RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 002345
(933 letters)
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 174 bits (444), Expect = 5e-47
Identities = 84/222 (37%), Positives = 117/222 (52%), Gaps = 24/222 (10%)
Query: 676 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRA 735
P L++QR+E + ++ES A +++D GCG G LL LL E+I GVD+S + L A
Sbjct: 264 PSLNRQRLEAVVAALRESGARSVLDLGCGEGKLLRLLLAEK-QFERIAGVDVSARELEIA 322
Query: 736 AKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQ 795
A+ +L KLD P + LF GS+T D RL GFD +EVIEH++
Sbjct: 323 AR----RL--KLDRM-PERQRERIQLFQGSLTYRDKRLKGFDAAVLVEVIEHLDPPRLPA 375
Query: 796 FGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWT 855
+V RP +IV+TPN EYN + + L + R+ DH+FEWT
Sbjct: 376 LERVVFEFARPGTVIVTTPNAEYNVLFE---------------SLPAGGLRHRDHRFEWT 420
Query: 856 RDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFR 897
R +F WA +A R Y+VEF + G D E G +Q+AVF
Sbjct: 421 RAEFAAWAEGVAERFGYTVEFLPI-GDEDPEVGAPTQMAVFT 461
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 50.1 bits (120), Expect = 1e-07
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 699 VDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 758
+D GCG+G+LL +LL+ LE GVDIS +L AA+ +L+ +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLE-YTGVDISPAALEAAAE----RLAALGLLDAVRVRLDV 55
Query: 759 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA 793
D FD+ V+ H+ + A
Sbjct: 56 LDAIDLD-------PGSFDVVVASNVLHHLADPRA 83
>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase. This
model represents an O-methyltransferase believed to act
at two points in the ubiquinone biosynthetic pathway in
bacteria (UbiG) and fungi (COQ3). A separate methylase
(MenG/UbiE) catalyzes the single C-methylation step. The
most commonly used names for genes in this family do not
indicate whether this gene is an O-methyl, or C-methyl
transferase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 224
Score = 50.4 bits (121), Expect = 1e-06
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 682 RVEYALQHIKES----CATTLVDFGCGSGSLLDSLLDYPTALEK--IVGVDISQKSLSRA 735
R++Y I+++ ++D GCG G LL P A + G+D S++++
Sbjct: 29 RLDYIRDTIRKNKKPLFGLRVLDVGCGGG-----LLSEPLARLGANVTGIDASEENI-EV 82
Query: 736 AKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQ 795
AK+ H+K L CT V+ + + FD+ TC+EV+EH+ +
Sbjct: 83 AKL-HAKKDPLLKIEYRCTSVE---------DLAEKGAKSFDVVTCMEVLEHV--PDPQA 130
Query: 796 FGNIVLSSFRPR-ILIVSTPN 815
F +P IL ST N
Sbjct: 131 FIRACAQLLKPGGILFFSTIN 151
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 46.5 bits (111), Expect = 3e-06
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 17/98 (17%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756
++D GCG+GSL L ++ GVD+S + L A + L ++
Sbjct: 4 RVLDIGCGTGSLAIELARLFPGA-RVTGVDLSPEMLELARENAKLALGPRIT-------- 54
Query: 757 KSAVLFDGSITVFDSRLHGFDI----GTCLEVIEHMEE 790
G L GFD G +++E ++
Sbjct: 55 ----FVQGDAPDALDLLEGFDAVFIGGGGGDLLELLDA 88
>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif. Sequences
gathered for seed by HMM_iterative_training Putative
motif shared by proteins that bind to dsRNA. At least
some DSRM proteins seem to bind to specific RNA
targets. Exemplified by Staufen, which is involved in
localisation of at least five different mRNAs in the
early Drosophila embryo. Also by interferon-induced
protein kinase in humans, which is part of the cellular
response to dsRNA.
Length = 66
Score = 42.3 bits (100), Expect = 4e-05
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 50 IPQKGP---CLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92
+ ++GP + ++ + + T KK+A+Q AAEKAL+KL
Sbjct: 21 VEEEGPPHSPTFTVTVTVNGKKYGTGTGSSKKEAKQLAAEKALQKL 66
>gnl|CDD|225137 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase [Coenzyme metabolism].
Length = 243
Score = 45.4 bits (108), Expect = 5e-05
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 23/122 (18%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALE--KIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 754
++D GCG G L + L A + G+D S+K + A +H+ S ++
Sbjct: 62 RVLDVGCGGGILSEPL-----ARLGASVTGIDASEKPIEVAK--LHALESG-VNIDYRQA 113
Query: 755 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813
V+ + G FD+ TC+EV+EH+ D S +P IL +ST
Sbjct: 114 TVE-DLASAG---------GQFDVVTCMEVLEHV-PDPESFLRACA-KLVKPGGILFLST 161
Query: 814 PN 815
N
Sbjct: 162 IN 163
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 42.3 bits (100), Expect = 5e-05
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 20/95 (21%)
Query: 699 VDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 758
+D GCG+G L ++L A ++ GVD+S + L+ A K+ D +
Sbjct: 1 LDVGCGTGLLAEALARRGGA--RVTGVDLSPEMLALA--------RKRAPRKFVVGDAED 50
Query: 759 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA 793
D S FD+ V+ H+ + E
Sbjct: 51 LPFPDES----------FDVVVSSLVLHHLPDPER 75
>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional.
Length = 233
Score = 44.8 bits (107), Expect = 8e-05
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALE--KIVGVDISQKSLSRAAKII 739
R+ Y +H ++D GCG G L +S+ A + G+D S++++ A++
Sbjct: 36 RLNYIREHAGGLFGKRVLDVGCGGGILSESM-----ARLGADVTGIDASEENI-EVARL- 88
Query: 740 HSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEH 787
H+ S L T + FD+ TC+E++EH
Sbjct: 89 HALESG-LKIDYRQTTAEELA---------AEHPGQFDVVTCMEMLEH 126
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 41.7 bits (98), Expect = 3e-04
Identities = 33/182 (18%), Positives = 57/182 (31%), Gaps = 55/182 (30%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756
++D GCG+G LL L + + GVD S A ++ L D AV
Sbjct: 25 RVLDIGCGTGILLRLLRERGF---DVTGVDPS------PAAVLIFSLFDAPDPAVLA--- 72
Query: 757 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHME--EDEASQFGNIVLSSFRPR-ILIVST 813
+D+ T EV+EH+ Q ++ +P +L++ST
Sbjct: 73 -----------------GKYDLITAFEVLEHLPDPPALLQQLRELL----KPGGVLLIST 111
Query: 814 PNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYS 873
P DD + H ++ + L + +
Sbjct: 112 PLA---------------DDDARLFANWHYLRPRNTHISFYSEESLK----RLLEKAGFE 152
Query: 874 VE 875
+
Sbjct: 153 LV 154
>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif. Binding is not
sequence specific but is highly specific for double
stranded RNA. Found in a variety of proteins including
dsRNA dependent protein kinase PKR, RNA helicases,
Drosophila staufen protein, E. coli RNase III, RNases
H1, and dsRNA dependent adenosine deaminases.
Length = 68
Score = 39.2 bits (92), Expect = 4e-04
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 52 QKGPC---LYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92
++GP + + + KK+A+Q+AAE AL KL
Sbjct: 25 EEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 40.5 bits (95), Expect = 0.001
Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 695 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKL-----DA 749
++D GCG+G L L + ++VG+DIS++++ +A + + + D
Sbjct: 4 GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDI 63
Query: 750 AVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-I 808
++ L D S FD+ EV+ H+ D I + +P +
Sbjct: 64 ----EELPQLQLEDNS----------FDVVISNEVLNHL-PDPDKVLEEI-IRVLKPGGV 107
Query: 809 LIVSTPNYEYNAI 821
LIVS P
Sbjct: 108 LIVSDPVLLSELP 120
>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif.
Length = 67
Score = 38.0 bits (89), Expect = 0.001
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 50 IPQKGP---CLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93
+ ++GP + ++++ KK+A+Q AAE AL L
Sbjct: 21 VKEEGPDHAPRFTVTVKVGGKRTGEGEGSSKKEAKQRAAEAALRSLK 67
>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 40.9 bits (97), Expect = 0.002
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAK 737
VE+AL+ + ++D G GSG++ +L P A ++ VDIS ++L+ A +
Sbjct: 97 VEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDA--EVTAVDISPEALAVARR 150
>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein family
are HemK (PrmC), a protein once thought to be involved
in heme biosynthesis but now recognized to be a
protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3 [Protein fate, Protein modification
and repair].
Length = 251
Score = 40.5 bits (96), Expect = 0.002
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAK 737
VE AL+ +K ++D G GSG++ +L P A ++ VDIS ++L+ A K
Sbjct: 77 VEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDA--RVTAVDISPEALAVARK 129
>gnl|CDD|215319 PLN02585, PLN02585, magnesium protoporphyrin IX methyltransferase.
Length = 315
Score = 37.5 bits (87), Expect = 0.023
Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 20/149 (13%)
Query: 681 QRVEYALQHIKESC---ATTLVDFGCGSGSLLDSLLDYPTALE--KIVGVDISQKSLSRA 735
Q VE L + E T+ D GCG+GS L P ALE + DIS ++ A
Sbjct: 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGS-----LAIPLALEGAIVSASDISAAMVAEA 182
Query: 736 AKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQ 795
+ L+ +P + G +D TCL+V+ H +D+A
Sbjct: 183 ERRAKEALAALPPEVLPKFEANDLESLSGK----------YDTVTCLDVLIHYPQDKADG 232
Query: 796 FGNIVLSSFRPRILIVSTPNYEYNAILQK 824
+ S R++I P Y IL++
Sbjct: 233 MIAHLASLAEKRLIISFAPKTLYYDILKR 261
>gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional.
Length = 272
Score = 37.2 bits (87), Expect = 0.025
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 677 PLSKQRVEYALQHIKESCATTLVDFGCGSG----SLLDSLLDYPTALEKIVGVDISQKSL 732
PL V L + AT L+D GCG G +L D+L + T ++ G+DIS+ ++
Sbjct: 69 PLR-DAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTM--QLFGLDISKVAI 125
Query: 733 SRAAK 737
AAK
Sbjct: 126 KYAAK 130
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the UbiE
enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a wide
distribution of bacteria and eukaryotes, but no archaea.
An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC 2.1.1.17)
from Rhodobacter sphaeroides. Note that a number of
non-orthologous genes which are members of pfam03737
have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 36.9 bits (86), Expect = 0.032
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
A++ I ++D CG+G L L K+ GVD S + L A K
Sbjct: 29 RRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKK 82
>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription].
Length = 235
Score = 36.5 bits (85), Expect = 0.037
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 75 KKKKDAEQSAAEKALEKLGIDPSP 98
+ KK+AEQ+AAE+AL+KLG+
Sbjct: 212 RSKKEAEQAAAEQALKKLGVKEPA 235
>gnl|CDD|132479 TIGR03438, egtD_ergothio, dimethylhistidine N-methyltransferase.
This model represents a distinct set of uncharacterized
proteins found in the bacteria. Analysis by PSI-BLAST
shows remote sequence homology to methyltransferases
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Glutathione and analogs].
Length = 301
Score = 36.8 bits (86), Expect = 0.046
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 13/73 (17%)
Query: 668 RMEQALFSPPLSKQRVEYAL---QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVG 724
R E A+ +A C LV+ G GS LLD + V
Sbjct: 44 RTEAAILE--------RHADEIAAATGAGC--ELVELGSGSSRKTRLLLDALRQPARYVP 93
Query: 725 VDISQKSLSRAAK 737
+DIS +L +A
Sbjct: 94 IDISADALKESAA 106
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 36.1 bits (84), Expect = 0.050
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
++D GCG G+ L ++VG+D S+ L+ A +
Sbjct: 22 RVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKE 62
>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed.
Length = 229
Score = 35.9 bits (84), Expect = 0.068
Identities = 11/17 (64%), Positives = 16/17 (94%)
Query: 77 KKDAEQSAAEKALEKLG 93
KK+AEQ+AA++AL+KL
Sbjct: 211 KKEAEQAAAKQALKKLK 227
>gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW. This
protein is found alongside MetX, of the enzyme that
acylates homoserine as a first step toward methionine
biosynthesis, in many species. It appears to act in
methionine biosynthesis but is not fully characterized
[Amino acid biosynthesis, Aspartate family].
Length = 194
Score = 35.0 bits (81), Expect = 0.080
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 696 TTLVDFGCGSGSLLDSLLDYPTALEKIV---GVDISQKSL----SRAAKIIHSKLSKKLD 748
+ ++D GCG G LL L D EK V G++I Q + +R +I L + L+
Sbjct: 15 SRVLDLGCGDGELLALLRD-----EKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLE 69
Query: 749 A 749
A
Sbjct: 70 A 70
>gnl|CDD|190615 pfam03368, dsRNA_bind, Double stranded RNA binding domain. This
domain is a divergent double stranded RNA-binding
domain. It is found in members of the Dicer protein
family which function in RNA interference, an
evolutionarily conserved mechanism for gene silencing
using double-stranded RNA (dsRNA) molecules.
Length = 91
Score = 33.0 bits (76), Expect = 0.097
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 55 PCLYRCSLQLPEFS----VVSETFKKKKDAEQSAAEKALEKL 92
Y C++ LP S +V + + K+ A+QSAA KA +KL
Sbjct: 30 DGGYVCTVILPLNSPVREIVGKPMRSKRLAKQSAAFKACKKL 71
>gnl|CDD|234080 TIGR02987, met_A_Alw26, type II restriction m6 adenine DNA
methyltransferase, Alw26I/Eco31I/Esp3I family. Members
of this family are the m6-adenine DNA methyltransferase
protein, or domain of a fusion protein that also carries
m5 cytosine methyltransferase activity, of type II
restriction systems of the Alw26I/Eco31I/Esp3I family. A
methyltransferase of this family is alway accompanied by
a type II restriction endonuclease from the
Alw26I/Eco31I/Esp3I family (TIGR02986) and by an
adenine-specific modification methyltransferase. Members
of this family are unusual in that regions of similarity
to homologs outside this family are circularly permuted
[DNA metabolism, Restriction/modification].
Length = 524
Score = 35.5 bits (82), Expect = 0.14
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 18/116 (15%)
Query: 674 FSPP-LSKQRVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGV---- 725
F+PP ++K V + I + S T ++D CG G L+ +LL + V
Sbjct: 7 FTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNI 66
Query: 726 ---DISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDI 778
DI + L RA K++ L+ V + S VL +S L FDI
Sbjct: 67 YFADIDKTLLKRAKKLL--GEFALLEINVINFNSLSYVLL-----NIESYLDLFDI 115
>gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function
prediction only].
Length = 257
Score = 34.7 bits (80), Expect = 0.18
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 687 LQHIKESCATTLVDFGCGSGSLLDSLLD-YPTALEKIVGVDISQKSLSRAA 736
L + +VD GCG G+ + L +P A I G+D S L++AA
Sbjct: 23 LARVPLERPRRVVDLGCGPGNSTELLARRWPDA--VITGIDSSPAMLAKAA 71
>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial. This family
consists of bacterial examples of ribonuclease III. This
enzyme cleaves double-stranded rRNA. It is involved in
processing ribosomal RNA precursors. It is found even in
minimal genones such as Mycoplasma genitalium and
Buchnera aphidicola, and in some cases has been shown to
be an essential gene. These bacterial proteins contain a
double-stranded RNA binding motif (pfam00035) and a
ribonuclease III domain (pfam00636). Eukaryotic homologs
tend to be much longer proteins with additional domains,
localized to the nucleus, and not included in this
family [Transcription, RNA processing].
Length = 220
Score = 33.7 bits (78), Expect = 0.30
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 77 KKDAEQSAAEKALEKL 92
KK+AEQ+AA+ ALEKL
Sbjct: 205 KKEAEQNAAKAALEKL 220
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 33.3 bits (73), Expect = 0.44
Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 9/128 (7%)
Query: 643 LPPQELILAAADDSARTFSLLSSKDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFG 702
L EL+ + R LL + + + L L + + ++D G
Sbjct: 3 LLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPG------GLGVLDIG 56
Query: 703 CGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 762
CG+G L L +VGVD+S + L+ A +D V D VL
Sbjct: 57 CGTGRLAL-LARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVV--ADALGGVLP 113
Query: 763 DGSITVFD 770
FD
Sbjct: 114 FEDSASFD 121
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 31.5 bits (72), Expect = 0.45
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 698 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
++D GCG+G +L +L + GVDIS+++L A +
Sbjct: 1 ILDLGCGTGRVLRAL--ARAGPSSVTGVDISKEALELAKE 38
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 31.6 bits (72), Expect = 0.50
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI 738
++D GCG+G+L +L P A ++ GVDIS +L A K
Sbjct: 1 RVLDLGCGTGALALALASGPGA--RVTGVDISPVALELARKA 40
>gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat)
[General function prediction only].
Length = 287
Score = 33.2 bits (76), Expect = 0.52
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 14/95 (14%)
Query: 644 PPQELILAAADDSARTF--SLLSSKDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDF 701
PP + D A F L+ ++ +S P + + + ++D
Sbjct: 82 PPSAYVETLFDQYAERFDHILV------DKLGYSVP---ELLAEMIGKADLGPFRRMLDL 132
Query: 702 GCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAA 736
GCG+G ++L D L GVDIS+ L++A
Sbjct: 133 GCGTGLTGEALRDMADRLT---GVDISENMLAKAH 164
>gnl|CDD|99875 cd06064, H2MP_F420-Reduc, Endopeptidases belonging to F420-reducing
hydrogenases group. These hydrogenases from methanogens
are encoded by the fru, frc, or frh genes. Sequence
comparison indicates that fruD and frcD gene products
from Methanococcus voltae are similar to HycI protease
of Escherichia coli and are putatively involved in the
C-terminal processing of large subunits (FruA and FrcA
respectively). FrhD (F420 reducing hydrogenase delta
subunit) enzyme belongs to the gene cluster of
8-hydroxy-5-deazaflavin (F420) reducing hydrogenase
(FRH) from the thermophilic methanogen Methanobacterium
thermoautotrophicum delta H. FrhD subunit is putatively
involved in the processing of the coenzyme F420
hydrogenase-processing. It is similar to those frhD
genes found in Methanomicrobia and Methanobacteria. It
is different from the FrhD conserved domain found in
methyl viologen-reducing hydrogenase and
F420-non-reducing hydrogenase iron-sulfur subunit D.
Length = 150
Score = 32.2 bits (74), Expect = 0.53
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDI 727
+E + ++D G G+ LL +LLD + +KI+ VD
Sbjct: 20 IEELEKLELLPDNVQVIDAGTGAPHLLFTLLDEESKPKKIIIVDA 64
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 31.3 bits (71), Expect = 0.80
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 740
++D G GSG+ L + ++VGV++ ++ + A + +
Sbjct: 3 RVLDPGAGSGAFLLAAARA-GPDARVVGVELDPEAAALARRRLA 45
>gnl|CDD|222313 pfam13679, Methyltransf_32, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 143
Score = 31.4 bits (72), Expect = 0.83
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 695 ATTLVDFGCGSGSLLDSLLDYPTALE---KIVGVDIS----QKSLSRAAKI 738
T+VD G G G L L + ++VG+D +K+ +RA K+
Sbjct: 26 CITVVDHGAGKGYLGFILYYLLFKRKYGVRVVGIDARAELVEKANARAQKL 76
>gnl|CDD|222534 pfam14090, HTH_39, Helix-turn-helix domain. This helix-turn-helix
domain is often found in phage proteins and is likely to
be DNA-binding.
Length = 70
Score = 29.2 bits (66), Expect = 1.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 541 QQRKMGEKLLQANSINTLNAIPEHGIYCLS 570
Q ++ L + SI TL A+ E GI L+
Sbjct: 2 QCARILAALRRGGSITTLEALRELGITRLA 31
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 31.5 bits (72), Expect = 1.7
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAK 737
VE AL + + ++D G GSG++ +L P A +++ VDIS +L+ A +
Sbjct: 100 VEAALALLLQL-DKRILDLGTGSGAIAIALAKEGPDA--EVIAVDISPDALALARE 152
>gnl|CDD|234970 PRK01683, PRK01683, trans-aconitate 2-methyltransferase;
Provisional.
Length = 258
Score = 31.1 bits (71), Expect = 2.5
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 687 LQHIKESCATTLVDFGCGSGSLLDSLLD-YPTALEKIVGVDISQKSLSRAAK 737
L + +VD GCG G+ + L++ +P A +I G+D S L+ A
Sbjct: 24 LARVPLENPRYVVDLGCGPGNSTELLVERWPAA--RITGIDSSPAMLAEARS 73
>gnl|CDD|184963 PRK15001, PRK15001, SAM-dependent 23S ribosomal RNA mG1835
methyltransferase; Provisional.
Length = 378
Score = 31.2 bits (70), Expect = 2.8
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKL 743
+ +QH+ E+ +VD GCG+G + +LLD P A K+V VD S +++ + + + +
Sbjct: 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA--KVVFVDESPMAVASSRLNVETNM 276
Query: 744 SKKLD 748
+ LD
Sbjct: 277 PEALD 281
>gnl|CDD|234014 TIGR02786, addB_alphas, double-strand break repair protein AddB,
alphaproteobacterial type. AddAB is a system well
described in the Firmicutes as a replacement for RecBCD
in many prokaryotes for the repair of double stranded
break DNA damage. More recently, a distantly related gene
pair conserved in many alphaproteobacteria was shown also
to function in double-stranded break repair in Rhizobium
etli. This family consists of AddB proteins of the
alphaproteobacteial type [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1021
Score = 31.2 bits (71), Expect = 3.6
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 75 KKKKDAEQSAAEKALEKLGIDPSPNVPSAEEAWDKLIASVKHLFSNE--FLSSQSPLR 130
E +EK +P++ AEEAW++LI ++ + + S P
Sbjct: 948 NGPVGEESILSEKGKGGKEPQDAPDL--AEEAWERLIQLIRAYDDPDQGYTSRALPFG 1003
>gnl|CDD|100106 cd01425, RPS2, Ribosomal protein S2 (RPS2), involved in formation
of the translation initiation complex, where it might
contact the messenger RNA and several components of the
ribosome. It has been shown that in Escherichia coli
RPS2 is essential for the binding of ribosomal protein
S1 to the 30s ribosomal subunit. In humans, most likely
in all vertebrates, and perhaps in all metazoans, the
protein also functions as the 67 kDa laminin receptor
(LAMR1 or 67LR), which is formed from a 37 kDa
precursor, and is overexpressed in many tumors. 67LR is
a cell surface receptor which interacts with a variety
of ligands, laminin-1 and others. It is assumed that the
ligand interactions are mediated via the conserved
C-terminus, which becomes extracellular as the protein
undergoes conformational changes which are not well
understood. Specifically, a conserved palindromic motif,
LMWWML, may participate in the interactions. 67LR plays
essential roles in the adhesion of cells to the basement
membrane and subsequent signalling events, and has been
linked to several diseases. Some evidence also suggests
that the precursor of 67LR, 37LRP is also present in the
nucleus in animals, where it appears associated with
histones.
Length = 193
Score = 29.9 bits (68), Expect = 4.0
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 18/106 (16%)
Query: 732 LSRAAKIIHSKLSK---------KLDAAVPCTDVKSAVLFDGSITVFDSRLHGF-----D 777
L A I + +K K A VK GS V L G
Sbjct: 42 LRLALNFIANIAAKGGKILFVGTKPQAQRA---VKKFAERTGSFYVNGRWLGGTLTNWKT 98
Query: 778 IGTCLEVIEHMEEDEASQFGNIVLSSFR-PRILIVSTPNYEYNAIL 822
I ++ ++ +E+++ + + FR P ++IV P E+ AI
Sbjct: 99 IRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVLDPRKEHQAIR 144
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 30.3 bits (69), Expect = 4.2
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
Query: 697 TLVDFGCGSGSL-LDSLLDYPTALEKIVGVDISQKSLSRAAK 737
T++D GCGSG L + +L +K+VGVDI ++ RAAK
Sbjct: 163 TVLDVGCGSGILAIAALK---LGAKKVVGVDIDPVAV-RAAK 200
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 30.3 bits (69), Expect = 4.2
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 25/88 (28%)
Query: 674 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLL---DYPTALEKIVGVDISQK 730
F+P K R+ +D G G+G+L LL A KIVGV+I ++
Sbjct: 39 FAPVPKKGRI---------------LDLGAGNGAL--GLLLAQRTEKA--KIVGVEIQEE 79
Query: 731 SLSRAAK-IIHSKLSKKLDAAVPCTDVK 757
+ A + + + L +++ V D+K
Sbjct: 80 AAEMAQRNVALNPLEERIQ--VIEADIK 105
>gnl|CDD|227134 COG4797, COG4797, Predicted regulatory domain of a
methyltransferase [General function prediction only].
Length = 268
Score = 30.2 bits (68), Expect = 4.4
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 6/76 (7%)
Query: 291 KSYLLDLSSDLPNVEEVVDFEGSLNPRASYLYGQDIYGDAILASI-----GYTRKSEGLF 345
+ L DL+ +LPN + S L DI + + GY R
Sbjct: 105 MAILYDLAENLPNPLRFEQLTKEAFKKNSKLLLNDILARLLNNAYSSDNQGYPRIETVKK 164
Query: 346 HEDITLQSYYR-MLIH 360
H L + +
Sbjct: 165 HVKAKLTDKTAKFVEY 180
>gnl|CDD|216673 pfam01739, CheR, CheR methyltransferase, SAM binding domain. CheR
proteins are part of the chemotaxis signaling mechanism
in bacteria. CheR methylates the chemotaxis receptor at
specific glutamate residues. CheR is an
S-adenosylmethionine- dependent methyltransferase - the
C-terminal domain (this one) binds SAM.
Length = 194
Score = 29.9 bits (68), Expect = 4.8
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 33/118 (27%)
Query: 702 GCGSG----SLLDSLLDY-PTALE---KIVGVDISQKSLSRAAKII--HSKLSKKLDAAV 751
GC SG SL L + P AL KI+ DI +L +A + +L +
Sbjct: 38 GCSSGEEPYSLAMLLAETLPNALPWDFKILATDIDLSALEKARAGVYPERELE-----GL 92
Query: 752 P------------------CTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEED 791
P ++K VLF+ + L FD+ C V+ + +E+
Sbjct: 93 PPELLRRYFTKGAGGGYRVKPEIKEMVLFEYHNLLDYPPLGDFDVIFCRNVLIYFDEE 150
>gnl|CDD|218873 pfam06050, HGD-D, 2-hydroxyglutaryl-CoA dehydratase, D-component.
Degradation of glutamate via the hydroxyglutarate
pathway involves the syn-elimination of water from
2-hydroxyglutaryl-CoA. This anaerobic process is
catalyzed by 2-hydroxyglutaryl-CoA dehydratase, an
enzyme with two components (A and D) that reversibly
associate during reaction cycles. This component
contains one non-reducible [4Fe-4S]2+ cluster and a
reduced riboflavin 5'-monophosphate.
Length = 347
Score = 30.4 bits (69), Expect = 5.0
Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 24/117 (20%)
Query: 719 LEKIVGVDISQKSLSRAAKIIHSKLSK-----KLDAAVPCTDVKSAVLFDGSITVFDSRL 773
LE+I G I +++L A ++++ +L P IT D
Sbjct: 116 LEEITGRKIDEEALGEAIEVLNEARKALRELLELRKCYPSP-----------ITGGDLLY 164
Query: 774 HGFDIGTCL---EVIEHMEE--DEASQ---FGNIVLSSFRPRILIVSTPNYEYNAIL 822
L E E +EE DE GN V+ R+L+ P + + L
Sbjct: 165 LLLSAAYDLGKEEATELLEELLDELEGRCRAGNYVVRKELKRLLLTGIPVWYPSLKL 221
>gnl|CDD|218093 pfam04453, OstA_C, Organic solvent tolerance protein. Family
involved in organic solvent tolerance in bacteria. The
region contains several highly conserved, potentially
catalytic, residues.
Length = 385
Score = 30.5 bits (69), Expect = 5.0
Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 37/126 (29%)
Query: 244 VTLNVSSTGYYL--------DVIARNLDQTDGNKIL------VSRTIGKASSEMRLYFAA 289
++L S+ +L +++ GN+I VSR + S + L F
Sbjct: 134 LSLPFSTPWGFLTPELSLRGTYYDLDVNYGPGNRITGTLDSSVSRVLPTFSLDSGLPFER 193
Query: 290 PKSYLLDLSSDLPNVEEVVDFEGSLNPRASYLYGQDIY------GDAILASIGYTRKSEG 343
+ +L PRA YLY D+ YT
Sbjct: 194 DTELGGGYTQ-------------TLEPRAQYLYVPYRDQGNLPNFDSSSLDFDYT----N 236
Query: 344 LFHEDI 349
LF ++
Sbjct: 237 LFRDNR 242
>gnl|CDD|119408 cd06660, Aldo_ket_red, Aldo-keto reductases (AKRs) are a
superfamily of soluble NAD(P)(H) oxidoreductases whose
chief purpose is to reduce aldehydes and ketones to
primary and secondary alcohols. AKRs are present in all
phyla and are of importance to both health and
industrial applications. Members have very distinct
functions and include the prokaryotic
2,5-diketo-D-gluconic acid reductases and beta-keto
ester reductases, the eukaryotic aldose reductases,
aldehyde reductases, hydroxysteroid dehydrogenases,
steroid 5beta-reductases, potassium channel
beta-subunits and aflatoxin aldehyde reductases, among
others.
Length = 285
Score = 29.8 bits (68), Expect = 5.4
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 15/52 (28%)
Query: 84 AAEKALEKLGID---------PSPNVPSAEEAW---DKLIAS--VKHL-FSN 120
A E++L++LG D P P+ P EE ++L+ ++ + SN
Sbjct: 98 AVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSN 149
>gnl|CDD|217662 pfam03657, UPF0113, Uncharacterized protein family (UPF0113).
Length = 161
Score = 29.4 bits (66), Expect = 5.7
Identities = 10/20 (50%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Query: 314 LNPRAS--YLYGQDIYGDAI 331
LNP+A +LYG+D++ D+I
Sbjct: 98 LNPKAEKLFLYGRDVFKDSI 117
>gnl|CDD|180751 PRK06922, PRK06922, hypothetical protein; Provisional.
Length = 677
Score = 30.2 bits (68), Expect = 7.0
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 696 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQ 729
T+VD G G G +LD +++ T ++I G+DIS+
Sbjct: 420 DTIVDVGAGGGVMLD-MIEEETEDKRIYGIDISE 452
>gnl|CDD|204685 pfam11599, AviRa, RRNA methyltransferase AviRa. This family of
proteins represents the methyltransferase AviRa from
Streptomyces viridochromogenes. This protein mediates
the resistance to the antibiotic avilamycin. AviRa
methylates a specific guanine base within the
peptidyl-transferase loop of the 23S ribosomal RNA.
Length = 248
Score = 29.6 bits (66), Expect = 7.2
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 674 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSL-LDYPTALEKIVGVDISQKSL 732
F L+ + E AL + +L D CG LL L L + ++ ++ DI +
Sbjct: 30 FPVRLALEIFERALARLIGDAEISLWDCCCGGAYLLSILGLLHRNSIANLIASDIDPAPI 89
Query: 733 SRAAK 737
AA
Sbjct: 90 ELAAD 94
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 29.5 bits (67), Expect = 7.5
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALE---KIVGVDISQKSLSRAAKIIHS 741
TL+D GCG G L A E +VGV +S++ L+ A K I +
Sbjct: 75 TLLDIGCGWGGLAIYA-----AEEYGVTVVGVTLSEEQLAYAEKRIAA 117
>gnl|CDD|223453 COG0376, KatG, Catalase (peroxidase I) [Inorganic ion transport and
metabolism].
Length = 730
Score = 30.1 bits (68), Expect = 7.7
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 65 PEFSVVSETFKKKKDAEQSAAEKALEKL---GIDP-----SPNVPSAEEAWDKLIASVKH 116
PE+ +S F + D A +A KL + P P VP + W + +V +
Sbjct: 385 PEYEKISRRFLEDPDEFADAFARAWFKLTHRDMGPKARYLGPEVPKEDLIWQDPLPAVDY 444
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 29.1 bits (66), Expect = 8.0
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 679 SKQRVEYA----LQHIKESCATTLVDFGCGSGSLLDSLLD-YPTALEKIVGVDISQKSLS 733
S R++ L H+ + ++D GCG G L +L P ++ VDI+ ++L
Sbjct: 12 SHGRLDIGSRLLLSHLPKPLGGKVLDLGCGYGVLGAALAKRSPDL--EVTMVDINARAL- 68
Query: 734 RAAK 737
+A+
Sbjct: 69 ESAR 72
>gnl|CDD|234556 TIGR04345, ovoA_Cterm, putative 4-mercaptohistidine
N1-methyltranferase. Ovothiol A is
N1-methyl-4-mercaptohistidine. In the absence of
S-adenosylmethione, a methyl donor, the intermediate
produced is 4-mercaptohistidine. In both Erwinia
tasmaniensis and Trypanosoma cruzi, a protein occurs
with 5-histidylcysteine sulfoxide synthase activity, but
these two enzymes and most homologs share an additional
C-terminal methyltransferase domain. Thus OvoA may be a
bifunctional enzyme with 5-histidylcysteine sulfoxide
synthase and 4-mercaptohistidine N1-methyltranferase
activity. This model describes C-terminal putative
4-mercaptohistidine N1-methyltranferase domain
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Glutathione and analogs].
Length = 242
Score = 29.1 bits (66), Expect = 9.1
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 676 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRA 735
P + E AL + +D GC G L Y +++ G+D S + + A
Sbjct: 23 PNFPVKLAELALAQFRNKSRKRALDIGCAVGRASFELARY---FDEVDGIDFSARFIRPA 79
Query: 736 AKI 738
+
Sbjct: 80 VAL 82
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 29.2 bits (66), Expect = 9.7
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 697 TLVDFGCGSGSLLDSLLD-YPTALEKIVGVDISQKSLSRAAK 737
++D CG+G + L T ++VG+DIS+ L A +
Sbjct: 54 KVLDVACGTGDMALLLAKSVGTG--EVVGLDISESMLEVARE 93
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.385
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 46,735,407
Number of extensions: 4552993
Number of successful extensions: 3984
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3960
Number of HSP's successfully gapped: 62
Length of query: 933
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 827
Effective length of database: 6,236,078
Effective search space: 5157236506
Effective search space used: 5157236506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (28.4 bits)