RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 002345
(933 letters)
>d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain
{Trypanosoma brucei [TaxId: 5691]}
Length = 92
Score = 38.2 bits (89), Expect = 4e-04
Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 20/110 (18%)
Query: 99 NVPSAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSK 158
++P + E KL V+ FS+ + L+G + + + G V + +
Sbjct: 3 HMPLSSENKQKLQKQVEFYFSDVNVQRDIFLKGK----MAENAE--GFVSLETLLTFK-R 55
Query: 159 LANLCKLINPKVESSHLLVLTYIMRAATRLSEFVVTSEGQLSIWRKDPYP 208
+ ++ + + A R SE +V SE L + R+DP P
Sbjct: 56 VNSVTTDVK-------------EVVEAIRPSEKLVLSEDGLMVRRRDPLP 92
>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 37.5 bits (87), Expect = 6e-04
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 75 KKKKDAEQSAAEKALEKLGIDPSPNVPSAE 104
KK A+ A K L+ +G P A+
Sbjct: 57 PSKKTAKLHVAVKVLQAMGY---PTGFDAD 83
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 89
Score = 37.5 bits (86), Expect = 6e-04
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 74 FKKKKDAEQSAAEKALEKLGIDPS----PNVPSA 103
KK A+++AAE L +LG S + PS+
Sbjct: 55 GPNKKIAKKNAAEAMLLQLGYKASTSLQDSGPSS 88
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 37.5 bits (86), Expect = 7e-04
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 54 GPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGIDPSPN 99
GP + ++ + T K++A+Q AA+ A ++ + + +
Sbjct: 42 GPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETGS 87
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 37.3 bits (86), Expect = 7e-04
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 58 YRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92
+ S+ + + S T KK A+ AA LE L
Sbjct: 41 FGASVTIDGVTYGSGTASSKKLAKNKAARATLEIL 75
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 69
Score = 35.6 bits (82), Expect = 0.002
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 58 YRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92
+ +++ ++ + + KK+AE+ AA A EKL
Sbjct: 34 FVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL 68
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l
(2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 128
Score = 37.0 bits (85), Expect = 0.002
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 50 IPQKGPCLYRCSLQLPEFSVVS-ETFKKKKDAEQSAAEKALEKLGI 94
+ + ++ + + E S K KK AEQ+AA L G+
Sbjct: 49 VQRTIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGL 94
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain
{Aquifex aeolicus [TaxId: 63363]}
Length = 68
Score = 35.0 bits (80), Expect = 0.003
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 75 KKKKDAEQSAAEKALEKL 92
K KK+AEQ AAE+ ++ L
Sbjct: 50 KSKKEAEQRAAEELIKLL 67
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A,
second dsRBD {Xenopus laevis [TaxId: 8355]}
Length = 69
Score = 34.7 bits (79), Expect = 0.004
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 73 TFKKKKDAEQSAAEKALEKL 92
+ K+ A++ AAEK L K
Sbjct: 48 SGTSKQVAKRVAAEKLLTKF 67
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 35.4 bits (81), Expect = 0.006
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 72 ETFKKKKDAEQSAAEKALEKLG----IDPSPNVPSA 103
E KK A QS A + +L I+ + PS+
Sbjct: 77 EHGSNKKLAAQSCALSLVRQLYHLGVIEAYSSGPSS 112
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 73
Score = 34.5 bits (79), Expect = 0.006
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 73 TFKKKKDAEQSAAEKALEKLGIDP 96
+ KK A+ AAEKAL P
Sbjct: 50 SGPTKKKAKLHAAEKALRSFVQFP 73
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 76
Score = 34.2 bits (78), Expect = 0.007
Identities = 10/46 (21%), Positives = 24/46 (52%)
Query: 58 YRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGIDPSPNVPSA 103
+ C ++ + + + K++A+Q AA++A +KL P ++
Sbjct: 31 FICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTAGTS 76
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 71
Score = 33.6 bits (77), Expect = 0.009
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 75 KKKKDAEQSAAEKALEKL 92
+ KK A+ AA+ AL +
Sbjct: 49 RNKKLAKARAAQSALATV 66
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 34.0 bits (77), Expect = 0.009
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 73 TFKKKKDAEQSAAEKALEKL 92
+ KK A+++AA K L ++
Sbjct: 57 SGTSKKLAKRNAAAKMLLRV 76
>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 34.4 bits (78), Expect = 0.010
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 3/51 (5%)
Query: 55 PCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL---GIDPSPNVPS 102
KKDA+ +AA + L S VP+
Sbjct: 36 QKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINEVKSEEVPA 86
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 33.9 bits (77), Expect = 0.012
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 50 IPQKGP---CLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92
+P GP + + + + KK+A+ +AA+ A+E L
Sbjct: 35 LPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEIL 80
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 34.6 bits (78), Expect = 0.039
Identities = 24/162 (14%), Positives = 62/162 (38%), Gaps = 22/162 (13%)
Query: 658 RTFSLLSSKDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPT 717
R F++ S+ R+ P ++++ + ++ T ++D G GSG +L +
Sbjct: 2 RIFTISESEHRIHN-----PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG 56
Query: 718 ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFD 777
G+D+S + + +K+ + ++ + D + V + D
Sbjct: 57 I--TGTGIDMSS---------LFTAQAKRRAEELGVSERVHFIHNDAAGYVAN---EKCD 102
Query: 778 IGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 818
+ C+ ++ ++ S +P I+++ P +
Sbjct: 103 VAACVGATWIAGGFAGAE--ELLAQSLKPGGIMLIGEPYWRQ 142
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia
carotovora [TaxId: 554]}
Length = 225
Score = 34.1 bits (77), Expect = 0.045
Identities = 26/199 (13%), Positives = 53/199 (26%), Gaps = 42/199 (21%)
Query: 684 EYALQHIKESCA-TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK 742
+ ++ L++ G G L ++ I V+ S++++S
Sbjct: 9 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISH-------- 57
Query: 743 LSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLS 802
+K + + S +D V+EH+++ A +L
Sbjct: 58 ---------AQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDPVA------LLK 102
Query: 803 SFRPRIL------IVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTR 856
L + PN S + + H H+ +
Sbjct: 103 RINDDWLAEGGRLFLVCPNANA-----VSRQIAVKMGIISHNSAVTEAEFAHGHRCTYAL 157
Query: 857 DQFNCWATELAARHNYSVE 875
D A+R V
Sbjct: 158 DTLE----RDASRAGLQVT 172
>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 81
Score = 31.9 bits (72), Expect = 0.050
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 73 TFKKKKDAEQSAAEKALEKLGI 94
+ K A AAE AL +
Sbjct: 54 VGRNIKIAGIRAAENALRDKKM 75
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 31.6 bits (71), Expect = 0.068
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 50 IPQKGP---CLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92
+ GP + + + E + K++A +AA+ A++ L
Sbjct: 29 LSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDIL 74
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded
RNA-dependent protein kinase activator A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 30.8 bits (69), Expect = 0.092
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 73 TFKKKKDAEQSAAEKALEKLGIDPS 97
KK A+ AAE A+ L + S
Sbjct: 49 EGTSKKLAKHRAAEAAINILKANAS 73
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 280
Score = 33.0 bits (74), Expect = 0.14
Identities = 29/227 (12%), Positives = 70/227 (30%), Gaps = 35/227 (15%)
Query: 700 DFGCGSGSLLDSLLDYPTALE-----KIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 754
G G+G + +L A V+ S + +++ K + +K+S +
Sbjct: 46 SIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAK-YKELVAKISNLENVKFAWH 104
Query: 755 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 813
S+ + + +D ++++ ++++ A S +++
Sbjct: 105 KETSSEYQSRMLEKKEL--QKWDFIHMIQMLYYVKDIPA--TLKFFHSLLGTNAKMLIIV 160
Query: 814 PN---------YEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWAT 864
+ +Y + + D L + + + T D +C+
Sbjct: 161 VSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISDCFID 220
Query: 865 ELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRTPPEE-DDLLKD 910
GD F ++ F + PP+ +L KD
Sbjct: 221 GNEN--------------GDLLWDFLTETCNFNATAPPDLRAELGKD 253
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 32.7 bits (73), Expect = 0.16
Identities = 7/36 (19%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSL 732
++D G G + ++ + ++K+V D+++ L
Sbjct: 18 EVLDVATGGGHVANAFAPF---VKKVVAFDLTEDIL 50
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 76
Score = 30.3 bits (68), Expect = 0.17
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 71 SETFKKKKDAEQSAAEKALEKL 92
KK +++ AAEK L +L
Sbjct: 52 EGEGNGKKVSKKRAAEKMLVEL 73
>d2i06a1 e.2.1.1 (A:5-309) Replication terminator protein (Tus)
{Escherichia coli [TaxId: 562]}
Length = 305
Score = 32.5 bits (74), Expect = 0.20
Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 15/135 (11%)
Query: 11 VRKMKLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVV 70
+ K+K T + I+ + + V PGL YR L + + +
Sbjct: 113 INKLKTTFEHIVTVESELPT----AARFEWVHRHLPGLITLN----AYRTLTVLHDPATL 164
Query: 71 SETFKKKKDAEQSAAEKALEKLG---IDPSPNVPSAEEAW----DKLIASVKHLFSNEFL 123
+ K + ++ L +L P P E W ++ + L N L
Sbjct: 165 RFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKL 224
Query: 124 SSQSPLRGHFIAALR 138
+ P++ IA +
Sbjct: 225 KIKRPVKVQPIARVW 239
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 32.3 bits (73), Expect = 0.23
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 740
+++ G GSG++ +L + V+ + +L +A +
Sbjct: 88 DILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS 131
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 32.5 bits (73), Expect = 0.25
Identities = 11/98 (11%), Positives = 29/98 (29%), Gaps = 6/98 (6%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKII----HSKLSKKLDAAVP 752
T+++ G GSG + L + +++ ++ + A K S ++
Sbjct: 101 TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD 160
Query: 753 CTDVKSAVLFDGSITVFDSRLHGF--DIGTCLEVIEHM 788
D + + + D+ +
Sbjct: 161 NVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVF 198
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 31.8 bits (71), Expect = 0.26
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 740
+++D GCG G L + GVDI++ S++ A
Sbjct: 27 SVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRAR 68
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain
{Thermus aquaticus [TaxId: 271]}
Length = 223
Score = 31.6 bits (70), Expect = 0.33
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 683 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDIS 728
V++ + + +++ C G L + + + VGV+I
Sbjct: 8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEID 53
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase
3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 31.4 bits (70), Expect = 0.46
Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756
++D GCG+G L +K++GVD S+ I +KL + + +
Sbjct: 38 VVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTIT--LIKGKI 93
Query: 757 KSAVLFDGSITVFDS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 814
+ L + V S + + L+ + + + ++ G++ ++ VS
Sbjct: 94 EEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDV 153
Query: 815 NYEYNAI 821
N + I
Sbjct: 154 NKHADRI 160
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 31.6 bits (71), Expect = 0.47
Identities = 19/194 (9%), Positives = 52/194 (26%), Gaps = 8/194 (4%)
Query: 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAA 736
L + Q + T +D G G G+ + G +I +
Sbjct: 199 ELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALE-CGCALSFGCEIMDDASDLTI 257
Query: 737 KIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQF 796
+ KK S + + V + +++ ++
Sbjct: 258 LQY--EELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKK 315
Query: 797 GNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTR 856
+L + + I+S ++ + + + +L+ ++ + WT
Sbjct: 316 VEKILQTAKVGCKIISL-----KSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVSWTH 370
Query: 857 DQFNCWATELAARH 870
+ + +
Sbjct: 371 SGGEYYISTVMEDV 384
>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase,
INMT {Human (Homo sapiens) [TaxId: 9606]}
Length = 257
Score = 30.8 bits (68), Expect = 0.58
Identities = 18/169 (10%), Positives = 43/169 (25%), Gaps = 33/169 (19%)
Query: 680 KQRVEYALQHIKESCAT------TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLS 733
+ +++ L+ + ++ TL+D G G + +L + + I D + ++
Sbjct: 31 AEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPT--IYQVLAACDSFQDITLSDFTDRNRE 88
Query: 734 RAAKI----------------IHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL---- 773
K +++AV V
Sbjct: 89 ELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPA 148
Query: 774 --HGFDIGTCLEVIEH---MEEDEASQFGNIVLSSFRPRILIVSTPNYE 817
D L +E + + N+ L+ +
Sbjct: 149 VLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRL 197
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 30.7 bits (68), Expect = 0.59
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQK 730
++D G G+G + Y +++ +GVD +++
Sbjct: 19 RVLDIGAGAGHTALAFSPY---VQECIGVDATKE 49
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 227
Score = 30.5 bits (68), Expect = 0.67
Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 10/122 (8%)
Query: 689 HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLD 748
IK +++ G SG+ + D KI G++ S + L + ++
Sbjct: 70 PIKP--GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-----PIVEERR 122
Query: 749 AAVPCT-DVKSAVLFDGSITVFDSRLHGFDI-GTCLEVIEHMEEDEASQFGNIVLSSFRP 806
VP D + + D +I++ E + G +++
Sbjct: 123 NIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEV-YLKRGGYGMIAVKSR 181
Query: 807 RI 808
I
Sbjct: 182 SI 183
>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga
maritima [TaxId: 2336]}
Length = 266
Score = 30.1 bits (67), Expect = 1.1
Identities = 8/64 (12%), Positives = 22/64 (34%)
Query: 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAA 736
+ + + + ++D G GSG++ L + K+ + ++ A
Sbjct: 86 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAE 145
Query: 737 KIIH 740
+
Sbjct: 146 SNLT 149
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 29.9 bits (66), Expect = 1.4
Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 16/181 (8%)
Query: 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKL 743
+ L +++ ++D CG+G L++ + VD S K L A K
Sbjct: 46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKER---W 99
Query: 744 SKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNI-VLS 802
+++ + A ++ A V + H+ + + Q + L
Sbjct: 100 NRRKEPAFDKWVIEEANWLTLDKDVPAGDGF-DAVICLGNSFAHLPDSKGDQSEHRLALK 158
Query: 803 SF----RPR-ILIVSTPNYEY---NAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEW 854
+ RP +L++ NY+Y + + D + N H
Sbjct: 159 NIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTL 218
Query: 855 T 855
Sbjct: 219 D 219
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 29.6 bits (66), Expect = 1.5
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP-CTD 755
+++ G GSG+L SLL +++ + A + + + D +D
Sbjct: 99 RVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD 158
Query: 756 VKSAVLFDGSITVF 769
+ + L DGS+
Sbjct: 159 LADSELPDGSVDRA 172
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 29.5 bits (65), Expect = 1.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVD 726
+VD+GCG G L L+ K G+D
Sbjct: 30 HIVDYGCGYGYLGLVLMPLLPEGSKYTGID 59
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 29.4 bits (65), Expect = 1.9
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 677 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQ 729
S V + IK + VD G G G ++ + + GV+ +
Sbjct: 134 ETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNC-KHHYGVEKAD 185
>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine
N-methyltransferase, PNMTase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 263
Score = 29.0 bits (64), Expect = 2.4
Identities = 15/127 (11%), Positives = 29/127 (22%), Gaps = 26/127 (20%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH---------------- 740
TL+D G G + LL + E I D + + + +
Sbjct: 57 TLIDIGSGPT--VYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHAC 114
Query: 741 --SKLSKKLDAAVPCTDVKSAVLFDGSIT------VFDSRLHGFDIGTCLEVIEHMEEDE 792
+ + + + D +E + D
Sbjct: 115 LIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDL 174
Query: 793 ASQFGNI 799
AS +
Sbjct: 175 ASFQRAL 181
>d1qnta2 c.55.7.1 (A:6-91) O6-alkylguanine-DNA alkyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 27.1 bits (60), Expect = 2.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 491 LKVLSWLNAYFKDPD 505
++ +WLNAYF P+
Sbjct: 55 MQCTAWLNAYFHQPE 69
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 28.8 bits (63), Expect = 2.8
Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 19/140 (13%)
Query: 651 AAADDSARTFSLLSSKDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLD 710
+ D + ++ ++ A PL V + + + AT ++D GCG G
Sbjct: 42 KRSRDPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDK-ATAVLDIGCGEGYYTH 100
Query: 711 SLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 770
+ D + G+D+S+ ++ AAK + D S
Sbjct: 101 AFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLP-------FSDTS----- 147
Query: 771 SRLHGFDIGTCLEVIEHMEE 790
D + EE
Sbjct: 148 -----MDAIIRIYAPCKAEE 162
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 246
Score = 28.5 bits (62), Expect = 3.2
Identities = 28/179 (15%), Positives = 60/179 (33%), Gaps = 6/179 (3%)
Query: 683 VEYALQHIKESCAT--TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 740
++ ++ E+ +D CG+G+L ++L + VD+SQ+ LS A
Sbjct: 24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCP---KFKNTWAVDLSQEMLSEAENKFR 80
Query: 741 SKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIV 800
S+ K A +++ FD DS + D + + + G +
Sbjct: 81 SQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG-GVFI 139
Query: 801 LSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQF 859
L N ++N + + D+ + F ++ ++
Sbjct: 140 FDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEH 198
>d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase
MvaS {Staphylococcus aureus [TaxId: 1280]}
Length = 166
Score = 27.8 bits (61), Expect = 4.4
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 572 GGPDSGIYPSNGCLSFIS---YSVSLVIEGETMKELLESREEFEFEMGTGAVI 621
+ +++ LVI +T + L S E G A++
Sbjct: 108 EACYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMV 160
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 316
Score = 28.2 bits (62), Expect = 4.5
Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 2/125 (1%)
Query: 697 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 756
++D G G+G L K++G++ S S + +KL + +
Sbjct: 36 VVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEE 93
Query: 757 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 816
+ I + + + + L + H + + G I + + Y
Sbjct: 94 VELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQY 153
Query: 817 EYNAI 821
+ I
Sbjct: 154 KDYKI 158
>d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component,
C-domain {Escherichia coli [TaxId: 562]}
Length = 186
Score = 27.8 bits (61), Expect = 5.3
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 76 KKKDAEQSAAEKALEKLGIDPS-PN 99
K+ + ++ A+ K ID N
Sbjct: 158 KRGEIDKKVVADAIAKFNIDADKVN 182
>d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 356
Score = 27.8 bits (61), Expect = 6.8
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 79 DAEQSAAEKALEKLGIDPSPNVPSAEEAWDKLIASV--KHLFSNEFLSSQSPLR 130
D + +K S N + + + +A + HL SN+ S+Q PL
Sbjct: 285 DLGVIGESEYKDKFKRCESLN---GNQTFIEGMADLVKSHLQSNQLYSNQLPLD 335
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 27.9 bits (61), Expect = 6.8
Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 521 QCYPQNFFKKFSSYRF-IHNVQQ-RKMGEK-LLQANSINTLNAIPE-HGIYCLSIGGPDS 576
Q Y + +F + + ++ R + + +++ + G+ +G D
Sbjct: 3 QQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDR 62
Query: 577 GI 578
+
Sbjct: 63 NL 64
>d1s4ka_ a.35.1.6 (A:) Putative cytoplasmic protein YdiL {Salmonella
typhimurium [TaxId: 90371]}
Length = 120
Score = 26.4 bits (58), Expect = 7.2
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 147 VPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATRLSEFV-VTSEGQLSIWR 203
+ +IA A + IN V+ + + MR LS F + +EG W+
Sbjct: 45 ISPEIIARLKEMKARRQRRINAIVDKINNRIGNNTMRYFPDLSSFQSIYTEGDFIEWK 102
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 328
Score = 27.5 bits (60), Expect = 7.4
Identities = 18/135 (13%), Positives = 45/135 (33%), Gaps = 6/135 (4%)
Query: 684 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKL 743
+Q+ ++D GCG+G L + + ++GVD+S + AK +
Sbjct: 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS--IIEMAKELVELN 83
Query: 744 SKKLDAAVPCTDVKSAVLFDGSITVFDS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVL 801
+ ++ L + + S + + ++ + + + + G I
Sbjct: 84 GFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143
Query: 802 SSFRPRILIVSTPNY 816
+ + Y
Sbjct: 144 DKCSIHLAGLEDSQY 158
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.385
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,402,931
Number of extensions: 158409
Number of successful extensions: 477
Number of sequences better than 10.0: 1
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 50
Length of query: 933
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 839
Effective length of database: 1,116,976
Effective search space: 937142864
Effective search space used: 937142864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.4 bits)