCCCEE
Confidence 01112333468888884 567789986
No 19
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.60 E-value=1.7e-14 Score=146.62 Aligned_cols=141 Identities=18% Similarity=0.214 Sum_probs=108.7
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
++.+|||||||+|.++..|++.+ ..+|+|+|+|+.|++.|++++.. .+..+++++.+|+.++++..
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~~~~~~~d~~~~~~~~ 144 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGE------------EGKRVRNYFCCGLQDFTPEP 144 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGG------------GGGGEEEEEECCGGGCCCCS
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhh------------cCCceEEEEEcChhhcCCCC
Confidence 47899999999999999998876 26999999999999999887542 11347899999999888777
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhccccccCCCccc
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKF 852 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~~~fRh~DHkF 852 (933)
+.||+|++..+++|++++....+.+++.++|+|| .+++.++.... .. .+...++.+
T Consensus 145 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~-------------------~~~~~~~~~ 201 (241)
T 2ex4_A 145 DSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE----GV-------------------ILDDVDSSV 201 (241)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS----SE-------------------EEETTTTEE
T ss_pred CCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC----cc-------------------eecccCCcc
Confidence 7899999999999999655556666799999999 77787775431 00 011223344
Q ss_pred ccCHHHHHHHHHHHHHHcCcEEE
Q 002345 853 EWTRDQFNCWATELAARHNYSVE 875 (933)
Q Consensus 853 eWTreEF~~Was~LA~r~GYsVE 875 (933)
.++.+++.. +..+.||.+.
T Consensus 202 ~~~~~~~~~----~l~~aGf~~~ 220 (241)
T 2ex4_A 202 CRDLDVVRR----IICSAGLSLL 220 (241)
T ss_dssp EEBHHHHHH----HHHHTTCCEE
T ss_pred cCCHHHHHH----HHHHcCCeEE
Confidence 458888884 5567898773
No 20
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.60 E-value=1.2e-14 Score=149.40 Aligned_cols=119 Identities=16% Similarity=0.224 Sum_probs=96.9
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
..+.+++.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++.. .....++.+
T Consensus 49 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~-----------~~~~~~~~~ 115 (273)
T 3bus_A 49 LTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQANARATA-----------AGLANRVTF 115 (273)
T ss_dssp HHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSC--CEEEEEESCHHHHHHHHHHHHH-----------TTCTTTEEE
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHh-----------cCCCcceEE
Confidence 345566666666788999999999999999987532 7999999999999999887652 112347999
Q ss_pred EEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
..+|+.++++.+++||+|++..+++|++ +....+ +++.++|+|| .+++.+++
T Consensus 116 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l-~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 116 SYADAMDLPFEDASFDAVWALESLHHMP-DRGRAL-REMARVLRPGGTVAIADFV 168 (273)
T ss_dssp EECCTTSCCSCTTCEEEEEEESCTTTSS-CHHHHH-HHHHTTEEEEEEEEEEEEE
T ss_pred EECccccCCCCCCCccEEEEechhhhCC-CHHHHH-HHHHHHcCCCeEEEEEEee
Confidence 9999999888888999999999999998 444455 4699999999 77877765
No 21
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.60 E-value=7e-15 Score=149.32 Aligned_cols=135 Identities=14% Similarity=0.221 Sum_probs=106.6
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--CC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--DS 771 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL--p~ 771 (933)
++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|++ +++++.+|+.+. ++
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~--------------------~~~~~~~d~~~~~~~~ 97 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELCKEEG---IESIGVDINEDMIKFCEG--------------------KFNVVKSDAIEYLKSL 97 (240)
T ss_dssp TCSCEEEETCTTTHHHHHHHHHT---CCEEEECSCHHHHHHHHT--------------------TSEEECSCHHHHHHTS
T ss_pred CCCeEEEEeCCCCHHHHHHHhCC---CcEEEEECCHHHHHHHHh--------------------hcceeeccHHHHhhhc
Confidence 56899999999999999999886 589999999999999854 167888998875 66
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhccccccCCCc
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDH 850 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~~~fRh~DH 850 (933)
.+++||+|++..++||++++....+.+++.++|||| .+++.+|+......+... +..+.|
T Consensus 98 ~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-------------------~~~~~~ 158 (240)
T 3dli_A 98 PDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINF-------------------YIDPTH 158 (240)
T ss_dssp CTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHH-------------------TTSTTC
T ss_pred CCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHH-------------------hcCccc
Confidence 778999999999999999665556667799999999 899999986532222111 123356
Q ss_pred ccccCHHHHHHHHHHHHHHcCcEE
Q 002345 851 KFEWTRDQFNCWATELAARHNYSV 874 (933)
Q Consensus 851 kFeWTreEF~~Was~LA~r~GYsV 874 (933)
...++++++.. +..+.||.+
T Consensus 159 ~~~~~~~~l~~----~l~~aGf~~ 178 (240)
T 3dli_A 159 KKPVHPETLKF----ILEYLGFRD 178 (240)
T ss_dssp CSCCCHHHHHH----HHHHHTCEE
T ss_pred cccCCHHHHHH----HHHHCCCeE
Confidence 66789999885 456678876
No 22
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.59 E-value=2e-14 Score=144.03 Aligned_cols=124 Identities=21% Similarity=0.316 Sum_probs=99.9
Q ss_pred chHHHHHHHHHHHhhcC--CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002345 677 PLSKQRVEYALQHIKES--CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 754 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~--~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~ 754 (933)
..+....+++.+.+... ++.+|||||||+|.++..+++.+ .+++|+|+|+.|++.|++++.. .
T Consensus 18 ~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~s~~~~~~a~~~~~~------------~ 82 (246)
T 1y8c_A 18 VDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRS------------Q 82 (246)
T ss_dssp CCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHH------------T
T ss_pred ccHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC---CcEEEEECCHHHHHHHHHHHhh------------c
Confidence 34556666777777654 67899999999999999999986 6899999999999999887642 1
Q ss_pred CCccEEEEEcCccccCCCCCCccEEEEcc-ccccCCh-hHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 755 DVKSAVLFDGSITVFDSRLHGFDIGTCLE-VIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 755 ~~~nVefi~GDaedLp~~~~sFDlVVc~e-VLEHLpd-D~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
+ .++.++++|+.+++.. +.||+|++.. +++|++. +....+.+++.++|+|| .+++++++..
T Consensus 83 ~-~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 146 (246)
T 1y8c_A 83 G-LKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYY 146 (246)
T ss_dssp T-CCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred C-CCeEEEecccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHH
Confidence 2 2789999999988766 7899999998 9999952 33345556699999999 8888888743
No 23
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.59 E-value=1e-14 Score=142.03 Aligned_cols=114 Identities=13% Similarity=0.118 Sum_probs=94.0
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++.. .+..++++..+
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~------------~~~~~~~~~~~ 87 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG---YDVDAWDKNAMSIANVERIKSI------------ENLDNLHTRVV 87 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH------------HTCTTEEEEEC
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHh------------CCCCCcEEEEc
Confidence 34555665677899999999999999999986 6999999999999999887652 13347999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 765 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
|+.+++. .+.||+|++..+++|++++....+.+.+.++|+|| .+++.++
T Consensus 88 d~~~~~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 88 DLNNLTF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp CGGGCCC-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred chhhCCC-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 9999877 78999999999999998655566667799999999 5555544
No 24
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.58 E-value=3.3e-15 Score=149.88 Aligned_cols=124 Identities=9% Similarity=0.024 Sum_probs=91.9
Q ss_pred HHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC-CCCCCccEEEEEcCc
Q 002345 688 QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV-PCTDVKSAVLFDGSI 766 (933)
Q Consensus 688 d~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~-Pr~~~~nVefi~GDa 766 (933)
+.+...++.+|||+|||+|.++..|++.| .+|+|||+|+.|++.|+++........ ..+. ......+++++++|+
T Consensus 16 ~~l~~~~~~~vLD~GCG~G~~~~~la~~g---~~V~gvD~S~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~d~ 91 (203)
T 1pjz_A 16 SSLNVVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHIT-SQGDFKVYAAPGIEIWCGDF 91 (203)
T ss_dssp HHHCCCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEE-EETTEEEEECSSSEEEEECC
T ss_pred HhcccCCCCEEEEeCCCCcHhHHHHHHCC---CeEEEEeCCHHHHHHHHHHccCCcccc-cccccccccCCccEEEECcc
Confidence 34444577899999999999999999987 699999999999999987643100000 0000 000135799999999
Q ss_pred cccCCCC-CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 767 TVFDSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 767 edLp~~~-~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.++++.+ ++||+|++..+++|++++....+.+++.++|||| .+++.+..
T Consensus 92 ~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~ 142 (203)
T 1pjz_A 92 FALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE 142 (203)
T ss_dssp SSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred ccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 9988764 7899999999999999666666667799999999 54555543
No 25
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.58 E-value=1.2e-14 Score=148.13 Aligned_cols=114 Identities=14% Similarity=0.179 Sum_probs=95.8
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
..+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.|++++. ..++++.+
T Consensus 34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~---------------~~~~~~~~ 96 (253)
T 3g5l_A 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTT---------------SPVVCYEQ 96 (253)
T ss_dssp HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCC---------------CTTEEEEE
T ss_pred HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhc---------------cCCeEEEE
Confidence 3455566656788999999999999999999873 499999999999999987631 35799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+|+.++++..++||+|++..+++|++ +....+. ++.++|+|| .+++++++.
T Consensus 97 ~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~-~~~~~LkpgG~l~~~~~~~ 148 (253)
T 3g5l_A 97 KAIEDIAIEPDAYNVVLSSLALHYIA-SFDDICK-KVYINLKSSGSFIFSVEHP 148 (253)
T ss_dssp CCGGGCCCCTTCEEEEEEESCGGGCS-CHHHHHH-HHHHHEEEEEEEEEEEECH
T ss_pred cchhhCCCCCCCeEEEEEchhhhhhh-hHHHHHH-HHHHHcCCCcEEEEEeCCC
Confidence 99999888888999999999999997 5555554 599999999 888888764
No 26
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.58 E-value=1.4e-14 Score=151.68 Aligned_cols=131 Identities=16% Similarity=0.133 Sum_probs=94.3
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC-----CCC
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC-----TDV 756 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr-----~~~ 756 (933)
..+++...+...++.+|||+|||+|..+..|++.| .+|+|||+|+.|++.|+++.............+. ...
T Consensus 56 l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (252)
T 2gb4_A 56 LKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRG---HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSS 132 (252)
T ss_dssp HHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETT
T ss_pred HHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCC
Confidence 33444333333467899999999999999999997 6999999999999999765320000000000000 013
Q ss_pred ccEEEEEcCccccCCCC-CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 757 KSAVLFDGSITVFDSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 757 ~nVefi~GDaedLp~~~-~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.+++++++|+.++++.. ++||+|++..+++|++++....+.+++.++|||| .+++.+.+
T Consensus 133 ~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~ 193 (252)
T 2gb4_A 133 GSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLS 193 (252)
T ss_dssp SSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred CceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence 57999999999988764 7999999999999999766666677799999999 55555544
No 27
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.57 E-value=1.3e-14 Score=144.13 Aligned_cols=117 Identities=15% Similarity=0.263 Sum_probs=95.5
Q ss_pred HHHHHHH-HhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 682 RVEYALQ-HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 682 Rve~Ild-~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
++..++. .+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|++++. ...+++
T Consensus 38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~--------------~~~~~~ 100 (216)
T 3ofk_A 38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTK--------------RWSHIS 100 (216)
T ss_dssp HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTT--------------TCSSEE
T ss_pred HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcc--------------cCCCeE
Confidence 4444443 4555567899999999999999999986 699999999999999988753 223899
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCCh-hHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 761 LFDGSITVFDSRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 761 fi~GDaedLp~~~~sFDlVVc~eVLEHLpd-D~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
++++|+.+++ ..++||+|+|..++||+++ +....+.+++.++|+|| .+++++|..
T Consensus 101 ~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 101 WAATDILQFS-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp EEECCTTTCC-CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred EEEcchhhCC-CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 9999999987 5789999999999999994 33345556799999999 888888863
No 28
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.57 E-value=1.4e-14 Score=151.31 Aligned_cols=122 Identities=15% Similarity=0.162 Sum_probs=98.8
Q ss_pred HHHHHHHHHHh----hcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002345 680 KQRVEYALQHI----KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 755 (933)
Q Consensus 680 ~qRve~Ild~L----~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~ 755 (933)
....+.+++.+ ...++.+|||||||+|.++..|++..+ .+|+|+|+|+.+++.|++++... ..
T Consensus 64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~-----------~~ 130 (297)
T 2o57_A 64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQA-----------GL 130 (297)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHH-----------TC
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhc-----------CC
Confidence 34455666776 556778999999999999999998632 58999999999999998876531 12
Q ss_pred CccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 756 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 756 ~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
..++++.++|+.++++.+++||+|++..+++|++ +....+ +++.++|||| .+++.+|+.
T Consensus 131 ~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l-~~~~~~LkpgG~l~~~~~~~ 190 (297)
T 2o57_A 131 ADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSP-DKLKVF-QECARVLKPRGVMAITDPMK 190 (297)
T ss_dssp TTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCS-CHHHHH-HHHHHHEEEEEEEEEEEEEE
T ss_pred CcceEEEEcCcccCCCCCCCEeEEEecchhhhcC-CHHHHH-HHHHHHcCCCeEEEEEEecc
Confidence 3479999999999988888999999999999998 454455 5699999999 888887753
No 29
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.57 E-value=2.6e-14 Score=143.68 Aligned_cols=113 Identities=21% Similarity=0.263 Sum_probs=94.6
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+...+...++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.|+++.. ..++++.++
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~---------------~~~~~~~~~ 96 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGP---------------DTGITYERA 96 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSC---------------SSSEEEEEC
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHhcc---------------cCCceEEEc
Confidence 455666666788999999999999999998862 399999999999999976532 237999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 765 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
|+.+++...++||+|++..+++|++ +....+. ++.++|+|| .+++++++.
T Consensus 97 d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~-~~~~~L~pgG~l~~~~~~~ 147 (243)
T 3bkw_A 97 DLDKLHLPQDSFDLAYSSLALHYVE-DVARLFR-TVHQALSPGGHFVFSTEHP 147 (243)
T ss_dssp CGGGCCCCTTCEEEEEEESCGGGCS-CHHHHHH-HHHHHEEEEEEEEEEEECH
T ss_pred ChhhccCCCCCceEEEEeccccccc-hHHHHHH-HHHHhcCcCcEEEEEeCCc
Confidence 9999887778999999999999998 5555554 599999999 888888874
No 30
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.57 E-value=4e-14 Score=147.19 Aligned_cols=120 Identities=17% Similarity=0.312 Sum_probs=94.8
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
.++.+++.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++.. .....++++
T Consensus 52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~-----------~~~~~~~~~ 118 (287)
T 1kpg_A 52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVAN-----------SENLRSKRV 118 (287)
T ss_dssp HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHT-----------CCCCSCEEE
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHh-----------cCCCCCeEE
Confidence 344555666666788999999999999999984332 5999999999999999987652 122357999
Q ss_pred EEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
..+|+.+++ ++||+|++.++++|++++....+.+++.++|||| .+++.+++..
T Consensus 119 ~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 172 (287)
T 1kpg_A 119 LLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL 172 (287)
T ss_dssp EESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred EECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 999998775 7899999999999997433344455699999999 8888887754
No 31
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.56 E-value=2.1e-14 Score=141.14 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=102.0
Q ss_pred CCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002345 675 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 754 (933)
Q Consensus 675 ~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~ 754 (933)
..+.+....+.+++.+...++ +|||||||+|.++..|++..+ .+|+|+|+|+.+++.|++++... .
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~~-----------~ 90 (219)
T 3dlc_A 25 FAPIYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADA-----------N 90 (219)
T ss_dssp TTTHHHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSE--EEEEEEESCHHHHHHHHHHHHHT-----------T
T ss_pred hccccHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHhc-----------c
Confidence 345666666777777665444 999999999999999998732 69999999999999999886531 1
Q ss_pred CCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 755 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 755 ~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
...+++++++|+.++++..+.||+|++..+++|++ +....+. ++.++|+|| .+++.++...
T Consensus 91 ~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~-~~~~~l~-~~~~~L~pgG~l~~~~~~~~ 152 (219)
T 3dlc_A 91 LNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWE-DVATAFR-EIYRILKSGGKTYIGGGFGN 152 (219)
T ss_dssp CTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCS-CHHHHHH-HHHHHEEEEEEEEEEECCSS
T ss_pred ccCceEEEEcCHHHCCCCcccccEEEECchHhhcc-CHHHHHH-HHHHhCCCCCEEEEEeccCc
Confidence 23479999999999888888999999999999997 5555554 599999999 7777776544
No 32
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.56 E-value=2.6e-15 Score=158.82 Aligned_cols=186 Identities=18% Similarity=0.324 Sum_probs=113.0
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccc-------------------------
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLD------------------------- 748 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~------------------------- 748 (933)
++.+|||||||+|.++..|++..+ ..+|+|||+|+.|++.|++++.........
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 678999999999999999998731 269999999999999998875422100000
Q ss_pred --------c-------------CCCCCCCccEEEEEcCccccC-----CCCCCccEEEEccccccC----ChhHHHHHHH
Q 002345 749 --------A-------------AVPCTDVKSAVLFDGSITVFD-----SRLHGFDIGTCLEVIEHM----EEDEASQFGN 798 (933)
Q Consensus 749 --------~-------------~~Pr~~~~nVefi~GDaedLp-----~~~~sFDlVVc~eVLEHL----pdD~l~aL~e 798 (933)
. ..+..-..+++|.++|+...+ +....||+|+|..+++|+ .++....+.+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 0 000001248999999998654 456899999999999888 4445556667
Q ss_pred HHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhccccccCCCcccccCHHHHHHHHHHHHHHcCcEE-EE
Q 002345 799 IVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV-EF 876 (933)
Q Consensus 799 eI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsV-EF 876 (933)
.++++|+|| .+++.+.+ +..+.... .. ........+...|.+++|..|+.. ...||+. +.
T Consensus 205 ~~~~~LkpGG~lil~~~~--~~~y~~~~------~~--------~~~~~~~~~~~~~~p~~~~~~L~~--~~~GF~~~~~ 266 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQP--WSSYGKRK------TL--------TETIYKNYYRIQLKPEQFSSYLTS--PDVGFSSYEL 266 (292)
T ss_dssp HHHHHEEEEEEEEEECCC--HHHHHTTT------TS--------CHHHHHHHHHCCCCGGGHHHHHTS--TTTCCCEEEE
T ss_pred HHHHHhCCCcEEEEecCC--chhhhhhh------cc--------cHHHHhhhhcEEEcHHHHHHHHHh--cCCCceEEEE
Confidence 799999999 66665443 22221110 00 000111122345678899976421 1269854 45
Q ss_pred EeecCCCCCCCCccceeEEEecCC
Q 002345 877 SGVGGSGDREPGFASQIAVFRSRT 900 (933)
Q Consensus 877 ~GVG~~p~~~~Gf~TQIAVF~R~~ 900 (933)
++.......||..++.+|+|+.
T Consensus 267 --~~~~~~~~~g~~r~i~~~~k~~ 288 (292)
T 3g07_A 267 --VATPHNTSKGFQRPVYLFHKAR 288 (292)
T ss_dssp --C-----------CCCEEEECCC
T ss_pred --eccCCCCCCCccceEEEEEcCC
Confidence 3333333689999999999964
No 33
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.56 E-value=5.4e-14 Score=139.23 Aligned_cols=159 Identities=19% Similarity=0.244 Sum_probs=113.4
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+.+.+. .++.+|||||||+|.++..+++.+ .+++|+|+|+.+++.|+++. .++..+|
T Consensus 25 l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~-------------------~~~~~~d 81 (230)
T 3cc8_A 25 LLKHIK-KEWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKL-------------------DHVVLGD 81 (230)
T ss_dssp HHTTCC-TTCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTS-------------------SEEEESC
T ss_pred HHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhC-------------------CcEEEcc
Confidence 444444 567899999999999999999885 79999999999999996531 2678899
Q ss_pred ccc--cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhcc
Q 002345 766 ITV--FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQS 842 (933)
Q Consensus 766 aed--Lp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~ 842 (933)
+.+ .+..++.||+|++..+++|++ ++...+ +++.++|+|| .+++++|+......+.... .+ .|... .
T Consensus 82 ~~~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l-~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~-~~--~~~~~-----~ 151 (230)
T 3cc8_A 82 IETMDMPYEEEQFDCVIFGDVLEHLF-DPWAVI-EKVKPYIKQNGVILASIPNVSHISVLAPLL-AG--NWTYT-----E 151 (230)
T ss_dssp TTTCCCCSCTTCEEEEEEESCGGGSS-CHHHHH-HHTGGGEEEEEEEEEEEECTTSHHHHHHHH-TT--CCCCB-----S
T ss_pred hhhcCCCCCCCccCEEEECChhhhcC-CHHHHH-HHHHHHcCCCCEEEEEeCCcchHHHHHHHh-cC--Cceec-----c
Confidence 876 455567899999999999998 444454 5699999999 8899999876543333221 11 11000 1
Q ss_pred ccccCCCcccccCHHHHHHHHHHHHHHcCcEEE-EEeecC
Q 002345 843 CKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVGG 881 (933)
Q Consensus 843 ~~fRh~DHkFeWTreEF~~Was~LA~r~GYsVE-F~GVG~ 881 (933)
.+.....|...++++++.. +..+.||++. ...+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~----~l~~~Gf~~~~~~~~~~ 187 (230)
T 3cc8_A 152 YGLLDKTHIRFFTFNEMLR----MFLKAGYSISKVDRVYV 187 (230)
T ss_dssp SSTTBTTCCCCCCHHHHHH----HHHHTTEEEEEEEEEEC
T ss_pred CCCCCcceEEEecHHHHHH----HHHHcCCeEEEEEeccc
Confidence 1222345667789999984 5677899773 334433
No 34
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.56 E-value=3.2e-14 Score=144.58 Aligned_cols=105 Identities=10% Similarity=0.115 Sum_probs=87.8
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
..++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|++++. ....++.+.++|+.++++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~-------------~~~~~~~~~~~d~~~~~~ 100 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKIA-------------GVDRKVQVVQADARAIPL 100 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTT---CEEEEEESCHHHHHHHHHHTT-------------TSCTTEEEEESCTTSCCS
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhh-------------ccCCceEEEEcccccCCC
Confidence 3467899999999999999999886 699999999999999987641 234589999999999888
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
.+++||+|++..++||++ +....+ +++.++|+|| .+++..+
T Consensus 101 ~~~~fD~v~~~~~l~~~~-~~~~~l-~~~~~~L~pgG~l~~~~~ 142 (263)
T 2yqz_A 101 PDESVHGVIVVHLWHLVP-DWPKVL-AEAIRVLKPGGALLEGWD 142 (263)
T ss_dssp CTTCEEEEEEESCGGGCT-THHHHH-HHHHHHEEEEEEEEEEEE
T ss_pred CCCCeeEEEECCchhhcC-CHHHHH-HHHHHHCCCCcEEEEEec
Confidence 788999999999999998 554555 4599999999 5555533
No 35
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.55 E-value=1.6e-13 Score=138.59 Aligned_cols=136 Identities=14% Similarity=0.172 Sum_probs=104.0
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|++++.. .....+++++++|+.+++. .
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~-----------~~~~~~v~~~~~d~~~~~~-~ 130 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPE---RFVVGLDISESALAKANETYGS-----------SPKAEYFSFVKEDVFTWRP-T 130 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTT---EEEEEECSCHHHHHHHHHHHTT-----------SGGGGGEEEECCCTTTCCC-S
T ss_pred CCCCEEEeCCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHhhc-----------cCCCcceEEEECchhcCCC-C
Confidence 44699999999999999999876 7899999999999999887642 1123579999999998764 4
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhccccccCCCccc
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKF 852 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~~~fRh~DHkF 852 (933)
..||+|++..+++|++++....+.+++.++|+|| .+++.+.+.... ...+.+
T Consensus 131 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------------------------~~~~~~ 183 (235)
T 3lcc_A 131 ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDH---------------------------VGGPPY 183 (235)
T ss_dssp SCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCC---------------------------CSCSSC
T ss_pred CCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccccc---------------------------CCCCCc
Confidence 5899999999999998666667777899999999 666554432200 001123
Q ss_pred ccCHHHHHHHHHHHHHHcCcEEE
Q 002345 853 EWTRDQFNCWATELAARHNYSVE 875 (933)
Q Consensus 853 eWTreEF~~Was~LA~r~GYsVE 875 (933)
.++++++.. +....||.+.
T Consensus 184 ~~~~~~~~~----~l~~~Gf~~~ 202 (235)
T 3lcc_A 184 KVDVSTFEE----VLVPIGFKAV 202 (235)
T ss_dssp CCCHHHHHH----HHGGGTEEEE
T ss_pred cCCHHHHHH----HHHHcCCeEE
Confidence 368888884 5677898874
No 36
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.55 E-value=1.2e-13 Score=145.44 Aligned_cols=120 Identities=16% Similarity=0.227 Sum_probs=95.8
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
.++.+++.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++.. .+...++++
T Consensus 60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~-----------~~~~~~v~~ 126 (302)
T 3hem_A 60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDE-----------VDSPRRKEV 126 (302)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHH-----------SCCSSCEEE
T ss_pred HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHh-----------cCCCCceEE
Confidence 344556666666788999999999999999998732 6899999999999999988653 122337999
Q ss_pred EEcCccccCCCCCCccEEEEccccccCCh-------hHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEVIEHMEE-------DEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eVLEHLpd-------D~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
.++|+.++ .+.||+|++..++||+++ +....+.+++.++|||| .+++.++...
T Consensus 127 ~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 127 RIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp EECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred EECCHHHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 99999876 678999999999999953 34455566799999999 8888777544
No 37
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.55 E-value=4.4e-14 Score=148.52 Aligned_cols=121 Identities=15% Similarity=0.209 Sum_probs=97.2
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC---c
Q 002345 681 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV---K 757 (933)
Q Consensus 681 qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~---~ 757 (933)
.....+++.+.. .+.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|++++.. .+. .
T Consensus 70 ~~~~~~~~~~~~-~~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~------------~~~~~~~ 133 (299)
T 3g2m_A 70 SEAREFATRTGP-VSGPVLELAAGMGRLTFPFLDLG---WEVTALELSTSVLAAFRKRLAE------------APADVRD 133 (299)
T ss_dssp HHHHHHHHHHCC-CCSCEEEETCTTTTTHHHHHTTT---CCEEEEESCHHHHHHHHHHHHT------------SCHHHHT
T ss_pred HHHHHHHHhhCC-CCCcEEEEeccCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHhh------------ccccccc
Confidence 334445555543 34499999999999999999986 6899999999999999987652 111 4
Q ss_pred cEEEEEcCccccCCCCCCccEEEEc-cccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002345 758 SAVLFDGSITVFDSRLHGFDIGTCL-EVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 818 (933)
Q Consensus 758 nVefi~GDaedLp~~~~sFDlVVc~-eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ef 818 (933)
+++++++|+.++++ .+.||+|+|. .+++|++++....+.+++.++|+|| .+++.+++...
T Consensus 134 ~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 195 (299)
T 3g2m_A 134 RCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEA 195 (299)
T ss_dssp TEEEEECBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred ceEEEeCchhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence 79999999999877 6789999975 6788888666666677799999999 99999998753
No 38
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.54 E-value=4.1e-14 Score=140.16 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=100.4
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
++.+|||||||+|.++..+ + ..+++|+|+|+.|++.|+++. .++.+.++|+.++++..
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~--~~~v~~vD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~~~~~ 93 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---P--YPQKVGVEPSEAMLAVGRRRA-----------------PEATWVRAWGEALPFPG 93 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---C--CSEEEEECCCHHHHHHHHHHC-----------------TTSEEECCCTTSCCSCS
T ss_pred CCCeEEEECCCCCHhHHhC---C--CCeEEEEeCCHHHHHHHHHhC-----------------CCcEEEEcccccCCCCC
Confidence 6789999999999999887 3 138999999999999997752 36889999999988888
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch--hHHHHhhccCcCCCCCcchhhhccccccCCCc
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY--NAILQKSSSTIQEDDPDEKTQLQSCKFRNHDH 850 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ef--Ns~f~~l~~~g~~eYpdEp~g~~~~~fRh~DH 850 (933)
++||+|++..++||++ +....+. ++.++|+|| .+++++|+... ...+... ...+.....|
T Consensus 94 ~~fD~v~~~~~l~~~~-~~~~~l~-~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 156 (211)
T 2gs9_A 94 ESFDVVLLFTTLEFVE-DVERVLL-EARRVLRPGGALVVGVLEALSPWAALYRRL---------------GEKGVLPWAQ 156 (211)
T ss_dssp SCEEEEEEESCTTTCS-CHHHHHH-HHHHHEEEEEEEEEEEECTTSHHHHHHHHH---------------HHTTCTTGGG
T ss_pred CcEEEEEEcChhhhcC-CHHHHHH-HHHHHcCCCCEEEEEecCCcCcHHHHHHHH---------------hhccCccccc
Confidence 8999999999999998 5555554 599999999 88899998642 1111110 0001111235
Q ss_pred ccccCHHHHHHHHH
Q 002345 851 KFEWTRDQFNCWAT 864 (933)
Q Consensus 851 kFeWTreEF~~Was 864 (933)
...++++++..|++
T Consensus 157 ~~~~s~~~l~~~l~ 170 (211)
T 2gs9_A 157 ARFLAREDLKALLG 170 (211)
T ss_dssp CCCCCHHHHHHHHC
T ss_pred cccCCHHHHHHHhc
Confidence 56689999998765
No 39
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.54 E-value=1.2e-14 Score=151.15 Aligned_cols=127 Identities=22% Similarity=0.322 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002345 680 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759 (933)
Q Consensus 680 ~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV 759 (933)
..-.+++.+.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|++++..... .....++
T Consensus 43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~--------~~~~~~~ 111 (293)
T 3thr_A 43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRK--------EPAFDKW 111 (293)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTT--------SHHHHTC
T ss_pred HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHhhhhccc--------cccccee
Confidence 3444667777776778899999999999999999987 5999999999999999887532110 1123478
Q ss_pred EEEEcCccccC---CCCCCccEEEEc-cccccCCh-----hHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 760 VLFDGSITVFD---SRLHGFDIGTCL-EVIEHMEE-----DEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 760 efi~GDaedLp---~~~~sFDlVVc~-eVLEHLpd-----D~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
.+..+|+.+++ +..++||+|+|. .+++|+++ +....+.+++.++|||| .+++++||.+
T Consensus 112 ~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (293)
T 3thr_A 112 VIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYD 179 (293)
T ss_dssp EEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred eEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHH
Confidence 99999998877 677899999999 89999995 34455566799999999 8999999854
No 40
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.54 E-value=4.2e-14 Score=135.51 Aligned_cols=106 Identities=20% Similarity=0.287 Sum_probs=88.0
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+++.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|+++ .+++++..+|
T Consensus 9 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----------------~~~v~~~~~d 68 (170)
T 3i9f_A 9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK-----------------FDSVITLSDP 68 (170)
T ss_dssp THHHHHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH-----------------CTTSEEESSG
T ss_pred HHHhcCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh-----------------CCCcEEEeCC
Confidence 4455566678899999999999999999987 5999999999999999775 1378899999
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 766 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 766 aedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
.+...+.||+|++..+++|++ +....+ +++.++|+|| .+++.+++.
T Consensus 69 ---~~~~~~~~D~v~~~~~l~~~~-~~~~~l-~~~~~~L~pgG~l~~~~~~~ 115 (170)
T 3i9f_A 69 ---KEIPDNSVDFILFANSFHDMD-DKQHVI-SEVKRILKDDGRVIIIDWRK 115 (170)
T ss_dssp ---GGSCTTCEEEEEEESCSTTCS-CHHHHH-HHHHHHEEEEEEEEEEEECS
T ss_pred ---CCCCCCceEEEEEccchhccc-CHHHHH-HHHHHhcCCCCEEEEEEcCc
Confidence 556678999999999999997 554555 4699999999 777777654
No 41
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.54 E-value=2e-14 Score=152.43 Aligned_cols=122 Identities=13% Similarity=0.065 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHhh-cCCCCEEEEEcCCcChHHHHHhcC-CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002345 678 LSKQRVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 755 (933)
Q Consensus 678 Ly~qRve~Ild~L~-~~~g~rVLDIGCGtG~fL~~LAr~-g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~ 755 (933)
+.....+.+++.+. ..++.+|||||||+|.++..|++. + .+|+|+|+|+.+++.|++++... ..
T Consensus 100 ~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~-----------~~ 165 (312)
T 3vc1_A 100 LESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG---SRVEGVTLSAAQADFGNRRAREL-----------RI 165 (312)
T ss_dssp HHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHT-----------TC
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHc-----------CC
Confidence 33444456667766 556789999999999999999987 5 68999999999999999886531 12
Q ss_pred CccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 756 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 756 ~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
..+++++++|+.++++..+.||+|++..+++|++ . ..+.+++.++|||| .+++.+++.
T Consensus 166 ~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~-~~~l~~~~~~LkpgG~l~~~~~~~ 224 (312)
T 3vc1_A 166 DDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVD--L-HDLFSEHSRFLKVGGRYVTITGCW 224 (312)
T ss_dssp TTTEEEEECCTTSCCCCTTCEEEEEEESCGGGSC--H-HHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCceEEEECChhcCCCCCCCEeEEEECCchhhCC--H-HHHHHHHHHHcCCCcEEEEEEccc
Confidence 3479999999999888888999999999999995 3 34445699999999 777777654
No 42
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.54 E-value=4.7e-14 Score=145.45 Aligned_cols=125 Identities=18% Similarity=0.135 Sum_probs=100.3
Q ss_pred CCchHHHHHHHHHHHhh-cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002345 675 SPPLSKQRVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 753 (933)
Q Consensus 675 ~PPLy~qRve~Ild~L~-~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr 753 (933)
..|........+++.+. ..++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.|++++.. .
T Consensus 26 ~~~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~-----------~ 92 (267)
T 3kkz_A 26 QGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQ-----------S 92 (267)
T ss_dssp SSSCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHH-----------T
T ss_pred cCCCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHH-----------c
Confidence 33455555666666665 45678999999999999999999852 6999999999999999988653 1
Q ss_pred CCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 754 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 754 ~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
....+++++++|+.++++..++||+|+|..+++|++ ....+ +++.++|+|| .+++.+++
T Consensus 93 ~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--~~~~l-~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 93 GLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIG--FERGL-NEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp TCTTTEEEEECCTTSCCCCTTCEEEEEESSCGGGTC--HHHHH-HHHGGGEEEEEEEEEEEEE
T ss_pred CCCcCcEEEEcChhhCCCCCCCEEEEEEcCCceecC--HHHHH-HHHHHHcCCCCEEEEEEee
Confidence 223469999999999888788999999999999994 33344 5699999999 88888775
No 43
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.54 E-value=2e-13 Score=134.29 Aligned_cols=157 Identities=14% Similarity=0.121 Sum_probs=112.7
Q ss_pred EEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCc
Q 002345 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGF 776 (933)
Q Consensus 697 rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~sF 776 (933)
+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|++++... + .++.+.++|+.++++..+.|
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~------------~-~~~~~~~~d~~~~~~~~~~f 95 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLG---YEVTAVDQSSVGLAKAKQLAQEK------------G-VKITTVQSNLADFDIVADAW 95 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTT---CEEEEECSSHHHHHHHHHHHHHH------------T-CCEEEECCBTTTBSCCTTTC
T ss_pred CEEEECCCCCHhHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhc------------C-CceEEEEcChhhcCCCcCCc
Confidence 99999999999999999986 69999999999999998876521 1 27999999999988777899
Q ss_pred cEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhccccccCCCcccccC
Q 002345 777 DIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWT 855 (933)
Q Consensus 777 DlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~~~fRh~DHkFeWT 855 (933)
|+|++. +.|++.+....+.+++.++|+|| .+++.+++.....+ . .-....+.+.++
T Consensus 96 D~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~--~-------------------~~~~~~~~~~~~ 152 (202)
T 2kw5_A 96 EGIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQY--N-------------------TGGPKDLDLLPK 152 (202)
T ss_dssp SEEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGG--T-------------------SCCSSSGGGCCC
T ss_pred cEEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccC--C-------------------CCCCCcceeecC
Confidence 999995 45776555556666799999999 88888887542110 0 011224556789
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEeecC----CCCCCCCccceeEEEec
Q 002345 856 RDQFNCWATELAARHNYSVEFSGVGG----SGDREPGFASQIAVFRS 898 (933)
Q Consensus 856 reEF~~Was~LA~r~GYsVEF~GVG~----~p~~~~Gf~TQIAVF~R 898 (933)
++++..+++ ||.+....... .+.+..|....++...+
T Consensus 153 ~~~l~~~l~------Gf~v~~~~~~~~~~~~g~~~~~~~~~i~~~~~ 193 (202)
T 2kw5_A 153 LETLQSELP------SLNWLIANNLERNLDEGAYHQGKAALIQLLGQ 193 (202)
T ss_dssp HHHHHHHCS------SSCEEEEEEEEEECSCSSSSCCEEEEEEEEEC
T ss_pred HHHHHHHhc------CceEEEEEEEEeecCCCCCcccHHHHHHHHHH
Confidence 999997543 77774322111 12224466666665554
No 44
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.54 E-value=2.4e-14 Score=150.65 Aligned_cols=114 Identities=15% Similarity=0.210 Sum_probs=91.5
Q ss_pred CCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002345 675 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 754 (933)
Q Consensus 675 ~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~ 754 (933)
.|.+..+-++++.+... ...+|||||||+|.++..|++.+ .+|+|||+|+.|++.|++
T Consensus 22 Rp~yp~~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~----------------- 79 (257)
T 4hg2_A 22 RPRYPRALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALR----------------- 79 (257)
T ss_dssp CCCCCHHHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCC-----------------
T ss_pred CCCcHHHHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhh-----------------
Confidence 34444555566666543 45799999999999999999987 799999999999987732
Q ss_pred CCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 755 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 755 ~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
.+++++.++|++++++++++||+|+|..++||++.+ ..+ +++.|+|||| .+++.+.
T Consensus 80 -~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~--~~~-~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 80 -HPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD--RFW-AELRRVARPGAVFAAVTY 136 (257)
T ss_dssp -CTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH--HHH-HHHHHHEEEEEEEEEEEE
T ss_pred -cCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH--HHH-HHHHHHcCCCCEEEEEEC
Confidence 247999999999999999999999999999999733 344 5699999999 5555544
No 45
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.53 E-value=4.1e-13 Score=129.28 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=88.3
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+|||||||+|.++..+++.+ .+++|+|+++.+++.|++++ .++.++++|+.+++.+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~-----------------~~~~~~~~d~~~~~~~ 104 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQG---HDVLGTDLDPILIDYAKQDF-----------------PEARWVVGDLSVDQIS 104 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHC-----------------TTSEEEECCTTTSCCC
T ss_pred cCCCeEEEECCCCCHHHHHHHHCC---CcEEEEcCCHHHHHHHHHhC-----------------CCCcEEEcccccCCCC
Confidence 367899999999999999999986 69999999999999997753 2578999999988777
Q ss_pred CCCccEEEEc-cccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 773 LHGFDIGTCL-EVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 773 ~~sFDlVVc~-eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.+.||+|++. .+++|++++....+.+.+.++|+|| .+++.+++
T Consensus 105 ~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~ 149 (195)
T 3cgg_A 105 ETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA 149 (195)
T ss_dssp CCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred CCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 7899999998 7999998666666667799999999 77777654
No 46
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.53 E-value=5e-14 Score=143.34 Aligned_cols=124 Identities=18% Similarity=0.184 Sum_probs=99.1
Q ss_pred CchHHHHHHHHHHHhh-cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002345 676 PPLSKQRVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 754 (933)
Q Consensus 676 PPLy~qRve~Ild~L~-~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~ 754 (933)
.|.+......+++.+. ..++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.|++++... +
T Consensus 27 ~~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~-----------~ 93 (257)
T 3f4k_A 27 GPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKA-----------N 93 (257)
T ss_dssp SSCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHT-----------T
T ss_pred CCCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHc-----------C
Confidence 3455555566666663 34667999999999999999999873 49999999999999999876531 1
Q ss_pred CCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 755 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 755 ~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
...+++++++|+.++++..++||+|++..+++|++ ....+ +++.++|+|| .+++.+++
T Consensus 94 ~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~l-~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 94 CADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIG--FERGM-NEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp CTTTEEEEECCTTSCSSCTTCEEEEEEESCSCCCC--HHHHH-HHHHTTEEEEEEEEEEEEE
T ss_pred CCCceEEEECChhhCCCCCCCEEEEEecChHhhcC--HHHHH-HHHHHHcCCCcEEEEEEee
Confidence 22359999999999888888999999999999994 33344 5699999999 88888865
No 47
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.52 E-value=1.3e-13 Score=145.77 Aligned_cols=119 Identities=18% Similarity=0.309 Sum_probs=95.8
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcC-CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~-g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
.++.+++.+...++.+|||||||+|.++..+++. + .+|+|+|+|+.+++.|++++.. .....+++
T Consensus 78 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~-----------~~~~~~v~ 143 (318)
T 2fk8_A 78 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD---VNVIGLTLSKNQHARCEQVLAS-----------IDTNRSRQ 143 (318)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHT-----------SCCSSCEE
T ss_pred HHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHh-----------cCCCCceE
Confidence 4445555555567889999999999999999987 5 6999999999999999987652 11224699
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 761 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 761 fi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
+..+|+.+++ +.||+|++..+++|++++....+.+++.++|+|| .+++.+++..
T Consensus 144 ~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 198 (318)
T 2fk8_A 144 VLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY 198 (318)
T ss_dssp EEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred EEECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 9999998875 6899999999999997544445556699999999 8888888754
No 48
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.52 E-value=4.1e-14 Score=147.01 Aligned_cols=109 Identities=12% Similarity=0.216 Sum_probs=91.4
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+++.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|++++ +++.+.++|
T Consensus 49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~-----------------~~~~~~~~d 108 (279)
T 3ccf_A 49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQSG---AEVLGTDNAATMIEKARQNY-----------------PHLHFDVAD 108 (279)
T ss_dssp HHHHHCCCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHC-----------------TTSCEEECC
T ss_pred HHHHhCCCCCCEEEEecCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHhhC-----------------CCCEEEECC
Confidence 4455555678899999999999999999855 79999999999999997652 367899999
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 766 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 766 aedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
+.++++ .++||+|++..+++|++ +....+. ++.++|+|| .+++.+++..
T Consensus 109 ~~~~~~-~~~fD~v~~~~~l~~~~-d~~~~l~-~~~~~LkpgG~l~~~~~~~~ 158 (279)
T 3ccf_A 109 ARNFRV-DKPLDAVFSNAMLHWVK-EPEAAIA-SIHQALKSGGRFVAEFGGKG 158 (279)
T ss_dssp TTTCCC-SSCEEEEEEESCGGGCS-CHHHHHH-HHHHHEEEEEEEEEEEECTT
T ss_pred hhhCCc-CCCcCEEEEcchhhhCc-CHHHHHH-HHHHhcCCCcEEEEEecCCc
Confidence 999876 57899999999999998 5545554 599999999 8888888753
No 49
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.52 E-value=1e-13 Score=144.35 Aligned_cols=111 Identities=11% Similarity=0.093 Sum_probs=92.8
Q ss_pred HHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc
Q 002345 687 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 766 (933)
Q Consensus 687 ld~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDa 766 (933)
++.+...++.+|||+|||+|.++..|++.+ .+|+|+|+|+.+++.|++++.. .+. +++++++|+
T Consensus 113 ~~~~~~~~~~~vLD~GcG~G~~~~~l~~~g---~~v~~vD~s~~~~~~a~~~~~~------------~~~-~~~~~~~d~ 176 (286)
T 3m70_A 113 VDAAKIISPCKVLDLGCGQGRNSLYLSLLG---YDVTSWDHNENSIAFLNETKEK------------ENL-NISTALYDI 176 (286)
T ss_dssp HHHHHHSCSCEEEEESCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH------------TTC-CEEEEECCG
T ss_pred HHHhhccCCCcEEEECCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHH------------cCC-ceEEEEecc
Confidence 344445578899999999999999999987 6999999999999999987652 223 899999999
Q ss_pred cccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 767 TVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 767 edLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
.+++. .+.||+|++..+++|++++....+.+.+.++|+|| .+++.+.
T Consensus 177 ~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 177 NAANI-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp GGCCC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccc-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 98776 78899999999999998766666777899999999 5555544
No 50
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.52 E-value=4.9e-14 Score=144.72 Aligned_cols=115 Identities=23% Similarity=0.317 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHhhc--CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002345 678 LSKQRVEYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 755 (933)
Q Consensus 678 Ly~qRve~Ild~L~~--~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~ 755 (933)
.+....+.+.+.+.. .++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|++++
T Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~---------------- 92 (263)
T 3pfg_A 32 DYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRN---------------- 92 (263)
T ss_dssp CHHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHC----------------
T ss_pred CHHHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhC----------------
Confidence 344444555555432 256899999999999999999987 68999999999999998752
Q ss_pred CccEEEEEcCccccCCCCCCccEEEEcc-ccccCCh-hHHHHHHHHHHHccCCC-EEEEEe
Q 002345 756 VKSAVLFDGSITVFDSRLHGFDIGTCLE-VIEHMEE-DEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 756 ~~nVefi~GDaedLp~~~~sFDlVVc~e-VLEHLpd-D~l~aL~eeI~rlLKPG-~LIITT 813 (933)
.++.++++|+.+++. .+.||+|+|.. +++|++. +....+.+++.++|+|| .++|.+
T Consensus 93 -~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 93 -PDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp -TTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred -CCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 268999999999877 68999999998 9999973 34445556799999999 666654
No 51
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.51 E-value=1.7e-13 Score=141.72 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=91.4
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~- 771 (933)
.++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.|++++.. .....++.++++|+.+.++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~-----------~~~~~~v~~~~~d~~~~~~~ 129 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARN-----------MKRRFKVFFRAQDSYGRHMD 129 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHT-----------SCCSSEEEEEESCTTTSCCC
T ss_pred CCCCeEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHh-----------cCCCccEEEEECCccccccC
Confidence 467899999999999999888875 25999999999999999987652 1122479999999998877
Q ss_pred CCCCccEEEEcccccc--CChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 772 RLHGFDIGTCLEVIEH--MEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEH--LpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
..+.||+|++..++|| ...+....+.+++.++|+|| .+++++|+..
T Consensus 130 ~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 178 (298)
T 1ri5_A 130 LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD 178 (298)
T ss_dssp CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred CCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence 5778999999999988 33344455556799999999 8999999853
No 52
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.51 E-value=1e-13 Score=140.85 Aligned_cols=111 Identities=18% Similarity=0.292 Sum_probs=91.9
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+++.+...++.+|||||||+|.++..+++.. +..+|+|+|+|+.|++.|+++. +++++.++
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~-----------------~~~~~~~~ 85 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRL-----------------PNTNFGKA 85 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHS-----------------TTSEEEEC
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----------------CCcEEEEC
Confidence 45555555677899999999999999998873 1268999999999999997651 36899999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 765 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
|+.+++ ..++||+|++..+++|++ +....+. ++.++|+|| .+++.+|+.
T Consensus 86 d~~~~~-~~~~fD~v~~~~~l~~~~-~~~~~l~-~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 86 DLATWK-PAQKADLLYANAVFQWVP-DHLAVLS-QLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp CTTTCC-CSSCEEEEEEESCGGGST-THHHHHH-HHGGGEEEEEEEEEEEECC
T ss_pred ChhhcC-ccCCcCEEEEeCchhhCC-CHHHHHH-HHHHhcCCCeEEEEEeCCC
Confidence 999887 678899999999999997 5545554 599999999 888888865
No 53
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.51 E-value=1e-13 Score=137.96 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=91.5
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++.... .......++++..+|+.++++..
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~d~~~~~~~~ 99 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKG---YSVTGIDINSEAIRLAETAARSPG-------LNQKTGGKAEFKVENASSLSFHD 99 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTTCCS-------CCSSSSCEEEEEECCTTSCCSCT
T ss_pred CCCeEEEECCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcC-------CccccCcceEEEEecccccCCCC
Confidence 67899999999999999999986 699999999999999988754210 00111237899999999988888
Q ss_pred CCccEEEEccccccCCh-hHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 774 HGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpd-D~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
+.||+|++..+++|+++ +....+.+++.++|+|| .+++.+++..
T Consensus 100 ~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (235)
T 3sm3_A 100 SSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQN 145 (235)
T ss_dssp TCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred CceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 89999999999999973 22335556799999999 7888877653
No 54
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.51 E-value=1.4e-13 Score=138.03 Aligned_cols=103 Identities=19% Similarity=0.328 Sum_probs=85.0
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|++++ +++.++++|+.+++.
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~~~- 97 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL-----------------PDATLHQGDMRDFRL- 97 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC-----------------TTCEEEECCTTTCCC-
T ss_pred CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC-----------------CCCEEEECCHHHccc-
Confidence 467899999999999999999886 58999999999999997752 258999999998876
Q ss_pred CCCccEEEEcc-ccccCCh-hHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 773 LHGFDIGTCLE-VIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 773 ~~sFDlVVc~e-VLEHLpd-D~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
...||+|+|.. +++|++. +....+.+++.++|+|| .+++++++.
T Consensus 98 ~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 98 GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 67899999654 9999963 34455556799999999 777776654
No 55
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.51 E-value=5.3e-13 Score=134.09 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 678 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 678 Ly~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
.+....+++.+.+. ++.+|||||||+|.++..+++. .+|+|+|+|+.+++.|++++.. ...
T Consensus 19 ~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~-------------~~~ 79 (243)
T 3d2l_A 19 PYPEWVAWVLEQVE--PGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAME-------------TNR 79 (243)
T ss_dssp CHHHHHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHH-------------TTC
T ss_pred cHHHHHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhh-------------cCC
Confidence 34455566666654 4589999999999999999876 4899999999999999887642 114
Q ss_pred cEEEEEcCccccCCCCCCccEEEEcc-ccccCC-hhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 758 SAVLFDGSITVFDSRLHGFDIGTCLE-VIEHME-EDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 758 nVefi~GDaedLp~~~~sFDlVVc~e-VLEHLp-dD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
++++.++|+.+++.. .+||+|++.. +++|+. .+....+.+++.++|+|| .+++.+++.
T Consensus 80 ~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 140 (243)
T 3d2l_A 80 HVDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSP 140 (243)
T ss_dssp CCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred ceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence 689999999988765 7899999986 999994 334445556799999999 888888874
No 56
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.49 E-value=5.4e-13 Score=137.28 Aligned_cols=122 Identities=12% Similarity=0.071 Sum_probs=93.2
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChH------HHHHHHHHHhhhhhcccccCCCCCC
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQK------SLSRAAKIIHSKLSKKLDAAVPCTD 755 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~e------mLe~ArkrL~a~ls~~~~~~~Pr~~ 755 (933)
.+..+++.+...++.+|||||||+|.++..+++..++..+|+|+|+|+. +++.|++++.. ...
T Consensus 31 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~-----------~~~ 99 (275)
T 3bkx_A 31 HRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLA-----------GPL 99 (275)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHT-----------STT
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHh-----------cCC
Confidence 3445666666678899999999999999999987323368999999997 99999887652 112
Q ss_pred CccEEEEEcC---ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 756 VKSAVLFDGS---ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 756 ~~nVefi~GD---aedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
..++++.++| ...+++..++||+|++..+++|+++.. . +.+.+.++++|| .+++.++..
T Consensus 100 ~~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~-~-~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 100 GDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASAN-A-LALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp GGGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHH-H-HHHHHHHHTTTCSEEEEEEECS
T ss_pred CCceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHH-H-HHHHHHHHhCCCCEEEEEEecC
Confidence 2579999998 445556678999999999999998443 3 566567777767 777776654
No 57
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.49 E-value=3.5e-13 Score=133.17 Aligned_cols=156 Identities=17% Similarity=0.123 Sum_probs=107.6
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
..+++.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|+++ .++.+..
T Consensus 42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------------------~~~~~~~ 100 (227)
T 3e8s_A 42 QAILLAILGRQPERVLDLGCGEGWLLRALADRG---IEAVGVDGDRTLVDAARAA------------------GAGEVHL 100 (227)
T ss_dssp HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHT------------------CSSCEEE
T ss_pred HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCC---CEEEEEcCCHHHHHHHHHh------------------cccccch
Confidence 345556666677999999999999999999986 6899999999999999763 2567788
Q ss_pred cCcccc---CCCC-CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchh
Q 002345 764 GSITVF---DSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKT 838 (933)
Q Consensus 764 GDaedL---p~~~-~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~ 838 (933)
+|+.++ +... ..||+|++..+++ .. +....+ +++.++|+|| .+++.+++......- .+...-.
T Consensus 101 ~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~-~~~~~l-~~~~~~L~pgG~l~~~~~~~~~~~~~---------~~~~~~~ 168 (227)
T 3e8s_A 101 ASYAQLAEAKVPVGKDYDLICANFALL-HQ-DIIELL-SAMRTLLVPGGALVIQTLHPWSVADG---------DYQDGWR 168 (227)
T ss_dssp CCHHHHHTTCSCCCCCEEEEEEESCCC-SS-CCHHHH-HHHHHTEEEEEEEEEEECCTTTTCTT---------CCSCEEE
T ss_pred hhHHhhcccccccCCCccEEEECchhh-hh-hHHHHH-HHHHHHhCCCeEEEEEecCccccCcc---------ccccccc
Confidence 888776 4433 4599999999999 44 443454 4699999999 888999876422100 0000000
Q ss_pred hhcccccc---CCCcccccCHHHHHHHHHHHHHHcCcEEEE
Q 002345 839 QLQSCKFR---NHDHKFEWTRDQFNCWATELAARHNYSVEF 876 (933)
Q Consensus 839 g~~~~~fR---h~DHkFeWTreEF~~Was~LA~r~GYsVEF 876 (933)
...|..+. ...+...++.+++. .++.+.||.+.-
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~aGf~~~~ 205 (227)
T 3e8s_A 169 EESFAGFAGDWQPMPWYFRTLASWL----NALDMAGLRLVS 205 (227)
T ss_dssp EECCTTSSSCCCCEEEEECCHHHHH----HHHHHTTEEEEE
T ss_pred hhhhhccccCcccceEEEecHHHHH----HHHHHcCCeEEE
Confidence 00122221 12334557999988 466788998843
No 58
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.48 E-value=3e-13 Score=142.12 Aligned_cols=148 Identities=10% Similarity=0.149 Sum_probs=97.8
Q ss_pred CCCEEEEEcCCcChHHH----HHhcCCCCCce--EEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc--EEEEEcC
Q 002345 694 CATTLVDFGCGSGSLLD----SLLDYPTALEK--IVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS--AVLFDGS 765 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~----~LAr~g~~f~~--VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~n--Vefi~GD 765 (933)
++.+|||||||+|.++. .++..++ ... ++|+|+|++|++.|++++.. ..+..+ +.+..++
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~-~~~v~~~~vD~S~~ml~~a~~~~~~-----------~~~~~~v~~~~~~~~ 119 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYP-GVCINNEVVEPSAEQIAKYKELVAK-----------TSNLENVKFAWHKET 119 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHST-TCEEEEEEECSCHHHHHHHHHHHHT-----------CSSCTTEEEEEECSC
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCC-CceeeEEEEeCCHHHHHHHHHHHHh-----------ccCCCcceEEEEecc
Confidence 45799999999997543 3333221 133 49999999999999887642 112234 4556777
Q ss_pred ccccC------CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc--hhHHHHhhccCcCCCCCcc
Q 002345 766 ITVFD------SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE--YNAILQKSSSTIQEDDPDE 836 (933)
Q Consensus 766 aedLp------~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e--fNs~f~~l~~~g~~eYpdE 836 (933)
+++++ +.+++||+|++..++||++ ++...+. ++.++|||| .+++.+++.. +...+...
T Consensus 120 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~-d~~~~l~-~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~----------- 186 (292)
T 2aot_A 120 SSEYQSRMLEKKELQKWDFIHMIQMLYYVK-DIPATLK-FFHSLLGTNAKMLIIVVSGSSGWDKLWKKY----------- 186 (292)
T ss_dssp HHHHHHHHHTTTCCCCEEEEEEESCGGGCS-CHHHHHH-HHHHTEEEEEEEEEEEECTTSHHHHHHHHH-----------
T ss_pred hhhhhhhhccccCCCceeEEEEeeeeeecC-CHHHHHH-HHHHHcCCCcEEEEEEecCCccHHHHHHHH-----------
Confidence 76553 4567899999999999998 6656665 599999999 7776666542 22233221
Q ss_pred hhhhccccccCCCcccccCHHHHHHHHHHHHHHcCcEEE
Q 002345 837 KTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 875 (933)
Q Consensus 837 p~g~~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsVE 875 (933)
+..++...|...++.+++..| ..+.||.+.
T Consensus 187 -----~~~~~~~~~~~~~~~~~~~~~----l~~aGf~~~ 216 (292)
T 2aot_A 187 -----GSRFPQDDLCQYITSDDLTQM----LDNLGLKYE 216 (292)
T ss_dssp -----GGGSCCCTTCCCCCHHHHHHH----HHHHTCCEE
T ss_pred -----HHhccCCCcccCCCHHHHHHH----HHHCCCceE
Confidence 111222245556788888854 456688664
No 59
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.47 E-value=2.1e-13 Score=134.35 Aligned_cols=109 Identities=16% Similarity=0.214 Sum_probs=89.3
Q ss_pred CCCCEEEEEcCCcChH-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 693 SCATTLVDFGCGSGSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~f-L~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
.++.+|||+|||+|.+ +..+++.+ .+|+|+|+|+.|++.|++++... ..++++.++|+.+++.
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~-------------~~~~~~~~~d~~~~~~ 85 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDG---YKTYGIEISDLQLKKAENFSREN-------------NFKLNISKGDIRKLPF 85 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTT---CEEEEEECCHHHHHHHHHHHHHH-------------TCCCCEEECCTTSCCS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhc-------------CCceEEEECchhhCCC
Confidence 3578999999999997 55666655 69999999999999998876521 1368899999999887
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
..+.||+|++..+++|++.+....+.+++.++|+|| .+++.+++..
T Consensus 86 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 86 KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 788999999999999997555556666799999999 8888877643
No 60
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.47 E-value=4.7e-14 Score=155.33 Aligned_cols=153 Identities=14% Similarity=0.182 Sum_probs=109.0
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
..+.+++.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|+++- .......+
T Consensus 95 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g---~~v~gvD~s~~~~~~a~~~~--------------~~~~~~~~ 157 (416)
T 4e2x_A 95 LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAG---VRHLGFEPSSGVAAKAREKG--------------IRVRTDFF 157 (416)
T ss_dssp HHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTT---CEEEEECCCHHHHHHHHTTT--------------CCEECSCC
T ss_pred HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcC---CcEEEECCCHHHHHHHHHcC--------------CCcceeee
Confidence 34445555555577899999999999999999987 69999999999999997530 00001123
Q ss_pred EEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhh
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQL 840 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~ 840 (933)
..+++..+++.+++||+|++..++||++ ++...+. ++.++|||| .+++.+|+.. ..+... .
T Consensus 158 ~~~~~~~l~~~~~~fD~I~~~~vl~h~~-d~~~~l~-~~~r~LkpgG~l~i~~~~~~--~~~~~~------~-------- 219 (416)
T 4e2x_A 158 EKATADDVRRTEGPANVIYAANTLCHIP-YVQSVLE-GVDALLAPDGVFVFEDPYLG--DIVAKT------S-------- 219 (416)
T ss_dssp SHHHHHHHHHHHCCEEEEEEESCGGGCT-THHHHHH-HHHHHEEEEEEEEEEEECHH--HHHHHT------C--------
T ss_pred chhhHhhcccCCCCEEEEEECChHHhcC-CHHHHHH-HHHHHcCCCeEEEEEeCChH--Hhhhhc------c--------
Confidence 3345555556678999999999999998 6655555 599999999 8889999853 222211 0
Q ss_pred ccccccCCCcccccCHHHHHHHHHHHHHHcCcEEE
Q 002345 841 QSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 875 (933)
Q Consensus 841 ~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsVE 875 (933)
+..+ .+.|...++.+++. .++.+.||.+.
T Consensus 220 -~~~~-~~~~~~~~s~~~l~----~ll~~aGf~~~ 248 (416)
T 4e2x_A 220 -FDQI-FDEHFFLFSATSVQ----GMAQRCGFELV 248 (416)
T ss_dssp -GGGC-STTCCEECCHHHHH----HHHHHTTEEEE
T ss_pred -hhhh-hhhhhhcCCHHHHH----HHHHHcCCEEE
Confidence 1111 14566678999988 56788898873
No 61
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.46 E-value=1.7e-13 Score=139.00 Aligned_cols=157 Identities=13% Similarity=0.107 Sum_probs=110.1
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|++++. ..+++++++|+.+++..
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~---~~v~gvD~s~~~~~~a~~~~~---------------~~~~~~~~~d~~~~~~~ 116 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAAKENT---------------AANISYRLLDGLVPEQA 116 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHS---SCEEEEESCHHHHHHHHHHSC---------------CTTEEEEECCTTCHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhC---CCEEEEECCHHHHHHHHHhCc---------------ccCceEEECcccccccc
Confidence 356799999999999999999987 489999999999999987631 23799999999886543
Q ss_pred C-----CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCcCCCCCcchhhhcccccc
Q 002345 773 L-----HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFR 846 (933)
Q Consensus 773 ~-----~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~~l~~~g~~eYpdEp~g~~~~~fR 846 (933)
. ..||+|++..++||++++....+.+++.++|||| .++|..+.......+..+..... -+..+ ....++
T Consensus 117 ~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~ 191 (245)
T 3ggd_A 117 AQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYG--QLPYE---LLLVME 191 (245)
T ss_dssp HHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHS--SCCHH---HHHHHT
T ss_pred cccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCC--CCchh---hhhccc
Confidence 2 2499999999999999665666667799999999 77888877654444333210000 00000 011122
Q ss_pred CCCcccccCHHHHHHHHHHHHHHcCcEEEEEe
Q 002345 847 NHDHKFEWTRDQFNCWATELAARHNYSVEFSG 878 (933)
Q Consensus 847 h~DHkFeWTreEF~~Was~LA~r~GYsVEF~G 878 (933)
+......++++++..++ .|+++.-.+
T Consensus 192 ~~~~~~~~~~~~~~~~~------aGf~~~~~~ 217 (245)
T 3ggd_A 192 HGIRPGIFTAEDIELYF------PDFEILSQG 217 (245)
T ss_dssp TTCCCCCCCHHHHHHHC------TTEEEEEEE
T ss_pred cCCCCCccCHHHHHHHh------CCCEEEecc
Confidence 33333447999998653 698875433
No 62
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.46 E-value=1e-12 Score=131.88 Aligned_cols=145 Identities=15% Similarity=0.154 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002345 679 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 758 (933)
Q Consensus 679 y~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~n 758 (933)
+...++.+...+ ++.+|||||||+|.++..+++. +|+|+|+.+++.|+++ +
T Consensus 35 ~~~~~~~l~~~~---~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------------------~ 85 (219)
T 1vlm_A 35 YLSELQAVKCLL---PEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------------------G 85 (219)
T ss_dssp HHHHHHHHHHHC---CSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------------------T
T ss_pred HHHHHHHHHHhC---CCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------------------C
Confidence 344444444333 3789999999999999988653 9999999999999652 5
Q ss_pred EEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchh--HHHHhhccCcCCCCCc
Q 002345 759 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN--AILQKSSSTIQEDDPD 835 (933)
Q Consensus 759 Vefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efN--s~f~~l~~~g~~eYpd 835 (933)
++++++|+.+++...+.||+|++..+++|++ +....+ +++.++|+|| .+++++++.... ..+...
T Consensus 86 ~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l-~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~---------- 153 (219)
T 1vlm_A 86 VFVLKGTAENLPLKDESFDFALMVTTICFVD-DPERAL-KEAYRILKKGGYLIVGIVDRESFLGREYEKN---------- 153 (219)
T ss_dssp CEEEECBTTBCCSCTTCEEEEEEESCGGGSS-CHHHHH-HHHHHHEEEEEEEEEEEECSSSHHHHHHHHT----------
T ss_pred CEEEEcccccCCCCCCCeeEEEEcchHhhcc-CHHHHH-HHHHHHcCCCcEEEEEEeCCccHHHHHHHHH----------
Confidence 7899999998887778999999999999997 554555 4699999999 888888876421 111110
Q ss_pred chhhhccccccCCCcccccCHHHHHHHHHHHHHHcCcEE
Q 002345 836 EKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV 874 (933)
Q Consensus 836 Ep~g~~~~~fRh~DHkFeWTreEF~~Was~LA~r~GYsV 874 (933)
........|...++++++.. +..+.||.+
T Consensus 154 ------~~~~~~~~~~~~~~~~~l~~----~l~~~Gf~~ 182 (219)
T 1vlm_A 154 ------KEKSVFYKNARFFSTEELMD----LMRKAGFEE 182 (219)
T ss_dssp ------TTC-CCSTTCCCCCHHHHHH----HHHHTTCEE
T ss_pred ------hcCcchhcccccCCHHHHHH----HHHHCCCeE
Confidence 01111223456689999995 566789977
No 63
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.45 E-value=2.3e-13 Score=140.40 Aligned_cols=109 Identities=19% Similarity=0.281 Sum_probs=92.0
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+|||||||+|.++..+++.+ +..+|+|+|+|+.+++.|++++.. .+..++++..+|+.++++.
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~~~~~~~d~~~~~~~ 102 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEK------------NGIKNVKFLQANIFSLPFE 102 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH------------TTCCSEEEEECCGGGCCSC
T ss_pred CCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH------------cCCCCcEEEEcccccCCCC
Confidence 467899999999999999999874 237999999999999999987652 2345799999999998888
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
.++||+|++..+++|++ ++...+ +++.++|+|| .+++.+++.
T Consensus 103 ~~~fD~v~~~~~l~~~~-~~~~~l-~~~~~~L~pgG~l~~~~~~~ 145 (276)
T 3mgg_A 103 DSSFDHIFVCFVLEHLQ-SPEEAL-KSLKKVLKPGGTITVIEGDH 145 (276)
T ss_dssp TTCEEEEEEESCGGGCS-CHHHHH-HHHHHHEEEEEEEEEEEECG
T ss_pred CCCeeEEEEechhhhcC-CHHHHH-HHHHHHcCCCcEEEEEEcCC
Confidence 88999999999999998 444454 5699999999 777877653
No 64
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.45 E-value=1.1e-12 Score=139.21 Aligned_cols=121 Identities=17% Similarity=0.093 Sum_probs=90.2
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 681 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 681 qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
.+.+.+++.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|++++.. ......
T Consensus 32 ~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~-------------~~v~~~ 95 (261)
T 3iv6_A 32 SDRENDIFLENIVPGSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALAD-------------RCVTID 95 (261)
T ss_dssp CHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSS-------------SCCEEE
T ss_pred HHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHh-------------ccceee
Confidence 345567777777788999999999999999999987 6999999999999999887531 112233
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002345 761 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 818 (933)
Q Consensus 761 fi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ef 818 (933)
+...+........+.||+|++..+++|+..+....+.+.+.++| || .++++.+...|
T Consensus 96 ~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~ 153 (261)
T 3iv6_A 96 LLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGFY 153 (261)
T ss_dssp ECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSCC
T ss_pred eeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCcc
Confidence 33222200111246899999999999998666655666799999 99 88888876544
No 65
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.45 E-value=3.6e-13 Score=139.10 Aligned_cols=112 Identities=15% Similarity=0.147 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 681 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 681 qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
...+.+.+.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|++ . .+++
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~-----------------~-~~~~ 79 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG---LFVYAVEPSIVMRQQAVV-----------------H-PQVE 79 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT---CEEEEECSCHHHHHSSCC-----------------C-TTEE
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC---CEEEEEeCCHHHHHHHHh-----------------c-cCCE
Confidence 345566777766678999999999999999999865 799999999999987743 1 1899
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 761 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 761 fi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
++++|+.++++..++||+|++..+++|++ +....+. ++.++|| | .+++.+++.
T Consensus 80 ~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~-~~~~~Lk-gG~~~~~~~~~ 133 (261)
T 3ege_A 80 WFTGYAENLALPDKSVDGVISILAIHHFS-HLEKSFQ-EMQRIIR-DGTIVLLTFDI 133 (261)
T ss_dssp EECCCTTSCCSCTTCBSEEEEESCGGGCS-SHHHHHH-HHHHHBC-SSCEEEEEECG
T ss_pred EEECchhhCCCCCCCEeEEEEcchHhhcc-CHHHHHH-HHHHHhC-CcEEEEEEcCC
Confidence 99999999988888999999999999997 5555555 5999999 8 677777764
No 66
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.45 E-value=5.6e-13 Score=132.58 Aligned_cols=107 Identities=24% Similarity=0.335 Sum_probs=88.7
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
++.+|||||||+|.++..+++.+ .+++|+|+|+.+++.|++++.. .+ .+++++++|+.+++...
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~------------~~-~~~~~~~~d~~~~~~~~ 101 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKS------------RE-SNVEFIVGDARKLSFED 101 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH------------TT-CCCEEEECCTTSCCSCT
T ss_pred CCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHh------------cC-CCceEEECchhcCCCCC
Confidence 47899999999999999999987 4999999999999999887642 12 57899999999887777
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
++||+|++..++++........+.+++.++|+|| .+++.+|+.
T Consensus 102 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 145 (227)
T 1ve3_A 102 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 145 (227)
T ss_dssp TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence 8999999999965555444445556799999999 888888873
No 67
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.45 E-value=4.4e-13 Score=140.85 Aligned_cols=122 Identities=19% Similarity=0.207 Sum_probs=92.6
Q ss_pred CchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002345 676 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 755 (933)
Q Consensus 676 PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~ 755 (933)
|......++.+..... .++.+|||||||+|.++..|++...+..+|+|+|+|+.+++.|++++... ...
T Consensus 19 p~y~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----------~~~ 87 (299)
T 3g5t_A 19 PSYPSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS----------PDT 87 (299)
T ss_dssp CCCCHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC----------C-C
T ss_pred CCCCHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc----------cCC
Confidence 3333444455554433 46789999999999999999952112379999999999999999876531 023
Q ss_pred CccEEEEEcCccccCCCC------CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002345 756 VKSAVLFDGSITVFDSRL------HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 811 (933)
Q Consensus 756 ~~nVefi~GDaedLp~~~------~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LII 811 (933)
..+++++++|+.++++.. ++||+|++..++||+ +....+ +++.++|+|| .+++
T Consensus 88 ~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~--~~~~~l-~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 88 YKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF--DFEKFQ-RSAYANLRKDGTIAI 147 (299)
T ss_dssp CTTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS--CHHHHH-HHHHHHEEEEEEEEE
T ss_pred CCceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh--CHHHHH-HHHHHhcCCCcEEEE
Confidence 468999999999988766 799999999999999 444454 4699999999 6655
No 68
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.45 E-value=6.8e-13 Score=138.93 Aligned_cols=118 Identities=21% Similarity=0.363 Sum_probs=95.2
Q ss_pred HHHHHHHHh-hcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 682 RVEYALQHI-KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 682 Rve~Ild~L-~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
.+.++.+.+ ...++.+|||||||+|.++..|++..+...+|+|+|+|+.+++.|++++.. ...+++
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------------~~~~v~ 75 (284)
T 3gu3_A 9 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL-------------LPYDSE 75 (284)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHS-------------SSSEEE
T ss_pred HHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHh-------------cCCceE
Confidence 344555554 345678999999999999999998742226999999999999999887641 223899
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 761 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 761 fi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+.++|+.++++ .++||+|++..+++|++ +....+. ++.++|+|| .+++.+|+
T Consensus 76 ~~~~d~~~~~~-~~~fD~v~~~~~l~~~~-~~~~~l~-~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 76 FLEGDATEIEL-NDKYDIAICHAFLLHMT-TPETMLQ-KMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp EEESCTTTCCC-SSCEEEEEEESCGGGCS-SHHHHHH-HHHHTEEEEEEEEEEECC
T ss_pred EEEcchhhcCc-CCCeeEEEECChhhcCC-CHHHHHH-HHHHHcCCCCEEEEEecc
Confidence 99999999877 46899999999999998 5545554 699999999 88888887
No 69
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.44 E-value=4e-13 Score=131.92 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=90.0
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.|+++.. ...++.+.++|+.++++.
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~--------------~~~~i~~~~~d~~~~~~~ 104 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYA--------------HVPQLRWETMDVRKLDFP 104 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTT--------------TCTTCEEEECCTTSCCSC
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhcc--------------cCCCcEEEEcchhcCCCC
Confidence 4678999999999999999999863 489999999999999987643 234789999999998877
Q ss_pred CCCccEEEEccccccCC-------------hhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 773 LHGFDIGTCLEVIEHME-------------EDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLp-------------dD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
.++||+|++..+++|+. .+....+.+++.++|+|| .+++.+++.
T Consensus 105 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 105 SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 78999999999998875 233345556799999999 888888875
No 70
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.44 E-value=1e-12 Score=133.61 Aligned_cols=118 Identities=19% Similarity=0.359 Sum_probs=92.8
Q ss_pred HHHHHHHHhhc---CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002345 682 RVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 758 (933)
Q Consensus 682 Rve~Ild~L~~---~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~n 758 (933)
..+++.+.+.. .++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.|++++.. ...+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~-------------~~~~ 89 (252)
T 1wzn_A 26 EIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKE-------------RNLK 89 (252)
T ss_dssp HHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCC
T ss_pred HHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHh-------------cCCc
Confidence 34445444432 456899999999999999999986 6899999999999999987642 1136
Q ss_pred EEEEEcCccccCCCCCCccEEEEc-cccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 759 AVLFDGSITVFDSRLHGFDIGTCL-EVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 759 Vefi~GDaedLp~~~~sFDlVVc~-eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+.++++|+.+++.. ..||+|+|. .+++|++.+....+.+.+.++|+|| .+++.+|+.
T Consensus 90 v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 148 (252)
T 1wzn_A 90 IEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCW 148 (252)
T ss_dssp CEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred eEEEECChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccch
Confidence 89999999987754 689999997 4677777555566667799999999 888888874
No 71
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.43 E-value=1.7e-12 Score=137.22 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=88.9
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+|||||||+|.++..|+....+..+|+|+|+|+.+++.|++++.. .....+++++++|+.++++.
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----------~~~~~~v~~~~~d~~~~~~~ 185 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAG-----------HALAGQITLHRQDAWKLDTR 185 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTT-----------STTGGGEEEEECCGGGCCCC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHh-----------cCCCCceEEEECchhcCCcc
Confidence 4678999999999999999852221237999999999999999987652 11233599999999998876
Q ss_pred CCCccEEEEccccccCChhHH-HHHHHHHHHccCCC-EEEEEecCC
Q 002345 773 LHGFDIGTCLEVIEHMEEDEA-SQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l-~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+.||+|++..+++|+++... ..+.+++.++|+|| .+++.+...
T Consensus 186 -~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 186 -EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp -SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred -CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 89999999999999974432 23556799999999 777777553
No 72
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.42 E-value=1.2e-12 Score=125.84 Aligned_cols=127 Identities=12% Similarity=0.116 Sum_probs=97.7
Q ss_pred cCCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002345 674 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 753 (933)
Q Consensus 674 F~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr 753 (933)
|.++......+.+++.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++..
T Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~------------ 96 (194)
T 1dus_A 32 FSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKL------------ 96 (194)
T ss_dssp TTTTSCCHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHH------------
T ss_pred CCccccchHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHH------------
Confidence 3444322334556677766678899999999999999999885 7999999999999999987652
Q ss_pred CCCcc--EEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 754 TDVKS--AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 754 ~~~~n--Vefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
.+..+ +++.++|+.+.. ..+.||+|++..+++|.. +....+.+.+.++|+|| .+++.+++..
T Consensus 97 ~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 161 (194)
T 1dus_A 97 NNLDNYDIRVVHSDLYENV-KDRKYNKIITNPPIRAGK-EVLHRIIEEGKELLKDNGEIWVVIQTKQ 161 (194)
T ss_dssp TTCTTSCEEEEECSTTTTC-TTSCEEEEEECCCSTTCH-HHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred cCCCccceEEEECchhccc-ccCCceEEEECCCcccch-hHHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 23344 999999998743 467899999999888754 33445556699999999 8888888764
No 73
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.42 E-value=1.8e-13 Score=158.45 Aligned_cols=109 Identities=21% Similarity=0.235 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--CC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--DS 771 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL--p~ 771 (933)
++.+|||||||.|.++..|++.| .+|+|||+|+.+|+.|+.... ..+..+++|.+++++++ ..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~g---a~V~giD~~~~~i~~a~~~a~------------~~~~~~~~~~~~~~~~~~~~~ 130 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKG---ATIVGIDFQQENINVCRALAE------------ENPDFAAEFRVGRIEEVIAAL 130 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHH------------TSTTSEEEEEECCHHHHHHHC
T ss_pred CCCeEEEECCCCcHHHHHHHhCC---CEEEEECCCHHHHHHHHHHHH------------hcCCCceEEEECCHHHHhhhc
Confidence 56799999999999999999998 799999999999999987654 22345899999999987 34
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC--EEEEEecCCc
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPNYE 817 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG--~LIITTPN~e 817 (933)
..+.||+|+|++||||++++........+++.|+++ .++++..-.+
T Consensus 131 ~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e 178 (569)
T 4azs_A 131 EEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKE 178 (569)
T ss_dssp CTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred cCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEEecccc
Confidence 567899999999999998543222222366667776 4444444333
No 74
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.41 E-value=1.2e-12 Score=128.41 Aligned_cols=119 Identities=16% Similarity=0.125 Sum_probs=91.5
Q ss_pred HHHHHHhhc---CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 684 EYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 684 e~Ild~L~~---~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
+.+.+.+.. .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++.. .+..+++
T Consensus 31 ~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~------------~~~~~v~ 96 (189)
T 3p9n_A 31 ESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEA------------LGLSGAT 96 (189)
T ss_dssp HHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHH------------HTCSCEE
T ss_pred HHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHH------------cCCCceE
Confidence 334444433 5778999999999999998887762 6899999999999999988753 1335899
Q ss_pred EEEcCccccC--CCCCCccEEEEccccccCChhHHHHHHHHHHH--ccCCC-EEEEEecCCc
Q 002345 761 LFDGSITVFD--SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLS--SFRPR-ILIVSTPNYE 817 (933)
Q Consensus 761 fi~GDaedLp--~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~r--lLKPG-~LIITTPN~e 817 (933)
++++|+.++. .....||+|++...++|..++....+ +.+.+ +|+|| .+++.++...
T Consensus 97 ~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l-~~~~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 97 LRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAIL-AALGTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp EEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHH-HHHHHSSSCCTTCEEEEEEETTS
T ss_pred EEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHH-HHHHhcCccCCCeEEEEEecCCC
Confidence 9999998764 23578999999988887643444444 45888 99999 8888887643
No 75
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.41 E-value=8.7e-13 Score=130.80 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=93.8
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
....+++.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|++++.. .+..++++
T Consensus 65 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~------------~~~~~v~~ 129 (210)
T 3lbf_A 65 MVARMTELLELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKN------------LDLHNVST 129 (210)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHH------------TTCCSEEE
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHH------------cCCCceEE
Confidence 34455667776788999999999999999999886 7999999999999999988752 23457999
Q ss_pred EEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.++|+.+.....+.||+|++..+++|++ + .+.++|+|| .+++++++
T Consensus 130 ~~~d~~~~~~~~~~~D~i~~~~~~~~~~-~-------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 130 RHGDGWQGWQARAPFDAIIVTAAPPEIP-T-------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EESCGGGCCGGGCCEEEEEESSBCSSCC-T-------HHHHTEEEEEEEEEEECS
T ss_pred EECCcccCCccCCCccEEEEccchhhhh-H-------HHHHhcccCcEEEEEEcC
Confidence 9999988666678999999999999998 3 378899999 88888887
No 76
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.41 E-value=2.5e-12 Score=130.78 Aligned_cols=120 Identities=12% Similarity=-0.003 Sum_probs=84.4
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcc----------cccCCCCCC-------
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK----------LDAAVPCTD------- 755 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~----------~~~~~Pr~~------- 755 (933)
.++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|++++....... ..... ...
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 131 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN-RMKGPEKEEK 131 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTT-CSCHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhccccc-ccchHHHHHH
Confidence 4567999999999999999888762 489999999999999988764210000 00000 000
Q ss_pred -CccE-EEEEcCccccCC-CC---CCccEEEEccccccCChh--HHHHHHHHHHHccCCC-EEEEEecC
Q 002345 756 -VKSA-VLFDGSITVFDS-RL---HGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 756 -~~nV-efi~GDaedLp~-~~---~sFDlVVc~eVLEHLpdD--~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
..++ .+.++|+.+.+. .. ++||+|++..+++|+.+. ....+.+++.++|+|| .+++.++.
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 200 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL 200 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence 0127 999999988654 44 789999999999965432 3344455699999999 77777643
No 77
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.40 E-value=7.5e-13 Score=137.57 Aligned_cols=121 Identities=13% Similarity=-0.005 Sum_probs=82.3
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccc--------cCCCC-C--------
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLD--------AAVPC-T-------- 754 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~--------~~~Pr-~-------- 754 (933)
..++.+|||||||+|.+...++..+ +.+|+|+|+|+.|++.|++++......... ..+.. .
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 3466899999999998887777665 357999999999999999876431100000 00000 0
Q ss_pred CCccEE-EEEcCcccc-CC---CCCCccEEEEccccccCCh--hHHHHHHHHHHHccCCC-EEEEEec
Q 002345 755 DVKSAV-LFDGSITVF-DS---RLHGFDIGTCLEVIEHMEE--DEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 755 ~~~nVe-fi~GDaedL-p~---~~~sFDlVVc~eVLEHLpd--D~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
...++. ++++|+.+. ++ ...+||+|+++.++||+.+ +....+.++++++|||| .++++++
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 011354 899999874 32 2568999999999999742 23334445699999999 7777764
No 78
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.40 E-value=9.2e-13 Score=135.78 Aligned_cols=101 Identities=20% Similarity=0.213 Sum_probs=85.7
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|+++.. . .+.++|+.++++..
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~----------------~--~~~~~d~~~~~~~~ 112 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGV----------------K--NVVEAKAEDLPFPS 112 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTC----------------S--CEEECCTTSCCSCT
T ss_pred CCCeEEEeCCCcCHHHHHHHHcC---CeEEEEeCCHHHHHHHHhhcC----------------C--CEEECcHHHCCCCC
Confidence 67899999999999999999986 689999999999999987531 1 28899999988878
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+.||+|++..+++|+.++....+ +++.++|+|| .+++.+||.
T Consensus 113 ~~fD~v~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 113 GAFEAVLALGDVLSYVENKDKAF-SEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp TCEEEEEECSSHHHHCSCHHHHH-HHHHHHEEEEEEEEEEEEBH
T ss_pred CCEEEEEEcchhhhccccHHHHH-HHHHHHcCCCeEEEEEeCCh
Confidence 89999999998888854654555 5699999999 888899885
No 79
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.40 E-value=4e-13 Score=144.14 Aligned_cols=116 Identities=12% Similarity=0.040 Sum_probs=83.0
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc------c
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI------T 767 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDa------e 767 (933)
.+.+|||||||+|..+..+++.+. .+|+|+|+|+.||+.|+++........ +....+++|.++|+ .
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~~~~~~------~~~~~~~~f~~~d~~~d~~~~ 119 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNKLNSGI------KTKYYKFDYIQETIRSDTFVS 119 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHCC----------CCCEEEEEECCTTSSSHHH
T ss_pred CCCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHhccccc------cccccccchhhhhcccchhhh
Confidence 468999999999987665555542 689999999999999998764211000 00111477888887 3
Q ss_pred cc--CCCCCCccEEEEccccccCC-hhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 768 VF--DSRLHGFDIGTCLEVIEHME-EDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 768 dL--p~~~~sFDlVVc~eVLEHLp-dD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
++ ++..++||+|+|..++||+- .+....+.++++++|||| .+++++||..
T Consensus 120 ~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~ 173 (302)
T 2vdw_A 120 SVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGD 173 (302)
T ss_dssp HHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred hhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence 22 23457899999999999862 122345556799999999 8999999854
No 80
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.40 E-value=5.8e-13 Score=146.32 Aligned_cols=119 Identities=19% Similarity=0.194 Sum_probs=91.1
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-- 769 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL-- 769 (933)
..++.+|||||||+|.++..|++..++..+|+|+|+|+.|++.|++++....... . .....++++++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--~--g~~~~~~v~~~~~d~~~l~~ 156 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKF--F--GSPSRSNVRFLKGFIENLAT 156 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHH--H--SSTTCCCEEEEESCTTCGGG
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhc--c--cccCCCceEEEEccHHHhhh
Confidence 3467899999999999999998753223699999999999999988764321000 0 001235899999999987
Q ss_pred ----CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 770 ----DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 770 ----p~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
++..++||+|++..+++|++ +....+ +++.++|||| .+++.++..
T Consensus 157 ~~~~~~~~~~fD~V~~~~~l~~~~-d~~~~l-~~~~r~LkpgG~l~i~~~~~ 206 (383)
T 4fsd_A 157 AEPEGVPDSSVDIVISNCVCNLST-NKLALF-KEIHRVLRDGGELYFSDVYA 206 (383)
T ss_dssp CBSCCCCTTCEEEEEEESCGGGCS-CHHHHH-HHHHHHEEEEEEEEEEEEEE
T ss_pred cccCCCCCCCEEEEEEccchhcCC-CHHHHH-HHHHHHcCCCCEEEEEEecc
Confidence 77788999999999999998 554555 4699999999 777776653
No 81
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.39 E-value=1.5e-12 Score=126.66 Aligned_cols=105 Identities=11% Similarity=0.146 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-C
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-S 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp-~ 771 (933)
.++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.|++++.. .+..+++++++++.+++ .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~~---~~v~~vD~s~~~l~~a~~~~~~------------~~~~~v~~~~~~~~~l~~~ 85 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGLS---KKVYAFDVQEQALGKTSQRLSD------------LGIENTELILDGHENLDHY 85 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHH------------HTCCCEEEEESCGGGGGGT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHH------------cCCCcEEEEeCcHHHHHhh
Confidence 367899999999999999999985 7999999999999999988753 13368999998887753 3
Q ss_pred CCCCccEEEEc-ccccc-------CChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 772 RLHGFDIGTCL-EVIEH-------MEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 772 ~~~sFDlVVc~-eVLEH-------LpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
....||+|++. ..+++ .+.+....+ +.+.++|||| .+++..
T Consensus 86 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~i~~ 135 (185)
T 3mti_A 86 VREPIRAAIFNLGYLPSADKSVITKPHTTLEAI-EKILDRLEVGGRLAIMI 135 (185)
T ss_dssp CCSCEEEEEEEEC-----------CHHHHHHHH-HHHHHHEEEEEEEEEEE
T ss_pred ccCCcCEEEEeCCCCCCcchhcccChhhHHHHH-HHHHHhcCCCcEEEEEE
Confidence 46789999987 34443 332333444 5699999999 555554
No 82
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.38 E-value=2.5e-12 Score=136.26 Aligned_cols=116 Identities=23% Similarity=0.270 Sum_probs=88.9
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC---
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--- 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp--- 770 (933)
++.+|||||||+|.++..+++.+ ..+|+|+|+|+.|++.|+++........ ......+++++++|+.+++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~ 106 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGR--INKLVCTDIADVSVKQCQQRYEDMKNRR-----DSEYIFSAEFITADSSKELLID 106 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHHSSS-----CC-CCCEEEEEECCTTTSCSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhhhcc-----cccccceEEEEEecccccchhh
Confidence 67899999999999999998764 2799999999999999998765321000 0012347999999999875
Q ss_pred -CC--CCCccEEEEccccccC-C-hhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 771 -SR--LHGFDIGTCLEVIEHM-E-EDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 771 -~~--~~sFDlVVc~eVLEHL-p-dD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+. .++||+|+|..++||+ . .+....+.+++.++|+|| .+++++|+.
T Consensus 107 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 107 KFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred hcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 42 4589999999999998 3 233345556799999999 889999985
No 83
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.37 E-value=4.5e-12 Score=134.54 Aligned_cols=120 Identities=15% Similarity=0.103 Sum_probs=94.3
Q ss_pred HHHHHHHhhc--CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 683 VEYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 683 ve~Ild~L~~--~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
...+++.+.. .+..+|||||||+|.++..+++.. +..+++|+|++ .+++.|++++... ....+++
T Consensus 152 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~-----------~~~~~v~ 218 (335)
T 2r3s_A 152 AQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQ-----------GVASRYH 218 (335)
T ss_dssp HHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHH-----------TCGGGEE
T ss_pred HHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhc-----------CCCcceE
Confidence 3445555554 567899999999999999998864 23689999999 9999999876531 1224699
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 761 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 761 fi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+..+|+.+.+.+. .||+|++..++||++++....+.+++.++|+|| .++|..+..
T Consensus 219 ~~~~d~~~~~~~~-~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 219 TIAGSAFEVDYGN-DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp EEESCTTTSCCCS-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred EEecccccCCCCC-CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence 9999998765543 499999999999998666666667799999999 677777654
No 84
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.37 E-value=2.2e-12 Score=134.96 Aligned_cols=128 Identities=12% Similarity=0.023 Sum_probs=81.7
Q ss_pred HHHHHHHhhc--CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcc---------cccCC
Q 002345 683 VEYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK---------LDAAV 751 (933)
Q Consensus 683 ve~Ild~L~~--~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~---------~~~~~ 751 (933)
...+.+.+.. .++.+|||||||+|.+...++..++ .+|+|+|+|+.|++.|++++....... .....
T Consensus 58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (289)
T 2g72_A 58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG 135 (289)
T ss_dssp HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCC--CeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcC
Confidence 3445555533 3678999999999995544444322 699999999999999988654210000 00000
Q ss_pred CCC---------CCccEEEEEcCccc-cCC-----CCCCccEEEEccccccCChh--HHHHHHHHHHHccCCC-EEEEE
Q 002345 752 PCT---------DVKSAVLFDGSITV-FDS-----RLHGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 752 Pr~---------~~~nVefi~GDaed-Lp~-----~~~sFDlVVc~eVLEHLpdD--~l~aL~eeI~rlLKPG-~LIIT 812 (933)
... ....+.++++|+.+ +++ +.++||+|+|+.+++|+.++ ....+.+++.++|||| .+++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 136 KGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp SCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 000 00126788889987 543 34569999999999996532 3334445699999999 66665
No 85
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.37 E-value=5.3e-12 Score=120.97 Aligned_cols=113 Identities=17% Similarity=0.092 Sum_probs=86.7
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc-cEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK-SAVLF 762 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~-nVefi 762 (933)
..+++.+...++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++.. .+.. ++ ++
T Consensus 15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~------------~~~~~~~-~~ 80 (178)
T 3hm2_A 15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAIN------------LGVSDRI-AV 80 (178)
T ss_dssp HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHT------------TTCTTSE-EE
T ss_pred HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHH------------hCCCCCE-EE
Confidence 455666666678899999999999999999874 237999999999999999988652 2333 78 88
Q ss_pred EcCccc-cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 763 DGSITV-FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 763 ~GDaed-Lp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
++|+.+ ++.....||+|++..+++| . .+.+.+.++|+|| .+++.+++.
T Consensus 81 ~~d~~~~~~~~~~~~D~i~~~~~~~~-~-----~~l~~~~~~L~~gG~l~~~~~~~ 130 (178)
T 3hm2_A 81 QQGAPRAFDDVPDNPDVIFIGGGLTA-P-----GVFAAAWKRLPVGGRLVANAVTV 130 (178)
T ss_dssp ECCTTGGGGGCCSCCSEEEECC-TTC-T-----THHHHHHHTCCTTCEEEEEECSH
T ss_pred ecchHhhhhccCCCCCEEEECCcccH-H-----HHHHHHHHhcCCCCEEEEEeecc
Confidence 898854 3332378999999999998 2 3334699999999 777777653
No 86
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.36 E-value=1.5e-11 Score=132.06 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=92.3
Q ss_pred HHHHHhhcCC-CCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 685 YALQHIKESC-ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 685 ~Ild~L~~~~-g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
.+++.+...+ +.+|||||||+|.++..+++.. +..+++++|+ +.+++.|++++.. .....++++..
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~-----------~~~~~~v~~~~ 235 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHA-----------HDLGGRVEFFE 235 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHH-----------TTCGGGEEEEE
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHh-----------cCCCCceEEEe
Confidence 4455555555 7899999999999999998865 2368999999 8899999887652 12234799999
Q ss_pred cCccccCC-CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 764 GSITVFDS-RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 764 GDaedLp~-~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+|+.+.+. ...+||+|++..++||++++....+.+++.++|+|| .++|..+
T Consensus 236 ~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (352)
T 3mcz_A 236 KNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTM 288 (352)
T ss_dssp CCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99988652 345699999999999999766666777899999999 6766654
No 87
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.35 E-value=7e-12 Score=132.47 Aligned_cols=109 Identities=11% Similarity=0.143 Sum_probs=86.1
Q ss_pred CCCEEEEEcCCc---ChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGS---GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGt---G~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
...+|||||||+ |.++..+.+.. +..+|+|+|+|+.||+.|++++. ...+++++++|+.+.+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~-p~~~v~~vD~sp~~l~~Ar~~~~--------------~~~~v~~~~~D~~~~~ 141 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVN-PDARVVYVDIDPMVLTHGRALLA--------------KDPNTAVFTADVRDPE 141 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHT--------------TCTTEEEEECCTTCHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhC-CCCEEEEEECChHHHHHHHHhcC--------------CCCCeEEEEeeCCCch
Confidence 457999999999 99887766543 22699999999999999988763 1247999999997632
Q ss_pred -----------CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 771 -----------SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 771 -----------~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
+...+||+|++..++||++++....+.+++.++|+|| .++|++...+
T Consensus 142 ~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~ 200 (274)
T 2qe6_A 142 YILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDT 200 (274)
T ss_dssp HHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred hhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence 2235899999999999999654445556799999999 8888887654
No 88
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.34 E-value=6.3e-12 Score=126.40 Aligned_cols=112 Identities=15% Similarity=0.170 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 681 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 681 qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
..++.+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.|++++.. .+ +++
T Consensus 57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~------------~~--~v~ 119 (231)
T 1vbf_A 57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY------------YN--NIK 119 (231)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT------------CS--SEE
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhh------------cC--CeE
Confidence 334556667766678899999999999999999886 6999999999999999887641 12 799
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 761 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 761 fi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
++.+|+.+.....++||+|++..+++|+. + .+.++|+|| .+++.+++..
T Consensus 120 ~~~~d~~~~~~~~~~fD~v~~~~~~~~~~-~-------~~~~~L~pgG~l~~~~~~~~ 169 (231)
T 1vbf_A 120 LILGDGTLGYEEEKPYDRVVVWATAPTLL-C-------KPYEQLKEGGIMILPIGVGR 169 (231)
T ss_dssp EEESCGGGCCGGGCCEEEEEESSBBSSCC-H-------HHHHTEEEEEEEEEEECSSS
T ss_pred EEECCcccccccCCCccEEEECCcHHHHH-H-------HHHHHcCCCcEEEEEEcCCC
Confidence 99999987333457899999999999998 2 378899999 7777877653
No 89
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.34 E-value=2.2e-11 Score=132.73 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=88.7
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 770 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp-- 770 (933)
....+|||||||+|.++..+++.. +..+++|+|+ +.+++.|++++.. .....++++..+|+.+..
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~-----------~~~~~~v~~~~~d~~~~~~~ 244 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAG-----------LSGSERIHGHGANLLDRDVP 244 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTT-----------CTTGGGEEEEECCCCSSSCC
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHh-----------cCcccceEEEEccccccCCC
Confidence 467899999999999999998865 2368999999 9999999887642 112357999999998753
Q ss_pred CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 771 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.+ ++||+|++..++||++++....+.+++.++|+|| .++|..+.
T Consensus 245 ~p-~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (363)
T 3dp7_A 245 FP-TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL 289 (363)
T ss_dssp CC-CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred CC-CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence 43 6899999999999999776666667799999999 77776653
No 90
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.33 E-value=9.2e-12 Score=123.38 Aligned_cols=114 Identities=11% Similarity=0.035 Sum_probs=90.0
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
..+++.+...++.+|||+|||+|.++..+++.+ +..+|+|+|+|+.+++.|++++.. .+..++++++
T Consensus 30 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~v~~~~ 96 (204)
T 3e05_A 30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKK------------FVARNVTLVE 96 (204)
T ss_dssp HHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHH------------HTCTTEEEEE
T ss_pred HHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH------------hCCCcEEEEe
Confidence 445667777788999999999999999999876 347999999999999999987652 1335799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+|+.+.......||+|++..+++ +.. .+.+.+.++|+|| .+++.++.
T Consensus 97 ~d~~~~~~~~~~~D~i~~~~~~~----~~~-~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 97 AFAPEGLDDLPDPDRVFIGGSGG----MLE-EIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp CCTTTTCTTSCCCSEEEESCCTT----CHH-HHHHHHHHHCCTTCEEEEEECB
T ss_pred CChhhhhhcCCCCCEEEECCCCc----CHH-HHHHHHHHhcCCCeEEEEEecc
Confidence 99976554457899999998876 222 3445699999999 77776554
No 91
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.33 E-value=3.7e-12 Score=129.48 Aligned_cols=106 Identities=11% Similarity=0.108 Sum_probs=81.7
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--C
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--D 770 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL--p 770 (933)
.++.+|||||||+|.++..|++.+. .+|+|+|+|+.|++.|+++... ...+++++++|+.++ +
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~-------------~~~~v~~~~~d~~~~~~~ 123 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPR-------------QTHKVIPLKGLWEDVAPT 123 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGG-------------CSSEEEEEESCHHHHGGG
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHh-------------cCCCeEEEecCHHHhhcc
Confidence 4678999999999999999988652 5899999999999999887541 125799999999988 7
Q ss_pred CCCCCccEEEE-cccc--ccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 771 SRLHGFDIGTC-LEVI--EHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 771 ~~~~sFDlVVc-~eVL--EHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
+.+++||+|++ ...+ ++........+.+++.++|||| .+++..
T Consensus 124 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 124 LPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp SCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 77889999999 5543 2222233345556699999999 555443
No 92
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.33 E-value=9.9e-12 Score=124.15 Aligned_cols=115 Identities=10% Similarity=0.120 Sum_probs=81.9
Q ss_pred HHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002345 688 QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 767 (933)
Q Consensus 688 d~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDae 767 (933)
+.+...++.+|||||||+|.++..|++.. +..+|+|+|+|+.|++.+.++...... ..+.++++++++|+.
T Consensus 21 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~--------~~~~~~v~~~~~d~~ 91 (218)
T 3mq2_A 21 EQLRSQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPA--------KGGLPNLLYLWATAE 91 (218)
T ss_dssp HHHHTTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGG--------GTCCTTEEEEECCST
T ss_pred HHhhccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhh--------hcCCCceEEEecchh
Confidence 44445678899999999999999999874 237999999999999965444322111 124558999999999
Q ss_pred ccCCCCCCccEEEEcc---cc--ccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 768 VFDSRLHGFDIGTCLE---VI--EHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 768 dLp~~~~sFDlVVc~e---VL--EHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
++++.... |.|.... .+ +|++ ++...+ +++.++|||| .++++..
T Consensus 92 ~l~~~~~~-d~v~~~~~~~~~~~~~~~-~~~~~l-~~~~~~LkpgG~l~~~~~ 141 (218)
T 3mq2_A 92 RLPPLSGV-GELHVLMPWGSLLRGVLG-SSPEML-RGMAAVCRPGASFLVALN 141 (218)
T ss_dssp TCCSCCCE-EEEEEESCCHHHHHHHHT-SSSHHH-HHHHHTEEEEEEEEEEEE
T ss_pred hCCCCCCC-CEEEEEccchhhhhhhhc-cHHHHH-HHHHHHcCCCcEEEEEec
Confidence 98876655 7766332 23 3665 333444 4699999999 6666543
No 93
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.32 E-value=6.5e-12 Score=124.95 Aligned_cols=114 Identities=11% Similarity=0.127 Sum_probs=90.7
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
...+++.+...++.+|||||||+|.++..+++.+++..+|+|+|+++.+++.|++++.. .+..++++.
T Consensus 66 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~------------~~~~~v~~~ 133 (215)
T 2yxe_A 66 VGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK------------LGYDNVIVI 133 (215)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH------------HTCTTEEEE
T ss_pred HHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCeEEE
Confidence 34556666666788999999999999999988653336899999999999999987652 133469999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 763 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 763 ~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
.+|+.........||+|++..+++|++ +.+.++|+|| .+++.+++.
T Consensus 134 ~~d~~~~~~~~~~fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 134 VGDGTLGYEPLAPYDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp ESCGGGCCGGGCCEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEESSS
T ss_pred ECCcccCCCCCCCeeEEEECCchHHHH--------HHHHHHcCCCcEEEEEECCC
Confidence 999865433356899999999999998 2478899999 778887764
No 94
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.32 E-value=1.6e-11 Score=123.67 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=87.6
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc-cEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK-SAVLF 762 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~-nVefi 762 (933)
..+++.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++.. .+.. +++++
T Consensus 45 ~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~------------~g~~~~v~~~ 109 (204)
T 3njr_A 45 ALTLAALAPRRGELLWDIGGGSGSVSVEWCLAG---GRAITIEPRADRIENIQKNIDT------------YGLSPRMRAV 109 (204)
T ss_dssp HHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH------------TTCTTTEEEE
T ss_pred HHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHH------------cCCCCCEEEE
Confidence 345566666778999999999999999999885 7999999999999999987652 2344 79999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 763 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 763 ~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
++|+.+.......||+|++...+ +.. +.+.+.++|+|| .+++.+++
T Consensus 110 ~~d~~~~~~~~~~~D~v~~~~~~-----~~~--~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 110 QGTAPAALADLPLPEAVFIGGGG-----SQA--LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp ESCTTGGGTTSCCCSEEEECSCC-----CHH--HHHHHHHHSCTTCEEEEEECS
T ss_pred eCchhhhcccCCCCCEEEECCcc-----cHH--HHHHHHHhcCCCcEEEEEecC
Confidence 99998844344689999987754 222 445699999999 88887765
No 95
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.31 E-value=2.1e-12 Score=132.45 Aligned_cols=119 Identities=16% Similarity=0.201 Sum_probs=93.1
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002345 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~ 756 (933)
|.+..-+..+...+. +..+|||+|||+|.++..++...+ ..+|+|+|+|+.|++.+++++.. .+.
T Consensus 34 p~ld~fY~~~~~~l~--~~~~VLDlGCG~GplAl~l~~~~p-~a~~~A~Di~~~~leiar~~~~~------------~g~ 98 (200)
T 3fzg_A 34 ATLNDFYTYVFGNIK--HVSSILDFGCGFNPLALYQWNENE-KIIYHAYDIDRAEIAFLSSIIGK------------LKT 98 (200)
T ss_dssp GGHHHHHHHHHHHSC--CCSEEEEETCTTHHHHHHHHCSSC-CCEEEEECSCHHHHHHHHHHHHH------------SCC
T ss_pred HhHHHHHHHHHhhcC--CCCeEEEecCCCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHh------------cCC
Confidence 444455666666664 578999999999999999987753 36999999999999999998752 233
Q ss_pred c-cEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002345 757 K-SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 815 (933)
Q Consensus 757 ~-nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN 815 (933)
. ++++ +|.... ...+.||+|+...+|||+ ++....+.+ +++.|+||+++|+-|-
T Consensus 99 ~~~v~~--~d~~~~-~~~~~~DvVLa~k~LHlL-~~~~~al~~-v~~~L~pggvfISfpt 153 (200)
T 3fzg_A 99 TIKYRF--LNKESD-VYKGTYDVVFLLKMLPVL-KQQDVNILD-FLQLFHTQNFVISFPI 153 (200)
T ss_dssp SSEEEE--ECCHHH-HTTSEEEEEEEETCHHHH-HHTTCCHHH-HHHTCEEEEEEEEEEC
T ss_pred CccEEE--eccccc-CCCCCcChhhHhhHHHhh-hhhHHHHHH-HHHHhCCCCEEEEeCh
Confidence 3 5666 565544 345789999999999999 566666664 9999999999999994
No 96
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.31 E-value=1.5e-11 Score=133.03 Aligned_cols=115 Identities=14% Similarity=0.115 Sum_probs=89.9
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+++.+...++.+|||||||+|.++..+++.. +..+++|+|+ +.+++.|++++... ....++++..+
T Consensus 173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~-----------~~~~~v~~~~~ 239 (374)
T 1qzz_A 173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADA-----------GLADRVTVAEG 239 (374)
T ss_dssp HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHT-----------TCTTTEEEEEC
T ss_pred HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhc-----------CCCCceEEEeC
Confidence 34555555567899999999999999998875 2368999999 99999999876521 12237999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 765 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
|+.+ +.+ ..||+|++..++||++++....+.+++.++|+|| .++|..+
T Consensus 240 d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 240 DFFK-PLP-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp CTTS-CCS-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCC-cCC-CCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 9976 222 2499999999999999665556666799999999 6777665
No 97
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.30 E-value=7.3e-12 Score=120.27 Aligned_cols=118 Identities=14% Similarity=0.230 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-
Q 002345 678 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV- 756 (933)
Q Consensus 678 Ly~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~- 756 (933)
........+++.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++.. .+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~------------~~~~ 81 (192)
T 1l3i_A 17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQR------------HGLG 81 (192)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHH------------TTCC
T ss_pred ChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHH------------cCCC
Confidence 334444566677777788899999999999999999886 7999999999999999987652 122
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 757 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 757 ~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.++++.++|+.+.......||+|++..+++|+. .+.+.+.++|+|| .+++.+++
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~-----~~l~~~~~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 82 DNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQ-----EILRIIKDKLKPGGRIIVTAIL 136 (192)
T ss_dssp TTEEEEESCHHHHHTTSCCEEEEEESCCTTCHH-----HHHHHHHHTEEEEEEEEEEECB
T ss_pred cceEEEecCHHHhcccCCCCCEEEECCchHHHH-----HHHHHHHHhcCCCcEEEEEecC
Confidence 579999999877222225899999998887753 3445699999999 77777665
No 98
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.30 E-value=1.3e-11 Score=132.08 Aligned_cols=108 Identities=19% Similarity=0.095 Sum_probs=86.9
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 773 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~ 773 (933)
+..+|||||||+|.++..+++.. +..+++++|+ +.+++.|++++.. .....++++..+|+.+ +.+.
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~-----------~~~~~~v~~~~~d~~~-~~p~ 234 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLD-----------TGLSGRAQVVVGSFFD-PLPA 234 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHH-----------TTCTTTEEEEECCTTS-CCCC
T ss_pred CCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhh-----------cCcCcCeEEecCCCCC-CCCC
Confidence 46799999999999999998765 2368999999 9999999887653 1123579999999973 3333
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 774 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+||+|++..++||++++....+.+++.++|+|| .++|..+..
T Consensus 235 -~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 277 (332)
T 3i53_A 235 -GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVA 277 (332)
T ss_dssp -SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred -CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecC
Confidence 899999999999999765666667799999999 777766543
No 99
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.29 E-value=1.9e-11 Score=116.76 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 678 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 678 Ly~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
......+.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++.. .+..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~------------~~~~ 83 (183)
T 2yxd_A 19 TKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAK------------FNIK 83 (183)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTS---SEEEEEECSHHHHHHHHHHHHH------------TTCC
T ss_pred CHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHH------------cCCC
Confidence 334445566777766678899999999999999999843 7999999999999999988652 2335
Q ss_pred cEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 758 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 758 nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+++++++|+.+ +.+...||+|++..+ + +....+ +.+.++ || .+++.+++
T Consensus 84 ~~~~~~~d~~~-~~~~~~~D~i~~~~~-~----~~~~~l-~~~~~~--~gG~l~~~~~~ 133 (183)
T 2yxd_A 84 NCQIIKGRAED-VLDKLEFNKAFIGGT-K----NIEKII-EILDKK--KINHIVANTIV 133 (183)
T ss_dssp SEEEEESCHHH-HGGGCCCSEEEECSC-S----CHHHHH-HHHHHT--TCCEEEEEESC
T ss_pred cEEEEECCccc-cccCCCCcEEEECCc-c----cHHHHH-HHHhhC--CCCEEEEEecc
Confidence 79999999987 445578999999988 2 222333 447777 77 88888765
No 100
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.29 E-value=6.9e-11 Score=118.74 Aligned_cols=108 Identities=9% Similarity=0.117 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCC-cChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-C
Q 002345 693 SCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-D 770 (933)
Q Consensus 693 ~~g~rVLDIGCG-tG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL-p 770 (933)
.++.+|||+||| +|.++..+++..+ .+|+|+|+|+.+++.|++++.. .+. +++++++|+..+ +
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~--~~v~~vD~s~~~~~~a~~~~~~------------~~~-~v~~~~~d~~~~~~ 118 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFN--CKVTATEVDEEFFEYARRNIER------------NNS-NVRLVKSNGGIIKG 118 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHH------------TTC-CCEEEECSSCSSTT
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHH------------hCC-CcEEEeCCchhhhh
Confidence 467899999999 9999999998731 7999999999999999988652 233 799999997543 2
Q ss_pred CCCCCccEEEEccccccCChhH-----------------HHHHHHHHHHccCCC-EEEEEecC
Q 002345 771 SRLHGFDIGTCLEVIEHMEEDE-----------------ASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLpdD~-----------------l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
...+.||+|+++-.+++.+... ...+.+.+.++|+|| .+++.+|+
T Consensus 119 ~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (230)
T 3evz_A 119 VVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD 181 (230)
T ss_dssp TCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES
T ss_pred cccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 3457899999987766654211 145556799999999 77777665
No 101
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.28 E-value=9.9e-12 Score=127.78 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=80.1
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--C
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--D 770 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL--p 770 (933)
.++.+|||||||+|..+..+++..+ .+|+|||+|+.|++.|+++... ...++.++.+|+.+. +
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~-------------~~~~~~~~~~~a~~~~~~ 123 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPR-------------QTHKVIPLKGLWEDVAPT 123 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGG-------------CSSEEEEEESCHHHHGGG
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhh-------------CCCceEEEeehHHhhccc
Confidence 4678999999999999999998763 7899999999999999887542 345789999998764 4
Q ss_pred CCCCCccEEEE-----ccccccCChhHHHHHHHHHHHccCCCEEE
Q 002345 771 SRLHGFDIGTC-----LEVIEHMEEDEASQFGNIVLSSFRPRILI 810 (933)
Q Consensus 771 ~~~~sFDlVVc-----~eVLEHLpdD~l~aL~eeI~rlLKPG~LI 810 (933)
+.+++||.|++ ..+++|++ +....+ ++++|+||||+++
T Consensus 124 ~~~~~FD~i~~D~~~~~~~~~~~~-~~~~~~-~e~~rvLkPGG~l 166 (236)
T 3orh_A 124 LPDGHFDGILYDTYPLSEETWHTH-QFNFIK-NHAFRLLKPGGVL 166 (236)
T ss_dssp SCTTCEEEEEECCCCCBGGGTTTH-HHHHHH-HTHHHHEEEEEEE
T ss_pred ccccCCceEEEeeeecccchhhhc-chhhhh-hhhhheeCCCCEE
Confidence 56778999975 56677876 444444 5699999999443
No 102
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.27 E-value=1.2e-10 Score=127.19 Aligned_cols=116 Identities=18% Similarity=0.187 Sum_probs=91.4
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
..+++.+...+..+|||||||+|.++..+++.. +..+++++|+ +.+++.|++++.. .....++++..
T Consensus 192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~-----------~~l~~~v~~~~ 258 (369)
T 3gwz_A 192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTG-----------RGLADRCEILP 258 (369)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHH-----------TTCTTTEEEEE
T ss_pred HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhh-----------cCcCCceEEec
Confidence 345555555567899999999999999998875 2368999999 9999999987652 12235799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+|+.+ +.+. +||+|++..++||++++....+.+++.++|+|| .++|..+
T Consensus 259 ~d~~~-~~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 308 (369)
T 3gwz_A 259 GDFFE-TIPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDN 308 (369)
T ss_dssp CCTTT-CCCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred cCCCC-CCCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99983 3333 899999999999999766656667799999999 7777554
No 103
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.27 E-value=1.6e-11 Score=131.56 Aligned_cols=115 Identities=10% Similarity=0.118 Sum_probs=92.5
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 681 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 681 qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
.....+++.+...++.+|||||||+|.++..+++.++...+|+|+|+|+.+++.|++++.. .+..+++
T Consensus 62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~------------~g~~~v~ 129 (317)
T 1dl5_A 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER------------LGIENVI 129 (317)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH------------TTCCSEE
T ss_pred HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH------------cCCCCeE
Confidence 4455677777777889999999999999999998752124699999999999999988652 2345699
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 761 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 761 fi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+..+|+.+.....+.||+|++..+++|++ +.+.++|||| .+++.+..
T Consensus 130 ~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 130 FVCGDGYYGVPEFSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp EEESCGGGCCGGGCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred EEECChhhccccCCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 99999988655567899999999999998 2478899999 77776543
No 104
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.27 E-value=2.6e-12 Score=125.89 Aligned_cols=125 Identities=15% Similarity=0.109 Sum_probs=73.2
Q ss_pred chHHHHHHHHHHHhhc-CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002345 677 PLSKQRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 755 (933)
Q Consensus 677 PLy~qRve~Ild~L~~-~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~ 755 (933)
+.....++.+++.+.. .++.+|||+|||+|.++..+++.+ +..+++|+|+|+.+++.|++++.. .+
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~------------~~ 78 (215)
T 4dzr_A 12 PDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAER------------FG 78 (215)
T ss_dssp HHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC---------------------------
T ss_pred ccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHH------------hC
Confidence 4445556667777655 577899999999999999999875 236999999999999999877541 22
Q ss_pred CccEEEEEcCccccCCCC-----CCccEEEEc------cccccCChhHH------------------HHHHHHHHHccCC
Q 002345 756 VKSAVLFDGSITVFDSRL-----HGFDIGTCL------EVIEHMEEDEA------------------SQFGNIVLSSFRP 806 (933)
Q Consensus 756 ~~nVefi~GDaedLp~~~-----~sFDlVVc~------eVLEHLpdD~l------------------~aL~eeI~rlLKP 806 (933)
. +++++++|+.+ +... ++||+|++. ..++|++++.. ..+.+.+.++|+|
T Consensus 79 ~-~~~~~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 156 (215)
T 4dzr_A 79 A-VVDWAAADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR 156 (215)
T ss_dssp -----CCHHHHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCS
T ss_pred C-ceEEEEcchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC
Confidence 2 78999999887 3333 789999995 44455543322 4455668899999
Q ss_pred C-E-EEEEecCC
Q 002345 807 R-I-LIVSTPNY 816 (933)
Q Consensus 807 G-~-LIITTPN~ 816 (933)
| . +++.++..
T Consensus 157 gG~l~~~~~~~~ 168 (215)
T 4dzr_A 157 GRAGVFLEVGHN 168 (215)
T ss_dssp SSEEEEEECTTS
T ss_pred CCeEEEEEECCc
Confidence 9 6 66665543
No 105
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.26 E-value=3.7e-11 Score=129.44 Aligned_cols=116 Identities=9% Similarity=0.102 Sum_probs=90.4
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+++.+...++.+|||||||+|.++..+++.+ +..+++++|+ +.+++.|++++... ....++++..+
T Consensus 174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~-----------~~~~~v~~~~~ 240 (360)
T 1tw3_A 174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDE-----------GLSDRVDVVEG 240 (360)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHT-----------TCTTTEEEEEC
T ss_pred HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhc-----------CCCCceEEEeC
Confidence 34555555567899999999999999998875 2368999999 99999999876521 12237999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 765 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
|+.+ +.+ ..||+|++..++||++++....+.+++.++|+|| .++|..+.
T Consensus 241 d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 241 DFFE-PLP-RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp CTTS-CCS-SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCC-CCC-CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 9976 222 3499999999999999666556666799999999 77777655
No 106
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.26 E-value=1.8e-11 Score=118.26 Aligned_cols=118 Identities=14% Similarity=0.030 Sum_probs=86.8
Q ss_pred HHHHHHHhh-cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEE
Q 002345 683 VEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAV 760 (933)
Q Consensus 683 ve~Ild~L~-~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~-~nVe 760 (933)
.+.+.+.+. ..++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++.. .+. .+++
T Consensus 19 ~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~------------~~~~~~~~ 84 (177)
T 2esr_A 19 RGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIM------------TKAENRFT 84 (177)
T ss_dssp HHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHT------------TTCGGGEE
T ss_pred HHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHH------------cCCCCceE
Confidence 344555555 4567899999999999999999885 26999999999999999988752 222 4799
Q ss_pred EEEcCcccc-CCCCCCccEEEEccccccCChhHHHHHHHHHH--HccCCC-EEEEEecCCc
Q 002345 761 LFDGSITVF-DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVL--SSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 761 fi~GDaedL-p~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~--rlLKPG-~LIITTPN~e 817 (933)
++.+|+.+. +.....||+|++...+++- .. ..+.+.+. ++|+|| .+++.++...
T Consensus 85 ~~~~d~~~~~~~~~~~fD~i~~~~~~~~~--~~-~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 85 LLKMEAERAIDCLTGRFDLVFLDPPYAKE--TI-VATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp EECSCHHHHHHHBCSCEEEEEECCSSHHH--HH-HHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred EEECcHHHhHHhhcCCCCEEEECCCCCcc--hH-HHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 999999873 3344679999998765321 22 22233455 899999 7788777654
No 107
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.26 E-value=1.2e-11 Score=123.90 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=84.7
Q ss_pred HHHHhhc-CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC--ccEEEE
Q 002345 686 ALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV--KSAVLF 762 (933)
Q Consensus 686 Ild~L~~-~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~--~nVefi 762 (933)
+.+.+.. .++.+|||+|||+|.++..++..+. .+|+|+|+|+.|++.|++++.. .+. .+++++
T Consensus 44 l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~------------~~~~~~~v~~~ 109 (201)
T 2ift_A 44 LFNWLMPYIHQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQT------------LKCSSEQAEVI 109 (201)
T ss_dssp HHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHH------------TTCCTTTEEEE
T ss_pred HHHHHHHhcCCCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHH------------hCCCccceEEE
Confidence 3444433 2678999999999999998777662 6899999999999999988752 233 589999
Q ss_pred EcCccccCCC--CCC-ccEEEEccccccCChhHHHHHHHHH--HHccCCC-EEEEEecCCc
Q 002345 763 DGSITVFDSR--LHG-FDIGTCLEVIEHMEEDEASQFGNIV--LSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 763 ~GDaedLp~~--~~s-FDlVVc~eVLEHLpdD~l~aL~eeI--~rlLKPG-~LIITTPN~e 817 (933)
++|+.++... ... ||+|++...++ .. +....+ +.+ .++|+|| .+++++....
T Consensus 110 ~~d~~~~~~~~~~~~~fD~I~~~~~~~-~~-~~~~~l-~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 110 NQSSLDFLKQPQNQPHFDVVFLDPPFH-FN-LAEQAI-SLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CSCHHHHTTSCCSSCCEEEEEECCCSS-SC-HHHHHH-HHHHHTTCEEEEEEEEEEEESSS
T ss_pred ECCHHHHHHhhccCCCCCEEEECCCCC-Cc-cHHHHH-HHHHhcCccCCCcEEEEEECCCC
Confidence 9999875432 567 99999988743 33 333344 446 5689999 7777776543
No 108
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.25 E-value=2.9e-11 Score=121.09 Aligned_cols=111 Identities=14% Similarity=0.050 Sum_probs=86.0
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--C
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--S 771 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp--~ 771 (933)
++.+|||||||+|.++..+++.. +..+|+|||+|+.+++.|++++.. .+..++.++++|+.+++ +
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~------------~~~~~v~~~~~d~~~~~~~~ 107 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLE------------VGVPNIKLLWVDGSDLTDYF 107 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH------------HCCSSEEEEECCSSCGGGTS
T ss_pred CCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHH------------cCCCCEEEEeCCHHHHHhhc
Confidence 57799999999999999998875 236899999999999999987652 13458999999999876 5
Q ss_pred CCCCccEEEEccccccCChh------HHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 772 RLHGFDIGTCLEVIEHMEED------EASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD------~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
..+.||+|++.....|.... ....+.+.+.++|+|| .+++.+.+..
T Consensus 108 ~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (214)
T 1yzh_A 108 EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG 160 (214)
T ss_dssp CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH
T ss_pred CCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHH
Confidence 66789999998765443211 0124555699999999 8888876643
No 109
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.25 E-value=2.2e-11 Score=123.20 Aligned_cols=111 Identities=9% Similarity=0.072 Sum_probs=85.0
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--C
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--S 771 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp--~ 771 (933)
.+.+|||||||+|.++..|++.. +..+|+|||+|+.+++.|++++.. .+..++.++++|+.+++ +
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~------------~~~~nv~~~~~d~~~l~~~~ 104 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKD------------SEAQNVKLLNIDADTLTDVF 104 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHH------------SCCSSEEEECCCGGGHHHHC
T ss_pred CCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHH------------cCCCCEEEEeCCHHHHHhhc
Confidence 56799999999999999999864 237899999999999999987652 24468999999998865 5
Q ss_pred CCCCccEEEEccccccCChhH------HHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 772 RLHGFDIGTCLEVIEHMEEDE------ASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~------l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
..+.||.|++.....|..... ...+.+.+.++|+|| .+++.+.+..
T Consensus 105 ~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~ 157 (213)
T 2fca_A 105 EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRG 157 (213)
T ss_dssp CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHH
T ss_pred CcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence 567899998865443332100 134556699999999 8888887644
No 110
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.24 E-value=1.1e-11 Score=126.57 Aligned_cols=114 Identities=11% Similarity=0.138 Sum_probs=87.5
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-C--
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-D-- 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL-p-- 770 (933)
.+.+|||||||+|.++..+++.. +...|+|||+|+.|++.|++++.. .+..++.++++|+.++ +
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~------------~~l~nv~~~~~Da~~~l~~~ 100 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHE------------EGLSNLRVMCHDAVEVLHKM 100 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHH------------TTCSSEEEECSCHHHHHHHH
T ss_pred CCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHH------------hCCCcEEEEECCHHHHHHHH
Confidence 56799999999999999999865 236899999999999999987652 3456899999999874 3
Q ss_pred CCCCCccEEEEccccccCChhHH------HHHHHHHHHccCCC-EEEEEecCCchhH
Q 002345 771 SRLHGFDIGTCLEVIEHMEEDEA------SQFGNIVLSSFRPR-ILIVSTPNYEYNA 820 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLpdD~l------~aL~eeI~rlLKPG-~LIITTPN~efNs 820 (933)
+++++||.|++.....+...... ..+.+.+.++|||| .+++.|.+..|..
T Consensus 101 ~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~ 157 (218)
T 3dxy_A 101 IPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAE 157 (218)
T ss_dssp SCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHH
T ss_pred cCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHH
Confidence 56789999999854443321111 13556799999999 8888887765543
No 111
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.24 E-value=3.1e-11 Score=128.78 Aligned_cols=117 Identities=19% Similarity=0.175 Sum_probs=90.7
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
...+++.+...+ .+|||||||+|.++..+++.. +..+++|+|+ +.+++.|++++.... ...++++.
T Consensus 157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~-----------~~~~v~~~ 222 (334)
T 2ip2_A 157 FHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLL-----------AGERVSLV 222 (334)
T ss_dssp HHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHH-----------HTTSEEEE
T ss_pred HHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcC-----------CCCcEEEe
Confidence 344555554445 899999999999999998764 2368999999 999999988754211 12479999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 763 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 763 ~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.+|+.+ +.+ .+||+|++..++||++++....+.+++.++|+|| .++|..+.
T Consensus 223 ~~d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 274 (334)
T 2ip2_A 223 GGDMLQ-EVP-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT 274 (334)
T ss_dssp ESCTTT-CCC-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred cCCCCC-CCC-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 999987 433 6799999999999998666666677899999999 77776543
No 112
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.24 E-value=1.1e-11 Score=117.64 Aligned_cols=115 Identities=10% Similarity=0.035 Sum_probs=84.6
Q ss_pred HHHHHHHhhc-C-CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 683 VEYALQHIKE-S-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 683 ve~Ild~L~~-~-~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
.+.+.+.+.. . ++.+|||+|||+|.++..+++.+ ..|+|+|+|+.+++.|++++... +. +++
T Consensus 28 ~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~------------~~-~~~ 91 (171)
T 1ws6_A 28 RKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRT------------GL-GAR 91 (171)
T ss_dssp HHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHH------------TC-CCE
T ss_pred HHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHHc------------CC-ceE
Confidence 3445555543 2 67899999999999999999987 45999999999999999876521 22 789
Q ss_pred EEEcCcccc-CC---CCCCccEEEEccccccCChhHHHHHHHHHH--HccCCC-EEEEEecCCc
Q 002345 761 LFDGSITVF-DS---RLHGFDIGTCLEVIEHMEEDEASQFGNIVL--SSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 761 fi~GDaedL-p~---~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~--rlLKPG-~LIITTPN~e 817 (933)
++++|+.+. +. ....||+|++..+++...++.. +.+. ++|+|| .++++++...
T Consensus 92 ~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~----~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 92 VVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALF----GELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp EECSCHHHHHHHHHHTTCCEEEEEECCCTTSCTTHHH----HHHHHHTCEEEEEEEEEEEETTS
T ss_pred EEeccHHHHHHhhhccCCceEEEEECCCCchhHHHHH----HHHHhhcccCCCcEEEEEeCCcc
Confidence 999998773 21 1347999999987652221222 2355 999999 8888887654
No 113
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.24 E-value=2.7e-11 Score=116.95 Aligned_cols=123 Identities=13% Similarity=0.050 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhhc-CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 679 SKQRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 679 y~qRve~Ild~L~~-~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
.....+.+.+.+.. .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++... ....
T Consensus 28 ~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~ 94 (187)
T 2fhp_A 28 TDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAIT-----------KEPE 94 (187)
T ss_dssp CHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHH-----------TCGG
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHh-----------CCCc
Confidence 33444555666643 467899999999999999888865 268999999999999999876531 1124
Q ss_pred cEEEEEcCccccCC----CCCCccEEEEccccccCChhHHHHHHHHH--HHccCCC-EEEEEecCCc
Q 002345 758 SAVLFDGSITVFDS----RLHGFDIGTCLEVIEHMEEDEASQFGNIV--LSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 758 nVefi~GDaedLp~----~~~sFDlVVc~eVLEHLpdD~l~aL~eeI--~rlLKPG-~LIITTPN~e 817 (933)
+++++++|+.+... ....||+|++...+++.... ..+ +.+ .++|+|| .+++.+++..
T Consensus 95 ~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~--~~~-~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 95 KFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIV--SQL-EKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp GEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHH--HHH-HHHHHTTCEEEEEEEEEEEETTC
T ss_pred ceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHH--HHH-HHHHHhcccCCCCEEEEEeCCcc
Confidence 79999999977432 25789999998875533212 222 235 7889999 7788887754
No 114
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.23 E-value=2.4e-11 Score=120.28 Aligned_cols=102 Identities=20% Similarity=0.141 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++.. .+..++++.++|+.+..
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~v~~~~~d~~~~~-- 122 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLG--AKSVLATDISDESMTAAEENAAL------------NGIYDIALQKTSLLADV-- 122 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHH------------TTCCCCEEEESSTTTTC--
T ss_pred cCCCEEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHH------------cCCCceEEEeccccccC--
Confidence 467899999999999999999875 26999999999999999987652 23334999999997753
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.+.||+|++..+++|+. .+.+++.++|+|| .+++.++.
T Consensus 123 ~~~fD~i~~~~~~~~~~-----~~l~~~~~~L~~gG~l~~~~~~ 161 (205)
T 3grz_A 123 DGKFDLIVANILAEILL-----DLIPQLDSHLNEDGQVIFSGID 161 (205)
T ss_dssp CSCEEEEEEESCHHHHH-----HHGGGSGGGEEEEEEEEEEEEE
T ss_pred CCCceEEEECCcHHHHH-----HHHHHHHHhcCCCCEEEEEecC
Confidence 47899999998887752 4445699999999 66665443
No 115
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.23 E-value=3.3e-11 Score=122.57 Aligned_cols=113 Identities=12% Similarity=0.152 Sum_probs=90.1
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
...+++.+...++.+|||||||+|.++..+++.++ .+|+|+|+++.+++.|++++.. .+..++++.
T Consensus 80 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~------------~~~~~v~~~ 145 (235)
T 1jg1_A 80 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLER------------AGVKNVHVI 145 (235)
T ss_dssp HHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHH------------TTCCSEEEE
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHH------------cCCCCcEEE
Confidence 34556666666788999999999999999998763 6899999999999999987652 234569999
Q ss_pred EcCccccCCCC-CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002345 763 DGSITVFDSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 818 (933)
Q Consensus 763 ~GDaedLp~~~-~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ef 818 (933)
.+|+. .+... ..||+|++..+++|++ + .+.++|+|| .+++++++..+
T Consensus 146 ~~d~~-~~~~~~~~fD~Ii~~~~~~~~~-~-------~~~~~L~pgG~lvi~~~~~~~ 194 (235)
T 1jg1_A 146 LGDGS-KGFPPKAPYDVIIVTAGAPKIP-E-------PLIEQLKIGGKLIIPVGSYHL 194 (235)
T ss_dssp ESCGG-GCCGGGCCEEEEEECSBBSSCC-H-------HHHHTEEEEEEEEEEECSSSS
T ss_pred ECCcc-cCCCCCCCccEEEECCcHHHHH-H-------HHHHhcCCCcEEEEEEecCCC
Confidence 99983 33333 3599999999999998 2 478899999 88888887653
No 116
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.23 E-value=4.8e-11 Score=117.13 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=82.3
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 770 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp- 770 (933)
..++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++... ....+++++++|+.+++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~~ 88 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL-----------NLIDRVTLIKDGHQNMDK 88 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHT-----------TCGGGEEEECSCGGGGGG
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCCeEEEECCHHHHhh
Confidence 346789999999999999999886212259999999999999999887531 11258999999998875
Q ss_pred CCCCCccEEEEcccc-c----cC--ChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 771 SRLHGFDIGTCLEVI-E----HM--EEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 771 ~~~~sFDlVVc~eVL-E----HL--pdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
...+.||+|++...+ . ++ ..+....+.+.+.++|+|| .+++.+.
T Consensus 89 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 89 YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 455789999998754 1 01 1112233455699999999 6666543
No 117
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.22 E-value=6.2e-11 Score=123.80 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=92.4
Q ss_pred CchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002345 676 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 755 (933)
Q Consensus 676 PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~ 755 (933)
.|....-++.+++.+. .++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++.. .+
T Consensus 92 r~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~------------~~ 157 (276)
T 2b3t_A 92 RPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQH------------LA 157 (276)
T ss_dssp CTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHH------------HT
T ss_pred CchHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH------------cC
Confidence 3555666666777665 467799999999999999998653 236999999999999999987652 13
Q ss_pred CccEEEEEcCccccCCCCCCccEEEEc-------------cccccCCh----------hHHHHHHHHHHHccCCC-EEEE
Q 002345 756 VKSAVLFDGSITVFDSRLHGFDIGTCL-------------EVIEHMEE----------DEASQFGNIVLSSFRPR-ILIV 811 (933)
Q Consensus 756 ~~nVefi~GDaedLp~~~~sFDlVVc~-------------eVLEHLpd----------D~l~aL~eeI~rlLKPG-~LII 811 (933)
..+++++++|+.+.. ..+.||+|+++ ++++|-|. +....+.+.+.++|+|| .+++
T Consensus 158 ~~~v~~~~~d~~~~~-~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~ 236 (276)
T 2b3t_A 158 IKNIHILQSDWFSAL-AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL 236 (276)
T ss_dssp CCSEEEECCSTTGGG-TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCceEEEEcchhhhc-ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 347999999998743 35689999998 56666552 23345556799999999 6666
Q ss_pred Eec
Q 002345 812 STP 814 (933)
Q Consensus 812 TTP 814 (933)
..+
T Consensus 237 ~~~ 239 (276)
T 2b3t_A 237 EHG 239 (276)
T ss_dssp ECC
T ss_pred EEC
Confidence 543
No 118
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.22 E-value=1e-10 Score=126.50 Aligned_cols=117 Identities=11% Similarity=0.058 Sum_probs=91.9
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
..+++.+...++.+|||||||+|.++..+++.. +..+++|+|+ +.+++.|++++... ....++++..
T Consensus 180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~-----------~~~~~v~~~~ 246 (359)
T 1x19_A 180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEK-----------GVADRMRGIA 246 (359)
T ss_dssp HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHT-----------TCTTTEEEEE
T ss_pred HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhc-----------CCCCCEEEEe
Confidence 345555555577899999999999999999875 2368999999 99999999876521 1223599999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+|+.+.+.+. +|+|++..++||++++....+.+++.++|+|| .++|..+.
T Consensus 247 ~d~~~~~~~~--~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~ 297 (359)
T 1x19_A 247 VDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 297 (359)
T ss_dssp CCTTTSCCCC--CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred CccccCCCCC--CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 9998875543 49999999999999666666667899999999 77666643
No 119
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.21 E-value=4.6e-11 Score=130.19 Aligned_cols=107 Identities=17% Similarity=0.129 Sum_probs=83.0
Q ss_pred hcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 691 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 691 ~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
...++.+|||||||+|.++..+++.+. .+|+|+|+| +|++.|++++... ....+++++++|+.+++
T Consensus 63 ~~~~~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s-~~l~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~ 128 (349)
T 3q7e_A 63 HLFKDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECS-SISDYAVKIVKAN-----------KLDHVVTIIKGKVEEVE 128 (349)
T ss_dssp HHHTTCEEEEESCTTSHHHHHHHHTTC--SEEEEEECS-THHHHHHHHHHHT-----------TCTTTEEEEESCTTTCC
T ss_pred ccCCCCEEEEEeccchHHHHHHHHCCC--CEEEEECcH-HHHHHHHHHHHHc-----------CCCCcEEEEECcHHHcc
Confidence 345788999999999999999999862 699999999 4999999876531 12335999999999998
Q ss_pred CCCCCccEEEEccccccCC-hhHHHHHHHHHHHccCCCEEEE
Q 002345 771 SRLHGFDIGTCLEVIEHME-EDEASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLp-dD~l~aL~eeI~rlLKPG~LII 811 (933)
.+.+.||+|++..+.+++. .+....+.+.+.++||||++++
T Consensus 129 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 170 (349)
T 3q7e_A 129 LPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 170 (349)
T ss_dssp CSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred CCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEc
Confidence 8788999999977655542 1233445556899999995544
No 120
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.21 E-value=4.7e-11 Score=129.91 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=88.7
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+.+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+|+ |++.|++++... +...++++++
T Consensus 40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~-----------~l~~~v~~~~ 105 (348)
T 2y1w_A 40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSN-----------NLTDRIVVIP 105 (348)
T ss_dssp HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHT-----------TCTTTEEEEE
T ss_pred HHHHhccccCCcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHH-HHHHHHHHHHHc-----------CCCCcEEEEE
Confidence 4455666666889999999999999999998863 6999999996 889998876521 1225799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhH-HHHHHHHHHHccCCC-EEEEEe
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDE-ASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~-l~aL~eeI~rlLKPG-~LIITT 813 (933)
+|+.+++.+ .+||+|++..+++|+..+. ...+. .+.++|+|| .+++..
T Consensus 106 ~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~-~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 106 GKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYL-HAKKYLKPSGNMFPTI 155 (348)
T ss_dssp SCTTTCCCS-SCEEEEEECCCBTTBTTTSHHHHHH-HGGGGEEEEEEEESCE
T ss_pred cchhhCCCC-CceeEEEEeCchhcCChHHHHHHHH-HHHhhcCCCeEEEEec
Confidence 999987654 5799999999999987443 34554 589999999 555443
No 121
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.21 E-value=3.3e-11 Score=124.10 Aligned_cols=99 Identities=20% Similarity=0.217 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|+++. .++.+..+|+.++++.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~~~~ 145 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY-----------------PQVTFCVASSHRLPFS 145 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC-----------------TTSEEEECCTTSCSBC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC-----------------CCcEEEEcchhhCCCC
Confidence 467899999999999999999873 1268999999999999997642 3578999999988887
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 818 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ef 818 (933)
+++||+|++..+.++ + +++.++|+|| .+++.+|+...
T Consensus 146 ~~~fD~v~~~~~~~~--------l-~~~~~~L~pgG~l~~~~~~~~~ 183 (269)
T 1p91_A 146 DTSMDAIIRIYAPCK--------A-EELARVVKPGGWVITATPGPRH 183 (269)
T ss_dssp TTCEEEEEEESCCCC--------H-HHHHHHEEEEEEEEEEEECTTT
T ss_pred CCceeEEEEeCChhh--------H-HHHHHhcCCCcEEEEEEcCHHH
Confidence 889999999876432 2 3589999999 88889998654
No 122
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.21 E-value=4.9e-11 Score=123.34 Aligned_cols=120 Identities=15% Similarity=0.121 Sum_probs=85.7
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc-cC--
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-FD-- 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaed-Lp-- 770 (933)
++.+|||||||+|.++..|++.. +...|+|||+|+.|++.|++++.+..... ..+..++.++++|+.+ ++
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~------~~~~~nv~~~~~d~~~~l~~~ 118 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAP------AGGFQNIACLRSNAMKHLPNF 118 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHST------TCCCTTEEEEECCTTTCHHHH
T ss_pred CCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHH------hcCCCeEEEEECcHHHhhhhh
Confidence 56789999999999999999875 23689999999999999988765321100 1245689999999987 55
Q ss_pred CCCCCccEEEEccccccCChhH------HHHHHHHHHHccCCC-EEEEEecCCchhH
Q 002345 771 SRLHGFDIGTCLEVIEHMEEDE------ASQFGNIVLSSFRPR-ILIVSTPNYEYNA 820 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLpdD~------l~aL~eeI~rlLKPG-~LIITTPN~efNs 820 (933)
+..++||.|++...-.|..... ...+.+.+.++|+|| .+++.+.+..+..
T Consensus 119 ~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~ 175 (235)
T 3ckk_A 119 FYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHD 175 (235)
T ss_dssp CCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHH
T ss_pred CCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHH
Confidence 5678999998754433221000 024556799999999 8888888765543
No 123
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.21 E-value=1e-10 Score=127.22 Aligned_cols=112 Identities=18% Similarity=0.148 Sum_probs=86.4
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+.+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+|+ |++.|++++... +...++++++
T Consensus 54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~-----------~~~~~i~~~~ 119 (340)
T 2fyt_A 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLN-----------KLEDTITLIK 119 (340)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHT-----------TCTTTEEEEE
T ss_pred HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHc-----------CCCCcEEEEE
Confidence 4455555566788999999999999999999862 6999999997 999998876531 1225899999
Q ss_pred cCccccCCCCCCccEEEEccc---cccCChhHHHHHHHHHHHccCCCEEEE
Q 002345 764 GSITVFDSRLHGFDIGTCLEV---IEHMEEDEASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eV---LEHLpdD~l~aL~eeI~rlLKPG~LII 811 (933)
+|+.+++++.++||+|++..+ ++|.. +. ..+.+.+.++||||+.++
T Consensus 120 ~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~-~~-~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 120 GKIEEVHLPVEKVDVIISEWMGYFLLFES-ML-DSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp SCTTTSCCSCSCEEEEEECCCBTTBTTTC-HH-HHHHHHHHHHEEEEEEEE
T ss_pred eeHHHhcCCCCcEEEEEEcCchhhccCHH-HH-HHHHHHHHhhcCCCcEEE
Confidence 999998877789999999774 54544 33 344456899999994444
No 124
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.21 E-value=6e-11 Score=126.52 Aligned_cols=119 Identities=13% Similarity=0.073 Sum_probs=81.2
Q ss_pred CCCEEEEEcCCcCh----HHHHHhcC-CC-C-CceEEEEeCChHHHHHHHHHHhhhhh--cc--------cccCCCC-CC
Q 002345 694 CATTLVDFGCGSGS----LLDSLLDY-PT-A-LEKIVGVDISQKSLSRAAKIIHSKLS--KK--------LDAAVPC-TD 755 (933)
Q Consensus 694 ~g~rVLDIGCGtG~----fL~~LAr~-g~-~-f~~VtGVDIS~emLe~ArkrL~a~ls--~~--------~~~~~Pr-~~ 755 (933)
+..+|||+|||+|. ++..|++. +. + ..+|+|+|+|+.||+.|++.+-.... .. .....+. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45699999999998 45555543 20 0 14899999999999999875311000 00 0000000 00
Q ss_pred --------CccEEEEEcCccccCCC-CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 756 --------VKSAVLFDGSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 756 --------~~nVefi~GDaedLp~~-~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
..+|.|.++|+.+.+++ .+.||+|+|..|++|++++....+.+.+.+.|+||++++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 13699999999886554 5689999999999999976666666779999999944443
No 125
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=99.20 E-value=5.5e-11 Score=119.48 Aligned_cols=116 Identities=14% Similarity=0.173 Sum_probs=87.8
Q ss_pred HHHHHh--hcCCCCEEEEEcCCcChHHHHHhcCCC----CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002345 685 YALQHI--KESCATTLVDFGCGSGSLLDSLLDYPT----ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 758 (933)
Q Consensus 685 ~Ild~L--~~~~g~rVLDIGCGtG~fL~~LAr~g~----~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~n 758 (933)
.+++.+ ...++.+|||||||+|.++..+++..+ +..+|+|+|+++.+++.|++++....-. .....+
T Consensus 69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-------~~~~~~ 141 (227)
T 2pbf_A 69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPE-------LLKIDN 141 (227)
T ss_dssp HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGG-------GGSSTT
T ss_pred HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcc-------ccccCC
Confidence 344444 244678999999999999999988652 2359999999999999999886531000 001357
Q ss_pred EEEEEcCccccC----CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 759 AVLFDGSITVFD----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 759 Vefi~GDaedLp----~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+++..+|+.+.. .....||+|++..+++|+. +.+.++|+|| .++++++.
T Consensus 142 v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 142 FKIIHKNIYQVNEEEKKELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp EEEEECCGGGCCHHHHHHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEEE
T ss_pred EEEEECChHhcccccCccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEcc
Confidence 999999998754 4457899999999999986 3478899999 77777764
No 126
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.19 E-value=5e-11 Score=119.41 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=83.9
Q ss_pred HHHHHHhhcC-CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 684 EYALQHIKES-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 684 e~Ild~L~~~-~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
+.+.+.+... ++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++.. .+..+++++
T Consensus 43 ~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~------------~~~~~v~~~ 108 (202)
T 2fpo_A 43 ETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLAT------------LKAGNARVV 108 (202)
T ss_dssp HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHH------------TTCCSEEEE
T ss_pred HHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHH------------cCCCcEEEE
Confidence 3444444432 678999999999999998777762 5899999999999999988752 233589999
Q ss_pred EcCccc-cCCCCCCccEEEEccccccCChhHHHHHHHHHHH--ccCCC-EEEEEecC
Q 002345 763 DGSITV-FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLS--SFRPR-ILIVSTPN 815 (933)
Q Consensus 763 ~GDaed-Lp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~r--lLKPG-~LIITTPN 815 (933)
++|+.+ ++.....||+|++...++ .. .....+ +.+.+ +|+|| .+++++..
T Consensus 109 ~~D~~~~~~~~~~~fD~V~~~~p~~-~~-~~~~~l-~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 109 NSNAMSFLAQKGTPHNIVFVDPPFR-RG-LLEETI-NLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp CSCHHHHHSSCCCCEEEEEECCSSS-TT-THHHHH-HHHHHTTCEEEEEEEEEEEEG
T ss_pred ECCHHHHHhhcCCCCCEEEECCCCC-CC-cHHHHH-HHHHhcCccCCCcEEEEEECC
Confidence 999987 444567899999987743 33 333333 34654 59999 67776654
No 127
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.19 E-value=1.5e-10 Score=128.44 Aligned_cols=114 Identities=20% Similarity=0.264 Sum_probs=89.5
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++.. .+ .+++++++|+.+....
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g---~~V~gvDis~~al~~A~~n~~~------------~~-~~v~~~~~D~~~~~~~ 295 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMG---AEVVGVEDDLASVLSLQKGLEA------------NA-LKAQALHSDVDEALTE 295 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTT---CEEEEEESBHHHHHHHHHHHHH------------TT-CCCEEEECSTTTTSCT
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHH------------cC-CCeEEEEcchhhcccc
Confidence 367899999999999999999986 6999999999999999988752 12 2489999999988766
Q ss_pred CCCccEEEEcccccc---CChhHHHHHHHHHHHccCCC-EEEEEec-CCchhHHH
Q 002345 773 LHGFDIGTCLEVIEH---MEEDEASQFGNIVLSSFRPR-ILIVSTP-NYEYNAIL 822 (933)
Q Consensus 773 ~~sFDlVVc~eVLEH---LpdD~l~aL~eeI~rlLKPG-~LIITTP-N~efNs~f 822 (933)
.+.||+|+++..+|| ...+....+.+.+.++|+|| .++|.+. ...|...+
T Consensus 296 ~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l 350 (381)
T 3dmg_A 296 EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLL 350 (381)
T ss_dssp TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHH
Confidence 689999999999988 33344555666799999999 5555443 33344433
No 128
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.19 E-value=1.4e-10 Score=125.67 Aligned_cols=105 Identities=19% Similarity=0.111 Sum_probs=80.9
Q ss_pred HhhcCCCCEEEEEcCCcChHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002345 689 HIKESCATTLVDFGCGSGSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 767 (933)
Q Consensus 689 ~L~~~~g~rVLDIGCGtG~fL-~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDae 767 (933)
.+...++.+|||||||+|.++ ..+++..+ .+|+|||+|++|++.|++++... +..++++.++|+.
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~g--a~V~gIDis~~~l~~Ar~~~~~~------------gl~~v~~v~gDa~ 182 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRKVIEGL------------GVDGVNVITGDET 182 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTTC--CEEEEEESSHHHHHHHHHHHHHH------------TCCSEEEEESCGG
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHhc------------CCCCeEEEECchh
Confidence 455668899999999999776 44555433 79999999999999999887531 2368999999999
Q ss_pred ccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 768 VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 768 dLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+++ +.+||+|++... ++ +....+. ++.++|||| .+++...
T Consensus 183 ~l~--d~~FDvV~~~a~---~~-d~~~~l~-el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 183 VID--GLEFDVLMVAAL---AE-PKRRVFR-NIHRYVDTETRIIYRTY 223 (298)
T ss_dssp GGG--GCCCSEEEECTT---CS-CHHHHHH-HHHHHCCTTCEEEEEEC
T ss_pred hCC--CCCcCEEEECCC---cc-CHHHHHH-HHHHHcCCCcEEEEEcC
Confidence 875 678999998654 33 5545554 699999999 6666553
No 129
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=99.19 E-value=8.1e-11 Score=118.17 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=87.4
Q ss_pred HHHHhh--cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 686 ALQHIK--ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 686 Ild~L~--~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+++.+. ..++.+|||||||+|.++..|++..++..+|+|+|+++.+++.|++++...... .....++++.+
T Consensus 67 ~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-------~~~~~~v~~~~ 139 (226)
T 1i1n_A 67 ALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT-------LLSSGRVQLVV 139 (226)
T ss_dssp HHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH-------HHHTSSEEEEE
T ss_pred HHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc-------ccCCCcEEEEE
Confidence 344443 446789999999999999999876322358999999999999998876531000 00134799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+|+.........||+|++..+++|+. +.+.++|+|| .++++++..
T Consensus 140 ~d~~~~~~~~~~fD~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 140 GDGRMGYAEEAPYDAIHVGAAAPVVP--------QALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp SCGGGCCGGGCCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEESCT
T ss_pred CCcccCcccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEecC
Confidence 99987655567899999999999987 2478899999 777777653
No 130
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.18 E-value=5.8e-11 Score=120.81 Aligned_cols=121 Identities=13% Similarity=0.166 Sum_probs=94.0
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcC-CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002345 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 755 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~-g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~ 755 (933)
+.+......+++.+...++.+|||+|||+|.++..+++. + +..+|+|+|+++.+++.|++++.... +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~-----------g 146 (258)
T 2pwy_A 79 PTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVG-EKGLVESYEARPHHLAQAERNVRAFW-----------Q 146 (258)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHC-----------C
T ss_pred cccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhc-----------C
Confidence 445555566777777778899999999999999999987 3 23799999999999999998765210 2
Q ss_pred CccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 756 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 756 ~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
..++++.++|+.+.++..+.||+|++ +++ ++...+ +++.++|+|| .+++.+|+.
T Consensus 147 ~~~v~~~~~d~~~~~~~~~~~D~v~~-----~~~-~~~~~l-~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 147 VENVRFHLGKLEEAELEEAAYDGVAL-----DLM-EPWKVL-EKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp CCCEEEEESCGGGCCCCTTCEEEEEE-----ESS-CGGGGH-HHHHHHEEEEEEEEEEESCH
T ss_pred CCCEEEEECchhhcCCCCCCcCEEEE-----CCc-CHHHHH-HHHHHhCCCCCEEEEEeCCH
Confidence 35799999999987666678999998 444 333344 4599999999 888888874
No 131
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.18 E-value=1.4e-10 Score=118.40 Aligned_cols=116 Identities=9% Similarity=0.082 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002345 679 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 758 (933)
Q Consensus 679 y~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~n 758 (933)
......++...+...++.+|||||||+|..+..|++.. +..+|+|+|+++.+++.|++++... ....+
T Consensus 56 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~ 123 (232)
T 3ntv_A 56 DRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATY-----------HFENQ 123 (232)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHT-----------TCTTT
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCc
Confidence 34444555555555578899999999999999999854 2379999999999999999887531 12247
Q ss_pred EEEEEcCccccC--CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002345 759 AVLFDGSITVFD--SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 811 (933)
Q Consensus 759 Vefi~GDaedLp--~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LII 811 (933)
++++++|+.+.. ...+.||+|++....++. ..+.+.+.++|+|| .+++
T Consensus 124 v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~~-----~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 124 VRIIEGNALEQFENVNDKVYDMIFIDAAKAQS-----KKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp EEEEESCGGGCHHHHTTSCEEEEEEETTSSSH-----HHHHHHHGGGEEEEEEEEE
T ss_pred EEEEECCHHHHHHhhccCCccEEEEcCcHHHH-----HHHHHHHHHhcCCCeEEEE
Confidence 999999997742 225789999987543332 23445699999999 5544
No 132
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.18 E-value=9.6e-11 Score=118.92 Aligned_cols=104 Identities=10% Similarity=0.093 Sum_probs=76.0
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-- 769 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL-- 769 (933)
..++.+|||+|||+|.++..|++..+ ..+|+|+|+|+.|++.+.+.... ..++.++.+|+.+.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~--------------~~~v~~~~~d~~~~~~ 119 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRE--------------RNNIIPLLFDASKPWK 119 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHH--------------CSSEEEECSCTTCGGG
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhc--------------CCCeEEEEcCCCCchh
Confidence 34678999999999999999887642 36899999999988776554331 13688999998774
Q ss_pred -CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 770 -DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 770 -p~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
....+.||+|++. +.+| ++...+.+++.++|||| .+++..+
T Consensus 120 ~~~~~~~fD~V~~~-~~~~---~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 120 YSGIVEKVDLIYQD-IAQK---NQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp TTTTCCCEEEEEEC-CCST---THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccccceeEEEEe-ccCh---hHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 1223789999997 3222 33444455699999999 6666654
No 133
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.18 E-value=4.6e-11 Score=124.89 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcC-CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC-CC
Q 002345 679 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT-DV 756 (933)
Q Consensus 679 y~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~-g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~-~~ 756 (933)
+....+.+++.+...++.+|||+|||+|.++..+++. + +..+|+|+|+++.+++.|++++. .. +.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~-~~~~v~~vD~s~~~~~~a~~~~~------------~~~g~ 161 (275)
T 1yb2_A 95 SEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALN-GKGTLTVVERDEDNLKKAMDNLS------------EFYDI 161 (275)
T ss_dssp -----------CCCCTTCEEEEECCTTSHHHHHHHHHHT-TSSEEEEECSCHHHHHHHHHHHH------------TTSCC
T ss_pred ChhhHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHH------------hcCCC
Confidence 3333445666666677889999999999999999886 2 22799999999999999998765 22 34
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 757 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 757 ~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
.++++.++|+.+ +...+.||+|++ |++ ++...+ +.+.++|+|| .+++.+|+.
T Consensus 162 ~~v~~~~~d~~~-~~~~~~fD~Vi~-----~~~-~~~~~l-~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 162 GNVRTSRSDIAD-FISDQMYDAVIA-----DIP-DPWNHV-QKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp TTEEEECSCTTT-CCCSCCEEEEEE-----CCS-CGGGSH-HHHHHTEEEEEEEEEEESSH
T ss_pred CcEEEEECchhc-cCcCCCccEEEE-----cCc-CHHHHH-HHHHHHcCCCCEEEEEeCCH
Confidence 579999999987 445578999998 565 333344 4699999999 888888864
No 134
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.18 E-value=9.5e-11 Score=129.04 Aligned_cols=113 Identities=14% Similarity=0.093 Sum_probs=86.1
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+++...+...++.+|||||||+|.++..+++.+. .+|+|||+| .|++.|++++... ....++++++
T Consensus 53 ~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~-----------~~~~~v~~~~ 118 (376)
T 3r0q_C 53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKAN-----------NLDHIVEVIE 118 (376)
T ss_dssp HHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHT-----------TCTTTEEEEE
T ss_pred HHHHhccccCCCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHc-----------CCCCeEEEEE
Confidence 3444444556788999999999999999999873 599999999 9999998877531 2234699999
Q ss_pred cCccccCCCCCCccEEEEccccccCCh-hHHHHHHHHHHHccCCCEEEE
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpd-D~l~aL~eeI~rlLKPG~LII 811 (933)
+|+.+++.+ +.||+|++..+.+++.. .....+.+.+.++|+||++++
T Consensus 119 ~d~~~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li 166 (376)
T 3r0q_C 119 GSVEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMY 166 (376)
T ss_dssp SCGGGCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEE
T ss_pred CchhhcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEE
Confidence 999998766 78999999766666542 223445556899999994443
No 135
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.17 E-value=9.4e-11 Score=118.18 Aligned_cols=117 Identities=8% Similarity=0.094 Sum_probs=85.3
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
...++...+...++.+|||||||+|..+..+++..++..+|+|+|+++.+++.|++++... ....++++
T Consensus 46 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~v~~ 114 (221)
T 3u81_A 46 KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA-----------GLQDKVTI 114 (221)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-----------TCGGGEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHc-----------CCCCceEE
Confidence 3344444445557889999999999999999985322379999999999999999887531 12246999
Q ss_pred EEcCcccc-CCCC-----CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 762 FDGSITVF-DSRL-----HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 762 i~GDaedL-p~~~-----~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
+++|+.+. +... +.||+|++....+|.. +....+. .+ ++|+|| .+++.
T Consensus 115 ~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~-~~~~~~~-~~-~~LkpgG~lv~~ 169 (221)
T 3u81_A 115 LNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYL-PDTLLLE-KC-GLLRKGTVLLAD 169 (221)
T ss_dssp EESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHH-HHHHHHH-HT-TCCCTTCEEEES
T ss_pred EECCHHHHHHHHHHhcCCCceEEEEEcCCcccch-HHHHHHH-hc-cccCCCeEEEEe
Confidence 99998653 2222 6899999998888875 4444443 35 999999 55553
No 136
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.16 E-value=7.1e-11 Score=120.70 Aligned_cols=120 Identities=14% Similarity=0.093 Sum_probs=93.3
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcC-CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002345 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 755 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~-g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~ 755 (933)
+++......++..+...++.+|||+|||+|.++..+++. + +..+|+|+|+++.+++.|++++... +
T Consensus 76 ~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~------------~ 142 (255)
T 3mb5_A 76 IVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVG-PEGRVVSYEIREDFAKLAWENIKWA------------G 142 (255)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHH------------T
T ss_pred cccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhC-CCeEEEEEecCHHHHHHHHHHHHHc------------C
Confidence 355556667778887778899999999999999999987 3 2379999999999999999887531 2
Q ss_pred Cc-cEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 756 VK-SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 756 ~~-nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
.. ++++.++|+.+. +...+||+|++ +++ ++...+ +++.++|+|| .+++.+|+.+
T Consensus 143 ~~~~v~~~~~d~~~~-~~~~~~D~v~~-----~~~-~~~~~l-~~~~~~L~~gG~l~~~~~~~~ 198 (255)
T 3mb5_A 143 FDDRVTIKLKDIYEG-IEEENVDHVIL-----DLP-QPERVV-EHAAKALKPGGFFVAYTPCSN 198 (255)
T ss_dssp CTTTEEEECSCGGGC-CCCCSEEEEEE-----CSS-CGGGGH-HHHHHHEEEEEEEEEEESSHH
T ss_pred CCCceEEEECchhhc-cCCCCcCEEEE-----CCC-CHHHHH-HHHHHHcCCCCEEEEEECCHH
Confidence 23 499999999865 45678999998 444 333344 4599999999 7777777643
No 137
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.16 E-value=2.4e-10 Score=121.43 Aligned_cols=162 Identities=16% Similarity=0.189 Sum_probs=107.6
Q ss_pred hhHHhhhhccccCCccccccCCchhhHhhhccccccccccccchhhhhhcccCCchHHHHHHHHHHHhhcCCCCEEEEEc
Q 002345 623 QVEVVTAQMSVGQSACFCKELPPQELILAAADDSARTFSLLSSKDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFG 702 (933)
Q Consensus 623 hLkvlVtq~reGqsiff~r~lP~~dlilAAa~Ds~~dl~~Ls~eer~e~~~F~PPLy~qRve~Ild~L~~~~g~rVLDIG 702 (933)
+++.++.++..|.+.+|.. +........+. .-....+..|....-++.+++.+...++.+|||+|
T Consensus 67 ~~~~~~~~r~~~~p~~yi~---------g~~~f~~~~~~------v~~~~lipr~~te~lv~~~l~~~~~~~~~~vLDlG 131 (284)
T 1nv8_A 67 RILELVEKRASGYPLHYIL---------GEKEFMGLSFL------VEEGVFVPRPETEELVELALELIRKYGIKTVADIG 131 (284)
T ss_dssp HHHHHHHHHHTTCCHHHHH---------TEEEETTEEEE------CCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred HHHHHHHHHHCCCCCeEEe---------eeeEECCeEEE------eCCCceecChhHHHHHHHHHHHhcccCCCEEEEEe
Confidence 4667777777777766652 11111111110 01122234455666667777776544667999999
Q ss_pred CCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc-cEEEEEcCccccCCCCCCc---cE
Q 002345 703 CGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK-SAVLFDGSITVFDSRLHGF---DI 778 (933)
Q Consensus 703 CGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~-nVefi~GDaedLp~~~~sF---Dl 778 (933)
||+|.++..+++.+ ..+|+|+|+|+.+++.|++++.. .+.. +++++++|+.+... +.| |+
T Consensus 132 ~GsG~~~~~la~~~--~~~v~~vDis~~al~~A~~n~~~------------~~l~~~v~~~~~D~~~~~~--~~f~~~D~ 195 (284)
T 1nv8_A 132 TGSGAIGVSVAKFS--DAIVFATDVSSKAVEIARKNAER------------HGVSDRFFVRKGEFLEPFK--EKFASIEM 195 (284)
T ss_dssp CTTSHHHHHHHHHS--SCEEEEEESCHHHHHHHHHHHHH------------TTCTTSEEEEESSTTGGGG--GGTTTCCE
T ss_pred CchhHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHH------------cCCCCceEEEECcchhhcc--cccCCCCE
Confidence 99999999998872 37999999999999999988752 2233 59999999987422 478 99
Q ss_pred EEEc------------cccccCChh-------HHHHHHHHHH-HccCCC-EEEEEecCCc
Q 002345 779 GTCL------------EVIEHMEED-------EASQFGNIVL-SSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 779 VVc~------------eVLEHLpdD-------~l~aL~eeI~-rlLKPG-~LIITTPN~e 817 (933)
|+++ ++. |-+.. .+..+ +.+. +.|+|| .+++.++...
T Consensus 196 IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~-~~i~~~~l~pgG~l~~e~~~~q 253 (284)
T 1nv8_A 196 ILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFY-REFFGRYDTSGKIVLMEIGEDQ 253 (284)
T ss_dssp EEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHH-HHHHHHCCCTTCEEEEECCTTC
T ss_pred EEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHH-HHHHHhcCCCCCEEEEEECchH
Confidence 9997 444 54421 11344 4588 999999 7777666543
No 138
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.16 E-value=6.1e-11 Score=122.81 Aligned_cols=125 Identities=12% Similarity=0.072 Sum_probs=94.7
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002345 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~ 756 (933)
.++......++..+...++.+|||+|||+|.++..|++..++..+|+|+|+++.+++.|++++..... ...
T Consensus 82 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g---------~~~ 152 (280)
T 1i9g_A 82 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG---------QPP 152 (280)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT---------SCC
T ss_pred eecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---------CCC
Confidence 34555556677777777888999999999999999988511237999999999999999987653100 013
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 757 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 757 ~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
.++++.++|+.+.+.....||+|++ |++ ++...+ +++.++|+|| .+++.+|+.+
T Consensus 153 ~~v~~~~~d~~~~~~~~~~~D~v~~-----~~~-~~~~~l-~~~~~~L~pgG~l~~~~~~~~ 207 (280)
T 1i9g_A 153 DNWRLVVSDLADSELPDGSVDRAVL-----DML-APWEVL-DAVSRLLVAGGVLMVYVATVT 207 (280)
T ss_dssp TTEEEECSCGGGCCCCTTCEEEEEE-----ESS-CGGGGH-HHHHHHEEEEEEEEEEESSHH
T ss_pred CcEEEEECchHhcCCCCCceeEEEE-----CCc-CHHHHH-HHHHHhCCCCCEEEEEeCCHH
Confidence 4799999999988766778999998 444 332344 4599999999 8888888754
No 139
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.16 E-value=2e-10 Score=118.91 Aligned_cols=118 Identities=14% Similarity=0.054 Sum_probs=86.6
Q ss_pred HHHHhhcC-CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 686 ALQHIKES-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 686 Ild~L~~~-~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
+...+... ++.+|||+|||+|.++..+++.+. .+|+|+|+++.+++.|++++... ....+++++++
T Consensus 40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~-----------~~~~~v~~~~~ 106 (259)
T 3lpm_A 40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYN-----------QLEDQIEIIEY 106 (259)
T ss_dssp HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHT-----------TCTTTEEEECS
T ss_pred HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHC-----------CCcccEEEEEC
Confidence 34444555 688999999999999999999873 49999999999999999887521 12236999999
Q ss_pred CccccCC--CCCCccEEEEccccccC------------------ChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 765 SITVFDS--RLHGFDIGTCLEVIEHM------------------EEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 765 DaedLp~--~~~sFDlVVc~eVLEHL------------------pdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
|+.++.. ..++||+|+++-.+.+. .......+.+.+.++|+|| .+++..+..
T Consensus 107 D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 179 (259)
T 3lpm_A 107 DLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE 179 (259)
T ss_dssp CGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred cHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH
Confidence 9998763 46789999996544322 1123345666799999999 666655543
No 140
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.16 E-value=4.8e-10 Score=112.31 Aligned_cols=113 Identities=14% Similarity=0.032 Sum_probs=81.8
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+...+...++.+|||||||+|..+..+++..++..+|+|+|+++.+++.|++++... +...+++++++|
T Consensus 50 l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~v~~~~~d 118 (223)
T 3duw_A 50 LQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERA-----------NLNDRVEVRTGL 118 (223)
T ss_dssp HHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHT-----------TCTTTEEEEESC
T ss_pred HHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEEEcC
Confidence 333334457889999999999999999987422369999999999999999887531 122369999999
Q ss_pred ccccCCC-----CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 766 ITVFDSR-----LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 766 aedLp~~-----~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+.+.... ...||+|++....++. ..+.+.+.++|+|| .+++..+
T Consensus 119 ~~~~~~~~~~~~~~~fD~v~~d~~~~~~-----~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 119 ALDSLQQIENEKYEPFDFIFIDADKQNN-----PAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp HHHHHHHHHHTTCCCCSEEEECSCGGGH-----HHHHHHHHHTCCTTCEEEEESC
T ss_pred HHHHHHHHHhcCCCCcCEEEEcCCcHHH-----HHHHHHHHHhcCCCcEEEEeCC
Confidence 9763211 2579999987664332 23445699999999 6666544
No 141
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.15 E-value=8e-11 Score=120.84 Aligned_cols=124 Identities=18% Similarity=0.127 Sum_probs=84.9
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcC--CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc-c
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDY--PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK-S 758 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~--g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~-n 758 (933)
.++.+++.+....+.+|||+|||+|.++..+++. . +..+|+|+|+|+.+++.|++++...... +.. +
T Consensus 39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~~~~~~~---------~~~~~ 108 (250)
T 1o9g_A 39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNLALLSPA---------GLTAR 108 (250)
T ss_dssp HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHHHTTSHH---------HHHHH
T ss_pred HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHHHHhhhc---------ccccc
Confidence 3344444443335679999999999999999876 2 1268999999999999999776421000 000 1
Q ss_pred -------------------------EE-------------EEEcCccccCC-----CCCCccEEEEccccccCCh-----
Q 002345 759 -------------------------AV-------------LFDGSITVFDS-----RLHGFDIGTCLEVIEHMEE----- 790 (933)
Q Consensus 759 -------------------------Ve-------------fi~GDaedLp~-----~~~sFDlVVc~eVLEHLpd----- 790 (933)
++ +.++|+.+... ....||+|+|+-.+.+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~ 188 (250)
T 1o9g_A 109 ELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQV 188 (250)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCC
T ss_pred chhhhhhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccc
Confidence 44 99999987432 3348999999876665542
Q ss_pred --hHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 791 --DEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 791 --D~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+....+.+.+.++|+|| .+++ +++.
T Consensus 189 ~~~~~~~~l~~~~~~LkpgG~l~~-~~~~ 216 (250)
T 1o9g_A 189 PGQPVAGLLRSLASALPAHAVIAV-TDRS 216 (250)
T ss_dssp CHHHHHHHHHHHHHHSCTTCEEEE-EESS
T ss_pred cccHHHHHHHHHHHhcCCCcEEEE-eCcc
Confidence 33445666799999999 6666 5554
No 142
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.15 E-value=8e-11 Score=120.36 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR- 772 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~- 772 (933)
++.+|||||||+|.++..|+... +..+|+|+|+|+.|++.|++++.. .+..+++++++|+.+++..
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~v~~~~~d~~~~~~~~ 136 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEA------------LQLENTTFCHDRAETFGQRK 136 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHH------------HTCSSEEEEESCHHHHTTCT
T ss_pred CCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCEEEEeccHHHhcccc
Confidence 57899999999999999888532 126899999999999999887652 1334799999999887653
Q ss_pred --CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002345 773 --LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 811 (933)
Q Consensus 773 --~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LII 811 (933)
.+.||+|++..+ . +. ..+.+.+.++|+|| .+++
T Consensus 137 ~~~~~fD~V~~~~~----~-~~-~~~l~~~~~~LkpgG~l~~ 172 (240)
T 1xdz_A 137 DVRESYDIVTARAV----A-RL-SVLSELCLPLVKKNGLFVA 172 (240)
T ss_dssp TTTTCEEEEEEECC----S-CH-HHHHHHHGGGEEEEEEEEE
T ss_pred cccCCccEEEEecc----C-CH-HHHHHHHHHhcCCCCEEEE
Confidence 578999999773 2 33 34455699999999 4444
No 143
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.15 E-value=1.9e-11 Score=123.96 Aligned_cols=101 Identities=12% Similarity=0.081 Sum_probs=83.0
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEEEEEcCccccCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDGSITVFDS 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~-~nVefi~GDaedLp~ 771 (933)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|++++.. .+. .+++++++|+.+++
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~------------~~~~~~~~~~~~d~~~~~- 140 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEV------------YGIADKIEFICGDFLLLA- 140 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH------------TTCGGGEEEEESCHHHHG-
T ss_pred cCCCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHH------------cCCCcCeEEEECChHHhc-
Confidence 368899999999999999999987 7999999999999999988752 233 58999999998876
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 811 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LII 811 (933)
....||+|++..+++|+.... ..+. .+.++|+|| .+++
T Consensus 141 ~~~~~D~v~~~~~~~~~~~~~-~~~~-~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 141 SFLKADVVFLSPPWGGPDYAT-AETF-DIRTMMSPDGFEIF 179 (241)
T ss_dssp GGCCCSEEEECCCCSSGGGGG-SSSB-CTTTSCSSCHHHHH
T ss_pred ccCCCCEEEECCCcCCcchhh-hHHH-HHHhhcCCcceeHH
Confidence 457899999999999987433 2333 488999999 5443
No 144
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.15 E-value=2.4e-10 Score=114.38 Aligned_cols=113 Identities=12% Similarity=-0.010 Sum_probs=80.3
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
++...+...++.+|||||||+|..+..|++..++..+|+|+|+++.+++.|++++... ....+++++++
T Consensus 55 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~v~~~~~ 123 (225)
T 3tr6_A 55 LLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKA-----------GLSDKIGLRLS 123 (225)
T ss_dssp HHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHT-----------TCTTTEEEEES
T ss_pred HHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC-----------CCCCceEEEeC
Confidence 3333334446789999999999999999987322379999999999999999887531 12236999999
Q ss_pred CccccCC--CC----CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 765 SITVFDS--RL----HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 765 DaedLp~--~~----~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
|+.+... .. +.||+|++....+ ... .+.+.+.++|+|| .+++..
T Consensus 124 d~~~~~~~~~~~~~~~~fD~v~~~~~~~----~~~-~~l~~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 124 PAKDTLAELIHAGQAWQYDLIYIDADKA----NTD-LYYEESLKLLREGGLIAVDN 174 (225)
T ss_dssp CHHHHHHHHHTTTCTTCEEEEEECSCGG----GHH-HHHHHHHHHEEEEEEEEEEC
T ss_pred CHHHHHHHhhhccCCCCccEEEECCCHH----HHH-HHHHHHHHhcCCCcEEEEeC
Confidence 9965421 11 6899999755422 232 3445699999999 555543
No 145
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.15 E-value=2e-10 Score=124.01 Aligned_cols=113 Identities=17% Similarity=0.125 Sum_probs=84.4
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+| .|++.|++++... +...+++++++
T Consensus 29 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s-~~~~~a~~~~~~~-----------~~~~~i~~~~~ 94 (328)
T 1g6q_1 29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMS-SIIEMAKELVELN-----------GFSDKITLLRG 94 (328)
T ss_dssp HHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCC--SEEEEEESS-THHHHHHHHHHHT-----------TCTTTEEEEES
T ss_pred HHHhhHhhcCCCEEEEecCccHHHHHHHHHCCC--CEEEEEChH-HHHHHHHHHHHHc-----------CCCCCEEEEEC
Confidence 344444455788999999999999999998862 689999999 5999998876531 12346999999
Q ss_pred CccccCCCCCCccEEEEccccccCC-hhHHHHHHHHHHHccCCCEEEE
Q 002345 765 SITVFDSRLHGFDIGTCLEVIEHME-EDEASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eVLEHLp-dD~l~aL~eeI~rlLKPG~LII 811 (933)
|+.+++.+.+.||+|++..+.+++. ......+.+.+.++|+||+.++
T Consensus 95 d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 95 KLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred chhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 9999887778999999986555443 1222344456889999994444
No 146
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.14 E-value=1.6e-10 Score=127.79 Aligned_cols=122 Identities=17% Similarity=0.269 Sum_probs=90.4
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
.+++++.+....+.+|||+|||+|.++..+++.+ +..+|+|+|+|+.|++.|++++....- ....+++++
T Consensus 211 ~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl---------~~~~~v~~~ 280 (375)
T 4dcm_A 211 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMP---------EALDRCEFM 280 (375)
T ss_dssp HHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCG---------GGGGGEEEE
T ss_pred HHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCC---------CcCceEEEE
Confidence 3456777776667899999999999999999875 237999999999999999988753210 012368999
Q ss_pred EcCccccCCCCCCccEEEEcccccc---CChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 763 DGSITVFDSRLHGFDIGTCLEVIEH---MEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 763 ~GDaedLp~~~~sFDlVVc~eVLEH---LpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.+|+.+ +...+.||+|+|+..+|| +.......+.+.+.++|+|| .++|..+.
T Consensus 281 ~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 281 INNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp ECSTTT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred echhhc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 999987 345678999999999886 33344445566799999999 55555443
No 147
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.14 E-value=1.7e-10 Score=117.61 Aligned_cols=114 Identities=18% Similarity=0.098 Sum_probs=82.5
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
.++...+...++.+|||||||+|.++..+++..+...+|+|+|+++.+++.|++++... +...++++..
T Consensus 50 ~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------g~~~~v~~~~ 118 (239)
T 2hnk_A 50 QFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN-----------GLENKIFLKL 118 (239)
T ss_dssp HHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT-----------TCGGGEEEEE
T ss_pred HHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCCEEEEE
Confidence 34444444557889999999999999999886422379999999999999999887521 1223599999
Q ss_pred cCcccc-C--------------CC-C-CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 764 GSITVF-D--------------SR-L-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 764 GDaedL-p--------------~~-~-~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
+|+.+. + +. . +.||+|++....++++ .+.+.+.++|+|| .+++.+
T Consensus 119 ~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~-----~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 119 GSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYP-----NYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp SCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHH-----HHHHHHHHHEEEEEEEEEEC
T ss_pred CCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHH-----HHHHHHHHHcCCCeEEEEEc
Confidence 998653 2 11 1 6899999986654443 3345699999999 556543
No 148
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=99.14 E-value=1.4e-10 Score=125.30 Aligned_cols=113 Identities=11% Similarity=0.087 Sum_probs=82.7
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+++.+...++.+|||||||+|.++..+++.. +..+++++|++ .++. +++... .....++++..+
T Consensus 175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~--~~~~~~-----------~~~~~~v~~~~~ 239 (348)
T 3lst_A 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDRA-EVVA--RHRLDA-----------PDVAGRWKVVEG 239 (348)
T ss_dssp HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEECH-HHHT--TCCCCC-----------GGGTTSEEEEEC
T ss_pred HHHHhCCccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecCH-HHhh--cccccc-----------cCCCCCeEEEec
Confidence 34555555567899999999999999998865 23689999994 4444 211110 112347999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 765 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
|+.+ +.+ +||+|++..++||+++++...+.+++.++|||| .++|..+.
T Consensus 240 d~~~-~~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~ 288 (348)
T 3lst_A 240 DFLR-EVP--HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAV 288 (348)
T ss_dssp CTTT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred CCCC-CCC--CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 9962 222 899999999999999766556667799999999 77776653
No 149
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.13 E-value=1.8e-10 Score=113.74 Aligned_cols=110 Identities=13% Similarity=0.034 Sum_probs=81.3
Q ss_pred HHHHHHHhhcC---CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002345 683 VEYALQHIKES---CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759 (933)
Q Consensus 683 ve~Ild~L~~~---~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV 759 (933)
.+.+++.+... ++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++.. .+..++
T Consensus 51 ~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~v 117 (207)
T 1jsx_A 51 VRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHE------------LKLENI 117 (207)
T ss_dssp HHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH------------TTCSSE
T ss_pred HHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCe
Confidence 34444544332 47899999999999999998763 236999999999999999987652 234469
Q ss_pred EEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 760 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 760 efi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
++.++|+.+.+ ..+.||+|++..+ ++ . ..+.+.+.++|+|| .+++.
T Consensus 118 ~~~~~d~~~~~-~~~~~D~i~~~~~-~~----~-~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 118 EPVQSRVEEFP-SEPPFDGVISRAF-AS----L-NDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp EEEECCTTTSC-CCSCEEEEECSCS-SS----H-HHHHHHHTTSEEEEEEEEEE
T ss_pred EEEecchhhCC-ccCCcCEEEEecc-CC----H-HHHHHHHHHhcCCCcEEEEE
Confidence 99999998876 3568999998653 22 2 24445699999999 55554
No 150
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.13 E-value=1.1e-10 Score=118.46 Aligned_cols=104 Identities=7% Similarity=0.094 Sum_probs=78.9
Q ss_pred HHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002345 688 QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 767 (933)
Q Consensus 688 d~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDae 767 (933)
+.+...++.+|||+|||+|.++..|++..+ ..+|+|+|+|+.|++.|++++. ...++.++.+|+.
T Consensus 68 ~~~~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~--------------~~~~v~~~~~d~~ 132 (230)
T 1fbn_A 68 KVMPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACA--------------ERENIIPILGDAN 132 (230)
T ss_dssp CCCCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTT--------------TCTTEEEEECCTT
T ss_pred cccCCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhh--------------cCCCeEEEECCCC
Confidence 333344678999999999999999998742 3689999999999999987643 1258999999998
Q ss_pred c----cCCCCCCccEEEEccccccCCh-hHHHHHHHHHHHccCCC-EEEEE
Q 002345 768 V----FDSRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 768 d----Lp~~~~sFDlVVc~eVLEHLpd-D~l~aL~eeI~rlLKPG-~LIIT 812 (933)
+ .+.. ..||+|+ +|++. +....+.+++.++|+|| .+++.
T Consensus 133 ~~~~~~~~~-~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 133 KPQEYANIV-EKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp CGGGGTTTS-CCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcccccccC-ccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 7 5555 6899998 45542 23345456699999999 55554
No 151
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=99.13 E-value=4.3e-10 Score=122.45 Aligned_cols=116 Identities=13% Similarity=0.055 Sum_probs=83.8
Q ss_pred HHHHHhh-cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc--cEEE
Q 002345 685 YALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK--SAVL 761 (933)
Q Consensus 685 ~Ild~L~-~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~--nVef 761 (933)
++.+.+. ..++.+|||+|||+|.++..+++.+ .+|+|||+|+.+++.|++++... +.. ++++
T Consensus 143 ~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~g---a~V~~VD~s~~al~~a~~n~~~~------------gl~~~~v~~ 207 (332)
T 2igt_A 143 WLKNAVETADRPLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVLA------------GLEQAPIRW 207 (332)
T ss_dssp HHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHHH------------TCTTSCEEE
T ss_pred HHHHHHHhcCCCCcEEEcccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHc------------CCCccceEE
Confidence 4455554 3456799999999999999999986 59999999999999999886521 222 4999
Q ss_pred EEcCccccCCC----CCCccEEEEccc---------cccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 762 FDGSITVFDSR----LHGFDIGTCLEV---------IEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 762 i~GDaedLp~~----~~sFDlVVc~eV---------LEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+++|+.++... ...||+|++.-- +.+.. +....+.+.+.++|+|| .+++++.+.
T Consensus 208 i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~-~~~~~ll~~~~~~LkpgG~lli~~~~~ 275 (332)
T 2igt_A 208 ICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLF-DHLPLMLDICREILSPKALGLVLTAYS 275 (332)
T ss_dssp ECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHH-HHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred EECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHH-HHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence 99999875432 468999999321 11222 23334455689999999 667766653
No 152
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=99.13 E-value=2.9e-10 Score=112.34 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=72.2
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
..++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++. +++++++|+.+++
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~-----------------~~~~~~~d~~~~~- 108 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCG-----------------GVNFMVADVSEIS- 108 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCT-----------------TSEEEECCGGGCC-
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhcC-----------------CCEEEECcHHHCC-
Confidence 4467899999999999999999885 2579999999999999987531 6899999998874
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LII 811 (933)
..||+|++...++|+.......+.+.+.+.+ |.+++
T Consensus 109 --~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~ 144 (200)
T 1ne2_A 109 --GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYS 144 (200)
T ss_dssp --CCEEEEEECCCC-------CHHHHHHHHHHE--EEEEE
T ss_pred --CCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEE
Confidence 6899999999999997433334555688887 63333
No 153
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.12 E-value=1.7e-09 Score=111.83 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=81.8
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+...+...++.+|||||||+|..+..|++..++..+|+|+|+++.+++.|++++... +...+++++++|
T Consensus 55 l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------g~~~~v~~~~~d 123 (248)
T 3tfw_A 55 LALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLA-----------GVDQRVTLREGP 123 (248)
T ss_dssp HHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHT-----------TCTTTEEEEESC
T ss_pred HHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEEEcC
Confidence 333334457889999999999999999987422379999999999999999887531 122479999999
Q ss_pred ccc-cCCC--CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 766 ITV-FDSR--LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 766 aed-Lp~~--~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+.+ ++.. .+.||+|++..... .. ..+.+.+.++|||| .+++...
T Consensus 124 ~~~~l~~~~~~~~fD~V~~d~~~~----~~-~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 124 ALQSLESLGECPAFDLIFIDADKP----NN-PHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp HHHHHHTCCSCCCCSEEEECSCGG----GH-HHHHHHHHHTCCTTCEEEEECC
T ss_pred HHHHHHhcCCCCCeEEEEECCchH----HH-HHHHHHHHHhcCCCeEEEEeCC
Confidence 976 3322 34899999865422 22 23445699999999 6666443
No 154
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.12 E-value=1.6e-10 Score=117.21 Aligned_cols=105 Identities=10% Similarity=0.047 Sum_probs=79.2
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-- 769 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL-- 769 (933)
..++.+|||+|||+|.++..|++..++..+|+|+|+|+.|++.+.+.... ..+++++++|+.+.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~--------------~~~v~~~~~d~~~~~~ 140 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--------------RTNIIPVIEDARHPHK 140 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH--------------CTTEEEECSCTTCGGG
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc--------------cCCeEEEEcccCChhh
Confidence 44678999999999999999998621236899999999988887765441 14799999999873
Q ss_pred -CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 770 -DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 770 -p~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+.....||+|++... .++....+.+++.++|+|| .++++++
T Consensus 141 ~~~~~~~~D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 141 YRMLIAMVDVIFADVA----QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp GGGGCCCEEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccCCcEEEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 345678999999554 2344445555699999999 6666544
No 155
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.12 E-value=1.3e-10 Score=130.98 Aligned_cols=126 Identities=13% Similarity=0.086 Sum_probs=91.9
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhh---hhcccccCCCC
Q 002345 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK---LSKKLDAAVPC 753 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~---ls~~~~~~~Pr 753 (933)
+.....+..+++.+...++.+|||||||+|.++..++...+ ..+|+|||+|+.+++.|++++... .... .
T Consensus 156 Et~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~------G 228 (438)
T 3uwp_A 156 ETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWY------G 228 (438)
T ss_dssp GTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHH------T
T ss_pred CCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHh------C
Confidence 34455566677777777889999999999999999886432 246999999999999998754311 0000 0
Q ss_pred CCCccEEEEEcCccccCCCC--CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 754 TDVKSAVLFDGSITVFDSRL--HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 754 ~~~~nVefi~GDaedLp~~~--~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
....+++|++||+.++++.+ ..||+|+++.++ | .++....|. ++++.|||| .++++
T Consensus 229 l~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F-~pdl~~aL~-Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 229 KKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA-F-GPEVDHQLK-ERFANMKEGGRIVSS 287 (438)
T ss_dssp BCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-C-CHHHHHHHH-HHHTTSCTTCEEEES
T ss_pred CCCCCeEEEECcccCCccccccCCccEEEEcccc-c-CchHHHHHH-HHHHcCCCCcEEEEe
Confidence 01258999999999887643 479999998776 3 346666776 599999999 55443
No 156
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.12 E-value=6.9e-11 Score=128.02 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=92.7
Q ss_pred cCCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002345 674 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 753 (933)
Q Consensus 674 F~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr 753 (933)
|..+....-.+.+++.+....+.+|||+|||+|.++..+++.++ ..+|+|+|+|+.|++.|++++..
T Consensus 176 f~~~~~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~------------ 242 (343)
T 2pjd_A 176 FSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAA------------ 242 (343)
T ss_dssp TTSSSCCHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHH------------
T ss_pred cCCCCCcHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHH------------
Confidence 33333333345566777555667999999999999999998762 35899999999999999988652
Q ss_pred CCCccEEEEEcCccccCCCCCCccEEEEccccccC---ChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 754 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHM---EEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 754 ~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHL---pdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.+ ..++++.+|+.+.. .++||+|+++.++||. ..+....+.+++.++|+|| .+++.+++
T Consensus 243 ~~-~~~~~~~~d~~~~~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 243 NG-VEGEVFASNVFSEV--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp TT-CCCEEEECSTTTTC--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred hC-CCCEEEEccccccc--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 11 23677899987643 5689999999999873 2233455566799999999 66666654
No 157
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.12 E-value=2.1e-10 Score=124.48 Aligned_cols=128 Identities=12% Similarity=-0.008 Sum_probs=95.4
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002345 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~ 756 (933)
|+.......++..+...++.+|||+|||+|.++..++..+++..+|+|+|+|+.|++.|++++.. .+.
T Consensus 186 ~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~------------~g~ 253 (354)
T 3tma_A 186 SLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALA------------SGL 253 (354)
T ss_dssp SCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHH------------TTC
T ss_pred CcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHH------------cCC
Confidence 34444445556666666788999999999999999988542236899999999999999988752 233
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccccccCCh------hHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 757 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE------DEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 757 ~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpd------D~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
.++++.++|+.+++.....||+|+++-...+... +....+.+.+.++|+|| .+++.|++.
T Consensus 254 ~~i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~ 320 (354)
T 3tma_A 254 SWIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP 320 (354)
T ss_dssp TTCEEEECCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred CceEEEeCChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 4899999999998877778999999654332111 11245566799999998 888888874
No 158
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.11 E-value=1.9e-10 Score=120.01 Aligned_cols=122 Identities=11% Similarity=0.028 Sum_probs=85.3
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEEEEEc
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDG 764 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~-~nVefi~G 764 (933)
+...+...++.+|||+|||+|.++..|++.. +..+|+|||+++.+++.|++++.... ..+. .+++++++
T Consensus 28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~---------~~~l~~~v~~~~~ 97 (260)
T 2ozv_A 28 LASLVADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPD---------NAAFSARIEVLEA 97 (260)
T ss_dssp HHHTCCCCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGG---------GTTTGGGEEEEEC
T ss_pred HHHHhcccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhh---------hCCCcceEEEEeC
Confidence 3344445567899999999999999998875 23689999999999999998764100 0122 36999999
Q ss_pred CccccC-------CCCCCccEEEEccccc----------------cCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 765 SITVFD-------SRLHGFDIGTCLEVIE----------------HMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 765 DaedLp-------~~~~sFDlVVc~eVLE----------------HLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
|+.+.. +....||+|+++-.+. |........+.+.+.++|+|| .+++..+...
T Consensus 98 D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 174 (260)
T 2ozv_A 98 DVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQS 174 (260)
T ss_dssp CTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGG
T ss_pred CHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHH
Confidence 998862 3467899999973221 222222445666799999999 6666665543
No 159
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.11 E-value=1.9e-10 Score=117.72 Aligned_cols=101 Identities=8% Similarity=-0.017 Sum_probs=75.8
Q ss_pred CCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEEEEEcCccccCC--
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDGSITVFDS-- 771 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~-~nVefi~GDaedLp~-- 771 (933)
..+|||||||+|..+..|++..++..+|+++|+++++++.|++++... +.. .+++++++|+.+...
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------g~~~~~i~~~~gda~~~l~~~ 125 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREA-----------GYSPSRVRFLLSRPLDVMSRL 125 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHT-----------TCCGGGEEEECSCHHHHGGGS
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCcCcEEEEEcCHHHHHHHh
Confidence 349999999999999999874322379999999999999999887631 122 479999999877532
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LII 811 (933)
..++||+|++....++.. .+.+.+.++||||++++
T Consensus 126 ~~~~fD~V~~d~~~~~~~-----~~l~~~~~~LkpGG~lv 160 (221)
T 3dr5_A 126 ANDSYQLVFGQVSPMDLK-----ALVDAAWPLLRRGGALV 160 (221)
T ss_dssp CTTCEEEEEECCCTTTHH-----HHHHHHHHHEEEEEEEE
T ss_pred cCCCcCeEEEcCcHHHHH-----HHHHHHHHHcCCCcEEE
Confidence 257899999876543332 34456999999994444
No 160
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.11 E-value=2.3e-10 Score=122.79 Aligned_cols=113 Identities=15% Similarity=0.197 Sum_probs=81.9
Q ss_pred CCCCEEEEEcCCc--ChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 693 SCATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 693 ~~g~rVLDIGCGt--G~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
....+|||||||. +.++..+++...+..+|+|||+|+.||+.|++++.. ....++.|+++|+.+++
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~------------~~~~~~~~v~aD~~~~~ 144 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAS------------TPEGRTAYVEADMLDPA 144 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCC------------CSSSEEEEEECCTTCHH
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhcc------------CCCCcEEEEEecccChh
Confidence 3557999999997 444444443211237999999999999999887641 12347999999998853
Q ss_pred C----C--CCCcc-----EEEEccccccCChhH--HHHHHHHHHHccCCC-EEEEEecCCch
Q 002345 771 S----R--LHGFD-----IGTCLEVIEHMEEDE--ASQFGNIVLSSFRPR-ILIVSTPNYEY 818 (933)
Q Consensus 771 ~----~--~~sFD-----lVVc~eVLEHLpdD~--l~aL~eeI~rlLKPG-~LIITTPN~ef 818 (933)
. + ...|| +|+++.+|||+++++ ...+ +.+.+.|+|| .+++++...++
T Consensus 145 ~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l-~~l~~~L~PGG~Lvls~~~~d~ 205 (277)
T 3giw_A 145 SILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIV-RRLLEPLPSGSYLAMSIGTAEF 205 (277)
T ss_dssp HHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHH-HHHHTTSCTTCEEEEEEECCTT
T ss_pred hhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHH-HHHHHhCCCCcEEEEEeccCCC
Confidence 1 1 23455 689999999999653 3444 4599999999 88888776654
No 161
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.11 E-value=4e-10 Score=113.98 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002345 680 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759 (933)
Q Consensus 680 ~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV 759 (933)
......++..+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++... ....++
T Consensus 77 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~~ 142 (248)
T 2yvl_A 77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVA---GEVWTFEAVEEFYKTAQKNLKKF-----------NLGKNV 142 (248)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHHHHT-----------TCCTTE
T ss_pred chhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHc-----------CCCCcE
Confidence 3444566677776778899999999999999998874 79999999999999999876521 112579
Q ss_pred EEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 760 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 760 efi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
++..+|+.+.......||+|++ +.+ ++...+ +.+.++|+|| .+++.+|+.+
T Consensus 143 ~~~~~d~~~~~~~~~~~D~v~~-----~~~-~~~~~l-~~~~~~L~~gG~l~~~~~~~~ 194 (248)
T 2yvl_A 143 KFFNVDFKDAEVPEGIFHAAFV-----DVR-EPWHYL-EKVHKSLMEGAPVGFLLPTAN 194 (248)
T ss_dssp EEECSCTTTSCCCTTCBSEEEE-----CSS-CGGGGH-HHHHHHBCTTCEEEEEESSHH
T ss_pred EEEEcChhhcccCCCcccEEEE-----CCc-CHHHHH-HHHHHHcCCCCEEEEEeCCHH
Confidence 9999999885434568999998 344 333344 4599999999 8888888753
No 162
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.10 E-value=9.2e-11 Score=118.67 Aligned_cols=91 Identities=14% Similarity=0.105 Sum_probs=73.8
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc-cccCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI-TVFDS 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDa-edLp~ 771 (933)
.++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|+++ .++++++++|+ ..+++
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----------------~~~~~~~~~d~~~~~~~ 106 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARAN-----------------APHADVYEWNGKGELPA 106 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHH-----------------CTTSEEEECCSCSSCCT
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHh-----------------CCCceEEEcchhhccCC
Confidence 467899999999999999999986 6999999999999999775 13689999999 56776
Q ss_pred C-CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002345 772 R-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 772 ~-~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LII 811 (933)
. .++||+|++.. +....+ +++.++||||+.++
T Consensus 107 ~~~~~fD~v~~~~-------~~~~~l-~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 107 GLGAPFGLIVSRR-------GPTSVI-LRLPELAAPDAHFL 139 (226)
T ss_dssp TCCCCEEEEEEES-------CCSGGG-GGHHHHEEEEEEEE
T ss_pred cCCCCEEEEEeCC-------CHHHHH-HHHHHHcCCCcEEE
Confidence 6 78999999972 222233 35999999995555
No 163
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.10 E-value=1.7e-10 Score=116.50 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=84.8
Q ss_pred HHHHhh--cCCCCEEEEEcCCcChHHHHHhcCCCC-----CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002345 686 ALQHIK--ESCATTLVDFGCGSGSLLDSLLDYPTA-----LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 758 (933)
Q Consensus 686 Ild~L~--~~~g~rVLDIGCGtG~fL~~LAr~g~~-----f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~n 758 (933)
+++.+. ..++.+|||||||+|.++..|++..+. ..+|+|+|+++.+++.|++++...... .....+
T Consensus 74 ~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-------~~~~~~ 146 (227)
T 1r18_A 74 ALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS-------MLDSGQ 146 (227)
T ss_dssp HHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH-------HHHHTS
T ss_pred HHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcc-------ccCCCc
Confidence 444442 446789999999999999998874310 138999999999999999876531100 000347
Q ss_pred EEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 759 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 759 Vefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+++..+|+.+.......||+|++..+++|+. +.+.++|+|| .+++++..
T Consensus 147 v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 147 LLIVEGDGRKGYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EEEEESCGGGCCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred eEEEECCcccCCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEec
Confidence 9999999987322236899999999999997 3478899999 77777764
No 164
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.09 E-value=3.2e-10 Score=129.40 Aligned_cols=111 Identities=18% Similarity=0.189 Sum_probs=86.4
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+.+++.+...++.+|||||||+|.++..+++.+. .+|+|+|+|+ |++.|++++... +...++++++
T Consensus 148 ~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~-----------gl~~~v~~~~ 213 (480)
T 3b3j_A 148 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSN-----------NLTDRIVVIP 213 (480)
T ss_dssp HHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHT-----------TCTTTEEEEE
T ss_pred HHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHc-----------CCCCcEEEEE
Confidence 4455555556788999999999999999998763 6999999998 999998876531 1225799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhH-HHHHHHHHHHccCCC-EEE
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDE-ASQFGNIVLSSFRPR-ILI 810 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~-l~aL~eeI~rlLKPG-~LI 810 (933)
+|+.+++.+ +.||+|++..+++|+..+. ...+. .+.++|+|| .++
T Consensus 214 ~d~~~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~-~~~~~LkpgG~li 260 (480)
T 3b3j_A 214 GKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYL-HAKKYLKPSGNMF 260 (480)
T ss_dssp SCTTTCCCS-SCEEEEECCCCHHHHTCHHHHHHHH-HGGGGEEEEEEEE
T ss_pred CchhhCccC-CCeEEEEEeCchHhcCcHHHHHHHH-HHHHhcCCCCEEE
Confidence 999987654 5899999998888886443 34444 589999999 444
No 165
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=99.09 E-value=7.6e-10 Score=121.15 Aligned_cols=107 Identities=14% Similarity=0.150 Sum_probs=83.3
Q ss_pred HHHHhh-cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 686 ALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 686 Ild~L~-~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
+++.+. ..+..+|||||||+|.++..+++.. +..+++++|+ +.+++.|++ .+++++..+
T Consensus 194 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~ 253 (368)
T 3reo_A 194 ILEMYNGFEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPA------------------FSGVEHLGG 253 (368)
T ss_dssp HHTTCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------------------CTTEEEEEC
T ss_pred HHHhcccccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhh------------------cCCCEEEec
Confidence 444443 3456899999999999999998865 2368999999 888876631 247999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 765 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
|+.+ +.+. . |+|++..++||++++....+.++++++|+|| .++|....
T Consensus 254 d~~~-~~p~-~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 302 (368)
T 3reo_A 254 DMFD-GVPK-G-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI 302 (368)
T ss_dssp CTTT-CCCC-C-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred CCCC-CCCC-C-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 9987 4443 3 9999999999999776666667799999999 77776543
No 166
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=99.08 E-value=1.6e-09 Score=118.10 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=89.2
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
.+++.+......+|||||||+|.++..+++..+ ..+++..|. +.+++.|++.+. .....+|++..+
T Consensus 170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p-~~~~~~~dl-p~v~~~a~~~~~------------~~~~~rv~~~~g 235 (353)
T 4a6d_A 170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLYP-GCKITVFDI-PEVVWTAKQHFS------------FQEEEQIDFQEG 235 (353)
T ss_dssp HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCS-SCEEEEEEC-HHHHHHHHHHSC------------C--CCSEEEEES
T ss_pred HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCC-CceeEeccC-HHHHHHHHHhhh------------hcccCceeeecC
Confidence 344444445678999999999999999998763 468899996 889999987643 224568999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 765 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
|+.+.+. ..+|+|++..+||+.+++....+.+++++.|+|| .++|..+
T Consensus 236 D~~~~~~--~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 236 DFFKDPL--PEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp CTTTSCC--CCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ccccCCC--CCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 9976543 4689999999999999777777777899999999 6666553
No 167
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.08 E-value=3.6e-10 Score=113.75 Aligned_cols=104 Identities=14% Similarity=0.119 Sum_probs=78.1
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 770 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp- 770 (933)
..++.+|||+|||+|.++..|++..++..+|+|+|+|+.|++.+++++.. ..+++++++|+.+..
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~--------------~~~v~~~~~d~~~~~~ 136 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--------------RRNIVPILGDATKPEE 136 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--------------CTTEEEEECCTTCGGG
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc--------------cCCCEEEEccCCCcch
Confidence 44678999999999999999987621236899999999999999876531 158999999998742
Q ss_pred --CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 771 --SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 771 --~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
....+||+|++... .++....+.+++.++|+|| .+++..
T Consensus 137 ~~~~~~~~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 137 YRALVPKVDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp GTTTCCCEEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcccCCceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 12358999998654 2244445455699999999 555553
No 168
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.07 E-value=8.8e-10 Score=116.26 Aligned_cols=121 Identities=11% Similarity=0.085 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeC-ChHHHHHHHHHHhhhhhcccccCCCCCCC--
Q 002345 680 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDI-SQKSLSRAAKIIHSKLSKKLDAAVPCTDV-- 756 (933)
Q Consensus 680 ~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDI-S~emLe~ArkrL~a~ls~~~~~~~Pr~~~-- 756 (933)
....+++.......++.+|||||||+|.++..+++.+. .+|+|+|+ |+.+++.|++++...... ..+.
T Consensus 65 ~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~-------~~~~~~ 135 (281)
T 3bzb_A 65 RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTAN-------SCSSET 135 (281)
T ss_dssp HHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC--------------
T ss_pred HHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhh-------hccccc
Confidence 33445555555445778999999999999999998862 58999999 899999999876311000 1111
Q ss_pred ---ccEEEEEcCccccC--C----CCCCccEEEEccccccCChhHHHHHHHHHHHccC---C--C-EEEE
Q 002345 757 ---KSAVLFDGSITVFD--S----RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFR---P--R-ILIV 811 (933)
Q Consensus 757 ---~nVefi~GDaedLp--~----~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLK---P--G-~LII 811 (933)
.++++...+..+.. . ....||+|++..+++|.+ +.... .+.+.++|+ | | .+++
T Consensus 136 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~-~~~~l-l~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 136 VKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ-AHDAL-LRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp ---CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGG-GHHHH-HHHHHHHBCCTTTCTTCEEEE
T ss_pred CCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChH-HHHHH-HHHHHHHhcccCCCCCCEEEE
Confidence 36788866654321 1 246899999999999976 44344 456999999 8 7 4444
No 169
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.07 E-value=3.2e-10 Score=110.63 Aligned_cols=95 Identities=13% Similarity=0.196 Sum_probs=74.6
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+|||+|||+|.++..|++.+ +|+|+|+|+.|++. . .+++++++|+.+ +..
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~-----~----------------~~~~~~~~d~~~-~~~ 75 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES-----H----------------RGGNLVRADLLC-SIN 75 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT-----C----------------SSSCEEECSTTT-TBC
T ss_pred CCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc-----c----------------cCCeEEECChhh-hcc
Confidence 567899999999999999999874 89999999999976 1 257899999987 444
Q ss_pred CCCccEEEEccccccCChh--------HHHHHHHHHHHccCCC-EEEEEecC
Q 002345 773 LHGFDIGTCLEVIEHMEED--------EASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD--------~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.+.||+|+++..+++.++. ....+. .+.+.+ || .+++.++.
T Consensus 76 ~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 76 QESVDVVVFNPPYVPDTDDPIIGGGYLGREVID-RFVDAV-TVGMLYLLVIE 125 (170)
T ss_dssp GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHH-HHHHHC-CSSEEEEEEEG
T ss_pred cCCCCEEEECCCCccCCccccccCCcchHHHHH-HHHhhC-CCCEEEEEEec
Confidence 5789999999998876533 233444 477777 88 77776643
No 170
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.07 E-value=2.7e-10 Score=107.17 Aligned_cols=109 Identities=12% Similarity=0.018 Sum_probs=81.5
Q ss_pred HHHHhh-cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 686 ALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 686 Ild~L~-~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
+.+.+. ..++.+|||+|||+|.++..+++..++..+++|+|+++ +++. .++++.++
T Consensus 13 ~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------------------~~~~~~~~ 69 (180)
T 1ej0_A 13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------------------VGVDFLQG 69 (180)
T ss_dssp HHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------------------TTEEEEES
T ss_pred HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------------------CcEEEEEc
Confidence 334433 34678999999999999999988621226999999998 6421 36899999
Q ss_pred CccccC--------CCCCCccEEEEccccccCChhH---H------HHHHHHHHHccCCC-EEEEEecCCc
Q 002345 765 SITVFD--------SRLHGFDIGTCLEVIEHMEEDE---A------SQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 765 DaedLp--------~~~~sFDlVVc~eVLEHLpdD~---l------~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
|+.+.+ ...+.||+|++..++++..... . ..+.+.+.++|+|| .+++.+++..
T Consensus 70 d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 140 (180)
T 1ej0_A 70 DFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp CTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred ccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 998876 5567899999999998876321 1 34455699999999 7777777654
No 171
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.06 E-value=3.2e-10 Score=116.47 Aligned_cols=123 Identities=12% Similarity=0.099 Sum_probs=83.2
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc-cC--
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-FD-- 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaed-Lp-- 770 (933)
++.+|||||||+|.++..+++.++ ...|+|||+|+.+++.|++++....... ....+..++.++++|+.+ ++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~----~~~~~~~nv~~~~~D~~~~l~~~ 123 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNT----ASKHGFQNINVLRGNAMKFLPNF 123 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-----CCSTTTTEEEEECCTTSCGGGT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhcc----ccccCCCcEEEEeccHHHHHHHh
Confidence 567999999999999999998762 3589999999999999988765321100 000134589999999987 54
Q ss_pred CCCCCccEEEEccccccCChh------HHHHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002345 771 SRLHGFDIGTCLEVIEHMEED------EASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 821 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLpdD------~l~aL~eeI~rlLKPG-~LIITTPN~efNs~ 821 (933)
+..+.+|.|++...-.+.... ....+.+.+.++|+|| .+++.|.+.++..+
T Consensus 124 ~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~ 181 (246)
T 2vdv_E 124 FEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEW 181 (246)
T ss_dssp SCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHH
T ss_pred ccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHH
Confidence 456789998854211111000 0024455699999999 77777776554433
No 172
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=99.05 E-value=2.2e-09 Score=106.07 Aligned_cols=100 Identities=13% Similarity=0.184 Sum_probs=77.9
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
..++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++.. .+. +++++++|+.+++
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~------------~~~-~~~~~~~d~~~~~- 110 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGE------------FKG-KFKVFIGDVSEFN- 110 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGG------------GTT-SEEEEESCGGGCC-
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHH------------cCC-CEEEEECchHHcC-
Confidence 44678999999999999999998862 5899999999999999887542 122 7999999998874
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LII 811 (933)
..||+|++.-.+++........+.+.+.+++ |.+++
T Consensus 111 --~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~ 146 (207)
T 1wy7_A 111 --SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYS 146 (207)
T ss_dssp --CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEE
T ss_pred --CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEE
Confidence 4899999998887775333334555688888 63333
No 173
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.05 E-value=1.6e-10 Score=118.64 Aligned_cols=108 Identities=11% Similarity=0.074 Sum_probs=72.4
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCC-hHHHHHH---HHHHhhhhhcccccCCCCCCCccEEEEEcCccc
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDIS-QKSLSRA---AKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 768 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS-~emLe~A---rkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaed 768 (933)
.++.+|||||||+|.++..|++.. +..+|+|||+| +.|++.| ++++. ..+..++.+.++|+.+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~------------~~~~~~v~~~~~d~~~ 89 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPS------------KGGLSNVVFVIAAAES 89 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGG------------GTCCSSEEEECCBTTB
T ss_pred CCCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHH------------HcCCCCeEEEEcCHHH
Confidence 467799999999999999998543 23789999999 7787776 44322 2345689999999998
Q ss_pred cCCCCCCccEEEEccccccCC-------hhHHHHHHHHHHHccCCC-EEEE-EecCC
Q 002345 769 FDSRLHGFDIGTCLEVIEHME-------EDEASQFGNIVLSSFRPR-ILIV-STPNY 816 (933)
Q Consensus 769 Lp~~~~sFDlVVc~eVLEHLp-------dD~l~aL~eeI~rlLKPG-~LII-TTPN~ 816 (933)
++.. .||.|.+..+..+.+ .+....| +++.++|||| .+++ ++.+.
T Consensus 90 l~~~--~~d~v~~i~~~~~~~~~~~~~~~~~~~~l-~~~~r~LkpGG~l~i~~~~~~ 143 (225)
T 3p2e_A 90 LPFE--LKNIADSISILFPWGTLLEYVIKPNRDIL-SNVADLAKKEAHFEFVTTYSD 143 (225)
T ss_dssp CCGG--GTTCEEEEEEESCCHHHHHHHHTTCHHHH-HHHHTTEEEEEEEEEEECCCC
T ss_pred hhhh--ccCeEEEEEEeCCCcHHhhhhhcchHHHH-HHHHHhcCCCcEEEEEEeccc
Confidence 8532 235555444432221 1122344 4699999999 5555 44443
No 174
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.04 E-value=2.7e-10 Score=117.97 Aligned_cols=113 Identities=12% Similarity=0.084 Sum_probs=82.1
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
.++...+...++.+|||||||+|..+..|++..++..+|+|+|+++.+++.|++++... +...++++++
T Consensus 50 ~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----------g~~~~i~~~~ 118 (242)
T 3r3h_A 50 QFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREA-----------KQEHKIKLRL 118 (242)
T ss_dssp HHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHT-----------TCTTTEEEEE
T ss_pred HHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEEE
Confidence 33444444456789999999999999999985422379999999999999999887531 1234799999
Q ss_pred cCccccCCC------CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 764 GSITVFDSR------LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 764 GDaedLp~~------~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
+|+.+.... .+.||+|++..... +.. .+.+.+.++|+|| .+++.
T Consensus 119 gda~~~l~~~~~~~~~~~fD~V~~d~~~~----~~~-~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 119 GPALDTLHSLLNEGGEHQFDFIFIDADKT----NYL-NYYELALKLVTPKGLIAID 169 (242)
T ss_dssp SCHHHHHHHHHHHHCSSCEEEEEEESCGG----GHH-HHHHHHHHHEEEEEEEEEE
T ss_pred cCHHHHHHHHhhccCCCCEeEEEEcCChH----HhH-HHHHHHHHhcCCCeEEEEE
Confidence 999764322 47899999875522 222 3445699999999 55554
No 175
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.04 E-value=4.7e-10 Score=113.54 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=85.4
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
...++...+...++.+|||||||+|.++..+++..+ ..+|+|+|+++.+++.|++++... +...++++
T Consensus 42 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~v~~ 109 (233)
T 2gpy_A 42 GMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKAL-----------GLESRIEL 109 (233)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHT-----------TCTTTEEE
T ss_pred HHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEE
Confidence 334455555555788999999999999999988641 379999999999999999887521 12246999
Q ss_pred EEcCcccc-CCC--CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 762 FDGSITVF-DSR--LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 762 i~GDaedL-p~~--~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
..+|+.+. +.. .+.||+|++....+ +.. .+.+.+.++|+|| .+++.+.
T Consensus 110 ~~~d~~~~~~~~~~~~~fD~I~~~~~~~----~~~-~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 110 LFGDALQLGEKLELYPLFDVLFIDAAKG----QYR-RFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp ECSCGGGSHHHHTTSCCEEEEEEEGGGS----CHH-HHHHHHGGGEEEEEEEEEETT
T ss_pred EECCHHHHHHhcccCCCccEEEECCCHH----HHH-HHHHHHHHHcCCCeEEEEEcC
Confidence 99999874 322 46899999987754 222 3445699999999 6666543
No 176
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.04 E-value=4.6e-10 Score=120.81 Aligned_cols=118 Identities=18% Similarity=0.162 Sum_probs=86.3
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+...+...++.+|||+|||+|..+..|++......+|+|+|+|+.+++.+++++.. .+..+++++++|
T Consensus 110 ~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~------------~g~~~v~~~~~D 177 (315)
T 1ixk_A 110 PPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR------------LGVLNVILFHSS 177 (315)
T ss_dssp HHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH------------HTCCSEEEESSC
T ss_pred HHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHH------------hCCCeEEEEECC
Confidence 34455566788999999999999999987532226899999999999999988752 234579999999
Q ss_pred ccccCCCCCCccEEEE------ccccccCCh-------hH-------HHHHHHHHHHccCCC-EEEEEecC
Q 002345 766 ITVFDSRLHGFDIGTC------LEVIEHMEE-------DE-------ASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 766 aedLp~~~~sFDlVVc------~eVLEHLpd-------D~-------l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+.+++...+.||+|++ ..++.+.++ +. ...+.+.+.++|||| .++++|..
T Consensus 178 ~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 178 SLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp GGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hhhcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 9987655668999998 344554431 10 134555699999999 77776654
No 177
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.04 E-value=6.1e-10 Score=116.14 Aligned_cols=121 Identities=10% Similarity=0.053 Sum_probs=91.5
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002345 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~ 756 (933)
.++......++..+...++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++... ...
T Consensus 95 ~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~~ 163 (277)
T 1o54_A 95 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW-----------GLI 163 (277)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT-----------TCG
T ss_pred ccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc-----------CCC
Confidence 344555566777777778899999999999999999887212379999999999999999876521 112
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 757 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 757 ~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
.++++..+|+.+. ...+.||+|++ +++ ++...+ +.+.++|+|| .+++.+|+.
T Consensus 164 ~~v~~~~~d~~~~-~~~~~~D~V~~-----~~~-~~~~~l-~~~~~~L~pgG~l~~~~~~~ 216 (277)
T 1o54_A 164 ERVTIKVRDISEG-FDEKDVDALFL-----DVP-DPWNYI-DKCWEALKGGGRFATVCPTT 216 (277)
T ss_dssp GGEEEECCCGGGC-CSCCSEEEEEE-----CCS-CGGGTH-HHHHHHEEEEEEEEEEESSH
T ss_pred CCEEEEECCHHHc-ccCCccCEEEE-----CCc-CHHHHH-HHHHHHcCCCCEEEEEeCCH
Confidence 5799999999876 45568999998 344 333344 4599999999 788877753
No 178
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.04 E-value=5.1e-10 Score=111.57 Aligned_cols=105 Identities=13% Similarity=0.068 Sum_probs=77.3
Q ss_pred hcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-
Q 002345 691 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF- 769 (933)
Q Consensus 691 ~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL- 769 (933)
...++.+|||||||+|..+..|++..+...+|+|+|+|+.+++.|++++... ....+++++++|+.+.
T Consensus 53 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~ 121 (210)
T 3c3p_A 53 RIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN-----------GLIDRVELQVGDPLGIA 121 (210)
T ss_dssp HHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-----------SGGGGEEEEESCHHHHH
T ss_pred HhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-----------CCCceEEEEEecHHHHh
Confidence 3346789999999999999999987421379999999999999999876531 1124699999999764
Q ss_pred CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 770 DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 770 p~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
+...+ ||+|++....+ +. ..+.+.+.++|+|| .+++.
T Consensus 122 ~~~~~-fD~v~~~~~~~----~~-~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 122 AGQRD-IDILFMDCDVF----NG-ADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp TTCCS-EEEEEEETTTS----CH-HHHHHHHGGGEEEEEEEEEE
T ss_pred ccCCC-CCEEEEcCChh----hh-HHHHHHHHHhcCCCeEEEEE
Confidence 43345 99999874321 22 24445699999999 55553
No 179
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.04 E-value=7.6e-10 Score=120.69 Aligned_cols=107 Identities=19% Similarity=0.218 Sum_probs=83.2
Q ss_pred HHHHHHhh-cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 684 EYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 684 e~Ild~L~-~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
..+++.+. ..+..+|||||||+|.++..+++.++ ..+++++|+ +.+++.|++ .+++++.
T Consensus 198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~------------------~~~v~~~ 257 (372)
T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVIENAPP------------------LSGIEHV 257 (372)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------------------CTTEEEE
T ss_pred HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeCh-HHHHHhhhh------------------cCCCEEE
Confidence 34444443 34568999999999999999998762 368999999 888876632 2469999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 763 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 763 ~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
.+|+.+ +.+. ||+|++..++||++++....+.+++.++|+|| .++|..
T Consensus 258 ~~d~~~-~~~~--~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 258 GGDMFA-SVPQ--GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp ECCTTT-CCCC--EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCccc-CCCC--CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999987 4433 99999999999999665556667799999999 666664
No 180
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.03 E-value=5.6e-10 Score=117.70 Aligned_cols=119 Identities=19% Similarity=0.160 Sum_probs=85.7
Q ss_pred ccCCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCC
Q 002345 673 LFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP 752 (933)
Q Consensus 673 ~F~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~P 752 (933)
.|.+....+|. .+.+.+ .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++..
T Consensus 107 ~f~~~~~~~~~-~l~~~~--~~~~~VLDlgcG~G~~~~~la~~~~--~~V~~vD~s~~~~~~a~~n~~~----------- 170 (278)
T 2frn_A 107 MFSPANVKERV-RMAKVA--KPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHL----------- 170 (278)
T ss_dssp CCCGGGHHHHH-HHHHHC--CTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHH-----------
T ss_pred eEcCCcHHHHH-HHHHhC--CCCCEEEEecccCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHH-----------
Confidence 34444444443 333443 3578999999999999999999873 3799999999999999988652
Q ss_pred CCCC-ccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 753 CTDV-KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 753 r~~~-~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.+. .+++++++|+.++.. ...||+|++.... ... .+.+.+.++|+|| .+++.+..
T Consensus 171 -n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p~-----~~~-~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 171 -NKVEDRMSAYNMDNRDFPG-ENIADRILMGYVV-----RTH-EFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp -TTCTTTEEEECSCTTTCCC-CSCEEEEEECCCS-----SGG-GGHHHHHHHEEEEEEEEEEEEE
T ss_pred -cCCCceEEEEECCHHHhcc-cCCccEEEECCch-----hHH-HHHHHHHHHCCCCeEEEEEEee
Confidence 122 359999999998876 6789999985331 222 3334589999999 56655543
No 181
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.03 E-value=4.2e-10 Score=117.08 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++.. .+.. +++.++|+.+. .+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g---~~v~gvDi~~~~v~~a~~n~~~------------~~~~-v~~~~~d~~~~-~~ 181 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDPMVLPQAEANAKR------------NGVR-PRFLEGSLEAA-LP 181 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHH------------TTCC-CEEEESCHHHH-GG
T ss_pred CCCCEEEEecCCCcHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHH------------cCCc-EEEEECChhhc-Cc
Confidence 467899999999999999999987 4999999999999999987652 2223 89999998763 33
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
...||+|+++...+++ ..+.+.+.++|+|| .++++.+
T Consensus 182 ~~~fD~Vv~n~~~~~~-----~~~l~~~~~~LkpgG~lils~~ 219 (254)
T 2nxc_A 182 FGPFDLLVANLYAELH-----AALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp GCCEEEEEEECCHHHH-----HHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCEEEECCcHHHH-----HHHHHHHHHHcCCCCEEEEEee
Confidence 5689999998665543 34455699999999 6666543
No 182
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.02 E-value=8.9e-10 Score=118.04 Aligned_cols=113 Identities=16% Similarity=0.116 Sum_probs=80.1
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~- 771 (933)
..+.+|||||||+|.++..+++.. +..+|+|||+|+.+++.|++++..... ....++++++.+|+.+...
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~--------~~~~~~v~~~~~D~~~~~~~ 164 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISR--------SLADPRATVRVGDGLAFVRQ 164 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG--------GGGCTTEEEEESCHHHHHHS
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhc--------ccCCCcEEEEECcHHHHHHh
Confidence 466899999999999999999874 247999999999999999987632111 0123579999999987654
Q ss_pred -CCCCccEEEEccccccCChhHH--HHHHHHHHHccCCC-EEEEEec
Q 002345 772 -RLHGFDIGTCLEVIEHMEEDEA--SQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 772 -~~~sFDlVVc~eVLEHLpdD~l--~aL~eeI~rlLKPG-~LIITTP 814 (933)
..+.||+|++....++.+...+ ..+.+.+.++|+|| .+++...
T Consensus 165 ~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 165 TPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp SCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 3678999999766655442221 34455699999999 5555544
No 183
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.02 E-value=3.2e-10 Score=118.22 Aligned_cols=100 Identities=16% Similarity=0.163 Sum_probs=78.0
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+|||||||+|..+..|+... +..+|+|+|+|+.+++.|++++.. .+..+++++++|+++++..
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~------------~~l~~v~~~~~d~~~~~~~ 145 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEV------------LGLKGARALWGRAEVLARE 145 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHH------------HTCSSEEEEECCHHHHTTS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH------------hCCCceEEEECcHHHhhcc
Confidence 357899999999999999888763 237999999999999999988653 2344799999999987653
Q ss_pred ---CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002345 773 ---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 811 (933)
Q Consensus 773 ---~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LII 811 (933)
.+.||+|++..+ . + ...+.+.+.++|+|| .+++
T Consensus 146 ~~~~~~fD~I~s~a~----~-~-~~~ll~~~~~~LkpgG~l~~ 182 (249)
T 3g89_A 146 AGHREAYARAVARAV----A-P-LCVLSELLLPFLEVGGAAVA 182 (249)
T ss_dssp TTTTTCEEEEEEESS----C-C-HHHHHHHHGGGEEEEEEEEE
T ss_pred cccCCCceEEEECCc----C-C-HHHHHHHHHHHcCCCeEEEE
Confidence 378999999754 2 2 234556699999999 4444
No 184
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=99.02 E-value=2e-09 Score=108.07 Aligned_cols=112 Identities=16% Similarity=0.042 Sum_probs=80.4
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
++...+...++.+|||||||+|..+..+++..+...+|+|+|+++.+++.|++++... +...+++++++
T Consensus 60 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------g~~~~i~~~~~ 128 (229)
T 2avd_A 60 LLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA-----------EAEHKIDLRLK 128 (229)
T ss_dssp HHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT-----------TCTTTEEEEES
T ss_pred HHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-----------CCCCeEEEEEc
Confidence 4444444557889999999999999999986322379999999999999999887521 12257999999
Q ss_pred CccccCC--C--C--CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 765 SITVFDS--R--L--HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 765 DaedLp~--~--~--~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
|+.+... . . ..||+|++..... .. ..+.+.+.++|+|| .+++.
T Consensus 129 d~~~~~~~~~~~~~~~~~D~v~~d~~~~----~~-~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 129 PALETLDELLAAGEAGTFDVAVVDADKE----NC-SAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp CHHHHHHHHHHTTCTTCEEEEEECSCST----TH-HHHHHHHHHHEEEEEEEEEE
T ss_pred CHHHHHHHHHhcCCCCCccEEEECCCHH----HH-HHHHHHHHHHcCCCeEEEEE
Confidence 9865421 1 1 6899999965421 22 23445699999999 55553
No 185
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.02 E-value=6e-10 Score=119.69 Aligned_cols=129 Identities=12% Similarity=0.074 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhc--ccccCCCCCCC
Q 002345 679 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK--KLDAAVPCTDV 756 (933)
Q Consensus 679 y~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~--~~~~~~Pr~~~ 756 (933)
+......++..+...++.+|||+|||+|.++..|++..++..+|+|+|+++.+++.|++++...... .+.. ....
T Consensus 90 ~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~---~~~~ 166 (336)
T 2b25_A 90 FPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHV---EEWP 166 (336)
T ss_dssp CHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCS---SCCC
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccc---cccC
Confidence 3444555667777778899999999999999999986323468999999999999999887532100 0000 0113
Q ss_pred ccEEEEEcCcccc--CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 757 KSAVLFDGSITVF--DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 757 ~nVefi~GDaedL--p~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
.++++.++|+.+. +...+.||+|++...-.+ .. .+.+.++|+|| .+++.+++.+
T Consensus 167 ~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~------~~-l~~~~~~LkpgG~lv~~~~~~~ 223 (336)
T 2b25_A 167 DNVDFIHKDISGATEDIKSLTFDAVALDMLNPH------VT-LPVFYPHLKHGGVCAVYVVNIT 223 (336)
T ss_dssp CCEEEEESCTTCCC-------EEEEEECSSSTT------TT-HHHHGGGEEEEEEEEEEESSHH
T ss_pred CceEEEECChHHcccccCCCCeeEEEECCCCHH------HH-HHHHHHhcCCCcEEEEEeCCHH
Confidence 5799999999886 344568999998532211 13 34699999999 7788888653
No 186
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.02 E-value=1.2e-09 Score=114.39 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=81.0
Q ss_pred hhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 690 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 690 L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
+...++.+|||+|||+|.++..|++.-++..+|+|+|++++|++.+++++. ...++..+.+|..+.
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~--------------~~~ni~~V~~d~~~p 138 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR--------------DRRNIFPILGDARFP 138 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHST--------------TCTTEEEEESCTTCG
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhH--------------hhcCeeEEEEeccCc
Confidence 345688999999999999999999864455799999999999999987643 235788888888653
Q ss_pred ---CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 770 ---DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 770 ---p~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+.....+|+|++. +.|.. +.. .+.+++.++|||| .++|...
T Consensus 139 ~~~~~~~~~vDvVf~d--~~~~~-~~~-~~l~~~~r~LKpGG~lvI~ik 183 (233)
T 4df3_A 139 EKYRHLVEGVDGLYAD--VAQPE-QAA-IVVRNARFFLRDGGYMLMAIK 183 (233)
T ss_dssp GGGTTTCCCEEEEEEC--CCCTT-HHH-HHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccceEEEEEEe--ccCCh-hHH-HHHHHHHHhccCCCEEEEEEe
Confidence 3456789999863 44443 333 4445699999999 6666654
No 187
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.01 E-value=1.2e-09 Score=114.14 Aligned_cols=120 Identities=12% Similarity=0.060 Sum_probs=84.8
Q ss_pred chHHHHHHHHHHHhh---cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002345 677 PLSKQRVEYALQHIK---ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 753 (933)
Q Consensus 677 PLy~qRve~Ild~L~---~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr 753 (933)
|........++..+. ..++.+|||+|||+|.++..+++..++-.+|+|+|+|+.|++...+....
T Consensus 56 ~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~------------ 123 (232)
T 3id6_C 56 AFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR------------ 123 (232)
T ss_dssp TTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH------------
T ss_pred hHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------------
Confidence 344444444555544 55789999999999999999887532336999999999997655443321
Q ss_pred CCCccEEEEEcCccccCC---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 754 TDVKSAVLFDGSITVFDS---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 754 ~~~~nVefi~GDaedLp~---~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
..++.++++|+..... ....||+|++.... + ++...+.+.+.++|||| .++++..
T Consensus 124 --r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 124 --RPNIFPLLADARFPQSYKSVVENVDVLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp --CTTEEEEECCTTCGGGTTTTCCCEEEEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred --cCCeEEEEcccccchhhhccccceEEEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 1479999999986532 24689999998653 3 55566666677799999 7777653
No 188
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=99.01 E-value=9.2e-10 Score=116.49 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=86.6
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
..+.+|||||||.|-++..+. +. .+++|+|||+.|++.+++.+.. ...+..+.++|+...+.+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~--~~y~a~DId~~~i~~ar~~~~~-------------~g~~~~~~v~D~~~~~~~ 166 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GI--ASVWGCDIHQGLGDVITPFARE-------------KDWDFTFALQDVLCAPPA 166 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TC--SEEEEEESBHHHHHHHHHHHHH-------------TTCEEEEEECCTTTSCCC
T ss_pred CCCCeEEEecCCccHHHHHhc--cC--CeEEEEeCCHHHHHHHHHHHHh-------------cCCCceEEEeecccCCCC
Confidence 467899999999999999877 32 7999999999999999987642 125789999999877654
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCC
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 816 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~ 816 (933)
+.||+|+++-++||++..+..... .+...|+++.++|+.|-.
T Consensus 167 -~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfPtk 208 (253)
T 3frh_A 167 -EAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFPTR 208 (253)
T ss_dssp -CBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEECC
T ss_pred -CCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcChH
Confidence 489999999999999855555555 488899999999999943
No 189
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=99.01 E-value=1.4e-09 Score=117.62 Aligned_cols=100 Identities=10% Similarity=0.096 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.+..+|||||||+|.++..+++..+ ..+++|+|+ +.+++.|++ .+++++..+|+.+ +.+
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~~p 245 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVVENLSG------------------SNNLTYVGGDMFT-SIP 245 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------------------BTTEEEEECCTTT-CCC
T ss_pred ccCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeC-HHHHhhccc------------------CCCcEEEeccccC-CCC
Confidence 3568999999999999999997642 368999999 999877732 1359999999976 333
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCC---C-EEEEEecC
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRP---R-ILIVSTPN 815 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKP---G-~LIITTPN 815 (933)
.||+|++..++||++++....+.+++.++|+| | .++|..+.
T Consensus 246 --~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 290 (352)
T 1fp2_A 246 --NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV 290 (352)
T ss_dssp --CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred --CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence 39999999999999966555666779999999 8 77776553
No 190
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.00 E-value=1.3e-09 Score=123.44 Aligned_cols=117 Identities=13% Similarity=0.045 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHH-------HHHHhhhhhcccccCCC
Q 002345 680 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRA-------AKIIHSKLSKKLDAAVP 752 (933)
Q Consensus 680 ~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~A-------rkrL~a~ls~~~~~~~P 752 (933)
...+..+++.+...++.+|||||||+|.++..+++..+ ..+|+|||+++.+++.| ++++..
T Consensus 228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~----------- 295 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKL----------- 295 (433)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHH-----------
Confidence 34445566777767889999999999999999998532 25899999999999998 555431
Q ss_pred CCC--CccEEEEEcCcccc--CC--CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 753 CTD--VKSAVLFDGSITVF--DS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 753 r~~--~~nVefi~GDaedL--p~--~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
.+ ..+++++++|.... ++ ....||+|+++.++ +. ++....| +++.+.|||| .+++.
T Consensus 296 -~Gl~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~-~d~~~~L-~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 296 -YGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL-FD-EDLNKKV-EKILQTAKVGCKIISL 358 (433)
T ss_dssp -TTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT-CC-HHHHHHH-HHHHTTCCTTCEEEES
T ss_pred -cCCCCCceEEEEcCccccccccccccCCCCEEEEeCcc-cc-ccHHHHH-HHHHHhCCCCeEEEEe
Confidence 23 35899999865421 11 24689999998776 33 3444555 4699999999 55554
No 191
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.99 E-value=1.2e-09 Score=117.80 Aligned_cols=106 Identities=11% Similarity=0.068 Sum_probs=73.8
Q ss_pred HHHHHHHHhhcC-CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 682 RVEYALQHIKES-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 682 Rve~Ild~L~~~-~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
.+..+++.+... .+.+|||||||+|.++..|++.+. .+|+|||+|+.||+.+.++ .+++.
T Consensus 72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~-----------------~~rv~ 132 (291)
T 3hp7_A 72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQ-----------------DDRVR 132 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHT-----------------CTTEE
T ss_pred HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHh-----------------Ccccc
Confidence 444455555443 567999999999999999998863 6999999999999986432 11232
Q ss_pred E-EEcCccccCC---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002345 761 L-FDGSITVFDS---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 811 (933)
Q Consensus 761 f-i~GDaedLp~---~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LII 811 (933)
. ...++..++. +...||+|+|..+++++. .+..++.++|+|| .+++
T Consensus 133 ~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~sl~-----~vL~e~~rvLkpGG~lv~ 183 (291)
T 3hp7_A 133 SMEQYNFRYAEPVDFTEGLPSFASIDVSFISLN-----LILPALAKILVDGGQVVA 183 (291)
T ss_dssp EECSCCGGGCCGGGCTTCCCSEEEECCSSSCGG-----GTHHHHHHHSCTTCEEEE
T ss_pred eecccCceecchhhCCCCCCCEEEEEeeHhhHH-----HHHHHHHHHcCcCCEEEE
Confidence 2 2234443332 234599999998988874 3334699999999 4444
No 192
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=98.99 E-value=2.5e-09 Score=117.10 Aligned_cols=107 Identities=15% Similarity=0.155 Sum_probs=83.7
Q ss_pred HHHHHhh-cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 685 YALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 685 ~Ild~L~-~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
.+++.+. ..+..+|||||||+|.++..+++.. +..+++++|+ +.+++.|++ .+++++..
T Consensus 191 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~ 250 (364)
T 3p9c_A 191 KLLELYHGFEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQ------------------FPGVTHVG 250 (364)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------------------CTTEEEEE
T ss_pred HHHHhcccccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhh------------------cCCeEEEe
Confidence 3444444 3456899999999999999998765 2368999999 888776631 24799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+|+.+ +.+. . |+|++..++||++++....+.++++++|+|| .++|...
T Consensus 251 ~D~~~-~~p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 251 GDMFK-EVPS-G-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp CCTTT-CCCC-C-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CCcCC-CCCC-C-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99987 5543 3 9999999999999776666677899999999 7777554
No 193
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.98 E-value=2.5e-09 Score=112.76 Aligned_cols=119 Identities=11% Similarity=0.057 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-cc
Q 002345 680 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KS 758 (933)
Q Consensus 680 ~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~-~n 758 (933)
..|++.+.+.+. ++.+|||||||+|.++..|++.+ +..+|+|+|+++.+++.|++++.. .+. .+
T Consensus 9 s~RL~~i~~~v~--~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~------------~gl~~~ 73 (244)
T 3gnl_A 9 SKRLEKVASYIT--KNERIADIGSDHAYLPCFAVKNQ-TASFAIAGEVVDGPFQSAQKQVRS------------SGLTEQ 73 (244)
T ss_dssp CHHHHHHHTTCC--SSEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHH------------TTCTTT
T ss_pred hHHHHHHHHhCC--CCCEEEEECCccHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH------------cCCCce
Confidence 357777777765 56899999999999999999986 346899999999999999998763 233 36
Q ss_pred EEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002345 759 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 817 (933)
Q Consensus 759 Vefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~e 817 (933)
+++.++|+.+...+...||+|++.... .+....+.+.....|+++..+|..|+..
T Consensus 74 I~v~~gD~l~~~~~~~~~D~IviagmG----g~lI~~IL~~~~~~L~~~~~lIlq~~~~ 128 (244)
T 3gnl_A 74 IDVRKGNGLAVIEKKDAIDTIVIAGMG----GTLIRTILEEGAAKLAGVTKLILQPNIA 128 (244)
T ss_dssp EEEEECSGGGGCCGGGCCCEEEEEEEC----HHHHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred EEEEecchhhccCccccccEEEEeCCc----hHHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 999999998765544469999875432 2334445556788899884455556543
No 194
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.98 E-value=1.2e-09 Score=121.69 Aligned_cols=106 Identities=13% Similarity=0.077 Sum_probs=79.5
Q ss_pred hcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 691 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 691 ~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
...++++|||||||+|.++..+++.|+ .+|+|||.|+ |++.|++.+.. .+...+|+++++++++++
T Consensus 80 ~~~~~k~VLDvG~GtGiLs~~Aa~aGA--~~V~ave~s~-~~~~a~~~~~~-----------n~~~~~i~~i~~~~~~~~ 145 (376)
T 4hc4_A 80 AALRGKTVLDVGAGTGILSIFCAQAGA--RRVYAVEASA-IWQQAREVVRF-----------NGLEDRVHVLPGPVETVE 145 (376)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECST-THHHHHHHHHH-----------TTCTTTEEEEESCTTTCC
T ss_pred HhcCCCEEEEeCCCccHHHHHHHHhCC--CEEEEEeChH-HHHHHHHHHHH-----------cCCCceEEEEeeeeeeec
Confidence 345788999999999999999999884 7899999996 88999877653 123357999999999987
Q ss_pred CCCCCccEEEEccccccCC-hhHHHHHHHHHHHccCCCEEEE
Q 002345 771 SRLHGFDIGTCLEVIEHME-EDEASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLp-dD~l~aL~eeI~rlLKPG~LII 811 (933)
.+ ..||+|++-..-..+. +..+..+.....++|+||+++|
T Consensus 146 lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 146 LP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp CS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred CC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceEC
Confidence 65 6899999844322222 1234455555779999995555
No 195
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.98 E-value=3.5e-09 Score=110.78 Aligned_cols=120 Identities=13% Similarity=0.021 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002345 680 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759 (933)
Q Consensus 680 ~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV 759 (933)
..|++.+.+.+. ++.+|||||||+|.+...|++.+ +..+|+|+|+++.+++.|++++... +...++
T Consensus 9 s~RL~~i~~~v~--~g~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~~~al~~A~~N~~~~-----------gl~~~I 74 (230)
T 3lec_A 9 SKRLQKVANYVP--KGARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVVNGPYQSALKNVSEH-----------GLTSKI 74 (230)
T ss_dssp CHHHHHHHTTSC--TTEEEEEETCSTTHHHHHHHHTT-CEEEEEEEESSHHHHHHHHHHHHHT-----------TCTTTE
T ss_pred HHHHHHHHHhCC--CCCEEEEECCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcE
Confidence 357777777765 56899999999999999999986 3468999999999999999987631 122469
Q ss_pred EEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002345 760 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 817 (933)
Q Consensus 760 efi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~e 817 (933)
++.++|+.+...+...||+|+..... .+....+.+.....|+++..+|..|+..
T Consensus 75 ~~~~gD~l~~~~~~~~~D~IviaGmG----g~lI~~IL~~~~~~l~~~~~lIlqp~~~ 128 (230)
T 3lec_A 75 DVRLANGLSAFEEADNIDTITICGMG----GRLIADILNNDIDKLQHVKTLVLQPNNR 128 (230)
T ss_dssp EEEECSGGGGCCGGGCCCEEEEEEEC----HHHHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred EEEECchhhccccccccCEEEEeCCc----hHHHHHHHHHHHHHhCcCCEEEEECCCC
Confidence 99999998866544479998865443 2334445556788899885555556643
No 196
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=98.97 E-value=7.1e-10 Score=113.65 Aligned_cols=105 Identities=10% Similarity=0.022 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEEEEEcCcccc---
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDGSITVF--- 769 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~-~nVefi~GDaedL--- 769 (933)
++.+|||+|||+|.++..+++.. +..+|+|+|+|+.|++.|++++.. .+. .+++++++|+.+.
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~------------~~~~~~v~~~~~d~~~~~~~ 131 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQ------------NNLSDLIKVVKVPQKTLLMD 131 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHH------------TTCTTTEEEEECCTTCSSTT
T ss_pred CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHH------------cCCCccEEEEEcchhhhhhh
Confidence 56799999999999998888652 116899999999999999988752 122 3599999998762
Q ss_pred CCC---CCCccEEEEccccccCCh-------------hHHHHHHHHHHHccCCC-EEEE
Q 002345 770 DSR---LHGFDIGTCLEVIEHMEE-------------DEASQFGNIVLSSFRPR-ILIV 811 (933)
Q Consensus 770 p~~---~~sFDlVVc~eVLEHLpd-------------D~l~aL~eeI~rlLKPG-~LII 811 (933)
+.. +..||+|+++-..++... .+...+...+.++|||| .+.+
T Consensus 132 ~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~ 190 (254)
T 2h00_A 132 ALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF 190 (254)
T ss_dssp TSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred hhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence 233 258999999865544330 11223344588899998 4443
No 197
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=98.96 E-value=9.6e-10 Score=117.58 Aligned_cols=117 Identities=15% Similarity=0.178 Sum_probs=92.5
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
+..+.+.+ ..+.+|||||||.|-++..++... +..+|+|+|+++.|++.+++++.. .+ .+..+.
T Consensus 123 Y~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~------------~g-~~~~~~ 186 (281)
T 3lcv_B 123 YRELFRHL--PRPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTR------------LN-VPHRTN 186 (281)
T ss_dssp HHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHH------------TT-CCEEEE
T ss_pred HHHHHhcc--CCCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHh------------cC-CCceEE
Confidence 44444444 347899999999999998888764 358999999999999999988752 22 347889
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002345 763 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 817 (933)
Q Consensus 763 ~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~e 817 (933)
+.|...-+ ....||+|++.-+++|+++.......+ ++..|+|+.++|+-|...
T Consensus 187 v~D~~~~~-p~~~~DvaL~lkti~~Le~q~kg~g~~-ll~aL~~~~vvVSfp~ks 239 (281)
T 3lcv_B 187 VADLLEDR-LDEPADVTLLLKTLPCLETQQRGSGWE-VIDIVNSPNIVVTFPTKS 239 (281)
T ss_dssp ECCTTTSC-CCSCCSEEEETTCHHHHHHHSTTHHHH-HHHHSSCSEEEEEEECC-
T ss_pred EeeecccC-CCCCcchHHHHHHHHHhhhhhhHHHHH-HHHHhCCCCEEEeccchh
Confidence 99987655 456899999999999998555545554 999999999999999743
No 198
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=98.95 E-value=1.6e-09 Score=112.46 Aligned_cols=112 Identities=12% Similarity=0.070 Sum_probs=80.7
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
++...+...++.+|||||||+|..+..|++..++..+|+++|+++.+++.|++++... +...+++++.+
T Consensus 70 ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-----------g~~~~i~~~~g 138 (247)
T 1sui_A 70 FLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA-----------GVDHKIDFREG 138 (247)
T ss_dssp HHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT-----------TCGGGEEEEES
T ss_pred HHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCCeEEEEC
Confidence 3333344456789999999999999999876322369999999999999999887531 12347999999
Q ss_pred Ccccc-CCC------CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 765 SITVF-DSR------LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 765 DaedL-p~~------~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
|+.+. +.. .+.||+|++..... +. ..+.+.+.++|+|| .+++.
T Consensus 139 da~~~l~~l~~~~~~~~~fD~V~~d~~~~----~~-~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 139 PALPVLDEMIKDEKNHGSYDFIFVDADKD----NY-LNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp CHHHHHHHHHHSGGGTTCBSEEEECSCST----TH-HHHHHHHHHHBCTTCCEEEE
T ss_pred CHHHHHHHHHhccCCCCCEEEEEEcCchH----HH-HHHHHHHHHhCCCCeEEEEe
Confidence 98764 211 46899999875422 22 24445699999999 55554
No 199
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.95 E-value=1.8e-09 Score=118.76 Aligned_cols=124 Identities=17% Similarity=0.132 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 678 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 678 Ly~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
+.......++... ..++.+|||+|||+|.++..++..+ ...+|+|+|+|+.|++.|++++... +...
T Consensus 202 l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~-----------gl~~ 268 (373)
T 3tm4_A 202 LKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAA-----------GVLD 268 (373)
T ss_dssp CCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHT-----------TCGG
T ss_pred ccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHc-----------CCCC
Confidence 3334444455555 5577899999999999999999987 2348999999999999999887521 1225
Q ss_pred cEEEEEcCccccCCCCCCccEEEEccccccCC------hhHHHHHHHHHHHccCCCEEEEEecC
Q 002345 758 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHME------EDEASQFGNIVLSSFRPRILIVSTPN 815 (933)
Q Consensus 758 nVefi~GDaedLp~~~~sFDlVVc~eVLEHLp------dD~l~aL~eeI~rlLKPG~LIITTPN 815 (933)
++++.++|+.+++.....||+|+++-...+-. .+....+.+.+.++| +|.+++.+++
T Consensus 269 ~i~~~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~~ 331 (373)
T 3tm4_A 269 KIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITTE 331 (373)
T ss_dssp GCEEEECCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEESC
T ss_pred ceEEEECChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEECC
Confidence 79999999999887778999999965432211 122245556688888 5544444444
No 200
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=98.95 E-value=6e-09 Score=108.61 Aligned_cols=117 Identities=11% Similarity=0.091 Sum_probs=86.3
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccE
Q 002345 681 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSA 759 (933)
Q Consensus 681 qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~-~nV 759 (933)
.|++.+.+.+. ++.+|||||||+|.++..+++.+ +..+|+|+|+++.+++.|++++.. .+. .++
T Consensus 4 ~RL~~l~~~v~--~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~------------~gl~~~i 68 (225)
T 3kr9_A 4 KRLELVASFVS--QGAILLDVGSDHAYLPIELVERG-QIKSAIAGEVVEGPYQSAVKNVEA------------HGLKEKI 68 (225)
T ss_dssp HHHHHHHTTSC--TTEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHH------------TTCTTTE
T ss_pred HHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH------------cCCCceE
Confidence 57777777765 56799999999999999999986 346899999999999999998763 233 369
Q ss_pred EEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCC
Q 002345 760 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 816 (933)
Q Consensus 760 efi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~ 816 (933)
++.++|+.+.-.....||+|+.... ..+....+.+.....|+|+..+|..|+.
T Consensus 69 ~~~~~d~l~~l~~~~~~D~IviaG~----Gg~~i~~Il~~~~~~L~~~~~lVlq~~~ 121 (225)
T 3kr9_A 69 QVRLANGLAAFEETDQVSVITIAGM----GGRLIARILEEGLGKLANVERLILQPNN 121 (225)
T ss_dssp EEEECSGGGGCCGGGCCCEEEEEEE----CHHHHHHHHHHTGGGCTTCCEEEEEESS
T ss_pred EEEECchhhhcccCcCCCEEEEcCC----ChHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 9999998643222226999887544 3233445556688899999444446664
No 201
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=98.94 E-value=3.1e-09 Score=110.12 Aligned_cols=108 Identities=11% Similarity=0.094 Sum_probs=69.1
Q ss_pred HHHHHHHHhhc-CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 682 RVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 682 Rve~Ild~L~~-~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
+++.+++.+.. ..+.+|||||||+|.++..|++.+. .+|+|||+|+.|++.|+++.. ++.
T Consensus 24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~ml~~a~~~~~-----------------~~~ 84 (232)
T 3opn_A 24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQLAWKIRSDE-----------------RVV 84 (232)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCCCCHHHHTCT-----------------TEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHHHHHHHHhCc-----------------ccc
Confidence 34445555543 3567999999999999999999862 599999999999999865321 111
Q ss_pred EE-EcCccccC---CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 761 LF-DGSITVFD---SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 761 fi-~GDaedLp---~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
.. ..++.... .....||.+.+..++.++. .+.+++.++|||| .+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l~-----~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 85 VMEQFNFRNAVLADFEQGRPSFTSIDVSFISLD-----LILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp EECSCCGGGCCGGGCCSCCCSEEEECCSSSCGG-----GTHHHHHHHSCTTCEEEEEE
T ss_pred ccccceEEEeCHhHcCcCCCCEEEEEEEhhhHH-----HHHHHHHHhccCCCEEEEEE
Confidence 11 11111111 1111356666666666662 3345699999999 555543
No 202
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.93 E-value=4.7e-09 Score=107.26 Aligned_cols=108 Identities=14% Similarity=0.087 Sum_probs=78.2
Q ss_pred hhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 690 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 690 L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
+...++.+|||||||+|..+..+++..++..+|+|+|+++.+++.|++++... +...+++++.+|+.+.
T Consensus 68 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----------g~~~~i~~~~~d~~~~ 136 (232)
T 3cbg_A 68 ISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA-----------GVAEKISLRLGPALAT 136 (232)
T ss_dssp HHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-----------TCGGGEEEEESCHHHH
T ss_pred HHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEEEcCHHHH
Confidence 33346789999999999999999986422369999999999999999876521 1224699999997542
Q ss_pred ----CCCC--CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 770 ----DSRL--HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 770 ----p~~~--~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
+... +.||+|++....+ +. ..+.+.+.++|+|| .+++..
T Consensus 137 l~~l~~~~~~~~fD~V~~d~~~~----~~-~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 137 LEQLTQGKPLPEFDLIFIDADKR----NY-PRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp HHHHHTSSSCCCEEEEEECSCGG----GH-HHHHHHHHHTEEEEEEEEEEC
T ss_pred HHHHHhcCCCCCcCEEEECCCHH----HH-HHHHHHHHHHcCCCeEEEEeC
Confidence 2222 6899999875522 22 23445699999999 555543
No 203
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=98.93 E-value=1.4e-09 Score=108.02 Aligned_cols=93 Identities=13% Similarity=0.212 Sum_probs=71.7
Q ss_pred HHHHhh-cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 686 ALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 686 Ild~L~-~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
+++.+. ..++.+|||||||+|.++..++ .+|+|+|+|+. ++.+.++
T Consensus 58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~---------------------------~~~~~~~ 104 (215)
T 2zfu_A 58 IARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL---------------------------DPRVTVC 104 (215)
T ss_dssp HHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS---------------------------STTEEES
T ss_pred HHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC---------------------------CceEEEe
Confidence 344443 2456899999999999998873 47999999986 1346788
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 765 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 765 DaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
|+.++++..+.||+|++..++|| + +....+ +++.++|+|| .+++.++
T Consensus 105 d~~~~~~~~~~fD~v~~~~~l~~-~-~~~~~l-~~~~~~L~~gG~l~i~~~ 152 (215)
T 2zfu_A 105 DMAQVPLEDESVDVAVFCLSLMG-T-NIRDFL-EEANRVLKPGGLLKVAEV 152 (215)
T ss_dssp CTTSCSCCTTCEEEEEEESCCCS-S-CHHHHH-HHHHHHEEEEEEEEEEEC
T ss_pred ccccCCCCCCCEeEEEEehhccc-c-CHHHHH-HHHHHhCCCCeEEEEEEc
Confidence 99888877889999999999975 3 554455 4599999999 6777654
No 204
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.93 E-value=1.7e-09 Score=113.63 Aligned_cols=116 Identities=14% Similarity=0.126 Sum_probs=83.9
Q ss_pred HHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc
Q 002345 687 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 766 (933)
Q Consensus 687 ld~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDa 766 (933)
...+...++.+|||+|||+|..+..|++......+|+|+|+++.+++.+++++.. .+..+++++++|+
T Consensus 76 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~------------~g~~~v~~~~~D~ 143 (274)
T 3ajd_A 76 PIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR------------MGVLNTIIINADM 143 (274)
T ss_dssp HHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHH------------TTCCSEEEEESCH
T ss_pred HHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHH------------hCCCcEEEEeCCh
Confidence 3445556788999999999999999987421226899999999999999988752 2445899999999
Q ss_pred cccCC----CCCCccEEEEc------ccccc-----------CChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 767 TVFDS----RLHGFDIGTCL------EVIEH-----------MEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 767 edLp~----~~~sFDlVVc~------eVLEH-----------LpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.+++. ....||+|++. .++.+ +...+. .+.+.+.++|||| .++++|..
T Consensus 144 ~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~-~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 144 RKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQK-ELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHH-HHHHHHHHHEEEEEEEEEEESC
T ss_pred HhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHH-HHHHHHHHhCCCCCEEEEEECC
Confidence 87654 25689999986 33332 111333 4445699999999 77777754
No 205
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=98.91 E-value=6.2e-09 Score=111.72 Aligned_cols=113 Identities=17% Similarity=0.132 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-C
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-S 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp-~ 771 (933)
..+.+|||||||+|.++..+++.. +..+|++||+|+.+++.|++++...... ....++++++.+|+.+.. .
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~V~~VDid~~vi~~ar~~~~~~~~~-------~~~~~rv~~~~~D~~~~l~~ 153 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAG-------SYDDPRFKLVIDDGVNFVNQ 153 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCT-TCCEEEEECSCTTHHHHHHHHCHHHHSS-------CTTCTTCCEECSCSCC---C
T ss_pred CCCCEEEEEeCChhHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHhhhhcccc-------cccCCceEEEEChHHHHHhh
Confidence 457899999999999999999875 3478999999999999999876532100 013458999999987743 3
Q ss_pred CCCCccEEEEccccccCChhHH--HHHHHHHHHccCCC-EEEEEe
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEA--SQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l--~aL~eeI~rlLKPG-~LIITT 813 (933)
..+.||+|++...-...+...+ ..|.+.+.++|+|| .+++.+
T Consensus 154 ~~~~fDvIi~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 198 (294)
T 3adn_A 154 TSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp CCCCEEEEEECC----------CCHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCccEEEECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEec
Confidence 4578999999654333222211 34556699999999 555543
No 206
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=98.91 E-value=3.2e-09 Score=115.07 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.+..+|||||||+|.++..+++..+ ..+++++|+ +.+++.|++ .+++++..+|+.+ +.+
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~~~ 250 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQ-PQVVGNLTG------------------NENLNFVGGDMFK-SIP 250 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEEC-HHHHSSCCC------------------CSSEEEEECCTTT-CCC
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEecc-HHHHhhccc------------------CCCcEEEeCccCC-CCC
Confidence 3568999999999999999998752 358999999 788866531 2359999999987 443
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCC---C-EEEEEec
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRP---R-ILIVSTP 814 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKP---G-~LIITTP 814 (933)
.||+|++..++||++++....+.+++.++|+| | .++|..+
T Consensus 251 --~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 251 --SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp --CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred --CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 59999999999999966555666779999999 8 6777554
No 207
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.90 E-value=1.7e-08 Score=111.62 Aligned_cols=105 Identities=14% Similarity=0.091 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-c-cEEEEEcCccccC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-K-SAVLFDGSITVFD 770 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~-~-nVefi~GDaedLp 770 (933)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++.. .+. . +++++++|+.+..
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~------------ngl~~~~v~~~~~D~~~~~ 284 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVEL------------NKLDLSKAEFVRDDVFKLL 284 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH------------TTCCGGGEEEEESCHHHHH
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHH------------cCCCccceEEEECCHHHHH
Confidence 4678999999999999999999862 6999999999999999988752 233 3 8999999998753
Q ss_pred CC----CCCccEEEEcc---------ccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 771 SR----LHGFDIGTCLE---------VIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 771 ~~----~~sFDlVVc~e---------VLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
.. ...||+|++.- +.++.. .....+ ..+.++|+|| .+++++
T Consensus 285 ~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~-~~~~~l-~~~~~~LkpgG~l~~~~ 339 (396)
T 3c0k_A 285 RTYRDRGEKFDVIVMDPPKFVENKSQLMGACR-GYKDIN-MLAIQLLNEGGILLTFS 339 (396)
T ss_dssp HHHHHTTCCEEEEEECCSSTTTCSSSSSCCCT-HHHHHH-HHHHHTEEEEEEEEEEE
T ss_pred HHHHhcCCCCCEEEECCCCCCCChhHHHHHHH-HHHHHH-HHHHHhcCCCcEEEEEe
Confidence 21 46899999962 222222 443444 4599999999 555554
No 208
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=98.90 E-value=6.4e-09 Score=102.11 Aligned_cols=101 Identities=17% Similarity=0.208 Sum_probs=74.0
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCC-CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTA-LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 770 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~-f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp- 770 (933)
.++.+|||+|||+|.++..+++..++ ..+|+|+|+|+.+ ..++++++++|+.+.+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------------------~~~~v~~~~~d~~~~~~ 77 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------------------PIPNVYFIQGEIGKDNM 77 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------------------CCTTCEEEECCTTTTSS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------------------CCCCceEEEccccchhh
Confidence 35679999999999999999876421 2689999999821 1236889999998765
Q ss_pred ------------------------CCCCCccEEEEccccccCCh---hHHH------HHHHHHHHccCCC-EEEEEecCC
Q 002345 771 ------------------------SRLHGFDIGTCLEVIEHMEE---DEAS------QFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 771 ------------------------~~~~sFDlVVc~eVLEHLpd---D~l~------aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+....||+|++..++++... +... .+.+.+.++|+|| .+++.+...
T Consensus 78 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 157 (201)
T 2plw_A 78 NNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG 157 (201)
T ss_dssp CCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred hhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence 34568999999988877531 2111 2445699999999 777666553
No 209
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.90 E-value=2.6e-09 Score=112.46 Aligned_cols=102 Identities=11% Similarity=0.068 Sum_probs=79.0
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+|||+|||+|.++..+++.++ ..+|+|+|+++.+++.|++++.. .+..++.++++|+.+. ..
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~------------n~l~~~~~~~~d~~~~-~~ 183 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKL------------NKLNNVIPILADNRDV-EL 183 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHH------------TTCSSEEEEESCGGGC-CC
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHH------------cCCCCEEEEECChHHc-Cc
Confidence 4678999999999999999998751 25999999999999999988752 3445789999999987 33
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
...||+|++.... ... .+.+.+.+.|+|| .+++++.
T Consensus 184 ~~~~D~Vi~d~p~-----~~~-~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 184 KDVADRVIMGYVH-----KTH-KFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp TTCEEEEEECCCS-----SGG-GGHHHHHHHEEEEEEEEEEEE
T ss_pred cCCceEEEECCcc-----cHH-HHHHHHHHHcCCCCEEEEEEc
Confidence 5689999987653 111 2334588999999 6666544
No 210
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.89 E-value=8e-09 Score=109.72 Aligned_cols=87 Identities=14% Similarity=0.205 Sum_probs=69.9
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
-.+.+++.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.+++++.. .....++++
T Consensus 16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~-----------~~~~~~v~~ 81 (285)
T 1zq9_A 16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQG-----------TPVASKLQV 81 (285)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT-----------STTGGGEEE
T ss_pred HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHh-----------cCCCCceEE
Confidence 34556667766678899999999999999999886 6999999999999999887641 111258999
Q ss_pred EEcCccccCCCCCCccEEEEccc
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEV 784 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eV 784 (933)
+++|+.+++.+ .||+|+++..
T Consensus 82 ~~~D~~~~~~~--~fD~vv~nlp 102 (285)
T 1zq9_A 82 LVGDVLKTDLP--FFDTCVANLP 102 (285)
T ss_dssp EESCTTTSCCC--CCSEEEEECC
T ss_pred EEcceecccch--hhcEEEEecC
Confidence 99999887654 7999999643
No 211
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=98.89 E-value=2.2e-09 Score=110.78 Aligned_cols=104 Identities=14% Similarity=0.171 Sum_probs=75.9
Q ss_pred HHhhcCCCCEEEEEcCCcChHHHHHhcC----CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 688 QHIKESCATTLVDFGCGSGSLLDSLLDY----PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 688 d~L~~~~g~rVLDIGCGtG~fL~~LAr~----g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
..+...++.+|||||||+|..+..|++. + +..+|+|||+|+.|++.|+. ...++++++
T Consensus 75 ~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~-~~~~V~gvD~s~~~l~~a~~-----------------~~~~v~~~~ 136 (236)
T 2bm8_A 75 DMLWELRPRTIVELGVYNGGSLAWFRDLTKIMG-IDCQVIGIDRDLSRCQIPAS-----------------DMENITLHQ 136 (236)
T ss_dssp HHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTT-CCCEEEEEESCCTTCCCCGG-----------------GCTTEEEEE
T ss_pred HHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcC-CCCEEEEEeCChHHHHHHhc-----------------cCCceEEEE
Confidence 3333345789999999999999999875 2 23799999999999988851 124799999
Q ss_pred cCcccc---CCCC-CCccEEEEccccccCChhHHHHHHHHHHH-ccCCC-EEEEEec
Q 002345 764 GSITVF---DSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLS-SFRPR-ILIVSTP 814 (933)
Q Consensus 764 GDaedL---p~~~-~sFDlVVc~eVLEHLpdD~l~aL~eeI~r-lLKPG-~LIITTP 814 (933)
+|+.+. +... ..||+|++... |. +....| +++.+ +|||| .+++...
T Consensus 137 gD~~~~~~l~~~~~~~fD~I~~d~~--~~--~~~~~l-~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 137 GDCSDLTTFEHLREMAHPLIFIDNA--HA--NTFNIM-KWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp CCSSCSGGGGGGSSSCSSEEEEESS--CS--SHHHHH-HHHHHHTCCTTCEEEECSC
T ss_pred CcchhHHHHHhhccCCCCEEEECCc--hH--hHHHHH-HHHHHhhCCCCCEEEEEeC
Confidence 999884 4333 37999998665 53 333344 45887 99999 6666543
No 212
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.88 E-value=1.3e-08 Score=112.72 Aligned_cols=108 Identities=10% Similarity=0.040 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc--cEEEEEcCccccC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK--SAVLFDGSITVFD 770 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~--nVefi~GDaedLp 770 (933)
.++.+|||+|||+|.++..+++.+. .+|+|||+|+.+++.|++++.. .+.. +++++++|+.+..
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~------------n~~~~~~v~~~~~D~~~~l 276 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEA------------NHLDMANHQLVVMDVFDYF 276 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHH------------TTCCCTTEEEEESCHHHHH
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHH------------cCCCccceEEEECCHHHHH
Confidence 4678999999999999999998762 5899999999999999988752 2333 7999999997632
Q ss_pred C----CCCCccEEEEcccc-----ccCCh--hHHHHHHHHHHHccCCC-EEEEEec
Q 002345 771 S----RLHGFDIGTCLEVI-----EHMEE--DEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 771 ~----~~~sFDlVVc~eVL-----EHLpd--D~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
. ....||+|++.--. .++.. .....+.+.+.++|+|| .+++++.
T Consensus 277 ~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 277 KYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp HHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred HHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 1 24589999984322 23331 11223445578999999 5555543
No 213
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.88 E-value=6.8e-09 Score=110.17 Aligned_cols=113 Identities=12% Similarity=0.193 Sum_probs=80.9
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL-p~ 771 (933)
..+.+|||||||+|.++..+++.. +..+|++||+++.+++.|++++..... ....++++++.+|+.+. ..
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~--------~~~~~~v~~~~~D~~~~l~~ 147 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISC--------GYEDKRVNVFIEDASKFLEN 147 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSG--------GGGSTTEEEEESCHHHHHHH
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhcc--------ccCCCcEEEEECChHHHHHh
Confidence 456899999999999999999875 347999999999999999987542100 00145899999999764 22
Q ss_pred CCCCccEEEEccccccCChhHH--HHHHHHHHHccCCC-EEEEEec
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEA--SQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l--~aL~eeI~rlLKPG-~LIITTP 814 (933)
..+.||+|++....++.+...+ ..+.+.+.++|+|| .+++.+.
T Consensus 148 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 148 VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp CCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 3578999999654333222221 34556699999999 5555543
No 214
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.87 E-value=4.6e-09 Score=108.04 Aligned_cols=112 Identities=12% Similarity=0.069 Sum_probs=80.0
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 764 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G 764 (933)
++...+...++.+|||||||+|..+..+++..++..+|+++|+++.+++.|++++... +...+++++.+
T Consensus 61 ~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----------g~~~~i~~~~g 129 (237)
T 3c3y_A 61 LMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA-----------GVEHKINFIES 129 (237)
T ss_dssp HHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT-----------TCGGGEEEEES
T ss_pred HHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEEEc
Confidence 3333344456789999999999999999875322379999999999999999887531 12347999999
Q ss_pred Ccccc-CC------CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 765 SITVF-DS------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 765 DaedL-p~------~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
|+.+. +. ..+.||+|++...-. .. ..+.+.+.++|+|| .+++.
T Consensus 130 da~~~l~~l~~~~~~~~~fD~I~~d~~~~----~~-~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 130 DAMLALDNLLQGQESEGSYDFGFVDADKP----NY-IKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp CHHHHHHHHHHSTTCTTCEEEEEECSCGG----GH-HHHHHHHHHHEEEEEEEEEE
T ss_pred CHHHHHHHHHhccCCCCCcCEEEECCchH----HH-HHHHHHHHHhcCCCeEEEEe
Confidence 98764 21 146899999864322 22 34445699999999 44443
No 215
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=98.87 E-value=8.1e-10 Score=106.95 Aligned_cols=90 Identities=14% Similarity=0.060 Sum_probs=71.8
Q ss_pred hcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 691 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 691 ~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
...++.+|||||||. +++|+|+.|++.|+++.. .++++.++|+.+++
T Consensus 9 g~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~----------------~~~~~~~~d~~~~~ 55 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTG----------------NEGRVSVENIKQLL 55 (176)
T ss_dssp TCCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTT----------------TTSEEEEEEGGGGG
T ss_pred CCCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcc----------------cCcEEEEechhcCc
Confidence 345788999999985 239999999999987642 14899999999988
Q ss_pred C---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 771 S---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 771 ~---~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
+ .+++||+|+|..++||+.++....+ ++++++|||| .+++..|
T Consensus 56 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~l-~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 56 QSAHKESSFDIILSGLVPGSTTLHSAEIL-AEIARILRPGGCLFLKEP 102 (176)
T ss_dssp GGCCCSSCEEEEEECCSTTCCCCCCHHHH-HHHHHHEEEEEEEEEEEE
T ss_pred cccCCCCCEeEEEECChhhhcccCHHHHH-HHHHHHCCCCEEEEEEcc
Confidence 7 6789999999999999932444555 4699999999 7777555
No 216
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.86 E-value=7.7e-09 Score=111.26 Aligned_cols=113 Identities=12% Similarity=0.201 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc-cCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-FDS 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaed-Lp~ 771 (933)
..+.+|||||||+|.++..++++. +..+|++||+|+.+++.|++++...... ...++++++.+|+.+ ++.
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~--------~~~~rv~v~~~Da~~~l~~ 164 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIG--------YSSSKLTLHVGDGFEFMKQ 164 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGG--------GGCTTEEEEESCHHHHHHT
T ss_pred CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcc--------cCCCcEEEEECcHHHHHhh
Confidence 456899999999999999999875 3479999999999999999876421100 013579999999876 333
Q ss_pred CCCCccEEEEccccccCChhH--HHHHHHHHHHccCCC-EEEEEec
Q 002345 772 RLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~--l~aL~eeI~rlLKPG-~LIITTP 814 (933)
..+.||+|++....+..+... ...+.+.+.++|+|| .+++.+.
T Consensus 165 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 165 NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp CSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 457899999965432221111 123455699999999 5555543
No 217
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=98.85 E-value=8.8e-09 Score=112.36 Aligned_cols=106 Identities=7% Similarity=0.030 Sum_probs=76.9
Q ss_pred CEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--CCC
Q 002345 696 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--SRL 773 (933)
Q Consensus 696 ~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp--~~~ 773 (933)
.+|||||||+|.++..+++..+ ..+|++||+++.+++.|++++. ....++++++.+|+.++. ...
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~------------~~~~~rv~v~~~Da~~~l~~~~~ 157 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYP-QSRNTVVELDAELARLSREWFD------------IPRAPRVKIRVDDARMVAESFTP 157 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSC------------CCCTTTEEEEESCHHHHHHTCCT
T ss_pred CEEEEEECCcCHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhcc------------ccCCCceEEEECcHHHHHhhccC
Confidence 4999999999999999998321 2589999999999999988753 123468999999997752 235
Q ss_pred CCccEEEEccccccCChhHH--HHHHHHHHHccCCC-EEEEEec
Q 002345 774 HGFDIGTCLEVIEHMEEDEA--SQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 774 ~sFDlVVc~eVLEHLpdD~l--~aL~eeI~rlLKPG-~LIITTP 814 (933)
+.||+|++....++-.+..+ ..|.+.+.++|+|| .+++.+.
T Consensus 158 ~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 158 ASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 78999998643322111111 24455699999999 5555554
No 218
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.84 E-value=1.1e-08 Score=109.62 Aligned_cols=88 Identities=19% Similarity=0.314 Sum_probs=67.3
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
..+.+++.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|++++.. .+..++++
T Consensus 30 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~---~~v~~vDi~~~~~~~a~~~~~~------------~~~~~v~~ 94 (299)
T 2h1r_A 30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLY------------EGYNNLEV 94 (299)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTS---SEEEEECSCHHHHHHHHHHHHH------------TTCCCEEC
T ss_pred HHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHH------------cCCCceEE
Confidence 34556666666678899999999999999999986 6999999999999999887642 13357999
Q ss_pred EEcCccccCCCCCCccEEEEccccc
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEVIE 786 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eVLE 786 (933)
+++|+.+++. ..||+|+++...+
T Consensus 95 ~~~D~~~~~~--~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 95 YEGDAIKTVF--PKFDVCTANIPYK 117 (299)
T ss_dssp ----CCSSCC--CCCSEEEEECCGG
T ss_pred EECchhhCCc--ccCCEEEEcCCcc
Confidence 9999988765 4899999965443
No 219
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.84 E-value=7.1e-09 Score=111.65 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=80.9
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL-p~ 771 (933)
..+.+|||||||+|.++..++++. +..+|++||+|+.+++.|++++...... ....++++++.+|+.+. +.
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~-------~~~~~~v~~~~~D~~~~l~~ 147 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQG-------AFDDPRAVLVIDDARAYLER 147 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTT-------GGGCTTEEEEESCHHHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccc-------cccCCceEEEEchHHHHHHh
Confidence 466899999999999999999874 2479999999999999999876421000 00135899999999773 33
Q ss_pred CCCCccEEEEcccccc---CChhH--HHHHHHHHHHccCCC-EEEEEe
Q 002345 772 RLHGFDIGTCLEVIEH---MEEDE--ASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEH---LpdD~--l~aL~eeI~rlLKPG-~LIITT 813 (933)
..+.||+|++....++ -+... ...+.+.+.++|+|| .+++.+
T Consensus 148 ~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 148 TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 4678999999765543 11111 134455699999999 555543
No 220
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=98.84 E-value=1.9e-09 Score=121.17 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=82.4
Q ss_pred CchHHHHHHHHHHHhhcCCCCEEEEEcCC------cChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccccc
Q 002345 676 PPLSKQRVEYALQHIKESCATTLVDFGCG------SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA 749 (933)
Q Consensus 676 PPLy~qRve~Ild~L~~~~g~rVLDIGCG------tG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~ 749 (933)
...|...++.++..+. .++.+||||||| +|..+..+++...+..+|+|||+|+.|. .
T Consensus 199 ~h~y~~~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~--------- 261 (419)
T 3sso_A 199 LHWFTPHYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------V--------- 261 (419)
T ss_dssp SCBCHHHHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------G---------
T ss_pred cchHHHHHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------h---------
Confidence 3445555666665554 356899999999 6655555554311237999999999972 0
Q ss_pred CCCCCCCccEEEEEcCccccCCC------CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 750 AVPCTDVKSAVLFDGSITVFDSR------LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 750 ~~Pr~~~~nVefi~GDaedLp~~------~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
..++++|+++|+.++++. .++||+|++... ||+. +....|. +++++|||| .++|......
T Consensus 262 -----~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~~-d~~~aL~-el~rvLKPGGvlVi~Dl~ts 328 (419)
T 3sso_A 262 -----DELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HINA-HVRTSFA-ALFPHVRPGGLYVIEDMWTA 328 (419)
T ss_dssp -----CBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC-CCHH-HHHHHHH-HHGGGEEEEEEEEEECGGGG
T ss_pred -----cCCCcEEEEecccccchhhhhhcccCCccEEEECCc-ccch-hHHHHHH-HHHHhcCCCeEEEEEecccc
Confidence 124899999999998765 689999999754 5543 5555655 599999999 7777776543
No 221
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.84 E-value=6.5e-09 Score=110.02 Aligned_cols=113 Identities=15% Similarity=0.149 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL-p~ 771 (933)
..+.+|||||||+|.++..+++.. +..+|++||+++.+++.|++++..... ....++++++.+|+.+. ..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~--------~~~~~rv~v~~~D~~~~l~~ 144 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAG--------KLDDPRVDVQVDDGFMHIAK 144 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHT--------TTTSTTEEEEESCSHHHHHT
T ss_pred CCCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhcc--------ccCCCceEEEECcHHHHHhh
Confidence 357899999999999999999873 247999999999999999987642110 01245899999998763 33
Q ss_pred CCCCccEEEEccccccCChhH--HHHHHHHHHHccCCC-EEEEEec
Q 002345 772 RLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~--l~aL~eeI~rlLKPG-~LIITTP 814 (933)
..+.||+|++....++.+... ...+.+.+.++|+|| .+++.+.
T Consensus 145 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 145 SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 457899999965432222110 023445699999999 5555443
No 222
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.84 E-value=1.6e-08 Score=110.56 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=78.6
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-C-
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-D- 770 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL-p- 770 (933)
..+.+|||||||+|.++..|+++. +..+|++||+|+.+++.|++++...... ...++++++.+|+.+. +
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~g--------l~~~rv~~~~~D~~~~l~~ 189 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIG--------YEDPRVNLVIGDGVAFLKN 189 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGG--------GGSTTEEEEESCHHHHHHT
T ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccc--------cCCCcEEEEECCHHHHHHh
Confidence 456899999999999999999874 3479999999999999999876421100 0135799999998764 2
Q ss_pred CCCCCccEEEEccccccCChhH--HHHHHHHHHHccCCC-EEEEE
Q 002345 771 SRLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLpdD~--l~aL~eeI~rlLKPG-~LIIT 812 (933)
...+.||+|++...-.+-+.+. ...+.+.+.++|+|| .+++.
T Consensus 190 ~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 190 AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 2356899999964421111111 134455699999999 55544
No 223
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.83 E-value=1.6e-08 Score=113.49 Aligned_cols=113 Identities=16% Similarity=0.220 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002345 679 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 758 (933)
Q Consensus 679 y~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~n 758 (933)
.+..++.+++.+...++.+|||+|||+|.++..|++.+ .+|+|+|+|+.+++.|++++.. .+..+
T Consensus 271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~---~~V~gvD~s~~al~~A~~n~~~------------~~~~~ 335 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARL------------NGLQN 335 (433)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHH------------TTCCS
T ss_pred HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHH------------cCCCc
Confidence 44456667777766677899999999999999999985 7999999999999999987652 24458
Q ss_pred EEEEEcCcccc----CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002345 759 AVLFDGSITVF----DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 759 Vefi~GDaedL----p~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIIT 812 (933)
++|+++|+.+. +.....||+|++.---.-+ ..+.+.+. .++|+ .++++
T Consensus 336 v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~-----~~~~~~l~-~~~p~~ivyvs 388 (433)
T 1uwv_A 336 VTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-----AGVMQQII-KLEPIRIVYVS 388 (433)
T ss_dssp EEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC-----HHHHHHHH-HHCCSEEEEEE
T ss_pred eEEEECCHHHHhhhhhhhcCCCCEEEECCCCccH-----HHHHHHHH-hcCCCeEEEEE
Confidence 99999999873 2345689999984222111 12333233 36888 44443
No 224
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.82 E-value=1.6e-08 Score=113.95 Aligned_cols=119 Identities=14% Similarity=0.079 Sum_probs=88.4
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+...+...++.+|||+|||+|..+..|++..+...+|+|+|+++.+++.+++++.. .+..++.+.++|
T Consensus 251 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~------------~g~~~v~~~~~D 318 (450)
T 2yxl_A 251 ASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKR------------MGIKIVKPLVKD 318 (450)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH------------TTCCSEEEECSC
T ss_pred HHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH------------cCCCcEEEEEcC
Confidence 44455566788999999999999999987532225899999999999999988752 344579999999
Q ss_pred ccccC--CCCCCccEEEE------ccccccCChhH--------------HHHHHHHHHHccCCC-EEEEEecCC
Q 002345 766 ITVFD--SRLHGFDIGTC------LEVIEHMEEDE--------------ASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 766 aedLp--~~~~sFDlVVc------~eVLEHLpdD~--------------l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+.+++ +..+.||+|++ ..++++.++.. ...+.+.+.++|||| .++++|...
T Consensus 319 ~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 319 ARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp TTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred hhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 98876 33467999996 45666655211 134455699999998 777776543
No 225
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.81 E-value=2.7e-08 Score=109.76 Aligned_cols=108 Identities=15% Similarity=0.066 Sum_probs=79.6
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc-cEEEEEcCccccCC-
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK-SAVLFDGSITVFDS- 771 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~-nVefi~GDaedLp~- 771 (933)
++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++.. .+.. +++++++|+.+...
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g--~~~v~~vD~s~~~l~~a~~n~~~------------n~~~~~v~~~~~d~~~~~~~ 282 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKL------------NGVEDRMKFIVGSAFEEMEK 282 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHH------------TTCGGGEEEEESCHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHH------------cCCCccceEEECCHHHHHHH
Confidence 67899999999999999999885 26999999999999999988752 2333 79999999977532
Q ss_pred ---CCCCccEEEEccccccCCh-------hHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 772 ---RLHGFDIGTCLEVIEHMEE-------DEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 772 ---~~~sFDlVVc~eVLEHLpd-------D~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
....||+|++.--..+... .....+...+.++|+|| .+++.+.+
T Consensus 283 ~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 283 LQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp HHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred HHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 2568999999432111110 22234445699999999 56666654
No 226
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.80 E-value=9.6e-09 Score=111.16 Aligned_cols=130 Identities=17% Similarity=0.172 Sum_probs=91.1
Q ss_pred ccCCchHHHHHHHHHHHh-hcCCCCEEEEEcCCcChHHHHHhcCCCC----CceEEEEeCChHHHHHHHHHHhhhhhccc
Q 002345 673 LFSPPLSKQRVEYALQHI-KESCATTLVDFGCGSGSLLDSLLDYPTA----LEKIVGVDISQKSLSRAAKIIHSKLSKKL 747 (933)
Q Consensus 673 ~F~PPLy~qRve~Ild~L-~~~~g~rVLDIGCGtG~fL~~LAr~g~~----f~~VtGVDIS~emLe~ArkrL~a~ls~~~ 747 (933)
.|.|.--...+..+++.+ ...++.+|||+|||+|.++..+++.... ..+++|+|+++.+++.|+.++..
T Consensus 108 ~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~------ 181 (344)
T 2f8l_A 108 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL------ 181 (344)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH------
T ss_pred CCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHh------
Confidence 344543222223344444 2335679999999999999888765311 15799999999999999887642
Q ss_pred ccCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHH----------------HHHHHHHHHccCCC-EEE
Q 002345 748 DAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA----------------SQFGNIVLSSFRPR-ILI 810 (933)
Q Consensus 748 ~~~~Pr~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l----------------~aL~eeI~rlLKPG-~LI 810 (933)
.+. ++.++++|..... ....||+|+++-.+.+++.++. ..|.+.+.+.|+|| .++
T Consensus 182 ------~g~-~~~i~~~D~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~ 253 (344)
T 2f8l_A 182 ------QRQ-KMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF 253 (344)
T ss_dssp ------HTC-CCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred ------CCC-CceEEECCCCCcc-ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEE
Confidence 122 5789999987643 3568999999988777653332 24566799999999 888
Q ss_pred EEecCC
Q 002345 811 VSTPNY 816 (933)
Q Consensus 811 ITTPN~ 816 (933)
+.+|+.
T Consensus 254 ~v~p~~ 259 (344)
T 2f8l_A 254 FLVPDA 259 (344)
T ss_dssp EEEEGG
T ss_pred EEECch
Confidence 888874
No 227
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.80 E-value=1.7e-08 Score=109.34 Aligned_cols=113 Identities=12% Similarity=0.226 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL-p~ 771 (933)
..+.+|||||||+|.++..++++. +..+|+++|+|+.+++.|++++..... ....++++++.+|+.+. +.
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~--------~~~~~~v~~~~~D~~~~l~~ 185 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISC--------GYEDKRVNVFIEDASKFLEN 185 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSG--------GGGSTTEEEEESCHHHHHHH
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhcc--------ccCCCcEEEEEccHHHHHhh
Confidence 356899999999999999999874 247999999999999999987542100 01135799999998763 22
Q ss_pred CCCCccEEEEccccccCChh-HH--HHHHHHHHHccCCC-EEEEEecC
Q 002345 772 RLHGFDIGTCLEVIEHMEED-EA--SQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD-~l--~aL~eeI~rlLKPG-~LIITTPN 815 (933)
..+.||+|++... +++.+. .. ..+.+.+.++|+|| .+++...+
T Consensus 186 ~~~~fDvIi~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 186 VTNTYDVIIVDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp CCSCEEEEEEECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCCceEEEECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 3568999998643 233211 11 34455699999999 55554433
No 228
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.79 E-value=2e-08 Score=107.29 Aligned_cols=112 Identities=13% Similarity=0.175 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL-p~ 771 (933)
..+.+|||||||+|.++..+++.. +..+|++||+|+.+++.|++++...... ...++++++.+|+.+. +.
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~--------~~~~~v~~~~~D~~~~l~~ 159 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCG--------FDDPRAEIVIANGAEYVRK 159 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGG--------GGCTTEEEEESCHHHHGGG
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccc--------cCCCceEEEECcHHHHHhh
Confidence 356899999999999999999874 2479999999999999999876421100 1235899999998763 33
Q ss_pred CCCCccEEEEcccccc-CChhH---HHHHHHHHHHccCCC-EEEEEec
Q 002345 772 RLHGFDIGTCLEVIEH-MEEDE---ASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEH-LpdD~---l~aL~eeI~rlLKPG-~LIITTP 814 (933)
..+.||+|++... .+ +.+.. ...+.+.+.++|+|| .+++.+.
T Consensus 160 ~~~~fD~Ii~d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 160 FKNEFDVIIIDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp CSSCEEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCCceEEEEcCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 4568999998532 22 22110 034445699999999 5555543
No 229
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.79 E-value=1.5e-08 Score=109.81 Aligned_cols=111 Identities=17% Similarity=0.226 Sum_probs=76.8
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL-p~ 771 (933)
..+.+|||||||+|.++..+++.. +..+|++||+|+.+++.|++++..... ....++++++.+|+.+. +.
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~--------~~~~~rv~~~~~D~~~~l~~ 177 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSC--------GFSHPKLDLFCGDGFEFLKN 177 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSG--------GGGCTTEEEECSCHHHHHHH
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhcc--------ccCCCCEEEEEChHHHHHHh
Confidence 356899999999999999999874 347999999999999999987542100 00135899999998763 33
Q ss_pred CCCCccEEEEccccccCChhH-H--HHHHHHHHHccCCC-EEEEEe
Q 002345 772 RLHGFDIGTCLEVIEHMEEDE-A--SQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~-l--~aL~eeI~rlLKPG-~LIITT 813 (933)
..+.||+|++.. .+|+.+.. + ..+.+.+.++|+|| .+++..
T Consensus 178 ~~~~fD~Ii~d~-~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 178 HKNEFDVIITDS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CTTCEEEEEECC-C-------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCCCceEEEEcC-CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 457899999854 34443222 1 34556799999999 555543
No 230
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.79 E-value=1.9e-08 Score=106.57 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
..+.+|||||||+|.++..+++.+ ..+|++||+++.+++.|++++ ....... ........++++++.+|+.+....
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~--~~~v~~vDid~~~i~~ar~~~-~~~~~l~-~~~~~~~~~~v~~~~~D~~~~l~~ 149 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHD--VDEVIMVEIDEDVIMVSKDLI-KIDNGLL-EAMLNGKHEKAKLTIGDGFEFIKN 149 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSC--CSEEEEEESCHHHHHHHHHHT-CTTTTHH-HHHHTTCCSSEEEEESCHHHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHH-hhccccc-cccccCCCCcEEEEECchHHHhcc
Confidence 467899999999999999999884 379999999999999999875 2100000 000000235899999998653111
Q ss_pred CCCccEEEEccccccCCh-hHH--HHHHHHHHHccCCC-EEEEEe
Q 002345 773 LHGFDIGTCLEVIEHMEE-DEA--SQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpd-D~l--~aL~eeI~rlLKPG-~LIITT 813 (933)
.+.||+|++.... |..+ ..+ ..+.+.+.++|+|| .+++.+
T Consensus 150 ~~~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 150 NRGFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp CCCEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 5689999986543 3221 111 34455699999999 555544
No 231
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.77 E-value=3.6e-08 Score=108.56 Aligned_cols=107 Identities=14% Similarity=0.061 Sum_probs=78.5
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR- 772 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~- 772 (933)
++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++++.. .+..+++++++|+.+....
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~------------n~~~~~~~~~~d~~~~~~~~ 273 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARL------------NGLGNVRVLEANAFDLLRRL 273 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHH------------TTCTTEEEEESCHHHHHHHH
T ss_pred CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHH------------cCCCCceEEECCHHHHHHHH
Confidence 66799999999999999998874 7999999999999999988752 2444699999999875332
Q ss_pred ---CCCccEEEEccccccCCh-------hHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 773 ---LHGFDIGTCLEVIEHMEE-------DEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 773 ---~~sFDlVVc~eVLEHLpd-------D~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
...||+|++.--...... .....+...+.++|+|| .+++++..
T Consensus 274 ~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 274 EKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp HHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 568999998422111100 22234445699999999 66665543
No 232
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.76 E-value=1.7e-08 Score=115.40 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=86.0
Q ss_pred HHHHhhcC--CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 686 ALQHIKES--CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 686 Ild~L~~~--~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+...+... ++.+|||+|||+|..+..|++..+....|+|+|+|+.+++.+++++.. .+..++.+++
T Consensus 107 ~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r------------~g~~nv~~~~ 174 (479)
T 2frx_A 107 PVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISR------------CGISNVALTH 174 (479)
T ss_dssp HHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHH------------HTCCSEEEEC
T ss_pred HHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH------------cCCCcEEEEe
Confidence 33445555 788999999999999999987532226899999999999999988762 2445799999
Q ss_pred cCccccCC-CCCCccEEEE------ccccccCCh-------hH-------HHHHHHHHHHccCCC-EEEEEecC
Q 002345 764 GSITVFDS-RLHGFDIGTC------LEVIEHMEE-------DE-------ASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 764 GDaedLp~-~~~sFDlVVc------~eVLEHLpd-------D~-------l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+|+.+++. ..+.||+|++ ..++.+.++ +. ...+.+.+.++|||| .++++|..
T Consensus 175 ~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 175 FDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 99988754 4568999998 234444331 11 123455689999999 77777653
No 233
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.76 E-value=1.9e-08 Score=108.46 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=72.8
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
-.+.+++.+...++.+|||||||+|.++..|++.+ .+|+|||+|+.|++.+++++. ...++++
T Consensus 38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~--------------~~~~v~v 100 (295)
T 3gru_A 38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKE--------------LYNNIEI 100 (295)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHH--------------HCSSEEE
T ss_pred HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhc--------------cCCCeEE
Confidence 34456677776778899999999999999999986 799999999999999988764 1347999
Q ss_pred EEcCccccCCCCCCccEEEEcccc
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEVI 785 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eVL 785 (933)
+++|+.++++....||+|+++.-.
T Consensus 101 i~gD~l~~~~~~~~fD~Iv~NlPy 124 (295)
T 3gru_A 101 IWGDALKVDLNKLDFNKVVANLPY 124 (295)
T ss_dssp EESCTTTSCGGGSCCSEEEEECCG
T ss_pred EECchhhCCcccCCccEEEEeCcc
Confidence 999999988777789999987443
No 234
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=98.75 E-value=4.8e-08 Score=107.23 Aligned_cols=106 Identities=11% Similarity=0.035 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc-cCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-FDS 771 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaed-Lp~ 771 (933)
.++.+|||+| |+|.++..+++.+ +..+|+|+|+|+.|++.|++++... +..+++++++|+.+ ++.
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~-~~~~v~~vDi~~~~l~~a~~~~~~~------------g~~~v~~~~~D~~~~l~~ 236 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSG-LPKRIAVLDIDERLTKFIEKAANEI------------GYEDIEIFTFDLRKPLPD 236 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHHHH------------TCCCEEEECCCTTSCCCT
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc------------CCCCEEEEEChhhhhchh
Confidence 3578999999 9999999998875 2258999999999999999887531 23379999999988 653
Q ss_pred -CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC--EEEEEecC
Q 002345 772 -RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPN 815 (933)
Q Consensus 772 -~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG--~LIITTPN 815 (933)
..+.||+|++...+++.. ...+.+.+.++|+|| .+++++-.
T Consensus 237 ~~~~~fD~Vi~~~p~~~~~---~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 237 YALHKFDTFITDPPETLEA---IRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp TTSSCBSEEEECCCSSHHH---HHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred hccCCccEEEECCCCchHH---HHHHHHHHHHHcccCCeEEEEEEec
Confidence 346899999987654432 245556799999997 34666544
No 235
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.74 E-value=5.8e-09 Score=111.12 Aligned_cols=115 Identities=16% Similarity=0.069 Sum_probs=75.8
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
+.++.+.....++.+|||+|||+|.++..+++. .+|+|||+++ |+..++++. . .......++.++
T Consensus 71 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~---~-------~~~~~~~~v~~~ 135 (276)
T 2wa2_A 71 LAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKP---R-------LVETFGWNLITF 135 (276)
T ss_dssp HHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCC---C-------CCCCTTGGGEEE
T ss_pred HHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhch---h-------hhhhcCCCeEEE
Confidence 344444422346789999999999999999987 3799999998 643332110 0 000111278999
Q ss_pred --EcCccccCCCCCCccEEEEccccccCChh---HHH--HHHHHHHHccCCCE---EEEEecC
Q 002345 763 --DGSITVFDSRLHGFDIGTCLEVIEHMEED---EAS--QFGNIVLSSFRPRI---LIVSTPN 815 (933)
Q Consensus 763 --~GDaedLp~~~~sFDlVVc~eVLEHLpdD---~l~--aL~eeI~rlLKPG~---LIITTPN 815 (933)
++|+.+++ +..||+|+|..+ ++.... ... .+.+.+.++|+||+ +++.+..
T Consensus 136 ~~~~D~~~l~--~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 136 KSKVDVTKME--PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp ECSCCGGGCC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred eccCcHhhCC--CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 99998876 578999999887 554321 111 13456889999986 5555554
No 236
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=98.73 E-value=8.3e-09 Score=109.19 Aligned_cols=116 Identities=12% Similarity=0.060 Sum_probs=76.8
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCC-CCCCccE
Q 002345 681 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP-CTDVKSA 759 (933)
Q Consensus 681 qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~P-r~~~~nV 759 (933)
..+..+.+.....++.+|||||||+|.++..+++. .+|+|||+++ |+..+++. . .+ .....++
T Consensus 61 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~--~---------~~~~~~~~~v 124 (265)
T 2oxt_A 61 AKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEV--P---------RITESYGWNI 124 (265)
T ss_dssp HHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCC--C---------CCCCBTTGGG
T ss_pred HHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhh--h---------hhhhccCCCe
Confidence 34445555533346789999999999999999987 3799999998 54332110 0 00 0011278
Q ss_pred EEE--EcCccccCCCCCCccEEEEccccccCChh---HHH--HHHHHHHHccCCCE---EEEEecC
Q 002345 760 VLF--DGSITVFDSRLHGFDIGTCLEVIEHMEED---EAS--QFGNIVLSSFRPRI---LIVSTPN 815 (933)
Q Consensus 760 efi--~GDaedLp~~~~sFDlVVc~eVLEHLpdD---~l~--aL~eeI~rlLKPG~---LIITTPN 815 (933)
.++ ++|+.+++ +..||+|+|..+ ++.... ... .+.+.+.++|+||+ +++.+..
T Consensus 125 ~~~~~~~D~~~l~--~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 125 VKFKSRVDIHTLP--VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp EEEECSCCTTTSC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EEEecccCHhHCC--CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 999 99999876 578999999877 554321 111 13456889999985 5555655
No 237
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=98.70 E-value=5.1e-08 Score=95.08 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=70.6
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCC--------ceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE-E
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTAL--------EKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF-D 763 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f--------~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi-~ 763 (933)
.++.+|||+|||+|.++..|++..+.. .+|+|+|+|+.+ ...+++++ +
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------------------~~~~~~~~~~ 77 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------------------PLEGATFLCP 77 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------------------CCTTCEEECS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------------------cCCCCeEEEe
Confidence 357899999999999999999874221 589999999831 11357888 8
Q ss_pred cCccccC--------CCCCCccEEEEccccccCC---hhHH------HHHHHHHHHccCCC-EEEEEecCC
Q 002345 764 GSITVFD--------SRLHGFDIGTCLEVIEHME---EDEA------SQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 764 GDaedLp--------~~~~sFDlVVc~eVLEHLp---dD~l------~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+|+.+.+ ....+||+|+|...+++.. .+.. ..+.+++.++|+|| .+++.+...
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 78 ADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp CCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred ccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 8887643 2345899999976544321 1221 24445699999999 777766654
No 238
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.68 E-value=4.3e-08 Score=109.64 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=86.7
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+...+...++.+|||+|||+|..+..+++..+ ..+|+|+|+++.+++.+++++.. .+. ++.++++|
T Consensus 238 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~------------~g~-~~~~~~~D 303 (429)
T 1sqg_A 238 CMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKR------------LGM-KATVKQGD 303 (429)
T ss_dssp HHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHH------------TTC-CCEEEECC
T ss_pred HHHHcCCCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHH------------cCC-CeEEEeCc
Confidence 44555566788999999999999999998653 26999999999999999988752 222 47899999
Q ss_pred ccccC--CCCCCccEEEE------ccccccCChhH--------------HHHHHHHHHHccCCC-EEEEEecC
Q 002345 766 ITVFD--SRLHGFDIGTC------LEVIEHMEEDE--------------ASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 766 aedLp--~~~~sFDlVVc------~eVLEHLpdD~--------------l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+.+++ +..+.||+|++ ..+++|.++.. ...+.+.+.++|||| .++++|..
T Consensus 304 ~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 304 GRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp TTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred hhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 98765 34568999996 34666655211 124455699999999 77777743
No 239
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.68 E-value=2.2e-08 Score=114.27 Aligned_cols=117 Identities=9% Similarity=0.016 Sum_probs=85.0
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+...+...++.+|||+|||+|..+..|++..+...+|+|+|+|+.+++.+++++.. .+.. +.+.++|
T Consensus 93 ~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r------------~G~~-v~~~~~D 159 (464)
T 3m6w_A 93 VGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVER------------WGAP-LAVTQAP 159 (464)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH------------HCCC-CEEECSC
T ss_pred HHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH------------cCCe-EEEEECC
Confidence 44455566789999999999999999986532225899999999999999988762 2444 8999999
Q ss_pred ccccCC-CCCCccEEEE------ccccccCChh-------H-------HHHHHHHHHHccCCC-EEEEEecC
Q 002345 766 ITVFDS-RLHGFDIGTC------LEVIEHMEED-------E-------ASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 766 aedLp~-~~~sFDlVVc------~eVLEHLpdD-------~-------l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+.+++. ..+.||+|++ ..++.+-++. . ...+.+.+.++|||| .++.+|..
T Consensus 160 a~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 160 PRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp HHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred HHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 987652 4578999995 2344433311 1 134556699999998 67766653
No 240
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.68 E-value=6.9e-08 Score=104.80 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=82.6
Q ss_pred ccCCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCC
Q 002345 673 LFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP 752 (933)
Q Consensus 673 ~F~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~P 752 (933)
.|.+.....|. .+...+ .++.+|||+|||+|.++.. ++.+ .+|+|+|+|+.+++.|++++..
T Consensus 177 ~~~~~~~~er~-~i~~~~--~~~~~VLDlg~G~G~~~l~-a~~~---~~V~~vD~s~~ai~~a~~n~~~----------- 238 (336)
T 2yx1_A 177 YFSPRLGGERA-RIMKKV--SLNDVVVDMFAGVGPFSIA-CKNA---KKIYAIDINPHAIELLKKNIKL----------- 238 (336)
T ss_dssp CCCGGGHHHHH-HHHHHC--CTTCEEEETTCTTSHHHHH-TTTS---SEEEEEESCHHHHHHHHHHHHH-----------
T ss_pred ccCCccHHHHH-HHHHhc--CCCCEEEEccCccCHHHHh-ccCC---CEEEEEECCHHHHHHHHHHHHH-----------
Confidence 34444445554 343443 3678999999999999999 8732 7999999999999999988752
Q ss_pred CCCC-ccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 753 CTDV-KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 753 r~~~-~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.+. .+++++++|+.+.. ..||+|++.-- .+ . ..+.+.+.++|+|| .+++.+..
T Consensus 239 -n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP-~~-~----~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 239 -NKLEHKIIPILSDVREVD---VKGNRVIMNLP-KF-A----HKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp -TTCTTTEEEEESCGGGCC---CCEEEEEECCT-TT-G----GGGHHHHHHHEEEEEEEEEEEEE
T ss_pred -cCCCCcEEEEECChHHhc---CCCcEEEECCc-Hh-H----HHHHHHHHHHcCCCCEEEEEEee
Confidence 222 47999999998875 78999998532 11 1 13445588999999 55555443
No 241
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.67 E-value=7.1e-08 Score=101.72 Aligned_cols=83 Identities=20% Similarity=0.247 Sum_probs=67.2
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
-.+.+++.+...++.+|||||||+|.++..|++.+ .+|+|||+|+.|++.+++++. ...++++
T Consensus 17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~--------------~~~~v~~ 79 (255)
T 3tqs_A 17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYN--------------QQKNITI 79 (255)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHT--------------TCTTEEE
T ss_pred HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHh--------------hCCCcEE
Confidence 34456677777788899999999999999999987 799999999999999988764 1358999
Q ss_pred EEcCccccCCCC----CCccEEEEc
Q 002345 762 FDGSITVFDSRL----HGFDIGTCL 782 (933)
Q Consensus 762 i~GDaedLp~~~----~sFDlVVc~ 782 (933)
+++|+.++++.. ..|| |+++
T Consensus 80 i~~D~~~~~~~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 80 YQNDALQFDFSSVKTDKPLR-VVGN 103 (255)
T ss_dssp EESCTTTCCGGGSCCSSCEE-EEEE
T ss_pred EEcchHhCCHHHhccCCCeE-EEec
Confidence 999999887642 4577 4443
No 242
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.66 E-value=8.5e-08 Score=99.55 Aligned_cols=83 Identities=12% Similarity=0.193 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
..+.+++.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.+++++. ...++++
T Consensus 18 ~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~--------------~~~~v~~ 80 (244)
T 1qam_A 18 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLV--------------DHDNFQV 80 (244)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTT--------------TCCSEEE
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhc--------------cCCCeEE
Confidence 34456666666678899999999999999999987 799999999999999987653 1247999
Q ss_pred EEcCccccCCCC-CCccEEEEc
Q 002345 762 FDGSITVFDSRL-HGFDIGTCL 782 (933)
Q Consensus 762 i~GDaedLp~~~-~sFDlVVc~ 782 (933)
+++|+.++++.. ..| .|+++
T Consensus 81 ~~~D~~~~~~~~~~~~-~vv~n 101 (244)
T 1qam_A 81 LNKDILQFKFPKNQSY-KIFGN 101 (244)
T ss_dssp ECCCGGGCCCCSSCCC-EEEEE
T ss_pred EEChHHhCCcccCCCe-EEEEe
Confidence 999999987653 345 34443
No 243
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.66 E-value=1.8e-07 Score=105.34 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=74.0
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.|++++.. .+.. ++|+++|+.++...
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~---~~V~gvD~s~~ai~~A~~n~~~------------ngl~-v~~~~~d~~~~~~~ 352 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRG---FNVKGFDSNEFAIEMARRNVEI------------NNVD-AEFEVASDREVSVK 352 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH------------HTCC-EEEEECCTTTCCCT
T ss_pred CCCCEEEEeeccchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHH------------cCCc-EEEEECChHHcCcc
Confidence 467899999999999999999986 6999999999999999987652 1334 99999999887533
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
.||+|++.---..+. ..+.+.+ +.|+|| .++++.
T Consensus 353 --~fD~Vv~dPPr~g~~----~~~~~~l-~~l~p~givyvsc 387 (425)
T 2jjq_A 353 --GFDTVIVDPPRAGLH----PRLVKRL-NREKPGVIVYVSC 387 (425)
T ss_dssp --TCSEEEECCCTTCSC----HHHHHHH-HHHCCSEEEEEES
T ss_pred --CCCEEEEcCCccchH----HHHHHHH-HhcCCCcEEEEEC
Confidence 899999964433333 1233323 458999 666654
No 244
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.66 E-value=2e-07 Score=104.05 Aligned_cols=105 Identities=10% Similarity=-0.078 Sum_probs=72.7
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-CC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-SR 772 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp-~~ 772 (933)
++.+|||+|||+|.++..+++.+ ..|+|+|+|+.+++.|++++... +. ...+.++|+.+.. ..
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~g---a~V~avDis~~al~~a~~n~~~n------------g~-~~~~~~~D~~~~l~~~ 277 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKG---AYALAVDKDLEALGVLDQAALRL------------GL-RVDIRHGEALPTLRGL 277 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHH------------TC-CCEEEESCHHHHHHTC
T ss_pred CCCeEEEcccchhHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHHh------------CC-CCcEEEccHHHHHHHh
Confidence 47899999999999999999987 45999999999999999887531 22 1356699987742 21
Q ss_pred CCCccEEEEccccccCCh-------hHHHHHHHHHHHccCCC-EEEEEec
Q 002345 773 LHGFDIGTCLEVIEHMEE-------DEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpd-------D~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
.+.||+|++.--..+-.. .....+.+.+.++|+|| .+++.+.
T Consensus 278 ~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~ 327 (393)
T 4dmg_A 278 EGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC 327 (393)
T ss_dssp CCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 334999998532211100 11134445689999999 4444443
No 245
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.65 E-value=4.7e-08 Score=103.20 Aligned_cols=100 Identities=13% Similarity=0.059 Sum_probs=75.0
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
..+.+|||||||+|.++..++++ + .+|+++|+++.+++.|++++...... ...++++++.+|+.+..
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~--------~~~~rv~~~~~D~~~~~-- 137 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEV--------KNNKNFTHAKQLLDLDI-- 137 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHH--------HTCTTEEEESSGGGSCC--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccc--------cCCCeEEEEechHHHHH--
Confidence 35689999999999999999988 3 79999999999999998754321000 02357999999998764
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
+.||+|++. .. ++.. +.+.+.++|+|| .+++.+
T Consensus 138 -~~fD~Ii~d-----~~-dp~~-~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 138 -KKYDLIFCL-----QE-PDIH-RIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -CCEEEEEES-----SC-CCHH-HHHHHHTTEEEEEEEEEEE
T ss_pred -hhCCEEEEC-----CC-ChHH-HHHHHHHhcCCCcEEEEEc
Confidence 789999986 23 2333 445699999999 555543
No 246
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.64 E-value=6.2e-08 Score=115.42 Aligned_cols=106 Identities=12% Similarity=0.078 Sum_probs=79.9
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC--ccEEEEEcCcccc-C
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV--KSAVLFDGSITVF-D 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~--~nVefi~GDaedL-p 770 (933)
++.+|||+|||+|.++..+++.+. .+|++||+|+.+++.|++++.. .+. .+++++++|+.+. +
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~------------ngl~~~~v~~i~~D~~~~l~ 604 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRL------------NGLTGRAHRLIQADCLAWLR 604 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH------------TTCCSTTEEEEESCHHHHHH
T ss_pred CCCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHH------------cCCCccceEEEecCHHHHHH
Confidence 678999999999999999998763 6799999999999999988752 232 3799999999873 3
Q ss_pred CCCCCccEEEEcc-----------ccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 771 SRLHGFDIGTCLE-----------VIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 771 ~~~~sFDlVVc~e-----------VLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.....||+|++.- ++++.. +. ..+.+.+.++|+|| .+++++..
T Consensus 605 ~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~-~~-~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 605 EANEQFDLIFIDPPTFSNSKRMEDAFDVQR-DH-LALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp HCCCCEEEEEECCCSBC-------CCBHHH-HH-HHHHHHHHHHEEEEEEEEEEECC
T ss_pred hcCCCccEEEECCccccCCccchhHHHHHH-HH-HHHHHHHHHhcCCCcEEEEEECC
Confidence 3457899999843 222222 33 34445689999999 66665544
No 247
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=98.64 E-value=1.9e-07 Score=93.56 Aligned_cols=97 Identities=11% Similarity=0.155 Sum_probs=69.1
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+|||+|||+|.++..+++.+ .+|+|||+++.. ..++++++++|+.+.+..
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~~---~~V~gvD~~~~~-----------------------~~~~v~~~~~D~~~~~~~ 77 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSLA---RKIISIDLQEME-----------------------EIAGVRFIRCDIFKETIF 77 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTTC---SEEEEEESSCCC-----------------------CCTTCEEEECCTTSSSHH
T ss_pred CCCCEEEEEeecCCHHHHHHHHcC---CcEEEEeccccc-----------------------cCCCeEEEEccccCHHHH
Confidence 367899999999999999999985 799999999731 124789999999875421
Q ss_pred -----------CCCccEEEEccccccCC---hh------HHHHHHHHHHHccCCC-EEEEEecC
Q 002345 773 -----------LHGFDIGTCLEVIEHME---ED------EASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 773 -----------~~sFDlVVc~eVLEHLp---dD------~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
.+.||+|++........ .+ ....+.+.+.++|||| .+++.+-.
T Consensus 78 ~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~ 141 (191)
T 3dou_A 78 DDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ 141 (191)
T ss_dssp HHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence 14899999976432211 01 1123445689999999 66655544
No 248
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.64 E-value=2.4e-08 Score=107.74 Aligned_cols=103 Identities=16% Similarity=0.084 Sum_probs=71.9
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeC----ChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc-Ccc
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDI----SQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG-SIT 767 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDI----S~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G-Dae 767 (933)
.++.+|||||||+|.++..+++.+ +|+|||+ ++.+++.++ .. ..+.+++.++++ |+.
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~~----~V~gvD~~~~~~~~~~~~~~--~~------------~~~~~~v~~~~~~D~~ 142 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGLK----NVREVKGLTKGGPGHEEPIP--MS------------TYGWNLVRLQSGVDVF 142 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTST----TEEEEEEECCCSTTSCCCCC--CC------------STTGGGEEEECSCCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHhcC----CEEEEeccccCchhHHHHHH--hh------------hcCCCCeEEEeccccc
Confidence 356899999999999999999873 7999999 555442110 00 112357999999 988
Q ss_pred ccCCCCCCccEEEEccccc---cCChhH--HHHHHHHHHHccCCC-EEEEEecCC
Q 002345 768 VFDSRLHGFDIGTCLEVIE---HMEEDE--ASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 768 dLp~~~~sFDlVVc~eVLE---HLpdD~--l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+++ ...||+|+|....+ +..+.. ...| +.+.++|||| .+++.++..
T Consensus 143 ~l~--~~~fD~V~sd~~~~~g~~~~d~~~~l~~L-~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 143 FIP--PERCDTLLCDIGESSPNPTVEAGRTLRVL-NLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp TSC--CCCCSEEEECCCCCCSSHHHHHHHHHHHH-HHHHHHCCTTCEEEEEESCC
T ss_pred cCC--cCCCCEEEECCccccCcchhhHHHHHHHH-HHHHHHhCCCCEEEEEeCCC
Confidence 765 45899999977653 222111 1234 4588999999 777777654
No 249
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.63 E-value=1.9e-07 Score=103.90 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=92.8
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCC-------------------------------------C
Q 002345 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA-------------------------------------L 719 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~-------------------------------------f 719 (933)
|+.+.....++......++..|||.+||+|.++..++..+.. .
T Consensus 177 pl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 256 (384)
T 3ldg_A 177 PIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ 256 (384)
T ss_dssp CCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred CCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence 455555555666666567789999999999999877754311 0
Q ss_pred ceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEEEEEcCccccCCCCCCccEEEEcccc-ccCC-hhHHHHH
Q 002345 720 EKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDGSITVFDSRLHGFDIGTCLEVI-EHME-EDEASQF 796 (933)
Q Consensus 720 ~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~-~nVefi~GDaedLp~~~~sFDlVVc~eVL-EHLp-dD~l~aL 796 (933)
.+|+|+|+|+.|++.|++++.. .+. ..+++.++|+.+++.. ..||+|+++--. +-+. ...+..+
T Consensus 257 ~~v~GvDid~~al~~Ar~Na~~------------~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~l 323 (384)
T 3ldg_A 257 LDISGFDFDGRMVEIARKNARE------------VGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDIL 323 (384)
T ss_dssp CCEEEEESCHHHHHHHHHHHHH------------TTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHH------------cCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHH
Confidence 3599999999999999988753 222 3599999999998764 489999997332 1232 2334444
Q ss_pred HHHHHHccCC--C-EEEEEecCCchhHHH
Q 002345 797 GNIVLSSFRP--R-ILIVSTPNYEYNAIL 822 (933)
Q Consensus 797 ~eeI~rlLKP--G-~LIITTPN~efNs~f 822 (933)
.+.+.+.|++ | .++|-|++.++...+
T Consensus 324 y~~lg~~lk~~~g~~~~iit~~~~l~~~~ 352 (384)
T 3ldg_A 324 YNEMGETFAPLKTWSQFILTNDTDFEQKF 352 (384)
T ss_dssp HHHHHHHHTTCTTSEEEEEESCTTHHHHH
T ss_pred HHHHHHHHhhCCCcEEEEEECCHHHHHHh
Confidence 4456667766 6 888888887755443
No 250
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.63 E-value=8.8e-08 Score=106.83 Aligned_cols=134 Identities=13% Similarity=0.132 Sum_probs=91.8
Q ss_pred CchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCC-------------------------------------
Q 002345 676 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA------------------------------------- 718 (933)
Q Consensus 676 PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~------------------------------------- 718 (933)
.|+.+.....++......++.+|||.+||+|.++..++..+..
T Consensus 183 Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~ 262 (393)
T 3k0b_A 183 APIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQ 262 (393)
T ss_dssp CSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred CCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccC
Confidence 3566666666666666567789999999999999877754311
Q ss_pred CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEEEEEcCccccCCCCCCccEEEEcccc-ccCCh-hHHHH
Q 002345 719 LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDGSITVFDSRLHGFDIGTCLEVI-EHMEE-DEASQ 795 (933)
Q Consensus 719 f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~-~nVefi~GDaedLp~~~~sFDlVVc~eVL-EHLpd-D~l~a 795 (933)
..+|+|+|+|+.|++.|++++.. .+. ..+++.++|+.+++.. ..||+|+++--. +.+.+ ..+..
T Consensus 263 ~~~V~GvDid~~al~~Ar~Na~~------------~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ 329 (393)
T 3k0b_A 263 PLNIIGGDIDARLIEIAKQNAVE------------AGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQ 329 (393)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHH------------TTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHH------------cCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHH
Confidence 13599999999999999988753 222 3589999999988754 489999998432 22321 22333
Q ss_pred HHHHHHHccCC--C-EEEEEecCCchhHHH
Q 002345 796 FGNIVLSSFRP--R-ILIVSTPNYEYNAIL 822 (933)
Q Consensus 796 L~eeI~rlLKP--G-~LIITTPN~efNs~f 822 (933)
+.+.+.+.|++ | .++|-|++.++...+
T Consensus 330 ly~~lg~~lk~~~g~~~~iit~~~~l~~~~ 359 (393)
T 3k0b_A 330 LYREMGIVYKRMPTWSVYVLTSYELFEEVY 359 (393)
T ss_dssp HHHHHHHHHHTCTTCEEEEEECCTTHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEEECCHHHHHHh
Confidence 33345555554 6 888888887754433
No 251
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.60 E-value=5.8e-08 Score=106.40 Aligned_cols=112 Identities=16% Similarity=0.281 Sum_probs=80.6
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
.+++++.+...++.+|||+|||+|.++..++++.+...+++|+|+++.+++.| .+++++
T Consensus 28 ~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------------------~~~~~~ 86 (421)
T 2ih2_A 28 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------------PWAEGI 86 (421)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------------TTEEEE
T ss_pred HHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------------CCCcEE
Confidence 34556666544567999999999999999987421126899999999988655 268899
Q ss_pred EcCccccCCCCCCccEEEEcc---cc-------ccCChhHH-----------------HHHHHHHHHccCCC-EEEEEec
Q 002345 763 DGSITVFDSRLHGFDIGTCLE---VI-------EHMEEDEA-----------------SQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 763 ~GDaedLp~~~~sFDlVVc~e---VL-------EHLpdD~l-----------------~aL~eeI~rlLKPG-~LIITTP 814 (933)
++|+.+... ...||+|+++- .. +|+.++.. ..|.+.+.++|+|| .+++.+|
T Consensus 87 ~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 87 LADFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp ESCGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eCChhhcCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 999987653 46899999951 11 22443332 14566799999998 7778888
Q ss_pred CC
Q 002345 815 NY 816 (933)
Q Consensus 815 N~ 816 (933)
+.
T Consensus 166 ~~ 167 (421)
T 2ih2_A 166 AT 167 (421)
T ss_dssp GG
T ss_pred hH
Confidence 63
No 252
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.59 E-value=4.8e-08 Score=111.23 Aligned_cols=118 Identities=13% Similarity=0.038 Sum_probs=85.0
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+...+...++.+|||+|||+|..+..|++..+.-.+|+|+|+++.+++.+++++.. .+..++.+.++|
T Consensus 97 ~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r------------~g~~nv~v~~~D 164 (456)
T 3m4x_A 97 VGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIER------------WGVSNAIVTNHA 164 (456)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHH------------HTCSSEEEECCC
T ss_pred HHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCceEEEeCC
Confidence 44555666789999999999999988886521125899999999999999988763 244579999999
Q ss_pred ccccCC-CCCCccEEEEc------cccccCCh--------------hHHHHHHHHHHHccCCC-EEEEEecC
Q 002345 766 ITVFDS-RLHGFDIGTCL------EVIEHMEE--------------DEASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 766 aedLp~-~~~sFDlVVc~------eVLEHLpd--------------D~l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
+.+++. ..+.||+|++. .++.+-++ .....+.+.+.++|||| .++.+|-.
T Consensus 165 a~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 165 PAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp HHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred HHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 987652 35789999973 23333221 01124455699999999 67766653
No 253
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.59 E-value=1.9e-07 Score=103.79 Aligned_cols=135 Identities=21% Similarity=0.175 Sum_probs=94.1
Q ss_pred CchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCC-------------------------------------
Q 002345 676 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA------------------------------------- 718 (933)
Q Consensus 676 PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~------------------------------------- 718 (933)
.|+.+.....++......++.+|||+|||+|.++..++..+..
T Consensus 177 Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~ 256 (385)
T 3ldu_A 177 APIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNES 256 (385)
T ss_dssp CCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSC
T ss_pred CCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccC
Confidence 3566666666666666667789999999999999887754310
Q ss_pred CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCccEEEEcccc-ccCC-hhHHHHH
Q 002345 719 LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVI-EHME-EDEASQF 796 (933)
Q Consensus 719 f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~sFDlVVc~eVL-EHLp-dD~l~aL 796 (933)
..+|+|+|+|+.|++.|++++... +....+++.++|+.+++.. ..||+|+++--. +.+. .+.+..+
T Consensus 257 ~~~V~GvDid~~ai~~Ar~Na~~~-----------gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~l 324 (385)
T 3ldu_A 257 KFKIYGYDIDEESIDIARENAEIA-----------GVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQL 324 (385)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHH-----------TCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHc-----------CCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHH
Confidence 136999999999999999887531 1123799999999988654 589999996543 3333 1233334
Q ss_pred HHHHHHccCC--C-EEEEEecCCchhHHH
Q 002345 797 GNIVLSSFRP--R-ILIVSTPNYEYNAIL 822 (933)
Q Consensus 797 ~eeI~rlLKP--G-~LIITTPN~efNs~f 822 (933)
.+.+.+.|++ | .++|-|++.++...+
T Consensus 325 y~~lg~~lk~~~g~~~~iit~~~~l~~~~ 353 (385)
T 3ldu_A 325 YKELGYAFRKLKNWSYYLITSYEDFEYEF 353 (385)
T ss_dssp HHHHHHHHHTSBSCEEEEEESCTTHHHHH
T ss_pred HHHHHHHHhhCCCCEEEEEECCHHHHHhh
Confidence 4446666665 6 778888887755433
No 254
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.58 E-value=1.3e-07 Score=101.33 Aligned_cols=116 Identities=19% Similarity=0.145 Sum_probs=86.4
Q ss_pred hcccCCchHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC
Q 002345 671 QALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA 750 (933)
Q Consensus 671 ~~~F~PPLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~ 750 (933)
..+|.+.+..+|... .+.+. ++.+|||+|||+|.++..+++.+. .+|+|+|+++.+++.+++++...
T Consensus 105 k~~f~~~~~~er~ri-~~~~~--~g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N-------- 171 (278)
T 3k6r_A 105 KIMFSPANVKERVRM-AKVAK--PDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLN-------- 171 (278)
T ss_dssp TSCCCGGGHHHHHHH-HHHCC--TTCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHT--------
T ss_pred ceEEcCCcHHHHHHH-HHhcC--CCCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHc--------
Confidence 456788888877643 34433 688999999999999999998874 68999999999999999987621
Q ss_pred CCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEE
Q 002345 751 VPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRIL 809 (933)
Q Consensus 751 ~Pr~~~~nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~L 809 (933)
.-..+++++++|+.++.. ...||.|++..- .... .|.+.+.++|+||++
T Consensus 172 ---~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p-----~~~~-~~l~~a~~~lk~gG~ 220 (278)
T 3k6r_A 172 ---KVEDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTH-EFIPKALSIAKDGAI 220 (278)
T ss_dssp ---TCTTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGG-GGHHHHHHHEEEEEE
T ss_pred ---CCCCcEEEEeCcHHHhcc-ccCCCEEEECCC-----CcHH-HHHHHHHHHcCCCCE
Confidence 123469999999988764 468999987532 1111 233457889999943
No 255
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.57 E-value=1.2e-07 Score=101.04 Aligned_cols=91 Identities=9% Similarity=0.058 Sum_probs=72.0
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
..+.+++.+...++ +|||||||+|.++..|++.+ .+|+|+|+|+.|++.+++++. ..++++
T Consensus 35 i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~---------------~~~v~v 95 (271)
T 3fut_A 35 HLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLS---------------GLPVRL 95 (271)
T ss_dssp HHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTT---------------TSSEEE
T ss_pred HHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcC---------------CCCEEE
Confidence 34556677766677 99999999999999999987 689999999999999987642 247999
Q ss_pred EEcCccccCCCC-CCccEEEEccccccCChhH
Q 002345 762 FDGSITVFDSRL-HGFDIGTCLEVIEHMEEDE 792 (933)
Q Consensus 762 i~GDaedLp~~~-~sFDlVVc~eVLEHLpdD~ 792 (933)
+++|+.++++.. ..+|.|+++- -.++..+.
T Consensus 96 i~~D~l~~~~~~~~~~~~iv~Nl-Py~iss~i 126 (271)
T 3fut_A 96 VFQDALLYPWEEVPQGSLLVANL-PYHIATPL 126 (271)
T ss_dssp EESCGGGSCGGGSCTTEEEEEEE-CSSCCHHH
T ss_pred EECChhhCChhhccCccEEEecC-cccccHHH
Confidence 999999887653 3688888764 45666343
No 256
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.55 E-value=1.9e-07 Score=102.50 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002345 680 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759 (933)
Q Consensus 680 ~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV 759 (933)
.+.++++++.+... +.+|||+|||+|.++..|++.. .+|+|+|+|+.+++.|++++.. .+..++
T Consensus 200 ~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~------------ng~~~v 263 (369)
T 3bt7_A 200 IQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAA------------NHIDNV 263 (369)
T ss_dssp HHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHH------------TTCCSE
T ss_pred HHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHH------------cCCCce
Confidence 44456666665433 5789999999999999999865 6999999999999999988652 244589
Q ss_pred EEEEcCccccCC--CC--------------CCccEEEEc
Q 002345 760 VLFDGSITVFDS--RL--------------HGFDIGTCL 782 (933)
Q Consensus 760 efi~GDaedLp~--~~--------------~sFDlVVc~ 782 (933)
+++.+|+.++.. .. ..||+|++.
T Consensus 264 ~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~d 302 (369)
T 3bt7_A 264 QIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVD 302 (369)
T ss_dssp EEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEEC
T ss_pred EEEECCHHHHHHHHhhccccccccccccccCCCCEEEEC
Confidence 999999976421 11 379999874
No 257
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.48 E-value=7.9e-08 Score=101.37 Aligned_cols=88 Identities=14% Similarity=0.011 Sum_probs=65.1
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCCh-------HHHHHHHHHHhhhhhcccccCCCCCCC-c
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQ-------KSLSRAAKIIHSKLSKKLDAAVPCTDV-K 757 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~-------emLe~ArkrL~a~ls~~~~~~~Pr~~~-~ 757 (933)
+...+...++.+|||+|||+|.++..|++.+ .+|+|+|+++ .+++.|++++... +. .
T Consensus 75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g---~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~------------~~~~ 139 (258)
T 2r6z_A 75 IAKAVNHTAHPTVWDATAGLGRDSFVLASLG---LTVTAFEQHPAVACLLSDGIRRALLNPETQ------------DTAA 139 (258)
T ss_dssp HHHHTTGGGCCCEEETTCTTCHHHHHHHHTT---CCEEEEECCHHHHHHHHHHHHHHHHSHHHH------------HHHT
T ss_pred HHHHhCcCCcCeEEEeeCccCHHHHHHHHhC---CEEEEEECChhhhHHHHHHHHHHHhHHHhh------------CCcc
Confidence 4444444456899999999999999999986 6899999999 9999997654321 12 2
Q ss_pred cEEEEEcCcccc-C-CCC--CCccEEEEccccccC
Q 002345 758 SAVLFDGSITVF-D-SRL--HGFDIGTCLEVIEHM 788 (933)
Q Consensus 758 nVefi~GDaedL-p-~~~--~sFDlVVc~eVLEHL 788 (933)
+++++++|+.++ + ..+ .+||+|++.-.++|.
T Consensus 140 ri~~~~~d~~~~l~~~~~~~~~fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 140 RINLHFGNAAEQMPALVKTQGKPDIVYLDPMYPER 174 (258)
T ss_dssp TEEEEESCHHHHHHHHHHHHCCCSEEEECCCC---
T ss_pred CeEEEECCHHHHHHhhhccCCCccEEEECCCCCCc
Confidence 499999999874 2 222 689999997666653
No 258
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.47 E-value=1.2e-07 Score=106.61 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=85.5
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCC------------CCceEEEEeCChHHHHHHHHHHhhhhhcccccC
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPT------------ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA 750 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~------------~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~ 750 (933)
.+++++.+....+.+|||.|||+|.++..++++.. ...+++|+|+++.+++.|+.++.-
T Consensus 160 ~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l--------- 230 (445)
T 2okc_A 160 IQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL--------- 230 (445)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH---------
Confidence 34566666666778999999999999988775310 014799999999999999876541
Q ss_pred CCCCCCc--cEEEEEcCccccCCCCCCccEEEEccccccCChh---------------HHHHHHHHHHHccCCC-EEEEE
Q 002345 751 VPCTDVK--SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEED---------------EASQFGNIVLSSFRPR-ILIVS 812 (933)
Q Consensus 751 ~Pr~~~~--nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD---------------~l~aL~eeI~rlLKPG-~LIIT 812 (933)
.+.. ++.+.++|....+.. ..||+|+++--+.+.... ....|.+.+.++|+|| .+.+.
T Consensus 231 ---~g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V 306 (445)
T 2okc_A 231 ---HGIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV 306 (445)
T ss_dssp ---TTCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---hCCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEE
Confidence 1221 577899998876543 489999998665553311 1124556699999998 77777
Q ss_pred ecC
Q 002345 813 TPN 815 (933)
Q Consensus 813 TPN 815 (933)
+|+
T Consensus 307 ~p~ 309 (445)
T 2okc_A 307 LPD 309 (445)
T ss_dssp EEH
T ss_pred ECC
Confidence 775
No 259
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.46 E-value=2.1e-08 Score=103.43 Aligned_cols=81 Identities=11% Similarity=0.201 Sum_probs=64.5
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+.+++.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|++++. ...++++++
T Consensus 19 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~--------------~~~~v~~~~ 81 (245)
T 1yub_A 19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK--------------LNTRVTLIH 81 (245)
T ss_dssp HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT--------------TCSEEEECC
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc--------------cCCceEEEE
Confidence 445666666677899999999999999999886 789999999999988865431 235799999
Q ss_pred cCccccCCCC-CCccEEEEc
Q 002345 764 GSITVFDSRL-HGFDIGTCL 782 (933)
Q Consensus 764 GDaedLp~~~-~sFDlVVc~ 782 (933)
+|+.++++.. +.| .|+++
T Consensus 82 ~D~~~~~~~~~~~f-~vv~n 100 (245)
T 1yub_A 82 QDILQFQFPNKQRY-KIVGN 100 (245)
T ss_dssp SCCTTTTCCCSSEE-EEEEE
T ss_pred CChhhcCcccCCCc-EEEEe
Confidence 9999987653 578 56664
No 260
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.44 E-value=5.8e-07 Score=94.19 Aligned_cols=90 Identities=14% Similarity=0.230 Sum_probs=67.2
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
-.+.+++.+...++.+|||||||+|.++..|++.+. .+|+|+|+|+.|++.++++ ...++++
T Consensus 19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~----------------~~~~v~~ 80 (249)
T 3ftd_A 19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSI----------------GDERLEV 80 (249)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTS----------------CCTTEEE
T ss_pred HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhc----------------cCCCeEE
Confidence 345566777767788999999999999999999852 7999999999999999642 1247999
Q ss_pred EEcCccccCCCCCCccEEEEccccccCC
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEVIEHME 789 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eVLEHLp 789 (933)
+++|+..+++.....+.++....-.++.
T Consensus 81 i~~D~~~~~~~~~~~~~~vv~NlPy~i~ 108 (249)
T 3ftd_A 81 INEDASKFPFCSLGKELKVVGNLPYNVA 108 (249)
T ss_dssp ECSCTTTCCGGGSCSSEEEEEECCTTTH
T ss_pred EEcchhhCChhHccCCcEEEEECchhcc
Confidence 9999998876532113344444445554
No 261
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=98.41 E-value=7.6e-07 Score=96.36 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=66.1
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
+...+...++.+|||+|||.|..+..|++..++..+|+|+|+++.+++.+++++.. .+..+++++++|
T Consensus 94 ~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r------------~g~~~v~~~~~D 161 (309)
T 2b9e_A 94 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR------------AGVSCCELAEED 161 (309)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH------------TTCCSEEEEECC
T ss_pred HHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCeEEEEeCC
Confidence 34455566788999999999999998887421126899999999999999988762 345689999999
Q ss_pred ccccCCCC---CCccEEEE
Q 002345 766 ITVFDSRL---HGFDIGTC 781 (933)
Q Consensus 766 aedLp~~~---~sFDlVVc 781 (933)
+.+++... ..||.|++
T Consensus 162 ~~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 162 FLAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp GGGSCTTCGGGTTEEEEEE
T ss_pred hHhcCccccccCCCCEEEE
Confidence 98875432 57999997
No 262
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.35 E-value=4.4e-07 Score=98.06 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=67.2
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+.+++.+...++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.|++.|++++.. .+ .++++++
T Consensus 16 ~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~------------~g-~~v~~v~ 81 (301)
T 1m6y_A 16 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKE------------FS-DRVSLFK 81 (301)
T ss_dssp HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGG------------GT-TTEEEEE
T ss_pred HHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHh------------cC-CcEEEEE
Confidence 3455666666788999999999999999998642 26999999999999999987642 12 5899999
Q ss_pred cCccccCC--C---CCCccEEEEcc
Q 002345 764 GSITVFDS--R---LHGFDIGTCLE 783 (933)
Q Consensus 764 GDaedLp~--~---~~sFDlVVc~e 783 (933)
+|+.+++. . ...||.|++.-
T Consensus 82 ~d~~~l~~~l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 82 VSYREADFLLKTLGIEKVDGILMDL 106 (301)
T ss_dssp CCGGGHHHHHHHTTCSCEEEEEEEC
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEcC
Confidence 99988652 1 15799999743
No 263
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.34 E-value=7.4e-07 Score=95.22 Aligned_cols=74 Identities=16% Similarity=0.272 Sum_probs=59.2
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCC-CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA-LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~-f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
.+.+++.+...++.+|||||||+|.++..|++.+.. ..+|+|||+|+.|++.++++. ..++++
T Consensus 31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----------------~~~v~~ 94 (279)
T 3uzu_A 31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----------------GELLEL 94 (279)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----------------GGGEEE
T ss_pred HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----------------CCCcEE
Confidence 345667776677889999999999999999987620 022999999999999998762 137999
Q ss_pred EEcCccccCCC
Q 002345 762 FDGSITVFDSR 772 (933)
Q Consensus 762 i~GDaedLp~~ 772 (933)
+++|+.++++.
T Consensus 95 i~~D~~~~~~~ 105 (279)
T 3uzu_A 95 HAGDALTFDFG 105 (279)
T ss_dssp EESCGGGCCGG
T ss_pred EECChhcCChh
Confidence 99999988764
No 264
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.28 E-value=6e-07 Score=94.45 Aligned_cols=87 Identities=8% Similarity=0.039 Sum_probs=63.5
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCce--EEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEK--IVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~--VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
.+.+++.+...++.+|||||||+|.++. +.+ + .+ |+|+|+|+.|++.+++++. ...+++
T Consensus 10 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~---~~~~v~avEid~~~~~~a~~~~~--------------~~~~v~ 70 (252)
T 1qyr_A 10 IDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-E---RLDQLTVIELDRDLAARLQTHPF--------------LGPKLT 70 (252)
T ss_dssp HHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T---TCSCEEEECCCHHHHHHHHTCTT--------------TGGGEE
T ss_pred HHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C---CCCeEEEEECCHHHHHHHHHHhc--------------cCCceE
Confidence 3456666666678899999999999999 765 3 45 9999999999999976532 124899
Q ss_pred EEEcCccccCCCC-----CCccEEEEccccccCC
Q 002345 761 LFDGSITVFDSRL-----HGFDIGTCLEVIEHME 789 (933)
Q Consensus 761 fi~GDaedLp~~~-----~sFDlVVc~eVLEHLp 789 (933)
++++|+.++++.. ...|.|+++- -.++.
T Consensus 71 ~i~~D~~~~~~~~~~~~~~~~~~vvsNl-PY~i~ 103 (252)
T 1qyr_A 71 IYQQDAMTFNFGELAEKMGQPLRVFGNL-PYNIS 103 (252)
T ss_dssp EECSCGGGCCHHHHHHHHTSCEEEEEEC-CTTTH
T ss_pred EEECchhhCCHHHhhcccCCceEEEECC-CCCcc
Confidence 9999999876532 1235566553 34554
No 265
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=98.27 E-value=1.1e-06 Score=97.66 Aligned_cols=113 Identities=15% Similarity=0.070 Sum_probs=74.6
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCC---CCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP---CTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~P---r~~~~nVefi~GDaedLp 770 (933)
.+.+|||+|||+|.++..+++..+ ..+|+++|+++.+++.+++++............. ..+..+++++++|+.++.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence 678999999999999999888631 2579999999999999999876321000000000 003335999999997753
Q ss_pred CC-CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 771 SR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 771 ~~-~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
.. ...||+|++.- .. .. ..+.+.+.+.|+|| .++++.
T Consensus 126 ~~~~~~fD~I~lDP-~~----~~-~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 126 AERHRYFHFIDLDP-FG----SP-MEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHSTTCEEEEEECC-SS----CC-HHHHHHHHHHEEEEEEEEEEE
T ss_pred HhccCCCCEEEeCC-CC----CH-HHHHHHHHHhcCCCCEEEEEe
Confidence 22 35799999532 11 11 23445588899999 555554
No 266
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.24 E-value=1.4e-06 Score=93.96 Aligned_cols=98 Identities=12% Similarity=0.135 Sum_probs=64.4
Q ss_pred hcCCCCEEEEEcCC------cChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE-EE
Q 002345 691 KESCATTLVDFGCG------SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL-FD 763 (933)
Q Consensus 691 ~~~~g~rVLDIGCG------tG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef-i~ 763 (933)
...++.+|||+||| +|. ..+++..+...+|+|+|+|+. +. ++++ ++
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v~-----------------~v~~~i~ 112 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------VS-----------------DADSTLI 112 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------BC-----------------SSSEEEE
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------CC-----------------CCEEEEE
Confidence 34567899999994 465 333332211268999999987 11 4677 99
Q ss_pred cCccccCCCCCCccEEEEcccccc--------CC-hhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 764 GSITVFDSRLHGFDIGTCLEVIEH--------ME-EDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 764 GDaedLp~~~~sFDlVVc~eVLEH--------Lp-dD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
+|+.++++. ..||+|++....++ .. .+....+.+.+.++|||| .+++.+...
T Consensus 113 gD~~~~~~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~ 174 (290)
T 2xyq_A 113 GDCATVHTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 174 (290)
T ss_dssp SCGGGCCCS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred CccccCCcc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 999987654 68999999754322 11 112234445699999999 777666543
No 267
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.18 E-value=2.7e-06 Score=94.51 Aligned_cols=111 Identities=11% Similarity=0.082 Sum_probs=75.0
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 771 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~-- 771 (933)
.+++|||||||+|.++..+++++. .+|++||+++.+++.|++.+....... .. ....++++++.+|+.....
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~--~~Vt~VEID~~vie~Ar~~~~~l~~~~---l~-dp~~~rv~vi~~Da~~~L~~~ 261 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDV---LD-NLKGDCYQVLIEDCIPVLKRY 261 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----C---CS-SSEETTEEEEESCHHHHHHHH
T ss_pred CCCEEEEEECChhHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhcccc---cc-ccCCCcEEEEECcHHHHHHhh
Confidence 568999999999999999998873 799999999999999998754210000 00 0011379999999987543
Q ss_pred --CCCCccEEEEcccc-------ccCChhHHHHHHHHH----HHccCCCEEEEEe
Q 002345 772 --RLHGFDIGTCLEVI-------EHMEEDEASQFGNIV----LSSFRPRILIVST 813 (933)
Q Consensus 772 --~~~sFDlVVc~eVL-------EHLpdD~l~aL~eeI----~rlLKPG~LIITT 813 (933)
....||+|++--.- .|+. . ..|.+.+ .++|+||+++++-
T Consensus 262 ~~~~~~fDvII~D~~d~P~~~~p~~L~--t-~eFy~~~~~~~~~~L~pgGilv~q 313 (364)
T 2qfm_A 262 AKEGREFDYVINDLTAVPISTSPEEDS--T-WEFLRLILDLSMKVLKQDGKYFTQ 313 (364)
T ss_dssp HHHTCCEEEEEEECCSSCCCCC----C--H-HHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hccCCCceEEEECCCCcccCcCchhhh--H-HHHHHHHHHHHHhhCCCCcEEEEE
Confidence 25689999986432 1121 1 2333335 8999999555443
No 268
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.16 E-value=5.7e-06 Score=98.67 Aligned_cols=131 Identities=14% Similarity=0.118 Sum_probs=86.0
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCC---------------------------------------
Q 002345 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPT--------------------------------------- 717 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~--------------------------------------- 717 (933)
|+.+.-...++......++.+|||.+||+|.++..++..+.
T Consensus 173 pl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~ 252 (703)
T 3v97_A 173 PIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL 252 (703)
T ss_dssp SSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence 45555555566666555678999999999999987664310
Q ss_pred --CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEEEEEcCccccCCC--CCCccEEEEcccc-ccCC-h
Q 002345 718 --ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDGSITVFDSR--LHGFDIGTCLEVI-EHME-E 790 (933)
Q Consensus 718 --~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~-~nVefi~GDaedLp~~--~~sFDlVVc~eVL-EHLp-d 790 (933)
+..+|+|+|+++.|++.|++++.. .+. ..++|.++|+.++..+ .+.||+|+++==. +.+. .
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~------------agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~ 320 (703)
T 3v97_A 253 AEYSSHFYGSDSDARVIQRARTNARL------------AGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSE 320 (703)
T ss_dssp HHCCCCEEEEESCHHHHHHHHHHHHH------------TTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CC
T ss_pred ccCCccEEEEECCHHHHHHHHHHHHH------------cCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccch
Confidence 013799999999999999988752 233 3599999999987443 3389999997322 1121 1
Q ss_pred hHHHHHHHH---HHHccCCC-EEEEEecCCchh
Q 002345 791 DEASQFGNI---VLSSFRPR-ILIVSTPNYEYN 819 (933)
Q Consensus 791 D~l~aL~ee---I~rlLKPG-~LIITTPN~efN 819 (933)
.....+.+. +.+.+.|| .++|-|++.++.
T Consensus 321 ~~l~~ly~~l~~~lk~~~~g~~~~ilt~~~~l~ 353 (703)
T 3v97_A 321 PALIALHSLLGRIMKNQFGGWNLSLFSASPDLL 353 (703)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEESCHHHH
T ss_pred hHHHHHHHHHHHHHHhhCCCCeEEEEeCCHHHH
Confidence 222222222 44445578 888888876543
No 269
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=98.13 E-value=1.6e-06 Score=97.59 Aligned_cols=76 Identities=16% Similarity=0.122 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CC-
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS- 771 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL-p~- 771 (933)
.+.+|||+|||+|..+..|++.+ .+|+|||+|+.|++.|++++.... .+..+++++++|+.+. +.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g---~~V~~VD~s~~~l~~Ar~N~~~~~----------~gl~~i~~i~~Da~~~L~~~ 159 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLLL----------NEGKDVNILTGDFKEYLPLI 159 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTC---SEEEEEESCHHHHHHHHHHHHHHS----------CTTCEEEEEESCGGGSHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHhHHHhc----------cCCCcEEEEECcHHHhhhhc
Confidence 37899999999999999999886 799999999999999998875310 0235899999999874 22
Q ss_pred CCCCccEEEEc
Q 002345 772 RLHGFDIGTCL 782 (933)
Q Consensus 772 ~~~sFDlVVc~ 782 (933)
....||+|++.
T Consensus 160 ~~~~fDvV~lD 170 (410)
T 3ll7_A 160 KTFHPDYIYVD 170 (410)
T ss_dssp HHHCCSEEEEC
T ss_pred cCCCceEEEEC
Confidence 23589999993
No 270
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=98.03 E-value=1.2e-05 Score=90.05 Aligned_cols=103 Identities=18% Similarity=0.102 Sum_probs=74.7
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc--EEEEEcCccccC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS--AVLFDGSITVFD 770 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~n--Vefi~GDaedLp 770 (933)
.++.+|||++||+|.++..++...+...+|+++|+++.+++.+++++.. .+..+ ++++++|+.++.
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~------------Ngl~~~~v~v~~~Da~~~l 118 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKL------------NNIPEDRYEIHGMEANFFL 118 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHH------------TTCCGGGEEEECSCHHHHH
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH------------hCCCCceEEEEeCCHHHHH
Confidence 4578999999999999998887421126899999999999999998762 23333 999999987643
Q ss_pred C--CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002345 771 S--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 771 ~--~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITT 813 (933)
. ....||+|++.- ...+ ..+.+.+.+.|+|| .++++.
T Consensus 119 ~~~~~~~fD~V~lDP--~g~~----~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 119 RKEWGFGFDYVDLDP--FGTP----VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp HSCCSSCEEEEEECC--SSCC----HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhhCCCCcEEEECC--CcCH----HHHHHHHHHHhCCCCEEEEEe
Confidence 2 245799999864 1111 12445688899999 555544
No 271
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=98.03 E-value=6.9e-06 Score=95.17 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=82.2
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcC----CCC-------------CceEEEEeCChHHHHHHHHHHhhhhhcc
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDY----PTA-------------LEKIVGVDISQKSLSRAAKIIHSKLSKK 746 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~----g~~-------------f~~VtGVDIS~emLe~ArkrL~a~ls~~ 746 (933)
+++++.+....+.+|||.|||+|.++..+++. ... ...++|+|+++.+++.|+.++.-
T Consensus 159 ~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l----- 233 (541)
T 2ar0_A 159 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL----- 233 (541)
T ss_dssp HHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT-----
T ss_pred HHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH-----
Confidence 44556666667789999999999999776643 100 13799999999999999876531
Q ss_pred cccCCCCCCCc-----cEEEEEcCccccC-CCCCCccEEEEccccccCC------------hhHHHHHHHHHHHccCCC-
Q 002345 747 LDAAVPCTDVK-----SAVLFDGSITVFD-SRLHGFDIGTCLEVIEHME------------EDEASQFGNIVLSSFRPR- 807 (933)
Q Consensus 747 ~~~~~Pr~~~~-----nVefi~GDaedLp-~~~~sFDlVVc~eVLEHLp------------dD~l~aL~eeI~rlLKPG- 807 (933)
.+.. .+.+.++|....+ .....||+|+++--+.... .+....|.+.+.+.|+||
T Consensus 234 -------~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gG 306 (541)
T 2ar0_A 234 -------HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG 306 (541)
T ss_dssp -------TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred -------hCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCC
Confidence 1222 2678899986643 2356899999965433221 111235566699999998
Q ss_pred EEEEEecC
Q 002345 808 ILIVSTPN 815 (933)
Q Consensus 808 ~LIITTPN 815 (933)
.+.+.+|+
T Consensus 307 r~a~V~p~ 314 (541)
T 2ar0_A 307 RAAVVVPD 314 (541)
T ss_dssp EEEEEEEH
T ss_pred EEEEEecC
Confidence 77777775
No 272
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.84 E-value=1.8e-05 Score=83.92 Aligned_cols=97 Identities=9% Similarity=-0.038 Sum_probs=68.4
Q ss_pred HHHHHHhhcCCC--CEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC-C-ccE
Q 002345 684 EYALQHIKESCA--TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD-V-KSA 759 (933)
Q Consensus 684 e~Ild~L~~~~g--~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~-~-~nV 759 (933)
+.+.+.+...++ .+|||+|||.|..+..++..+ .+|+|||+++.+.+.+++.+....... ...+ . .++
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g---~~V~~vE~~~~~~~l~~~~l~~a~~~~-----~~~~~l~~~i 147 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADA-----EIGGWLQERL 147 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHT---CCEEEEECCHHHHHHHHHHHHHHHHCT-----TTHHHHHHHE
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHHHhhH-----hhhhhhhcCE
Confidence 345556655556 899999999999999999887 589999999998777766554211100 0011 2 479
Q ss_pred EEEEcCcccc-CCCCCCccEEEEccccccC
Q 002345 760 VLFDGSITVF-DSRLHGFDIGTCLEVIEHM 788 (933)
Q Consensus 760 efi~GDaedL-p~~~~sFDlVVc~eVLEHL 788 (933)
+++++|+.++ ......||+|++.-...+-
T Consensus 148 ~~~~~D~~~~L~~~~~~fDvV~lDP~y~~~ 177 (258)
T 2oyr_A 148 QLIHASSLTALTDITPRPQVVYLDPMFPHK 177 (258)
T ss_dssp EEEESCHHHHSTTCSSCCSEEEECCCCCCC
T ss_pred EEEECCHHHHHHhCcccCCEEEEcCCCCCc
Confidence 9999999874 3223479999997766653
No 273
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.80 E-value=0.00011 Score=85.41 Aligned_cols=122 Identities=15% Similarity=0.098 Sum_probs=82.2
Q ss_pred HHHHHHhh----cCCCCEEEEEcCCcChHHHHHhcCC--CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 684 EYALQHIK----ESCATTLVDFGCGSGSLLDSLLDYP--TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 684 e~Ild~L~----~~~g~rVLDIGCGtG~fL~~LAr~g--~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
+++++.+. ...+.+|+|.+||+|.++..++++- .....++|+|+++.++..|+.++.- . .....
T Consensus 207 ~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l--~--------gi~~~ 276 (542)
T 3lkd_A 207 KLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMIL--H--------GVPIE 276 (542)
T ss_dssp HHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHH--T--------TCCGG
T ss_pred HHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHH--c--------CCCcC
Confidence 34455554 3467799999999999987776541 0126899999999999999876531 1 01124
Q ss_pred cEEEEEcCcccc--C-CCCCCccEEEEcccc--c---------------c--CC---hhHHHHHHHHHHHccC-CC-EEE
Q 002345 758 SAVLFDGSITVF--D-SRLHGFDIGTCLEVI--E---------------H--ME---EDEASQFGNIVLSSFR-PR-ILI 810 (933)
Q Consensus 758 nVefi~GDaedL--p-~~~~sFDlVVc~eVL--E---------------H--Lp---dD~l~aL~eeI~rlLK-PG-~LI 810 (933)
++.+.++|.... + .....||+|+++==+ . + ++ .... +|.+.+.+.|+ || .+.
T Consensus 277 ~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~-~Fl~~~l~~Lk~~gGr~a 355 (542)
T 3lkd_A 277 NQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADF-AFLLHGYYHLKQDNGVMA 355 (542)
T ss_dssp GEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHH-HHHHHHHHTBCTTTCEEE
T ss_pred ccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhH-HHHHHHHHHhCCCceeEE
Confidence 789999998765 2 345789999985110 0 0 11 1122 45667999999 98 777
Q ss_pred EEecCC
Q 002345 811 VSTPNY 816 (933)
Q Consensus 811 ITTPN~ 816 (933)
+.+|+.
T Consensus 356 ~VlP~g 361 (542)
T 3lkd_A 356 IVLPHG 361 (542)
T ss_dssp EEEETH
T ss_pred EEecch
Confidence 778863
No 274
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=97.79 E-value=9.3e-05 Score=80.17 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=80.3
Q ss_pred cCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-
Q 002345 692 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 770 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp- 770 (933)
...+++||=||-|.|..++.++++. +..+|+.|||++.+++.|++.+...... ....++++++.+|+...-
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~-------~~~dpRv~v~~~Dg~~~l~ 152 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAG-------SYDDPRFKLVIDDGVNFVN 152 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTT-------GGGCTTEEEEESCTTTTTS
T ss_pred CCCCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCcccccc-------ccCCCcEEEEechHHHHHh
Confidence 3467899999999999999999986 4689999999999999998876432110 123568999999998743
Q ss_pred CCCCCccEEEEccc-----cccCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 771 SRLHGFDIGTCLEV-----IEHMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 771 ~~~~sFDlVVc~eV-----LEHLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
.....||+|+.-.. -.++-.. .|.+.+.+.|+||+++++
T Consensus 153 ~~~~~yDvIi~D~~dp~~~~~~L~t~---eFy~~~~~~L~p~Gv~v~ 196 (294)
T 3o4f_A 153 QTSQTFDVIISDCTDPIGPGESLFTS---AFYEGCKRCLNPGGIFVA 196 (294)
T ss_dssp CSSCCEEEEEESCCCCCCTTCCSSCC---HHHHHHHHTEEEEEEEEE
T ss_pred hccccCCEEEEeCCCcCCCchhhcCH---HHHHHHHHHhCCCCEEEE
Confidence 34578999997432 2233212 344569999999955553
No 275
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.61 E-value=0.00064 Score=69.93 Aligned_cols=106 Identities=8% Similarity=0.004 Sum_probs=71.6
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC--CccEE
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD--VKSAV 760 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~--~~nVe 760 (933)
.+++...+. +.++||||||| .-+..|++.. ..+|+.||.+++..+.|++.+... +. ..+|+
T Consensus 21 ~~~L~~~l~--~a~~VLEiGtG--ySTl~lA~~~--~g~VvtvE~d~~~~~~ar~~l~~~-----------g~~~~~~I~ 83 (202)
T 3cvo_A 21 AEALRMAYE--EAEVILEYGSG--GSTVVAAELP--GKHVTSVESDRAWARMMKAWLAAN-----------PPAEGTEVN 83 (202)
T ss_dssp HHHHHHHHH--HCSEEEEESCS--HHHHHHHTST--TCEEEEEESCHHHHHHHHHHHHHS-----------CCCTTCEEE
T ss_pred HHHHHHHhh--CCCEEEEECch--HHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCCCceE
Confidence 344443333 57899999995 5666666642 279999999999999999887631 11 45899
Q ss_pred EEEcCcccc---------------C--------C-CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 761 LFDGSITVF---------------D--------S-RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 761 fi~GDaedL---------------p--------~-~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
++.||+.+. + . ..+.||+|+.-.-- ....+. .+.+.|+||++||.
T Consensus 84 ~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k------~~~~~~-~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 84 IVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF------RVGCAL-ATAFSITRPVTLLF 152 (202)
T ss_dssp EEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS------HHHHHH-HHHHHCSSCEEEEE
T ss_pred EEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC------chhHHH-HHHHhcCCCeEEEE
Confidence 999997542 1 1 13679999987631 112333 36789999955543
No 276
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=97.59 E-value=5e-05 Score=90.52 Aligned_cols=106 Identities=10% Similarity=0.091 Sum_probs=67.1
Q ss_pred CCEEEEEcCCcChHHHHHhcCC--C----------CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYP--T----------ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g--~----------~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi 762 (933)
...|||||||+|-+....++.+ . ...+|+|||.++.++...+.+... +-...|+++
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~N------------g~~d~VtVI 477 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVR------------TWKRRVTII 477 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHH------------TTTTCSEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhc------------CCCCeEEEE
Confidence 4589999999999964322111 0 114899999999777655544321 123469999
Q ss_pred EcCccccCCC-----CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 763 DGSITVFDSR-----LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 763 ~GDaedLp~~-----~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
++|++++..+ ...+|+||+=..=..+..+........+.+.||||+++|+
T Consensus 478 ~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP 532 (745)
T 3ua3_A 478 ESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIP 532 (745)
T ss_dssp ESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEES
T ss_pred eCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEEC
Confidence 9999998653 5789999984332222211111222346789999966653
No 277
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.59 E-value=7.6e-05 Score=86.71 Aligned_cols=120 Identities=11% Similarity=-0.030 Sum_probs=77.9
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCC--------------CCceEEEEeCChHHHHHHHHHHhhhhhccccc
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPT--------------ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA 749 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~--------------~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~ 749 (933)
+++++.+....+ +|||.+||+|.++..++++-. ....++|+|+++.+++.|+.++.- .
T Consensus 235 ~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l--~----- 306 (544)
T 3khk_A 235 TLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVI--R----- 306 (544)
T ss_dssp HHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHH--T-----
T ss_pred HHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHH--h-----
Confidence 445555554443 999999999999877643210 015799999999999999876531 1
Q ss_pred CCCCCCCccEEEEEcCccccC-CCCCCccEEEEcccccc-------------------------CCh---hHHHHHHHHH
Q 002345 750 AVPCTDVKSAVLFDGSITVFD-SRLHGFDIGTCLEVIEH-------------------------MEE---DEASQFGNIV 800 (933)
Q Consensus 750 ~~Pr~~~~nVefi~GDaedLp-~~~~sFDlVVc~eVLEH-------------------------Lpd---D~l~aL~eeI 800 (933)
+...++.+.++|....+ .....||+|+++=-+.. +++ ... .|.+.+
T Consensus 307 ----gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~-~Fl~~~ 381 (544)
T 3khk_A 307 ----GIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANF-AWMLHM 381 (544)
T ss_dssp ----TCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHH-HHHHHH
T ss_pred ----CCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhH-HHHHHH
Confidence 11123444778876544 34578999999532211 211 112 456679
Q ss_pred HHccCCC-EEEEEecCC
Q 002345 801 LSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 801 ~rlLKPG-~LIITTPN~ 816 (933)
.+.|+|| .+.+.+|+.
T Consensus 382 l~~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 382 LYHLAPTGSMALLLANG 398 (544)
T ss_dssp HHTEEEEEEEEEEEETH
T ss_pred HHHhccCceEEEEecch
Confidence 9999998 777888873
No 278
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=97.55 E-value=0.00017 Score=85.47 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=66.5
Q ss_pred CCEEEEEcCCcChHHHHHh---cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 695 ATTLVDFGCGSGSLLDSLL---DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LA---r~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
...|||||||+|-+....+ +.++...+|++||-++ |...|++...+. +-...|++++||++++..
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N-----------~~~dkVtVI~gd~eev~L 425 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFE-----------EWGSQVTVVSSDMREWVA 425 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHH-----------TTGGGEEEEESCTTTCCC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhc-----------cCCCeEEEEeCcceeccC
Confidence 3579999999999854333 3222123789999997 555666655431 234579999999999876
Q ss_pred CCCCccEEEEcc-----ccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 772 RLHGFDIGTCLE-----VIEHMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 772 ~~~sFDlVVc~e-----VLEHLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
+ .++|+||+=. .-|.++ ..+ ....++||||+++|+
T Consensus 426 P-EKVDIIVSEwMG~fLl~E~ml----evL-~Ardr~LKPgGimiP 465 (637)
T 4gqb_A 426 P-EKADIIVSELLGSFADNELSP----ECL-DGAQHFLKDDGVSIP 465 (637)
T ss_dssp S-SCEEEEECCCCBTTBGGGCHH----HHH-HHHGGGEEEEEEEES
T ss_pred C-cccCEEEEEcCcccccccCCH----HHH-HHHHHhcCCCcEEcc
Confidence 5 6899999822 122222 222 336789999976664
No 279
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.51 E-value=0.00075 Score=75.35 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=57.9
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.++.+|||+||+.|.++..|++++ .+|+|||+.+ |-... . ..++|+++++|+......
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~rg---~~V~aVD~~~-l~~~l----~--------------~~~~V~~~~~d~~~~~~~ 267 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKRN---MWVYSVDNGP-MAQSL----M--------------DTGQVTWLREDGFKFRPT 267 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT---CEEEEECSSC-CCHHH----H--------------TTTCEEEECSCTTTCCCC
T ss_pred CCCCEEEEeCcCCCHHHHHHHHCC---CEEEEEEhhh-cChhh----c--------------cCCCeEEEeCccccccCC
Confidence 478999999999999999999998 6999999874 21111 1 235899999999988777
Q ss_pred CCCccEEEEcccc
Q 002345 773 LHGFDIGTCLEVI 785 (933)
Q Consensus 773 ~~sFDlVVc~eVL 785 (933)
...||+|+|-++.
T Consensus 268 ~~~~D~vvsDm~~ 280 (375)
T 4auk_A 268 RSNISWMVCDMVE 280 (375)
T ss_dssp SSCEEEEEECCSS
T ss_pred CCCcCEEEEcCCC
Confidence 7789999998775
No 280
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=97.50 E-value=9.7e-05 Score=79.39 Aligned_cols=118 Identities=9% Similarity=0.046 Sum_probs=71.6
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
.+..+.+.....++.+|||+|||.|.++..+++.. +...++|+|++.++..... . . .....++..
T Consensus 62 KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi------~------~--~~~g~~ii~ 126 (277)
T 3evf_A 62 KLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPM------N------V--QSLGWNIIT 126 (277)
T ss_dssp HHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCC------C------C--CBTTGGGEE
T ss_pred HHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCccccc------c------c--CcCCCCeEE
Confidence 44445555333466799999999999999887653 2367899999855310000 0 0 000124555
Q ss_pred EEcCccccCCCCCCccEEEEccccccCCh---hHH--HHHHHHHHHccCCC-EE-EEEecC
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEVIEHMEE---DEA--SQFGNIVLSSFRPR-IL-IVSTPN 815 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eVLEHLpd---D~l--~aL~eeI~rlLKPG-~L-IITTPN 815 (933)
+++++....+....||+|+|....+ ... |.. ..+.+.+.++|+|| .- ++-+-.
T Consensus 127 ~~~~~dv~~l~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 127 FKDKTDIHRLEPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp EECSCCTTTSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred EeccceehhcCCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 6776655556677899999987655 321 111 12345678999998 44 444433
No 281
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.49 E-value=0.00014 Score=78.46 Aligned_cols=79 Identities=16% Similarity=0.248 Sum_probs=63.2
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+.+++.+...++..+||.+||.|..+..|++.+ .+|+|+|.++.+++.|++ +. . .++++++
T Consensus 12 ~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~---g~VigiD~Dp~Ai~~A~~-L~-------------~--~rv~lv~ 72 (285)
T 1wg8_A 12 QEALDLLAVRPGGVYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKG-LH-------------L--PGLTVVQ 72 (285)
T ss_dssp HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHH-TC-------------C--TTEEEEE
T ss_pred HHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCC---CEEEEEeCCHHHHHHHHh-hc-------------c--CCEEEEE
Confidence 345566666678899999999999999999874 699999999999999987 53 1 4899999
Q ss_pred cCccccCC-----CCCCccEEEE
Q 002345 764 GSITVFDS-----RLHGFDIGTC 781 (933)
Q Consensus 764 GDaedLp~-----~~~sFDlVVc 781 (933)
+++.+++. ....||.|++
T Consensus 73 ~~f~~l~~~L~~~g~~~vDgIL~ 95 (285)
T 1wg8_A 73 GNFRHLKRHLAALGVERVDGILA 95 (285)
T ss_dssp SCGGGHHHHHHHTTCSCEEEEEE
T ss_pred CCcchHHHHHHHcCCCCcCEEEe
Confidence 99987642 1246787776
No 282
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.46 E-value=0.00081 Score=81.47 Aligned_cols=117 Identities=11% Similarity=0.095 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCC--CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPT--ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~--~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp- 770 (933)
.+.+|||.|||+|.++..+++..+ ...+++|+|+++.+++.|+.++....... ..+.....+...|+....
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~L------lhGi~~~~I~~dD~L~~~~ 394 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQL------VSSNNAPTITGEDVCSLNP 394 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTT------CBTTBCCEEECCCGGGCCG
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhh------hcCCCcceEEecchhcccc
Confidence 467999999999999999887642 12579999999999999944332111000 112223455666666532
Q ss_pred CCCCCccEEEEcccc-c-cCCh-------------------------hHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 771 SRLHGFDIGTCLEVI-E-HMEE-------------------------DEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 771 ~~~~sFDlVVc~eVL-E-HLpd-------------------------D~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
.....||+|+++==. . .-.+ +....|.+.+.++|+|| .+.+-+|+.
T Consensus 395 ~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s 468 (878)
T 3s1s_A 395 EDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ 468 (878)
T ss_dssp GGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred cccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence 235689999995322 1 1110 11234566789999998 888888873
No 283
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=97.39 E-value=0.00039 Score=59.83 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=49.9
Q ss_pred CCCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002345 14 MKLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (933)
Q Consensus 14 ~~~tpka~~~q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~g 93 (933)
+.-+||.++++- ...-.|++.+.. | |...| .|.|.+.+.+.. .+|.-+-||+|||.||+.||++|.
T Consensus 2 ~~knp~s~L~E~-~~~p~Y~~~~~~-----G------p~h~~-~F~~~v~v~~~~-~~G~G~SKK~Aeq~AA~~al~~L~ 67 (71)
T 2b7v_A 2 SGKNPVMILNEL-RPGLKYDFLSES-----G------ESHAK-SFVMSVVVDGQF-FEGSGRNKKLAKARAAQSALATVF 67 (71)
T ss_dssp CSSCHHHHHHHH-CCSCEEEEEECC-----C------CTTTC-CEEEEEECSSCE-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHh-CCCCEEEEEEeE-----C------CCCCc-eEEEEEEECCEE-EEEeeCCHHHHHHHHHHHHHHHHH
Confidence 456899999886 455678764321 1 22233 899999998864 489999999999999999999873
No 284
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=97.36 E-value=0.00047 Score=60.22 Aligned_cols=69 Identities=22% Similarity=0.135 Sum_probs=52.4
Q ss_pred cCCCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002345 13 KMKLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (933)
Q Consensus 13 ~~~~tpka~~~q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~ 92 (933)
++.-+|...++|+- ..-.|++.+... |...| .|.|.+.+.+... +|.-+-||.|||.||+.||++|
T Consensus 4 ~~~K~pl~~L~q~~-~~p~Y~~~~~~G-----------p~H~~-~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L 69 (75)
T 3p1x_A 4 KHGKNPVMELNEKR-RGLKYELISETG-----------GSHDK-RFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKL 69 (75)
T ss_dssp --CCCHHHHHHHHS-TTCCEEEEEEES-----------CTTSC-EEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcC-CCCEEEEEEeeC-----------CCCCc-eEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHH
Confidence 56678999999985 567887754321 23344 8899888887655 8999999999999999999999
Q ss_pred CCC
Q 002345 93 GID 95 (933)
Q Consensus 93 g~~ 95 (933)
+-+
T Consensus 70 ~~~ 72 (75)
T 3p1x_A 70 FPD 72 (75)
T ss_dssp CTT
T ss_pred Hcc
Confidence 753
No 285
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=97.25 E-value=0.00063 Score=62.43 Aligned_cols=78 Identities=15% Similarity=0.116 Sum_probs=57.1
Q ss_pred cccccccCCCChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHH
Q 002345 7 SVVAVRKMKLTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQS 83 (933)
Q Consensus 7 ~~~~~~~~~~tpka~~~---q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~ 83 (933)
+.+|...+...||-.++ |+.|..-.|++.+.. | |.--| .|.|.+.+.+..+.+|.=+-||+|||.
T Consensus 5 ~~~m~~~~~~n~Kt~LqE~~Q~~~~~p~Y~~~~~~-----G------p~H~~-~F~v~v~i~g~~~~~G~G~SKK~Aeq~ 72 (97)
T 1x49_A 5 SSGMASDTPGFYMDKLNKYRQMHGVAITYKELSTS-----G------PPHDR-RFTFQVLIDEKEFPEAKGRSKQEARNA 72 (97)
T ss_dssp CCSSSCCCTTHHHHHHHHHHHHHTCCEEEEEEEEE-----S------CSSSC-EEEEEEEESSCCCCCEEESSHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHHHHHcCCCCeEEEEEee-----C------CCCCC-cEEEEEEECCEEEEEEeeCCHHHHHHH
Confidence 45677667778998875 455555688764321 1 22233 899999998866667888999999999
Q ss_pred HHHHHHHHcCCCC
Q 002345 84 AAEKALEKLGIDP 96 (933)
Q Consensus 84 aa~~al~k~g~~~ 96 (933)
||+.||++|+-..
T Consensus 73 AA~~AL~~L~~~~ 85 (97)
T 1x49_A 73 AAKLAVDILDNEN 85 (97)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998543
No 286
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}
Probab=97.19 E-value=0.0002 Score=71.69 Aligned_cols=82 Identities=20% Similarity=0.216 Sum_probs=70.5
Q ss_pred CCCceeEeecCCCCCCccC-CCCcEEEEEEEEEEEE-eCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccc
Q 002345 562 PEHGIYCLSIGGPDSGIYP-SNGCLSFISYSVSLVI-EGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACF 639 (933)
Q Consensus 562 ~~~~~~~~~i~~~d~~~~p-~~gs~~~i~y~~~l~~-~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff 639 (933)
.++++....|+.+++-.-| .+|+.|.+||+.+|.+ +|+.++++.+++++|+|.+|++.|+.-++..|..|++|.-+.+
T Consensus 8 ~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~~~ 87 (165)
T 2lkn_A 8 REDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIAQF 87 (165)
T ss_dssp HTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSSCSCSHHHHHHTTCCTTCEEEE
T ss_pred cCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCCCccHHHHHHHhcCccCceEEE
Confidence 3456777777777765433 5899999999999986 5899999999999999999999999999999999999999998
Q ss_pred cccCCc
Q 002345 640 CKELPP 645 (933)
Q Consensus 640 ~r~lP~ 645 (933)
. +|+
T Consensus 88 ~--ipp 91 (165)
T 2lkn_A 88 L--CDI 91 (165)
T ss_dssp E--CCH
T ss_pred E--ECH
Confidence 8 554
No 287
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=97.18 E-value=0.00022 Score=76.84 Aligned_cols=118 Identities=12% Similarity=0.118 Sum_probs=69.0
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002345 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 761 (933)
Q Consensus 682 Rve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVef 761 (933)
.+..+.+.....++.+|||+|||.|.++..+++.. +...|+|+|++..+...+... ...+ .++..
T Consensus 78 KL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~~-------------~~~g-~~ii~ 142 (282)
T 3gcz_A 78 KLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIMR-------------TTLG-WNLIR 142 (282)
T ss_dssp HHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCC-------------CBTT-GGGEE
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCcccccccc-------------ccCC-CceEE
Confidence 34445454434467799999999999999887543 246899999987642222100 0011 23333
Q ss_pred EEcCccccCCCCCCccEEEEccccccCCh---hHH--HHHHHHHHHccCCC---EEEEEecC
Q 002345 762 FDGSITVFDSRLHGFDIGTCLEVIEHMEE---DEA--SQFGNIVLSSFRPR---ILIVSTPN 815 (933)
Q Consensus 762 i~GDaedLp~~~~sFDlVVc~eVLEHLpd---D~l--~aL~eeI~rlLKPG---~LIITTPN 815 (933)
...++.........+|+|+|-+... ... |.. ..+.+.+..+|+|| .+++-+-.
T Consensus 143 ~~~~~dv~~l~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 143 FKDKTDVFNMEVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp EECSCCGGGSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred eeCCcchhhcCCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 3433333334567899999988766 332 111 12345567889887 44444433
No 288
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.12 E-value=0.00079 Score=66.64 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCcC-hHHHHHhc-CCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 680 KQRVEYALQHIKESCATTLVDFGCGSG-SLLDSLLD-YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 680 ~qRve~Ild~L~~~~g~rVLDIGCGtG-~fL~~LAr-~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
+.-.+++.+... .+.+|||||||.| ..+..|++ .+ ..|+++|+++..++
T Consensus 23 e~LaeYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g---~~V~atDInp~Av~------------------------ 73 (153)
T 2k4m_A 23 NDLAVYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSK---VDLVLTDIKPSHGG------------------------ 73 (153)
T ss_dssp HHHHHHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSC---CEEEEECSSCSSTT------------------------
T ss_pred HHHHHHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCC---CeEEEEECCccccc------------------------
Confidence 334455544432 4579999999999 69999997 66 78999999986442
Q ss_pred cEEEEEcCccccCCCC-CCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002345 758 SAVLFDGSITVFDSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 817 (933)
Q Consensus 758 nVefi~GDaedLp~~~-~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~e 817 (933)
+++.|+.+..... ..||+|.++.-=.-| ...+.+ +++.+.- -++|.+...+
T Consensus 74 ---~v~dDiF~P~~~~Y~~~DLIYsirPP~El----~~~i~~-lA~~v~a-dliI~pL~~E 125 (153)
T 2k4m_A 74 ---IVRDDITSPRMEIYRGAALIYSIRPPAEI----HSSLMR-VADAVGA-RLIIKPLTGE 125 (153)
T ss_dssp ---EECCCSSSCCHHHHTTEEEEEEESCCTTT----HHHHHH-HHHHHTC-EEEEECBTTB
T ss_pred ---eEEccCCCCcccccCCcCEEEEcCCCHHH----HHHHHH-HHHHcCC-CEEEEcCCCC
Confidence 5667887644322 489999887542222 223333 5544432 6666666544
No 289
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=97.07 E-value=0.00099 Score=60.11 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=48.5
Q ss_pred ccCCCChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHH
Q 002345 12 RKMKLTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKA 88 (933)
Q Consensus 12 ~~~~~tpka~~~---q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~a 88 (933)
..+.-+||-.++ |+.|..-.|++.+... |.-.| .|.|.+.+.+. +.+|.-+-||+|||.||+.|
T Consensus 10 ~~~~kd~Ks~LqE~~q~~~~~p~Y~~~~~~G-----------p~H~~-~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~a 76 (90)
T 3llh_A 10 ANPGKTPISLLQEYGTRIGKTPVYDLLKAEG-----------QAHQP-NFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVA 76 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTCCCEEEEEEEC----------------C-CEEEEEEETTE-EEEEEESSHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHhcCCCCEEEEEEeEC-----------CCCCC-cEEEEEEECCE-EEEEEeCCHHHHHHHHHHHH
Confidence 456678998875 5667677897642211 22223 68888888775 56799999999999999999
Q ss_pred HHHcCC
Q 002345 89 LEKLGI 94 (933)
Q Consensus 89 l~k~g~ 94 (933)
|++|+-
T Consensus 77 L~~L~~ 82 (90)
T 3llh_A 77 LKHLKG 82 (90)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 999974
No 290
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=97.06 E-value=0.00081 Score=58.55 Aligned_cols=69 Identities=23% Similarity=0.179 Sum_probs=49.5
Q ss_pred ccCCCChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHH
Q 002345 12 RKMKLTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKA 88 (933)
Q Consensus 12 ~~~~~tpka~~~---q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~a 88 (933)
..+...||-.++ |+-|-.-.|++.+. .| |...| .|.|.+.+.+ .+-+|.=+-||+|||.||+.|
T Consensus 3 ~~~~~d~ks~LqE~~q~~~~~p~Y~~~~~-----~G------p~h~~-~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~a 69 (76)
T 1ekz_A 3 EGDKKSPISQVHEIGIKRNMTVHFKVLRE-----EG------PAHMK-NFITACIVGS-IVTEGEGNGKKVSKKRAAEKM 69 (76)
T ss_dssp CCCCSCHHHHHHHHHHHTTCCCEEEESSS-----CC------SSSCS-CSSEEEEETT-EEEEECCCSTTSSSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCCEEEEEEe-----EC------CCCCC-cEEEEEEECC-EEEEEeeCCHHHHHHHHHHHH
Confidence 345568888875 44454467876321 11 22233 6888888888 666699999999999999999
Q ss_pred HHHcC
Q 002345 89 LEKLG 93 (933)
Q Consensus 89 l~k~g 93 (933)
|++|+
T Consensus 70 L~~L~ 74 (76)
T 1ekz_A 70 LVELQ 74 (76)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99986
No 291
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=97.02 E-value=0.0021 Score=58.53 Aligned_cols=68 Identities=19% Similarity=0.086 Sum_probs=52.5
Q ss_pred cCCCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002345 13 KMKLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (933)
Q Consensus 13 ~~~~tpka~~~q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~ 92 (933)
...-+|.--+.|+-+ .-.|++.+... |.--| .|.|.+.+.+... +|.=+-||+|||.||+.||++|
T Consensus 14 ~~~K~~LqEl~Qk~~-~p~Y~~v~~~G-----------p~H~~-~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L 79 (91)
T 2l33_A 14 KHGKNPVMELNEKRR-GLKYELISETG-----------GSHDK-RFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKL 79 (91)
T ss_dssp SSTTCHHHHHHHHCS-SCEEEEEEEEE-----------CSSCE-EEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCC-CCeEEEEEeeC-----------CCCCC-eEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHH
Confidence 344577778888888 77898754321 22233 8999999998654 8999999999999999999999
Q ss_pred CC
Q 002345 93 GI 94 (933)
Q Consensus 93 g~ 94 (933)
+-
T Consensus 80 ~~ 81 (91)
T 2l33_A 80 FP 81 (91)
T ss_dssp CC
T ss_pred hh
Confidence 74
No 292
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=97.01 E-value=0.0036 Score=69.78 Aligned_cols=122 Identities=11% Similarity=0.084 Sum_probs=72.0
Q ss_pred CCEEEEEcCCcChHHHHHh--------cC------CCCCceEEEEeCChHHHHHHHHHHhhhhhccc-ccCCCCC--CCc
Q 002345 695 ATTLVDFGCGSGSLLDSLL--------DY------PTALEKIVGVDISQKSLSRAAKIIHSKLSKKL-DAAVPCT--DVK 757 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LA--------r~------g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~-~~~~Pr~--~~~ 757 (933)
..+|+|+|||+|..+..+. +. ..+-.+|+.-|+-...-..--+.+........ +...+.. +.-
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 4789999999999887661 11 01236788888877654333233321100000 0000000 001
Q ss_pred cEEEEEcCccccCCCCCCccEEEEccccccCChh------------------------------------HHHHHHHHHH
Q 002345 758 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEED------------------------------------EASQFGNIVL 801 (933)
Q Consensus 758 nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD------------------------------------~l~aL~eeI~ 801 (933)
-+.-+-|+.-...++.++||+|+++.+|||+... +...|.+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233344555556778999999999999999721 2334566789
Q ss_pred HccCCC-EEEEEecCC
Q 002345 802 SSFRPR-ILIVSTPNY 816 (933)
Q Consensus 802 rlLKPG-~LIITTPN~ 816 (933)
+.|+|| .++++++..
T Consensus 213 ~eL~pGG~mvl~~~gr 228 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGR 228 (374)
T ss_dssp HHEEEEEEEEEEEEEC
T ss_pred HHhCCCCEEEEEEecC
Confidence 999999 777777743
No 293
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Probab=97.00 E-value=0.00093 Score=60.70 Aligned_cols=74 Identities=28% Similarity=0.411 Sum_probs=64.9
Q ss_pred eeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 566 IYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 566 ~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
+....++.+++...|..|+.|.|+|++++. +|+.+++..+++++|+|.+|.+.|..-++..|..|++|....+.
T Consensus 2 l~~~~~~~G~g~~~~~~gd~V~v~y~~~~~-dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ 75 (107)
T 2ppn_A 2 VQVETISPGDGRTFPKRGQTCVVHYTGMLE-DGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75 (107)
T ss_dssp EEEEEEECCCSSCCCCTTCEEEEEEEEEET-TSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEE
T ss_pred cEEEEEECcCCCcCCCCCCEEEEEEEEEEC-CCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEE
Confidence 455667777777779999999999999987 59888888777789999999999999999999999999988876
No 294
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=96.97 E-value=0.0007 Score=71.57 Aligned_cols=118 Identities=11% Similarity=-0.036 Sum_probs=67.0
Q ss_pred CCCEEEEEcCCcChHHHHHhcC-------CCC----CceEEEEeCCh---HHHHHH-----------HHHHhhhhh---c
Q 002345 694 CATTLVDFGCGSGSLLDSLLDY-------PTA----LEKIVGVDISQ---KSLSRA-----------AKIIHSKLS---K 745 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~-------g~~----f~~VtGVDIS~---emLe~A-----------rkrL~a~ls---~ 745 (933)
+..+|||||+|+|..+..+++. .+. ..+++++|..+ +++..| ++.+..... .
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4569999999999988765542 211 14899999876 565543 333321000 0
Q ss_pred ccccCCCCCCCccEEEEEcCccc-cCCCC----CCccEEEEcc-ccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 746 KLDAAVPCTDVKSAVLFDGSITV-FDSRL----HGFDIGTCLE-VIEHMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 746 ~~~~~~Pr~~~~nVefi~GDaed-Lp~~~----~sFDlVVc~e-VLEHLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
..... -..+..+++++.||+.+ ++... ..||+|+.-. .-...++--...+.+.++++|+||.++++
T Consensus 140 ~~r~~-~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLL-LDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEE-EC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhhee-ccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 00000 01123578999999987 33222 2799999853 22222210012344569999999966664
No 295
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=96.96 E-value=0.0015 Score=73.02 Aligned_cols=112 Identities=10% Similarity=0.056 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC---
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--- 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp--- 770 (933)
++++||=||-|.|..++.+.++.. .+|+.|||++.+++.|++.+....... ......++++++.+|+...-
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~--~~V~~VEIDp~VVe~ar~yfp~~~~~~----~d~pr~~rv~vii~Da~~fl~~~ 278 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDV----LDNLKGDCYQVLIEDCIPVLKRY 278 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----C----CSSSEETTEEEEESCHHHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHhcCC--ceeEEEccCHHHHHHHHhhchhhhhhh----hccccccceeeehHHHHHHHHhh
Confidence 568999999999999999999863 799999999999999988653211000 00112346899999986542
Q ss_pred -CCCCCccEEEEcccc-------ccCChhH--HHHHHHHHHHccCCCEEEEE
Q 002345 771 -SRLHGFDIGTCLEVI-------EHMEEDE--ASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 771 -~~~~sFDlVVc~eVL-------EHLpdD~--l~aL~eeI~rlLKPG~LIIT 812 (933)
.....||+|+.-..- .+.. .. ...|.+.+.+.|+||+++++
T Consensus 279 ~~~~~~yDvIIvDl~D~~~s~~p~g~a-~~Lft~eFy~~~~~~L~p~GVlv~ 329 (381)
T 3c6k_A 279 AKEGREFDYVINDLTAVPISTSPEEDS-TWEFLRLILDLSMKVLKQDGKYFT 329 (381)
T ss_dssp HHHTCCEEEEEEECCSSCCCCC----C-HHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred hhccCceeEEEECCCCCcccCcccCcc-hHHHHHHHHHHHHHhcCCCCEEEE
Confidence 234679999974221 1111 11 13444568999999966664
No 296
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=96.92 E-value=0.0012 Score=70.33 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=45.5
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhh
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 741 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a 741 (933)
+.++.... .++..|||++||+|..+..+++.+ .+++|+|+++.+++.|++++..
T Consensus 226 ~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g---~~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 226 ERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWG---RRALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp HHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHH
Confidence 34444443 467899999999999999999988 6999999999999999998764
No 297
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=96.90 E-value=0.0022 Score=57.19 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=49.7
Q ss_pred CCChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHH
Q 002345 15 KLTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEK 91 (933)
Q Consensus 15 ~~tpka~~~---q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k 91 (933)
...||-.++ |+.+..-.|++.+.. | |..-| .|.|.+.+.+ .+.+|.-+-||+|||.||+.||++
T Consensus 7 ~~d~Ks~LqE~~q~~~~~p~Y~~~~~~-----G------p~h~~-~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~ 73 (84)
T 2dix_A 7 GKTPIQVLHEYGMKTKNIPVYECERSD-----V------QIHVP-TFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINI 73 (84)
T ss_dssp CCCHHHHHHHHHHHTTCCCEEEEEEEE-----C------SSSSC-EEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEEeE-----C------CCCCC-eEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHH
Confidence 357888765 455655688875332 1 22334 8999999988 667799999999999999999999
Q ss_pred cC
Q 002345 92 LG 93 (933)
Q Consensus 92 ~g 93 (933)
|+
T Consensus 74 L~ 75 (84)
T 2dix_A 74 LK 75 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 96
No 298
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=96.89 E-value=0.0027 Score=57.29 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=50.1
Q ss_pred CCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHH
Q 002345 15 KLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALE 90 (933)
Q Consensus 15 ~~tpka~~~---q~~g~~-~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~ 90 (933)
...||-+++ |+.+-. -.|++.+... |...| .|.|.+.+.+. +..|.-+-||+|||.||+.||+
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~G-----------p~H~~-~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~ 71 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLSERG-----------MPRRR-EFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLL 71 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEES-----------CSTTC-EEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEEeEC-----------CCCCC-eEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHH
Confidence 357888775 555654 5898753321 22233 79999999885 6679999999999999999999
Q ss_pred HcCC
Q 002345 91 KLGI 94 (933)
Q Consensus 91 k~g~ 94 (933)
+|+-
T Consensus 72 ~L~~ 75 (89)
T 1uhz_A 72 QLGY 75 (89)
T ss_dssp HHTS
T ss_pred HHhc
Confidence 9974
No 299
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=96.87 E-value=0.0014 Score=62.75 Aligned_cols=89 Identities=19% Similarity=0.257 Sum_probs=74.5
Q ss_pred cccccccccccCCCCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhh
Q 002345 550 LQANSINTLNAIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTA 629 (933)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVt 629 (933)
+..++--........++....++.++ |.-|..|..|.|+|++++ .+|+.+++..+++++|+|.+|.+.|..-++..|.
T Consensus 14 ~~~~~~~~~~~~~~~gl~~~~l~~G~-G~~~~~gd~V~v~Y~g~~-~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~ 91 (133)
T 2y78_A 14 LVPRGSHMTVVTTESGLKYEDLTEGS-GAEARAGQTVSVHYTGWL-TDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQ 91 (133)
T ss_dssp SGGGTTTTCCEECTTSCEEEEEECCS-SCBCCTTSEEEEEEEEEE-TTSCEEEETTTTTCCEEEETTSSSSCHHHHHHST
T ss_pred ceecccCCCcEECCCCEEEEEEEcCC-CCCCCCCCEEEEEEEEEE-CCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHc
Confidence 34445555566667788888888776 578999999999999998 4588888777778899999999999999999999
Q ss_pred hccccCCcccc
Q 002345 630 QMSVGQSACFC 640 (933)
Q Consensus 630 q~reGqsiff~ 640 (933)
.|++|....+.
T Consensus 92 gmk~Ge~~~v~ 102 (133)
T 2y78_A 92 GMKVGGVRRLT 102 (133)
T ss_dssp TCBTTCEEEEE
T ss_pred CCCCCCEEEEE
Confidence 99999988877
No 300
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1
Probab=96.87 E-value=0.0013 Score=60.56 Aligned_cols=77 Identities=26% Similarity=0.425 Sum_probs=66.6
Q ss_pred CCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 563 EHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 563 ~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
..++....++.+++-..|..|+.|.|+|++++. +|+.+++..+++++|+|.+|.+.|..-++..|..|++|....+.
T Consensus 5 ~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~-dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~ 81 (113)
T 1yat_A 5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLE-NGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT 81 (113)
T ss_dssp GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEET-TSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEE
T ss_pred CCCeEEEEEECCCCcccCCCCCEEEEEEEEEEC-CCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEE
Confidence 346777777777776679999999999999984 58887777776789999999999999999999999999999877
No 301
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=96.84 E-value=0.0036 Score=70.13 Aligned_cols=108 Identities=12% Similarity=0.017 Sum_probs=69.0
Q ss_pred CCEEEEEcCCcChHHHHHhcC--------C--------CCCceEEEEeCC-----------hHHHHHHHHHHhhhhhccc
Q 002345 695 ATTLVDFGCGSGSLLDSLLDY--------P--------TALEKIVGVDIS-----------QKSLSRAAKIIHSKLSKKL 747 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~--------g--------~~f~~VtGVDIS-----------~emLe~ArkrL~a~ls~~~ 747 (933)
..+|+|+|||+|..+..+... . .+-.+|+.-|+. +.+.+.+++..
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~-------- 124 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN-------- 124 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT--------
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhc--------
Confidence 568999999999988655432 1 133678999987 33333322210
Q ss_pred ccCCCCCCCccEEEEEcC---ccccCCCCCCccEEEEccccccCChhH--------------------------H-----
Q 002345 748 DAAVPCTDVKSAVLFDGS---ITVFDSRLHGFDIGTCLEVIEHMEEDE--------------------------A----- 793 (933)
Q Consensus 748 ~~~~Pr~~~~nVefi~GD---aedLp~~~~sFDlVVc~eVLEHLpdD~--------------------------l----- 793 (933)
+...+..|+.|. +-...++.++||+|+++.+|||+...+ .
T Consensus 125 ------g~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~ 198 (384)
T 2efj_A 125 ------GRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLD 198 (384)
T ss_dssp ------CCCTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHH
T ss_pred ------cCCCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHH
Confidence 111123455544 344567789999999999999986321 0
Q ss_pred ------HHHHHHHHHccCCC-EEEEEecCC
Q 002345 794 ------SQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 794 ------~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
..|++..++.|+|| .++++++..
T Consensus 199 Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~gr 228 (384)
T 2efj_A 199 QFTKDFTTFLRIHSEELISRGRMLLTFICK 228 (384)
T ss_dssp HHHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEEecC
Confidence 12345568999999 888888754
No 302
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=96.84 E-value=0.0014 Score=55.90 Aligned_cols=63 Identities=25% Similarity=0.355 Sum_probs=45.6
Q ss_pred hHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002345 18 PKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (933)
Q Consensus 18 pka~~~---q~~g~~-~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~g 93 (933)
||-.++ |+-|-. -.|++.+.. | |...| .|.|.+.+.+. +-+|.-+-||+|||.||+.||++|+
T Consensus 2 p~s~LqE~~q~~~~~~p~Y~~~~~~-----G------p~h~~-~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQES-----G------PPHKR-EFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEE-----S------CGGGC-EEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeE-----C------CCCCC-eEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 555543 555554 478764321 1 12233 89999999996 7779999999999999999999985
No 303
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}
Probab=96.80 E-value=0.0013 Score=62.73 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=69.8
Q ss_pred ccCCCCceeEe--ecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCC
Q 002345 559 NAIPEHGIYCL--SIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQS 636 (933)
Q Consensus 559 ~~~~~~~~~~~--~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqs 636 (933)
+.....++.+. .++.+++..+|..|+.|.|+|++++. +|+.+++..+++++|+|.+|.+.|..-++..|..|++|..
T Consensus 17 ~~~~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~-dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~ 95 (130)
T 2lgo_A 17 QGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFP-DGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEK 95 (130)
T ss_dssp CSSSSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECT-TSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEE
T ss_pred ceeCCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEEC-CCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCE
Confidence 44456677777 88888877779999999999999984 5888888777778999999999999999999999999998
Q ss_pred cccc
Q 002345 637 ACFC 640 (933)
Q Consensus 637 iff~ 640 (933)
..+.
T Consensus 96 ~~v~ 99 (130)
T 2lgo_A 96 ALFT 99 (130)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8776
No 304
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=96.79 E-value=0.0019 Score=56.29 Aligned_cols=66 Identities=21% Similarity=0.306 Sum_probs=47.8
Q ss_pred ChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002345 17 TPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (933)
Q Consensus 17 tpka~~~---q~~g~~-~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~ 92 (933)
.||-.++ |+.|.. -.|++.+.. | |..-| .|.|.+.+.+-.+.+|.=+-||+|||.||+.||++|
T Consensus 5 n~Kt~LqE~~q~~~~~~p~Y~~~~~~-----G------p~h~~-~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L 72 (76)
T 3adj_A 5 LCKNLLQEYAQKMNYAIPLYQCQKVE-----T------LGRVT-QFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAI 72 (76)
T ss_dssp HHHHHHHHHHHTTTCCCCEEEEEEEE-----C------SSSCE-EEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEeecc-----C------CCCCC-cEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 4666654 555554 478764322 1 22233 899999998866667888999999999999999999
Q ss_pred CC
Q 002345 93 GI 94 (933)
Q Consensus 93 g~ 94 (933)
+-
T Consensus 73 ~~ 74 (76)
T 3adj_A 73 QS 74 (76)
T ss_dssp HC
T ss_pred hh
Confidence 63
No 305
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=96.75 E-value=0.0049 Score=55.61 Aligned_cols=66 Identities=21% Similarity=0.322 Sum_probs=49.6
Q ss_pred CCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHH
Q 002345 15 KLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALE 90 (933)
Q Consensus 15 ~~tpka~~~---q~~g~~-~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~ 90 (933)
...||-.++ |+.+-. -.|++.+.. | |...| .|.|.+.+.+. +-+|.-+-||+|||.||+.||+
T Consensus 15 ~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~-----G------p~h~~-~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~ 81 (89)
T 2cpn_A 15 ECNPVGALQELVVQKGWRLPEYTVTQES-----G------PAHRK-EFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLL 81 (89)
T ss_dssp CCCHHHHHHHHHHHHTCCCCEEEEEEEE-----C------CSSSC-EEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeE-----C------CCCCC-eEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHH
Confidence 457888775 455554 578764321 1 22334 89999999996 7779999999999999999999
Q ss_pred HcC
Q 002345 91 KLG 93 (933)
Q Consensus 91 k~g 93 (933)
+|+
T Consensus 82 ~L~ 84 (89)
T 2cpn_A 82 RVS 84 (89)
T ss_dssp HHH
T ss_pred HHH
Confidence 996
No 306
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Probab=96.72 E-value=0.0023 Score=60.52 Aligned_cols=77 Identities=21% Similarity=0.346 Sum_probs=68.6
Q ss_pred CCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 563 EHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 563 ~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
..++....++.+++...|..|+.|.|+|+++|. +|+.+++..+++.+|+|.+|.+.|..-++..|..|++|....+.
T Consensus 18 d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~-dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ 94 (128)
T 3o5q_A 18 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLL 94 (128)
T ss_dssp SSSEEEEEEECCSSSCCCCTTCEEEEEEEEEET-TSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEE
T ss_pred CCCEEEEEEECCCCCccCCCCCEEEEEEEEEEC-CCCEEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEE
Confidence 346777788788877789999999999999986 59888888888899999999999999999999999999988877
No 307
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=96.70 E-value=0.0011 Score=60.57 Aligned_cols=88 Identities=23% Similarity=0.354 Sum_probs=68.9
Q ss_pred CChHHHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHH
Q 002345 101 PSAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTY 180 (933)
Q Consensus 101 ~~~~e~~~~l~~~~~~~f~~~~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~ 180 (933)
|-++|.-+.|+.+|.|-|||+=|.-++=|..|+. ++ -=|.||+++||.+- |+.++.. | ..+
T Consensus 5 ~~~~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m~----~~--~~G~Vpl~~i~sF~-r~k~lt~--------d----~~~ 65 (92)
T 1s29_A 5 PLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKMA----EN--AEGFVSLETLLTFK-RVNSVTT--------D----VKE 65 (92)
T ss_dssp CCCHHHHHHHHHHHHHHTSHHHHTTCHHHHHHHT----TS--TTCCEEHHHHTTSH-HHHTTCS--------C----HHH
T ss_pred CCCHHHHHHHHHHHHhhcchhhhccCHHHHHHhc----cC--CCCCEEhHHHhCCh-hHHHHcC--------C----HHH
Confidence 4567888999999999999998888875555553 33 34899999999873 5555543 2 467
Q ss_pred HHHHhhccCCcEEeecCceeeeecCCCC
Q 002345 181 IMRAATRLSEFVVTSEGQLSIWRKDPYP 208 (933)
Q Consensus 181 ~~~a~~~~~~~~~~s~~~~~~~~~~~~~ 208 (933)
|..|.+.++- |.+++++..|+|..|+|
T Consensus 66 i~~al~~S~~-lev~edg~~VRR~~PlP 92 (92)
T 1s29_A 66 VVEAIRPSEK-LVLSEDGLMVRRRDPLP 92 (92)
T ss_dssp HHHHHTTCSS-EEECTTSSEEEESSCCC
T ss_pred HHHHHhhCCe-EEEeCCCCEEeCCCCCC
Confidence 8888887655 89999999999999997
No 308
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=96.68 E-value=0.0027 Score=57.30 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=51.4
Q ss_pred cCCCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHH
Q 002345 13 KMKLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKA 88 (933)
Q Consensus 13 ~~~~tpka~~~---q~~g~~-~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~a 88 (933)
.....||-.+. |+-|-. -.|++.+.. | |.-.| .|.|.+.+.+. +-+|.-+-||+|||.||+.|
T Consensus 12 ~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~-----G------p~H~~-~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~A 78 (88)
T 3adl_A 12 PRGSHEVGALQELVVQKGWRLPEYTVTQES-----G------PAHRK-EFTMTCRVERF-IEIGSGTSKKLAKRNAAAKM 78 (88)
T ss_dssp CTTCCHHHHHHHHHHHTTCCCCEEEEEEEE-----S------CTTSC-EEEEEEEETTE-EEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCCEEEEEEeE-----C------CCCCC-eEEEEEEECCE-EEEEeeCCHHHHHHHHHHHH
Confidence 45568888875 455554 578774321 1 22234 79999999986 67799999999999999999
Q ss_pred HHHcCC
Q 002345 89 LEKLGI 94 (933)
Q Consensus 89 l~k~g~ 94 (933)
|++|+-
T Consensus 79 L~~L~~ 84 (88)
T 3adl_A 79 LLRVHT 84 (88)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 999974
No 309
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=96.67 E-value=0.0041 Score=58.87 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=52.4
Q ss_pred CCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCC
Q 002345 15 KLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGI 94 (933)
Q Consensus 15 ~~tpka~~~q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~g~ 94 (933)
...||.++. .|-++-.|++.+.. | |.--| .|.|.+.+.+... +|.-+-||+|||.||+.||++|+-
T Consensus 36 ~kd~Ks~LQ-E~~q~p~Y~~v~~~-----G------p~H~k-~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~ 101 (114)
T 2ljh_A 36 PKNTVAMLN-ELRHGLIYKLESQT-----G------PVHAP-LFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQ 101 (114)
T ss_dssp CSCHHHHHH-HHCSCCEEEEEEEE-----C------CSSSC-EEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHH-HHccCCeEEEEEee-----C------CCCCC-eEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHc
Confidence 357887765 45666788775322 1 22233 8999999988766 899999999999999999999986
Q ss_pred CCCC
Q 002345 95 DPSP 98 (933)
Q Consensus 95 ~~~~ 98 (933)
.+..
T Consensus 102 ~~~~ 105 (114)
T 2ljh_A 102 FKDG 105 (114)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 5553
No 310
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=96.65 E-value=0.0012 Score=59.48 Aligned_cols=68 Identities=19% Similarity=0.183 Sum_probs=49.5
Q ss_pred ChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002345 17 TPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (933)
Q Consensus 17 tpka~~~---q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~g 93 (933)
.||-+++ |+-|....|+ ++ .| |.-.|..|.|.+.+.+...-+|.-+-||+|||.||+.||++|+
T Consensus 7 d~Kt~LqE~~Q~~~~~~~Y~-~~------~G------p~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~ 73 (88)
T 1x48_A 7 GYIGLVNSFAQKKKLSVNYE-QC------EP------NSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLL 73 (88)
T ss_dssp CHHHHHHHHHHHTTCCEEEE-EC------CC------SSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCeeE-Ee------eC------CCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHH
Confidence 6787765 4445455776 21 11 2233336999999988666678889999999999999999998
Q ss_pred CCCC
Q 002345 94 IDPS 97 (933)
Q Consensus 94 ~~~~ 97 (933)
-.|.
T Consensus 74 ~~~~ 77 (88)
T 1x48_A 74 KSPP 77 (88)
T ss_dssp HSCC
T ss_pred hcCC
Confidence 7655
No 311
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}
Probab=96.64 E-value=0.0022 Score=60.04 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=68.8
Q ss_pred CCCCceeEeecCCC-CCCccCCCCcEEEEEEEEEEEEeCchhhHHhh--cccceeEeecccccchhhHHhhhhccccCCc
Q 002345 561 IPEHGIYCLSIGGP-DSGIYPSNGCLSFISYSVSLVIEGETMKELLE--SREEFEFEMGTGAVIPQVEVVTAQMSVGQSA 637 (933)
Q Consensus 561 ~~~~~~~~~~i~~~-d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e--~~~~fef~~g~~~~shhLkvlVtq~reGqsi 637 (933)
....++....++.+ +.|.-|..|+.|.|+|+++|..+|+.+++..+ ....|+|.+|.+.|..-++..|..|++|...
T Consensus 9 ~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~~ 88 (125)
T 4dip_A 9 IPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKR 88 (125)
T ss_dssp CCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTCEE
T ss_pred ECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCCEE
Confidence 34567888888644 57899999999999999999856988888775 4589999999999999999999999999988
Q ss_pred ccc
Q 002345 638 CFC 640 (933)
Q Consensus 638 ff~ 640 (933)
.+.
T Consensus 89 ~~~ 91 (125)
T 4dip_A 89 KLI 91 (125)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 312
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=96.64 E-value=0.0043 Score=68.81 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=83.1
Q ss_pred HHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002345 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 765 (933)
Q Consensus 686 Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GD 765 (933)
....+...++.+|||+.+|.|.-+..|+..+. ...|+++|+++.-++..+++++...... .....++.+...|
T Consensus 140 ~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~------~~~~~~v~v~~~D 212 (359)
T 4fzv_A 140 PVLALGLQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEE------IRDGNQVRVTSWD 212 (359)
T ss_dssp HHHHHCCCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTT------TTTSSSEEEECCC
T ss_pred HHHHhCCCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhh------hccCCceEEEeCc
Confidence 34456677889999999999999988888762 3579999999999988888776321100 0123578999999
Q ss_pred ccccCC-CCCCccEEEE----cc----cccc-------CChhH-------HHHHHHHHHHccCCC-EEEEEecC
Q 002345 766 ITVFDS-RLHGFDIGTC----LE----VIEH-------MEEDE-------ASQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 766 aedLp~-~~~sFDlVVc----~e----VLEH-------LpdD~-------l~aL~eeI~rlLKPG-~LIITTPN 815 (933)
...++. ..+.||.|++ +. ++.. ..... ...+.+.+.++|||| .++-+|-.
T Consensus 213 ~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS 286 (359)
T 4fzv_A 213 GRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS 286 (359)
T ss_dssp GGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred hhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence 887643 3568999996 32 2211 11111 123445688999999 66666643
No 313
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=96.56 E-value=0.0022 Score=55.41 Aligned_cols=64 Identities=28% Similarity=0.299 Sum_probs=47.4
Q ss_pred ChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccc-cccchHHHHHHHHHHHH
Q 002345 17 TPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETF-KKKKDAEQSAAEKALEK 91 (933)
Q Consensus 17 tpka~~~---q~~g~~-~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~-~~kkdaeq~aa~~al~k 91 (933)
.||-.++ |+.|-. -.|++.+ +. |...| .|.|.+.+.+..+.+|.= +-||+|||.||+.||++
T Consensus 4 d~Kt~LqE~~q~~~~~~p~Y~~~~--~G----------p~h~~-~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~ 70 (73)
T 3adg_A 4 VFKSRLQEYAQKYKLPTPVYEIVK--EG----------PSHKS-LFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRE 70 (73)
T ss_dssp SHHHHHHHHHHHTTCCCCEEEEEE--ES----------STTSC-EEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEe--EC----------CCCCC-eEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHH
Confidence 4666654 555655 4787764 21 23344 899999998866667887 89999999999999999
Q ss_pred cC
Q 002345 92 LG 93 (933)
Q Consensus 92 ~g 93 (933)
|+
T Consensus 71 L~ 72 (73)
T 3adg_A 71 LA 72 (73)
T ss_dssp HT
T ss_pred hh
Confidence 85
No 314
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1
Probab=96.54 E-value=0.0033 Score=60.06 Aligned_cols=78 Identities=23% Similarity=0.383 Sum_probs=68.8
Q ss_pred CCCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 562 PEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 562 ~~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
...++....++.+++...|..|+.|.|+|+.++. +|+-+++..++...|+|.+|.+.|..-++..|..|++|....+.
T Consensus 12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~-dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ 89 (135)
T 1r9h_A 12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLE-NGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFT 89 (135)
T ss_dssp CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEET-TSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEE
T ss_pred CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEEC-CCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEE
Confidence 3457888888888776789999999999999984 59888888887899999999999999999999999999988877
No 315
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=96.54 E-value=0.0021 Score=55.59 Aligned_cols=65 Identities=26% Similarity=0.331 Sum_probs=46.8
Q ss_pred CChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002345 16 LTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (933)
Q Consensus 16 ~tpka~~~---q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~ 92 (933)
..||-.++ |+ ...-.|++.+.. | |...| .|.|.+.+.+... +|.-+-||+|||.||+.||++|
T Consensus 4 ~d~Ks~Lqe~~q~-~~~p~Y~~~~~~-----G------p~h~~-~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L 69 (73)
T 2b7t_A 4 VLPKNALMQLNEI-KPGLQYMLLSQT-----G------PVHAP-LFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSF 69 (73)
T ss_dssp SSSHHHHHHHHHH-CSCCEEEEEEEE-----C------SSSSC-EEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcC-CCCceEEEEEee-----C------CCCCC-eEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHH
Confidence 35666654 44 334578764321 1 22334 8999999998664 8999999999999999999998
Q ss_pred CC
Q 002345 93 GI 94 (933)
Q Consensus 93 g~ 94 (933)
..
T Consensus 70 ~~ 71 (73)
T 2b7t_A 70 VQ 71 (73)
T ss_dssp HT
T ss_pred hc
Confidence 64
No 316
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*
Probab=96.51 E-value=0.0024 Score=59.17 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=65.7
Q ss_pred CceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhc-------ccceeEeecccccchhhHHhhhhccccCC
Q 002345 564 HGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLES-------REEFEFEMGTGAVIPQVEVVTAQMSVGQS 636 (933)
Q Consensus 564 ~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~-------~~~fef~~g~~~~shhLkvlVtq~reGqs 636 (933)
.++....++.+++...|..|+.|.|+|+++|. +|+.+++..+. ..+|+|.+|.+.|..-++..|..|++|..
T Consensus 4 ~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~-dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~ 82 (119)
T 3kz7_A 4 PKYTKSILKKGDKTNFPKKGDVVHCWYTGTLP-DGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEK 82 (119)
T ss_dssp CSEEEEEEECCCSSCCCCTTCEEEEEEEEECT-TSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTCE
T ss_pred CccEEEEEEcCCCCCcCCCCCEEEEEEEEEEC-CCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCCE
Confidence 46777888888887899999999999999985 48777666542 48999999999999999999999999998
Q ss_pred cccc
Q 002345 637 ACFC 640 (933)
Q Consensus 637 iff~ 640 (933)
..+.
T Consensus 83 ~~v~ 86 (119)
T 3kz7_A 83 ARLE 86 (119)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8877
No 317
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=96.48 E-value=0.0048 Score=68.54 Aligned_cols=110 Identities=11% Similarity=0.083 Sum_probs=75.4
Q ss_pred CCEEEEEcCCcChHHHHHhcC---------------CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002345 695 ATTLVDFGCGSGSLLDSLLDY---------------PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~---------------g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV 759 (933)
.-+|+|+||++|..+..+... ..+-.+|+..|+........-+.+.... ... +.
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~---------~~~--~~ 120 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN---------DVD--GV 120 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC---------SCT--TC
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc---------ccC--CC
Confidence 457999999999877655433 2234689999998888877755443110 001 22
Q ss_pred EEEE---cCccccCCCCCCccEEEEccccccCChh-------------------------------HHHHHHHHHHHccC
Q 002345 760 VLFD---GSITVFDSRLHGFDIGTCLEVIEHMEED-------------------------------EASQFGNIVLSSFR 805 (933)
Q Consensus 760 efi~---GDaedLp~~~~sFDlVVc~eVLEHLpdD-------------------------------~l~aL~eeI~rlLK 805 (933)
.|.. |++-...++.+++|+|+++.+|||+..- +...|++..++.|+
T Consensus 121 ~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~ 200 (359)
T 1m6e_X 121 CFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV 200 (359)
T ss_dssp EEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC
T ss_pred EEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444 4555567788999999999999998631 12345666799999
Q ss_pred CC-EEEEEecC
Q 002345 806 PR-ILIVSTPN 815 (933)
Q Consensus 806 PG-~LIITTPN 815 (933)
|| .++++++.
T Consensus 201 pGG~mvl~~~g 211 (359)
T 1m6e_X 201 PGGRMVLTILG 211 (359)
T ss_dssp TTCEEEEEEEE
T ss_pred CCceEEEEEec
Confidence 99 77777764
No 318
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=96.48 E-value=0.0034 Score=57.49 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=51.7
Q ss_pred cCCCChHhHH---HHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHH
Q 002345 13 KMKLTPKAII---VQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKAL 89 (933)
Q Consensus 13 ~~~~tpka~~---~q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al 89 (933)
.....||-.+ .|+. ..-.|++.+.. | |..-| .|.|.+.+.+... +|.=+-||+|||.||+.||
T Consensus 13 ~~~~d~Kt~LqE~~Q~~-~~p~Y~~~~~~-----G------p~H~~-~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL 78 (97)
T 2dmy_A 13 SKAIDLMNALMRLNQIR-PGLQYKLLSQS-----G------PVHAP-VFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVL 78 (97)
T ss_dssp CCSSSCTHHHHHHHHHS-CSCCCEEEEEE-----S------CSSSC-EEEEEEEETTEEE-EEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcC-CCceEEEEEee-----C------CCCCC-eEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHH
Confidence 3445688776 4664 34568765332 1 22234 8999999988665 8999999999999999999
Q ss_pred HHcCCCCC
Q 002345 90 EKLGIDPS 97 (933)
Q Consensus 90 ~k~g~~~~ 97 (933)
++|+.+..
T Consensus 79 ~~L~~~~~ 86 (97)
T 2dmy_A 79 QAMGYPTG 86 (97)
T ss_dssp HHHTCCCS
T ss_pred HHhCCCCc
Confidence 99997443
No 319
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A
Probab=96.47 E-value=0.0027 Score=61.44 Aligned_cols=77 Identities=21% Similarity=0.346 Sum_probs=68.5
Q ss_pred CCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 563 EHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 563 ~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
..++....++.+++...|..|+.|.|+|+++|. +|+.+++..+++.+|+|.+|.+.|..-++..|..|++|....+.
T Consensus 34 d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~-dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ 110 (144)
T 3o5e_A 34 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLL 110 (144)
T ss_dssp SSSEEEEEEECCBSSCCCCTTCEEEEEEEEECT-TSCEEEESGGGTSCEEEETTSSSSCHHHHHHHTTCCBTCEEEEE
T ss_pred CCeEEEEEEECCCCCccCCCCCEEEEEEEEEEC-CCCEEEeecccCCCeEEEeCCCcccHHHHHHHhCCCCCCEEEEE
Confidence 446777778778877799999999999999986 49888888888899999999999999999999999999988877
No 320
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}
Probab=96.45 E-value=0.002 Score=64.82 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=69.7
Q ss_pred cCCCCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeeccc-ccchhhHHhhhhccccCCcc
Q 002345 560 AIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTG-AVIPQVEVVTAQMSVGQSAC 638 (933)
Q Consensus 560 ~~~~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~-~~shhLkvlVtq~reGqsif 638 (933)
.....++....++.++ |..|..|+.|.|+|+++|..+|+.+++..+++..|+|.+|.+ .|..-++..|..|++|....
T Consensus 45 ~~~~~gl~~~vl~~G~-G~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge~~~ 123 (180)
T 2f4e_A 45 EVLDEKVSKQIIKEGH-GSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERAL 123 (180)
T ss_dssp EEEETTEEEEEEECCB-SCCBCTTCEEEEEEEEEETTTCCEEEETTTTTCCEEEETTSCCGGGHHHHHHHTTCCBTCEEE
T ss_pred EECCCceEEEEEeCCC-CCCCCCCCEEEEEEEEEECCCCcEEeccCccCCCEEEEeCCCCchhHHHHHHHhCCCCCCEEE
Confidence 3445577777787776 458999999999999999877998888888889999999999 89999999999999999988
Q ss_pred cc
Q 002345 639 FC 640 (933)
Q Consensus 639 f~ 640 (933)
+.
T Consensus 124 v~ 125 (180)
T 2f4e_A 124 VH 125 (180)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 321
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A
Probab=96.43 E-value=0.0042 Score=58.57 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=63.3
Q ss_pred eEeecCCC-C-CCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 567 YCLSIGGP-D-SGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 567 ~~~~i~~~-d-~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
+...++.+ + +|.-|..|+.|.|+|+++|..+|+.+++..+++.+|+|.+|.+.|..-++..|..|++|....+.
T Consensus 19 ~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~~~~p~~f~lG~g~~i~g~e~~l~gm~~Ge~~~v~ 94 (129)
T 2vn1_A 19 IKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVR 94 (129)
T ss_dssp EEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGGTTCCEEEETTSSSSCHHHHHHHTTCCTTCEEEEE
T ss_pred EEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCCCCccEEEEeCCCCcCHHHHHHHhCCCCCCEEEEE
Confidence 33445544 4 48999999999999999984569888888887899999999999999999999999999998877
No 322
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}
Probab=96.39 E-value=0.0015 Score=62.42 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=61.1
Q ss_pred CCCCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 561 IPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 561 ~~~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
....++....++.++ |.-|..|+.|.|+|+.+|..+|+.+++..+++.+|+|.+|++.|..-++..|..|++|....+.
T Consensus 23 ~~~~gl~~~vl~~G~-g~~~~~gd~V~v~Y~g~l~~~G~~fdss~~~~~p~~f~lG~g~~i~G~e~aL~gm~~Ge~~~v~ 101 (134)
T 3b7x_A 23 SGDRGVLKDVIREGA-GDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFL 101 (134)
T ss_dssp SSSSSEEEEEEECCE-EEECCTTCEEEEEEEEECTTCSSCSEEC-------CEEC-CCCCCHHHHHHHHTCEETCEEEEE
T ss_pred eCCCCEEEEEEEcCC-CCCCCCCCEEEEEEEEEECCCCeEEEecCCCCCCEEEEcCCcchhHHHHHHHhCCCCCCEEEEE
Confidence 345678888888776 4567789999999999987669888887777889999999999999999999999999988776
No 323
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=96.35 E-value=0.0064 Score=56.28 Aligned_cols=69 Identities=28% Similarity=0.292 Sum_probs=48.6
Q ss_pred cCCCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccc-cccchHHHHHHHH
Q 002345 13 KMKLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETF-KKKKDAEQSAAEK 87 (933)
Q Consensus 13 ~~~~tpka~~~---q~~g~~-~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~-~~kkdaeq~aa~~ 87 (933)
++...||-.++ |+.|.. -.|++.+ + | |..-| .|.|.+.+.+..+.+|.- +-||+|||.||+.
T Consensus 14 ~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~--~----G------p~H~~-~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~ 80 (103)
T 2l2n_A 14 SNCYVFKSRLQEYAQKYKLPTPVYEIVK--E----G------PSHKS-LFQSTVILDGVRYNSLPGFFNRKAAEQSAAEV 80 (103)
T ss_dssp -----CTTHHHHHHHHTTCCCCEEEEEE--E----S------CSSSC-EEEEEEEETTEEEECCSCBSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEe--E----c------CCCCC-eEEEEEEECCEEEEEeecCCCHHHHHHHHHHH
Confidence 44556777664 566655 4898764 2 2 22334 899999999876677887 8999999999999
Q ss_pred HHHHcCC
Q 002345 88 ALEKLGI 94 (933)
Q Consensus 88 al~k~g~ 94 (933)
||++|+-
T Consensus 81 AL~~L~~ 87 (103)
T 2l2n_A 81 ALRELAK 87 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999973
No 324
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=96.33 E-value=0.0046 Score=67.17 Aligned_cols=118 Identities=8% Similarity=0.039 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhhc-CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 679 SKQRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 679 y~qRve~Ild~L~~-~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
....+..+.+. .. .++.+|||+||+.|.++..+++.. ....|+|+|+...+...... ....+..
T Consensus 66 aa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~-------------~~~~~~~ 130 (300)
T 3eld_A 66 GAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIH-------------MQTLGWN 130 (300)
T ss_dssp THHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCC-------------CCBTTGG
T ss_pred HHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEecccccccccc-------------ccccCCc
Confidence 33344455555 33 367899999999999999999764 24689999998643111100 0000111
Q ss_pred cEEEEEcCccccCCCCCCccEEEEccccccCChh---HH--HHHHHHHHHccCCC-EEEEEe
Q 002345 758 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEED---EA--SQFGNIVLSSFRPR-ILIVST 813 (933)
Q Consensus 758 nVefi~GDaedLp~~~~sFDlVVc~eVLEHLpdD---~l--~aL~eeI~rlLKPG-~LIITT 813 (933)
-+.+. .++....+....+|+|+|-..-. .... .. ..+.+.+..+|+|| +-++.-
T Consensus 131 iv~~~-~~~di~~l~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 131 IVKFK-DKSNVFTMPTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp GEEEE-CSCCTTTSCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred eEEee-cCceeeecCCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 23333 22222233457899999976554 3311 11 22355567899998 555544
No 325
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=96.26 E-value=0.0063 Score=57.30 Aligned_cols=64 Identities=23% Similarity=0.217 Sum_probs=46.0
Q ss_pred ChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecC----Cce-eeeccccccchHHHHHHHHH
Q 002345 17 TPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLP----EFS-VVSETFKKKKDAEQSAAEKA 88 (933)
Q Consensus 17 tpka~~~---q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp----~~~-v~~~~~~~kkdaeq~aa~~a 88 (933)
.||-.++ |+-|..-.|+|+|. | |.--| .|.|.+.+. +.. +.+|.-+-||+|||.||+.|
T Consensus 27 d~Kt~LqE~~Qk~~~~p~Y~~~~~------G------p~H~~-~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~A 93 (113)
T 1uil_A 27 NAKARLNQYFQKEKIQGEYKYTQV------G------PDHNR-SFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSL 93 (113)
T ss_dssp HHHHHHHHHHHHSCCCCCCEEEEE------S------CSTTC-EEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCeEEEeeE------C------CCCCC-cEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHH
Confidence 6777765 56565667875431 1 23334 888888886 444 44588999999999999999
Q ss_pred HHHcC
Q 002345 89 LEKLG 93 (933)
Q Consensus 89 l~k~g 93 (933)
|++|.
T Consensus 94 L~~L~ 98 (113)
T 1uil_A 94 VRQLY 98 (113)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 326
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=96.20 E-value=0.0069 Score=58.33 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=51.2
Q ss_pred CCCChHhHHH---HhccCce-eEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccc-cccchHHHHHHHHH
Q 002345 14 MKLTPKAIIV---QKFGRNA-QFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETF-KKKKDAEQSAAEKA 88 (933)
Q Consensus 14 ~~~tpka~~~---q~~g~~~-~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~-~~kkdaeq~aa~~a 88 (933)
....||-++. |+-|... .|++.+. . -.| .|.|.+.+.+...-+|.= +-||+|||.||+.|
T Consensus 24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~----~----------H~~-~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~A 88 (128)
T 1whn_A 24 PQITPKMCLLEWCRREKLPQPVYETVQR----T----------IDR-MFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVC 88 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEEC----S----------SSC-CEEEEEEETTEEEEESSCBSSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCCCCCeEEEEee----c----------CCC-cEEEEEEECCEEEEEEeccCCHHHHHHHHHHHH
Confidence 3467888775 4555543 7877643 1 122 799999998876667888 99999999999999
Q ss_pred HHHcCCCC
Q 002345 89 LEKLGIDP 96 (933)
Q Consensus 89 l~k~g~~~ 96 (933)
|++|+...
T Consensus 89 L~~L~~~~ 96 (128)
T 1whn_A 89 LRSQGLPE 96 (128)
T ss_dssp HHHHTCSS
T ss_pred HHHHhccc
Confidence 99998643
No 327
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=96.20 E-value=0.017 Score=66.92 Aligned_cols=121 Identities=13% Similarity=0.186 Sum_probs=77.7
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCcChHHHHHhc----CCCC--------CceEEEEeCChHHHHHHHHHHhhhhhcccccC
Q 002345 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLD----YPTA--------LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA 750 (933)
Q Consensus 683 ve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr----~g~~--------f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~ 750 (933)
++++++.+....+.+|+|-.||+|.|+....+ .... ...++|+|+++.+...|+-++- +.
T Consensus 206 v~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~--lh------ 277 (530)
T 3ufb_A 206 VRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL--LH------ 277 (530)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH--HH------
T ss_pred HHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH--hc------
Confidence 45677777777788999999999999875543 1110 1369999999999999975542 11
Q ss_pred CCCCCCccEEEEEcCccccCC----CCCCccEEEEcccc---------ccCC-----hhHHHHHHHHHHHccC-------
Q 002345 751 VPCTDVKSAVLFDGSITVFDS----RLHGFDIGTCLEVI---------EHME-----EDEASQFGNIVLSSFR------- 805 (933)
Q Consensus 751 ~Pr~~~~nVefi~GDaedLp~----~~~sFDlVVc~eVL---------EHLp-----dD~l~aL~eeI~rlLK------- 805 (933)
+.....+..+|....+. ....||+|+++==+ ..++ .+..-+|.+.+.+.|+
T Consensus 278 ----g~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~ 353 (530)
T 3ufb_A 278 ----GLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSD 353 (530)
T ss_dssp ----TCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSS
T ss_pred ----CCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccC
Confidence 22234567777655432 23479999995322 1111 1122345556778886
Q ss_pred CC-EEEEEecC
Q 002345 806 PR-ILIVSTPN 815 (933)
Q Consensus 806 PG-~LIITTPN 815 (933)
|| .+.|.+|+
T Consensus 354 ~gGr~avVlP~ 364 (530)
T 3ufb_A 354 NGGRAAVVVPN 364 (530)
T ss_dssp SCCEEEEEEEH
T ss_pred CCceEEEEecc
Confidence 56 77777775
No 328
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=96.19 E-value=0.0023 Score=57.29 Aligned_cols=38 Identities=24% Similarity=0.187 Sum_probs=33.8
Q ss_pred eEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCC
Q 002345 57 LYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGI 94 (933)
Q Consensus 57 ~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~g~ 94 (933)
.|.|.+.+.+-.+.+|.-+-||+|||.||+.||++|+-
T Consensus 39 ~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 39 TYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNF 76 (85)
T ss_dssp CEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhH
Confidence 79999999886666788999999999999999999864
No 329
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=96.12 E-value=0.012 Score=58.79 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=49.5
Q ss_pred ChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002345 17 TPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (933)
Q Consensus 17 tpka~~~---q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~g 93 (933)
-||-+++ |+.|..-.|++.+ +. | |..-| .|.|.+.+.+..+.+|.-+-||+|||.||+.||++|.
T Consensus 14 n~ks~LqE~~q~~~~~p~Y~~~~--~~------G---p~h~~-~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~ 81 (179)
T 1qu6_A 14 FFMEELNTYRQKQGVVLKYQELP--NS------G---PPHDR-RFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILN 81 (179)
T ss_dssp SHHHHHHHHHHHHTCCCEEEEEE--SC------B---TTTBC-CEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCeEEEee--cc------C---CCCCC-eEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 4777764 5666667786542 11 1 22223 7999999988766678889999999999999999997
Q ss_pred CCC
Q 002345 94 IDP 96 (933)
Q Consensus 94 ~~~ 96 (933)
-.+
T Consensus 82 ~~~ 84 (179)
T 1qu6_A 82 KEK 84 (179)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
No 330
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=96.09 E-value=0.019 Score=61.74 Aligned_cols=104 Identities=10% Similarity=0.007 Sum_probs=68.8
Q ss_pred CCCCEEEEEcCCcChHHHHHhcC----CCCCceEEEEeCChH--------------------------HHHHHHHHHhhh
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDY----PTALEKIVGVDISQK--------------------------SLSRAAKIIHSK 742 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~----g~~f~~VtGVDIS~e--------------------------mLe~ArkrL~a~ 742 (933)
..+..|||+|+..|.-+..++.. +.+..+|+++|..+. .++.+++++.+
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~- 183 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN- 183 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH-
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH-
Confidence 45789999999999987766532 101268999996421 35667766652
Q ss_pred hhcccccCCCCCC--CccEEEEEcCcccc-CC-CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 743 LSKKLDAAVPCTD--VKSAVLFDGSITVF-DS-RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 743 ls~~~~~~~Pr~~--~~nVefi~GDaedL-p~-~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
.+ ..+|+++.||+.+. +. ....||+|..-.- ........| +.+...|+||.+||.
T Consensus 184 -----------~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~y~~~~~~L-e~~~p~L~pGGiIv~ 242 (282)
T 2wk1_A 184 -----------YDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---LYESTWDTL-TNLYPKVSVGGYVIV 242 (282)
T ss_dssp -----------TTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---SHHHHHHHH-HHHGGGEEEEEEEEE
T ss_pred -----------cCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---ccccHHHHH-HHHHhhcCCCEEEEE
Confidence 12 26899999999763 32 2467999988653 221233344 458999999965554
No 331
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=96.07 E-value=0.0095 Score=54.85 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=48.0
Q ss_pred CChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCc-eeeeccccccchHHHHHHHHHHHH
Q 002345 16 LTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEF-SVVSETFKKKKDAEQSAAEKALEK 91 (933)
Q Consensus 16 ~tpka~~~---q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~-~v~~~~~~~kkdaeq~aa~~al~k 91 (933)
..||-.++ |+-+..-.|+++| +. |..- -.|.|.+.+.++ .+.+|.-+-||+|||.||+.||++
T Consensus 6 ~d~Kt~LqE~~Qk~~~~P~Y~~~~--~G----------p~H~-~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~ 72 (99)
T 1whq_A 6 SGIKNFLYAWCGKRKMTPAYEIRA--VG----------NKNR-QKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNY 72 (99)
T ss_dssp CSSHHHHHHHHHHTTCCCEEEEEE--EE----------CSSS-EEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCeEEEee--ec----------CCCC-CeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHH
Confidence 35776664 3446667898832 11 1223 389999999995 666799999999999999999999
Q ss_pred cC
Q 002345 92 LG 93 (933)
Q Consensus 92 ~g 93 (933)
|+
T Consensus 73 L~ 74 (99)
T 1whq_A 73 LV 74 (99)
T ss_dssp HH
T ss_pred HH
Confidence 85
No 332
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.03 E-value=0.005 Score=65.80 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=67.8
Q ss_pred CCCCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeeccc-ccchhhHHhhhhccccCCccc
Q 002345 561 IPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTG-AVIPQVEVVTAQMSVGQSACF 639 (933)
Q Consensus 561 ~~~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~-~~shhLkvlVtq~reGqsiff 639 (933)
....++....++.++ |..|..|+.|.|+|++++..+|+.++...+++.+|+|.+|.+ .|+.-++..|..|++|....+
T Consensus 46 ~~~~~~~~~~~~~g~-g~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~ 124 (338)
T 2if4_A 46 VLDEKVSKQIIKEGH-GSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALV 124 (338)
T ss_dssp EEETTEEEEEEECCB-SCCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEE
T ss_pred eCCCCeEEEEEeCCC-CCCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEE
Confidence 344567777777665 458999999999999999877999998888899999999999 899999999999999987766
Q ss_pred c
Q 002345 640 C 640 (933)
Q Consensus 640 ~ 640 (933)
.
T Consensus 125 ~ 125 (338)
T 2if4_A 125 H 125 (338)
T ss_dssp E
T ss_pred E
Confidence 6
No 333
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=96.01 E-value=0.033 Score=60.77 Aligned_cols=123 Identities=12% Similarity=0.105 Sum_probs=76.8
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002345 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756 (933)
Q Consensus 677 PLy~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~ 756 (933)
.-....+.++.+.....++.+|||+||+.|.++...+...+ ...|+|+|+...--+.= +..++.+.
T Consensus 77 SR~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~P-------------~~~~ql~w 142 (321)
T 3lkz_A 77 SRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEEP-------------QLVQSYGW 142 (321)
T ss_dssp STHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCCC-------------CCCCBTTG
T ss_pred chHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccCc-------------chhhhcCC
Confidence 33444555666654445677999999999999997766542 46899999976421000 00001233
Q ss_pred ccEEEEEc-CccccCCCCCCccEEEEccccccCChhHH---HH--HHHHHHHccCCC--EEEEEecCC
Q 002345 757 KSAVLFDG-SITVFDSRLHGFDIGTCLEVIEHMEEDEA---SQ--FGNIVLSSFRPR--ILIVSTPNY 816 (933)
Q Consensus 757 ~nVefi~G-DaedLp~~~~sFDlVVc~eVLEHLpdD~l---~a--L~eeI~rlLKPG--~LIITTPN~ 816 (933)
.-|.|..+ |+..++. ..+|+|+|-.. |--+.... .. .++.+.+.|++| -++|=+.+.
T Consensus 143 ~lV~~~~~~Dv~~l~~--~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 143 NIVTMKSGVDVFYRPS--ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp GGEEEECSCCTTSSCC--CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred cceEEEeccCHhhCCC--CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 35899998 9877765 56999999766 55543221 11 233345778766 666666654
No 334
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=95.93 E-value=0.0046 Score=55.75 Aligned_cols=63 Identities=24% Similarity=0.352 Sum_probs=56.0
Q ss_pred CccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 577 GIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 577 ~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
|.-|..|+.|.|+|++++ .+|+.+++..+++..|+|.+|.+.|..-++..|..|++|....+.
T Consensus 3 g~~~~~gd~V~v~y~~~~-~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ 65 (102)
T 2pbc_A 3 PIKSRKGDVLHMHYTGKL-EDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLV 65 (102)
T ss_dssp CCCCCTTCEEEEEEEEEC-TTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEE
T ss_pred CCcCCCCCEEEEEEEEEE-CCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEE
Confidence 456899999999999998 458888777777899999999999999999999999999988876
No 335
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=95.92 E-value=0.0079 Score=55.20 Aligned_cols=69 Identities=22% Similarity=0.135 Sum_probs=51.3
Q ss_pred cCCCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHH
Q 002345 13 KMKLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKA 88 (933)
Q Consensus 13 ~~~~tpka~~~---q~~g~~-~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~a 88 (933)
+...+||-+++ |+.|.. -.|++.+. .|. . | .|.|.+.+.+-.+.+|.-+-||+|||.||+.|
T Consensus 13 ~~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~-----~Gp------~--~-~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~A 78 (98)
T 1x47_A 13 PNGKSEVCILHEYMQRVLKVRPVYNFFEC-----ENP------S--E-PFGASVTIDGVTYGSGTASSKKLAKNKAARAT 78 (98)
T ss_dssp TTCCCHHHHHHHHHHHHTCSCCEEEEEEC-----SSS------S--C-CEEEEEEETTEEEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEEe-----ECC------C--C-cEEEEEEECCEEEEEeeeCCHHHHHHHHHHHH
Confidence 35568888775 455554 47877532 121 1 3 79999999886667788999999999999999
Q ss_pred HHHcCCC
Q 002345 89 LEKLGID 95 (933)
Q Consensus 89 l~k~g~~ 95 (933)
|++|+-.
T Consensus 79 L~~L~~~ 85 (98)
T 1x47_A 79 LEILIPD 85 (98)
T ss_dssp HHHHCSS
T ss_pred HHHHHhh
Confidence 9999843
No 336
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Probab=95.84 E-value=0.0099 Score=55.19 Aligned_cols=73 Identities=22% Similarity=0.366 Sum_probs=61.5
Q ss_pred CCc-eeEeecCCCCCC-ccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 563 EHG-IYCLSIGGPDSG-IYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 563 ~~~-~~~~~i~~~d~~-~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
.++ +....++.+++. ..|..|+.|.|+|++++. +|+. ++++.+|+|.+|.+.|..-++..|..|++|....+.
T Consensus 11 ~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~-dG~~----~ds~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~~~ 85 (118)
T 2awg_A 11 GNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLE-NGTR----VQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVT 85 (118)
T ss_dssp SSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECT-TSCE----EEEEEEEEEETTSSCSCHHHHHHGGGSCTTCEEEEE
T ss_pred CCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEEC-CCCE----EECCCCEEEEECCCChhHHHHHHHhCCCCCCEEEEE
Confidence 344 777778877765 489999999999999984 4764 456799999999999999999999999999988776
No 337
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.75 E-value=0.0063 Score=67.82 Aligned_cols=78 Identities=21% Similarity=0.325 Sum_probs=52.0
Q ss_pred CCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccccc
Q 002345 563 EHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCK 641 (933)
Q Consensus 563 ~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~r 641 (933)
..++....++.+++...|..|..|.|+|++++ .+|+.+++..+++.+|+|.+|.+.|..-++..|..|++|....+..
T Consensus 30 ~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~-~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i 107 (457)
T 1kt0_A 30 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLC 107 (457)
T ss_dssp ---CEEEC--------CCCBTCEEEEEEEEEC------CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEE
T ss_pred CCcEEEEEEECCCCCCCCCCCCEEEEEEEEEE-CCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEE
Confidence 34677777888887778999999999999998 5599998888888999999999999999999999999999887773
No 338
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A
Probab=95.72 E-value=0.01 Score=56.03 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=65.7
Q ss_pred cCCCCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhh------ccc
Q 002345 560 AIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQ------MSV 633 (933)
Q Consensus 560 ~~~~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq------~re 633 (933)
....+++....++.++ |.-|..|+.|.|+|++++. +|+.+++..++.++|+|.+|.+.|..-++..|.- |++
T Consensus 8 ~~~~~Gl~~~~l~~G~-G~~~~~gd~V~v~Y~g~~~-dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~ 85 (129)
T 1u79_A 8 SVSPSGLAFCDKVVGY-GPEAVKGQLIKAHYVGKLE-NGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLT 85 (129)
T ss_dssp EECTTSCEEEEEECCS-SCBCCTTCEEEEEEEEECT-TSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBT
T ss_pred EECCCCeEEEEEEcCC-CCCCCCCCEEEEEEEEEEC-CCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCC
Confidence 3445677777777775 4679999999999999985 5998888887789999999999999999887654 999
Q ss_pred cCCcccc
Q 002345 634 GQSACFC 640 (933)
Q Consensus 634 Gqsiff~ 640 (933)
|....+.
T Consensus 86 Ge~~~v~ 92 (129)
T 1u79_A 86 GGKRTLR 92 (129)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 9988876
No 339
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=95.64 E-value=0.012 Score=65.02 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=63.1
Q ss_pred HHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002345 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 763 (933)
Q Consensus 684 e~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~ 763 (933)
+.+++.+...++..++|..||.|..+..+++..++..+|+|+|.++.+++.|+ ++ ...++++++
T Consensus 47 ~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---------------~~~Rv~lv~ 110 (347)
T 3tka_A 47 DEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---------------DDPRFSIIH 110 (347)
T ss_dssp HHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---------------CCTTEEEEE
T ss_pred HHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---------------cCCcEEEEe
Confidence 44567777778899999999999999999887434579999999999999883 32 124799999
Q ss_pred cCccccCC---C---CCCccEEEE
Q 002345 764 GSITVFDS---R---LHGFDIGTC 781 (933)
Q Consensus 764 GDaedLp~---~---~~sFDlVVc 781 (933)
++..++.. . .+.+|.|+.
T Consensus 111 ~nF~~l~~~L~~~g~~~~vDgILf 134 (347)
T 3tka_A 111 GPFSALGEYVAERDLIGKIDGILL 134 (347)
T ss_dssp SCGGGHHHHHHHTTCTTCEEEEEE
T ss_pred CCHHHHHHHHHhcCCCCcccEEEE
Confidence 99887642 1 125888887
No 340
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=95.63 E-value=0.014 Score=60.08 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=67.2
Q ss_pred CCCCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 561 IPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 561 ~~~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
....++....++.+++ .-|..|+.|.|+|+++|. +|+.+++..+++.+|+|.+|++.|..-++..|..|++|....+.
T Consensus 101 ~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~-dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v~ 178 (209)
T 3uf8_A 101 TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLT 178 (209)
T ss_dssp ECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEET-TSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEEE
T ss_pred CCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEEC-CCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEEE
Confidence 3455777777777754 459999999999999994 59988888888899999999999999999999999999988777
No 341
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=95.48 E-value=0.046 Score=58.12 Aligned_cols=121 Identities=11% Similarity=0.141 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002345 680 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759 (933)
Q Consensus 680 ~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV 759 (933)
...+..+.+.....++.+|||+||+.|.++...+...+ ..+|+|+|+-..--+.- +..+..+...|
T Consensus 64 ~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~P-------------~~~~s~gwn~v 129 (267)
T 3p8z_A 64 SAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEEP-------------VPMSTYGWNIV 129 (267)
T ss_dssp HHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCCC-------------CCCCCTTTTSE
T ss_pred HHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccCc-------------chhhhcCcCce
Confidence 33445555555445678999999999999997766542 46899999976422100 00112355679
Q ss_pred EEEEc-CccccCCCCCCccEEEEccccccCCh--hHHH--HHHHHHHHccCCCEEEEEecCC
Q 002345 760 VLFDG-SITVFDSRLHGFDIGTCLEVIEHMEE--DEAS--QFGNIVLSSFRPRILIVSTPNY 816 (933)
Q Consensus 760 efi~G-DaedLp~~~~sFDlVVc~eVLEHLpd--D~l~--aL~eeI~rlLKPG~LIITTPN~ 816 (933)
+|.++ |+..++. ..+|.|+|-..=..=.+ +... ..++.+.+.|++|.++|=+.+.
T Consensus 130 ~fk~gvDv~~~~~--~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~~~fc~KVl~p 189 (267)
T 3p8z_A 130 KLMSGKDVFYLPP--EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKNNQFCIKVLNP 189 (267)
T ss_dssp EEECSCCGGGCCC--CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSSCEEEEEESCC
T ss_pred EEEeccceeecCC--ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhcccCCEEEEEccC
Confidence 99999 9876654 56999999654322211 1111 1234456888888555555554
No 342
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=95.48 E-value=0.024 Score=62.80 Aligned_cols=71 Identities=4% Similarity=-0.034 Sum_probs=53.3
Q ss_pred HHHHHHhhcC------CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 684 EYALQHIKES------CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 684 e~Ild~L~~~------~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
+.|++.+... ++..|||||+|.|.++..|++... ..+|++|++++.++...++.+ ...
T Consensus 42 ~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~---------------~~~ 105 (353)
T 1i4w_A 42 NKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF---------------EGS 105 (353)
T ss_dssp HHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT---------------TTS
T ss_pred HHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc---------------cCC
Confidence 4455555433 358999999999999999997520 168999999999988776542 124
Q ss_pred cEEEEEcCccccC
Q 002345 758 SAVLFDGSITVFD 770 (933)
Q Consensus 758 nVefi~GDaedLp 770 (933)
+++++.+|+..++
T Consensus 106 ~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 106 PLQILKRDPYDWS 118 (353)
T ss_dssp SCEEECSCTTCHH
T ss_pred CEEEEECCccchh
Confidence 7899999997654
No 343
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=95.46 E-value=0.024 Score=59.22 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=41.4
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 740 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~ 740 (933)
.++..|||..||+|..+....+.+ .+++|+|+++.+++.|++++.
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~g---r~~ig~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLG---RNFIGCDMNAEYVNQANFVLN 255 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHH
Confidence 477899999999999999999887 799999999999999998875
No 344
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=95.39 E-value=0.019 Score=61.48 Aligned_cols=77 Identities=23% Similarity=0.456 Sum_probs=68.3
Q ss_pred CCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 563 EHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 563 ~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
..++....++.+++...|..|..|.|+|++++. +|+.+++..+++.+|+|.+|.+.|..-++..|..|++|....+.
T Consensus 50 ~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~-dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ 126 (280)
T 1q1c_A 50 DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLL-DGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHIT 126 (280)
T ss_dssp SSSEEEEEEECCSSSCCCCTTCEEEEEEEEEET-TSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEE
T ss_pred CCceEEEEEeCCCCCcCCCCCCEEEEEEEEEEC-CCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEE
Confidence 457777788888877779999999999999984 58888887777899999999999999999999999999988876
No 345
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.27 E-value=0.019 Score=54.85 Aligned_cols=74 Identities=22% Similarity=0.350 Sum_probs=62.0
Q ss_pred CCCc-eeEeecCCCCCC-ccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccc
Q 002345 562 PEHG-IYCLSIGGPDSG-IYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACF 639 (933)
Q Consensus 562 ~~~~-~~~~~i~~~d~~-~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff 639 (933)
+.++ +....++.+++. ..|..|..|.|+|+.+|. +|+.+ +++..|+|.+|.+.|..-++..|..|++|....+
T Consensus 14 ~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~-dG~~f----ds~~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~~v 88 (135)
T 2d9f_A 14 LGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLE-NGTRV----QEEPELVFTLGDCDVIQALDLSVPLMDVGETAMV 88 (135)
T ss_dssp SSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEES-SSCEE----EEEEEEEEETTSCCSCTTTTTTGGGSCTTCEEEE
T ss_pred CCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEEC-CCCEE----ecCCCEEEEeCCCChhHHHHHHHhCCCCCCEEEE
Confidence 3444 777778878764 589999999999999984 47654 4578999999999999999999999999998877
Q ss_pred c
Q 002345 640 C 640 (933)
Q Consensus 640 ~ 640 (933)
.
T Consensus 89 ~ 89 (135)
T 2d9f_A 89 T 89 (135)
T ss_dssp E
T ss_pred E
Confidence 6
No 346
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=95.26 E-value=0.016 Score=53.18 Aligned_cols=57 Identities=14% Similarity=-0.002 Sum_probs=42.3
Q ss_pred HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCc-eeeeccccccchHHHHHHHHHHHHcC
Q 002345 24 QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEF-SVVSETFKKKKDAEQSAAEKALEKLG 93 (933)
Q Consensus 24 q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~-~v~~~~~~~kkdaeq~aa~~al~k~g 93 (933)
|+.+..-.|+|.+ + | |. --| .|...+.+.+- .+.+|.=+-||.|||.||+.||++|.
T Consensus 17 Q~~~~~p~Y~v~~--~----G-pd-----H~k-~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 17 GYASLRLHYVTVK--K----P-TA-----VDP-NSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp CSSSSCCEEEECC--C----C-SS-----SCC-SEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred cCCCCCCEEEEee--e----C-CC-----CCC-eEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 5555556788743 1 2 22 223 89999999987 56679999999999999999999763
No 347
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}
Probab=94.93 E-value=0.03 Score=55.38 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=61.1
Q ss_pred CCCCce-eEeecCCCCC-CccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcc
Q 002345 561 IPEHGI-YCLSIGGPDS-GIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSAC 638 (933)
Q Consensus 561 ~~~~~~-~~~~i~~~d~-~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsif 638 (933)
.+.++. ....++.+++ +.-|+.|+.|.|+|+.+|. +|+.+ +++..|+|.+|.+.|..-++..|..|++|....
T Consensus 39 ~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~-dG~~f----ds~~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~~ 113 (157)
T 2jwx_A 39 ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLE-NGTRV----QEEPELVFTLGDCDVIQALDLSVPLMDVGETAM 113 (157)
T ss_dssp SSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECT-TSCEE----EEEEEEEEETTTTSSCHHHHHHTTTSCTTCEEE
T ss_pred ECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEEC-CCCEe----ecCCCEEEEeCCCChhHHHHHHHcCCCCCCEEE
Confidence 344554 5666776765 3589999999999999985 47654 457999999999999999999999999999877
Q ss_pred cc
Q 002345 639 FC 640 (933)
Q Consensus 639 f~ 640 (933)
+.
T Consensus 114 v~ 115 (157)
T 2jwx_A 114 VT 115 (157)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 348
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=94.79 E-value=0.048 Score=56.98 Aligned_cols=70 Identities=20% Similarity=0.135 Sum_probs=52.0
Q ss_pred cccCCCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHH
Q 002345 11 VRKMKLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAE 86 (933)
Q Consensus 11 ~~~~~~tpka~~~---q~~g~~-~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~ 86 (933)
......+||-+++ |+.|.. -.|++.+. .| .. | .|.|.+.+.+..+.+|.-+-||+|||.||+
T Consensus 17 ~~~~~kd~ks~LqE~~q~~~~~~p~Y~~~~~-----~G---p~-----~-~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~ 82 (232)
T 2yt4_A 17 INPNGKSEVCILHEYMQRVLKVRPVYNFFEC-----EN---PS-----E-PFGASVTIDGVTYGSGTASSKKLAKNKAAR 82 (232)
T ss_dssp ECCTTSCHHHHHHHHHHHTTCCCCEEEEEEC-----SC---TT-----S-CEEEEEEETTEEEEEEEESSHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHcCCCCCeEEEEee-----EC---CC-----C-cEEEEEEECCEEEeecCCCCHHHHHHHHHH
Confidence 3345678998875 555544 47877421 12 11 3 799999999877778888999999999999
Q ss_pred HHHHHcCC
Q 002345 87 KALEKLGI 94 (933)
Q Consensus 87 ~al~k~g~ 94 (933)
.||++|+-
T Consensus 83 ~aL~~L~~ 90 (232)
T 2yt4_A 83 ATLEILIP 90 (232)
T ss_dssp HHHHHHST
T ss_pred HHHHHHHh
Confidence 99999974
No 349
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=94.71 E-value=0.072 Score=55.68 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=49.3
Q ss_pred CCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCC
Q 002345 15 KLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGI 94 (933)
Q Consensus 15 ~~tpka~~~q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~g~ 94 (933)
...||.++++- ...-.|++.+. .| |.-.| .|.|.+.+-+.. ..|.-+-||.|||.||+.||++|+.
T Consensus 160 ~~d~ks~LqE~-~~~p~Y~~~~~-----~G------p~h~~-~F~~~v~v~~~~-~~G~G~sKK~Aeq~AA~~al~~L~~ 225 (236)
T 2l3j_A 160 GKNPVMILNEL-RPGLKYDFLSE-----SG------ESHAK-SFVMSVVVDGQF-FEGSGRNKKLAKARAAQSALATVFN 225 (236)
T ss_dssp SCCHHHHHHHH-CCCEEEEEECC-----SS------SSSSC-CEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHhc-CCCCcEEEEEe-----eC------CCCCC-eEEEEEEECCEE-EEeeeCCHHHHHHHHHHHHHHHHcc
Confidence 45789887765 55567865421 11 22233 788999888864 4899999999999999999999974
Q ss_pred C
Q 002345 95 D 95 (933)
Q Consensus 95 ~ 95 (933)
.
T Consensus 226 ~ 226 (236)
T 2l3j_A 226 L 226 (236)
T ss_dssp C
T ss_pred c
Confidence 3
No 350
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Probab=94.64 E-value=0.022 Score=56.77 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=66.6
Q ss_pred cCCCCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccc
Q 002345 560 AIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACF 639 (933)
Q Consensus 560 ~~~~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff 639 (933)
.....++....++.+++-..|..|..|.|+|+.+|. +|+-+++..+++.+|+|.+ +.|.+-++..|..|++|....+
T Consensus 33 ~~~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~-dG~~fdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Ge~~~~ 109 (167)
T 1jvw_A 33 VKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLR-DGTVFDSSRERGKPTTFRP--NEVIKGWTEALQLMREGDRWRL 109 (167)
T ss_dssp EECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECT-TSCEEEEHHHHTSCEEECG--GGSCHHHHHHHTTCCTTCEEEE
T ss_pred EECCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEEC-CCCEEeeccccCCCEEEEe--CchhHHHHHHHcCCCCCCEEEE
Confidence 445567888888888766569999999999999986 4999988888889999999 4799999999999999998877
Q ss_pred c
Q 002345 640 C 640 (933)
Q Consensus 640 ~ 640 (933)
.
T Consensus 110 ~ 110 (167)
T 1jvw_A 110 F 110 (167)
T ss_dssp E
T ss_pred E
Confidence 6
No 351
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=94.63 E-value=0.046 Score=56.13 Aligned_cols=66 Identities=29% Similarity=0.355 Sum_probs=49.2
Q ss_pred CCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHH
Q 002345 15 KLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALE 90 (933)
Q Consensus 15 ~~tpka~~~---q~~g~~-~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~ 90 (933)
...||..+. |+.|.. -.|++.+.. | |...| .|.|.+.+.+. +.+|.-+-||+|||.||+.||+
T Consensus 149 ~~~pks~LqE~~q~~~~~~p~Y~~~~~~-----G------~~h~~-~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~ 215 (221)
T 2nug_A 149 KKDYKTILQEITQKRWKERPEYRLISVE-----G------PHHKK-KFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIK 215 (221)
T ss_dssp CCCHHHHHHHHHHHHHSCCCEEEEEEEE-----S------CGGGC-EEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHcCCCCceEEEEEee-----C------CCCCc-eEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHH
Confidence 357887764 444443 478775321 1 22233 89999999998 7779999999999999999999
Q ss_pred HcC
Q 002345 91 KLG 93 (933)
Q Consensus 91 k~g 93 (933)
+|+
T Consensus 216 ~L~ 218 (221)
T 2nug_A 216 LLE 218 (221)
T ss_dssp HHC
T ss_pred Hhh
Confidence 997
No 352
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=94.63 E-value=0.21 Score=54.66 Aligned_cols=128 Identities=17% Similarity=0.107 Sum_probs=82.6
Q ss_pred HHHHHHHHHh----hcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhc---ccc-cCCC
Q 002345 681 QRVEYALQHI----KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK---KLD-AAVP 752 (933)
Q Consensus 681 qRve~Ild~L----~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~---~~~-~~~P 752 (933)
.|..++-+.+ ...+...|+.+|||.......|...++ ...++-||. +++++.-++.+.....- ... ...+
T Consensus 80 ~Rt~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~-~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~ 157 (334)
T 1rjd_A 80 LRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDT 157 (334)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCC-CCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccc
Confidence 4555544443 334567999999999998888876321 257888887 77887777766532100 000 0000
Q ss_pred CC-----CCccEEEEEcCccccCC---------CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEE
Q 002345 753 CT-----DVKSAVLFDGSITVFDS---------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILI 810 (933)
Q Consensus 753 r~-----~~~nVefi~GDaedLp~---------~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LI 810 (933)
.. ...+..++.+|+.+.+. ......++++-.|+.+++++....+.+.+.+.+..|.++
T Consensus 158 ~~~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~~~~~~v 229 (334)
T 1rjd_A 158 AKSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWI 229 (334)
T ss_dssp CCTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEE
T ss_pred cccccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhCCCcEEE
Confidence 00 12578999999987421 224578899999999999998888888788877544443
No 353
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=94.58 E-value=0.94 Score=49.03 Aligned_cols=124 Identities=10% Similarity=-0.055 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhhc---CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002345 680 KQRVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756 (933)
Q Consensus 680 ~qRve~Ild~L~~---~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~ 756 (933)
..|..++-+.+.. .....||++|||-=.....+... ....++=|| .+..++..++.+.... ....
T Consensus 85 ~~Rt~~~d~~v~~~~~~g~~QvV~LGaGlDTra~Rl~~~--~~~~v~evD-~P~vi~~k~~lL~~~~---------~~~~ 152 (310)
T 2uyo_A 85 AVRTNFFDTYFNNAVIDGIRQFVILASGLDSRAYRLDWP--TGTTVYEID-QPKVLAYKSTTLAEHG---------VTPT 152 (310)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEETCTTCCHHHHSCCC--TTCEEEEEE-CHHHHHHHHHHHHHTT---------CCCS
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeCCCCCchhhhccCC--CCcEEEEcC-CHHHHHHHHHHHHhcC---------CCCC
Confidence 3444444444322 34568999999977777766531 126899999 6999998888775211 1123
Q ss_pred ccEEEEEcCccccCC---------CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002345 757 KSAVLFDGSITVFDS---------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 816 (933)
Q Consensus 757 ~nVefi~GDaedLp~---------~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ 816 (933)
.+..++.+|+.+ .. .....=++++-.|++|++++....+.+.+...+.|| .+++...+.
T Consensus 153 ~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 153 ADRREVPIDLRQ-DWPPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp SEEEEEECCTTS-CHHHHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred CCeEEEecchHh-hHHHHHHhccCCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 568889999876 21 112345788888999999888888888888888899 777776554
No 354
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=94.50 E-value=0.063 Score=56.38 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=49.8
Q ss_pred CCChHhHHH---HhccC-ceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHH
Q 002345 15 KLTPKAIIV---QKFGR-NAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALE 90 (933)
Q Consensus 15 ~~tpka~~~---q~~g~-~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~ 90 (933)
...||..+. |+-|. .-.|++.+. .| |...| .|.|.+.+.+-.+.+|.-+-||+|||.||+.||+
T Consensus 178 ~~dpkt~LqE~~q~~~~~~p~Y~~~~~-----~G------p~h~~-~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~ 245 (252)
T 1o0w_A 178 LFDYKTALQEIVQSEHKVPPEYILVRT-----EK------NDGDR-IFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYE 245 (252)
T ss_dssp CSCHHHHHHHHHHHHHSSCCEEEEEEE-----EC------CTTSC-EEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHcCCCCceEEEEee-----eC------CCCCC-eEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHH
Confidence 457887764 44443 467887532 11 22233 7999999999777779999999999999999999
Q ss_pred HcCC
Q 002345 91 KLGI 94 (933)
Q Consensus 91 k~g~ 94 (933)
+|+-
T Consensus 246 ~L~~ 249 (252)
T 1o0w_A 246 KLLK 249 (252)
T ss_dssp HHC-
T ss_pred HHhh
Confidence 9973
No 355
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=94.45 E-value=0.11 Score=55.65 Aligned_cols=121 Identities=10% Similarity=0.046 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC-CCC
Q 002345 678 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC-TDV 756 (933)
Q Consensus 678 Ly~qRve~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr-~~~ 756 (933)
-....+.+|.+.--..++.+|||+||+.|.++...++..+ ...|.|.++.... . +. ...|. .+.
T Consensus 57 RAayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~-vg~V~G~vig~D~-~-----~~--------P~~~~~~Gv 121 (269)
T 2px2_A 57 RGTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKN-VQEVRGYTKGGPG-H-----EE--------PMLMQSYGW 121 (269)
T ss_dssp THHHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTT-EEEEEEECCCSTT-S-----CC--------CCCCCSTTG
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcC-CCCceeEEEcccc-c-----cC--------CCcccCCCc
Confidence 3334455565554234678999999999999999988721 2345666655431 0 00 00001 122
Q ss_pred ccEEEEEc-CccccCCCCCCccEEEEccccccCCh---hHHHH--HHHHHHHccCCCE--EEEEecCC
Q 002345 757 KSAVLFDG-SITVFDSRLHGFDIGTCLEVIEHMEE---DEASQ--FGNIVLSSFRPRI--LIVSTPNY 816 (933)
Q Consensus 757 ~nVefi~G-DaedLp~~~~sFDlVVc~eVLEHLpd---D~l~a--L~eeI~rlLKPG~--LIITTPN~ 816 (933)
.-+.|.++ |+.+++ ...+|+|+|-+.=. -.. |.... ..+-+.++|+||. +++=+-+.
T Consensus 122 ~~i~~~~G~Df~~~~--~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 122 NIVTMKSGVDVFYKP--SEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp GGEEEECSCCGGGSC--CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred eEEEeeccCCccCCC--CCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 23466668 998754 45799999976432 221 11111 2344558999984 66655553
No 356
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=94.38 E-value=0.045 Score=52.10 Aligned_cols=65 Identities=14% Similarity=0.035 Sum_probs=46.2
Q ss_pred CChHhHH---HHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCc-eeeeccccccchHHHHHHHHHHHH
Q 002345 16 LTPKAII---VQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEF-SVVSETFKKKKDAEQSAAEKALEK 91 (933)
Q Consensus 16 ~tpka~~---~q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~-~v~~~~~~~kkdaeq~aa~~al~k 91 (933)
.-||-.+ -|+++..-.|+|.+. . |.--| .|...+.+.+- .+..|.=+-||.|||.||+.||++
T Consensus 8 ~D~KT~LQE~~Q~~~~~P~Y~vv~~--G----------PdH~k-~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~ 74 (117)
T 1t4o_A 8 MNAKRQLYSLIGYASLRLHYVTVKK--P----------TAVDP-NSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRD 74 (117)
T ss_dssp TTHHHHHHHHHCCGGGCCEEEEEEC--C----------CSSCC-CEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHcCCCCCCEEEEeee--C----------CCCCC-eEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 3566543 356665567987641 1 12233 89999999987 566799999999999999999876
Q ss_pred cC
Q 002345 92 LG 93 (933)
Q Consensus 92 ~g 93 (933)
|.
T Consensus 75 l~ 76 (117)
T 1t4o_A 75 KK 76 (117)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 357
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=93.97 E-value=0.0098 Score=65.26 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=0.0
Q ss_pred cCCCCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccc
Q 002345 560 AIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACF 639 (933)
Q Consensus 560 ~~~~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff 639 (933)
....+++....++.+++...|..|+.|.|+|+++|.+ |+.+++..+++..|+|.+|++.|..-++..|..|++|....+
T Consensus 7 ~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~d-G~~fdss~~~~~p~~~~lG~g~~i~g~e~~l~gm~~Ge~~~~ 85 (356)
T 3jxv_A 7 EIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLD-GKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALF 85 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECC-CCEEEEcccCCCcEEEEeCCCccchHHHHHHhcCCCCCEEEE
Confidence 3445678888888888778999999999999999975 999999988889999999999999999999999999998877
Q ss_pred c
Q 002345 640 C 640 (933)
Q Consensus 640 ~ 640 (933)
.
T Consensus 86 ~ 86 (356)
T 3jxv_A 86 T 86 (356)
T ss_dssp -
T ss_pred E
Confidence 7
No 358
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=93.87 E-value=0.064 Score=50.04 Aligned_cols=63 Identities=19% Similarity=0.373 Sum_probs=54.7
Q ss_pred cCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccccccCCc
Q 002345 579 YPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPP 645 (933)
Q Consensus 579 ~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~r~lP~ 645 (933)
-|..|..|.|+|++++ +|+.+++. ..+.|+|.+|.+.|..-++..|.-|.+|....+..+.|+
T Consensus 29 ~~~~gD~V~v~Y~g~~--dG~~fdss--~~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~ 91 (113)
T 1hxv_A 29 KLANGDIAIIDFTGIV--DNKKLASA--SAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPS 91 (113)
T ss_dssp CCCSSEEEEEEEEEEE--TTEECSTT--CCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCT
T ss_pred CCCCCCEEEEEEEEEE--CCEEcccC--CccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCch
Confidence 4789999999999998 79877776 368999999999999999999999999999888754343
No 359
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=93.39 E-value=0.056 Score=54.22 Aligned_cols=60 Identities=15% Similarity=0.300 Sum_probs=55.0
Q ss_pred CCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 580 PSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 580 p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
++.|+.|.|+|+++|. +|+-+++..+++++|+|.+|.+.|..-++..|..|++|....+.
T Consensus 25 i~~gd~V~v~Y~g~l~-dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~ 84 (169)
T 4dt4_A 25 VQSNSAVLVHFTLKLD-DGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFS 84 (169)
T ss_dssp CCTTCEEEEEEEEEET-TSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEE
T ss_pred CCCCCEEEEEEEEEEC-CCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEE
Confidence 3899999999999986 59988888887899999999999999999999999999998887
No 360
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=93.25 E-value=0.028 Score=52.21 Aligned_cols=85 Identities=18% Similarity=0.114 Sum_probs=68.4
Q ss_pred ChHHHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHH
Q 002345 102 SAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYI 181 (933)
Q Consensus 102 ~~~e~~~~l~~~~~~~f~~~~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~ 181 (933)
+.++.-+.|+.+|.|-|||+=|..++=|..|+. -=|.||+++||.+- |+.++.+ | +.+|
T Consensus 10 ~~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~md--------~~G~Vpl~~iasF~-r~k~lt~--------d----~~~i 68 (101)
T 2cqk_A 10 STEDLKECLKKQLEFCFSRENLSKDLYLISQMD--------SDQFIPIWTVANME-EIKKLTT--------D----PDLI 68 (101)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHCHHHHHHSC--------TTSCEEHHHHHHCH-HHHHHCC--------C----HHHH
T ss_pred CHHHHHHHHHHHHHhhcchhhhccCHHHHHhhh--------cCCCEEhHHHhCCh-HHHHHcC--------C----HHHH
Confidence 778888999999999999998888887777762 34899999999874 4555443 1 4678
Q ss_pred HHHhhccCCcEEeecCceeeeecCCCC
Q 002345 182 MRAATRLSEFVVTSEGQLSIWRKDPYP 208 (933)
Q Consensus 182 ~~a~~~~~~~~~~s~~~~~~~~~~~~~ 208 (933)
..|.+.++- |.+++..-.|+|..|-|
T Consensus 69 ~~al~~S~~-levsedg~kVRr~~~~~ 94 (101)
T 2cqk_A 69 LEVLRSSPM-VQVDEKGEKVRPSHKRC 94 (101)
T ss_dssp HHHHHHSSS-EEECSSSSEEEECCSCC
T ss_pred HHHHHhCCc-EEEcCCCCeeeeCCCCC
Confidence 888888765 89999999999998865
No 361
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=93.17 E-value=0.14 Score=53.59 Aligned_cols=66 Identities=23% Similarity=0.218 Sum_probs=46.7
Q ss_pred ChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCCCC
Q 002345 17 TPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGIDP 96 (933)
Q Consensus 17 tpka~~~q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~g~~~ 96 (933)
||--.++|. ...-.|++.+... |.--| .|.|.+.+.+.. ..|.-+-||+|||.||+.||++|..-+
T Consensus 8 ~~l~~l~e~-~~~p~Y~~~~~~G-----------p~H~~-~F~~~v~v~g~~-~~G~G~SKK~Aeq~AA~~al~~l~~~~ 73 (236)
T 2l3j_A 8 NALMQLNEI-KPGLQYMLLSQTG-----------PVHAP-LFVMSVEVNGQV-FEGSGPTKKKAKLHAAEKALRSFVQFP 73 (236)
T ss_dssp HHHHHHHHH-CSSCEEEEEEEES-----------CTTSC-EEEEEEEETTEE-EEEEESHHHHHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHhhc-CCCceEEEEeccC-----------CCCCC-eEEEEEEECCEE-EEEecCChHHHHHHHHHHHHHHHHhcc
Confidence 344455554 3445787753221 22233 899999998865 489999999999999999999998654
No 362
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=92.80 E-value=0.093 Score=52.43 Aligned_cols=66 Identities=18% Similarity=0.122 Sum_probs=43.9
Q ss_pred CCCChHhHHHH---hccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHH
Q 002345 14 MKLTPKAIIVQ---KFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALE 90 (933)
Q Consensus 14 ~~~tpka~~~q---~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~ 90 (933)
+...||.++++ |-+-...|++. +.| |. .+-.|.|.+.+-+..+..|+-+-||+|+|.||+.||+
T Consensus 102 ~~~n~~~~L~E~~qk~~~~~~Y~~~------~~G------~~-h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~ 168 (179)
T 1qu6_A 102 SMGNYIGLINRIAQKKRLTVNYEQC------ASG------VH-GPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYL 168 (179)
T ss_dssp CCCCCHHHHHHHHHHSCCEEEEEEE------EEC------SS-SSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCcceEEec------CcC------CC-CCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHH
Confidence 34578888775 44444456542 222 11 1235666666666666678888899999999999999
Q ss_pred Hc
Q 002345 91 KL 92 (933)
Q Consensus 91 k~ 92 (933)
+|
T Consensus 169 ~L 170 (179)
T 1qu6_A 169 QI 170 (179)
T ss_dssp HH
T ss_pred HH
Confidence 98
No 363
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*
Probab=92.73 E-value=0.12 Score=53.51 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=64.9
Q ss_pred cCCCCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccc
Q 002345 560 AIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACF 639 (933)
Q Consensus 560 ~~~~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff 639 (933)
.....++....++.++ |.-|..|..|.|+|+.+|. +|+.+++..+++.+|+|.+ +.|..-++..|..|++|....+
T Consensus 102 ~~~~sGl~y~vl~~G~-G~~p~~gD~V~V~Y~g~l~-dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v 177 (213)
T 1fd9_A 102 VVLPSGLQYKVINSGN-GVKPGKSDTVTVEYTGRLI-DGTVFDSTEKTGKPATFQV--SQVIPGWTEALQLMPAGSTWEI 177 (213)
T ss_dssp EECTTSCEEEEEECCC-SCCCCTTCEEEEEEEEEET-TSCEEEEHHHHCSCEEEEG--GGSCHHHHHHHTTCCTTCEEEE
T ss_pred EECCCccEEEEEecCC-CccCCCCCEEEEEEEEEEC-CCCEEeeccccCCCEEEEc--CchhhHHHHHHcCCCCCCEEEE
Confidence 3445567777777765 5789999999999999987 5999999888889999999 4799999999999999998876
Q ss_pred c
Q 002345 640 C 640 (933)
Q Consensus 640 ~ 640 (933)
.
T Consensus 178 ~ 178 (213)
T 1fd9_A 178 Y 178 (213)
T ss_dssp E
T ss_pred E
Confidence 6
No 364
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=92.50 E-value=0.11 Score=56.83 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=63.9
Q ss_pred ceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHH-hhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 565 GIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKEL-LESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 565 ~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~-~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
.+....++.+++...|..|+.|.|+|+.+|.+ |+-++.. .++++.|+|.+|.+.|..-++..|..|++|....+.
T Consensus 245 ~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~d-G~~fd~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~ 320 (356)
T 3jxv_A 245 KILKKVLKEXEGYERPNEGAVVTVKITGKLQD-GTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVT 320 (356)
T ss_dssp CEEEEEEECCBSSCCCCTTCEEEEEEEEEESS-SCEEEEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEE
T ss_pred ceeEEeeecccccCCCCCCCEEEEEEEEEECC-CCEEeeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEEEE
Confidence 56666777777768999999999999999964 8766554 355789999999999999999999999999998877
No 365
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A
Probab=92.36 E-value=0.16 Score=52.97 Aligned_cols=74 Identities=16% Similarity=0.302 Sum_probs=62.7
Q ss_pred CCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 563 EHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 563 ~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
..++....++.++ |.-|..|+.|.|+|+.+|. +|+-+++..+++.+|+|.+ +.|..-++..|..|++|....+.
T Consensus 120 ~sGl~y~vl~~G~-G~~p~~gD~V~V~Y~g~l~-dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~ 193 (224)
T 1q6h_A 120 STGLVYQVVEAGK-GEAPKDSDTVVVNYKGTLI-DGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLV 193 (224)
T ss_dssp TTSCEEEEEECCS-SCCCCTTCEEEEEEEEEET-TSCEEEEGGGGTSCEEEEG--GGSCHHHHHHGGGSCTTCEEEEE
T ss_pred CCceEEEEEeccc-CccccCCCEEEEEEEEEeC-CCCEEeeccccCCCEEEEc--CCcchhHHHHHcCCCCCCEEEEE
Confidence 3466666676665 5689999999999999987 5999998888889999999 47999999999999999988776
No 366
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=92.29 E-value=0.099 Score=51.71 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=51.9
Q ss_pred CCCcEEEEEEEEEEEEeCchhhHHhhc-------------ccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 581 SNGCLSFISYSVSLVIEGETMKELLES-------------REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 581 ~~gs~~~i~y~~~l~~~g~~~~~~~e~-------------~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
..|+.|.|+|+++| +|+-+++..+. ..+|+|.+|.+.|..-++..|..|++|....+.
T Consensus 3 ~~Gd~V~v~Y~g~l--dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~ 73 (157)
T 3pr9_A 3 EKGKMVKISYDGYV--DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVV 73 (157)
T ss_dssp CTTCEEEEEEEEEE--TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEE
T ss_pred CCCCEEEEEEEEEE--CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEE
Confidence 68999999999999 79888776653 378999999999999999999999999998877
No 367
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=92.17 E-value=0.46 Score=52.03 Aligned_cols=115 Identities=13% Similarity=0.148 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhh-----cCCCCEEEEEcC------CcChH-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccc
Q 002345 680 KQRVEYALQHIK-----ESCATTLVDFGC------GSGSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKL 747 (933)
Q Consensus 680 ~qRve~Ild~L~-----~~~g~rVLDIGC------GtG~f-L~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~ 747 (933)
-..+..+.+.+. ...+.+|||+|+ -.|.+ ++.+.+.+ ..|+++|+.+-.
T Consensus 90 v~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g---~~VVavDL~~~~---------------- 150 (344)
T 3r24_A 90 VAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTG---TLLVDSDLNDFV---------------- 150 (344)
T ss_dssp HHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTT---CEEEEEESSCCB----------------
T ss_pred HHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCC---cEEEEeeCcccc----------------
Confidence 344444445443 346899999996 45663 23333332 489999997631
Q ss_pred ccCCCCCCCccEEEEEcCccccCCCCCCccEEEEcccc---ccCChh------HHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 748 DAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVI---EHMEED------EASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 748 ~~~~Pr~~~~nVefi~GDaedLp~~~~sFDlVVc~eVL---EHLpdD------~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
.... .+++||...... ...||+|++-+.= -|...+ -.....+-+.+.|+|| .+++=+-..+
T Consensus 151 -------sda~-~~IqGD~~~~~~-~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs 221 (344)
T 3r24_A 151 -------SDAD-STLIGDCATVHT-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS 221 (344)
T ss_dssp -------CSSS-EEEESCGGGEEE-SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred -------cCCC-eEEEcccccccc-CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC
Confidence 0112 459999866443 4789999995531 222211 2334445567899999 6666555444
Q ss_pred hhHHH
Q 002345 818 YNAIL 822 (933)
Q Consensus 818 fNs~f 822 (933)
.+..+
T Consensus 222 g~~~L 226 (344)
T 3r24_A 222 WNADL 226 (344)
T ss_dssp CCHHH
T ss_pred CHHHH
Confidence 34433
No 368
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=91.73 E-value=0.11 Score=56.75 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=53.1
Q ss_pred CEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC---
Q 002345 696 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--- 772 (933)
Q Consensus 696 ~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~--- 772 (933)
.+|||+-||.|.+...+.+.|..+..|.++|+++.+++..+.+.. +..++.+|+.++...
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----------------~~~~~~~Di~~~~~~~~~ 65 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----------------HTQLLAKTIEGITLEEFD 65 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----------------TSCEECSCGGGCCHHHHH
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----------------ccccccCCHHHccHhHcC
Confidence 579999999999999998876324579999999999999876532 234678888876421
Q ss_pred CCCccEEEEc
Q 002345 773 LHGFDIGTCL 782 (933)
Q Consensus 773 ~~sFDlVVc~ 782 (933)
...+|+|+..
T Consensus 66 ~~~~D~l~~g 75 (343)
T 1g55_A 66 RLSFDMILMS 75 (343)
T ss_dssp HHCCSEEEEC
T ss_pred cCCcCEEEEc
Confidence 1258988874
No 369
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=91.58 E-value=0.034 Score=57.91 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=0.0
Q ss_pred eEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCC
Q 002345 57 LYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGI 94 (933)
Q Consensus 57 ~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~g~ 94 (933)
.|.|.+.+.+-.+.+|+-+-||+|||.||+.||++|+-
T Consensus 194 ~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~ 231 (242)
T 2a11_A 194 EFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEV 231 (242)
T ss_dssp --------------------------------------
T ss_pred eEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 89999999887666799999999999999999999974
No 370
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=91.28 E-value=0.27 Score=54.58 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=53.4
Q ss_pred CEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC----
Q 002345 696 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS---- 771 (933)
Q Consensus 696 ~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~---- 771 (933)
.+|+|+-||.|.+...+.+.| +..|.++|+++.+++..+.+. ++..++.+|+.++..
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~-----------------~~~~~~~~DI~~~~~~~~~ 63 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINF-----------------PRSLHVQEDVSLLNAEIIK 63 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHC-----------------TTSEEECCCGGGCCHHHHH
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhC-----------------CCCceEecChhhcCHHHHH
Confidence 479999999999999998887 467889999999988876542 245678889887642
Q ss_pred ----CCCCccEEEEc
Q 002345 772 ----RLHGFDIGTCL 782 (933)
Q Consensus 772 ----~~~sFDlVVc~ 782 (933)
....+|+|+..
T Consensus 64 ~~~~~~~~~D~i~gg 78 (376)
T 3g7u_A 64 GFFKNDMPIDGIIGG 78 (376)
T ss_dssp HHHCSCCCCCEEEEC
T ss_pred hhcccCCCeeEEEec
Confidence 23578999873
No 371
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=91.07 E-value=0.16 Score=49.62 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=51.9
Q ss_pred CCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 580 PSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 580 p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
++.|+.|.|+|++++..+|+-+++..+ ..+|+|.+|.+.|..-++..|.-|++|....+.
T Consensus 7 i~~gd~V~v~Y~g~~~~dG~~fdss~~-~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ 66 (151)
T 2kr7_A 7 ESIKQAALIEYEVREQGSSIVLDSNIS-KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVV 66 (151)
T ss_dssp TTSCCEEEEEEEEEESSCSCEEEESTT-TCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCCEEEeCCC-CcCEEEEECCCCccHHHHHHHcCCCCCCEEEEE
Confidence 478999999999997645877666544 378999999999999999999999999998877
No 372
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=90.91 E-value=0.043 Score=57.74 Aligned_cols=37 Identities=38% Similarity=0.418 Sum_probs=0.0
Q ss_pred eEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002345 57 LYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (933)
Q Consensus 57 ~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~g 93 (933)
.|.|.+.+.+-.+.+|.-+-||+|||.||+.||++|+
T Consensus 210 ~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~ 246 (248)
T 3n3w_A 210 QFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 246 (248)
T ss_dssp -------------------------------------
T ss_pred eEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHH
Confidence 8999999988666678889999999999999999986
No 373
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=90.88 E-value=0.26 Score=51.76 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=46.3
Q ss_pred CCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002345 15 KLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (933)
Q Consensus 15 ~~tpka~~~q~~g~~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~g 93 (933)
..||+-.+.|..+....|..++. ...| .|.+.+.+.+-.+.+|+=+-||.|||.||+.||++|+
T Consensus 199 ~k~~l~el~~~~~~~~~~~~~~~--------------~~~~-~f~v~v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~ 262 (265)
T 3c4b_A 199 PRSPVRELLEMEPETAKFSPAER--------------TYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLK 262 (265)
T ss_dssp CCCHHHHHHHHCTTTEEECCCEE--------------CTTS-CEEEEEEETTTEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhccCCceeeeccc--------------cCCC-cEEEEEEEecceEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 35788888887765333322210 1122 6888888888767778889999999999999999985
No 374
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0
Probab=90.78 E-value=0.097 Score=54.54 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=61.5
Q ss_pred cCCCCceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccc
Q 002345 560 AIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACF 639 (933)
Q Consensus 560 ~~~~~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff 639 (933)
.....++....++.++ |.-|+.|+.|.|+|+++|.+ |+-+++. +.+|+|.+| .|..-++..|..|++|....+
T Consensus 113 ~~~~sGl~y~vl~~G~-G~~p~~gd~V~V~Y~g~l~d-G~vfDss---~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v 185 (219)
T 3oe2_A 113 KELADGILMTELTPGT-GPKPDANGRVEVRYVGRLPD-GKIFDQS---TQPQWFRLD--SVISGWTSALQNMPTGAKWRL 185 (219)
T ss_dssp EECGGGCEEEEEECCC-SCCCCTTSEEEEEEEEECTT-SCEEEEC---SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEE
T ss_pred EECCCCeEEEEEecCC-CccCCCCCEEEEEEEEEECC-CCEeecc---CCcEEEEec--chhHHHHHHHhCCCCCCEEEE
Confidence 3445677777787776 56799999999999999874 8877766 789999998 689999999999999998876
Q ss_pred c
Q 002345 640 C 640 (933)
Q Consensus 640 ~ 640 (933)
.
T Consensus 186 ~ 186 (219)
T 3oe2_A 186 V 186 (219)
T ss_dssp E
T ss_pred E
Confidence 6
No 375
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=89.90 E-value=0.22 Score=52.32 Aligned_cols=62 Identities=26% Similarity=0.436 Sum_probs=53.6
Q ss_pred CCCcEEEEEEEEEEEEeCchhhHHhhc-------------ccceeEeecccccchhhHHhhhhccccCCccccccCCch
Q 002345 581 SNGCLSFISYSVSLVIEGETMKELLES-------------REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQ 646 (933)
Q Consensus 581 ~~gs~~~i~y~~~l~~~g~~~~~~~e~-------------~~~fef~~g~~~~shhLkvlVtq~reGqsiff~r~lP~~ 646 (933)
..|+.|.|+|+++| +|+-+++..+. ..+|+|.+|.+.|.+-++..|..|.+|....+. +|+.
T Consensus 3 ~~Gd~V~v~Y~g~l--dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~--Ippe 77 (231)
T 3prb_A 3 EKGKMVKISYDGYV--DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVV--LPPE 77 (231)
T ss_dssp CTTCEEEEEEEEEE--TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEE--ECGG
T ss_pred CCCCEEEEEEEEEE--CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEE--eCcH
Confidence 67999999999999 79888776653 378999999999999999999999999998877 4543
No 376
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=89.24 E-value=0.14 Score=49.95 Aligned_cols=60 Identities=25% Similarity=0.373 Sum_probs=51.8
Q ss_pred CCCCcEEEEEEEEEEEEeCchhhHHhh------------c-ccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 580 PSNGCLSFISYSVSLVIEGETMKELLE------------S-REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 580 p~~gs~~~i~y~~~l~~~g~~~~~~~e------------~-~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
+..|+.|.|+|++++ .+|+-+++..+ . ..+++|.+|.+.|..-++..|..|++|....+.
T Consensus 2 i~~gd~V~v~Y~g~~-~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ 74 (151)
T 1ix5_A 2 VDKGVKIKVDYIGKL-ESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVK 74 (151)
T ss_dssp CCTTCEEEECCEECC-TTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEE
T ss_pred CCCCCEEEEEEEEEE-CCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEE
Confidence 478999999999998 45887776654 2 368999999999999999999999999998877
No 377
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=88.64 E-value=0.27 Score=50.38 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=50.2
Q ss_pred CCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 580 PSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 580 p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
++.|+.|.|+|++++ .+|+.+++..+ .++|+|.+|.+.|++-++..|.-|++|....+.
T Consensus 3 i~~gd~V~v~Y~g~~-~dG~~fdss~~-~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~ 61 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRT-EDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVA 61 (196)
T ss_dssp CCSSCEEEEEEEEEE-TTTEEEEECCT-TSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEE
T ss_pred CCCCCEEEEEEEEEE-CCCCEEEecCC-CCCEEEEECCCCcchHHHHHHcCCCCCCEEEEE
Confidence 378999999999997 45776555443 278999999999999999999999999998887
No 378
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=88.61 E-value=1 Score=48.93 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=51.2
Q ss_pred CCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-C
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-L 773 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~-~ 773 (933)
..+++|+.||.|.+...+.+.| +..|.++|+++.+++..+.+... .. .+|+.++... .
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~--------------~~-----~~Di~~~~~~~~ 69 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGE--------------KP-----EGDITQVNEKTI 69 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSC--------------CC-----BSCGGGSCGGGS
T ss_pred CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCC--------------CC-----cCCHHHcCHhhC
Confidence 4689999999999999998887 47799999999999888776421 10 5777765432 2
Q ss_pred CCccEEEEc
Q 002345 774 HGFDIGTCL 782 (933)
Q Consensus 774 ~sFDlVVc~ 782 (933)
..+|+|+..
T Consensus 70 ~~~D~l~~g 78 (327)
T 2c7p_A 70 PDHDILCAG 78 (327)
T ss_dssp CCCSEEEEE
T ss_pred CCCCEEEEC
Confidence 358998873
No 379
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=87.84 E-value=0.58 Score=49.98 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=58.3
Q ss_pred CceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccc---cchhhHHhhhhccccCCcccc
Q 002345 564 HGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGA---VIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 564 ~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~---~shhLkvlVtq~reGqsiff~ 640 (933)
..+....++.+++...|..|..|.|+|+.++ +|+.++. ++|+|.+|.+. |..-++..|..|++|....+.
T Consensus 168 ~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~--dG~~fd~-----~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ 240 (280)
T 1q1c_A 168 GGIIRRIQTRGEGYAKPNEGAIVEVALEGYY--KDKLFDQ-----RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVY 240 (280)
T ss_dssp SSEEEEEEECCSCSCCCCTTCEEEEEEEEEE--TTEEEEE-----EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEE
T ss_pred cceeEEeeecccccccccCCceEEEEEEEEe--CCEEEec-----CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEE
Confidence 3566677777777778999999999999998 6865553 58999999887 588999999999999988766
No 380
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=87.65 E-value=0.81 Score=51.11 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=39.9
Q ss_pred CCCCEEEEEcCCcChHHHHHh-cCCCCCceEEEEeCChHHHHHHHHHHh
Q 002345 693 SCATTLVDFGCGSGSLLDSLL-DYPTALEKIVGVDISQKSLSRAAKIIH 740 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LA-r~g~~f~~VtGVDIS~emLe~ArkrL~ 740 (933)
.++..|+|||++.|.++..++ +.+++..+|+++|+++...+..++++.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~ 273 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR 273 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 467899999999999998877 444333699999999999999988775
No 381
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=87.33 E-value=0.21 Score=67.52 Aligned_cols=104 Identities=15% Similarity=0.158 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCcChHHHHHhcC----CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 694 CATTLVDFGCGSGSLLDSLLDY----PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~----g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
+..+|||||.|+|..+..+.+. ...+.+++-.|+|+...+.|++++.. .+++.-.-|..+.
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~---------------~di~~~~~d~~~~ 1304 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ---------------LHVTQGQWDPANP 1304 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH---------------HTEEEECCCSSCC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh---------------ccccccccccccc
Confidence 4569999999999765433221 10135789999999888777765532 1222211132221
Q ss_pred -CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002345 770 -DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 814 (933)
Q Consensus 770 -p~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTP 814 (933)
++...+||+|++..|+|-.+ +....+. ++.++|+|| .+++..+
T Consensus 1305 ~~~~~~~ydlvia~~vl~~t~-~~~~~l~-~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1305 APGSLGKADLLVCNCALATLG-DPAVAVG-NMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp CC-----CCEEEEECC----------------------CCEEEEEEC
T ss_pred ccCCCCceeEEEEcccccccc-cHHHHHH-HHHHhcCCCcEEEEEec
Confidence 22346799999999996554 4444554 599999999 6655443
No 382
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=87.19 E-value=0.74 Score=42.54 Aligned_cols=60 Identities=25% Similarity=0.430 Sum_probs=41.1
Q ss_pred ceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCc----eeeeccccccchHHHHHHHHH---HHHcCCCCCCCCC
Q 002345 29 NAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEF----SVVSETFKKKKDAEQSAAEKA---LEKLGIDPSPNVP 101 (933)
Q Consensus 29 ~~~~~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~----~v~~~~~~~kkdaeq~aa~~a---l~k~g~~~~~~~~ 101 (933)
+-.|+++++... + -.| |+|.||.- ++++...+.||.|.|+||-.| |.++|-=...-.|
T Consensus 26 ~P~~~~~~~~~~-------------~-~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~~G~Ldd~LlP 90 (102)
T 2kou_A 26 KPEFQFKPVDEF-------------G-GTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLP 90 (102)
T ss_dssp SCEEEEEECCGG-------------G-CEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHCSCTTTSCC
T ss_pred cceEEEeEeecC-------------C-CeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHHCCCCccccCC
Confidence 357887776431 2 267 99999993 455577899999999999877 5556753333345
Q ss_pred Ch
Q 002345 102 SA 103 (933)
Q Consensus 102 ~~ 103 (933)
+.
T Consensus 91 ~~ 92 (102)
T 2kou_A 91 DS 92 (102)
T ss_dssp HH
T ss_pred CC
Confidence 33
No 383
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=86.85 E-value=0.12 Score=56.94 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=0.0
Q ss_pred CCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCCC
Q 002345 53 KGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGID 95 (933)
Q Consensus 53 ~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~g~~ 95 (933)
.|| |.+.+.+.+-.+-+|.=+-||+|||.||+.||++|+.-
T Consensus 281 ~Gp--F~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~ 321 (341)
T 3rv0_A 281 MPP--FRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDELL 321 (341)
T ss_dssp -------------------------------------------
T ss_pred cCC--EEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhhh
Confidence 356 77777777766666888999999999999999999863
No 384
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=86.41 E-value=0.43 Score=49.85 Aligned_cols=34 Identities=26% Similarity=0.182 Sum_probs=28.8
Q ss_pred eEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002345 57 LYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (933)
Q Consensus 57 ~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k~g 93 (933)
.|.|.+. -.+..|+-+-||+|||.||+.||++|.
T Consensus 164 ~F~~~v~---~~~~~G~G~sKK~Aeq~AA~~aL~~L~ 197 (232)
T 2yt4_A 164 EYVMACG---KHTVRGWCKNKRVGKQLASQKILQLLH 197 (232)
T ss_dssp EEEEEET---TEEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred EEEEEEE---EEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 6777776 345568899999999999999999996
No 385
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=86.39 E-value=0.78 Score=48.68 Aligned_cols=70 Identities=19% Similarity=0.279 Sum_probs=56.1
Q ss_pred CceeEeecCCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccc---cchhhHHhhhhccccCCcccc
Q 002345 564 HGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGA---VIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 564 ~~~~~~~i~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~---~shhLkvlVtq~reGqsiff~ 640 (933)
.++....|+.+.+...|+.|+.|.|+|+.+| +|.-+++ . +++|-+|.|. +...++..+..|++|......
T Consensus 25 ~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~--~g~~fd~----~-~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~l~ 97 (336)
T 1p5q_A 25 GGIIRRIQTRGEGYAKPNEGAIVEVALEGYY--KDKLFDQ----R-ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVY 97 (336)
T ss_dssp TSEEEEEEECCCCSCCCCTTCEEEEEEEEEE--TTEEEEE----E-EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEE
T ss_pred CcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE--CCEEEec----C-CeEEEeCCCCccccchHHHHHHhcCCCCCeEEEE
Confidence 4677777777766668999999999999998 6765443 3 8999999886 477888889999998777665
No 386
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=86.25 E-value=0.37 Score=48.23 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=50.3
Q ss_pred CCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccccc
Q 002345 581 SNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCK 641 (933)
Q Consensus 581 ~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~r 641 (933)
+.|+.|.|+|++++. +|+-+++..+ +++|+|.+|.+.|+.-++..|.-|++|....+..
T Consensus 4 ~~gd~V~v~Y~g~~~-dG~~fdss~~-~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~i 62 (171)
T 2k8i_A 4 AKDLVVSLAYQVRTE-DGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62 (171)
T ss_dssp CTTEEEEEEEEEEET-TSCEEEECCS-SSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEEC-CCCEEeeccC-CcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEE
Confidence 789999999999975 5876555433 2689999999999999999999999999988873
No 387
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=86.05 E-value=3 Score=38.87 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=62.2
Q ss_pred CEEEEEcCCc-Ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--
Q 002345 696 TTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 771 (933)
Q Consensus 696 ~rVLDIGCGt-G~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~-- 771 (933)
.+|+=+|||. |. +...|.+.+ .+|+++|.+++.++.+++ ..+.++.||..+...
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g---~~v~vid~~~~~~~~~~~-------------------~g~~~i~gd~~~~~~l~ 65 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASD---IPLVVIETSRTRVDELRE-------------------RGVRAVLGNAANEEIMQ 65 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT---CCEEEEESCHHHHHHHHH-------------------TTCEEEESCTTSHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHH-------------------cCCCEEECCCCCHHHHH
Confidence 5799999985 44 345566666 789999999998877743 145778898876432
Q ss_pred --CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHH
Q 002345 772 --RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAIL 822 (933)
Q Consensus 772 --~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f 822 (933)
....+|+|++. ++++....+.-...+.+.|+ .++.-..+.++...+
T Consensus 66 ~a~i~~ad~vi~~-----~~~~~~n~~~~~~a~~~~~~~~iiar~~~~~~~~~l 114 (140)
T 3fwz_A 66 LAHLECAKWLILT-----IPNGYEAGEIVASARAKNPDIEIIARAHYDDEVAYI 114 (140)
T ss_dssp HTTGGGCSEEEEC-----CSCHHHHHHHHHHHHHHCSSSEEEEEESSHHHHHHH
T ss_pred hcCcccCCEEEEE-----CCChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHH
Confidence 23468888764 23233222222356677788 655555544443333
No 388
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=85.60 E-value=9.5 Score=34.27 Aligned_cols=100 Identities=21% Similarity=0.320 Sum_probs=58.0
Q ss_pred CCEEEEEcCCc-Ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--
Q 002345 695 ATTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 770 (933)
Q Consensus 695 g~rVLDIGCGt-G~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp-- 770 (933)
..+|+=+|+|. |. +...|.+.+ .+|+++|.+++.++..++.. .+.++.+|..+..
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g---~~v~~~d~~~~~~~~~~~~~------------------~~~~~~~d~~~~~~l 62 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKG---HDIVLIDIDKDICKKASAEI------------------DALVINGDCTKIKTL 62 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHC------------------SSEEEESCTTSHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHhc------------------CcEEEEcCCCCHHHH
Confidence 35789999874 33 335566666 68999999988766553210 2455667765422
Q ss_pred --CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhH
Q 002345 771 --SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNA 820 (933)
Q Consensus 771 --~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~efNs 820 (933)
.....+|+|+..- +.+........+.+.+.++.+++.+-+..+..
T Consensus 63 ~~~~~~~~d~vi~~~-----~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 109 (140)
T 1lss_A 63 EDAGIEDADMYIAVT-----GKEEVNLMSSLLAKSYGINKTIARISEIEYKD 109 (140)
T ss_dssp HHTTTTTCSEEEECC-----SCHHHHHHHHHHHHHTTCCCEEEECSSTTHHH
T ss_pred HHcCcccCCEEEEee-----CCchHHHHHHHHHHHcCCCEEEEEecCHhHHH
Confidence 1235689888762 22222222223566677775555555555433
No 389
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=83.48 E-value=1.3 Score=47.76 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=40.7
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 740 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~ 740 (933)
.++..|||.-||+|..+....+.+ .+.+|+|+++...+.|++++.
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~g---r~~ig~e~~~~~~~~~~~r~~ 295 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERES---RKWISFEMKPEYVAASAFRFL 295 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHGGGS
T ss_pred CCCCEEEECCCCCCHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHH
Confidence 478899999999999999988887 799999999999999988764
No 390
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=81.48 E-value=12 Score=38.08 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=60.1
Q ss_pred CEEEEEcCCcChHHH----HHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 696 TTLVDFGCGSGSLLD----SLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 696 ~rVLDIGCGtG~fL~----~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
++||=.|+ |.+.. .|.+.| .+|++++.++...+.... .+++++.+|+.++.
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~-------------------~~~~~~~~D~~d~~- 60 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQG---WRIIGTSRNPDQMEAIRA-------------------SGAEPLLWPGEEPS- 60 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGT---CEEEEEESCGGGHHHHHH-------------------TTEEEEESSSSCCC-
T ss_pred CcEEEECC--cHHHHHHHHHHHHCC---CEEEEEEcChhhhhhHhh-------------------CCCeEEEecccccc-
Confidence 58999995 66554 455565 789999998865433311 26899999999876
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHc-cCCC-EEEEEec
Q 002345 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSS-FRPR-ILIVSTP 814 (933)
Q Consensus 772 ~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rl-LKPG-~LIITTP 814 (933)
...+|+|+...............+.+.+.+. -+.+ .+++++.
T Consensus 61 -~~~~d~vi~~a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~ 104 (286)
T 3ius_A 61 -LDGVTHLLISTAPDSGGDPVLAALGDQIAARAAQFRWVGYLSTT 104 (286)
T ss_dssp -CTTCCEEEECCCCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEEG
T ss_pred -cCCCCEEEECCCccccccHHHHHHHHHHHhhcCCceEEEEeecc
Confidence 6789999987765544433344555533332 2334 5666664
No 391
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=81.02 E-value=1.1 Score=44.28 Aligned_cols=53 Identities=21% Similarity=0.359 Sum_probs=46.4
Q ss_pred CCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCcccc
Q 002345 581 SNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 581 ~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~ 640 (933)
+.|+.|.|+|+++ .+|+-+ |+.. ++|.+|.+.|..-++..|.-|.+|....+.
T Consensus 4 ~~gd~V~v~Y~g~--~dG~~f----dss~-~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ 56 (158)
T 3cgm_A 4 GQDKVVTIRYTLQ--VEGEVL----DQGE-LSYLHGHRNLIPGLEEALEGREEGEAFQAH 56 (158)
T ss_dssp CTTEEEEEEEEEE--ETTEEE----EEEE-EEEETTSSSSCHHHHHHHTTCBTTCEEEEE
T ss_pred CCCCEEEEEEEEE--ECCEEE----EeeE-EEEEECCCCcChHHHHHHcCCCCCCEEEEE
Confidence 6899999999999 567644 4444 999999999999999999999999998877
No 392
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=79.68 E-value=5.5 Score=44.67 Aligned_cols=78 Identities=13% Similarity=0.165 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCcChHHHHHhcC---C---CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002345 694 CATTLVDFGCGSGSLLDSLLDY---P---TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 767 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~---g---~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDae 767 (933)
..-.|+|+|.|.|.++..+.+. . ....+++-||+|+...+.-++++. ...+|.|. .++.
T Consensus 80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~--------------~~~~v~W~-~~l~ 144 (387)
T 1zkd_A 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA--------------GIRNIHWH-DSFE 144 (387)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST--------------TCSSEEEE-SSGG
T ss_pred CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc--------------CCCCeEEe-CChh
Confidence 3457999999999997655431 1 011489999999988876655542 11257665 3455
Q ss_pred ccCCCCCCccEEEEccccccCC
Q 002345 768 VFDSRLHGFDIGTCLEVIEHME 789 (933)
Q Consensus 768 dLp~~~~sFDlVVc~eVLEHLp 789 (933)
+++. ..-+|++++++.-+|
T Consensus 145 ~lp~---~~~~viANE~fDAlP 163 (387)
T 1zkd_A 145 DVPE---GPAVILANEYFDVLP 163 (387)
T ss_dssp GSCC---SSEEEEEESSGGGSC
T ss_pred hcCC---CCeEEEeccccccCc
Confidence 5542 356899999999998
No 393
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=79.51 E-value=2.2 Score=46.29 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=42.6
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCCh---HHHHHHHHHHh
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQ---KSLSRAAKIIH 740 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~---emLe~ArkrL~ 740 (933)
.++... ..++..|||.=||+|..+....+.+ .+.+|+|+++ ..++.|++++.
T Consensus 234 ~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~~---r~~ig~e~~~~~~~~~~~~~~Rl~ 288 (319)
T 1eg2_A 234 RLVRAL-SHPGSTVLDFFAGSGVTARVAIQEG---RNSICTDAAPVFKEYYQKQLTFLQ 288 (319)
T ss_dssp HHHHHH-SCTTCEEEETTCTTCHHHHHHHHHT---CEEEEEESSTHHHHHHHHHHHHC-
T ss_pred HHHHHh-CCCCCEEEecCCCCCHHHHHHHHcC---CcEEEEECCccHHHHHHHHHHHHH
Confidence 344433 3478899999999999999888887 6899999999 99999988864
No 394
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=79.27 E-value=11 Score=34.58 Aligned_cols=101 Identities=17% Similarity=0.064 Sum_probs=60.1
Q ss_pred CCEEEEEcCCc-Ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002345 695 ATTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 771 (933)
Q Consensus 695 g~rVLDIGCGt-G~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~- 771 (933)
..+|+=+|||. |. +...|.+.| .+|+++|.+++.++.+++. .+.++.+|..+...
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g---~~V~~id~~~~~~~~~~~~-------------------~~~~~~gd~~~~~~l 63 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAG---KKVLAVDKSKEKIELLEDE-------------------GFDAVIADPTDESFY 63 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT---CCEEEEESCHHHHHHHHHT-------------------TCEEEECCTTCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CeEEEEECCHHHHHHHHHC-------------------CCcEEECCCCCHHHH
Confidence 35799999974 33 445566666 6899999999887766431 35678888876432
Q ss_pred ---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHH
Q 002345 772 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAIL 822 (933)
Q Consensus 772 ---~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~efNs~f 822 (933)
....+|+|+..-- ++....+.-...+.+....++....+..+...+
T Consensus 64 ~~~~~~~~d~vi~~~~-----~~~~n~~~~~~a~~~~~~~iia~~~~~~~~~~l 112 (141)
T 3llv_A 64 RSLDLEGVSAVLITGS-----DDEFNLKILKALRSVSDVYAIVRVSSPKKKEEF 112 (141)
T ss_dssp HHSCCTTCSEEEECCS-----CHHHHHHHHHHHHHHCCCCEEEEESCGGGHHHH
T ss_pred HhCCcccCCEEEEecC-----CHHHHHHHHHHHHHhCCceEEEEEcChhHHHHH
Confidence 2357898886432 233333222344455533555555554444444
No 395
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=79.16 E-value=1.6 Score=39.79 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=55.1
Q ss_pred ccCCCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccC
Q 002345 388 NWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSR 467 (933)
Q Consensus 388 ~w~g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~ 467 (933)
+|.+--|..+|-.+|..+.+..|.|.... ..| .. ..|.|+|.|-.+.
T Consensus 12 ~~~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~----------------------------~~G--p~--~~F~~~V~v~g~~- 58 (98)
T 1x47_A 12 NPNGKSEVCILHEYMQRVLKVRPVYNFFE----------------------------CEN--PS--EPFGASVTIDGVT- 58 (98)
T ss_dssp CTTCCCHHHHHHHHHHHHTCSCCEEEEEE----------------------------CSS--SS--CCEEEEEEETTEE-
T ss_pred cCCCCCHHHHHHHHHHHcCCCCCeEEEEE----------------------------eEC--CC--CcEEEEEEECCEE-
Confidence 34566799999999999999999998750 011 11 5599999884321
Q ss_pred CcceecCchhhhhhhhhhHhhhhhHHHHHHHhhhCC
Q 002345 468 DPILECSPKEFYKKQNESIENASLKVLSWLNAYFKD 503 (933)
Q Consensus 468 ~~~~~~~~~~~~~~~~dai~~a~l~~l~~~~~~~~~ 503 (933)
+. ...-+..-+|=|+||..+|.+|..-|++
T Consensus 59 -----~~-~G~G~SKK~Aeq~AA~~AL~~L~~~~~~ 88 (98)
T 1x47_A 59 -----YG-SGTASSKKLAKNKAARATLEILIPDFVK 88 (98)
T ss_dssp -----EE-EEEESSHHHHHHHHHHHHHHHHCSSSSC
T ss_pred -----EE-EeeeCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 11 2334666789999999999999755555
No 396
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=78.44 E-value=1.2 Score=48.55 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=50.2
Q ss_pred CEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC---
Q 002345 696 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--- 772 (933)
Q Consensus 696 ~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~--- 772 (933)
-+++|+-||.|.+...+.+.|-.+..|.++|+++.+.+..+.+.. ...++.+|+.++...
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----------------~~~~~~~DI~~~~~~~~~ 66 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----------------ETNLLNRNIQQLTPQVIK 66 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----------------TSCEECCCGGGCCHHHHH
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----------------CCceeccccccCCHHHhc
Confidence 379999999999999888766223568899999998888766532 234567888776432
Q ss_pred CCCccEEEE
Q 002345 773 LHGFDIGTC 781 (933)
Q Consensus 773 ~~sFDlVVc 781 (933)
...+|+++.
T Consensus 67 ~~~~D~l~g 75 (333)
T 4h0n_A 67 KWNVDTILM 75 (333)
T ss_dssp HTTCCEEEE
T ss_pred cCCCCEEEe
Confidence 235888885
No 397
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=78.25 E-value=1 Score=45.08 Aligned_cols=87 Identities=20% Similarity=0.264 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHH
Q 002345 102 SAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYI 181 (933)
Q Consensus 102 ~~~e~~~~l~~~~~~~f~~~~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~ 181 (933)
..++.-+.|+.+|.|.|||+=|..+.=|..|+... -|.||+++||.|. |+.++.+ | ..+|
T Consensus 8 ~~~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~-------~g~V~l~~i~sF~-r~k~l~~--------d----~~~I 67 (193)
T 2voo_A 8 KMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-------EGWVPLEIMIKFN-RLNRLTT--------D----FNVI 67 (193)
T ss_dssp -CHHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHT-------TTCEEHHHHTTSH-HHHHHCC--------C----HHHH
T ss_pred CcHHHHHHHHHHhheecchhhcccCHHHHHHhccc-------CCcEEeHHHhhhh-HHHHhcC--------C----HHHH
Confidence 34667888999999999999998888788777642 6899999999764 3333332 2 3778
Q ss_pred HHHhhccC-CcEEeecCceeeeecCCCC
Q 002345 182 MRAATRLS-EFVVTSEGQLSIWRKDPYP 208 (933)
Q Consensus 182 ~~a~~~~~-~~~~~s~~~~~~~~~~~~~ 208 (933)
..|.+.+. ..+.+++++.-++|..+.|
T Consensus 68 ~~Al~~S~~~~lev~ed~~~vrR~~~~p 95 (193)
T 2voo_A 68 VEALSKSKAELMEISEDKTKIRRSPSKP 95 (193)
T ss_dssp HHHHHTCSSCCEEECTTSSEEEECTTSC
T ss_pred HHHHhhcccceEEEecccceEEecccCC
Confidence 88888761 3388899999999995333
No 398
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=77.86 E-value=3.9 Score=43.36 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=51.4
Q ss_pred CEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-CC
Q 002345 696 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-LH 774 (933)
Q Consensus 696 ~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~-~~ 774 (933)
.+|||+=||.|.+...|.+.| +.-|.++|+++.+.+.-+.+. .-.++.+|+.++... ..
T Consensus 1 mkvidLFsG~GG~~~G~~~aG--~~~v~a~e~d~~a~~ty~~N~------------------~~~~~~~DI~~i~~~~~~ 60 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAG--FRIICANEYDKSIWKTYESNH------------------SAKLIKGDISKISSDEFP 60 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTT--CEEEEEEECCTTTHHHHHHHC------------------CSEEEESCGGGCCGGGSC
T ss_pred CeEEEeCcCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHHC------------------CCCcccCChhhCCHhhCC
Confidence 379999999999999998887 577889999999888776542 125678999887542 34
Q ss_pred CccEEEE
Q 002345 775 GFDIGTC 781 (933)
Q Consensus 775 sFDlVVc 781 (933)
.+|+++.
T Consensus 61 ~~D~l~g 67 (331)
T 3ubt_Y 61 KCDGIIG 67 (331)
T ss_dssp CCSEEEC
T ss_pred cccEEEe
Confidence 6898886
No 399
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=77.84 E-value=1.8 Score=47.21 Aligned_cols=70 Identities=11% Similarity=0.094 Sum_probs=50.8
Q ss_pred CCEEEEEcCCcChHHHHHhcCCCCCceE-EEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYPTALEKI-VGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR- 772 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g~~f~~V-tGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~- 772 (933)
.-+++|+-||.|.+...+.+.|-.+..| .++|+++.+.+..+.+.. .. ++.+|+.++...
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~-----------------~~-~~~~DI~~~~~~~ 71 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK-----------------EE-VQVKNLDSISIKQ 71 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC-----------------CC-CBCCCTTTCCHHH
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC-----------------CC-cccCChhhcCHHH
Confidence 4589999999999999998876212556 799999999988876542 11 456788776431
Q ss_pred --CCCccEEEEc
Q 002345 773 --LHGFDIGTCL 782 (933)
Q Consensus 773 --~~sFDlVVc~ 782 (933)
...+|+++..
T Consensus 72 i~~~~~Dil~gg 83 (327)
T 3qv2_A 72 IESLNCNTWFMS 83 (327)
T ss_dssp HHHTCCCEEEEC
T ss_pred hccCCCCEEEec
Confidence 1258888864
No 400
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*
Probab=77.49 E-value=6.8 Score=44.63 Aligned_cols=89 Identities=21% Similarity=0.312 Sum_probs=58.1
Q ss_pred HHHHHhhcCCCCEEEEEcCCcChHHHHHh----cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002345 685 YALQHIKESCATTLVDFGCGSGSLLDSLL----DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 760 (933)
Q Consensus 685 ~Ild~L~~~~g~rVLDIGCGtG~fL~~LA----r~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVe 760 (933)
++.+.......-+|+|+|.|+|.++.-+. +.+....+++-||+|+.+.+.-++++.... .....++.
T Consensus 128 ~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~---------~~~~~~v~ 198 (432)
T 4f3n_A 128 PVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGAQA---------PGLAARVR 198 (432)
T ss_dssp HHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHHHS---------TTTGGGEE
T ss_pred HHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhccc---------cccCCCce
Confidence 34444443345799999999999876554 322112489999999998888777765321 11123677
Q ss_pred EEEcCccccCCCCCCcc-EEEEccccccCC
Q 002345 761 LFDGSITVFDSRLHGFD-IGTCLEVIEHME 789 (933)
Q Consensus 761 fi~GDaedLp~~~~sFD-lVVc~eVLEHLp 789 (933)
|.. + ++ ..|. +|+++|++.-+|
T Consensus 199 W~~-~---lP---~~~~g~iiANE~fDAlP 221 (432)
T 4f3n_A 199 WLD-A---LP---ERFEGVVVGNEVLDAMP 221 (432)
T ss_dssp EES-S---CC---SCEEEEEEEESCGGGSC
T ss_pred ecc-c---CC---ccCceEEEeehhhccCc
Confidence 753 2 32 2355 888999999998
No 401
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=76.44 E-value=3.5 Score=44.35 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCce--EEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEK--IVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~--VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
...+++|+=||.|.+...+.+.| +.. |.++|+++.+.+..+.+. +...++.+|+.++..
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG--~~~~~v~a~E~d~~a~~ty~~N~-----------------~~~~~~~~DI~~i~~ 75 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLG--IQVDRYIASEVCEDSITVGMVRH-----------------QGKIMYVGDVRSVTQ 75 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTT--BCEEEEEEECCCHHHHHHHHHHT-----------------TTCEEEECCGGGCCH
T ss_pred CCCEEEEeCcCccHHHHHHHHCC--CccceEEEEECCHHHHHHHHHhC-----------------CCCceeCCChHHccH
Confidence 45689999999999999998887 333 699999999887765442 234577889887653
Q ss_pred C----CCCccEEEEc
Q 002345 772 R----LHGFDIGTCL 782 (933)
Q Consensus 772 ~----~~sFDlVVc~ 782 (933)
. ...+|+++..
T Consensus 76 ~~i~~~~~~Dll~gg 90 (295)
T 2qrv_A 76 KHIQEWGPFDLVIGG 90 (295)
T ss_dssp HHHHHTCCCSEEEEC
T ss_pred HHhcccCCcCEEEec
Confidence 2 2468999873
No 402
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=76.28 E-value=3.9 Score=43.77 Aligned_cols=47 Identities=15% Similarity=0.037 Sum_probs=37.3
Q ss_pred HhhcCCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 689 HIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 689 ~L~~~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
.....++.+||-+|+|. |.++..+++..+ .+|+++|.+++-++.+++
T Consensus 171 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~ 218 (348)
T 3two_A 171 FSKVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDALS 218 (348)
T ss_dssp HTTCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHHH
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHh
Confidence 34556789999999985 777777877543 689999999998888854
No 403
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=75.42 E-value=2.8 Score=35.77 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=48.3
Q ss_pred ChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCccee
Q 002345 393 FPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILE 472 (933)
Q Consensus 393 ~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~ 472 (933)
-|+..|-.+|..+.+..|.|... .. |......|.|+|.|-.+ .
T Consensus 4 d~Kt~LqE~~q~~~~~~p~Y~~~-----------------------------~~--Gp~h~~~F~~~v~v~g~------~ 46 (73)
T 3adg_A 4 VFKSRLQEYAQKYKLPTPVYEIV-----------------------------KE--GPSHKSLFQSTVILDGV------R 46 (73)
T ss_dssp SHHHHHHHHHHHTTCCCCEEEEE-----------------------------EE--SSTTSCEEEEEEEETTE------E
T ss_pred CHHHHHHHHHHHcCCCCCEEEEE-----------------------------eE--CCCCCCeEEEEEEECCE------E
Confidence 47899999999999999999776 11 22223349999998532 1
Q ss_pred cCchhhhhhhhhhHhhhhhHHHHHHH
Q 002345 473 CSPKEFYKKQNESIENASLKVLSWLN 498 (933)
Q Consensus 473 ~~~~~~~~~~~dai~~a~l~~l~~~~ 498 (933)
+....-++...+|=|+||..+|.+|.
T Consensus 47 ~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 47 YNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp EECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred EEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 22222225667899999999998874
No 404
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=74.52 E-value=2.9 Score=48.09 Aligned_cols=79 Identities=10% Similarity=0.063 Sum_probs=52.9
Q ss_pred CchHHHHHHHHHHHhhcC------CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccccc
Q 002345 676 PPLSKQRVEYALQHIKES------CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA 749 (933)
Q Consensus 676 PPLy~qRve~Ild~L~~~------~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~ 749 (933)
+++....+..+...+... ..-+++|+=||.|.+...|.+.| +..|.++|+++.+.+.-+.+..
T Consensus 63 ~~~~~~~~~~l~~~~~~~p~~~~~~~~~viDLFaG~GGlslG~~~aG--~~~v~avE~d~~A~~ty~~N~~--------- 131 (482)
T 3me5_A 63 HRLSEKEFAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGFESIG--GQCVFTSEWNKHAVRTYKANHY--------- 131 (482)
T ss_dssp --CCTHHHHHHHTTSCCCCTTTTCCSEEEEEESCTTSHHHHHHHTTT--EEEEEEECCCHHHHHHHHHHSC---------
T ss_pred ccccHHHHHHHHhhCCCCCccCCCccceEEEecCCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHhcc---------
Confidence 344444455555544431 23589999999999999998877 4668999999988877765421
Q ss_pred CCCCCCCccEEEEEcCccccC
Q 002345 750 AVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 750 ~~Pr~~~~nVefi~GDaedLp 770 (933)
..+...++.+|+.++.
T Consensus 132 -----~~p~~~~~~~DI~~i~ 147 (482)
T 3me5_A 132 -----CDPATHHFNEDIRDIT 147 (482)
T ss_dssp -----CCTTTCEEESCTHHHH
T ss_pred -----cCCCcceeccchhhhh
Confidence 1123456678887654
No 405
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=73.06 E-value=14 Score=35.58 Aligned_cols=93 Identities=12% Similarity=0.098 Sum_probs=55.2
Q ss_pred CCEEEEEcCCc-ChH-HHHHhcC-CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-
Q 002345 695 ATTLVDFGCGS-GSL-LDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 770 (933)
Q Consensus 695 g~rVLDIGCGt-G~f-L~~LAr~-g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp- 770 (933)
+.+|+=+|||. |.. ...|.+. + .+|+++|.+++.++.+++. .+..+.+|..+..
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g---~~V~vid~~~~~~~~~~~~-------------------g~~~~~gd~~~~~~ 96 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYG---KISLGIEIREEAAQQHRSE-------------------GRNVISGDATDPDF 96 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHC---SCEEEEESCHHHHHHHHHT-------------------TCCEEECCTTCHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccC---CeEEEEECCHHHHHHHHHC-------------------CCCEEEcCCCCHHH
Confidence 56899999984 443 3455555 6 6899999999877666421 2455667765421
Q ss_pred --C--CCCCccEEEEccccccCChhHH-HHHHHHHHHccCCC-EEEEEecC
Q 002345 771 --S--RLHGFDIGTCLEVIEHMEEDEA-SQFGNIVLSSFRPR-ILIVSTPN 815 (933)
Q Consensus 771 --~--~~~sFDlVVc~eVLEHLpdD~l-~aL~eeI~rlLKPG-~LIITTPN 815 (933)
. ....+|+|+... +++.. ..+.. ..+.+.|+ .++..+-+
T Consensus 97 l~~~~~~~~ad~vi~~~-----~~~~~~~~~~~-~~~~~~~~~~ii~~~~~ 141 (183)
T 3c85_A 97 WERILDTGHVKLVLLAM-----PHHQGNQTALE-QLQRRNYKGQIAAIAEY 141 (183)
T ss_dssp HHTBCSCCCCCEEEECC-----SSHHHHHHHHH-HHHHTTCCSEEEEEESS
T ss_pred HHhccCCCCCCEEEEeC-----CChHHHHHHHH-HHHHHCCCCEEEEEECC
Confidence 1 235689888742 22222 22233 56667777 55554443
No 406
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=72.56 E-value=1.6 Score=47.25 Aligned_cols=77 Identities=9% Similarity=-0.064 Sum_probs=57.4
Q ss_pred CCCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc-c--
Q 002345 693 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-F-- 769 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaed-L-- 769 (933)
..+..+||+=+|+|.+...+.+.+ .+++.+|.++..++.-++++. ...+++++.+|... +
T Consensus 90 ~n~~~~LDlfaGSGaLgiEaLS~~---d~~vfvE~~~~a~~~L~~Nl~--------------~~~~~~V~~~D~~~~L~~ 152 (283)
T 2oo3_A 90 INLNSTLSYYPGSPYFAINQLRSQ---DRLYLCELHPTEYNFLLKLPH--------------FNKKVYVNHTDGVSKLNA 152 (283)
T ss_dssp HSSSSSCCEEECHHHHHHHHSCTT---SEEEEECCSHHHHHHHTTSCC--------------TTSCEEEECSCHHHHHHH
T ss_pred hcCCCceeEeCCcHHHHHHHcCCC---CeEEEEeCCHHHHHHHHHHhC--------------cCCcEEEEeCcHHHHHHH
Confidence 356679999999999999998854 799999999998887766542 13578999999644 2
Q ss_pred -CCCCCCccEEEEccccc
Q 002345 770 -DSRLHGFDIGTCLEVIE 786 (933)
Q Consensus 770 -p~~~~sFDlVVc~eVLE 786 (933)
..+...||+|++-=-.+
T Consensus 153 l~~~~~~fdLVfiDPPYe 170 (283)
T 2oo3_A 153 LLPPPEKRGLIFIDPSYE 170 (283)
T ss_dssp HCSCTTSCEEEEECCCCC
T ss_pred hcCCCCCccEEEECCCCC
Confidence 12345699998854443
No 407
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=72.12 E-value=4.2 Score=34.99 Aligned_cols=68 Identities=16% Similarity=0.082 Sum_probs=47.7
Q ss_pred CChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcce
Q 002345 392 SFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPIL 471 (933)
Q Consensus 392 ~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~ 471 (933)
.-|...|-.+|..+.+. |.|.... .. |......|.|+|.|- + ++
T Consensus 7 ~d~ks~LqE~~q~~~~~-p~Y~~~~----------------------------~~--Gp~h~~~F~~~v~i~----~-~~ 50 (76)
T 1ekz_A 7 KSPISQVHEIGIKRNMT-VHFKVLR----------------------------EE--GPAHMKNFITACIVG----S-IV 50 (76)
T ss_dssp SCHHHHHHHHHHHTTCC-CEEEESS----------------------------SC--CSSSCSCSSEEEEET----T-EE
T ss_pred CCHHHHHHHHHHHcCCC-CEEEEEE----------------------------eE--CCCCCCcEEEEEEEC----C-EE
Confidence 45899999999999998 9987650 01 222233499999983 2 21
Q ss_pred ecCchhhhhhhhhhHhhhhhHHHHHHH
Q 002345 472 ECSPKEFYKKQNESIENASLKVLSWLN 498 (933)
Q Consensus 472 ~~~~~~~~~~~~dai~~a~l~~l~~~~ 498 (933)
....-+..-+|=|+||..+|..|.
T Consensus 51 ---~~G~G~sKK~Aeq~AA~~aL~~L~ 74 (76)
T 1ekz_A 51 ---TEGEGNGKKVSKKRAAEKMLVELQ 74 (76)
T ss_dssp ---EEECCCSTTSSSHHHHHHHHHHHT
T ss_pred ---EEEeeCCHHHHHHHHHHHHHHHHh
Confidence 223335667899999999998874
No 408
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=70.38 E-value=11 Score=42.21 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=65.8
Q ss_pred CCEEEEEcCCc-ChH-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002345 695 ATTLVDFGCGS-GSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 771 (933)
Q Consensus 695 g~rVLDIGCGt-G~f-L~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~- 771 (933)
..+|+=+|+|. |.. ...|.+.+ ..|++||.+++.++.+++. .+.++.||+.+...
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g---~~vvvId~d~~~v~~~~~~-------------------g~~vi~GDat~~~~L 61 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSG---VKMVVLDHDPDHIETLRKF-------------------GMKVFYGDATRMDLL 61 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT---CCEEEEECCHHHHHHHHHT-------------------TCCCEESCTTCHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHhC-------------------CCeEEEcCCCCHHHH
Confidence 45689999974 443 34555666 7899999999999887531 35678899887532
Q ss_pred ---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHH
Q 002345 772 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAIL 822 (933)
Q Consensus 772 ---~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f 822 (933)
.....|+|++.. +++......-...+.+.|. .++.-+-+.+....+
T Consensus 62 ~~agi~~A~~viv~~-----~~~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~~L 111 (413)
T 3l9w_A 62 ESAGAAKAEVLINAI-----DDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRL 111 (413)
T ss_dssp HHTTTTTCSEEEECC-----SSHHHHHHHHHHHHHHCTTCEEEEEESSHHHHHHH
T ss_pred HhcCCCccCEEEECC-----CChHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence 245788888743 3344444434467788898 666666554443333
No 409
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=69.55 E-value=33 Score=31.97 Aligned_cols=104 Identities=7% Similarity=0.064 Sum_probs=59.9
Q ss_pred CCEEEEEcCCc-Ch-HHHHHhcCCCCCceEEEEeCC-hHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 695 ATTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDIS-QKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 695 g~rVLDIGCGt-G~-fL~~LAr~g~~f~~VtGVDIS-~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
..+|+=+|+|. |. +...|.+.+ .+|+.+|.+ ++.++...+.. ...+.++.||..+...
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g---~~V~vid~~~~~~~~~~~~~~----------------~~~~~~i~gd~~~~~~ 63 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRG---QNVTVISNLPEDDIKQLEQRL----------------GDNADVIPGDSNDSSV 63 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTT---CCEEEEECCCHHHHHHHHHHH----------------CTTCEEEESCTTSHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC---CCEEEEECCChHHHHHHHHhh----------------cCCCeEEEcCCCCHHH
Confidence 34688888862 32 334555666 689999997 45444433221 1246788999876431
Q ss_pred ----CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHH
Q 002345 772 ----RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAIL 822 (933)
Q Consensus 772 ----~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f 822 (933)
.....|+|++.. +++....+.....+.+.|. .++.-.-+.++...+
T Consensus 64 l~~a~i~~ad~vi~~~-----~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~~~~~l 114 (153)
T 1id1_A 64 LKKAGIDRCRAILALS-----DNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKI 114 (153)
T ss_dssp HHHHTTTTCSEEEECS-----SCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHH
T ss_pred HHHcChhhCCEEEEec-----CChHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence 245788888753 3344444444466677676 555545444443433
No 410
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=67.10 E-value=49 Score=33.94 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=55.0
Q ss_pred CEEEEEcCCc-Ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc---CccccC
Q 002345 696 TTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG---SITVFD 770 (933)
Q Consensus 696 ~rVLDIGCGt-G~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~G---DaedLp 770 (933)
.+|.=||+|. |. +...|++.| .+|+.+|.+++.++..++. . .. . . .......... +..+..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g---~~V~~~~r~~~~~~~~~~~-g--~~-~------~-~~~~~~~~~~~~~~~~~~~ 69 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGG---NDVTLIDQWPAHIEAIRKN-G--LI-A------D-FNGEEVVANLPIFSPEEID 69 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHH-C--EE-E------E-ETTEEEEECCCEECGGGCC
T ss_pred CeEEEECcCHHHHHHHHHHHhCC---CcEEEEECCHHHHHHHHhC-C--EE-E------E-eCCCeeEecceeecchhhc
Confidence 4789999984 33 455677776 6899999999877766442 1 00 0 0 0000000000 111111
Q ss_pred CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002345 771 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 815 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN 815 (933)
.....+|+|+..- ++.....+.+.+...++|+.++++..|
T Consensus 70 ~~~~~~d~vi~~v-----~~~~~~~v~~~l~~~l~~~~~iv~~~~ 109 (316)
T 2ew2_A 70 HQNEQVDLIIALT-----KAQQLDAMFKAIQPMITEKTYVLCLLN 109 (316)
T ss_dssp TTSCCCSEEEECS-----CHHHHHHHHHHHGGGCCTTCEEEECCS
T ss_pred ccCCCCCEEEEEe-----ccccHHHHHHHHHHhcCCCCEEEEecC
Confidence 1112689888753 333334444557888888866666655
No 411
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=66.77 E-value=27 Score=34.62 Aligned_cols=101 Identities=15% Similarity=0.091 Sum_probs=61.1
Q ss_pred EEEEEcCCc-Ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC---
Q 002345 697 TLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS--- 771 (933)
Q Consensus 697 rVLDIGCGt-G~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~--- 771 (933)
+|+=+|+|. |. +...|.+.+ ..|+.+|.+++.++...+. ..+.++.||..+...
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g---~~v~vid~~~~~~~~l~~~------------------~~~~~i~gd~~~~~~l~~ 60 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRK---YGVVIINKDRELCEEFAKK------------------LKATIIHGDGSHKEILRD 60 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTT---CCEEEEESCHHHHHHHHHH------------------SSSEEEESCTTSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHH------------------cCCeEEEcCCCCHHHHHh
Confidence 577788763 22 345555666 6899999999877665332 135788899876421
Q ss_pred -CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHH
Q 002345 772 -RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQ 823 (933)
Q Consensus 772 -~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~ 823 (933)
....+|+|++. ++++....+...+.+.+.|. .++.-+-+.++...+.
T Consensus 61 a~i~~ad~vi~~-----~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~ 109 (218)
T 3l4b_C 61 AEVSKNDVVVIL-----TPRDEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFK 109 (218)
T ss_dssp HTCCTTCEEEEC-----CSCHHHHHHHHHHHHHTSCCCEEEECCCSGGGHHHHH
T ss_pred cCcccCCEEEEe-----cCCcHHHHHHHHHHHHHcCCCeEEEEEeCcchHHHHH
Confidence 24578988875 23344444444455655666 5555455544444443
No 412
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=65.46 E-value=79 Score=34.56 Aligned_cols=119 Identities=17% Similarity=0.176 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCcChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhh------hhccc--ccCC-C--CCCCccEEEE
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK------LSKKL--DAAV-P--CTDVKSAVLF 762 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~------ls~~~--~~~~-P--r~~~~nVefi 762 (933)
+...|+-+|||-=.....|...+.....++=||. ++.++.=++.+... ..... .... . .....+..++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 4679999999977766666653211256777775 44444433333320 00000 0000 0 0013568899
Q ss_pred EcCccccC----------CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe
Q 002345 763 DGSITVFD----------SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 813 (933)
Q Consensus 763 ~GDaedLp----------~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITT 813 (933)
-+|+.+.. +.....-++++-.|+.+++++....+.+.+.+...+|.+++-.
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~~~~i~yE 229 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYE 229 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCCceEEEEe
Confidence 99987631 2223455888888999999989888888888888777443333
No 413
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=65.30 E-value=4.4 Score=45.22 Aligned_cols=61 Identities=26% Similarity=0.365 Sum_probs=53.5
Q ss_pred CCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccccccCC
Q 002345 580 PSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELP 644 (933)
Q Consensus 580 p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~r~lP 644 (933)
+..|..|.|+|+.++ +|+.++.. ....|.|.+|.+.|.+-++..+.-|.+|....+..+.|
T Consensus 161 ~~~gD~V~i~y~g~~--dG~~fd~~--~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp 221 (392)
T 1t11_A 161 AENGKRVSIDFVGSI--DGVEFEGG--KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFP 221 (392)
T ss_dssp CCTTCEEEEEEEEES--SSSCCTTC--EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECC
T ss_pred CCCCCEEEEEEEEEE--CCEEccCC--CccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCc
Confidence 689999999999983 68887765 57899999999999999999999999999988886544
No 414
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=61.54 E-value=6.3 Score=44.14 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCc-ChHHHHH-hcCCCCCceEEEEeCChHHHHHHHH
Q 002345 694 CATTLVDFGCGS-GSLLDSL-LDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 694 ~g~rVLDIGCGt-G~fL~~L-Ar~g~~f~~VtGVDIS~emLe~Ark 737 (933)
++.+|+=+|+|. |.....+ ...| .+|+++|.++.-++.+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lG---a~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLG---AKTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHT---CEEEEECSSGGGHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHH
Confidence 568999999994 4444433 3455 689999999988877754
No 415
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=61.53 E-value=6.8 Score=32.99 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=46.9
Q ss_pred ChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCccee
Q 002345 393 FPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILE 472 (933)
Q Consensus 393 ~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~ 472 (933)
.|...|-.+|..+.+..|.|.... .. |......|.|+|.|-.+ +
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~----------------------------~~--Gp~h~~~F~~~v~v~~~----~-- 44 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQ----------------------------ES--GPPHKREFTITCRVETF----V-- 44 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEE----------------------------EE--SCGGGCEEEEEEEETTE----E--
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEE----------------------------eE--CCCCCCeEEEEEEECCE----E--
Confidence 488999999999999999998650 01 11122349999998531 1
Q ss_pred cCchhhhhhhhhhHhhhhhHHHHHHH
Q 002345 473 CSPKEFYKKQNESIENASLKVLSWLN 498 (933)
Q Consensus 473 ~~~~~~~~~~~dai~~a~l~~l~~~~ 498 (933)
. ...=+..-+|=|+||..+|..|.
T Consensus 45 ~--~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 45 E--TGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp E--EEEESSHHHHHHHHHHHHHHHHH
T ss_pred E--EeecCCHHHHHHHHHHHHHHHHh
Confidence 1 22234456799999999998774
No 416
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=60.27 E-value=24 Score=38.53 Aligned_cols=137 Identities=12% Similarity=0.065 Sum_probs=69.5
Q ss_pred hhhhcccCC---chHHHHHHHHHHH-----hhcCCCCEEEEEcCCcChHHHHHh----cCCC-CCceEEEEeCCh-----
Q 002345 668 RMEQALFSP---PLSKQRVEYALQH-----IKESCATTLVDFGCGSGSLLDSLL----DYPT-ALEKIVGVDISQ----- 729 (933)
Q Consensus 668 r~e~~~F~P---PLy~qRve~Ild~-----L~~~~g~rVLDIGCGtG~fL~~LA----r~g~-~f~~VtGVDIS~----- 729 (933)
.....+|+. .+.+.++-|+... ......-+|||+|=|+|....... +... .--+++.+|..+
T Consensus 62 ~f~e~YhS~~~GAl~Es~hVFi~~~~L~~r~~~~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~ 141 (308)
T 3vyw_A 62 TYGEPYHSQTAGAIRESLYKFVRPSRILEKAKERKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFP 141 (308)
T ss_dssp TTTEESSCTTTCHHHHHHHHTHHHHTHHHHHHHCSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCC
T ss_pred ccCCccCCCCCcHHHHHHHHHhccCCchHHhcCCCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhH
Confidence 344455553 3556666665432 122334589999999998653221 2121 112456777421
Q ss_pred ---HHH-HHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--CCCCccEEEEccccccCChhHH--HHHHHHHH
Q 002345 730 ---KSL-SRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS--RLHGFDIGTCLEVIEHMEEDEA--SQFGNIVL 801 (933)
Q Consensus 730 ---emL-e~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~--~~~sFDlVVc~eVLEHLpdD~l--~aL~eeI~ 801 (933)
+.+ +.....++. .... ..+.-.++++.||+.+.-. ....||+|+.-..=-.-. +++ ..+.+.++
T Consensus 142 ~~~~~~~~l~~~l~~~-~p~~------~~~~v~L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~kN-PeLWs~e~f~~l~ 213 (308)
T 3vyw_A 142 ILPEPYREIHEFLLER-VPEY------EGERLSLKVLLGDARKRIKEVENFKADAVFHDAFSPYKN-PELWTLDFLSLIK 213 (308)
T ss_dssp CCCTTSHHHHHHHHHH-CSEE------ECSSEEEEEEESCHHHHGGGCCSCCEEEEEECCSCTTTS-GGGGSHHHHHHHH
T ss_pred hchHhHHHHHHHHHHh-Cccc------cCCcEEEEEEechHHHHHhhhcccceeEEEeCCCCcccC-cccCCHHHHHHHH
Confidence 111 111111111 0000 1233357889999876322 334799998854211111 111 23445699
Q ss_pred HccCCCEEEEE
Q 002345 802 SSFRPRILIVS 812 (933)
Q Consensus 802 rlLKPG~LIIT 812 (933)
++++||..+.|
T Consensus 214 ~~~~pgg~laT 224 (308)
T 3vyw_A 214 ERIDEKGYWVS 224 (308)
T ss_dssp TTEEEEEEEEE
T ss_pred HHhCCCcEEEE
Confidence 99999977665
No 417
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=59.07 E-value=11 Score=41.74 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=47.5
Q ss_pred CCCCCCccCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccc---cchhhHHhhhhccccCCcccc
Q 002345 572 GGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGA---VIPQVEVVTAQMSVGQSACFC 640 (933)
Q Consensus 572 ~~~d~~~~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~---~shhLkvlVtq~reGqsiff~ 640 (933)
+.+.+..-|..|+.|.++|+..| +|+-+++ .+|+|.+|.|. |...++..+..|+.|.-+...
T Consensus 154 ~~g~~~~~p~~g~~V~v~y~g~~--~g~~f~~-----~~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~ 218 (457)
T 1kt0_A 154 RKGEGYSNPNEGATVEIHLEGRC--GGRMFDC-----RDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILY 218 (457)
T ss_dssp ECCBCSCCCCTTCEEEEEEEEEE--TTEEEEE-----EEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEE
T ss_pred ecCCCCCCCCCCCEEEEEEEEEe--CCeEEec-----CceEEEeCCCccccCChHHHHHHHhCCCCCEEEEE
Confidence 33455568999999999999998 5755443 46999999764 788888889999997665433
No 418
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=58.62 E-value=37 Score=31.78 Aligned_cols=99 Identities=20% Similarity=0.236 Sum_probs=54.5
Q ss_pred CCCCEEEEEcCCc-ChH-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 693 SCATTLVDFGCGS-GSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 693 ~~g~rVLDIGCGt-G~f-L~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
..+.+|+=+|+|. |.. +..|.+.+ .+|+++|.+++.++.+++ ...+.++.+|..+..
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g---~~V~vid~~~~~~~~~~~------------------~~g~~~~~~d~~~~~ 75 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSG---HSVVVVDKNEYAFHRLNS------------------EFSGFTVVGDAAEFE 75 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCGGGGGGSCT------------------TCCSEEEESCTTSHH
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHh------------------cCCCcEEEecCCCHH
Confidence 3567999999984 443 34555665 689999999865443310 113445667754421
Q ss_pred ---C-CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002345 771 ---S-RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817 (933)
Q Consensus 771 ---~-~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~e 817 (933)
. ....+|+|+..- +.+........+.+.+.|. .++..+-+..
T Consensus 76 ~l~~~~~~~ad~Vi~~~-----~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~ 122 (155)
T 2g1u_A 76 TLKECGMEKADMVFAFT-----NDDSTNFFISMNARYMFNVENVIARVYDPE 122 (155)
T ss_dssp HHHTTTGGGCSEEEECS-----SCHHHHHHHHHHHHHTSCCSEEEEECSSGG
T ss_pred HHHHcCcccCCEEEEEe-----CCcHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 1 134689888753 2222222222355555666 4544444433
No 419
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=58.59 E-value=86 Score=31.58 Aligned_cols=77 Identities=8% Similarity=0.041 Sum_probs=52.6
Q ss_pred CCCEEEEEcCC--cC--h-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc
Q 002345 694 CATTLVDFGCG--SG--S-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 768 (933)
Q Consensus 694 ~g~rVLDIGCG--tG--~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaed 768 (933)
.++++|=.|++ .| . +...|++.| .+|+.+|.++...+.+.+.... ....++.++.+|+.+
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~------------~~~~~~~~~~~D~~~ 70 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAG---ARLIFTYAGERLEKSVHELAGT------------LDRNDSIILPCDVTN 70 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHHHHHT------------SSSCCCEEEECCCSS
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCC---CEEEEecCchHHHHHHHHHHHh------------cCCCCceEEeCCCCC
Confidence 56789999976 33 3 567888887 7899999987666655443321 122368899999987
Q ss_pred cCC----------CCCCccEEEEcccc
Q 002345 769 FDS----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 769 Lp~----------~~~sFDlVVc~eVL 785 (933)
... ..+..|+++.+-.+
T Consensus 71 ~~~v~~~~~~~~~~~g~id~li~~Ag~ 97 (266)
T 3oig_A 71 DAEIETCFASIKEQVGVIHGIAHCIAF 97 (266)
T ss_dssp SHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCeeEEEEcccc
Confidence 542 12478999886544
No 420
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=57.72 E-value=11 Score=39.47 Aligned_cols=47 Identities=23% Similarity=0.220 Sum_probs=37.0
Q ss_pred HHhhcCCCCEEEEEcCC-cChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 688 QHIKESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 688 d~L~~~~g~rVLDIGCG-tG~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
+.....++.+||=+|+| .|.++..+++..+ .+|+++| +++-++.+++
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~~~~~~~~~ 183 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-ASLSQALAAK 183 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SSCCHHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-ChhhHHHHHH
Confidence 44555678999999997 4777778877544 5999999 9988888865
No 421
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=57.60 E-value=45 Score=33.31 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=62.4
Q ss_pred CCEEEEEcCCc-Ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--
Q 002345 695 ATTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 770 (933)
Q Consensus 695 g~rVLDIGCGt-G~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp-- 770 (933)
..+|+=+|+|. |. +...|.+.+ . |+++|.+++.++.++ ..+.++.||+.+..
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g---~-v~vid~~~~~~~~~~--------------------~~~~~i~gd~~~~~~l 64 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSE---V-FVLAEDENVRKKVLR--------------------SGANFVHGDPTRVSDL 64 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSE---E-EEEESCGGGHHHHHH--------------------TTCEEEESCTTCHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCC---e-EEEEECCHHHHHHHh--------------------cCCeEEEcCCCCHHHH
Confidence 45799999863 32 223344444 5 999999998776552 14678899987643
Q ss_pred --CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHH
Q 002345 771 --SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQ 823 (933)
Q Consensus 771 --~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~ 823 (933)
......|+|++.. +++....+.-...+.+.|+ .++.-+-+.++...+.
T Consensus 65 ~~a~i~~ad~vi~~~-----~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~ 115 (234)
T 2aef_A 65 EKANVRGARAVIVDL-----ESDSETIHCILGIRKIDESVRIIAEAERYENIEQLR 115 (234)
T ss_dssp HHTTCTTCSEEEECC-----SCHHHHHHHHHHHHHHCSSSEEEEECSSGGGHHHHH
T ss_pred HhcCcchhcEEEEcC-----CCcHHHHHHHHHHHHHCCCCeEEEEECCHhHHHHHH
Confidence 1245789888752 3344444444467778888 6666666655544443
No 422
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=57.05 E-value=11 Score=34.71 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=48.0
Q ss_pred CChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcce
Q 002345 392 SFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPIL 471 (933)
Q Consensus 392 ~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~ 471 (933)
.-|+..|-.+|..+.+..|.|... .. |......|.|+|.|-.+
T Consensus 17 ~d~Kt~LqE~~Q~~~~~~P~Y~~~-----------------------------~~--Gp~H~~~F~~~V~v~g~------ 59 (103)
T 2l2n_A 17 YVFKSRLQEYAQKYKLPTPVYEIV-----------------------------KE--GPSHKSLFQSTVILDGV------ 59 (103)
T ss_dssp --CTTHHHHHHHHTTCCCCEEEEE-----------------------------EE--SCSSSCEEEEEEEETTE------
T ss_pred CCHHHHHHHHHHHcCCCCCeEEEE-----------------------------eE--cCCCCCeEEEEEEECCE------
Confidence 357889999999999999998766 01 22223349999988532
Q ss_pred ecCchhhhhhhhhhHhhhhhHHHHHHH
Q 002345 472 ECSPKEFYKKQNESIENASLKVLSWLN 498 (933)
Q Consensus 472 ~~~~~~~~~~~~dai~~a~l~~l~~~~ 498 (933)
.+....-+++..+|=|+||.++|.+|.
T Consensus 60 ~~~~G~G~~SKK~Aeq~AA~~AL~~L~ 86 (103)
T 2l2n_A 60 RYNSLPGFFNRKAAEQSAAEVALRELA 86 (103)
T ss_dssp EEECCSCBSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 122222225667899999999999986
No 423
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=57.03 E-value=45 Score=35.65 Aligned_cols=93 Identities=18% Similarity=0.123 Sum_probs=56.2
Q ss_pred CCEEEEEcCCc--ChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 695 ATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 695 g~rVLDIGCGt--G~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
..+|.=||+|. +.+...|.+.|. ..+|+++|.+++.++.+++. +. +.-...|..+. .
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~-~~~V~~~dr~~~~~~~a~~~----------------G~--~~~~~~~~~~~--~ 91 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINPESISKAVDL----------------GI--IDEGTTSIAKV--E 91 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCHHHHHHHHHT----------------TS--CSEEESCTTGG--G
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHC----------------CC--cchhcCCHHHH--h
Confidence 46899999994 345667777761 12899999999888777431 11 00112233220 1
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 813 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITT 813 (933)
....|+|+.. +++.....+.+.+...++|+.+++.+
T Consensus 92 ~~~aDvVila-----vp~~~~~~vl~~l~~~l~~~~iv~d~ 127 (314)
T 3ggo_A 92 DFSPDFVMLS-----SPVRTFREIAKKLSYILSEDATVTDQ 127 (314)
T ss_dssp GGCCSEEEEC-----SCGGGHHHHHHHHHHHSCTTCEEEEC
T ss_pred hccCCEEEEe-----CCHHHHHHHHHHHhhccCCCcEEEEC
Confidence 2457888765 34333334445688889999655544
No 424
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=57.00 E-value=7 Score=33.70 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=46.8
Q ss_pred hhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcceec
Q 002345 394 PREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILEC 473 (933)
Q Consensus 394 pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~~ 473 (933)
|+..|-.+|..+.+..|.|.... .. |......|.|+|.|-.+ + +
T Consensus 6 ~Kt~LqE~~q~~~~~~p~Y~~~~----------------------------~~--Gp~h~~~F~~~v~v~g~----~--~ 49 (76)
T 3adj_A 6 CKNLLQEYAQKMNYAIPLYQCQK----------------------------VE--TLGRVTQFTCTVEIGGI----K--Y 49 (76)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEEE----------------------------EE--CSSSCEEEEEEEEETTE----E--E
T ss_pred HHHHHHHHHHHhCCCCCeEEEee----------------------------cc--CCCCCCcEEEEEEECCE----E--E
Confidence 68899999999999999987650 01 11122339999998432 1 1
Q ss_pred CchhhhhhhhhhHhhhhhHHHHHHH
Q 002345 474 SPKEFYKKQNESIENASLKVLSWLN 498 (933)
Q Consensus 474 ~~~~~~~~~~dai~~a~l~~l~~~~ 498 (933)
....-+..-+|=|+||.++|.+|.
T Consensus 50 -~~G~G~sKK~Aeq~AA~~al~~L~ 73 (76)
T 3adj_A 50 -TGAATRTKKDAEISAGRTALLAIQ 73 (76)
T ss_dssp -ECCCBSSHHHHHHHHHHHHHHHHH
T ss_pred -EEeccCCHHHHHHHHHHHHHHHHh
Confidence 112335566899999999999885
No 425
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=55.81 E-value=52 Score=32.91 Aligned_cols=76 Identities=21% Similarity=0.187 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.+++||=.|++.|. +...|++.| .+|+.+|.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 71 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREG---AAVVVADINAEAAEAVAKQIVA-------------DGGTAISVAVDVSDPE 71 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCEEEEEECCTTSHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHh-------------cCCcEEEEEccCCCHH
Confidence 56789999987653 567778887 7899999999888777665542 1246889999998753
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+..|+++.+-.+
T Consensus 72 ~~~~~~~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 72 SAKAMADRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 2 12478999987644
No 426
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=55.41 E-value=11 Score=41.18 Aligned_cols=49 Identities=10% Similarity=-0.001 Sum_probs=37.8
Q ss_pred HHhhcCCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 688 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 688 d~L~~~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
+.....++.+||-+|+|. |.++..+++..+ ..+|+++|.+++.++.+++
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~ 228 (398)
T 2dph_A 179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLSD 228 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHT
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH
Confidence 445556789999999986 888888877532 2389999999998888853
No 427
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=55.34 E-value=8.1 Score=36.12 Aligned_cols=87 Identities=11% Similarity=0.182 Sum_probs=57.8
Q ss_pred CCcceeeccccCCCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeE
Q 002345 379 LPMAFTTRTNWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRC 458 (933)
Q Consensus 379 lp~~~t~~~~w~g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c 458 (933)
||....---+|..--|+..|-.+|..+++ .|.|... .. |......|.|
T Consensus 13 ~d~~~~~~~~~~~~d~Kt~LqE~~Qk~~~-~p~Y~~~-----------------------------~~--Gp~H~~~F~~ 60 (113)
T 1uil_A 13 VDLNAGLHGNWTLENAKARLNQYFQKEKI-QGEYKYT-----------------------------QV--GPDHNRSFIA 60 (113)
T ss_dssp CCSSHHHHCCCCHHHHHHHHHHHHHHSCC-CCCCEEE-----------------------------EE--SCSTTCEEEE
T ss_pred CCcCcccccccccCCHHHHHHHHHHHCCC-CCeEEEe-----------------------------eE--CCCCCCcEEE
Confidence 55555445678777899999999999998 8988722 01 1122334999
Q ss_pred EEEEeeccCCcceecCchhhhhhhhhhHhhhhhHHHHHHHh
Q 002345 459 EVKIFSKSRDPILECSPKEFYKKQNESIENASLKVLSWLNA 499 (933)
Q Consensus 459 ~v~~~s~~~~~~~~~~~~~~~~~~~dai~~a~l~~l~~~~~ 499 (933)
+|.|.-+..+-.+ -....-+..-+|=|+||.++|..|..
T Consensus 61 ~V~v~~~~~~~~~--~~~G~G~SKK~AEq~AA~~AL~~L~~ 99 (113)
T 1uil_A 61 EMTIYIKQLGRRI--FAREHGSNKKLAAQSCALSLVRQLYH 99 (113)
T ss_dssp EEEEEETTTTEEE--EEECCCSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeeccCCEE--EEEEeeCCHHHHHHHHHHHHHHHHHh
Confidence 9999533111111 11233466778999999999998864
No 428
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=55.09 E-value=5.9 Score=44.71 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=51.9
Q ss_pred cCCCCcEEEEEEEEEEEEeCchhhHHhhcccceeEeecccccchhhHHhhhhccccCCccccccC
Q 002345 579 YPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKEL 643 (933)
Q Consensus 579 ~p~~gs~~~i~y~~~l~~~g~~~~~~~e~~~~fef~~g~~~~shhLkvlVtq~reGqsiff~r~l 643 (933)
-+..|..|.|+|++++ +|+.++... ..+|.|.+|.+.|.+.++..+.-|.+|....+..+.
T Consensus 157 ~~~~gD~V~i~y~g~~--dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~ 217 (432)
T 1w26_A 157 AVEAEDRVTIDFTGSV--DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTF 217 (432)
T ss_dssp CCCTTCEEEECEEEES--SSCBCSSCC--CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEEC
T ss_pred CCCCCCEEEEEEEEee--CCeEccCCC--ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECC
Confidence 4689999999999983 688766543 689999999999999999999999999988776543
No 429
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=54.64 E-value=11 Score=33.59 Aligned_cols=75 Identities=19% Similarity=0.093 Sum_probs=53.0
Q ss_pred ccccCCCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeec
Q 002345 386 RTNWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSK 465 (933)
Q Consensus 386 ~~~w~g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~ 465 (933)
--.|...-|+..|-.+|....+..|.|.... .. |..-...|.|+|.|-.+
T Consensus 9 ~~~~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~----------------------------~~--Gp~H~~~F~~~v~v~g~ 58 (88)
T 3adl_A 9 GLVPRGSHEVGALQELVVQKGWRLPEYTVTQ----------------------------ES--GPAHRKEFTMTCRVERF 58 (88)
T ss_dssp CCCCTTCCHHHHHHHHHHHTTCCCCEEEEEE----------------------------EE--SCTTSCEEEEEEEETTE
T ss_pred CCCCCCCCHHHHHHHHHHHcCCCCCEEEEEE----------------------------eE--CCCCCCeEEEEEEECCE
Confidence 3467778899999999999999999998750 01 11223349999998531
Q ss_pred cCCcceecCchhhhhhhhhhHhhhhhHHHHHHH
Q 002345 466 SRDPILECSPKEFYKKQNESIENASLKVLSWLN 498 (933)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~dai~~a~l~~l~~~~ 498 (933)
+ . ...=+..-+|=|+||.++|..|.
T Consensus 59 ----~--~--~G~G~SKK~Aeq~AA~~AL~~L~ 83 (88)
T 3adl_A 59 ----I--E--IGSGTSKKLAKRNAAAKMLLRVH 83 (88)
T ss_dssp ----E--E--EEEESSHHHHHHHHHHHHHHHHH
T ss_pred ----E--E--EEeeCCHHHHHHHHHHHHHHHHH
Confidence 1 1 12234445899999999999885
No 430
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=53.13 E-value=14 Score=39.92 Aligned_cols=49 Identities=24% Similarity=0.289 Sum_probs=37.5
Q ss_pred HHhhcCCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 688 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 688 d~L~~~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
+.....++.+||-+|+|. |.++..+++..+ ..+|+++|.+++.++.+++
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~~ 233 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ 233 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH
Confidence 344456788999999985 777777777432 2379999999999988864
No 431
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.13 E-value=25 Score=33.34 Aligned_cols=92 Identities=25% Similarity=0.255 Sum_probs=54.7
Q ss_pred cCCCChHhHHHHhccCceeEEEeeeec-cccCCCCccccCCCCCceEEEeeec--CCceeeeccccccchHHHHHHHHHH
Q 002345 13 KMKLTPKAIIVQKFGRNAQFTVDEVQD-VVQNGCPGLAIPQKGPCLYRCSLQL--PEFSVVSETFKKKKDAEQSAAEKAL 89 (933)
Q Consensus 13 ~~~~tpka~~~q~~g~~~~~~~~ev~~-~~~~~~~~~~~~q~~~~~~~c~l~l--p~~~v~~~~~~~kkdaeq~aa~~al 89 (933)
+.-+-||.++|+-+..-.. ..-+++ ..|.-|- |+-.=.|+|.| |+=--+.+.=+||-|||.-||-.|+
T Consensus 14 ~~Fp~PKnLL~~ViqrA~~--ss~~kd~l~~~~t~-------g~k~K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC 84 (119)
T 2db2_A 14 KEFPQPKNLLNSVIGRALG--ISHAKDKLVYVHTN-------GPKKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAAC 84 (119)
T ss_dssp TTCSCHHHHHHHHHHHHTT--HHHHHHHEEEEECC-------SSSSEEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHc--cCchhhheeEEeec-------CCceeEEEEEecCCCcEEEEeeccchHHHHHHHHHHHH
Confidence 3445899999988765411 011111 1111122 22334677765 7743333445899999999998887
Q ss_pred HH---cCCCCCCCCCChHHHHHHHHHH
Q 002345 90 EK---LGIDPSPNVPSAEEAWDKLIAS 113 (933)
Q Consensus 90 ~k---~g~~~~~~~~~~~e~~~~l~~~ 113 (933)
+| ||.=...+.|-.-.-.+.+..|
T Consensus 85 ~kLK~Lgll~p~n~pl~hakY~~~~~~ 111 (119)
T 2db2_A 85 QLFKGWGLLGPRNELFDAAKYRVLADR 111 (119)
T ss_dssp HHHHHHTSSCTTCCCCCHHHHHHHHHT
T ss_pred HHHHHcCccCCCCCcchHHHHHHHHHh
Confidence 65 7886666777555555555554
No 432
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=52.40 E-value=17 Score=34.93 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=56.7
Q ss_pred cCCcceeeccccCCCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCcee
Q 002345 378 ELPMAFTTRTNWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVR 457 (933)
Q Consensus 378 ~lp~~~t~~~~w~g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 457 (933)
+.+..|..+..+...-|..+|-.+|..+.+..|.|.... . .....|.
T Consensus 12 ~~~~~~~r~~~~~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~-----------------------------~----~H~~~F~ 58 (128)
T 1whn_A 12 KMAIRFDRRAYPPQITPKMCLLEWCRREKLPQPVYETVQ-----------------------------R----TIDRMFC 58 (128)
T ss_dssp EECCCCCGGGSCTTCCHHHHHHHHHHHTTCCCCCCCEEE-----------------------------C----SSSCCEE
T ss_pred eeehhhhhhhcccCCCHHHHHHHHHHHcCCCCCeEEEEe-----------------------------e----cCCCcEE
Confidence 344455445555667899999999999999999987761 0 1123399
Q ss_pred EEEEEeeccCCcceecCchhhh-hhhhhhHhhhhhHHHHHHH
Q 002345 458 CEVKIFSKSRDPILECSPKEFY-KKQNESIENASLKVLSWLN 498 (933)
Q Consensus 458 c~v~~~s~~~~~~~~~~~~~~~-~~~~dai~~a~l~~l~~~~ 498 (933)
|+|.|-.+. + ....- +..-+|=|+||.++|.+|.
T Consensus 59 v~V~v~g~~------~-g~G~G~~SKK~AEQ~AA~~AL~~L~ 93 (128)
T 1whn_A 59 SVVTVAEQK------Y-QSTLWDKSKKLAEQTAAIVCLRSQG 93 (128)
T ss_dssp EEEEETTEE------E-EESSCBSSHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCEE------E-EEEeccCCHHHHHHHHHHHHHHHHh
Confidence 999884321 2 12334 6777899999999999984
No 433
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=52.27 E-value=47 Score=33.78 Aligned_cols=75 Identities=16% Similarity=0.067 Sum_probs=55.7
Q ss_pred CCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 693 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
..++++|=.|++.|. +...|++.| .+|+.+|.+++.++...+.+.. ...++.++.+|+.+.
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~Dv~~~ 72 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQG---ADLVLAARTVERLEDVAKQVTD-------------TGRRALSVGTDITDD 72 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCCEEEEECCTTCH
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeCCHHHHHHHHHHHHh-------------cCCcEEEEEcCCCCH
Confidence 357889999997764 567788887 7899999999888777665542 124688999999875
Q ss_pred CC----------CCCCccEEEEcc
Q 002345 770 DS----------RLHGFDIGTCLE 783 (933)
Q Consensus 770 p~----------~~~sFDlVVc~e 783 (933)
.. ..+..|+++.+-
T Consensus 73 ~~v~~~~~~~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 73 AQVAHLVDETMKAYGRVDVVINNA 96 (264)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEECC
T ss_pred HHHHHHHHHHHHHcCCCcEEEECC
Confidence 32 135789999876
No 434
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=52.02 E-value=16 Score=32.19 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=48.0
Q ss_pred CCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcc
Q 002345 391 GSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPI 470 (933)
Q Consensus 391 g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~ 470 (933)
+.-|...|-.+|..+. ..|.|... . .. |......|.|+|.|- + +
T Consensus 7 ~~d~Ks~LqE~~q~~~-~~p~Y~~~--~--------------------------~~--Gp~h~~~F~~~v~v~----~-~ 50 (84)
T 2dix_A 7 GKTPIQVLHEYGMKTK-NIPVYECE--R--------------------------SD--VQIHVPTFTFRVTVG----D-I 50 (84)
T ss_dssp CCCHHHHHHHHHHHTT-CCCEEEEE--E--------------------------EE--CSSSSCEEEEEEEET----T-E
T ss_pred CCCHHHHHHHHHHHcC-CCCeEEEE--E--------------------------eE--CCCCCCeEEEEEEEC----C-E
Confidence 3468899999998887 57888764 0 01 222233499999983 2 1
Q ss_pred eecCchhhhhhhhhhHhhhhhHHHHHHH
Q 002345 471 LECSPKEFYKKQNESIENASLKVLSWLN 498 (933)
Q Consensus 471 ~~~~~~~~~~~~~dai~~a~l~~l~~~~ 498 (933)
+ ....-+..-+|=|+||.++|..|.
T Consensus 51 ~---~~G~G~SKK~Aeq~AA~~aL~~L~ 75 (84)
T 2dix_A 51 T---CTGEGTSKKLAKHRAAEAAINILK 75 (84)
T ss_dssp E---EEECSSCTTHHHHHHHHHHHHHHH
T ss_pred E---EEeeeCCHHHHHHHHHHHHHHHHh
Confidence 1 234456677899999999999885
No 435
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=51.86 E-value=66 Score=32.82 Aligned_cols=87 Identities=13% Similarity=0.139 Sum_probs=53.2
Q ss_pred EEEEEcCCc-Ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCC
Q 002345 697 TLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 774 (933)
Q Consensus 697 rVLDIGCGt-G~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~ 774 (933)
+|.=||||. |. +...|.+.+ .+|+++|.+++.++.+++. +... . ...|..+. .
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g---~~V~~~~~~~~~~~~~~~~----------------g~~~-~-~~~~~~~~----~ 56 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRG---HYLIGVSRQQSTCEKAVER----------------QLVD-E-AGQDLSLL----Q 56 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHT----------------TSCS-E-EESCGGGG----T
T ss_pred EEEEEcCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHhC----------------CCCc-c-ccCCHHHh----C
Confidence 577899985 33 455666766 5899999999877766321 1100 1 12233322 4
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe
Q 002345 775 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 813 (933)
Q Consensus 775 sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITT 813 (933)
..|+|+.. +++.....+.+.+...++|+.+++.+
T Consensus 57 ~~D~vi~a-----v~~~~~~~~~~~l~~~~~~~~~vv~~ 90 (279)
T 2f1k_A 57 TAKIIFLC-----TPIQLILPTLEKLIPHLSPTAIVTDV 90 (279)
T ss_dssp TCSEEEEC-----SCHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred CCCEEEEE-----CCHHHHHHHHHHHHhhCCCCCEEEEC
Confidence 67888774 44444444445577788889666666
No 436
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=51.07 E-value=63 Score=33.42 Aligned_cols=87 Identities=13% Similarity=0.253 Sum_probs=53.6
Q ss_pred CEEEEEcC-Cc-Ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 696 TTLVDFGC-GS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 696 ~rVLDIGC-Gt-G~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.+|.=||+ |. |. +...|++.+ .+|+++|.+++.++.+++ . + +.. .+..+ .
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g---~~V~~~~r~~~~~~~~~~-~---------------g---~~~--~~~~~---~ 64 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSA---HHLAAIEIAPEGRDRLQG-M---------------G---IPL--TDGDG---W 64 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSS---SEEEEECCSHHHHHHHHH-T---------------T---CCC--CCSSG---G
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHh-c---------------C---CCc--CCHHH---H
Confidence 47999999 84 33 556677776 689999999887766533 1 1 111 12211 2
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEec
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 814 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTP 814 (933)
....|+|+.. ++++....+.+.+...++|+.+++++-
T Consensus 65 ~~~aDvVi~a-----v~~~~~~~v~~~l~~~l~~~~ivv~~s 101 (286)
T 3c24_A 65 IDEADVVVLA-----LPDNIIEKVAEDIVPRVRPGTIVLILD 101 (286)
T ss_dssp GGTCSEEEEC-----SCHHHHHHHHHHHGGGSCTTCEEEESC
T ss_pred hcCCCEEEEc-----CCchHHHHHHHHHHHhCCCCCEEEECC
Confidence 2467888764 444444444455777888886666643
No 437
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=51.05 E-value=39 Score=38.29 Aligned_cols=98 Identities=18% Similarity=0.198 Sum_probs=62.8
Q ss_pred CCEEEEEcCCc-ChHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002345 695 ATTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 771 (933)
Q Consensus 695 g~rVLDIGCGt-G~fL-~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~- 771 (933)
.++|+=+|||. |..+ ..|...+ ..|+.||.+++.++.+.+.+ .+..++||+.+...
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~---~~v~vId~d~~~~~~~~~~~------------------~~~~i~Gd~~~~~~L 61 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGEN---NDITIVDKDGDRLRELQDKY------------------DLRVVNGHASHPDVL 61 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTT---EEEEEEESCHHHHHHHHHHS------------------SCEEEESCTTCHHHH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHhc------------------CcEEEEEcCCCHHHH
Confidence 46788899983 4433 4455555 78999999999988775532 46788999987542
Q ss_pred ---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002345 772 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 818 (933)
Q Consensus 772 ---~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~ef 818 (933)
.-...|++++. ..+|+...+.-.+++.+.|. ..+.-.-+.+|
T Consensus 62 ~~Agi~~ad~~ia~-----t~~De~Nl~~~~~Ak~~~~~~~~iar~~~~~~ 107 (461)
T 4g65_A 62 HEAGAQDADMLVAV-----TNTDETNMAACQVAFTLFNTPNRIARIRSPQY 107 (461)
T ss_dssp HHHTTTTCSEEEEC-----CSCHHHHHHHHHHHHHHHCCSSEEEECCCHHH
T ss_pred HhcCCCcCCEEEEE-----cCChHHHHHHHHHHHHhcCCccceeEeccchh
Confidence 24578988873 22355444444456666555 44444444333
No 438
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=50.53 E-value=11 Score=33.78 Aligned_cols=70 Identities=19% Similarity=0.109 Sum_probs=48.9
Q ss_pred CCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcc
Q 002345 391 GSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPI 470 (933)
Q Consensus 391 g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~ 470 (933)
|--|...|-.+|..+.+..|.|.... .. |-.....|.|+|.|-. .+
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~----------------------------~~--Gp~H~~~F~~~v~v~g----~~ 50 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLS----------------------------ER--GMPRRREFVMQVKVGN----EV 50 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEE----------------------------EE--SCSTTCEEEEEEEETT----EE
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEE----------------------------eE--CCCCCCeEEEEEEECC----EE
Confidence 34588999999999999999997650 01 2222234999999842 11
Q ss_pred eecCchhhhhhhhhhHhhhhhHHHHHHH
Q 002345 471 LECSPKEFYKKQNESIENASLKVLSWLN 498 (933)
Q Consensus 471 ~~~~~~~~~~~~~dai~~a~l~~l~~~~ 498 (933)
....=+...+|=|+||.++|.+|.
T Consensus 51 ----~~G~G~SKK~Aeq~AA~~AL~~L~ 74 (89)
T 1uhz_A 51 ----ATGTGPNKKIAKKNAAEAMLLQLG 74 (89)
T ss_dssp ----EEEEESSHHHHHHHHHHHHHHHHT
T ss_pred ----EEEeeCCHHHHHHHHHHHHHHHHh
Confidence 222335557899999999999984
No 439
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=50.05 E-value=21 Score=37.86 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=38.1
Q ss_pred HHhhcCCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 688 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 688 d~L~~~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
+.....++++||-+|+|. |.++..+++..+ .+|+++|.+++.++.+++
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~ 208 (340)
T 3s2e_A 160 KVTDTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLARR 208 (340)
T ss_dssp HTTTCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH
Confidence 344556788999999985 888888887544 699999999999988854
No 440
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=49.77 E-value=15 Score=43.19 Aligned_cols=122 Identities=11% Similarity=-0.008 Sum_probs=65.8
Q ss_pred CCCEEEEEcCCcChHHHHHhcCC-----------CCCceEEEEeC---ChHHHHHHHHHH-------hhhhhcccccCCC
Q 002345 694 CATTLVDFGCGSGSLLDSLLDYP-----------TALEKIVGVDI---SQKSLSRAAKII-------HSKLSKKLDAAVP 752 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~g-----------~~f~~VtGVDI---S~emLe~ArkrL-------~a~ls~~~~~~~P 752 (933)
+.-+|+|+|.|+|.....+.+.. ..--+++.++. +.+.+..|-+.. .+....... ..|
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~-~~~ 136 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPL-PLA 136 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCC-CCS
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcc-cCC
Confidence 34689999999999766554321 01146899998 555555432110 001110000 000
Q ss_pred -------CCCCccEEEEEcCccccCCC-----CCCccEEEEccccccCChh-HHHHHHHHHHHccCCCEEEEEecCC
Q 002345 753 -------CTDVKSAVLFDGSITVFDSR-----LHGFDIGTCLEVIEHMEED-EASQFGNIVLSSFRPRILIVSTPNY 816 (933)
Q Consensus 753 -------r~~~~nVefi~GDaedLp~~-----~~sFDlVVc~eVLEHLpdD-~l~aL~eeI~rlLKPG~LIITTPN~ 816 (933)
..+...++++.||+.+.-.. ...||+++.-..--+-.++ -...|...++++++||..+.+....
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~ 213 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFTAA 213 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESCCC
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEeccCc
Confidence 01223688999999763322 3679999885432221111 0123444699999999666555543
No 441
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=49.49 E-value=31 Score=37.17 Aligned_cols=42 Identities=12% Similarity=0.205 Sum_probs=34.3
Q ss_pred CCCEEEEEc-CC-cChHHHHHhcC-CCCCceEEEEeCChHHHHHHHH
Q 002345 694 CATTLVDFG-CG-SGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 694 ~g~rVLDIG-CG-tG~fL~~LAr~-g~~f~~VtGVDIS~emLe~Ark 737 (933)
++.+||=+| +| .|.++..+++. ++ .+|+++|.+++-++.+++
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g--~~Vi~~~~~~~~~~~~~~ 215 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTD--LTVIATASRPETQEWVKS 215 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCC--SEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcC--CEEEEEeCCHHHHHHHHH
Confidence 577999998 55 58888888885 43 799999999998888854
No 442
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=48.97 E-value=60 Score=34.39 Aligned_cols=98 Identities=14% Similarity=0.077 Sum_probs=63.3
Q ss_pred CCEEEEEcCCcChHHHHHh----cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 695 ATTLVDFGCGSGSLLDSLL----DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LA----r~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
..+|+=+|+| .++..++ +.+ . |+.+|.+++.++ +++ ..+.++.||+.+..
T Consensus 115 ~~~viI~G~G--~~g~~l~~~L~~~g---~-v~vid~~~~~~~-~~~-------------------~~~~~i~gd~~~~~ 168 (336)
T 1lnq_A 115 SRHVVICGWS--ESTLECLRELRGSE---V-FVLAEDENVRKK-VLR-------------------SGANFVHGDPTRVS 168 (336)
T ss_dssp -CEEEEESCC--HHHHHHHTTGGGSC---E-EEEESCGGGHHH-HHH-------------------TTCEEEESCTTSHH
T ss_pred cCCEEEECCc--HHHHHHHHHHHhCC---c-EEEEeCChhhhh-HHh-------------------CCcEEEEeCCCCHH
Confidence 4579998885 4444444 444 5 999999998887 532 14688999987643
Q ss_pred C----CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHH
Q 002345 771 S----RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQ 823 (933)
Q Consensus 771 ~----~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG-~LIITTPN~efNs~f~ 823 (933)
. .....|.|++.. +++....+.-...+.+.|. .++.-.-+.++...+.
T Consensus 169 ~L~~a~i~~a~~vi~~~-----~~d~~n~~~~~~ar~~~~~~~iiar~~~~~~~~~l~ 221 (336)
T 1lnq_A 169 DLEKANVRGARAVIVDL-----ESDSETIHCILGIRKIDESVRIIAEAERYENIEQLR 221 (336)
T ss_dssp HHHHTCSTTEEEEEECC-----SSHHHHHHHHHHHHTTCTTSEEEEECSSGGGHHHHH
T ss_pred HHHhcChhhccEEEEcC-----CccHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHH
Confidence 2 245788888752 3344444444467788888 6666666655544443
No 443
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=48.10 E-value=23 Score=37.88 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=37.5
Q ss_pred HHhhcCCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 688 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 688 d~L~~~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
+.....++.+||-+|+|. |.++..+++..+ ..+|+++|.+++-++.+++
T Consensus 165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~ 214 (356)
T 1pl8_A 165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKE 214 (356)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH
Confidence 344556789999999985 777777877443 2389999999998888864
No 444
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=48.01 E-value=48 Score=35.08 Aligned_cols=79 Identities=18% Similarity=0.162 Sum_probs=57.0
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.+++||=.|++.|. +...|++.| .+|+++|.+++.++.+.+.+... ....++.++.+|+.+..
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G---~~Vv~~~r~~~~~~~~~~~l~~~-----------~~~~~~~~~~~Dl~~~~ 72 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQG---CKVAIADIRQDSIDKALATLEAE-----------GSGPEVMGVQLDVASRE 72 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHH-----------TCGGGEEEEECCTTCHH
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCHH
Confidence 56789999988764 556777887 78999999998887776655421 12237899999998743
Q ss_pred C----------CCCCccEEEEccccc
Q 002345 771 S----------RLHGFDIGTCLEVIE 786 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVLE 786 (933)
. ..+..|+++.+--+.
T Consensus 73 ~v~~~~~~~~~~~g~id~lv~nAg~~ 98 (319)
T 3ioy_A 73 GFKMAADEVEARFGPVSILCNNAGVN 98 (319)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECCCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCcC
Confidence 1 125789999876543
No 445
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=47.96 E-value=40 Score=35.22 Aligned_cols=77 Identities=19% Similarity=0.105 Sum_probs=56.7
Q ss_pred CCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 693 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
..+++||=.|++.|. +...|++.| .+|+.+|.+++.++.+.+.+.. ...++.++.+|+.+.
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~-------------~~~~~~~~~~Dv~d~ 92 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRG---ARLVLSDVDQPALEQAVNGLRG-------------QGFDAHGVVCDVRHL 92 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCCEEEEECCTTCH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHh-------------cCCceEEEEccCCCH
Confidence 467899999998663 567778887 7899999999888777665542 123688999999875
Q ss_pred CC----------CCCCccEEEEcccc
Q 002345 770 DS----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 770 p~----------~~~sFDlVVc~eVL 785 (933)
.. ..+..|+++.+--+
T Consensus 93 ~~v~~~~~~~~~~~g~id~lvnnAg~ 118 (301)
T 3tjr_A 93 DEMVRLADEAFRLLGGVDVVFSNAGI 118 (301)
T ss_dssp HHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 32 12478999987654
No 446
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=47.94 E-value=50 Score=32.89 Aligned_cols=76 Identities=18% Similarity=0.088 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.| .+|+.+|.++..++...+.+.. ...++.++.+|+.+..
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 67 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKG---ATVVGTATSQASAEKFENSMKE-------------KGFKARGLVLNISDIE 67 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHH-------------TTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCceEEEEecCCCHH
Confidence 46788888876653 557777887 7899999999887776655432 1246889999997743
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+..|+++.+-.+
T Consensus 68 ~~~~~~~~~~~~~~~id~li~~Ag~ 92 (247)
T 3lyl_A 68 SIQNFFAEIKAENLAIDILVNNAGI 92 (247)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2 23468999987644
No 447
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=47.69 E-value=26 Score=37.83 Aligned_cols=46 Identities=15% Similarity=0.074 Sum_probs=34.1
Q ss_pred hhcC-CCCEEEEEcCC-cChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 690 IKES-CATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 690 L~~~-~g~rVLDIGCG-tG~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
.... ++.+||-+|+| .|.++..+++..+ .+|+++|.+++.++.+++
T Consensus 182 ~~~~~~g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~ 229 (366)
T 1yqd_A 182 FGLDEPGKHIGIVGLGGLGHVAVKFAKAFG--SKVTVISTSPSKKEEALK 229 (366)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGGHHHHHH
T ss_pred cCcCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 3445 78899999987 3666666766543 689999999988877753
No 448
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=46.69 E-value=44 Score=34.94 Aligned_cols=76 Identities=12% Similarity=0.115 Sum_probs=57.4
Q ss_pred CCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 693 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
.+++++|=-|.+.|. ....|++.| .+|+.+|.+++.++...+.+.. ...++.++++|+.+.
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~G---a~Vv~~~~~~~~~~~~~~~i~~-------------~g~~~~~~~~Dvt~~ 68 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALND---SIVVAVELLEDRLNQIVQELRG-------------MGKEVLGVKADVSKK 68 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCCEEEEECCTTSH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHh-------------cCCcEEEEEccCCCH
Confidence 368889999988775 556788888 7999999999988887776642 123688999999875
Q ss_pred CC----------CCCCccEEEEccc
Q 002345 770 DS----------RLHGFDIGTCLEV 784 (933)
Q Consensus 770 p~----------~~~sFDlVVc~eV 784 (933)
.. ..+..|+++.+--
T Consensus 69 ~~v~~~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 69 KDVEEFVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCc
Confidence 32 2367999998653
No 449
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=46.52 E-value=13 Score=33.13 Aligned_cols=69 Identities=17% Similarity=0.117 Sum_probs=48.4
Q ss_pred CChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcce
Q 002345 392 SFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPIL 471 (933)
Q Consensus 392 ~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~ 471 (933)
.-|+.+|-.+|..+++..|.|.... .. |......|.|+|.|-.+ +
T Consensus 16 ~d~Kt~LqE~~Qk~~~~~P~Y~~~~----------------------------~~--Gp~h~~~F~~~v~i~g~----~- 60 (89)
T 2cpn_A 16 CNPVGALQELVVQKGWRLPEYTVTQ----------------------------ES--GPAHRKEFTMTCRVERF----I- 60 (89)
T ss_dssp CCHHHHHHHHHHHHTCCCCEEEEEE----------------------------EE--CCSSSCEEEEEEEETTE----E-
T ss_pred CCHHHHHHHHHHHcCCCCCeEEEEe----------------------------eE--CCCCCCeEEEEEEECCE----E-
Confidence 3578999999999999999987650 01 21223349999998531 1
Q ss_pred ecCchhhhhhhhhhHhhhhhHHHHHHH
Q 002345 472 ECSPKEFYKKQNESIENASLKVLSWLN 498 (933)
Q Consensus 472 ~~~~~~~~~~~~dai~~a~l~~l~~~~ 498 (933)
....=+..-+|=|+||.++|..|.
T Consensus 61 ---~~G~G~SKK~Aeq~AA~~AL~~L~ 84 (89)
T 2cpn_A 61 ---EIGSGTSKKLAKRNAAAKMLLRVS 84 (89)
T ss_dssp ---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ---EEeeeCCHHHHHHHHHHHHHHHHH
Confidence 122335566899999999999884
No 450
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=46.22 E-value=57 Score=32.92 Aligned_cols=77 Identities=10% Similarity=0.065 Sum_probs=56.1
Q ss_pred CCCEEEEEcC-CcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 694 CATTLVDFGC-GSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 694 ~g~rVLDIGC-GtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
.+++||=.|+ |.|. +...|++.| .+|+.+|.+++.++...+.+.. ....++.++.+|+.+.
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~------------~~~~~~~~~~~Dl~~~ 85 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEG---ADVVISDYHERRLGETRDQLAD------------LGLGRVEAVVCDVTST 85 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHT------------TCSSCEEEEECCTTCH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCC---CEEEEecCCHHHHHHHHHHHHh------------cCCCceEEEEeCCCCH
Confidence 5778999998 5543 567788887 7899999999888777665531 2335799999999875
Q ss_pred CC----------CCCCccEEEEcccc
Q 002345 770 DS----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 770 p~----------~~~sFDlVVc~eVL 785 (933)
.. ..+..|+++.+--+
T Consensus 86 ~~v~~~~~~~~~~~g~id~li~~Ag~ 111 (266)
T 3o38_A 86 EAVDALITQTVEKAGRLDVLVNNAGL 111 (266)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 32 12478999987654
No 451
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=45.69 E-value=33 Score=35.03 Aligned_cols=78 Identities=8% Similarity=0.048 Sum_probs=55.3
Q ss_pred CCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 693 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
..++++|=.|.+.|. +...|++.| .+|+.+|.+++.++.+.+.+.. .+..++.++.+|+.+.
T Consensus 8 l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~------------~~~~~~~~~~~Dv~~~ 72 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATVFARAG---ANVAVAGRSTADIDACVADLDQ------------LGSGKVIGVQTDVSDR 72 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHT------------TSSSCEEEEECCTTSH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh------------hCCCcEEEEEcCCCCH
Confidence 356788888877653 456777887 7999999999888777665541 1224789999999874
Q ss_pred CC----------CCCCccEEEEcccc
Q 002345 770 DS----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 770 p~----------~~~sFDlVVc~eVL 785 (933)
.. ..+..|+++.+--+
T Consensus 73 ~~v~~~~~~~~~~~g~id~lvnnAg~ 98 (262)
T 3pk0_A 73 AQCDALAGRAVEEFGGIDVVCANAGV 98 (262)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 32 12478999986543
No 452
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=45.48 E-value=1.2e+02 Score=34.33 Aligned_cols=107 Identities=19% Similarity=0.184 Sum_probs=58.2
Q ss_pred CCEEEEEcCCc-Ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccccc--CCCCC-CCccEEEEEcCcccc
Q 002345 695 ATTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA--AVPCT-DVKSAVLFDGSITVF 769 (933)
Q Consensus 695 g~rVLDIGCGt-G~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~--~~Pr~-~~~nVefi~GDaedL 769 (933)
..+|.=||+|. |. +...|++.| .+|+++|++++.++.+++.+.......... ..+.. ......+ ..|...
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G---~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~- 111 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVG---ISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKE- 111 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTT---CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGG-
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHH-
Confidence 35799999996 33 556677776 689999999999988876443211000000 00000 0111222 344422
Q ss_pred CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002345 770 DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 812 (933)
Q Consensus 770 p~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIIT 812 (933)
....|+|+..- -+.+ +....+.+.+...++|+.++++
T Consensus 112 ---~~~aDlVIeaV-pe~~--~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 112 ---LSTVDLVVEAV-FEDM--NLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp ---GTTCSEEEECC-CSCH--HHHHHHHHHHHHHSCTTCEEEE
T ss_pred ---HCCCCEEEEcC-CCCH--HHHHHHHHHHHhhCCCCeEEEe
Confidence 34678877653 2221 1223334458888999955554
No 453
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=45.25 E-value=28 Score=40.74 Aligned_cols=121 Identities=12% Similarity=0.009 Sum_probs=65.4
Q ss_pred CCEEEEEcCCcChHHHHHhcCC-----------CCCceEEEEeC---ChHHHHHHHHHHh-------hhhhcccccCCC-
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYP-----------TALEKIVGVDI---SQKSLSRAAKIIH-------SKLSKKLDAAVP- 752 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g-----------~~f~~VtGVDI---S~emLe~ArkrL~-------a~ls~~~~~~~P- 752 (933)
.-+|||+|-|+|.......+.. ...-++++++. +.+.|..+-+... +...........
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 3589999999999765443321 01135899998 8887775533110 000000000000
Q ss_pred -----CCCCccEEEEEcCccccCCC-----CCCccEEEEccccccCChh-HHHHHHHHHHHccCCCEEEEEecC
Q 002345 753 -----CTDVKSAVLFDGSITVFDSR-----LHGFDIGTCLEVIEHMEED-EASQFGNIVLSSFRPRILIVSTPN 815 (933)
Q Consensus 753 -----r~~~~nVefi~GDaedLp~~-----~~sFDlVVc~eVLEHLpdD-~l~aL~eeI~rlLKPG~LIITTPN 815 (933)
..+...++++.||+.+.-.. ...||+++.-..--...++ --..+.+.++++++||..+.+...
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~ 220 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS 220 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCC
T ss_pred eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccC
Confidence 01124577888998763221 3579999885532222211 012344469999999965555443
No 454
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=45.17 E-value=1e+02 Score=31.62 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=50.3
Q ss_pred CCCEEEEEcCC--cCh-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE-EcCcccc
Q 002345 694 CATTLVDFGCG--SGS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF-DGSITVF 769 (933)
Q Consensus 694 ~g~rVLDIGCG--tG~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi-~GDaedL 769 (933)
.+++||=.|+. -|. +...|++.| .+|++++.+....+...+.+... ...+++++ .+|+.+.
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~------------~~~~~~~~~~~D~~d~ 74 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHG---YKVRGTARSASKLANLQKRWDAK------------YPGRFETAVVEDMLKQ 74 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHH------------STTTEEEEECSCTTST
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeCCcccHHHHHHHhhcc------------CCCceEEEEecCCcCh
Confidence 56789998863 233 345566676 78999999887655443332210 11367888 7998764
Q ss_pred CC---CCCCccEEEEccccccC
Q 002345 770 DS---RLHGFDIGTCLEVIEHM 788 (933)
Q Consensus 770 p~---~~~sFDlVVc~eVLEHL 788 (933)
.. ....+|+|+......+.
T Consensus 75 ~~~~~~~~~~d~vih~A~~~~~ 96 (342)
T 1y1p_A 75 GAYDEVIKGAAGVAHIASVVSF 96 (342)
T ss_dssp TTTTTTTTTCSEEEECCCCCSC
T ss_pred HHHHHHHcCCCEEEEeCCCCCC
Confidence 32 23468999987665444
No 455
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=45.10 E-value=1.1e+02 Score=32.22 Aligned_cols=109 Identities=12% Similarity=0.167 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCcChHHHHHhcC------CCCCceEEEEe-----CChHH-------------------HHHHHHHHhhhh
Q 002345 694 CATTLVDFGCGSGSLLDSLLDY------PTALEKIVGVD-----ISQKS-------------------LSRAAKIIHSKL 743 (933)
Q Consensus 694 ~g~rVLDIGCGtG~fL~~LAr~------g~~f~~VtGVD-----IS~em-------------------Le~ArkrL~a~l 743 (933)
-+..|+|+||-.|.-+..++.. .+...+|+|+| +.... .+..++.+...
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~- 147 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH- 147 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH-
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH-
Confidence 4568999999999977765431 11347899999 32110 01111111100
Q ss_pred hcccccCCCCCC-CccEEEEEcCcccc-C-----CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002345 744 SKKLDAAVPCTD-VKSAVLFDGSITVF-D-----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 811 (933)
Q Consensus 744 s~~~~~~~Pr~~-~~nVefi~GDaedL-p-----~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LII 811 (933)
... ..-.. ..+++++.|++.+. + .+...||+|..-.= ........+ +.+...|+||.+|+
T Consensus 148 ~~~----~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D---~Y~~t~~~l-e~~~p~l~~GGvIv 214 (257)
T 3tos_A 148 ECS----DFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD---LYEPTKAVL-EAIRPYLTKGSIVA 214 (257)
T ss_dssp HTT----STTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC---CHHHHHHHH-HHHGGGEEEEEEEE
T ss_pred hhh----hhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc---ccchHHHHH-HHHHHHhCCCcEEE
Confidence 000 00112 36899999999763 2 12346999887652 222333444 45889999995554
No 456
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=44.84 E-value=29 Score=36.14 Aligned_cols=107 Identities=10% Similarity=0.051 Sum_probs=58.8
Q ss_pred CEEEEEcCCc-C-hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC---CCC---CCCccEEEEEcCcc
Q 002345 696 TTLVDFGCGS-G-SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA---VPC---TDVKSAVLFDGSIT 767 (933)
Q Consensus 696 ~rVLDIGCGt-G-~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~---~Pr---~~~~nVefi~GDae 767 (933)
.+|.=||+|. | .+...+++.| .+|+.+|.+++.++.+++.+..........+ .+. ....++.. ..|..
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~ 80 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHG---FAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLA 80 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHH
Confidence 5788899985 2 3456667776 6999999999999888766432211000000 000 00012232 22332
Q ss_pred ccCCCCCCccEEEEccccccCChh--HHHHHHHHHHHccCCCEEEEEec
Q 002345 768 VFDSRLHGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPRILIVSTP 814 (933)
Q Consensus 768 dLp~~~~sFDlVVc~eVLEHLpdD--~l~aL~eeI~rlLKPG~LIITTP 814 (933)
+ .....|+|+. .++++ ....+.+.+...++|+.++++.-
T Consensus 81 ~---~~~~aDlVi~-----av~~~~~~~~~v~~~l~~~~~~~~il~s~t 121 (283)
T 4e12_A 81 Q---AVKDADLVIE-----AVPESLDLKRDIYTKLGELAPAKTIFATNS 121 (283)
T ss_dssp H---HTTTCSEEEE-----CCCSCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred H---HhccCCEEEE-----eccCcHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 2 1245777765 34433 33444456888999996666543
No 457
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=43.94 E-value=80 Score=33.08 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=52.7
Q ss_pred cCCCCEEEEEcCCc-ChHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 692 ESCATTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 692 ~~~g~rVLDIGCGt-G~fL-~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
...+++|+=||+|. |... ..+...| .+|+++|.++..++.+.+ . + +.... ..++
T Consensus 152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G---~~V~~~dr~~~~~~~~~~-~---------------g---~~~~~--~~~l 207 (293)
T 3d4o_A 152 TIHGANVAVLGLGRVGMSVARKFAALG---AKVKVGARESDLLARIAE-M---------------G---MEPFH--ISKA 207 (293)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHH-T---------------T---SEEEE--GGGH
T ss_pred CCCCCEEEEEeeCHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHH-C---------------C---CeecC--hhhH
Confidence 34688999999984 4433 3444555 589999999876544421 1 1 12221 1122
Q ss_pred CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEec
Q 002345 770 DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 814 (933)
Q Consensus 770 p~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTP 814 (933)
.......|+|+..--.+-+. . .....++||.++|.+-
T Consensus 208 ~~~l~~aDvVi~~~p~~~i~-~-------~~l~~mk~~~~lin~a 244 (293)
T 3d4o_A 208 AQELRDVDVCINTIPALVVT-A-------NVLAEMPSHTFVIDLA 244 (293)
T ss_dssp HHHTTTCSEEEECCSSCCBC-H-------HHHHHSCTTCEEEECS
T ss_pred HHHhcCCCEEEECCChHHhC-H-------HHHHhcCCCCEEEEec
Confidence 22235789998865543333 2 2345689996666553
No 458
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=43.66 E-value=49 Score=35.69 Aligned_cols=107 Identities=12% Similarity=0.048 Sum_probs=59.1
Q ss_pred CCEEEEEcCCc--ChHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC------CCccEEEEEcCc
Q 002345 695 ATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT------DVKSAVLFDGSI 766 (933)
Q Consensus 695 g~rVLDIGCGt--G~fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~------~~~nVefi~GDa 766 (933)
..+|-=||+|. +.+...|++.| .+|++.|++++.++.+++.+..........+.-.. ...++.+. .|+
T Consensus 6 ~~kI~vIGaG~MG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~l~~l~~~G~~~g~~~~~~~~~~i~~~-~~~ 81 (319)
T 2dpo_A 6 AGDVLIVGSGLVGRSWAMLFASGG---FRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TNL 81 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CCH
T ss_pred CceEEEEeeCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHHHHHHHHcCccccccchHHHhhceEEe-CCH
Confidence 35788899995 34566777777 68999999999999887654432211000000000 01123432 232
Q ss_pred cccCCCCCCccEEEEccccccCChh--HHHHHHHHHHHccCCCEEEEEe
Q 002345 767 TVFDSRLHGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPRILIVST 813 (933)
Q Consensus 767 edLp~~~~sFDlVVc~eVLEHLpdD--~l~aL~eeI~rlLKPG~LIITT 813 (933)
.+ .....|+|+.. ++++ ....+.+.+...++|+.++++.
T Consensus 82 ~e---av~~aDlViea-----vpe~~~~k~~v~~~l~~~~~~~~Ii~s~ 122 (319)
T 2dpo_A 82 AE---AVEGVVHIQEC-----VPENLDLKRKIFAQLDSIVDDRVVLSSS 122 (319)
T ss_dssp HH---HTTTEEEEEEC-----CCSCHHHHHHHHHHHHTTCCSSSEEEEC
T ss_pred HH---HHhcCCEEEEe-----ccCCHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 22 12457776654 3432 2233445588899999555543
No 459
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=43.66 E-value=29 Score=37.63 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=37.2
Q ss_pred HhhcCCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 689 HIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 689 ~L~~~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
.....++.+||-+|+|. |.++..+++..+ ..+|+++|.+++.++.+++
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~~ 228 (398)
T 1kol_A 180 TAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA 228 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH
T ss_pred HcCCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHH
Confidence 34556788999999975 778888887543 2479999999999988854
No 460
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=43.48 E-value=18 Score=38.84 Aligned_cols=45 Identities=13% Similarity=0.011 Sum_probs=33.8
Q ss_pred hhcC-CCCEEEEEcCC-cChHHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 002345 690 IKES-CATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAA 736 (933)
Q Consensus 690 L~~~-~g~rVLDIGCG-tG~fL~~LAr~g~~f~~VtGVDIS~emLe~Ar 736 (933)
.... ++.+||-+|+| .|.++..+++..+ .+|+++|.+++.++.++
T Consensus 175 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~~~~~~~~~~~ 221 (357)
T 2cf5_A 175 FGLKQPGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSNKKREEAL 221 (357)
T ss_dssp TSTTSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSTTHHHHHH
T ss_pred cCCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHH
Confidence 3444 78899999987 4666667776543 68999999998887775
No 461
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=42.73 E-value=71 Score=32.54 Aligned_cols=77 Identities=14% Similarity=0.069 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 693 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
..+++||=.|++.|. +...|++.| .+|+++|.++..++...+.+.. ...++.++.+|+.+.
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~G---~~V~~~~r~~~~~~~~~~~l~~-------------~~~~~~~~~~Dl~~~ 92 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLK---SKLVLWDINKHGLEETAAKCKG-------------LGAKVHTFVVDCSNR 92 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCCEEEEECCTTCH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEEcCHHHHHHHHHHHHh-------------cCCeEEEEEeeCCCH
Confidence 356789999976542 445667777 7899999998877665554431 123688999998764
Q ss_pred CC----------CCCCccEEEEcccc
Q 002345 770 DS----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 770 p~----------~~~sFDlVVc~eVL 785 (933)
.. ..+.+|+|+.+--+
T Consensus 93 ~~v~~~~~~~~~~~g~iD~li~~Ag~ 118 (272)
T 1yb1_A 93 EDIYSSAKKVKAEIGDVSILVNNAGV 118 (272)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHCCCCcEEEECCCc
Confidence 31 12478999987654
No 462
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=42.57 E-value=26 Score=43.90 Aligned_cols=42 Identities=10% Similarity=0.141 Sum_probs=35.0
Q ss_pred CCEEEEEcCCcChHHHHHhcCCCCC-ceEEEEeCChHHHHHHHHH
Q 002345 695 ATTLVDFGCGSGSLLDSLLDYPTAL-EKIVGVDISQKSLSRAAKI 738 (933)
Q Consensus 695 g~rVLDIGCGtG~fL~~LAr~g~~f-~~VtGVDIS~emLe~Arkr 738 (933)
..+++|+=||.|.+...|.+.| + ..+.++|+++.+.+.-+.+
T Consensus 540 ~l~~iDLFaG~GGlslGl~~AG--~~~vv~avEid~~A~~ty~~N 582 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQAG--ISDTLWAIEMWDPAAQAFRLN 582 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHHT--SEEEEEEECSSHHHHHHHHHH
T ss_pred CCeEEEeccCccHHHHHHHHCC--CCceEEEEECCHHHHHHHHHh
Confidence 4589999999999999998876 3 4688999999988877554
No 463
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=42.51 E-value=60 Score=32.86 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=52.9
Q ss_pred CCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 693 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
..++++|=.|++.|. +...|++.| .+|+.+|.+++.++...+.+. .++.++.+|+.+.
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~D~~~~ 66 (259)
T 4e6p_A 6 LEGKSALITGSARGIGRAFAEAYVREG---ATVAIADIDIERARQAAAEIG----------------PAAYAVQMDVTRQ 66 (259)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHC----------------TTEEEEECCTTCH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhC----------------CCceEEEeeCCCH
Confidence 356789999987653 556778887 789999999887766644331 2578889999774
Q ss_pred CC----------CCCCccEEEEcccc
Q 002345 770 DS----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 770 p~----------~~~sFDlVVc~eVL 785 (933)
.. ..+..|+++.+-.+
T Consensus 67 ~~v~~~~~~~~~~~g~id~lv~~Ag~ 92 (259)
T 4e6p_A 67 DSIDAAIAATVEHAGGLDILVNNAAL 92 (259)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 32 13479999987654
No 464
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=42.37 E-value=56 Score=33.17 Aligned_cols=74 Identities=9% Similarity=0.107 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 693 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
..++++|=.|++.|. +...|++.| .+|+.+|.+++.++...+.+. .++.++.+|+.+.
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~Dv~~~ 66 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGG---AEVLLTGRNESNIARIREEFG----------------PRVHALRSDIADL 66 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHG----------------GGEEEEECCTTCH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhC----------------CcceEEEccCCCH
Confidence 357889999987664 556778887 799999999987776654432 3688899999875
Q ss_pred CC----------CCCCccEEEEcccc
Q 002345 770 DS----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 770 p~----------~~~sFDlVVc~eVL 785 (933)
.. ..+..|+++.+--+
T Consensus 67 ~~v~~~~~~~~~~~g~id~lv~nAg~ 92 (255)
T 4eso_A 67 NEIAVLGAAAGQTLGAIDLLHINAGV 92 (255)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 32 12478999986543
No 465
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=42.32 E-value=59 Score=33.24 Aligned_cols=76 Identities=12% Similarity=0.044 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.| .+|+.+|.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 83 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGLG---ARVYTCSRNEKELDECLEIWRE-------------KGLNVEGSVCDLLSRT 83 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCceEEEECCCCCHH
Confidence 56789999986553 456777787 7899999998877665544431 1236888999987643
Q ss_pred C----------CC-CCccEEEEcccc
Q 002345 771 S----------RL-HGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~-~sFDlVVc~eVL 785 (933)
. .. +..|+++.+--+
T Consensus 84 ~~~~~~~~~~~~~~g~id~lv~nAg~ 109 (273)
T 1ae1_A 84 ERDKLMQTVAHVFDGKLNILVNNAGV 109 (273)
T ss_dssp HHHHHHHHHHHHTTSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCcEEEECCCC
Confidence 2 11 678999987644
No 466
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=41.98 E-value=60 Score=32.78 Aligned_cols=76 Identities=13% Similarity=0.035 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.+++||=.|++.|. +...|++.| .+|+.+|.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 71 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLG---ASVYTCSRNQKELNDCLTQWRS-------------KGFKVEASVCDLSSRS 71 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCEEEEEECCTTCHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCcEEEEEcCCCCHH
Confidence 46789989986553 456777787 7899999998877665544431 1236888999998743
Q ss_pred C----------CC-CCccEEEEcccc
Q 002345 771 S----------RL-HGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~-~sFDlVVc~eVL 785 (933)
. .. +..|+++.+--+
T Consensus 72 ~~~~~~~~~~~~~~g~id~lv~~Ag~ 97 (260)
T 2ae2_A 72 ERQELMNTVANHFHGKLNILVNNAGI 97 (260)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCCEEEECCCC
Confidence 1 11 579999987654
No 467
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=41.91 E-value=59 Score=33.10 Aligned_cols=78 Identities=13% Similarity=0.025 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF- 769 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL- 769 (933)
.+++||=.|++.|. +...|++.| .+|++++.++..++.+.+.+.. ....++.++.+|+.+.
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G---~~V~~~~r~~~~~~~~~~~l~~------------~~~~~~~~~~~Dl~~~~ 75 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNG---IMVVLTCRDVTKGHEAVEKLKN------------SNHENVVFHQLDVTDPI 75 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHT------------TTCCSEEEEECCTTSCH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh------------cCCCceEEEEccCCCcH
Confidence 46789988987653 556777887 7999999999887777665542 2334789999999875
Q ss_pred CC----------CCCCccEEEEccccc
Q 002345 770 DS----------RLHGFDIGTCLEVIE 786 (933)
Q Consensus 770 p~----------~~~sFDlVVc~eVLE 786 (933)
.. ..+..|+++.+--+-
T Consensus 76 ~~v~~~~~~~~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 76 ATMSSLADFIKTHFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCccc
Confidence 21 124799999876543
No 468
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=41.38 E-value=28 Score=38.22 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCCc-ChHHHH-HhcCCCCCceEEEEeCChHHHHHHHHH
Q 002345 693 SCATTLVDFGCGS-GSLLDS-LLDYPTALEKIVGVDISQKSLSRAAKI 738 (933)
Q Consensus 693 ~~g~rVLDIGCGt-G~fL~~-LAr~g~~f~~VtGVDIS~emLe~Arkr 738 (933)
..+++|+=+|+|. |..... +...| .+|+++|.+++.++.+++.
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~G---a~V~~~d~~~~~l~~~~~~ 210 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGMG---ATVTVLDINIDKLRQLDAE 210 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHh
Confidence 3678999999973 443333 33455 5899999999888777553
No 469
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=41.10 E-value=1.5e+02 Score=30.25 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=51.6
Q ss_pred EEEEEcCCc-Ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCC
Q 002345 697 TLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 774 (933)
Q Consensus 697 rVLDIGCGt-G~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~~~ 774 (933)
+|.=||+|. |. +...|++.|. ..+|+++|.+++.++.+++. +... . ...|..+ ...
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~-~~~V~~~d~~~~~~~~~~~~----------------g~~~-~-~~~~~~~---~~~ 60 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINPESISKAVDL----------------GIID-E-GTTSIAK---VED 60 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCHHHHHHHHHT----------------TSCS-E-EESCGGG---GGG
T ss_pred EEEEEecCHHHHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHC----------------CCcc-c-ccCCHHH---Hhc
Confidence 688899985 33 4556666651 12899999999887766421 1100 1 1122222 123
Q ss_pred -CccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe
Q 002345 775 -GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 813 (933)
Q Consensus 775 -sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITT 813 (933)
..|+|+.. +++.....+.+.+...++|+.+++.+
T Consensus 61 ~~aDvVila-----vp~~~~~~v~~~l~~~l~~~~iv~~~ 95 (281)
T 2g5c_A 61 FSPDFVMLS-----SPVRTFREIAKKLSYILSEDATVTDQ 95 (281)
T ss_dssp TCCSEEEEC-----SCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred CCCCEEEEc-----CCHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 57887764 55444444444577788998555543
No 470
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=40.99 E-value=74 Score=33.49 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=55.1
Q ss_pred CEEEEEcCCc-Ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC-CccEEEEEcCccccCCC
Q 002345 696 TTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD-VKSAVLFDGSITVFDSR 772 (933)
Q Consensus 696 ~rVLDIGCGt-G~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~-~~nVefi~GDaedLp~~ 772 (933)
.+|.=||+|. |. +...|++.+ .+|+++|.+++.++..++...-... . .... ..++.....|..+ .
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~---~ 72 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKG---QSVLAWDIDAQRIKEIQDRGAIIAE-----G-PGLAGTAHPDLLTSDIGL---A 72 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHHTSEEEE-----S-SSCCEEECCSEEESCHHH---H
T ss_pred CeEEEECCCHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHhcCCeEEe-----c-cccccccccceecCCHHH---H
Confidence 5799999985 43 445677776 6899999999877766443100000 0 0000 0000001122211 1
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 815 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN 815 (933)
...+|+|+..--- .....+.+.+...++++.++|..++
T Consensus 73 ~~~~D~vi~~v~~-----~~~~~~~~~l~~~l~~~~~vv~~~~ 110 (359)
T 1bg6_A 73 VKDADVILIVVPA-----IHHASIAANIASYISEGQLIILNPG 110 (359)
T ss_dssp HTTCSEEEECSCG-----GGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred HhcCCEEEEeCCc-----hHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 2368888775322 2222333457788999966666666
No 471
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=40.64 E-value=3.4e+02 Score=29.35 Aligned_cols=162 Identities=10% Similarity=-0.014 Sum_probs=84.0
Q ss_pred CCCEEEEEcCCcCh--HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC------CCccEEEEEcC
Q 002345 694 CATTLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT------DVKSAVLFDGS 765 (933)
Q Consensus 694 ~g~rVLDIGCGtG~--fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~------~~~nVefi~GD 765 (933)
...+|.=||+|+-. +...++..| .+|+-+|++++.++.+.+++.+.+......+.-.. ...++.+. .|
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G---~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~ 80 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGG---FRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TN 80 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CC
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cc
Confidence 34689999999532 455667777 78999999999999888776644322111000000 01123332 23
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecC-CchhHHHHhhccCcCCCCCcchhhhcccc
Q 002345 766 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN-YEYNAILQKSSSTIQEDDPDEKTQLQSCK 844 (933)
Q Consensus 766 aedLp~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN-~efNs~f~~l~~~g~~eYpdEp~g~~~~~ 844 (933)
+.+ .....|+|+=. |.|-+. -. ..+.+++-++++|+.++-|.-. ..-..+.... ..|+.-+ ...
T Consensus 81 l~~---a~~~ad~ViEa-v~E~l~-iK-~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~------~~p~r~i---g~H 145 (319)
T 3ado_A 81 LAE---AVEGVVHIQEC-VPENLD-LK-RKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGL------AHVKQCI---VAH 145 (319)
T ss_dssp HHH---HTTTEEEEEEC-CCSCHH-HH-HHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTC------TTGGGEE---EEE
T ss_pred hHh---HhccCcEEeec-cccHHH-HH-HHHHHHHHHHhhhcceeehhhhhccchhhhhhc------cCCCcEE---Eec
Confidence 222 12345654421 334443 22 3344458889999854444332 2212222211 1111111 122
Q ss_pred ccCCCcc--------cccCHHHHHHHHHHHHHHcCcEE
Q 002345 845 FRNHDHK--------FEWTRDQFNCWATELAARHNYSV 874 (933)
Q Consensus 845 fRh~DHk--------FeWTreEF~~Was~LA~r~GYsV 874 (933)
|-++-|. -.+|..+....+..++.+.|...
T Consensus 146 ffNP~~~m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~p 183 (319)
T 3ado_A 146 PVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSP 183 (319)
T ss_dssp ECSSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCccccchHHhcCCCCCcHHHHHHHHHHHHHhCCcc
Confidence 2333332 34788888888889999888554
No 472
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=40.48 E-value=62 Score=32.25 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=52.4
Q ss_pred CCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 693 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
.++++||=.|++.|. +...|++.| .+|+.+|.+++.++...+.+. .++.+..+|+.+.
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~D~~~~ 72 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLG---SKVIISGSNEEKLKSLGNALK----------------DNYTIEVCNLANK 72 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHC----------------SSEEEEECCTTSH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHhc----------------cCccEEEcCCCCH
Confidence 467889999987653 556777887 789999999887776654432 2578888888764
Q ss_pred CC------CCCCccEEEEcccc
Q 002345 770 DS------RLHGFDIGTCLEVI 785 (933)
Q Consensus 770 p~------~~~sFDlVVc~eVL 785 (933)
.. ..+..|+++.+-.+
T Consensus 73 ~~~~~~~~~~~~id~li~~Ag~ 94 (249)
T 3f9i_A 73 EECSNLISKTSNLDILVCNAGI 94 (249)
T ss_dssp HHHHHHHHTCSCCSEEEECCC-
T ss_pred HHHHHHHHhcCCCCEEEECCCC
Confidence 31 23478999987654
No 473
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=40.19 E-value=59 Score=32.04 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=47.9
Q ss_pred CCCEEEEEcCC--cCh-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE-EEEEcCcc-c
Q 002345 694 CATTLVDFGCG--SGS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA-VLFDGSIT-V 768 (933)
Q Consensus 694 ~g~rVLDIGCG--tG~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nV-efi~GDae-d 768 (933)
.+++||=.|+. .|. +...|++.| .+|++++.++..++.... .++ .++.+|+. .
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G---~~V~~~~R~~~~~~~~~~-------------------~~~~~~~~~Dl~~~ 77 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKG---HEPVAMVRNEEQGPELRE-------------------RGASDIVVANLEED 77 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHH-------------------TTCSEEEECCTTSC
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCC---CeEEEEECChHHHHHHHh-------------------CCCceEEEcccHHH
Confidence 57899999974 333 445666776 799999998876544321 156 88889986 2
Q ss_pred cCCCCCCccEEEEcccccc
Q 002345 769 FDSRLHGFDIGTCLEVIEH 787 (933)
Q Consensus 769 Lp~~~~sFDlVVc~eVLEH 787 (933)
+......+|+|+......+
T Consensus 78 ~~~~~~~~D~vi~~ag~~~ 96 (236)
T 3e8x_A 78 FSHAFASIDAVVFAAGSGP 96 (236)
T ss_dssp CGGGGTTCSEEEECCCCCT
T ss_pred HHHHHcCCCEEEECCCCCC
Confidence 2223457999998765543
No 474
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=39.94 E-value=83 Score=32.24 Aligned_cols=76 Identities=12% Similarity=-0.030 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.+++||=.|++.|. +...|++.| .+|+.+|.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 21 ~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~-------------~~~~~~~~~~Dv~~~~ 84 (277)
T 2rhc_B 21 DSEVALVTGATSGIGLEIARRLGKEG---LRVFVCARGEEGLRTTLKELRE-------------AGVEADGRTCDVRSVP 84 (277)
T ss_dssp TSCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCceEEEECCCCCHH
Confidence 56789999987653 456677777 7899999998877665544431 1235788899987643
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+.+|+++.+--+
T Consensus 85 ~v~~~~~~~~~~~g~iD~lv~~Ag~ 109 (277)
T 2rhc_B 85 EIEALVAAVVERYGPVDVLVNNAGR 109 (277)
T ss_dssp HHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 1 12478999987644
No 475
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=39.92 E-value=57 Score=34.28 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=53.1
Q ss_pred CCCCEEEEEcCCc-ChH-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 693 SCATTLVDFGCGS-GSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 693 ~~g~rVLDIGCGt-G~f-L~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
..+++|+=||+|. |.. ...+...| .+|+++|.+++.++.+.+ . .+.... ..+++
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~G---~~V~~~d~~~~~~~~~~~-~------------------g~~~~~--~~~l~ 210 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAALG---ANVKVGARSSAHLARITE-M------------------GLVPFH--TDELK 210 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHH-T------------------TCEEEE--GGGHH
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHH-C------------------CCeEEc--hhhHH
Confidence 4678999999984 333 34444555 689999999865544321 0 112221 11222
Q ss_pred CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEec
Q 002345 771 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 814 (933)
Q Consensus 771 ~~~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTP 814 (933)
......|+|+..--.+-+. . .....++||.++|.+-
T Consensus 211 ~~l~~aDvVi~~~p~~~i~-~-------~~~~~mk~g~~lin~a 246 (300)
T 2rir_A 211 EHVKDIDICINTIPSMILN-Q-------TVLSSMTPKTLILDLA 246 (300)
T ss_dssp HHSTTCSEEEECCSSCCBC-H-------HHHTTSCTTCEEEECS
T ss_pred HHhhCCCEEEECCChhhhC-H-------HHHHhCCCCCEEEEEe
Confidence 2235789999876654343 2 2456789996666554
No 476
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=39.56 E-value=82 Score=32.46 Aligned_cols=78 Identities=10% Similarity=0.057 Sum_probs=53.8
Q ss_pred cCCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeC-ChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002345 692 ESCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDI-SQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 767 (933)
Q Consensus 692 ~~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDI-S~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDae 767 (933)
...++++|=.|++.|. +...|++.| .+|+.+|. +++.++...+.+.. ...++.++.+|+.
T Consensus 26 ~~~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~Dv~ 89 (280)
T 4da9_A 26 QKARPVAIVTGGRRGIGLGIARALAASG---FDIAITGIGDAEGVAPVIAELSG-------------LGARVIFLRADLA 89 (280)
T ss_dssp CCCCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCCHHHHHHHHHHHHH-------------TTCCEEEEECCTT
T ss_pred ccCCCEEEEecCCCHHHHHHHHHHHHCC---CeEEEEeCCCHHHHHHHHHHHHh-------------cCCcEEEEEecCC
Confidence 3467889999987663 567788887 78999996 66666655444431 1246899999998
Q ss_pred ccCC----------CCCCccEEEEcccc
Q 002345 768 VFDS----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 768 dLp~----------~~~sFDlVVc~eVL 785 (933)
+... ..+..|+++.+--+
T Consensus 90 d~~~v~~~~~~~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 90 DLSSHQATVDAVVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp SGGGHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 7543 12478999987654
No 477
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=39.50 E-value=31 Score=37.34 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=36.3
Q ss_pred hhcCCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 690 IKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 690 L~~~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
....++.+||-+|+|. |.++..+++..+ .+|+++|.+++.++.+++
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~Vi~~~~~~~~~~~a~~ 236 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKA 236 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 3455789999999984 777777777543 579999999999888865
No 478
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=39.03 E-value=80 Score=32.57 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=54.3
Q ss_pred CCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeC-ChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc
Q 002345 693 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDI-SQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 768 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDI-S~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaed 768 (933)
..++++|=.|++.|. +...|++.| .+|+.+|. +++.++...+.+.. ....++.++.+|+.+
T Consensus 23 l~~k~~lVTGas~GIG~~ia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~------------~~~~~~~~~~~Dv~d 87 (281)
T 3v2h_A 23 MMTKTAVITGSTSGIGLAIARTLAKAG---ANIVLNGFGAPDEIRTVTDEVAG------------LSSGTVLHHPADMTK 87 (281)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEECCCCHHHHHHHHHHHHT------------TCSSCEEEECCCTTC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCChHHHHHHHHHHhh------------ccCCcEEEEeCCCCC
Confidence 356789999987663 556778887 79999998 66666655544431 123478899999987
Q ss_pred cCC----------CCCCccEEEEccccc
Q 002345 769 FDS----------RLHGFDIGTCLEVIE 786 (933)
Q Consensus 769 Lp~----------~~~sFDlVVc~eVLE 786 (933)
... ..+..|+++.+--+.
T Consensus 88 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~ 115 (281)
T 3v2h_A 88 PSEIADMMAMVADRFGGADILVNNAGVQ 115 (281)
T ss_dssp HHHHHHHHHHHHHHTSSCSEEEECCCCC
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCC
Confidence 432 135789999876543
No 479
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=38.98 E-value=40 Score=35.96 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=36.6
Q ss_pred HHhhcCCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 688 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 688 d~L~~~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
+.....++.+||-+|+|. |.++..+++..+ .+|+++|.+++.++.+++
T Consensus 162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~ 210 (352)
T 1e3j_A 162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKN 210 (352)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH
Confidence 344556789999999874 777777776443 569999999998888854
No 480
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=38.75 E-value=1.1e+02 Score=30.94 Aligned_cols=91 Identities=14% Similarity=0.136 Sum_probs=54.3
Q ss_pred CEEEEEcCCc-Ch-HHHHHhcCCCCCce-EEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002345 696 TTLVDFGCGS-GS-LLDSLLDYPTALEK-IVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772 (933)
Q Consensus 696 ~rVLDIGCGt-G~-fL~~LAr~g~~f~~-VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~~ 772 (933)
.+|.=||||. |. +...|++.+ .+ |+.+|.+++.++.+.+.+ .+.. ..|..+.
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~g---~~~v~~~~~~~~~~~~~~~~~------------------g~~~-~~~~~~~--- 65 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRKG---FRIVQVYSRTEESARELAQKV------------------EAEY-TTDLAEV--- 65 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHT---CCEEEEECSSHHHHHHHHHHT------------------TCEE-ESCGGGS---
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC---CeEEEEEeCCHHHHHHHHHHc------------------CCce-eCCHHHH---
Confidence 5789999984 33 445566655 45 899999998777664431 1121 2233222
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCC
Q 002345 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 816 (933)
Q Consensus 773 ~~sFDlVVc~eVLEHLpdD~l~aL~eeI~rlLKPG~LIITTPN~ 816 (933)
....|+|+.. ++++....+.+.+...+++|.+++++-+.
T Consensus 66 ~~~~Dvvi~a-----v~~~~~~~v~~~l~~~~~~~~ivv~~s~~ 104 (266)
T 3d1l_A 66 NPYAKLYIVS-----LKDSAFAELLQGIVEGKREEALMVHTAGS 104 (266)
T ss_dssp CSCCSEEEEC-----CCHHHHHHHHHHHHTTCCTTCEEEECCTT
T ss_pred hcCCCEEEEe-----cCHHHHHHHHHHHHhhcCCCcEEEECCCC
Confidence 2357887764 44333334444577778889666666543
No 481
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=38.68 E-value=75 Score=31.95 Aligned_cols=76 Identities=13% Similarity=0.044 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.| .+|+.+|.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~-------------~~~~~~~~~~Dv~~~~ 69 (247)
T 2jah_A 6 QGKVALITGASSGIGEATARALAAEG---AAVAIAARRVEKLRALGDELTA-------------AGAKVHVLELDVADRQ 69 (247)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHh-------------cCCcEEEEECCCCCHH
Confidence 46789999987653 456777887 7899999998877766554431 1236888999987743
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+..|+++.+--+
T Consensus 70 ~~~~~~~~~~~~~g~id~lv~nAg~ 94 (247)
T 2jah_A 70 GVDAAVASTVEALGGLDILVNNAGI 94 (247)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2 12478999986543
No 482
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=38.58 E-value=41 Score=35.87 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=38.6
Q ss_pred HHhhcCCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 688 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 688 d~L~~~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
+.....++.+||-+|+|. |.++..+++..+ ..+|+++|.+++.++.+++
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~ 209 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIALE 209 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH
Confidence 455566789999999985 777888887653 2489999999998888865
No 483
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=38.55 E-value=77 Score=32.48 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=53.5
Q ss_pred CCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCC----------------hHHHHHHHHHHhhhhhcccccCCCC
Q 002345 693 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDIS----------------QKSLSRAAKIIHSKLSKKLDAAVPC 753 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS----------------~emLe~ArkrL~a~ls~~~~~~~Pr 753 (933)
..++++|=.|++.|. +...|++.| .+|+.+|.+ ++.++...+.+..
T Consensus 9 l~~k~~lVTGas~gIG~aia~~la~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 73 (286)
T 3uve_A 9 VEGKVAFVTGAARGQGRSHAVRLAQEG---ADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKG------------ 73 (286)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHT------------
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeccccccccccccccccCCHHHHHHHHHHHhh------------
Confidence 357899999998764 567788888 789999987 5555555444321
Q ss_pred CCCccEEEEEcCccccCC----------CCCCccEEEEcccc
Q 002345 754 TDVKSAVLFDGSITVFDS----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 754 ~~~~nVefi~GDaedLp~----------~~~sFDlVVc~eVL 785 (933)
...++.++.+|+.+... ..+..|+++.+--+
T Consensus 74 -~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 114 (286)
T 3uve_A 74 -HNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGI 114 (286)
T ss_dssp -TTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred -cCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 23478899999987432 12478999986643
No 484
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=37.71 E-value=77 Score=32.94 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=53.6
Q ss_pred CCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCC------------hHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 693 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDIS------------QKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS------------~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
..++++|=.|++.|. +...|++.| .+|+.+|.+ ++.++...+.+.. ...
T Consensus 26 l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 89 (299)
T 3t7c_A 26 VEGKVAFITGAARGQGRSHAITLAREG---ADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEA-------------LGR 89 (299)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHH-------------TTC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEecccccccccccccCHHHHHHHHHHHHh-------------cCC
Confidence 467899999988764 557788888 799999987 5556555444431 124
Q ss_pred cEEEEEcCccccCC----------CCCCccEEEEcccc
Q 002345 758 SAVLFDGSITVFDS----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 758 nVefi~GDaedLp~----------~~~sFDlVVc~eVL 785 (933)
++.++.+|+.+... ..+..|+++.+-.+
T Consensus 90 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 127 (299)
T 3t7c_A 90 RIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAAL 127 (299)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 68899999987532 12478999976543
No 485
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=37.66 E-value=42 Score=34.31 Aligned_cols=78 Identities=12% Similarity=0.035 Sum_probs=55.5
Q ss_pred CCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 693 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
..+++||=.|++.|. +...|++.| .+|+.+|.+++.++.+.+.+... ...++.++.+|+.+.
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~------------~~~~~~~~~~Dv~~~ 82 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAG---ARLVLSGRDVSELDAARRALGEQ------------FGTDVHTVAIDLAEP 82 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHH------------HCCCEEEEECCTTST
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHh------------cCCcEEEEEecCCCH
Confidence 357789988887653 556778887 78999999998887776655321 123688999999875
Q ss_pred CC----------CCCCccEEEEcccc
Q 002345 770 DS----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 770 p~----------~~~sFDlVVc~eVL 785 (933)
.. ..+..|+++.+--+
T Consensus 83 ~~v~~~~~~~~~~~g~id~lv~nAg~ 108 (266)
T 4egf_A 83 DAPAELARRAAEAFGGLDVLVNNAGI 108 (266)
T ss_dssp THHHHHHHHHHHHHTSCSEEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 42 12478999986543
No 486
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=37.65 E-value=1.1e+02 Score=30.12 Aligned_cols=75 Identities=12% Similarity=0.196 Sum_probs=49.5
Q ss_pred CCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002345 695 ATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771 (933)
Q Consensus 695 g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp~ 771 (933)
+++||=.|++.|. +...|++.| .+|+.+|.++..++...+.+.. ....++.++.+|+.+...
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~------------~~~~~~~~~~~D~~~~~~ 66 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARG---DRVAALDLSAETLEETARTHWH------------AYADKVLRVRADVADEGD 66 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHST------------TTGGGEEEEECCTTCHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHH------------hcCCcEEEEEecCCCHHH
Confidence 3578888876442 445677777 6899999998777655443310 112468899999987432
Q ss_pred ----------CCCCccEEEEccc
Q 002345 772 ----------RLHGFDIGTCLEV 784 (933)
Q Consensus 772 ----------~~~sFDlVVc~eV 784 (933)
..+.+|+|+.+-.
T Consensus 67 ~~~~~~~~~~~~~~id~li~~Ag 89 (250)
T 2cfc_A 67 VNAAIAATMEQFGAIDVLVNNAG 89 (250)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCC
Confidence 1136899998654
No 487
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=37.55 E-value=43 Score=36.01 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=37.5
Q ss_pred HHhhcCCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 688 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 688 d~L~~~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
+.....++.+||-+|+|. |.++..+++..+ .+|+++|.+++-++.+++
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~ 231 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRAFA 231 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHHHH
Confidence 444556789999999884 777777777543 699999999998888865
No 488
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=37.08 E-value=68 Score=32.63 Aligned_cols=78 Identities=13% Similarity=0.025 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.| .+|+.+|.+++.++...+.+... .....+.++.+|+.+..
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~-----------~~~~~~~~~~~D~~~~~ 74 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVAEG---ANVLINGRREENVNETIKEIRAQ-----------YPDAILQPVVADLGTEQ 74 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHH-----------CTTCEEEEEECCTTSHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhh-----------CCCceEEEEecCCCCHH
Confidence 56788988887653 456777887 78999999998877766555421 12236788888987643
Q ss_pred C------CCCCccEEEEcccc
Q 002345 771 S------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~------~~~sFDlVVc~eVL 785 (933)
. ..+..|+++.+--+
T Consensus 75 ~~~~~~~~~g~id~lv~nAg~ 95 (267)
T 3t4x_A 75 GCQDVIEKYPKVDILINNLGI 95 (267)
T ss_dssp HHHHHHHHCCCCSEEEECCCC
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 1 23578999986544
No 489
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}
Probab=36.58 E-value=78 Score=32.93 Aligned_cols=81 Identities=15% Similarity=0.057 Sum_probs=54.7
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.|....+|+.+|.+++.++...+.+... ....++.++.+|+.+..
T Consensus 32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~-----------~~~~~~~~~~~Dv~d~~ 100 (287)
T 3rku_A 32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQE-----------FPNAKVHVAQLDITQAE 100 (287)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH-----------CTTCEEEEEECCTTCGG
T ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhh-----------CCCCeEEEEECCCCCHH
Confidence 57889999987653 34556665511138999999998887776655421 11246889999998754
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+..|+++.+--+
T Consensus 101 ~v~~~~~~~~~~~g~iD~lVnnAG~ 125 (287)
T 3rku_A 101 KIKPFIENLPQEFKDIDILVNNAGK 125 (287)
T ss_dssp GHHHHHHTSCGGGCSCCEEEECCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCc
Confidence 2 12479999987654
No 490
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=36.04 E-value=62 Score=33.86 Aligned_cols=77 Identities=16% Similarity=0.004 Sum_probs=57.2
Q ss_pred CCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 693 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
.+++++|=-|.+.|. ....|++.| .+|+..|.+++.++.+.+.+.+ ...++..+++|+.+.
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~G---a~Vvi~~~~~~~~~~~~~~l~~-------------~g~~~~~~~~Dv~~~ 70 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAG---ARVILNDIRATLLAESVDTLTR-------------KGYDAHGVAFDVTDE 70 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEECCSCHHHHHHHHHHHHH-------------TTCCEEECCCCTTCH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHh-------------cCCcEEEEEeeCCCH
Confidence 467888888887764 557888888 7999999999988877666542 123678888998774
Q ss_pred CC----------CCCCccEEEEcccc
Q 002345 770 DS----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 770 p~----------~~~sFDlVVc~eVL 785 (933)
.. ..+..|+++.+--+
T Consensus 71 ~~v~~~~~~~~~~~G~iDiLVNNAG~ 96 (255)
T 4g81_D 71 LAIEAAFSKLDAEGIHVDILINNAGI 96 (255)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHCCCCcEEEECCCC
Confidence 32 34689999986644
No 491
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=36.03 E-value=34 Score=36.82 Aligned_cols=49 Identities=20% Similarity=0.242 Sum_probs=36.4
Q ss_pred HHhhcCCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 688 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 688 d~L~~~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
+.....++++||-+|+|. |.++..+++..+ ..+|+++|.+++.++.+++
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~ 235 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV 235 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH
Confidence 334455788999999874 777777776543 2389999999998888864
No 492
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=35.80 E-value=56 Score=32.38 Aligned_cols=76 Identities=17% Similarity=0.068 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.+++||=.|++.|. +...|++.| .+|+++|.++..++...+.+.. ...++.++.+|+.+..
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 73 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAG---ASVVVSDINADAANHVVDEIQQ-------------LGGQAFACRCDITSEQ 73 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHH-------------hCCceEEEEcCCCCHH
Confidence 56788888865432 445666776 7899999998776655444431 1236788899987643
Q ss_pred C----------CCCCccEEEEcccc
Q 002345 771 S----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~----------~~~sFDlVVc~eVL 785 (933)
. ..+.+|+|+.+-.+
T Consensus 74 ~~~~~~~~~~~~~~~~d~vi~~Ag~ 98 (255)
T 1fmc_A 74 ELSALADFAISKLGKVDILVNNAGG 98 (255)
T ss_dssp HHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 2 11378999986544
No 493
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=35.65 E-value=88 Score=31.82 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=55.0
Q ss_pred CCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCC------------hHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002345 693 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDIS------------QKSLSRAAKIIHSKLSKKLDAAVPCTDVK 757 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS------------~emLe~ArkrL~a~ls~~~~~~~Pr~~~~ 757 (933)
..+++||=.|++.|. +...|++.| .+|+.+|.+ ++.++...+.+.. ...
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 74 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVRLAADG---ADIIAVDLCDQIASVPYPLATPEELAATVKLVED-------------IGS 74 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHH-------------HTC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CeEEEEecccccccccccccchHHHHHHHHHHHh-------------cCC
Confidence 357889999987653 567788888 789999987 5666555444331 123
Q ss_pred cEEEEEcCccccCC----------CCCCccEEEEccccccC
Q 002345 758 SAVLFDGSITVFDS----------RLHGFDIGTCLEVIEHM 788 (933)
Q Consensus 758 nVefi~GDaedLp~----------~~~sFDlVVc~eVLEHL 788 (933)
++.++.+|+.+... ..+..|+++.+--+.+.
T Consensus 75 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~ 115 (278)
T 3sx2_A 75 RIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPM 115 (278)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 68999999987532 12478999987765444
No 494
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=35.39 E-value=86 Score=32.61 Aligned_cols=76 Identities=7% Similarity=-0.067 Sum_probs=52.0
Q ss_pred CCCCEEEEEcCCcC----h-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002345 693 SCATTLVDFGCGSG----S-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 767 (933)
Q Consensus 693 ~~g~rVLDIGCGtG----~-fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDae 767 (933)
..++++|=.|.+.| . +...|++.| .+|+.+|.++...+.+.+.... ..++.++.+|+.
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~Dv~ 91 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAG---AELAFTYQGDALKKRVEPLAEE--------------LGAFVAGHCDVA 91 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTT---CEEEEEECSHHHHHHHHHHHHH--------------HTCEEEEECCTT
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHh--------------cCCceEEECCCC
Confidence 46789999997633 2 567788888 7899999997655555433221 125788999998
Q ss_pred ccCC----------CCCCccEEEEcccc
Q 002345 768 VFDS----------RLHGFDIGTCLEVI 785 (933)
Q Consensus 768 dLp~----------~~~sFDlVVc~eVL 785 (933)
+... ..+..|+++.+--+
T Consensus 92 d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 119 (293)
T 3grk_A 92 DAASIDAVFETLEKKWGKLDFLVHAIGF 119 (293)
T ss_dssp CHHHHHHHHHHHHHHTSCCSEEEECCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 7532 13578999987644
No 495
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=35.28 E-value=77 Score=32.07 Aligned_cols=76 Identities=9% Similarity=-0.060 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002345 694 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770 (933)
Q Consensus 694 ~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedLp 770 (933)
.++++|=.|++.|. +...|++.| .+|+.+|.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~Dv~~~~ 69 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAEG---FTVFAGRRNGEKLAPLVAEIEA-------------AGGRIVARSLDARNED 69 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHTT---CEEEEEESSGGGGHHHHHHHHH-------------TTCEEEEEECCTTCHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCeEEEEECcCCCHH
Confidence 56789999988763 567778887 7899999999888777665542 1247899999998753
Q ss_pred CC---------CCCccEEEEcccc
Q 002345 771 SR---------LHGFDIGTCLEVI 785 (933)
Q Consensus 771 ~~---------~~sFDlVVc~eVL 785 (933)
.- .+..|+++.+--+
T Consensus 70 ~v~~~~~~~~~~g~id~lv~nAg~ 93 (252)
T 3h7a_A 70 EVTAFLNAADAHAPLEVTIFNVGA 93 (252)
T ss_dssp HHHHHHHHHHHHSCEEEEEECCCC
T ss_pred HHHHHHHHHHhhCCceEEEECCCc
Confidence 20 1578999986654
No 496
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=35.26 E-value=54 Score=35.62 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=30.2
Q ss_pred CCCEEEEEcCC-cChHHHH-HhcCCCCCceEEEEeCChHHHHHHHHH
Q 002345 694 CATTLVDFGCG-SGSLLDS-LLDYPTALEKIVGVDISQKSLSRAAKI 738 (933)
Q Consensus 694 ~g~rVLDIGCG-tG~fL~~-LAr~g~~f~~VtGVDIS~emLe~Arkr 738 (933)
++.+|+=+|+| .|..... +...| .+|+++|.+++-++.+++.
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~G---a~V~v~dr~~~r~~~~~~~ 209 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLG---AQVQIFDINVERLSYLETL 209 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHh
Confidence 45899999997 3444433 34455 5899999999888877654
No 497
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=35.24 E-value=36 Score=36.66 Aligned_cols=49 Identities=24% Similarity=0.330 Sum_probs=36.4
Q ss_pred HHhhcCCCCEEEEEcCCc-ChHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002345 688 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 688 d~L~~~~g~rVLDIGCGt-G~fL~~LAr~g~~f~~VtGVDIS~emLe~Ark 737 (933)
+.....++.+||-+|+|. |.++..+++..+ ..+|+++|.+++.++.+++
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~ 234 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKE 234 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH
Confidence 334455788999999874 777777776543 2389999999998888854
No 498
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=35.20 E-value=15 Score=41.37 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCc-ChHHHHHh-cCCCCCceEEEEeCChHHHHHHHH
Q 002345 694 CATTLVDFGCGS-GSLLDSLL-DYPTALEKIVGVDISQKSLSRAAK 737 (933)
Q Consensus 694 ~g~rVLDIGCGt-G~fL~~LA-r~g~~f~~VtGVDIS~emLe~Ark 737 (933)
++.+|+=+|+|. |.....++ ..| .+|+++|.++.-++.+++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lG---a~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLG---AVVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT---CEEEEECSSTTHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHH
Confidence 568999999994 54444444 455 689999999988877754
No 499
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=35.09 E-value=58 Score=33.62 Aligned_cols=78 Identities=18% Similarity=0.151 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCCcCh---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002345 693 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 769 (933)
Q Consensus 693 ~~g~rVLDIGCGtG~---fL~~LAr~g~~f~~VtGVDIS~emLe~ArkrL~a~ls~~~~~~~Pr~~~~nVefi~GDaedL 769 (933)
..++++|=.|++.|. +...|++.| .+|+.+|.+++.++...+.+.. ...++.++.+|+.+.
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~Dl~d~ 93 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEAG---AQVAVAARHSDALQVVADEIAG-------------VGGKALPIRCDVTQP 93 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESSGGGGHHHHHHHHH-------------TTCCCEEEECCTTCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCeEEEEEcCCCCH
Confidence 467899999987663 557778887 7899999998877766555432 123678889999875
Q ss_pred CC----------CCCCccEEEEccccc
Q 002345 770 DS----------RLHGFDIGTCLEVIE 786 (933)
Q Consensus 770 p~----------~~~sFDlVVc~eVLE 786 (933)
.. ..+..|+++.+--+.
T Consensus 94 ~~v~~~~~~~~~~~g~iD~lvnnAg~~ 120 (276)
T 3r1i_A 94 DQVRGMLDQMTGELGGIDIAVCNAGIV 120 (276)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 32 124789999876543
No 500
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=35.03 E-value=37 Score=35.72 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=34.6
Q ss_pred HHhhcCCCCEEEEEcC--CcChHHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 002345 688 QHIKESCATTLVDFGC--GSGSLLDSLLDYPTALEKIVGVDISQKSLSRAA 736 (933)
Q Consensus 688 d~L~~~~g~rVLDIGC--GtG~fL~~LAr~g~~f~~VtGVDIS~emLe~Ar 736 (933)
+.....++++||-.|+ |.|..+..+++..+ .+|+++|.+++.++.++
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~ 187 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLK 187 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 3344557889999998 56776666665332 68999999998888773
Done!