RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 002345
(933 letters)
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 957 bits (2475), Expect = 0.0
Identities = 457/945 (48%), Positives = 606/945 (64%), Gaps = 42/945 (4%)
Query: 8 VVAVRKMKLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEF 67
+ K TPKAII QKFG A +TV+EV D Q+GCPGLAIPQKGPCLYRC LQLPEF
Sbjct: 9 MAGGGKHTPTPKAIIHQKFGAKASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEF 68
Query: 68 SVVSETFKKKKDAEQSAAEKALEKLGIDPSPNVPSAEEAWDKLIASVKHLFSNEFLSSQS 127
SVVS FKKKKD+EQSAAE AL+KLGI P + + +EA D+++ +K++FS+EFLS++
Sbjct: 69 SVVSNVFKKKKDSEQSAAELALDKLGIRPQNDDLTVDEARDEIVGRIKYIFSDEFLSAEH 128
Query: 128 PLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187
PL H AALRRDG+ GSVP SVIA D+K+ + CK+INP VES L ++Y+M+AA +
Sbjct: 129 PLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISYVMKAAAK 188
Query: 188 LSEFVVTSEGQLSIWRKDPYPPEIKESSIIQQSESPDSICIEAIHIPSSLEMAVHPVTLN 247
L++++V S + RK+ YP EI E+ S+S S + A++IP E V TL
Sbjct: 189 LADYIVAS--PHGLRRKNAYPSEIVEALATHVSDSLHSREVAAVYIPCIDEEVVELDTLY 246
Query: 248 VSSTGYYLDVIARNLDQTDGNKILVSRTIGKAS--SEMRLYFAAPKSYLLDLSSDLP-NV 304
+SS +YLD IA L DGN++++SR GKAS SE RLY PK YL + S +
Sbjct: 247 ISSNRHYLDSIAERLGLKDGNQVMISRMFGKASCGSECRLYSEIPKKYLDNSSDASGTSN 306
Query: 305 EEVVDFEGSLNPRASYLYGQDIYGDAILASIGYTRKSEGLFHEDITLQSYYRMLIHLTPS 364
E+ S N RASY+ GQDI+GDAILAS+GY KS+ L ++D+T+ S+YR+ ++P+
Sbjct: 307 EDSSHIVKSRNARASYICGQDIHGDAILASVGYRWKSDDLDYDDVTVNSFYRICCGMSPN 366
Query: 365 GVYKLSREAILTAELPMAFTTRTNWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSE 424
G+YK+SR+A++ A+LP AFTT++NWRG PRE+L +FC QH L+EP+ S+ + +K S+
Sbjct: 367 GIYKISRQAVIAAQLPFAFTTKSNWRGPLPREILGLFCHQHRLAEPILSSSTAPVKSLSD 426
Query: 425 SSRFYEK--SAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILECSPKEFYKKQ 482
R ++K + ++ A RCEVKIF+KS+D +LECSP++FY+K+
Sbjct: 427 IFRSHKKLKVSGVDDANENLSRQKEDTPGLGHGFRCEVKIFTKSQDLVLECSPRKFYEKE 486
Query: 483 NESIENASLKVLSWLNAYFKDPDIPLEKLNNLVGALDIQCYPQNFFKKFSSYRFIHNVQQ 542
N++I+NASLK L W + +F D D+ E+ + D + N F + H+ +
Sbjct: 487 NDAIQNASLKALLWFSKFFADLDVDGEQSCDTDDDQDTKSSSPNVFAAPPILQKEHSSES 546
Query: 543 RKMG----EKLLQANSINTLNAIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEG 598
+ EK +Q+ + ++ +I + G P S
Sbjct: 547 KNTNVLSAEKRVQSITNGSVVSICYSLSLAVDPEYSSDGESPREDNESNEEMESEYSANC 606
Query: 599 ETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELP--PQELILAAADDS 656
E+ E +ES EE EFE+GTG++ P +E QM+VG+ A F P + LILA D+
Sbjct: 607 ESSVEPIESNEEIEFEVGTGSMNPHIESEVTQMTVGEYASFKMTPPDAAEALILAVGSDT 666
Query: 657 ARTFSLLSSK-----------------DRMEQALFSPPLSKQRVEYALQHIKESCATTLV 699
R SLLS + +RME A F PPLSKQRVEYAL+HI+ES A+TLV
Sbjct: 667 VRIRSLLSERPCLNYNILLLGVKGPSEERMEAAFFKPPLSKQRVEYALKHIRESSASTLV 726
Query: 700 DFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759
DFGCGSGSLLDSLLDYPT+L+ I+GVDIS K L+RAAK++H KL+K +VKSA
Sbjct: 727 DFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNK------EACNVKSA 780
Query: 760 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYN 819
L+DGSI FDSRLH DIGTCLEVIEHMEED+A +FG VLS F P++LIVSTPNYE+N
Sbjct: 781 TLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVSTPNYEFN 840
Query: 820 AILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGV 879
ILQ+S+ E + ++ Q KFRNHDHKFEWTR+QFN WA++L RHNYSVEFSGV
Sbjct: 841 TILQRSTP---ETQEENNSEPQLPKFRNHDHKFEWTREQFNQWASKLGKRHNYSVEFSGV 897
Query: 880 GGSGDREPGFASQIAVFRSRTPPEEDDLLKDGDSAHHYKVIWEWD 924
GGSG+ EPGFASQIA+FR E+ YKVIWEW
Sbjct: 898 GGSGEVEPGFASQIAIFRREASSVENVAESSM---QPYKVIWEWK 939
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 212 bits (541), Expect = 2e-63
Identities = 76/236 (32%), Positives = 110/236 (46%), Gaps = 24/236 (10%)
Query: 670 EQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQ 729
E+ L++QR+ + +K A ++D GCG G+LL LL + E+I GVD+S
Sbjct: 5 EETEKKLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSY 63
Query: 730 KSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHME 789
L RA + +P K LF S+ D R G+D T +EVIEH++
Sbjct: 64 SVLERAKDRLKI-------DRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLD 116
Query: 790 EDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHD 849
E+ F ++ RP+ +IVSTPN EYN L R+ D
Sbjct: 117 ENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGN---------------LFEGNLRHRD 161
Query: 850 HKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRTPPEED 905
H+FEWTR +F WA ++A ++ YSV F + G D E G +Q+ VF
Sbjct: 162 HRFEWTRKEFQTWAVKVAEKYGYSVRFLQI-GEIDDEFGSPTQMGVFTLGAGGHHH 216
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 212 bits (540), Expect = 2e-63
Identities = 80/231 (34%), Positives = 119/231 (51%), Gaps = 25/231 (10%)
Query: 670 EQALFSP-PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDIS 728
E A+ P L++QR+ + +K+S A ++D GCG G+LL LL E+I GVD+S
Sbjct: 4 EAAVEKPISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVS 62
Query: 729 QKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHM 788
+SL A + + +P + L G++T D R HG+D T +EVIEH+
Sbjct: 63 YRSLEIAQERLD-------RLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHL 115
Query: 789 EEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNH 848
+ F ++ +P+I+IV+TPN EYN L + K R+
Sbjct: 116 DLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFA---------------NLPAGKLRHK 160
Query: 849 DHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSR 899
DH+FEWTR QF WA ++ R Y+V+F + G D E G +Q+AVF R
Sbjct: 161 DHRFEWTRSQFQNWANKITERFAYNVQFQPI-GEADPEVGSPTQMAVFIHR 210
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 72.4 bits (177), Expect = 5e-13
Identities = 94/514 (18%), Positives = 145/514 (28%), Gaps = 197/514 (38%)
Query: 464 SKSRDPILECSPKEF---YKKQNE----------SIENASLKVLSWLNAYFK---DPDIP 507
D +L EF Y + N+ + +K + Y P
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 508 LEK-----LNNLVGALDIQCY--------PQNFFKK----FSSYR-----FIHNVQQRKM 545
+K L VG + Q ++F++ + +Y I +
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE--- 193
Query: 546 GEKLLQANSINTLNAIP--EHGI----------------YCLSIGGPDSGIYPSNGCLSF 587
L TL+A G+ Y LSI P S P G +
Sbjct: 194 ---TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI--PIS--CPLIGVIQL 246
Query: 588 ISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 647
Y V+ + G T EL R + GA +VTA
Sbjct: 247 AHYVVTAKLLGFTPGEL---RSYLK-----GATGHSQGLVTA------------------ 280
Query: 648 LILAAADDSARTFSLLSSKDRMEQALF--------------SPP---------------- 677
+ +A D S S + LF PP
Sbjct: 281 VAIAETDSWE---SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 678 ------LSKQRVEYALQHIKESCAT---------TLVDFG------CGSGSLLDSLLDYP 716
L++++V+ ++ ++ + +LV+ G G L L
Sbjct: 338 MLSISNLTQEQVQ---DYVNKTNSHLPAGKQVEISLVN-GAKNLVVSGPPQSLYGLN--- 390
Query: 717 TALEKI---VGVDISQKSLS-RAAKII----------HSKLSKKLDAAVP--CTDV-KSA 759
L K G+D S+ S R K HS L L A D+ K+
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL---LVPASDLINKDLVKNN 447
Query: 760 VLFDGS---ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP-N 815
V F+ I V+D+ FD G D G+I I+ P
Sbjct: 448 VSFNAKDIQIPVYDT----FD-G----------SDLRVLSGSISERIVD---CIIRLPVK 489
Query: 816 YEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHD 849
+E Q ++ I + P + L RN D
Sbjct: 490 WE--TTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Score = 67.0 bits (163), Expect = 2e-11
Identities = 94/619 (15%), Positives = 168/619 (27%), Gaps = 245/619 (39%)
Query: 228 IE-AIHIPSSLEMAVHPV----------TLNVSSTGYYLDVIARNLDQTDGNKILVSRTI 276
+E + +P++ + L + G+ D D+ LV + +
Sbjct: 16 LEHVLLVPTAS----FFIASQLQEQFNKILPEPTEGFAAD------DEPTTPAELVGKFL 65
Query: 277 GKASSEMRLYFAAPKSYLLDLSSDLPNVEEVVDFEGSLNPRASYLYGQDIYGDAILASIG 336
G SS + +L+L + +FE YL G DI+ A+ A +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLC--------LTEFE------NCYLEGNDIH--ALAAKLL 109
Query: 337 YTRKSEGLFHEDITLQSYYRMLIHLTPSGVYKLSREAILTAELPMAFTTRTNWRGSFPRE 396
+ + +++ +++Y + K S A+ A G+
Sbjct: 110 QENDTTLVKTKEL-IKNYITAR-IMAKRPFDKKSNSALFRAVG----------EGNAQ-- 155
Query: 397 MLF-MFCRQ----HWLSEPVFSTCSNSLKESSESSRFYEKSAAL------ESAETGKECT 445
L +F Q + E L++ Y+ L SAET E
Sbjct: 156 -LVAIFGGQGNTDDYFEE---------LRD------LYQTYHVLVGDLIKFSAETLSEL- 198
Query: 446 SGGGTAASDNVRCEVKIFSKSRDPILECSPKEFYKKQNESIENASLKVLSWLNAYFKDPD 505
+ E K+F++ + +L WL PD
Sbjct: 199 ------IRTTLDAE-KVFTQGLN------------------------ILEWLENPSNTPD 227
Query: 506 ----------IPLEKLNNLVGALDIQCY----------PQNFFKKFSSYRFIHNVQQRKM 545
PL +G + + Y P H
Sbjct: 228 KDYLLSIPISCPL------IGVIQLAHYVVTAKLLGFTPGELRSYLKGA-TGH------- 273
Query: 546 GEKLLQANSI-----------NTLNAIPEHGIYCLSIG------GPDSGIYPSNGCLSFI 588
+ L+ A +I + AI IG P++ + PS +
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAIT----VLFFIGVRCYEAYPNTSLPPSI-----L 324
Query: 589 SYSVS---------LVIEGETMKELLESREEFEFEMGTGAVI-------PQVEVVT---- 628
S+ L I T +++ + + + G + + VV+
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 629 -------------AQMSVGQS-ACFCKE--------LP---P---------QELILAAAD 654
A + QS F + LP P +LI D
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK--D 442
Query: 655 DSARTFSLLSS------------KD-RMEQALFSPPLSKQRVEYAL--QHIKESCATTLV 699
S + D R+ S + + + + + AT ++
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 700 DFG----CGSGSLLDSLLD 714
DFG G G L D
Sbjct: 503 DFGPGGASGLGVLTHRNKD 521
Score = 57.4 bits (138), Expect = 2e-08
Identities = 85/514 (16%), Positives = 150/514 (29%), Gaps = 190/514 (36%)
Query: 59 RCSLQLPE-----FSVVSETFKK----------KKDAEQSAAEKALEKLG-----IDPSP 98
L +P S + E F K D + AE + LG ++PS
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS- 75
Query: 99 NVPSAEEAWDKLIASVKHLFSNEFLSSQSPLRGH-FIAALRRDGDLYGSVPASVI----- 152
V ++ L + F N +L H A L ++ D +I
Sbjct: 76 KVGQFDQV---LNLCLTE-FENCYLEGNDI---HALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 153 AVC----------DSKL-----ANLCKLI-------NPKV---------ESSHLLVLTYI 181
A +S L +L+ N ++ H+LV I
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 182 MRAATRLSEFVVTSEGQLSIWRKDPYPPEIKESSIIQQSESPDSICIEAIHIPSSLEMAV 241
+A LSE + T+ + + + +I++ E+P + P +
Sbjct: 189 KFSAETLSELIRTTLDAEKV-----FTQGL---NILEWLENPSN-------TPDKDYLLS 233
Query: 242 HPVTLN---VSSTGYYLDVIARNLDQTDGN-------------KILVSRTIGKASSE--- 282
P++ V +Y+ V A+ L T G ++ + I + S
Sbjct: 234 IPISCPLIGVIQLAHYV-VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 283 -------MRLYF--------AAPKSYL--------LD---------LS-SDLP--NVEEV 307
+ + F A P + L L+ LS S+L V++
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 308 VD-FEGSL-----------N-PR-------ASYLYGQDIYGDAILASIGYT--------R 339
V+ L N + LYG ++ A G R
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 340 KSEG----L-----FHEDITLQSYYRMLIH-LTPSGVYKLSREAILTAEL--PMAFTTRT 387
K + L FH + L ++ L + V + ++ P+ + T
Sbjct: 413 KLKFSNRFLPVASPFHSHL-LVPASDLINKDLVKNNV------SFNAKDIQIPV-YDTFD 464
Query: 388 --NWR---GSFPREMLFMFCRQ--HWLSEPVFST 414
+ R GS ++ R W + F
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Score = 38.1 bits (88), Expect = 0.015
Identities = 52/285 (18%), Positives = 90/285 (31%), Gaps = 89/285 (31%)
Query: 283 MRLYFAAP--------------KSY---LLDLSSDLPNVEEVVDFEGSLNPRASYLYGQD 325
M LY + +Y +LD+ + P + F G + G+
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV-NLTIHFGG---EK-----GKR 1683
Query: 326 I---YGDAILASIGYTR-KSEGLFHE-DITLQSYY----RMLIHLT----PSGVYKLSRE 372
I Y I +I + K+E +F E + SY + L+ T P
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP--------- 1734
Query: 373 AILTAELPMAFTTRTNWR--GSFPREMLFMFCRQHWLSEPVFS---TCSNSLKESSESS- 426
A+ E AF + G P + F H L E ++ + ++ + S ES
Sbjct: 1735 ALTLMEK-AAFED---LKSKGLIPADATFA---GHSLGE--YAALASLADVM--SIESLV 1783
Query: 427 R--FYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILECSPKEFYKKQNE 484
FY + + S G A + R ++ ++E K+
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE----RVGKRTGW 1839
Query: 485 SIE----NAS------------LKVLS-WLNAYFKDPDIPLEKLN 512
+E N L ++ LN + K I + +L
Sbjct: 1840 LVEIVNYNVENQQYVAAGDLRALDTVTNVLN-FIKLQKIDIIELQ 1883
Score = 38.1 bits (88), Expect = 0.018
Identities = 37/214 (17%), Positives = 64/214 (29%), Gaps = 73/214 (34%)
Query: 99 NVPSAEEAWDKLIASVKHL-----FSNEFLSSQSP--LRGHFIAAL-RRDGDLYGSVPAS 150
+A++ W++ A H FS + +P L HF +R + Y ++
Sbjct: 1638 TSKAAQDVWNR--AD-NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 151 VIAVCDSKLANLCKLINPKVES---SH---LLVLTYIMRAATRLSEF-----VVTSEGQL 199
I K + K IN S LL T +F +
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT----------QFTQPALTLME---K 1741
Query: 200 SIWRKDPYPPEIKESSIIQQSESPDSICIEAIHIPSSLEMAVHPVTLNVSSTGYY--LDV 257
+ + ++K +I D+ A H SL G Y L
Sbjct: 1742 AAFE------DLKSKGLIP----ADATF--AGH---SL--------------GEYAALAS 1772
Query: 258 IARNLDQTDGNKILVSRTIGKASSEMRLYFAAPK 291
+A + +++ R G + A P+
Sbjct: 1773 LADVMSIESLVEVVFYR--GMT-----MQVAVPR 1799
Score = 33.9 bits (77), Expect = 0.35
Identities = 45/279 (16%), Positives = 79/279 (28%), Gaps = 84/279 (30%)
Query: 656 SARTFSLLSSKDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDY 715
S R +L S +E L + A Q ++E L
Sbjct: 5 STRPLTL--SHGSLEHVL---LVPTASFFIASQ-LQEQFNKIL----------------- 41
Query: 716 PTALEKIVGVD--ISQKSLSRAAKIIH---SKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770
P E D + L K + S + V + L + F+
Sbjct: 42 PEPTEGFAADDEPTTPAEL--VGKFLGYVSSLVEP--SKVGQFDQVLNLCLTE-----FE 92
Query: 771 SR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTI 829
+ L G DI + + + ++ + RI+ + + N+ L ++
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG-- 150
Query: 830 QEDDPDEKTQL------QSCKFRNHDHKFEWTRDQFNCWATELAARHN-YS------VEF 876
+ QL Q N D FE EL + Y ++F
Sbjct: 151 -----EGNAQLVAIFGGQG----NTDDYFE-----------ELRDLYQTYHVLVGDLIKF 190
Query: 877 SG------VGGSGDREPGFASQIAVFR-----SRTPPEE 904
S + + D E F + + S TP ++
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Score = 33.1 bits (75), Expect = 0.55
Identities = 47/322 (14%), Positives = 91/322 (28%), Gaps = 120/322 (37%)
Query: 428 FYEKSAA----LESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILEC---SPKE--- 477
Y+ S A A DN + FS IL+ +P
Sbjct: 1635 LYKTSKAAQDVWNRA---------------DNHFKDTYGFS-----ILDIVINNPVNLTI 1674
Query: 478 -FYKKQNESI-EN-ASLKVLSWLNAYFKDPDIPLEKLNNLVGALDIQCYPQNFFKKFSSY 534
F ++ + I EN +++ D + EK+ + + +SY
Sbjct: 1675 HFGGEKGKRIRENYSAMIF-----ETIVDGKLKTEKIFKEIN------------EHSTSY 1717
Query: 535 RFIHNVQQRKMGEKLLQANSINTLNAIP-----EHGIY-CLSIGGPDSGIYPSN------ 582
F + LL A T P E + L G+ P++
Sbjct: 1718 TFRSE-------KGLLSA----TQFTQPALTLMEKAAFEDLK----SKGLIPADATFAGH 1762
Query: 583 ------------GCLSFISYSVSLVIE-GETMKELLESREEFEFEMGTGAVIP------- 622
+S V +V G TM+ + E G A+ P
Sbjct: 1763 SLGEYAALASLADVMSI-ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 623 ---QVEVVTAQMSVGQSACFCKE-----LPPQELILA----AADDSARTFSLLSSKDRME 670
++ V ++ ++ E + Q+ + A A D + + +
Sbjct: 1822 SQEALQYVVERVG-KRTGWLV-EIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ---- 1875
Query: 671 QALFSPPLSKQRVEYALQHIKE 692
+ + + +L+ ++
Sbjct: 1876 ----KIDIIELQKSLSLEEVEG 1893
Score = 33.1 bits (75), Expect = 0.59
Identities = 32/218 (14%), Positives = 63/218 (28%), Gaps = 76/218 (34%)
Query: 1 MENGGLSVVAVRKMKLTPKAIIVQKFGRNAQ--------FTVDEVQDVVQNGCPGL--AI 50
+ G S++ + + P + + G + + + D G
Sbjct: 1654 KDTYGFSILDI--VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD----GKLKTEKIF 1707
Query: 51 PQKGPCLYRCS-------LQLPEFS-----VVSETFKKKKDAEQSAAEKALEKLGIDPSP 98
+ + L +F+ ++ AA + L+ G+ P+
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFTQPALTLME-----------KAAFEDLKSKGLIPAD 1756
Query: 99 NVP--------SAEEAWDKL--IASVKHLFSNEFLSSQSPL---RGHFIA-ALRRD---G 141
+A L +A V S + S + RG + A+ RD
Sbjct: 1757 ATFAGHSLGEYAA------LASLADV---MS---IESLVEVVFYRGMTMQVAVPRDELGR 1804
Query: 142 DLYGSV---PASVIAV-CDSKLANLCKLINPK----VE 171
YG + P V A L + + + + VE
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE 1842
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 4e-10
Identities = 87/646 (13%), Positives = 181/646 (28%), Gaps = 215/646 (33%)
Query: 254 YLDVIARNLDQ---TDGNKILVSRT-----IGKASSEMRLYFAAPKSYLLDLSSDLPNVE 305
+ D N D D K ++S+ I + L E
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL------RLFWTLLSKQ--E 76
Query: 306 EVVD--FEGSLNPRASYLYG--QDIYGDAILASIGYTRKSEGLFHEDITLQSYY------ 355
E+V E L +L + + + Y + + L++++ Y
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 356 -----RMLIHLTPSG---VY------K--LSREAILTAELPMAFTTRTNW----RGSFPR 395
+ L+ L P+ + K ++ + L+ ++ + W + P
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 396 EMLFM---FCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKEC------TS 446
+L M Q + S +S + L ++ + C
Sbjct: 197 TVLEMLQKLLYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 447 GGGTAASDNVRCEVKIFSKSRD--------------PILECSPKEFYKKQNESIENASLK 492
+ N+ C KI +R L+ + +S+
Sbjct: 255 NAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL------ 306
Query: 493 VLSWLNAYFKDPDIPLEKLN------NLVGALDIQCYPQNFFKKFSSYRFIHNVQQRKMG 546
+L +L+ + D+P E L +++ ++ + +++ +V K+
Sbjct: 307 LLKYLDC--RPQDLPREVLTTNPRRLSIIAESI-----RDGLATWDNWK---HVNCDKL- 355
Query: 547 EKLLQANSINTLNAIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLE 606
++++ S+N L ++ ++P + + I + L + +
Sbjct: 356 TTIIES-SLNVLEPAEYRKMF------DRLSVFPPS---AHIPTIL-LSL-------IWF 397
Query: 607 SREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILAAADDSARTFSL---- 662
+ + V VV ++ S L T S+
Sbjct: 398 DVIKSD-----------VMVVVNKL-HKYS-------------LVEKQPKESTISIPSIY 432
Query: 663 --LSSKDRMEQAL------------------FSPPLSKQRVEYALQHI-----------K 691
L K E AL PP Q Y HI +
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ---YFYSHIGHHLKNIEHPER 489
Query: 692 ESCATTL-VDFG-------------CGSGSLLDSLLD---Y--------PTALEKIVGVD 726
+ + +DF SGS+L++L Y P E++V
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK-YERLVN-A 547
Query: 727 ISQKSLSRAAKIIHSKLSKKLDAAVPCTD-VKSAVLFDGSITVFDS 771
I +I S TD ++ A++ + ++
Sbjct: 548 ILDFLPKIEENLICS----------KYTDLLRIALMAEDEAIFEEA 583
Score = 49.5 bits (117), Expect = 6e-06
Identities = 78/547 (14%), Positives = 153/547 (27%), Gaps = 180/547 (32%)
Query: 465 KSRDPILECSPKEFYKKQN-ESIENASLKVLSWLNAYFKD----PDIPLEKLNNLVGALD 519
+ +D IL F + + +++ +LS D + L L
Sbjct: 17 QYKD-ILSVFEDAFVDNFDCKDVQDMPKSILS--KEEIDHIIMSKD-AVSGTLRLFWTLL 72
Query: 520 IQCYPQNFFKKF------SSYRFIHNVQQRKMGEKLLQANSINTLNAIPEHGIYCLSIGG 573
+ + +KF +Y+F+ + I T P
Sbjct: 73 SK--QEEMVQKFVEEVLRINYKFL--------------MSPIKTEQRQPS---------- 106
Query: 574 PDSGIYPS------NGCLSFISYSVSLVIEGETMKE-LLESREEFEFEMGTGAVIPQVEV 626
+ +Y N F Y+VS + +++ LLE R P V
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR-------------PAKNV 153
Query: 627 VTAQMS-VGQSACFCKELPPQELILAAADDSARTFSLLSSKDRMEQALFSPPLSK-QRVE 684
+ + G++ +A D ++ + + +M+ +F L E
Sbjct: 154 LIDGVLGSGKT------------WVAL--DVCLSYKV---QCKMDFKIFWLNLKNCNSPE 196
Query: 685 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLS 744
L+ ++ L S D + + I Q L R ++ SK
Sbjct: 197 TVLEMLQ----KLLYQIDPNWTSRSDHSSNIKLRIHSI------QAELRR---LLKSKPY 243
Query: 745 KK----LDAAVPCTDVKSA-VL--FDGS----ITVFDSRLHGFDI----GTCLEVIEH-- 787
+ L +V++A F+ S +T ++ D T ++H
Sbjct: 244 ENCLLVLL------NVQNAKAWNAFNLSCKILLTTRFKQV--TDFLSAATTTHISLDHHS 295
Query: 788 --MEEDEA----SQFGNIVLSSFRPRILIVSTP---------------------NYEYNA 820
+ DE ++ + +L + P + +
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 821 ILQKSSSTIQEDDPDE-KTQLQSCK-FRNHDH------KFEWTRDQFNCWATELAARHNY 872
+ S++ +P E + F H W + + H Y
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 873 S-VEFSGVGGSGDREPGFASQIAV----FRSRTPPEEDDLLKDGDSAH-----HYKVIWE 922
S VE + S I++ + E + L H HY +
Sbjct: 415 SLVE-------KQPKE---STISIPSIYLELKVKLENEYAL------HRSIVDHYNIPKT 458
Query: 923 WDGNGLS 929
+D + L
Sbjct: 459 FDSDDLI 465
Score = 44.5 bits (104), Expect = 2e-04
Identities = 60/396 (15%), Positives = 120/396 (30%), Gaps = 95/396 (23%)
Query: 19 KAIIVQKFGRNAQFTVDEVQD--VVQ---NGCPGLAIPQ-KGPCLYRCSLQLPEFSVV-- 70
+ ++ K N + VQ+ C L + K + + S+
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 71 SETFKKKKDAEQSAAEKALEK-LGIDPSPNVPSAEEAWDKLIASVKHLFSNEFLSSQSPL 129
S T + + L K L P ++P E + +P
Sbjct: 295 SMTLTPDE------VKSLLLKYLDCRPQ-DLP--REV-----------------LTTNPR 328
Query: 130 RGHFIAALRRDG----DLYGSVPAS-VIAVCDSKLANLCKLINPKVESSHLLVLTYIMRA 184
R IA RDG D + V + + +S L L P L+ +
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL----EPAEYRKMFDRLS-VFPP 383
Query: 185 ATRLSEFVVTSEGQLSI-WRKDPY--PPEI----KESSIIQQSESPDSICIEAIHI---- 233
+ + + LS+ W + + S++++ +I I +I++
Sbjct: 384 SAHIPTIL------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 234 PSSLEMAVHPVTLNVSSTGYYLDVIARNLDQTDGNKILVSR----TIG---KASSEMRLY 286
E A+H ++ +Y I + D D + + IG K
Sbjct: 438 KLENEYALHRSIVD-----HY--NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 287 FAAPKSYLLDLSSDLPNVEEVVDFEGSLNPRASYLYG--QDI--YGDAILASIG-YTRKS 341
+L D +E+ + + + + + Q + Y I + Y R
Sbjct: 491 TLFRMVFL-----DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 342 EGL--F---HEDITLQSYYRMLIHL---TP-SGVYK 368
+ F E+ + S Y L+ + +++
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 30.6 bits (68), Expect = 3.6
Identities = 24/157 (15%), Positives = 49/157 (31%), Gaps = 52/157 (33%)
Query: 776 FDIG----TCLEVIEHMEEDEASQFG-NIVLSSFRPRIL-------IVSTPNYE------ 817
F+ G +++ E+ F V + IL I+ + +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS-ILSKEEIDHIIMSKDAVSGTLRL 67
Query: 818 YNAILQKSSSTIQE-----DDPDEK---TQLQS-CKFRNHDHK-FEWTRDQ-FNC----- 861
+ +L K +Q+ + K + +++ + + + + RD+ +N
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 862 ---------------WATELAARHNYSVEFSGVGGSG 883
EL R +V GV GSG
Sbjct: 128 KYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSG 162
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 58.4 bits (141), Expect = 2e-09
Identities = 21/140 (15%), Positives = 48/140 (34%), Gaps = 24/140 (17%)
Query: 680 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKII 739
K R+ + + K ++D GCG G L+ + + +GVDI++ +
Sbjct: 29 KARLRRYIPYFKGC--RRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGKF 83
Query: 740 HSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNI 799
+ S ++ D D +EH++ + + ++
Sbjct: 84 NVVKSDAIEYLKSLPDKY------------------LDGVMISHFVEHLDPERLFELLSL 125
Query: 800 VLSSFRPR-ILIVSTPNYEY 818
S + +++ +PN
Sbjct: 126 CYSKMKYSSYIVIESPNPTS 145
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 58.3 bits (141), Expect = 2e-09
Identities = 26/185 (14%), Positives = 50/185 (27%), Gaps = 41/185 (22%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756
L++ G G L ++ I V+ S++ A +L + +
Sbjct: 45 NLLELGSFKGDFTSRLQEHFN---DITCVEASEE----AISHAQGRLKDGIT--YIHSRF 95
Query: 757 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRIL------I 810
+ A +D V+EH+++ A +L L
Sbjct: 96 EDA-QLPRR----------YDNIVLTHVLEHIDDPVA------LLKRINDDWLAEGGRLF 138
Query: 811 VSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARH 870
+ PN + I + + H H+ + D A+R
Sbjct: 139 LVCPNANAVSRQIAVKMGIISHNS-----AVTEAEFAHGHRCTYALDTL----ERDASRA 189
Query: 871 NYSVE 875
V
Sbjct: 190 GLQVT 194
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 56.3 bits (136), Expect = 7e-09
Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 36/145 (24%)
Query: 687 LQHIKESCATTLVDFGCGSGSLLDSL--LDYPTALEKIVGVDISQKSLSRAAKIIHSKLS 744
L+HIK+ L D GC SG+L ++ ++ G++ ++ +A +
Sbjct: 26 LKHIKKEWKEVL-DIGCSSGALGAAIKENGT-----RVSGIEAFPEAAEQAKE------- 72
Query: 745 KKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSF 804
K + + + FD +V+EH+ + A V+
Sbjct: 73 KLDHVVLGDIETMDMPYEEEQ----------FDCVIFGDVLEHLFDPWA------VIEKV 116
Query: 805 RPR-----ILIVSTPNYEYNAILQK 824
+P +++ S PN + ++L
Sbjct: 117 KPYIKQNGVILASIPNVSHISVLAP 141
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 50.2 bits (121), Expect = 1e-06
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
VE AL+ I++ T+ D G GSG++ S+ + A + D+S K++ A K
Sbjct: 112 VELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDA--IVFATDVSSKAVEIARK 164
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 48.6 bits (116), Expect = 3e-06
Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 19/131 (14%)
Query: 696 TTLVDFGCGSGSLLDSLLD-YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 754
++D G G+G L L++ YP A VD+S+K L A + L
Sbjct: 46 PDILDLGAGTGLLSAFLMEKYPEA--TFTLVDMSEKMLEIAKN----RFRGNLKVKYIEA 99
Query: 755 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813
D S F+ +D+ I H+E+++ + S + I I +
Sbjct: 100 DY-SKYDFEEK----------YDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINAD 148
Query: 814 PNYEYNAILQK 824
+ A ++
Sbjct: 149 LVHGETAFIEN 159
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 47.3 bits (112), Expect = 1e-05
Identities = 36/208 (17%), Positives = 73/208 (35%), Gaps = 24/208 (11%)
Query: 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLD--YPTALEKIVGVDISQKSLSRAAKIIH 740
+ L +++ ++D CG+G L++ + + VD S K L A K
Sbjct: 46 KAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-----SVTSVDASDKMLKYALK--- 97
Query: 741 SKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCL-EVIEHMEEDEASQFGNI 799
+ +++ + A ++ A V GFD CL H+ + + Q +
Sbjct: 98 ERWNRRKEPAFDKWVIEEANWLTLDKDVPAGD--GFDAVICLGNSFAHLPDSKGDQSEHR 155
Query: 800 -VLSSF----RPR-ILIVSTPNYEY-----NAILQKSSSTIQEDDPDEKTQLQSCKFRNH 848
L + RP +L++ NY+Y A K+ + D T + + + H
Sbjct: 156 LALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAH 215
Query: 849 DHKFEWTRDQFNCWATELAARHNYSVEF 876
++T + + +
Sbjct: 216 MVTLDYTVQVPGAGRDGAPGFSKFRLSY 243
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 43.5 bits (103), Expect = 6e-05
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 30/132 (22%)
Query: 678 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
+S +R E L +I E +VD+GCG+G LL++ K+ +DI+ +L
Sbjct: 1 MSLERPEEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEF---ATKLYCIDINVIALKEVK- 56
Query: 738 IIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFG 797
+K D+ + T + D S D M++ +
Sbjct: 57 -------EKFDSVI--TLSDPKEIPDNS----------VDFILFANSFHDMDDKQH---- 93
Query: 798 NIVLSSFRPRIL 809
V+S + RIL
Sbjct: 94 --VISEVK-RIL 102
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: d.50.1.1
Length = 89
Score = 41.6 bits (98), Expect = 6e-05
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 22/66 (33%)
Query: 62 LQLPEFSVVSE-------TF---------------KKKKDAEQSAAEKALEKLGIDPSPN 99
+ P++ ++SE F KK A+++AAE L +LG S +
Sbjct: 21 EKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTS 80
Query: 100 VPSAEE 105
+ +
Sbjct: 81 LQDSGP 86
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 44.3 bits (104), Expect = 7e-05
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 18/93 (19%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756
L+DF CG+G+ L + +++G+D+S+ +L AAK + A +
Sbjct: 59 PLIDFACGNGTQTKFLSQF---FPRVIGLDVSKSALEIAAK-------ENTAANI----- 103
Query: 757 KSAVLFDGSITVFDSRLHG--FDIGTCLEVIEH 787
S L DG + +++H D + H
Sbjct: 104 -SYRLLDGLVPEQAAQIHSEIGDANIYMRTGFH 135
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 44.4 bits (106), Expect = 9e-05
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAK 737
VE AL + E ++D G G+G++ +L P +I+ VD ++S A +
Sbjct: 99 VEQALARLPEQ-PCRILDLGTGTGAIALALASERPDC--EIIAVDRMPDAVSLAQR 151
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 43.8 bits (103), Expect = 1e-04
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 643 LPPQELILAAADDSARTFSLLSSKDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFG 702
LP Q DSA ++ A PL V + + + AT ++D G
Sbjct: 38 LPVQHKRSRDPGDSAEMMQ---ARRAFLDAGHYQPLRDAIVAQLRERLDDK-ATAVLDIG 93
Query: 703 CGSGSLLDSLLD-YPTALEKIVGVDISQKSLSRAAK 737
CG G + D P G+D+S+ ++ AAK
Sbjct: 94 CGEGYYTHAFADALPEI--TTFGLDVSKVAIKAAAK 127
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 43.0 bits (101), Expect = 2e-04
Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 29/188 (15%)
Query: 700 DFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759
D CG G L DY ++VGVDIS+ + +A + ++K S++ + D +
Sbjct: 44 DLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKARE--YAK-SRESNVEFIVGDARKL 97
Query: 760 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQ-FGNI--VLSSFRP--RILIVSTP 814
D + FD ++ I H E E +Q F + VL +P + ++ T
Sbjct: 98 SFEDKT----------FDYVIFIDSIVHFEPLELNQVFKEVRRVL---KPSGKFIMYFTD 144
Query: 815 NYEYNAILQKSSSTIQED-----DPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAAR 869
E L++S Q+ PD++ + +F++ F + + EL A+
Sbjct: 145 LRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAK 204
Query: 870 HNYSVEFS 877
++ E
Sbjct: 205 LYFTKEAE 212
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant
protein; NMR {Arabidopsis thaliana}
Length = 103
Score = 40.6 bits (95), Expect = 2e-04
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 58 YRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGIDPSPN 99
L ++ + F +K AEQSAAE AL +L +
Sbjct: 52 STVILDGVRYNSLP-GFFNRKAAEQSAAEVALRELAKSSELS 92
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene
regulation, NUCL protein, gene regulation,nuclear
protein; NMR {Homo sapiens}
Length = 85
Score = 39.6 bits (93), Expect = 2e-04
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 77 KKDAEQSAAEKALEKLGI 94
+ AE AA ALEK
Sbjct: 59 IQQAEMGAAMDALEKYNF 76
>2l33_A Interleukin enhancer-binding factor 3; structural genomics,
northeast structural genomics consortiu PSI-biology,
protein structure initiative, DRBM; NMR {Homo sapiens}
Length = 91
Score = 39.7 bits (93), Expect = 3e-04
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 75 KKKKDAEQSAAEKALEKLGIDPSPNVPSAEE 105
KK A+ AA ALEKL D P A +
Sbjct: 62 SNKKVAKAYAALAALEKLFPDT-PLALDANK 91
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.50.1.1
Length = 97
Score = 39.8 bits (93), Expect = 4e-04
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 75 KKKKDAEQSAAEKALEKLGIDPSPNVPSAEEA 106
KK A+ A K L+ +G P A+ +
Sbjct: 64 PSKKTAKLHVAVKVLQAMGY---PTGFDADIS 92
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 42.2 bits (99), Expect = 4e-04
Identities = 14/99 (14%), Positives = 37/99 (37%), Gaps = 21/99 (21%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP--CT 754
T++D GCG G ++ K++G+D+S++ L+ A + K V
Sbjct: 47 TVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKR-------KTTSPVVCYEQK 97
Query: 755 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA 793
++ + + +++ + ++ +
Sbjct: 98 AIEDIAIEPDA----------YNVVLSSLALHYIASFDD 126
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 42.1 bits (99), Expect = 4e-04
Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 26/133 (19%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756
+VD GCG G ++ + ++G+D+S+K L+RA D+
Sbjct: 46 RIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARAR-----AAGPDTGITYERADL 98
Query: 757 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE-----DEASQF----GNIVLSSFRPR 807
L S FD+ + ++E+ Q G+ V S+ P
Sbjct: 99 DKLHLPQDS----------FDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPI 148
Query: 808 ILIVSTPNYEYNA 820
+ + P + +A
Sbjct: 149 YMAPARPGWAIDA 161
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 41.4 bits (97), Expect = 5e-04
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 16/115 (13%)
Query: 683 VEYALQHIKESCATTLV-DFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 741
+ L++ ES V D G G S+ K G++IS L +A S
Sbjct: 11 LYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGY--KTYGIEISDLQLKKAEN--FS 66
Query: 742 KLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQF 796
+ + D++ D S I HM +++ +
Sbjct: 67 R-ENNFKLNISKGDIRKLPFKDES----------MSFVYSYGTIFHMRKNDVKEA 110
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 41.6 bits (98), Expect = 6e-04
Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 24/194 (12%)
Query: 672 ALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLD-YPTALEKIVGVDISQK 730
L + V + L+ ++ + D GCG+G+ L D Y ++ GVD+S++
Sbjct: 13 ELMQDVPYPEWVAWVLEQVEP--GKRIADIGCGTGTATLLLADHY-----EVTGVDLSEE 65
Query: 731 SLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL---FDGSITVFDSRLHGF---DIGTCL-E 783
L A + + D++ L D + DS + D+
Sbjct: 66 MLEIAQE---KAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDS 122
Query: 784 VIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQED-DPDEKTQLQS 842
+ + G ++ P + Y ++SS D + + +
Sbjct: 123 AARLLTDG-----GKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHE 177
Query: 843 CKFRNHDHKFEWTR 856
F + R
Sbjct: 178 LTFFIEGEDGRYDR 191
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding
protein, gene regulation; 1.70A {Arabidopsis thaliana}
PDB: 3adi_A
Length = 73
Score = 38.4 bits (90), Expect = 6e-04
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 73 TFKKKKDAEQSAAEKALEKLG 93
F +K AEQSAAE AL +L
Sbjct: 52 GFFNRKAAEQSAAEVALRELA 72
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 41.0 bits (96), Expect = 7e-04
Identities = 18/118 (15%), Positives = 45/118 (38%), Gaps = 20/118 (16%)
Query: 700 DFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759
+ GC +G+ + L + +++ +D+ +++ RA + +K + A TD+
Sbjct: 57 EIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQ--RTKRWSHISWA--ATDI-LQ 108
Query: 760 VLFDGSITVFDSRLHGFDIGTCLEVIEHME-EDEASQFGNIVLSSFRPR-ILIVSTPN 815
FD+ EV+ ++E + + ++ P L+ +
Sbjct: 109 FSTAEL----------FDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 41.0 bits (97), Expect = 8e-04
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 683 VEYALQHIKES-CATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAK 737
VE A++ +K T ++D G GSG + S+ P + VD+S +L+ A +
Sbjct: 18 VEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGV--SVTAVDLSMDALAVARR 72
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 41.2 bits (96), Expect = 8e-04
Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 15/154 (9%)
Query: 699 VDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 758
+D G G G + LL ++ VDI++ L +A + + + + C ++
Sbjct: 84 LDCGAGIGRITKRLLLP--LFREVDMVDITEDFLVQAKTYLGEEGKRVRNYF--CCGLQD 139
Query: 759 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 817
S +D+ VI H+ + ++F S RP I+++ +
Sbjct: 140 FTPEPDS----------YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQ 189
Query: 818 YNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHK 851
IL S++ D + + S +
Sbjct: 190 EGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 223
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding
protein, hydrolase; NMR {Rattus norvegicus} SCOP:
d.50.1.1 PDB: 2l3c_A
Length = 73
Score = 37.6 bits (88), Expect = 9e-04
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 8/40 (20%)
Query: 65 PEFSVV----SETF----KKKKDAEQSAAEKALEKLGIDP 96
P F + + F KK A+ AAEKAL P
Sbjct: 34 PLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFP 73
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein,
gene regulation; 3.00A {Arabidopsis thaliana} PDB:
2l2m_A
Length = 76
Score = 37.7 bits (88), Expect = 0.001
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 57 LYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92
+ C++++ + KKDAE SA AL +
Sbjct: 37 QFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAI 72
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 40.6 bits (95), Expect = 0.001
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 687 LQHIKESCATTLVDFGCGSGSLLDSLLD-YPTALEKIVGVDISQKSLSRAAK 737
L + D GCG G+ + L D Y I G+D L +AA
Sbjct: 26 LAQVPLERVLNGYDLGCGPGNSTELLTDRYGVN--VITGIDSDDDMLEKAAD 75
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA
binding domain, DSRBD, DSRM, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.50.1.1
Length = 128
Score = 38.8 bits (90), Expect = 0.002
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 50 IPQKGPCLYRCSLQLPEFSVVSETFKK-KKDAEQSAAEKALEKLGI 94
+ + ++ + + E S + K KK AEQ+AA L G+
Sbjct: 49 VQRTIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGL 94
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 40.3 bits (94), Expect = 0.002
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 14/97 (14%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756
+VD+GCG G L L+ K G+D + L+ A ++ D+ D
Sbjct: 25 HIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFR---LLPYDSEFLEGDA 81
Query: 757 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA 793
+ + + +DI C + HM E
Sbjct: 82 -TEIELNDK----------YDIAICHAFLLHMTTPET 107
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 40.2 bits (94), Expect = 0.002
Identities = 30/196 (15%), Positives = 62/196 (31%), Gaps = 31/196 (15%)
Query: 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLD--YPTALEKIVGVDISQKSLSRAAKIIH 740
VE + + ++D CG+G L + Y ++VG+D+ ++ L A +
Sbjct: 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-----EVVGLDLHEEMLRVARRKAK 84
Query: 741 SKLSKKLDAAVPCTDVKSAVL---FDGSITVFDSRLHGF---DIGTCLE----------- 783
+ L DV FD F + ++ F D+
Sbjct: 85 ---ERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMY-FDEEDLRKLFSKVAEALKPGGV 140
Query: 784 -VIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSST--IQEDDPDEKTQL 840
+ + + G +V + + +V E +QK +Q P+ + +
Sbjct: 141 FITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGEVKA 200
Query: 841 QSCKFRNHDHKFEWTR 856
+ + R
Sbjct: 201 FLVDDELNIYTPREVR 216
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing,
hydrolase; NMR {Drosophila melanogaster}
Length = 114
Score = 38.0 bits (88), Expect = 0.002
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 77 KKDAEQSAAEKALEKLGIDPSPNVPSAEE 105
KK A AA AL V S +
Sbjct: 84 KKVARIEAAATALRSFIQFKDGAVLSPLK 112
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing,
gene regulation-RNA complex; 2.20A {Homo sapiens}
Length = 88
Score = 37.3 bits (87), Expect = 0.002
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 22/57 (38%)
Query: 62 LQLPEFSVVSE-------TF---------------KKKKDAEQSAAEKALEKLGIDP 96
+LPE++V E F KK A+++AA K L ++ P
Sbjct: 30 WRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVP 86
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics,
PSI-biology, protein structure initiati northeast
structural genomics consortium, NESG; 1.90A {Homo
sapiens}
Length = 75
Score = 36.5 bits (85), Expect = 0.003
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 77 KKDAEQSAAEKALEKLGIDPSPNVP 101
KK A+ AA ALEKL P+ P
Sbjct: 54 KKVAKAYAALAALEKL----FPDTP 74
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 39.6 bits (92), Expect = 0.003
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756
LVD GCG G+ + E+I+G D+S + A I + + +
Sbjct: 39 LLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS 98
Query: 757 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA 793
F G+ +V D+ T +E + ++
Sbjct: 99 DD-FKFLGADSVDK---QKIDMITAVECAHWFDFEKF 131
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA
complex, protein-RNA interactions, RNA-bining protein;
1.90A {Xenopus laevis} SCOP: d.50.1.1
Length = 69
Score = 36.0 bits (84), Expect = 0.003
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 22/53 (41%)
Query: 62 LQLPEFSVVSE-------TF---------------KKKKDAEQSAAEKALEKL 92
+LPE++V E F K+ A++ AAEK L K
Sbjct: 15 WRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAEKLLTKF 67
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain,
DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: d.50.1.1
Length = 89
Score = 36.5 bits (85), Expect = 0.004
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 22/54 (40%)
Query: 62 LQLPEFSVVSE-------TF---------------KKKKDAEQSAAEKALEKLG 93
+LPE++V E F KK A+++AA K L ++
Sbjct: 31 WRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVS 84
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA
binding protein; 2.14A {Homo sapiens}
Length = 90
Score = 36.5 bits (85), Expect = 0.004
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 77 KKDAEQSAAEKALEKLGIDPSP 98
KK A+ AAE AL+ L
Sbjct: 65 KKAAKHKAAEVALKHLKGGSML 86
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 39.1 bits (91), Expect = 0.004
Identities = 35/237 (14%), Positives = 74/237 (31%), Gaps = 41/237 (17%)
Query: 654 DDSARTFSLLSSK-DRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSL 712
+ + + + + ++ Q ++ + + Q++K+ ++D GCG G L
Sbjct: 14 ESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEA--EVLDVGCGDGYGTYKL 71
Query: 713 LDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 772
K VGVDIS+ + + + + D + D+ S +
Sbjct: 72 SRTG---YKAVGVDISEVMIQKGK-----ERGEGPDLSFIKGDLSSLPFENEQ------- 116
Query: 773 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRIL------IVSTPNYEYNAILQK-- 824
F+ + +E EE L+ + R+L ++
Sbjct: 117 ---FEAIMAINSLEWTEEPLR------ALNEIK-RVLKSDGYACIAILGPTAKPRENSYP 166
Query: 825 ----SSSTIQEDDPDEKTQ-LQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEF 876
P E Q ++ F+ D + R +L+ S+ F
Sbjct: 167 RLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVYKRGVNEKMLGQLSTDLQQSLTF 223
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 39.4 bits (91), Expect = 0.004
Identities = 22/174 (12%), Positives = 59/174 (33%), Gaps = 8/174 (4%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756
++ G+G+ L+ A +V D +++R + + S +
Sbjct: 51 KVLAIDFGNGADLEKYFYGEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYI 108
Query: 757 KSAVLFDGSITVFDSRLH--GFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPRILIVS 812
+ + D ++ + F+I I + A+ N+ + ++++
Sbjct: 109 QETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLIT 168
Query: 813 TPN-YEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATE 865
T + + + + K + I ++ P + + K D + + TE
Sbjct: 169 TMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKI-ADDRIVVYNPSTMSTPMTE 221
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM,
riken structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Mus musculus} SCOP: d.50.1.1
PDB: 2rs6_A
Length = 99
Score = 36.4 bits (84), Expect = 0.005
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 58 YRCSLQLPEFSVVSE-TFKKKKDAEQSAAEKALEKL---GIDPSPNVPS 102
+ C +++ F+ KKDA+ +AA + L S VP+
Sbjct: 38 FMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINEVKSEEVPA 86
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure,
protein/RNA, protein DSRBD, RNA hairpin; NMR
{Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Length = 76
Score = 35.8 bits (83), Expect = 0.005
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 75 KKKKDAEQSAAEKALEKL 92
KK +++ AAEK L +L
Sbjct: 56 NGKKVSKKRAAEKMLVEL 73
>1x49_A Interferon-induced, double-stranded RNA- activated protein
kinase; structure genomics, DSRM domain, structural
genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Length = 97
Score = 36.2 bits (84), Expect = 0.006
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 75 KKKKDAEQSAAEKALEKL 92
+ K++A +AA+ A++ L
Sbjct: 64 RSKQEARNAAAKLAVDIL 81
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 38.8 bits (89), Expect = 0.006
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 3/99 (3%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKL-DAAVPCTD 755
T++D GCG G L K+V DI+ S+ + + +++ +
Sbjct: 37 TVLDLGCGKGGDLLKWKKGRIN--KLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEF 94
Query: 756 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEAS 794
+ + + I F FDI +C V + E
Sbjct: 95 ITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQ 133
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 38.7 bits (90), Expect = 0.006
Identities = 30/188 (15%), Positives = 56/188 (29%), Gaps = 31/188 (16%)
Query: 680 KQRVEYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
+ ++ A +L+D CG+G L L D + + G+++S L+ A +
Sbjct: 34 HREAADLAALVRRHSPKAASLLDVACGTGMHLRHLAD---SFGTVEGLELSADMLAIARR 90
Query: 738 IIHSKLSKKLDAAVPCTDVKSAVL---FDGSITVFDSRLHGF---DIGTCLE-------- 783
+ DA + D++ L F +F S H ++ LE
Sbjct: 91 -------RNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLP 143
Query: 784 ----VIEHMEEDEASQFGNIVLSSFR-PRILIVSTPNYEYNAILQKSSSTIQEDDPDEKT 838
V+E E G + + + + + PD
Sbjct: 144 DGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGI 203
Query: 839 QLQSCKFR 846
R
Sbjct: 204 THHEESHR 211
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 38.5 bits (89), Expect = 0.006
Identities = 11/110 (10%), Positives = 31/110 (28%), Gaps = 16/110 (14%)
Query: 687 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK 746
+ + + +D G G G + +LL ++ + L A +
Sbjct: 86 IASLPGHGTSRALDCGAGIGRITKNLLT--KLYATTDLLEPVKHMLEEAKRE-------- 135
Query: 747 LDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQF 796
+ S+ + +D+ ++ + + +F
Sbjct: 136 ------LAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKF 179
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 38.5 bits (89), Expect = 0.007
Identities = 32/219 (14%), Positives = 76/219 (34%), Gaps = 34/219 (15%)
Query: 700 DFGCGSGSLLDSLLD-----YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 754
G G+G + +L YP V+ S + +++ +++ +K S +
Sbjct: 58 SIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELV-AKTSNLENVKFAWH 116
Query: 755 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR------- 807
S+ + + +D ++++ ++++ A+ L F
Sbjct: 117 KETSSEYQSRMLEKKEL--QKWDFIHMIQMLYYVKDIPAT------LKFFHSLLGTNAKM 168
Query: 808 ILIVSTPNYEYNAILQKSSSTIQEDDPDE---KTQLQSCKFRNHDHKFEWTRDQFNCWAT 864
++IV + + ++ + +K S +DD + L N K+E +
Sbjct: 169 LIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQM-LDNLGLKYECYDLLSTMDIS 227
Query: 865 ELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRTPPE 903
+ N +GD F ++ F + PP+
Sbjct: 228 DCFIDGNE---------NGDLLWDFLTETCNFNATAPPD 257
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 38.3 bits (89), Expect = 0.007
Identities = 14/118 (11%), Positives = 38/118 (32%), Gaps = 17/118 (14%)
Query: 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRA- 735
P + ++ + + + + D GCG+G L DY +I G+D+ +
Sbjct: 31 PEATRKAVSFINELTDD--AKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFN 86
Query: 736 AKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA 793
+ + + ++ + + + D+ I ++ +
Sbjct: 87 ENAVKANCADRVK--GITGSMDNLPFQNEE----------LDLIWSEGAIYNIGFERG 132
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure,
transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Length = 179
Score = 37.6 bits (87), Expect = 0.007
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 75 KKKKDAEQSAAEKALEKLGIDPSPNV 100
K++A+Q AA+ A ++ + + +
Sbjct: 153 STKQEAKQLAAKLAYLQILSEETGSG 178
Score = 36.4 bits (84), Expect = 0.019
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 50 IPQKGP---CLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGIDPSPN 99
+P GP + + + + KK+A+ +AA+ A+E L +
Sbjct: 35 LPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAV 87
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 38.4 bits (89), Expect = 0.007
Identities = 22/185 (11%), Positives = 47/185 (25%), Gaps = 22/185 (11%)
Query: 672 ALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLD--YPTALEKIVGVDISQ 729
L L + G G L LD + ++ +++S
Sbjct: 61 DLIQDADGTSEAREFATRTGPVSGPVL-ELAAGMGRLTFPFLDLGW-----EVTALELST 114
Query: 730 KSLSRA-AKIIHSKLSKKLDAAVPCTDVKSAVL---FDGSITVFDSRLHGF---DIGTCL 782
L+ ++ + + + D+ + L F + S ++ D
Sbjct: 115 SVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGS-INELDEADRRGLY 173
Query: 783 -EVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQ 841
V EH+E G +LS + + + ++Q
Sbjct: 174 ASVREHLEPG-----GKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQ 228
Query: 842 SCKFR 846
Sbjct: 229 EITIH 233
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding
protein, hydrolase; NMR {Rattus norvegicus} SCOP:
d.50.1.1 PDB: 2l2k_B
Length = 71
Score = 34.9 bits (81), Expect = 0.008
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 75 KKKKDAEQSAAEKALEKL 92
+ KK A+ AA+ AL +
Sbjct: 49 RNKKLAKARAAQSALATV 66
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 38.2 bits (89), Expect = 0.008
Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 25/171 (14%)
Query: 680 KQRVEYALQHIKE--SCATTLVDFGCGSGSLLDSLLD--YPTALEKIVGVDISQKSLSRA 735
K+ ++ ++ E +D CG+G+L ++L VD+SQ+ LS A
Sbjct: 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK-----NTWAVDLSQEMLSEA 75
Query: 736 AKIIHSKLSKKLDAAVPCTDVKSAVL---FDGSITVFDSRLHGF---DIGTCLEVI-EHM 788
S+ L + C D+ + + FD DS + D+ + + H+
Sbjct: 76 EN---KFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHL 132
Query: 789 EEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQ 839
+E G + L N ++N E+ ++
Sbjct: 133 KEG-----GVFIFDINSYYKLSQVLGNNDFNYD-DDEVFYYWENQFEDDLV 177
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic
protein structure initiative; 2.10A {Mycobacterium
tuberculosis}
Length = 242
Score = 38.0 bits (89), Expect = 0.009
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 77 KKDAEQSAAEKALEKLGI--DPSPNVPSA 103
KK+AEQ AA A + L + + P SA
Sbjct: 214 KKEAEQKAAAAAWKALEVLDNAMPGKTSA 242
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 37.5 bits (87), Expect = 0.010
Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 17/125 (13%)
Query: 667 DRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVD 726
D + + LF+P + E + + T + D G G G+L +L I +D
Sbjct: 18 DEISKTLFAP-IYPIIAENIINRFGITAGTCI-DIGSGPGALSIALAKQSDF--SIRALD 73
Query: 727 ISQKSLSRA-AKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVI 785
S+ A I + L+ ++ + DV + + D D+ +
Sbjct: 74 FSKHMNEIALKNIADANLNDRIQ--IVQGDVHNIPIEDNY----------ADLIVSRGSV 121
Query: 786 EHMEE 790
E+
Sbjct: 122 FFWED 126
>2dix_A Interferon-inducible double stranded RNA- dependent protein
kinase activator A; structure genomics, DSRM domain,
hypothetical protein PRKRA; NMR {Homo sapiens} SCOP:
d.50.1.1
Length = 84
Score = 35.0 bits (81), Expect = 0.011
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 77 KKDAEQSAAEKALEKL 92
KK A+ AAE A+ L
Sbjct: 59 KKLAKHRAAEAAINIL 74
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 38.0 bits (88), Expect = 0.011
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 697 TLVDFGCGSGSLLDSLLD-YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 755
+++ GCG G+ L P A +I +DIS +SL +A + +
Sbjct: 40 KVLEAGCGIGAQTVILAKNNPDA--EITSIDISPESLEKARE-------NTEKNGIKNVK 90
Query: 756 VKSAVLF-----DGSITVFDSRLHGFDIGTCLEVIEHMEE 790
A +F D S FD V+EH++
Sbjct: 91 FLQANIFSLPFEDSS----------FDHIFVCFVLEHLQS 120
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 37.5 bits (87), Expect = 0.012
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 26/97 (26%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756
V+ G G+G L+ +GV+ S++ A K + + V
Sbjct: 50 RGVEIGVGTGRFAV-------PLKIKIGVEPSERMAEIARK-------RGVF--VLKGTA 93
Query: 757 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA 793
++ L D S FD + I +++ E
Sbjct: 94 ENLPLKDES----------FDFALMVTTICFVDDPER 120
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 37.5 bits (87), Expect = 0.013
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 16/94 (17%)
Query: 696 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRA-AKIIHSKLSKKLDAAVPCT 754
T ++D G GSG +L + G+D+S ++A + +S+++
Sbjct: 38 TRILDLGSGSGEMLCTWARDHGI--TGTGIDMSSLFTAQAKRRAEELGVSERVH--FIHN 93
Query: 755 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHM 788
D + + + D+ C+
Sbjct: 94 DA-AGYVANEK----------CDVAACVGATWIA 116
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein;
2.60A {Homo sapiens}
Length = 232
Score = 37.4 bits (86), Expect = 0.013
Identities = 12/48 (25%), Positives = 18/48 (37%)
Query: 58 YRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGIDPSPNVPSAEE 105
+ S+ + + S T KK A+ AA LE L D +
Sbjct: 54 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVKQTSEEKP 101
Score = 32.4 bits (73), Expect = 0.46
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 75 KKKKDAEQSAAEKALEKL 92
K K+ +Q A++K L+ L
Sbjct: 179 KNKRVGKQLASQKILQLL 196
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 37.4 bits (87), Expect = 0.014
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 13/89 (14%)
Query: 686 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK 745
L + A++L+D CG+G+ L+ G+++S+ L+ A K +
Sbjct: 32 DLVRSRTPEASSLLDVACGTGTHLEHFTK---EFGDTAGLELSEDMLTHARK-------R 81
Query: 746 KLDAAVPCTDVKSAVL---FDGSITVFDS 771
DA + D++ L F +++F S
Sbjct: 82 LPDATLHQGDMRDFRLGRKFSAVVSMFSS 110
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 36.9 bits (85), Expect = 0.015
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 9/71 (12%)
Query: 700 DFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759
GCG+ +L L + VD S ++ + + DV+
Sbjct: 48 VLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETM----DVRKL 101
Query: 760 VLFDGSITVFD 770
S FD
Sbjct: 102 DFPSAS---FD 109
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 37.1 bits (86), Expect = 0.015
Identities = 26/142 (18%), Positives = 47/142 (33%), Gaps = 34/142 (23%)
Query: 654 DDSARTFSLLSSKDRMEQALFS--PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDS 711
D+ R ++ S + +QA+ +RV +D GCG G LL +
Sbjct: 25 IDAVRHGAIESRRQVTDQAILLAILGRQPERV---------------LDLGCGEGWLLRA 69
Query: 712 LLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771
L D + VGVD + + A + ++ A ++ V
Sbjct: 70 LAD---RGIEAVGVDGDRTLVDAARA----AGAGEVHLASYAQLAEAKVPVGKD------ 116
Query: 772 RLHGFDIGTCLEVIEHMEEDEA 793
+D+ + H + E
Sbjct: 117 ----YDLICANFALLHQDIIEL 134
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding,
endonuclease, HEL hydrolase, nucleotide-binding,
phosphoprotein, RN binding; HET: MSE; 1.68A {Mus
musculus} PDB: 3c4t_A 2eb1_A
Length = 265
Score = 37.0 bits (86), Expect = 0.016
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 58 YRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92
R ++++ + + A+ +AA +AL L
Sbjct: 227 VRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSL 261
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: d.50.1.1
Length = 98
Score = 34.8 bits (80), Expect = 0.017
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 77 KKDAEQSAAEKALEKL 92
KK A+ AA LE L
Sbjct: 67 KKLAKNKAARATLEIL 82
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A
{Vanderwaltozyma polyspora}
Length = 341
Score = 37.4 bits (87), Expect = 0.019
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 77 KKDAEQSAAEKALEKLGI 94
++AE AA K LE +
Sbjct: 303 IREAEHRAAMKVLENDEL 320
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 135
Score = 35.4 bits (82), Expect = 0.020
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 573 GPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMS 632
GP P G + + SL G ++ E F +G VI +++ M
Sbjct: 27 GPPGSSRPVKGQVVTVHLQTSL-ENGTR----VQEEPELVFTLGDCDVIQALDLSVPLMD 81
Query: 633 VGQSACF 639
VG++A
Sbjct: 82 VGETAMV 88
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862,
csgid, structura genomics; 2.21A {Campylobacter jejuni
subsp}
Length = 248
Score = 36.8 bits (86), Expect = 0.021
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 77 KKDAEQSAAEKALEKLG 93
KK+A+Q AA+ ALEKLG
Sbjct: 230 KKEAQQMAAKIALEKLG 246
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 36.0 bits (83), Expect = 0.029
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 681 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
E L+ + +++FG G+G+L + LL A + G++ S++ A +
Sbjct: 32 AHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLL---AGRTVYGIEPSREMRMIAKE 85
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor,
SHH signalling antagonist, structural genomics
consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Length = 118
Score = 34.1 bits (79), Expect = 0.041
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 573 GPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMS 632
GP P G + + SL G ++ E F +G VI +++ M
Sbjct: 23 GPPGSSRPVKGQVVTVHLQTSLE-NGTR----VQEEPELVFTLGDCDVIQALDLSVPLMD 77
Query: 633 VGQSACF 639
VG++A
Sbjct: 78 VGETAMV 84
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 36.2 bits (83), Expect = 0.041
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756
+ CG S L +L ++VG+D ++L A ++ L +
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAA---GHALAGQI----- 172
Query: 757 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA 793
L D+R G+D+ T + + +D
Sbjct: 173 ---TLHRQDAWKLDTR-EGYDLLTSNGLNIYEPDDAR 205
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel,
central helix, with flexible N-terminal extension,
isomerase; NMR {Homo sapiens}
Length = 157
Score = 35.1 bits (81), Expect = 0.041
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 573 GPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMS 632
GP P G + + SL G ++ E F +G VI +++ M
Sbjct: 53 GPPGSSRPVKGQVVTVHLQTSL-ENGTR----VQEEPELVFTLGDCDVIQALDLSVPLMD 107
Query: 633 VGQSACF 639
VG++A
Sbjct: 108 VGETAMV 114
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA
binding protein; 1.60A {Trypanosoma brucei} SCOP:
a.4.5.46
Length = 92
Score = 33.6 bits (77), Expect = 0.045
Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 20/110 (18%)
Query: 99 NVPSAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSK 158
++P + E KL V+ FS+ + L+G + G V + +
Sbjct: 3 HMPLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKM------AENAEGFVSLETLLTFK-R 55
Query: 159 LANLCKLINPKVESSHLLVLTYIMRAATRLSEFVVTSEGQLSIWRKDPYP 208
+ ++ + + A R SE +V SE L + R+DP P
Sbjct: 56 VNSVTTDVK-------------EVVEAIRPSEKLVLSEDGLMVRRRDPLP 92
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 35.5 bits (82), Expect = 0.047
Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 18/119 (15%)
Query: 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRA- 735
P S +++E ++D GCGSG + L + G+DI+ +++ A
Sbjct: 15 PSSLDLYPIIHNYLQED--DEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAE 69
Query: 736 AKIIHSKLSKKLDAAVP--CTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDE 792
L++K + S D S FD + + + +
Sbjct: 70 TAARSPGLNQKTGGKAEFKVENASSLSFHDSS----------FDFAVMQAFLTSVPDPK 118
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET:
SAM; 2.00A {Escherichia coli}
Length = 200
Score = 35.6 bits (81), Expect = 0.047
Identities = 25/157 (15%), Positives = 55/157 (35%), Gaps = 24/157 (15%)
Query: 664 SSKDRMEQALFSPPLSKQRVEYALQHIKESC------ATTLVDFGCGSGSLLDSLLDYPT 717
+ +E L + +RV L ++++DFGCG L +
Sbjct: 14 QGQLSIEDLLKIHSSTNERVAT-LNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENE 72
Query: 718 ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFD 777
+ DI + ++ + II KL + + +S V +D
Sbjct: 73 KI-IYHAYDIDRAEIAFLSSII-GKLKTTIKYRF--LNKESDVYKG-----------TYD 117
Query: 778 IGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 814
+ L+++ +++ + + L F + ++S P
Sbjct: 118 VVFLLKMLPVLKQQDVNILD--FLQLFHTQNFVISFP 152
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference,
endonucleolytic cleavage, hydrolase/RNA complex; 1.70A
{Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A
2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A
1jfz_A 1rc5_A
Length = 221
Score = 35.6 bits (83), Expect = 0.049
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 77 KKDAEQSAAEKALEKL 92
KK+AEQ AAE+ ++ L
Sbjct: 202 KKEAEQRAAEELIKLL 217
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 2.00A {Thermotoga maritima} SCOP:
a.149.1.1 d.50.1.1
Length = 252
Score = 35.3 bits (82), Expect = 0.063
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 77 KKDAEQSAAEKALEKL 92
KK+AE+ AA A EKL
Sbjct: 232 KKEAEKEAARIAYEKL 247
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 35.6 bits (82), Expect = 0.068
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 672 ALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKS 731
+FS + +QH+ E+ +VD GCG+G + +LLD K+V VD S +
Sbjct: 200 NVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA-KVVFVDESPMA 258
Query: 732 LSRAAK 737
++ +
Sbjct: 259 VASSRL 264
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 35.1 bits (81), Expect = 0.071
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRA-AKIIHSKLSKKLDAAVPCTD 755
++D GCG G L ++ G+ IS+ +++A A+ + L+ ++ D
Sbjct: 64 RVLDVGCGIGKPAVRLATARDV--RVTGISISRPQVNQANARATAAGLANRVT--FSYAD 119
Query: 756 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHM 788
D S FD LE + HM
Sbjct: 120 AMDLPFEDAS----------FDAVWALESLHHM 142
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain
five-stranded anti-parallel beta-sheet alpha-helix
crossing THis sheet; 2.08A {Triticum aestivum} PDB:
3jym_A
Length = 356
Score = 35.2 bits (81), Expect = 0.087
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 574 PDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSV 633
D P + F+ Y L +G ++ E EF + G + P + M
Sbjct: 137 GDKWENPKDPDEVFVKYEARL-EDGT----VVSKSEGVEFTVKDGHLCPALAKAVKTMKK 191
Query: 634 GQSACFCKELPPQ 646
G+ + PQ
Sbjct: 192 GEKVLL--AVKPQ 202
Score = 31.7 bits (72), Expect = 1.1
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 608 REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQ 646
+E FEF+ AVI ++ M G+ A +PP+
Sbjct: 288 QEPFEFKTDEEAVIEGLDRAVLNMKKGEVALV--TIPPE 324
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 34.9 bits (80), Expect = 0.088
Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 17/113 (15%)
Query: 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRA-AKIIH 740
+ + ++ E + + D GCG+G L + T ++ G+D +
Sbjct: 36 KALSFIDNLTEK--SLIADIGCGTGGQTMVLAGHVTG--QVTGLDFLSGFIDIFNRNARQ 91
Query: 741 SKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA 793
S L ++ + + D+ I ++ +
Sbjct: 92 SGLQNRVT--GIVGSMDDLPFRNEE----------LDLIWSEGAIYNIGFERG 132
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 35.0 bits (80), Expect = 0.100
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 580 PSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACF 639
P G ++ Y L G+ + E F F +G G VI ++ A M G+
Sbjct: 47 PMIGDKVYVHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHL 105
Score = 30.0 bits (67), Expect = 3.8
Identities = 10/93 (10%), Positives = 24/93 (25%), Gaps = 10/93 (10%)
Query: 550 LQANSINTLNAIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESRE 609
++ + + GI + + P+ G I G
Sbjct: 132 IELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC--GGRMFDC-----R 184
Query: 610 EFEFEMGTG---AVIPQVEVVTAQMSVGQSACF 639
+ F +G G + ++ +M +
Sbjct: 185 DVAFTVGEGEDHDIPIGIDKALEKMQREEQCIL 217
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition,
DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Length = 236
Score = 34.5 bits (78), Expect = 0.11
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 75 KKKKDAEQSAAEKALEKL 92
+ KK A+ AA+ AL +
Sbjct: 206 RNKKLAKARAAQSALATV 223
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 35.0 bits (81), Expect = 0.12
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 12/115 (10%)
Query: 62 LQLPEFSVVSETFKKKKDAEQSAAEKALEKLGIDPSPNVPSAEEAWDKLIASVKHLFSNE 121
+L + E +++K ++ + + LGI P + D + + L + E
Sbjct: 44 GKLRAGYLFPEIARRRKAHQEKNPDAKIISLGIG-DTTEPLPKYIADAMAKAAAGLATRE 102
Query: 122 FLSSQSPLRGHFIAALRR-----DGDLYGSVPASVIAVCD-SK--LANLCKLINP 168
S +G ALR G A I + D SK +A + +
Sbjct: 103 GYSGYGAEQG--QGALREAVASTFYGHAG-RAADEIFISDGSKCDIARIQMMFGS 154
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 34.6 bits (79), Expect = 0.12
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 576 SGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMG-TGAVIPQVEVVTAQMSVG 634
G PS F+ Y ++ ++ E +G + + + A M G
Sbjct: 60 HGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSG 119
Query: 635 QSACFC 640
+ A
Sbjct: 120 ERALVH 125
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 34.1 bits (78), Expect = 0.13
Identities = 6/41 (14%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
+++ G+G L +++ +D S + ++ A +
Sbjct: 49 DVLELASGTGYWTRHLSG---LADRVTALDGSAEMIAEAGR 86
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 34.3 bits (78), Expect = 0.13
Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 15/139 (10%)
Query: 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK 742
++ L + +++D GCG G L + GVDI++ S++ A++
Sbjct: 53 IKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSIND-ARVRARN 109
Query: 743 LSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQ---FGNI 799
+ ++ D + G FD+ + + S NI
Sbjct: 110 MKRRFKVFFRAQDSYGRHMDLG---------KEFDVISSQFSFHYAFSTSESLDIAQRNI 160
Query: 800 VLSSFRPRILIVSTPNYEY 818
I++ P+ +
Sbjct: 161 ARHLRPGGYFIMTVPSRDV 179
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 33.9 bits (77), Expect = 0.17
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 700 DFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
+ GCG G + D S + L A
Sbjct: 54 EAGCGHGPDAARFGP---QAARWAAYDFSPELLKLARA 88
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase,
hydrolase, nuclease, nucleotide-binding, nucleus, RNA-
binding; NMR {Arabidopsis thaliana}
Length = 102
Score = 32.0 bits (73), Expect = 0.17
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 57 LYRCSLQLPEFS----VVSETFKKKKDAEQSAAEKALEKL 92
C + LP + + S + A++ A KA+ +L
Sbjct: 39 GTICRITLPANAPISEIESSLLPSTEAAKKDACLKAVHEL 78
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 33.7 bits (77), Expect = 0.19
Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 10/127 (7%)
Query: 678 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
LSK R++ ++ + L+D G L LL + + ++ A K
Sbjct: 8 LSK-RLQKVANYVPK--GARLLDVGSDHAYLPIFLLQMGYC-DFAIAGEVVNGPYQSALK 63
Query: 738 -IIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQF 796
+ L+ K+D V + SA +I G + + I + + D+
Sbjct: 64 NVSEHGLTSKID--VRLANGLSAFEEADNIDTITICGMGGRL---IADILNNDIDKLQHV 118
Query: 797 GNIVLSS 803
+VL
Sbjct: 119 KTLVLQP 125
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 33.4 bits (77), Expect = 0.19
Identities = 11/63 (17%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 679 SKQRVEYA----LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSR 734
S +V+ ++++ ++D GCG G + +L ++ DI+++++
Sbjct: 33 SYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALA---DEVKSTTMADINRRAIKL 89
Query: 735 AAK 737
A +
Sbjct: 90 AKE 92
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 33.7 bits (77), Expect = 0.20
Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 23/122 (18%)
Query: 700 DFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 759
+ GCG+G +++L + + D S + + A S++L V
Sbjct: 49 ELGCGAGYQAEAMLAA--GFD-VDATDGSPELAAEA--------SRRLGRPVRTMLFHQL 97
Query: 760 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 818
D +D + H+ DE + ++ + +P + S + E
Sbjct: 98 DAID-----------AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEG 146
Query: 819 NA 820
Sbjct: 147 EG 148
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 33.7 bits (77), Expect = 0.24
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 681 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
+ V + + + + D G G+G +L + + V+ S +A
Sbjct: 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVV 74
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 32.9 bits (75), Expect = 0.31
Identities = 23/158 (14%), Positives = 46/158 (29%), Gaps = 27/158 (17%)
Query: 652 AADDSARTFSLLSSKDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDS 711
A DD ++ +S + E L + ++ ++ ++D G G+G
Sbjct: 1 ATDDVSKAYSSPT--FDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGH 58
Query: 712 LLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 771
L +I G++ + + + A P G+IT
Sbjct: 59 LASLGH---QIEGLEPATRLVELAR------------QTHPSVTFH-----HGTITDLSD 98
Query: 772 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRIL 809
+ + HM E L + R +
Sbjct: 99 SPKRWAGLLAWYSLIHMGPGELPD----ALVALR-MAV 131
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A
{Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB:
1o9h_A
Length = 250
Score = 33.0 bits (74), Expect = 0.35
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 674 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSL-LDYPTALEKIVGVDISQKSL 732
F L+ + + AL + TL D CGSG LL L L + +L +++ D+ L
Sbjct: 31 FPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPL 90
Query: 733 SRAAK 737
AAK
Sbjct: 91 ELAAK 95
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.41
Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 274 RTIGKASSEMRLYFAAPKS 292
+ + K + ++LY A S
Sbjct: 20 QALKKLQASLKLY--ADDS 36
Score = 28.0 bits (61), Expect = 9.5
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 9/35 (25%)
Query: 729 QKSLSRAAKIIHSKLSKKL---DAAVPCTDVKSAV 760
+K +A K + + L KL D+A P +K+ +
Sbjct: 18 EK---QALKKLQASL--KLYADDSA-PALAIKATM 46
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 32.5 bits (74), Expect = 0.45
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 678 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
+SK R+E + + L+D G L L++ + + ++ + A K
Sbjct: 2 ISK-RLELVASFVSQ--GAILLDVGSDHAYLPIELVERGQI-KSAIAGEVVEGPYQSAVK 57
Query: 738 II 739
+
Sbjct: 58 NV 59
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 32.6 bits (73), Expect = 0.50
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 676 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRA 735
P R+ ++D GC G L S+ ++VG+DI + + A
Sbjct: 30 PSCEDGRLRVLKPEWFRGR--DVLDLGCNVGHLTLSIACKWGP-SRMVGLDIDSRLIHSA 86
Query: 736 AKII 739
+ I
Sbjct: 87 RQNI 90
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 32.5 bits (74), Expect = 0.50
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 678 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
LSK R+E +I + + D G L + TA + ++ A K
Sbjct: 8 LSK-RLEKVASYITK--NERIADIGSDHAYLPCFAVKNQTA-SFAIAGEVVDGPFQSAQK 63
Query: 738 -IIHSKLSKKLD 748
+ S L++++D
Sbjct: 64 QVRSSGLTEQID 75
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 32.7 bits (75), Expect = 0.52
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 677 PLSKQRVEYA----LQHIKESCATTLVDFGCGSGSLLDSLLD-YPTALEKIVGVDISQKS 731
S+ ++ L + ++D GCG+G L + P ++ D+S +
Sbjct: 175 VFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKI--RLTLCDVSAPA 232
Query: 732 L 732
+
Sbjct: 233 V 233
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 32.5 bits (73), Expect = 0.57
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 682 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKII 739
+ E AL + V G G L LL + + ++ V+I + K+I
Sbjct: 112 KNEAALGRFRRG--ERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVI 166
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 32.4 bits (74), Expect = 0.58
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 687 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
LQ + ++D GCG+G L + + A +++G D + + +A +
Sbjct: 50 LQLLNPQPGEFILDLGCGTGQLTEKIAQ-SGA--EVLGTDNAATMIEKARQ 97
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 32.3 bits (73), Expect = 0.75
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKS--LSRAAKIIH 740
V++ + + +++ C G L + + + VGV+I K+ L A+ I
Sbjct: 28 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGIL 87
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF
domain, chaperone, peptidyl-prolyl isomerase isomerase;
1.35A {Escherichia coli}
Length = 169
Score = 31.1 bits (71), Expect = 0.93
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 588 ISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 647
+ +++ L +G T + + + F +G ++ +E + VG F L P
Sbjct: 33 VHFTLKLD-DGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTF--SLEPDA 89
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 32.0 bits (72), Expect = 0.94
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 2/99 (2%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP--CT 754
T++D GCG+G + K++GVD+ L A K + K +
Sbjct: 86 TVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVR 145
Query: 755 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA 793
+K + + DI V A
Sbjct: 146 FLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLA 184
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 31.6 bits (71), Expect = 0.98
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 687 LQHIKESCATTLVDFGCGSG-SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK 745
+ ++ ++D G G G P+ L +V +D + + + + +K +K
Sbjct: 20 FEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRL--VVALDADKSRMEKISAKAAAKPAK 77
Query: 746 K 746
Sbjct: 78 G 78
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein,
rotamase; NMR {Helicobacter pylori}
Length = 151
Score = 30.7 bits (70), Expect = 1.0
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 588 ISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 647
I Y V + + S+E EF +GT +I +E + +G+ + P+E
Sbjct: 15 IEYEVREQ-GSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEV--VIAPEE 71
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 31.4 bits (72), Expect = 1.2
Identities = 5/56 (8%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
Query: 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAK 737
E ++ G G +++ + + K+ ++ ++ A +
Sbjct: 48 FLKTFLRGGE----VALEIGTGHTAMMALMAEKFFNC--KVTATEVDEEFFEYARR 97
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 31.3 bits (71), Expect = 1.2
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 667 DRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVD 726
+ + + + +L++ G G+G L L + VGV+
Sbjct: 11 EAWYGTPLGAYVIAEEERALKGLLPP--GESLLEVGAGTGYWLRRL-----PYPQKVGVE 63
Query: 727 ISQKSLSRAAK 737
S+ L+ +
Sbjct: 64 PSEAMLAVGRR 74
>2ppn_A FK506-binding protein 1A; high resolution protein structure,
isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB:
1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A*
1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A*
1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Length = 107
Score = 29.4 bits (67), Expect = 1.4
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 611 FEFEMGTGAVIPQVEVVTAQMSVGQSA 637
F+F +G VI E AQMSVGQ A
Sbjct: 46 FKFMLGKQEVIRGWEEGVAQMSVGQRA 72
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 1.5
Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 20/89 (22%)
Query: 419 LKESSESSRFY--EKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILECSPK 476
L + ES R + E+ L+ + + E + K++ + +
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASK-------------VMEQEWREKAKKDL-----E 121
Query: 477 EFYKKQNESIENASLKVLSWLNAYFKDPD 505
E+ ++Q+E +E + A+++ PD
Sbjct: 122 EWNQRQSEQVEKNKINNRIADKAFYQQPD 150
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 30.7 bits (69), Expect = 1.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
T+VD CG+G+ L ++ G DI K+++ K
Sbjct: 25 TVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTK 65
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 30.9 bits (70), Expect = 1.6
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK-IIHSKLSKKLD 748
++D G+G + L A KIVGV+I ++ A + + +++L +++
Sbjct: 52 KIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIE 102
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5;
2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A*
3ni6_A 3pa7_A
Length = 129
Score = 30.0 bits (68), Expect = 1.6
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 6/72 (8%)
Query: 569 LSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESR---EEFEFEMGTGAVIPQVE 625
L G P G + Y L G K S F+F + G VI +
Sbjct: 23 LKKGDEGEENIPKKGNEVTVHYVGKLESTG---KVFDSSFDRNVPFKFHLEQGEVIKGWD 79
Query: 626 VVTAQMSVGQSA 637
+ + M +
Sbjct: 80 ICVSSMRKNEKC 91
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 30.5 bits (69), Expect = 1.7
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 700 DFGCGSGSLLDSLLD--YPTALEKIVGVDISQKSLSRAAK 737
D GCG G + L + ++G D+ + A +
Sbjct: 52 DAGCGQGRIGGYLSKQGH-----DVLGTDLDPILIDYAKQ 86
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 30.5 bits (69), Expect = 2.3
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 696 TTLVDFGCGSGSLL--DSLLDYPTALEKIVGVDISQKSLSRAAK 737
++D GSG++ + PT+ + D+ +K L A +
Sbjct: 205 MRVLDPFTGSGTIALEAASTLGPTS--PVYAGDLDEKRLGLARE 246
>1ix5_A FKBP; ppiase, isomerase; NMR
{Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Length = 151
Score = 29.6 bits (67), Expect = 2.3
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 591 SVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 647
S+ V + + E EF +G G +I E M VG ++P ++
Sbjct: 25 SIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTV--KIPAEK 79
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein,
phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP:
d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Length = 280
Score = 30.6 bits (69), Expect = 2.3
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 609 EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQ 646
++F F++G G VI ++ A M VG+ P+
Sbjct: 95 DKFSFDLGKGEVIKAWDIAIATMKVGEVCHI--TCKPE 130
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two
domain P rotamase; 2.41A {Thermus thermophilus} PDB:
3cgn_A 3luo_A*
Length = 158
Score = 29.9 bits (68), Expect = 2.3
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 588 ISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 647
I Y++ + EGE L+ E + G +IP +E G++ +P ++
Sbjct: 11 IRYTLQV--EGEV----LDQ-GELSYLHGHRNLIPGLEEALEGREEGEAFQA--HVPAEK 61
>1r9h_A FKB-6, FK506 binding protein family; structural genomics,
peptidylprolyl isomerase, PSI, protein structure
initiative; 1.80A {Caenorhabditis elegans} SCOP:
d.26.1.1
Length = 135
Score = 29.6 bits (67), Expect = 2.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 611 FEFEMGTGAVIPQVEVVTAQMSVGQSACF 639
F F +G G VI ++ A M+ G+ A F
Sbjct: 60 FSFNLGRGNVIKGWDLGVATMTKGEVAEF 88
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase;
structure genomics, DSRM domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Length = 88
Score = 28.5 bits (63), Expect = 2.4
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 51 PQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGIDPSPNVPS 102
+ P + C ++ + + + K++A+Q AA++A +KL P +
Sbjct: 31 NSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTAGT 82
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 30.6 bits (69), Expect = 2.4
Identities = 14/102 (13%), Positives = 26/102 (25%), Gaps = 29/102 (28%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALE-------KIVGVDISQKSLSRAAKIIH-SKLSKKLD 748
+D G G G A I ++I+ R + + + L+ +
Sbjct: 85 KGLDLGAGYGG---------AARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNIT 135
Query: 749 AAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE 790
V D S +D + H +
Sbjct: 136 --VKYGSFLEIPCEDNS----------YDFIWSQDAFLHSPD 165
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 30.2 bits (69), Expect = 2.5
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 701 FGCG--SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK--IIHSKLSKKLDAAVPCTDV 756
G G GS SL KI G DI+ +S+S+A II + D
Sbjct: 7 VGVGFMGGSFAKSLRRSGFK-GKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDF 65
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 30.3 bits (69), Expect = 2.7
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 701 FGCG--SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK--IIHSKLSKKLDAAVPCTDV 756
G G GS SL KI G DI+ +S+S+A II + D
Sbjct: 39 VGVGFMGGSFAKSLRRSGFK-GKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDF 97
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 29.8 bits (67), Expect = 2.8
Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 13/74 (17%)
Query: 665 SKDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSL-LDYPTALEKIV 723
S +++ + +S + L +VD G+G+ D+ L + K+
Sbjct: 1 SNAMIKRPI---HMSHDFLAEVLDDES-----IVVDATMGNGN--DTAFLAGLSK--KVY 48
Query: 724 GVDISQKSLSRAAK 737
D+ +++L + ++
Sbjct: 49 AFDVQEQALGKTSQ 62
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae}
SCOP: d.26.1.1
Length = 113
Score = 28.7 bits (65), Expect = 3.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 611 FEFEMGTGAVIPQVEVVTAQMSVGQSA 637
F+ +G G VI +V ++SVG+ A
Sbjct: 52 FQCNIGVGQVIKGWDVGIPKLSVGEKA 78
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 29.9 bits (67), Expect = 3.3
Identities = 6/41 (14%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
++ G G+G + L + +D L +
Sbjct: 42 VFLELGVGTGRIALPL--IARGYR-YIALDADAAMLEVFRQ 79
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 29.7 bits (67), Expect = 3.3
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
T++D G G+G L L K+ +D+ ++ ++ A +
Sbjct: 40 TVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWE 80
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR
{Saccharomyces cerevisiae} SCOP: d.50.1.1
Length = 94
Score = 28.4 bits (63), Expect = 3.5
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 77 KKDAEQSAAEKALEK 91
K A AAE AL
Sbjct: 58 IKIAGIRAAENALRD 72
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A
{Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B
2lbs_B
Length = 117
Score = 28.5 bits (63), Expect = 3.9
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 77 KKDAEQSAAEKALEK 91
K A AAE AL
Sbjct: 60 IKIAGIRAAENALRD 74
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 29.8 bits (67), Expect = 4.0
Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
++D G G + ++ + ++K+V D+++ L A
Sbjct: 40 EVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARA 77
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase,
polymorphism, rotamase, structural genomics, structural
genomics consortium, SGC; 1.80A {Homo sapiens}
Length = 102
Score = 28.3 bits (64), Expect = 4.2
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 609 EEFEFEMGTGAVIPQVEVVTAQMSVGQSA 637
+ F F +GTG VI + M G+
Sbjct: 34 QPFVFSLGTGQVIKGWDQGLLGMCEGEKR 62
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 29.6 bits (66), Expect = 4.2
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 700 DFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI 738
+ GCG G L L D + + G+DI+ +
Sbjct: 49 EIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTL 87
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A
3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Length = 128
Score = 28.4 bits (64), Expect = 4.5
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 611 FEFEMGTGAVIPQVEVVTAQMSVGQSA 637
F F +G G VI ++ A M G+
Sbjct: 65 FVFSLGKGQVIKAWDIGVATMKKGEIC 91
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus,
phosphoprotein, R isomerase-inhibitor complex; HET: RAP;
1.95A {Mus musculus} PDB: 1pbk_A*
Length = 119
Score = 28.4 bits (64), Expect = 5.1
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 611 FEFEMGTGAVIPQVEVVTAQMSVGQSA 637
F++G G VI + MS G+ A
Sbjct: 57 LSFKVGVGKVIRGWDEALLTMSKGEKA 83
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 29.4 bits (66), Expect = 5.3
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 667 DRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVD 726
D M + + + +++K ++D G G+G L + ++V VD
Sbjct: 29 DSMYETPKWKLYHRLIGSFLEEYLKNP--CRVLDLGGGTGKWSLFLQE---RGFEVVLVD 83
Query: 727 ISQKSLSRAAK 737
S++ L A +
Sbjct: 84 PSKEMLEVARE 94
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone,
rotamase; NMR {Escherichia coli}
Length = 171
Score = 28.8 bits (65), Expect = 5.8
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 588 ISYSVSLVIEGETMKELLES---REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELP 644
++Y V +G L++ ++ G G++I +E VG +
Sbjct: 11 LAYQVRTE-DGV----LVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDV--AVG 63
Query: 645 PQE 647
+
Sbjct: 64 AND 66
>1mus_A TN5 transposase; hairpin, DNA binding, transcription/DNA complex;
HET: DNA; 1.90A {Escherichia coli} SCOP: c.55.3.4 PDB:
1mur_A* 4dm0_A* 1mm8_A 1muh_A* 3ecp_A* 1b7e_A*
Length = 477
Score = 29.3 bits (64), Expect = 5.9
Identities = 4/51 (7%), Positives = 16/51 (31%)
Query: 89 LEKLGIDPSPNVPSAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRR 139
+L ++ + E N +S+++ + + ++
Sbjct: 35 AAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKL 85
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes}
SCOP: c.66.1.45
Length = 344
Score = 29.3 bits (66), Expect = 6.2
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 697 TLVDFGCGSGSLLDSLLDY----PTALEKIVGVDI--SQKSLSRAAKIIH 740
+++D CG+ +LL ++++ GVD+ SL+ +
Sbjct: 133 SILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ 182
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 28.8 bits (65), Expect = 6.6
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 674 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLL-------DSLLDYPTALEKIVGVD 726
FSP +VEYAL+ +K T V + +L L D K+ +D
Sbjct: 9 FSPDGHIFQVEYALEAVKRG--TCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKID 66
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein,
cobalt, copper, cytoplasm, metal- binding, nickel,
rotamase, zinc; NMR {Escherichia coli}
Length = 196
Score = 28.5 bits (64), Expect = 6.8
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 588 ISYSVSLVIEGETMKELLES---REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELP 644
++Y V +G L++ ++ G G++I +E VG +
Sbjct: 11 LAYQVRTE-DGV----LVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDV--AVG 63
Query: 645 PQE 647
+
Sbjct: 64 AND 66
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 28.6 bits (64), Expect = 7.4
Identities = 9/41 (21%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
++D G G+G + L + +++ +GVD +++ + A+
Sbjct: 24 RVLDIGAGAG---HTALAFSPYVQECIGVDATKEMVEVASS 61
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 28.7 bits (64), Expect = 7.5
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 669 MEQALFSPP--LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVD 726
M F P ++R E A + I A ++V G L + + +L+KI +
Sbjct: 1 MSFPYFISPEQAMRERSELARKGIAR--AKSVVALAYAGGVLFVA-ENPSRSLQKISELY 57
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
1.60A {Homo sapiens} PDB: 3o5f_A
Length = 144
Score = 28.1 bits (63), Expect = 7.7
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 611 FEFEMGTGAVIPQVEVVTAQMSVGQSA 637
F F +G G VI ++ A M G+
Sbjct: 81 FVFSLGKGQVIKAWDIGVATMKKGEIC 107
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 28.4 bits (64), Expect = 8.5
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 673 LFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLL-------DSLLDYPTALEKIVGV 725
+FSP +VEYAL+ I A T + G +L +LL+ T+ EK+ +
Sbjct: 11 IFSPEGRLYQVEYALESISH--AGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKL 68
Query: 726 D 726
+
Sbjct: 69 N 69
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 28.6 bits (64), Expect = 8.9
Identities = 15/117 (12%), Positives = 37/117 (31%), Gaps = 30/117 (25%)
Query: 679 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALE-------KIVGVDISQKS 731
+ + L I+ + + ++D G G G + G+DI
Sbjct: 40 GLEATKKILSDIELNENSKVLDIGSGLGG---------GCMYINEKYGAHTHGIDICSNI 90
Query: 732 LSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHM 788
++ A + + + K+ D+ + + + FD+ + I +
Sbjct: 91 VNMANERV--SGNNKII--FEANDILTKEFPENN----------FDLIYSRDAILAL 133
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 28.2 bits (63), Expect = 8.9
Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 737
++ + E ++D G +G + + L +V D++ ++L
Sbjct: 14 MDALEREGLE--MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALESHRG 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.385
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,015,193
Number of extensions: 843871
Number of successful extensions: 2177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2079
Number of HSP's successfully gapped: 167
Length of query: 933
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 831
Effective length of database: 3,853,851
Effective search space: 3202550181
Effective search space used: 3202550181
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.1 bits)