Query 002346
Match_columns 933
No_of_seqs 785 out of 6167
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 22:34:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3omv_A RAF proto-oncogene seri 100.0 9.9E-52 3.4E-56 442.4 24.5 264 581-867 36-303 (307)
2 4asz_A BDNF/NT-3 growth factor 100.0 7.9E-52 2.7E-56 443.6 20.2 261 581-864 13-289 (299)
3 4aoj_A High affinity nerve gro 100.0 1.6E-51 5.4E-56 447.6 21.7 261 581-864 41-319 (329)
4 4gt4_A Tyrosine-protein kinase 100.0 2.4E-51 8.4E-56 441.8 20.9 259 581-861 26-303 (308)
5 4b9d_A Serine/threonine-protei 100.0 8.4E-52 2.9E-56 449.0 16.3 252 581-857 24-276 (350)
6 4fih_A Serine/threonine-protei 100.0 1.2E-50 4.1E-55 439.2 20.2 254 581-868 74-328 (346)
7 4aw0_A HPDK1, 3-phosphoinositi 100.0 5.3E-51 1.8E-55 435.2 16.3 261 581-868 32-295 (311)
8 3fpq_A Serine/threonine-protei 100.0 9.8E-50 3.3E-54 423.9 24.9 251 584-868 29-287 (290)
9 4g3f_A NF-kappa-beta-inducing 100.0 8.1E-50 2.8E-54 431.5 22.0 254 581-865 58-317 (336)
10 3hmm_A TGF-beta receptor type- 100.0 9.9E-50 3.4E-54 430.8 20.3 269 580-864 2-297 (303)
11 3hyh_A Carbon catabolite-derep 100.0 1.8E-49 6.3E-54 417.9 20.2 247 581-857 13-262 (275)
12 4fie_A Serine/threonine-protei 100.0 2.1E-49 7.2E-54 440.0 21.3 253 581-868 151-405 (423)
13 3ubd_A Ribosomal protein S6 ki 100.0 4.5E-50 1.5E-54 428.4 13.3 254 581-868 24-286 (304)
14 4ase_A Vascular endothelial gr 100.0 3.4E-49 1.2E-53 432.5 19.3 273 572-865 55-348 (353)
15 4g31_A Eukaryotic translation 100.0 8.3E-47 2.8E-51 405.5 22.9 251 581-857 5-279 (299)
16 4ecn_A Leucine-rich repeat pro 100.0 1.2E-45 4E-50 448.9 26.1 415 23-449 265-840 (876)
17 4b99_A Mitogen-activated prote 100.0 1.9E-45 6.4E-50 410.2 24.5 269 580-869 53-350 (398)
18 4eco_A Uncharacterized protein 100.0 1.1E-45 3.8E-50 442.8 24.0 417 25-452 28-603 (636)
19 4f9c_A Cell division cycle 7-r 100.0 3.8E-45 1.3E-49 403.6 21.3 204 574-792 14-251 (361)
20 3rgz_A Protein brassinosteroid 100.0 3.4E-44 1.2E-48 440.0 26.9 407 20-433 5-484 (768)
21 3v5w_A G-protein coupled recep 100.0 3.5E-44 1.2E-48 415.2 19.8 250 581-857 189-449 (689)
22 2qkw_B Protein kinase; three-h 100.0 1.4E-43 4.6E-48 389.2 21.9 286 572-865 30-316 (321)
23 3uto_A Twitchin; kinase, muscl 100.0 4E-43 1.4E-47 411.2 26.0 258 580-869 156-416 (573)
24 3uim_A Brassinosteroid insensi 100.0 2.3E-43 8E-48 388.3 19.9 293 566-862 15-309 (326)
25 3p86_A Serine/threonine-protei 100.0 2.8E-42 9.6E-47 375.8 22.7 266 579-868 35-302 (309)
26 3rgz_A Protein brassinosteroid 100.0 2.9E-42 9.9E-47 422.9 22.1 382 67-451 295-742 (768)
27 3fe3_A MAP/microtubule affinit 100.0 1.4E-41 4.7E-46 372.8 23.1 255 580-869 14-270 (328)
28 3fxz_A Serine/threonine-protei 100.0 3.5E-41 1.2E-45 365.2 23.0 250 580-857 19-269 (297)
29 3zgw_A Maternal embryonic leuc 100.0 1.1E-41 3.8E-46 375.5 18.9 252 578-857 7-260 (347)
30 3soc_A Activin receptor type-2 100.0 1.4E-41 4.9E-46 372.9 18.8 266 580-864 23-318 (322)
31 3s95_A LIMK-1, LIM domain kina 100.0 4.5E-41 1.5E-45 367.2 22.1 260 580-867 9-285 (310)
32 4eqm_A Protein kinase; transfe 100.0 6.1E-41 2.1E-45 362.9 22.6 263 580-865 10-276 (294)
33 2psq_A Fibroblast growth facto 100.0 1.1E-40 3.6E-45 372.7 25.0 264 580-865 80-365 (370)
34 2nru_A Interleukin-1 receptor- 100.0 2.4E-40 8.1E-45 361.0 27.1 285 568-863 12-305 (307)
35 3v8s_A RHO-associated protein 100.0 7.6E-41 2.6E-45 376.6 22.1 258 574-857 62-329 (410)
36 3sxs_A Cytoplasmic tyrosine-pr 100.0 2.1E-40 7.2E-45 353.9 24.0 257 580-864 7-264 (268)
37 4hcu_A Tyrosine-protein kinase 100.0 9.7E-41 3.3E-45 356.7 21.4 257 580-864 9-266 (269)
38 2yab_A Death-associated protei 100.0 2.9E-40 9.9E-45 366.6 25.6 259 579-868 10-277 (361)
39 3soa_A Calcium/calmodulin-depe 100.0 3.2E-40 1.1E-44 375.9 26.1 256 578-857 8-267 (444)
40 3kul_A Ephrin type-A receptor 100.0 2.3E-40 8E-45 363.5 23.3 260 580-865 48-314 (325)
41 2c30_A Serine/threonine-protei 100.0 2.6E-40 8.9E-45 362.5 23.5 260 570-857 24-294 (321)
42 1o6l_A RAC-beta serine/threoni 100.0 2E-40 6.9E-45 364.5 22.4 249 581-857 5-260 (337)
43 3lb7_A RAF proto-oncogene seri 100.0 4.5E-40 1.5E-44 358.2 24.8 265 580-867 35-303 (307)
44 2izr_A Casein kinase I isoform 100.0 3.8E-40 1.3E-44 363.1 24.4 266 580-869 8-286 (330)
45 2bdw_A Hypothetical protein K1 100.0 3.5E-40 1.2E-44 367.1 23.6 255 578-857 26-284 (362)
46 1ogq_A PGIP-2, polygalacturona 100.0 1.7E-40 6E-45 362.1 20.3 292 23-430 2-307 (313)
47 3q4u_A Activin receptor type-1 100.0 3.6E-40 1.2E-44 358.5 22.6 262 579-862 6-300 (301)
48 3gen_A Tyrosine-protein kinase 100.0 3.2E-40 1.1E-44 355.5 22.0 258 580-865 23-281 (283)
49 3niz_A Rhodanese family protei 100.0 5.4E-40 1.8E-44 358.4 24.1 273 579-869 19-306 (311)
50 3tki_A Serine/threonine-protei 100.0 2.1E-40 7.3E-45 363.3 20.3 258 580-868 6-266 (323)
51 1tki_A Titin; serine kinase, m 100.0 6.4E-40 2.2E-44 359.0 23.8 252 579-857 3-257 (321)
52 3cbl_A C-FES, proto-oncogene t 100.0 1.8E-40 6.2E-45 372.2 19.7 260 580-865 113-375 (377)
53 2y0a_A Death-associated protei 100.0 1.3E-39 4.3E-44 357.9 25.8 259 579-868 9-276 (326)
54 3vhe_A Vascular endothelial gr 100.0 1.5E-40 5.1E-45 371.2 17.9 274 571-865 12-356 (359)
55 4aw2_A Serine/threonine-protei 100.0 2.6E-40 8.8E-45 375.1 19.9 263 572-857 65-338 (437)
56 3c0i_A Peripheral plasma membr 100.0 6E-40 2.1E-44 364.2 22.4 257 580-857 23-286 (351)
57 2qol_A Ephrin receptor; recept 100.0 3.8E-40 1.3E-44 368.5 20.9 260 580-865 44-310 (373)
58 1qcf_A Haematopoetic cell kina 100.0 3E-40 1E-44 379.6 20.3 259 580-866 187-446 (454)
59 4dc2_A Protein kinase C IOTA t 100.0 6.3E-40 2.2E-44 367.0 21.9 251 580-852 51-307 (396)
60 3txo_A PKC-L, NPKC-ETA, protei 100.0 1.6E-40 5.6E-45 367.7 16.8 250 580-857 22-280 (353)
61 3o0g_A Cell division protein k 100.0 1.6E-39 5.6E-44 351.6 24.3 272 581-868 2-287 (292)
62 1luf_A Muscle-specific tyrosin 100.0 4.6E-40 1.6E-44 364.9 20.3 270 576-867 42-338 (343)
63 3kmu_A ILK, integrin-linked ki 100.0 8.4E-40 2.9E-44 349.7 21.2 255 580-864 9-270 (271)
64 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 6.2E-40 2.1E-44 376.6 21.5 262 580-869 183-445 (452)
65 3tt0_A Basic fibroblast growth 100.0 1.7E-39 6E-44 365.1 24.7 266 580-867 68-355 (382)
66 1opk_A P150, C-ABL, proto-onco 100.0 7.4E-40 2.5E-44 379.9 22.3 257 580-863 219-477 (495)
67 1fot_A TPK1 delta, CAMP-depend 100.0 9.5E-40 3.3E-44 356.6 21.9 246 581-857 6-258 (318)
68 1mp8_A Focal adhesion kinase 1 100.0 1.1E-39 3.7E-44 350.9 21.9 260 580-866 14-278 (281)
69 3ugc_A Tyrosine-protein kinase 100.0 5.5E-40 1.9E-44 356.0 19.6 266 580-865 9-292 (295)
70 2ivs_A Proto-oncogene tyrosine 100.0 1.5E-39 5E-44 356.0 22.9 264 580-865 22-312 (314)
71 2zv2_A Calcium/calmodulin-depe 100.0 1.7E-39 5.9E-44 352.5 22.9 250 581-857 13-292 (298)
72 1csn_A Casein kinase-1; phosph 100.0 2.8E-39 9.4E-44 351.0 24.5 266 580-868 9-287 (298)
73 3dtc_A Mitogen-activated prote 100.0 1.2E-39 4E-44 348.7 21.0 253 580-862 6-271 (271)
74 3a8x_A Protein kinase C IOTA t 100.0 4.1E-39 1.4E-43 355.8 25.9 250 581-852 9-264 (345)
75 4fr4_A YANK1, serine/threonine 100.0 2.5E-39 8.4E-44 361.0 24.1 251 581-857 15-271 (384)
76 3qup_A Tyrosine-protein kinase 100.0 1.2E-39 4.1E-44 358.2 21.2 265 580-865 22-299 (323)
77 1ob3_A PFPK5, cell division co 100.0 6.1E-40 2.1E-44 354.1 18.5 265 581-857 2-280 (288)
78 3l9p_A Anaplastic lymphoma kin 100.0 7.2E-40 2.5E-44 365.7 19.2 264 580-865 70-346 (367)
79 4euu_A Serine/threonine-protei 100.0 6.1E-39 2.1E-43 351.8 26.0 273 580-862 8-307 (319)
80 1kob_A Twitchin; kinase, intra 100.0 6.6E-39 2.3E-43 358.9 26.6 257 580-868 50-309 (387)
81 3t9t_A Tyrosine-protein kinase 100.0 1.5E-39 5.1E-44 347.0 20.5 257 580-864 7-264 (267)
82 1rdq_E PKA C-alpha, CAMP-depen 100.0 1.3E-39 4.4E-44 360.3 20.6 246 581-857 41-293 (350)
83 3og7_A AKAP9-BRAF fusion prote 100.0 1.6E-39 5.3E-44 351.2 20.7 262 580-864 23-288 (289)
84 1xjd_A Protein kinase C, theta 100.0 5E-40 1.7E-44 362.3 17.1 250 579-856 15-268 (345)
85 3dbq_A Dual specificity protei 100.0 2.2E-39 7.4E-44 359.0 22.3 252 580-857 8-273 (343)
86 1qpc_A LCK kinase; alpha beta 100.0 2E-39 6.8E-44 348.5 21.3 260 580-867 12-272 (279)
87 3op5_A Serine/threonine-protei 100.0 1E-39 3.5E-44 364.8 19.7 276 580-871 34-336 (364)
88 2vd5_A DMPK protein; serine/th 100.0 2E-39 6.9E-44 365.3 22.1 262 572-857 52-327 (412)
89 3kfa_A Tyrosine-protein kinase 100.0 2.4E-39 8.1E-44 349.7 21.7 260 579-865 11-272 (288)
90 3a62_A Ribosomal protein S6 ki 100.0 9E-40 3.1E-44 359.2 18.6 250 580-857 16-276 (327)
91 1t46_A HOMO sapiens V-KIT hard 100.0 2.7E-39 9.2E-44 353.8 22.2 265 580-865 22-308 (313)
92 2w4o_A Calcium/calmodulin-depe 100.0 4.3E-39 1.5E-43 356.9 24.0 257 579-869 51-311 (349)
93 3kk8_A Calcium/calmodulin depe 100.0 8.1E-39 2.8E-43 344.7 25.4 254 579-857 4-261 (284)
94 3qd2_B Eukaryotic translation 100.0 3.5E-39 1.2E-43 355.9 23.0 253 579-857 4-325 (332)
95 4f0f_A Serine/threonine-protei 100.0 9.1E-39 3.1E-43 344.9 25.6 255 580-862 18-287 (287)
96 3p1a_A MYT1 kinase, membrane-a 100.0 5.3E-39 1.8E-43 350.7 23.8 247 580-857 56-304 (311)
97 2eva_A TAK1 kinase - TAB1 chim 100.0 5.6E-39 1.9E-43 349.8 23.9 259 581-868 8-267 (307)
98 2h34_A Serine/threonine-protei 100.0 5.8E-39 2E-43 350.1 23.7 263 580-866 33-298 (309)
99 3lxp_A Non-receptor tyrosine-p 100.0 3.1E-39 1.1E-43 353.8 21.5 264 583-868 33-314 (318)
100 3poz_A Epidermal growth factor 100.0 2.7E-39 9.3E-44 355.6 21.1 258 580-864 14-278 (327)
101 3h4j_B AMPK kdaid, SNF1-like p 100.0 1.4E-39 4.9E-44 357.3 18.8 247 581-857 9-258 (336)
102 1k9a_A Carboxyl-terminal SRC k 100.0 5.8E-39 2E-43 368.3 24.7 252 580-864 192-445 (450)
103 3gni_B Strad alpha; kinase fol 100.0 4E-39 1.4E-43 363.5 22.9 275 580-868 24-338 (389)
104 4agu_A Cyclin-dependent kinase 100.0 2.8E-39 9.6E-44 353.3 20.9 278 580-872 2-293 (311)
105 1rjb_A FL cytokine receptor; k 100.0 3.7E-39 1.3E-43 357.6 22.1 266 580-866 44-336 (344)
106 3oz6_A Mitogen-activated prote 100.0 7.4E-39 2.5E-43 361.1 24.7 207 577-793 5-236 (388)
107 3mdy_A Bone morphogenetic prot 100.0 8.5E-39 2.9E-43 353.7 24.7 274 573-865 29-332 (337)
108 2a2a_A Death-associated protei 100.0 1.3E-38 4.5E-43 349.4 25.5 259 579-868 10-277 (321)
109 2i0e_A Protein kinase C-beta I 100.0 2E-39 7E-44 358.6 19.2 250 580-857 19-276 (353)
110 2wqm_A Serine/threonine-protei 100.0 1E-38 3.5E-43 348.6 24.5 270 580-869 31-302 (310)
111 3ork_A Serine/threonine protei 100.0 1.9E-39 6.4E-44 354.4 18.3 255 580-857 11-273 (311)
112 2pmi_A Negative RE, cyclin-dep 100.0 3.3E-39 1.1E-43 353.3 20.2 269 580-857 4-293 (317)
113 3kn6_A Ribosomal protein S6 ki 100.0 4.5E-39 1.6E-43 353.1 21.3 260 581-869 8-276 (325)
114 3kex_A Receptor tyrosine-prote 100.0 3.1E-39 1.1E-43 355.0 19.8 257 581-864 13-276 (325)
115 4e5w_A Tyrosine-protein kinase 100.0 8E-39 2.7E-43 348.1 22.7 263 581-863 21-301 (302)
116 3hko_A Calcium/calmodulin-depe 100.0 4.2E-39 1.4E-43 357.4 20.8 264 576-857 21-330 (345)
117 2pvf_A Fibroblast growth facto 100.0 9.8E-39 3.4E-43 352.5 23.3 266 580-867 34-321 (334)
118 3llt_A Serine/threonine kinase 100.0 4.8E-39 1.6E-43 359.1 21.0 266 572-857 26-355 (360)
119 3g2f_A Bone morphogenetic prot 100.0 2.8E-39 9.4E-44 357.5 18.9 271 580-869 12-323 (336)
120 4fvq_A Tyrosine-protein kinase 100.0 4.4E-39 1.5E-43 347.7 20.0 253 580-865 7-276 (289)
121 2h8h_A Proto-oncogene tyrosine 100.0 2.2E-39 7.6E-44 379.4 18.8 261 580-868 266-527 (535)
122 3brb_A Proto-oncogene tyrosine 100.0 9.2E-39 3.1E-43 349.5 22.5 268 579-867 32-311 (313)
123 1b6c_B TGF-B superfamily recep 100.0 1.5E-38 5.2E-43 352.5 24.5 273 572-866 33-338 (342)
124 3lm5_A Serine/threonine-protei 100.0 8.5E-39 2.9E-43 351.7 22.1 264 576-868 23-292 (327)
125 3rp9_A Mitogen-activated prote 100.0 1.3E-38 4.4E-43 367.3 24.6 195 580-783 52-279 (458)
126 3is5_A Calcium-dependent prote 100.0 1.2E-38 4.1E-43 343.4 22.8 254 580-857 21-278 (285)
127 3g33_A Cell division protein k 100.0 4.7E-39 1.6E-43 350.9 19.8 274 578-868 6-301 (308)
128 3uc3_A Serine/threonine-protei 100.0 5.9E-39 2E-43 357.3 20.9 252 580-857 19-274 (361)
129 2x4f_A Myosin light chain kina 100.0 1.2E-38 4.2E-43 356.0 23.5 246 586-857 94-342 (373)
130 1xbb_A Tyrosine-protein kinase 100.0 1.3E-38 4.4E-43 344.4 22.7 260 580-866 15-281 (291)
131 1u59_A Tyrosine-protein kinase 100.0 1.9E-38 6.6E-43 342.2 24.0 261 581-868 9-276 (287)
132 2ac3_A MAP kinase-interacting 100.0 1.7E-38 5.9E-43 347.8 23.7 264 580-868 11-300 (316)
133 3cc6_A Protein tyrosine kinase 100.0 6.6E-39 2.3E-43 344.8 19.8 258 580-864 11-273 (281)
134 2zmd_A Dual specificity protei 100.0 1.5E-38 5.2E-43 357.7 23.6 252 580-857 55-320 (390)
135 2qr7_A Ribosomal protein S6 ki 100.0 9.9E-39 3.4E-43 352.3 21.4 252 579-857 20-277 (342)
136 3dls_A PAS domain-containing s 100.0 8.8E-39 3E-43 352.2 20.9 251 578-869 21-280 (335)
137 2eue_A Carbon catabolite derep 100.0 6.6E-39 2.3E-43 343.6 19.3 247 581-857 13-262 (275)
138 3f3z_A Calcium/calmodulin-depe 100.0 2E-38 6.9E-43 340.3 23.0 251 579-857 7-261 (277)
139 1cm8_A Phosphorylated MAP kina 100.0 1.7E-38 5.9E-43 354.4 23.3 259 580-857 24-307 (367)
140 2y94_A 5'-AMP-activated protei 100.0 7.2E-39 2.5E-43 367.0 20.5 248 581-857 16-266 (476)
141 1u5q_A Serine/threonine protei 100.0 1.3E-38 4.5E-43 352.4 22.0 248 580-857 53-305 (348)
142 2acx_A G protein-coupled recep 100.0 5.5E-39 1.9E-43 372.3 19.6 255 580-857 183-444 (576)
143 2r5t_A Serine/threonine-protei 100.0 3.6E-39 1.2E-43 359.2 17.3 250 580-857 37-289 (373)
144 4hgt_A Casein kinase I isoform 100.0 2.9E-38 9.8E-43 342.6 23.9 268 578-868 6-284 (296)
145 3gxj_A TGF-beta receptor type- 100.0 1.8E-40 6.1E-45 361.3 6.5 263 580-864 2-297 (303)
146 3c4z_A Rhodopsin kinase; Ser/T 100.0 8.8E-39 3E-43 370.1 21.0 253 580-852 184-438 (543)
147 2xir_A Vascular endothelial gr 100.0 5E-39 1.7E-43 352.1 17.9 276 571-867 17-313 (316)
148 1t4h_A Serine/threonine-protei 100.0 3.9E-38 1.3E-42 340.4 24.7 249 581-857 26-282 (290)
149 1p4o_A Insulin-like growth fac 100.0 1E-38 3.5E-43 350.6 20.4 269 577-867 21-302 (322)
150 2w5a_A Serine/threonine-protei 100.0 5.8E-39 2E-43 344.9 18.0 255 580-857 5-267 (279)
151 3fdn_A Serine/threonine-protei 100.0 9.3E-39 3.2E-43 343.3 19.3 248 580-857 8-257 (279)
152 3uzp_A CKI-delta, CKID, casein 100.0 3E-38 1E-42 342.4 23.6 267 579-868 7-284 (296)
153 3e7e_A HBUB1, BUB1A, mitotic c 100.0 2E-38 6.7E-43 354.6 22.7 256 580-866 64-341 (365)
154 3gbz_A Kinase, CMGC CDK; ssgci 100.0 5.4E-39 1.9E-43 353.6 17.5 272 579-868 32-323 (329)
155 3n9x_A Phosphotransferase; mal 100.0 3.1E-38 1.1E-42 360.4 24.3 200 580-788 25-252 (432)
156 2v62_A Serine/threonine-protei 100.0 6.4E-39 2.2E-43 355.5 18.1 267 580-863 36-327 (345)
157 3lxl_A Tyrosine-protein kinase 100.0 1.4E-38 4.9E-43 350.2 20.7 266 581-866 23-305 (327)
158 1mqb_A Ephrin type-A receptor 100.0 3.5E-38 1.2E-42 347.6 23.7 260 580-865 43-310 (333)
159 3ttj_A Mitogen-activated prote 100.0 1E-38 3.4E-43 366.7 19.9 263 580-857 61-355 (464)
160 3sv0_A Casein kinase I-like; t 100.0 2.8E-38 9.4E-43 362.8 23.5 265 579-866 5-280 (483)
161 4eut_A Serine/threonine-protei 100.0 1.6E-38 5.4E-43 358.9 21.2 276 580-865 8-310 (396)
162 1vzo_A Ribosomal protein S6 ki 100.0 7.6E-39 2.6E-43 355.9 18.2 254 581-857 54-321 (355)
163 1nxk_A MAP kinase-activated pr 100.0 2.9E-38 1E-42 356.4 23.3 251 580-857 60-321 (400)
164 2jii_A Serine/threonine-protei 100.0 1E-38 3.4E-43 355.1 19.2 268 580-869 41-341 (352)
165 3c1x_A Hepatocyte growth facto 100.0 1.7E-38 5.8E-43 354.6 21.0 261 582-868 90-359 (373)
166 3f66_A Hepatocyte growth facto 100.0 3.3E-38 1.1E-42 342.5 22.7 262 581-868 25-295 (298)
167 3i6u_A CDS1, serine/threonine- 100.0 3.3E-38 1.1E-42 358.5 23.6 260 578-868 132-404 (419)
168 4ejn_A RAC-alpha serine/threon 100.0 4.8E-39 1.7E-43 369.2 16.8 256 580-868 147-409 (446)
169 3bhy_A Death-associated protei 100.0 4.2E-38 1.4E-42 338.9 23.1 254 579-857 3-265 (283)
170 2i1m_A Macrophage colony-stimu 100.0 1.3E-38 4.3E-43 351.7 19.3 265 580-865 45-327 (333)
171 4aaa_A Cyclin-dependent kinase 100.0 1.2E-38 4.3E-43 351.2 19.1 267 580-857 24-306 (331)
172 3lij_A Calcium/calmodulin depe 100.0 4.3E-38 1.5E-42 366.0 23.9 253 579-857 35-291 (494)
173 3lzb_A Epidermal growth factor 100.0 2.4E-38 8.2E-43 347.8 20.6 258 580-864 14-278 (327)
174 3cok_A Serine/threonine-protei 100.0 2.8E-38 9.6E-43 339.3 20.6 251 580-857 10-262 (278)
175 3mtl_A Cell division protein k 100.0 8.9E-39 3.1E-43 351.0 16.9 270 581-869 2-287 (324)
176 3pls_A Macrophage-stimulating 100.0 7.9E-38 2.7E-42 339.5 24.2 262 582-868 22-291 (298)
177 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-37 5.8E-42 384.5 30.5 394 55-451 14-562 (844)
178 1x8b_A WEE1HU, WEE1-like prote 100.0 2.2E-38 7.6E-43 342.0 19.5 249 579-857 9-279 (289)
179 4fl3_A Tyrosine-protein kinase 100.0 3.4E-38 1.2E-42 375.3 22.7 252 587-865 375-632 (635)
180 3mwu_A Calmodulin-domain prote 100.0 5.2E-38 1.8E-42 364.7 23.8 253 579-857 20-276 (486)
181 2y7j_A Phosphorylase B kinase 100.0 1.2E-37 4.2E-42 347.4 25.9 261 572-857 85-359 (365)
182 2ozo_A Tyrosine-protein kinase 100.0 6.2E-38 2.1E-42 372.3 24.8 260 582-868 336-602 (613)
183 2jam_A Calcium/calmodulin-depe 100.0 6.9E-38 2.3E-42 341.0 23.1 251 579-857 7-261 (304)
184 2rku_A Serine/threonine-protei 100.0 3.4E-38 1.2E-42 341.7 20.6 250 580-857 14-265 (294)
185 3a7i_A MST3 kinase, serine/thr 100.0 7.3E-38 2.5E-42 340.6 23.0 249 580-857 21-270 (303)
186 2buj_A Serine/threonine-protei 100.0 1.6E-38 5.6E-43 348.2 17.6 263 580-864 28-306 (317)
187 2yex_A Serine/threonine-protei 100.0 1E-37 3.5E-42 334.6 23.3 254 579-857 5-261 (276)
188 3eqc_A Dual specificity mitoge 100.0 4.1E-38 1.4E-42 351.5 20.8 202 580-792 32-234 (360)
189 3mi9_A Cell division protein k 100.0 1E-37 3.5E-42 347.0 23.8 268 581-868 17-316 (351)
190 2w1i_A JAK2; chromosomal rearr 100.0 8.7E-38 3E-42 343.7 22.9 267 580-866 40-324 (326)
191 1byg_A CSK, protein (C-termina 100.0 4.1E-38 1.4E-42 338.0 19.8 253 580-865 20-274 (278)
192 1fvr_A Tyrosine-protein kinase 100.0 5.5E-38 1.9E-42 345.5 21.3 263 581-867 25-303 (327)
193 2owb_A Serine/threonine-protei 100.0 3.7E-38 1.3E-42 347.8 19.9 250 580-857 40-291 (335)
194 2a19_B Interferon-induced, dou 100.0 2.9E-38 1E-42 340.3 18.2 251 578-865 8-275 (284)
195 3q5i_A Protein kinase; CDPK, m 100.0 1.2E-37 4.1E-42 363.2 24.7 253 579-857 34-301 (504)
196 2yfx_A Tyrosine-protein kinase 100.0 7.1E-38 2.4E-42 344.6 21.4 264 580-865 29-305 (327)
197 2fst_X Mitogen-activated prote 100.0 3.7E-38 1.3E-42 351.3 19.1 261 580-857 28-311 (367)
198 3rgf_A Cyclin-dependent kinase 100.0 5.1E-38 1.7E-42 356.2 20.6 276 579-868 18-338 (405)
199 2vgo_A Serine/threonine-protei 100.0 4.5E-38 1.5E-42 338.8 19.1 247 581-857 14-262 (284)
200 3fme_A Dual specificity mitoge 100.0 5.5E-38 1.9E-42 339.3 19.7 255 580-857 6-266 (290)
201 3v47_A TOLL-like receptor 5B a 100.0 1.1E-37 3.7E-42 360.0 23.2 342 53-434 6-414 (455)
202 2r3i_A Cell division protein k 100.0 1.5E-37 5E-42 337.6 22.1 272 581-868 3-288 (299)
203 3byv_A Rhoptry kinase; malaria 100.0 9.4E-39 3.2E-43 358.6 13.0 244 580-857 72-359 (377)
204 2h6d_A 5'-AMP-activated protei 100.0 1.8E-37 6.3E-42 332.6 22.3 249 580-857 10-261 (276)
205 3nyv_A Calmodulin-domain prote 100.0 7.2E-38 2.5E-42 363.7 20.6 253 579-857 24-281 (484)
206 3pfq_A PKC-B, PKC-beta, protei 100.0 5.7E-38 2E-42 375.9 20.3 245 580-852 340-587 (674)
207 2vwi_A Serine/threonine-protei 100.0 1.7E-38 5.8E-43 345.6 14.2 265 579-857 13-287 (303)
208 3qyz_A Mitogen-activated prote 100.0 1.9E-37 6.4E-42 346.4 22.8 262 580-857 26-313 (364)
209 1u46_A ACK-1, activated CDC42 100.0 1.3E-37 4.5E-42 336.5 20.7 259 580-863 17-283 (291)
210 2xrw_A Mitogen-activated prote 100.0 3.4E-37 1.2E-41 345.0 24.7 263 580-857 24-318 (371)
211 4exu_A Mitogen-activated prote 100.0 2.3E-37 8E-42 346.3 23.3 262 580-868 41-328 (371)
212 2clq_A Mitogen-activated prote 100.0 4.4E-37 1.5E-41 333.1 24.3 252 582-857 23-278 (295)
213 1ua2_A CAK, cell division prot 100.0 2.2E-37 7.5E-42 343.3 22.4 268 579-857 8-291 (346)
214 2ycf_A Serine/threonine-protei 100.0 1.7E-37 5.8E-42 340.8 21.2 255 578-857 7-274 (322)
215 3kvw_A DYRK2, dual specificity 100.0 1.7E-37 6E-42 353.5 22.0 200 580-793 96-304 (429)
216 1wak_A Serine/threonine-protei 100.0 1E-37 3.5E-42 353.4 20.0 264 580-857 36-391 (397)
217 3ll6_A Cyclin G-associated kin 100.0 1.2E-37 4E-42 344.6 19.6 258 580-866 27-310 (337)
218 2y4i_B KSR2, HKSR2, kinase sup 100.0 4.1E-38 1.4E-42 345.3 15.2 260 580-866 32-304 (319)
219 3nsz_A CK II alpha, casein kin 100.0 2.4E-37 8.3E-42 340.9 21.0 262 581-868 36-324 (330)
220 1zy4_A Serine/threonine-protei 100.0 7.9E-37 2.7E-41 332.4 24.6 257 579-868 4-288 (303)
221 1blx_A Cyclin-dependent kinase 100.0 4.1E-37 1.4E-41 338.5 22.6 272 579-868 9-301 (326)
222 2wei_A Calmodulin-domain prote 100.0 6.4E-37 2.2E-41 330.4 23.6 256 576-857 17-276 (287)
223 3vq2_A TLR4, TOLL-like recepto 100.0 5.3E-37 1.8E-41 367.6 25.2 382 66-451 32-560 (606)
224 3eb0_A Putative uncharacterize 100.0 4.4E-37 1.5E-41 345.8 22.7 266 577-857 3-321 (383)
225 3pg1_A Mitogen-activated prote 100.0 1.4E-37 4.7E-42 347.6 18.4 279 571-868 12-321 (362)
226 2x7f_A TRAF2 and NCK-interacti 100.0 3.7E-37 1.3E-41 338.9 21.4 254 577-857 20-286 (326)
227 1phk_A Phosphorylase kinase; g 100.0 6.7E-37 2.3E-41 332.2 23.1 254 579-857 15-283 (298)
228 3an0_A Dual specificity mitoge 100.0 1.8E-37 6.1E-42 343.5 18.7 255 579-857 49-310 (340)
229 2b9h_A MAP kinase FUS3, mitoge 100.0 8.2E-37 2.8E-41 340.1 24.0 271 579-869 9-311 (353)
230 3com_A Serine/threonine-protei 100.0 1.1E-36 3.9E-41 333.1 24.5 252 578-857 26-278 (314)
231 2j7t_A Serine/threonine-protei 100.0 3.2E-37 1.1E-41 335.4 19.9 252 580-857 18-275 (302)
232 2j0j_A Focal adhesion kinase 1 100.0 3.7E-37 1.3E-41 367.7 22.1 260 579-865 388-652 (656)
233 3coi_A Mitogen-activated prote 100.0 8.8E-37 3E-41 339.6 23.6 258 580-857 23-305 (353)
234 2pml_X PFPK7, Ser/Thr protein 100.0 5.4E-37 1.8E-41 340.9 21.7 267 580-857 30-322 (348)
235 2wtk_C Serine/threonine-protei 100.0 5.8E-37 2E-41 333.9 21.5 253 579-857 3-263 (305)
236 3q60_A ROP5B; pseudokinase, tr 100.0 7.9E-38 2.7E-42 350.4 14.2 255 581-857 62-352 (371)
237 3cek_A Dual specificity protei 100.0 1.1E-36 3.9E-41 332.8 22.8 253 579-857 26-292 (313)
238 1j1b_A Glycogen synthase kinas 100.0 9.6E-37 3.3E-41 346.6 22.8 262 581-857 54-336 (420)
239 3e3p_A Protein kinase, putativ 100.0 9.1E-37 3.1E-41 340.7 21.9 278 574-869 16-320 (360)
240 1z57_A Dual specificity protei 100.0 9.5E-37 3.3E-41 337.5 21.6 258 580-857 13-328 (339)
241 2vx3_A Dual specificity tyrosi 100.0 2.7E-36 9.2E-41 339.2 25.2 203 579-793 52-263 (382)
242 2i6l_A Mitogen-activated prote 100.0 8.1E-37 2.8E-41 335.1 20.4 264 580-857 10-305 (320)
243 4e7w_A Glycogen synthase kinas 100.0 1E-36 3.6E-41 343.4 21.5 268 580-869 39-327 (394)
244 1q8y_A SR protein kinase; tran 100.0 7.7E-37 2.6E-41 343.1 19.4 270 580-869 18-339 (373)
245 3a99_A Proto-oncogene serine/t 100.0 2.4E-37 8.1E-42 339.1 13.9 247 575-857 37-293 (320)
246 3aln_A Dual specificity mitoge 100.0 6.6E-37 2.3E-41 336.9 17.5 258 580-857 21-285 (327)
247 3fhr_A MAP kinase-activated pr 100.0 1.8E-36 6.1E-41 334.3 19.5 253 579-857 26-287 (336)
248 2z81_A CD282 antigen, TOLL-lik 100.0 5.6E-36 1.9E-40 354.4 22.9 370 54-451 3-512 (549)
249 2iwi_A Serine/threonine-protei 100.0 7.7E-37 2.6E-41 334.1 14.3 252 576-869 26-289 (312)
250 2eu9_A Dual specificity protei 100.0 1.4E-35 5E-40 330.3 24.4 263 580-868 18-338 (355)
251 2rio_A Serine/threonine-protei 100.0 5E-36 1.7E-40 342.2 20.2 254 581-857 15-295 (434)
252 3t6q_A CD180 antigen; protein- 100.0 3.3E-35 1.1E-39 352.0 28.2 357 57-432 14-442 (606)
253 2dyl_A Dual specificity mitoge 100.0 1.3E-35 4.6E-40 325.1 21.7 253 580-857 24-283 (318)
254 2id5_A Lingo-1, leucine rich r 100.0 3.8E-35 1.3E-39 340.6 25.5 317 50-432 4-337 (477)
255 3t6q_A CD180 antigen; protein- 100.0 7E-35 2.4E-39 349.2 26.8 380 66-451 81-562 (606)
256 3p23_A Serine/threonine-protei 100.0 1.1E-35 3.6E-40 338.3 18.2 249 580-857 23-283 (432)
257 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-34 6.6E-39 341.6 29.6 359 66-451 52-512 (562)
258 4eco_A Uncharacterized protein 100.0 1.6E-35 5.5E-40 354.7 20.3 340 66-431 206-603 (636)
259 2z63_A TOLL-like receptor 4, v 100.0 8.4E-35 2.9E-39 346.0 25.7 369 66-451 28-533 (570)
260 1ziw_A TOLL-like receptor 3; i 100.0 3E-34 1E-38 348.5 30.8 371 54-428 3-467 (680)
261 3qa8_A MGC80376 protein; kinas 100.0 1.1E-35 3.7E-40 347.6 16.0 271 580-863 13-308 (676)
262 4ecn_A Leucine-rich repeat pro 100.0 6.4E-35 2.2E-39 354.7 22.7 338 66-432 448-844 (876)
263 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-34 8.3E-39 346.7 27.2 367 66-451 52-582 (635)
264 3uqc_A Probable conserved tran 100.0 4E-35 1.4E-39 315.2 17.1 234 580-864 30-265 (286)
265 2pzi_A Probable serine/threoni 100.0 5E-35 1.7E-39 353.2 18.0 241 580-863 79-327 (681)
266 3vq2_A TLR4, TOLL-like recepto 100.0 3.7E-34 1.3E-38 343.0 23.4 359 66-432 56-562 (606)
267 2id5_A Lingo-1, leucine rich r 100.0 4.2E-34 1.4E-38 331.8 23.1 322 59-451 6-335 (477)
268 3v47_A TOLL-like receptor 5B a 100.0 5E-34 1.7E-38 329.3 23.2 360 69-451 13-410 (455)
269 1ziw_A TOLL-like receptor 3; i 100.0 3.1E-33 1.1E-37 339.6 29.2 369 66-451 222-624 (680)
270 3dzo_A Rhoptry kinase domain; 100.0 1.8E-34 6E-39 327.1 16.6 246 580-857 77-363 (413)
271 3m2w_A MAP kinase-activated pr 100.0 1E-33 3.6E-38 307.0 21.7 230 580-857 16-256 (299)
272 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.9E-33 9.9E-38 331.5 26.4 313 66-432 76-514 (562)
273 2z7x_B TOLL-like receptor 1, v 100.0 8.7E-34 3E-38 333.0 21.6 358 66-450 21-482 (520)
274 2z63_A TOLL-like receptor 4, v 100.0 1.6E-33 5.5E-38 334.9 22.5 351 66-434 52-537 (570)
275 2vuw_A Serine/threonine-protei 100.0 2.3E-34 7.7E-39 317.8 13.8 245 580-857 19-331 (336)
276 3j0a_A TOLL-like receptor 5; m 100.0 1E-32 3.4E-37 341.8 27.7 237 189-432 268-564 (844)
277 3o6n_A APL1; leucine-rich repe 100.0 7.3E-33 2.5E-37 312.4 23.4 305 67-450 46-353 (390)
278 3oja_B Anopheles plasmodium-re 100.0 1E-32 3.5E-37 328.5 24.7 307 67-451 52-360 (597)
279 4fcg_A Uncharacterized protein 100.0 2E-33 6.7E-38 308.2 15.5 267 24-428 24-314 (328)
280 3bz5_A Internalin-J, INLJ; leu 100.0 7.6E-32 2.6E-36 308.8 29.2 303 66-429 42-353 (457)
281 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-32 6.2E-37 324.2 24.7 358 60-449 2-486 (549)
282 3oja_B Anopheles plasmodium-re 100.0 2.2E-32 7.4E-37 325.7 23.9 286 66-431 75-361 (597)
283 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-32 6E-37 321.9 22.1 337 66-432 45-485 (520)
284 3o6n_A APL1; leucine-rich repe 100.0 4.6E-32 1.6E-36 305.9 23.1 285 66-430 69-354 (390)
285 1jl5_A Outer protein YOPM; leu 100.0 7.7E-32 2.6E-36 308.5 21.9 332 66-433 11-377 (454)
286 4fmz_A Internalin; leucine ric 100.0 4.6E-31 1.6E-35 292.9 27.0 301 66-428 44-346 (347)
287 2ft3_A Biglycan; proteoglycan, 100.0 2.8E-31 9.6E-36 292.4 24.0 282 69-426 36-331 (332)
288 1o6v_A Internalin A; bacterial 100.0 6.4E-31 2.2E-35 303.6 27.1 339 67-450 47-389 (466)
289 1xku_A Decorin; proteoglycan, 100.0 1.4E-30 4.8E-35 286.7 28.3 282 70-426 35-330 (330)
290 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-31 4.1E-36 292.3 16.6 249 114-451 51-306 (313)
291 2z80_A TOLL-like receptor 2, v 100.0 1.6E-31 5.6E-36 297.0 17.2 284 51-433 26-319 (353)
292 3bz5_A Internalin-J, INLJ; leu 100.0 1.3E-29 4.4E-34 290.4 27.8 314 76-449 28-352 (457)
293 4fmz_A Internalin; leucine ric 100.0 1.1E-29 3.9E-34 281.6 24.6 303 86-448 40-345 (347)
294 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-29 5E-34 304.9 27.0 350 66-432 76-584 (635)
295 2ft3_A Biglycan; proteoglycan, 100.0 1.8E-29 6.1E-34 278.0 23.0 263 90-428 33-307 (332)
296 1o6v_A Internalin A; bacterial 100.0 3.8E-29 1.3E-33 288.8 24.3 321 87-449 43-366 (466)
297 3g06_A SSPH2 (leucine-rich rep 100.0 2.3E-29 7.8E-34 296.5 22.5 278 51-433 18-302 (622)
298 1jl5_A Outer protein YOPM; leu 100.0 1.3E-28 4.3E-33 281.9 27.6 314 66-438 91-421 (454)
299 2z66_A Variable lymphocyte rec 100.0 2.1E-29 7.2E-34 274.1 18.5 256 51-431 3-264 (306)
300 3zyj_A Leucine-rich repeat-con 100.0 2.1E-28 7.2E-33 280.4 23.9 247 70-430 47-294 (440)
301 1xku_A Decorin; proteoglycan, 100.0 4.7E-28 1.6E-32 266.4 25.7 287 50-402 26-330 (330)
302 3zyi_A Leucine-rich repeat-con 100.0 3E-28 1E-32 280.1 24.0 247 71-431 59-306 (452)
303 1wwl_A Monocyte differentiatio 100.0 1.9E-29 6.5E-34 274.9 5.3 250 85-430 38-311 (312)
304 3oja_A Leucine-rich immune mol 100.0 2.7E-30 9.3E-35 298.7 -2.5 221 111-432 32-255 (487)
305 1ozn_A Reticulon 4 receptor; N 99.9 1.8E-27 6.3E-32 255.9 18.8 199 69-296 14-215 (285)
306 2o6q_A Variable lymphocyte rec 99.9 8.1E-27 2.8E-31 248.5 21.7 217 52-297 2-220 (270)
307 4azs_A Methyltransferase WBDD; 99.9 9E-29 3.1E-33 289.7 6.2 187 588-787 241-437 (569)
308 1ozn_A Reticulon 4 receptor; N 99.9 2.7E-27 9.2E-32 254.6 17.1 206 66-297 32-240 (285)
309 4fcg_A Uncharacterized protein 99.9 6.8E-27 2.3E-31 256.1 20.6 201 66-295 104-314 (328)
310 1wwl_A Monocyte differentiatio 99.9 1.4E-28 4.7E-33 268.1 5.3 246 66-406 43-311 (312)
311 2z80_A TOLL-like receptor 2, v 99.9 4.9E-28 1.7E-32 268.9 8.9 258 66-408 52-318 (353)
312 3o53_A Protein LRIM1, AGAP0063 99.9 3E-28 1E-32 266.1 3.7 264 92-433 12-281 (317)
313 2z66_A Variable lymphocyte rec 99.9 8.5E-27 2.9E-31 253.5 14.0 219 55-299 14-240 (306)
314 3zyi_A Leucine-rich repeat-con 99.9 8.1E-26 2.8E-30 259.8 22.9 245 92-451 56-305 (452)
315 3zyj_A Leucine-rich repeat-con 99.9 1E-25 3.5E-30 258.1 23.0 246 92-451 45-294 (440)
316 3g06_A SSPH2 (leucine-rich rep 99.9 6.8E-25 2.3E-29 258.4 28.5 258 89-450 39-298 (622)
317 1z7x_W Ribonuclease inhibitor; 99.9 1.8E-29 6.3E-34 291.6 -10.9 326 67-430 29-413 (461)
318 3o53_A Protein LRIM1, AGAP0063 99.9 3.2E-27 1.1E-31 257.9 7.5 267 67-412 11-284 (317)
319 3oja_A Leucine-rich immune mol 99.9 6.7E-27 2.3E-31 270.3 8.9 234 89-423 33-270 (487)
320 3en9_A Glycoprotease, O-sialog 99.9 5.8E-26 2E-30 264.5 8.9 186 584-788 339-538 (540)
321 2z62_A TOLL-like receptor 4, v 99.9 1.5E-24 5E-29 232.0 18.9 210 67-299 29-241 (276)
322 2z62_A TOLL-like receptor 4, v 99.9 2.1E-24 7.1E-29 230.8 18.5 43 391-433 200-242 (276)
323 1z7x_W Ribonuclease inhibitor; 99.9 4.6E-28 1.6E-32 279.9 -12.9 328 66-429 3-384 (461)
324 3rfs_A Internalin B, repeat mo 99.9 1.7E-24 5.9E-29 230.7 14.9 229 89-416 18-247 (272)
325 3rfs_A Internalin B, repeat mo 99.9 2.3E-24 7.9E-29 229.7 15.1 225 111-435 17-242 (272)
326 1p9a_G Platelet glycoprotein I 99.9 3.8E-23 1.3E-27 222.0 20.2 202 62-296 6-209 (290)
327 2xwt_C Thyrotropin receptor; s 99.9 1.8E-23 6.1E-28 218.4 16.4 202 81-313 25-236 (239)
328 1p9a_G Platelet glycoprotein I 99.9 5.4E-23 1.9E-27 220.8 20.6 204 133-429 6-209 (290)
329 2o6q_A Variable lymphocyte rec 99.9 1.3E-22 4.6E-27 215.8 23.1 138 234-432 84-222 (270)
330 3m19_A Variable lymphocyte rec 99.9 4.7E-23 1.6E-27 216.8 18.5 141 53-200 3-144 (251)
331 4glp_A Monocyte differentiatio 99.9 1.6E-23 5.6E-28 227.8 12.5 203 137-429 91-308 (310)
332 3goz_A Leucine-rich repeat-con 99.9 1.2E-24 4E-29 242.4 1.5 259 95-432 3-301 (362)
333 4glp_A Monocyte differentiatio 99.9 8.1E-23 2.8E-27 222.3 12.7 225 67-317 65-308 (310)
334 2ast_B S-phase kinase-associat 99.9 1.5E-24 5.2E-29 239.1 -1.0 211 53-293 35-258 (336)
335 3goz_A Leucine-rich repeat-con 99.9 4.2E-24 1.4E-28 237.8 1.2 208 70-299 2-242 (362)
336 1h6u_A Internalin H; cell adhe 99.9 2.7E-22 9.1E-27 217.6 14.3 215 92-433 21-235 (308)
337 2xwt_C Thyrotropin receptor; s 99.9 5.8E-22 2E-26 206.8 16.3 196 114-425 32-236 (239)
338 3m19_A Variable lymphocyte rec 99.9 2.6E-21 8.8E-26 203.5 20.1 180 90-297 14-194 (251)
339 1zar_A RIO2 kinase; serine kin 99.9 1.4E-22 4.9E-27 216.0 10.5 155 574-762 83-253 (282)
340 2ca6_A RAN GTPase-activating p 99.9 2E-24 6.9E-29 242.9 -4.2 205 160-432 91-320 (386)
341 2o6s_A Variable lymphocyte rec 99.9 8.7E-22 3E-26 200.7 15.2 188 50-283 2-190 (208)
342 4ay9_X Follicle-stimulating ho 99.9 1.1E-21 3.7E-26 217.1 16.6 221 53-313 7-233 (350)
343 1h6u_A Internalin H; cell adhe 99.9 1.5E-21 5E-26 211.8 17.2 192 66-297 41-232 (308)
344 2ca6_A RAN GTPase-activating p 99.9 1.7E-23 5.9E-28 235.3 -1.9 250 81-408 23-320 (386)
345 3cvr_A Invasion plasmid antige 99.9 1.6E-21 5.5E-26 226.7 14.5 192 56-300 49-248 (571)
346 4ay9_X Follicle-stimulating ho 99.9 2.5E-21 8.7E-26 214.2 15.0 244 93-429 12-260 (350)
347 3cvr_A Invasion plasmid antige 99.8 1.3E-20 4.3E-25 219.2 18.6 195 114-415 60-254 (571)
348 2ast_B S-phase kinase-associat 99.8 1.7E-22 5.9E-27 222.7 1.3 251 91-434 48-312 (336)
349 2o6s_A Variable lymphocyte rec 99.8 2.9E-20 9.9E-25 189.4 15.8 103 94-200 11-113 (208)
350 3ogk_B Coronatine-insensitive 99.8 6.1E-23 2.1E-27 244.8 -5.1 350 67-430 139-528 (592)
351 4b8c_D Glucose-repressible alc 99.8 6.2E-21 2.1E-25 230.3 7.2 224 25-299 130-358 (727)
352 1m9s_A Internalin B; cell inva 99.8 1.2E-19 4.2E-24 213.4 17.6 189 71-299 26-214 (605)
353 3e6j_A Variable lymphocyte rec 99.8 1.1E-19 3.9E-24 187.7 15.3 151 51-204 15-176 (229)
354 1h6t_A Internalin B; cell adhe 99.8 1.5E-19 5.2E-24 194.1 14.7 188 72-299 30-217 (291)
355 3ogk_B Coronatine-insensitive 99.8 1.7E-21 5.6E-26 232.4 -1.1 342 66-425 164-548 (592)
356 1h6t_A Internalin B; cell adhe 99.8 1.6E-19 5.4E-24 194.0 11.9 100 92-200 26-125 (291)
357 1m9s_A Internalin B; cell inva 99.8 2.7E-19 9.4E-24 210.5 14.3 191 88-317 19-211 (605)
358 2v70_A SLIT-2, SLIT homolog 2 99.8 7E-19 2.4E-23 180.5 15.5 152 70-250 15-168 (220)
359 2v9t_B SLIT homolog 2 protein 99.8 7E-19 2.4E-23 180.5 15.2 151 49-201 5-166 (220)
360 2p1m_B Transport inhibitor res 99.8 2.1E-21 7.2E-26 231.6 -6.4 243 66-311 105-405 (594)
361 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-18 4.1E-23 178.8 14.6 155 190-432 14-170 (220)
362 2xot_A Amphoterin-induced prot 99.8 6.8E-19 2.3E-23 195.5 11.9 178 70-296 22-203 (361)
363 2v9t_B SLIT homolog 2 protein 99.8 3.7E-18 1.3E-22 175.1 16.1 162 54-249 4-166 (220)
364 1zth_A RIO1 serine protein kin 99.8 1.1E-18 3.8E-23 183.7 9.5 139 582-737 48-219 (258)
365 3e6j_A Variable lymphocyte rec 99.8 1.3E-17 4.3E-22 172.4 17.1 109 93-206 22-130 (229)
366 1xeu_A Internalin C; cellular 99.8 1.4E-18 4.9E-23 183.4 10.1 173 88-299 17-189 (263)
367 1dce_A Protein (RAB geranylger 99.7 9.5E-21 3.2E-25 221.6 -7.5 203 135-422 347-567 (567)
368 2xot_A Amphoterin-induced prot 99.7 2.9E-18 9.9E-23 190.4 12.7 153 49-204 12-179 (361)
369 4ezg_A Putative uncharacterize 99.7 4.4E-18 1.5E-22 171.5 11.1 156 109-296 40-195 (197)
370 1dce_A Protein (RAB geranylger 99.7 6E-20 2.1E-24 214.8 -3.7 193 87-310 346-567 (567)
371 4ezg_A Putative uncharacterize 99.7 9.1E-18 3.1E-22 169.2 11.7 155 86-272 40-195 (197)
372 1xeu_A Internalin C; cellular 99.7 1.3E-17 4.4E-22 176.1 11.9 167 68-273 21-187 (263)
373 1w8a_A SLIT protein; signaling 99.7 1.6E-17 5.4E-22 166.5 11.1 131 70-205 12-144 (192)
374 4b8c_D Glucose-repressible alc 99.7 1.1E-18 3.7E-23 210.8 2.7 161 90-299 173-333 (727)
375 2p1m_B Transport inhibitor res 99.7 2.9E-19 1E-23 213.1 -5.0 348 66-430 66-496 (594)
376 2o6r_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 154.6 13.4 138 51-204 3-141 (177)
377 1w8a_A SLIT protein; signaling 99.7 1.2E-16 4.2E-21 160.0 8.9 111 93-207 11-122 (192)
378 4gyi_A RIO2 kinase; protein ki 99.6 1E-16 3.6E-21 174.4 7.1 145 575-737 86-265 (397)
379 2ell_A Acidic leucine-rich nuc 99.6 3.9E-16 1.3E-20 152.8 10.1 136 66-206 24-165 (168)
380 2wfh_A SLIT homolog 2 protein 99.6 1.1E-15 3.8E-20 152.9 12.7 128 70-202 14-141 (193)
381 2ell_A Acidic leucine-rich nuc 99.6 2.3E-15 8E-20 147.2 11.1 83 113-200 24-108 (168)
382 3sb4_A Hypothetical leucine ri 99.6 8.7E-16 3E-20 168.1 8.4 60 362-422 268-328 (329)
383 2wfh_A SLIT homolog 2 protein 99.6 1.4E-14 4.8E-19 144.9 14.2 80 116-201 13-92 (193)
384 2je0_A Acidic leucine-rich nuc 99.6 1.8E-15 6.1E-20 144.8 7.1 129 66-196 17-149 (149)
385 2o6r_A Variable lymphocyte rec 99.6 1.7E-14 6E-19 142.3 13.7 133 92-252 9-141 (177)
386 2je0_A Acidic leucine-rich nuc 99.6 3.4E-15 1.2E-19 142.9 7.7 85 112-200 16-101 (149)
387 3sb4_A Hypothetical leucine ri 99.5 6.4E-15 2.2E-19 161.2 8.8 237 89-398 48-328 (329)
388 1a9n_A U2A', U2A'; complex (nu 99.5 2.2E-14 7.5E-19 141.4 8.5 128 66-200 19-153 (176)
389 1a9n_A U2A', U2A'; complex (nu 99.5 1.6E-14 5.3E-19 142.5 7.1 86 109-200 15-101 (176)
390 4fdw_A Leucine rich hypothetic 99.5 3.9E-13 1.3E-17 150.2 19.0 171 89-295 112-284 (401)
391 1ds9_A Outer arm dynein; leuci 99.5 3.6E-16 1.2E-20 157.6 -7.7 133 67-205 19-158 (198)
392 1ds9_A Outer arm dynein; leuci 99.5 6.4E-16 2.2E-20 155.7 -6.2 160 86-295 14-185 (198)
393 3g39_A Variable lymphocyte rec 99.4 4.8E-13 1.6E-17 130.8 11.8 104 70-202 13-117 (170)
394 3g39_A Variable lymphocyte rec 99.4 4.4E-13 1.5E-17 131.0 11.6 102 50-151 4-116 (170)
395 2r9u_A Variable lymphocyte rec 99.4 1.4E-12 4.8E-17 127.8 11.9 103 69-200 15-118 (174)
396 4fdw_A Leucine rich hypothetic 99.4 6.3E-12 2.1E-16 140.4 18.7 262 67-428 114-383 (401)
397 2r9u_A Variable lymphocyte rec 99.4 2.1E-12 7.3E-17 126.5 12.4 102 50-151 7-119 (174)
398 2ifg_A High affinity nerve gro 99.2 1.7E-11 5.9E-16 135.0 11.2 85 54-151 7-94 (347)
399 3tm0_A Aminoglycoside 3'-phosp 99.2 3E-11 1E-15 127.3 12.6 147 576-735 9-212 (263)
400 4fs7_A Uncharacterized protein 99.2 4.3E-10 1.5E-14 126.0 20.8 289 83-425 64-376 (394)
401 2ifg_A High affinity nerve gro 99.2 3.3E-11 1.1E-15 132.7 10.0 105 93-201 11-117 (347)
402 3un9_A NLR family member X1; l 99.2 1.2E-13 4E-18 152.9 -9.8 62 234-295 125-196 (372)
403 3un9_A NLR family member X1; l 99.1 4.7E-13 1.6E-17 148.1 -8.1 163 113-296 72-253 (372)
404 1nd4_A Aminoglycoside 3'-phosp 99.1 1.6E-10 5.6E-15 121.5 10.4 136 582-735 21-213 (264)
405 3dxp_A Putative acyl-COA dehyd 99.0 1.7E-09 5.7E-14 119.6 12.6 143 585-736 42-248 (359)
406 4gt6_A Cell surface protein; l 98.9 4.5E-08 1.5E-12 109.5 21.0 37 253-290 260-296 (394)
407 4fs7_A Uncharacterized protein 98.9 2.4E-08 8.1E-13 111.8 18.5 293 101-428 58-355 (394)
408 3rw6_A Nuclear RNA export fact 98.9 4.1E-11 1.4E-15 124.3 -5.9 149 53-205 76-238 (267)
409 3sg8_A APH(2'')-ID; antibiotic 98.9 1.3E-09 4.5E-14 117.4 5.3 186 586-788 25-287 (304)
410 2ra8_A Uncharacterized protein 98.8 4.4E-10 1.5E-14 123.0 1.0 139 133-296 168-321 (362)
411 2ra8_A Uncharacterized protein 98.8 3E-09 1E-13 116.5 5.6 141 231-429 168-321 (362)
412 4gt6_A Cell surface protein; l 98.8 1.9E-07 6.3E-12 104.5 20.3 292 84-428 57-370 (394)
413 3r70_A Aminoglycoside phosphot 98.6 3.1E-07 1.1E-11 99.4 13.8 136 582-736 38-237 (320)
414 4h09_A Hypothetical leucine ri 98.5 2.7E-06 9.2E-11 94.4 19.1 293 67-425 47-343 (379)
415 3d1u_A Putative fructosamine-3 98.5 4.3E-07 1.5E-11 96.2 10.7 146 582-735 16-215 (288)
416 3rw6_A Nuclear RNA export fact 98.3 7.9E-08 2.7E-12 99.6 0.8 117 74-194 124-258 (267)
417 3tdw_A Gentamicin resistance p 98.3 3E-06 1E-10 90.8 13.0 135 586-735 24-223 (306)
418 4gkh_A Aminoglycoside 3'-phosp 98.3 3.6E-06 1.2E-10 88.6 12.8 134 588-735 31-222 (272)
419 3ovc_A Hygromycin-B 4-O-kinase 98.3 3.6E-06 1.2E-10 92.4 12.8 147 582-736 42-243 (362)
420 1io0_A Tropomodulin; LRR prote 98.3 7.4E-08 2.5E-12 95.0 -1.2 62 234-295 92-164 (185)
421 1io0_A Tropomodulin; LRR prote 98.3 4.7E-08 1.6E-12 96.5 -2.9 121 80-200 26-164 (185)
422 4h09_A Hypothetical leucine ri 98.1 0.00012 4E-09 81.1 20.1 262 86-425 42-320 (379)
423 3ats_A Putative uncharacterize 98.1 7.2E-06 2.5E-10 90.1 9.6 83 586-668 25-122 (357)
424 2q83_A YTAA protein; 2635576, 97.9 9.2E-05 3.2E-09 80.6 14.3 142 587-735 38-251 (346)
425 3jr1_A Putative fructosamine-3 97.8 0.00015 5.1E-09 77.3 12.9 141 585-732 40-232 (312)
426 2olc_A MTR kinase, methylthior 97.7 0.00011 3.7E-09 82.0 11.6 77 586-664 35-120 (397)
427 3f7w_A Putative fructosamine-3 97.6 0.00017 5.9E-09 76.3 10.6 80 581-666 15-97 (288)
428 2pyw_A Uncharacterized protein 97.5 0.00062 2.1E-08 76.3 13.9 78 705-785 231-313 (420)
429 2ppq_A HSK, HK, homoserine kin 97.4 0.0015 5.1E-08 70.2 14.2 160 571-735 7-216 (322)
430 3csv_A Aminoglycoside phosphot 97.3 0.00084 2.9E-08 72.6 11.3 144 587-737 24-218 (333)
431 1zyl_A Hypothetical protein YI 97.3 0.003 1E-07 68.0 15.1 158 572-735 12-222 (328)
432 3e4g_A ATP synthase subunit S, 97.2 0.00011 3.6E-09 70.5 2.1 82 115-198 63-150 (176)
433 3dxq_A Choline/ethanolamine ki 97.2 0.00085 2.9E-08 71.4 9.0 71 586-666 23-95 (301)
434 1pgv_A TMD-1, tropomodulin TMD 97.1 6.6E-05 2.2E-09 73.3 -0.5 94 181-294 64-169 (197)
435 3rfe_A Platelet glycoprotein I 97.0 0.00087 3E-08 61.1 6.0 38 113-150 31-68 (130)
436 3feg_A Choline/ethanolamine ki 97.0 0.003 1E-07 69.1 11.3 143 586-735 55-253 (379)
437 1nw1_A Choline kinase (49.2 KD 96.9 0.0026 8.8E-08 71.2 9.7 73 586-666 78-159 (429)
438 1pgv_A TMD-1, tropomodulin TMD 96.8 8.7E-05 3E-09 72.5 -2.1 71 81-151 32-112 (197)
439 3e4g_A ATP synthase subunit S, 96.7 0.00043 1.5E-08 66.2 1.6 34 236-269 115-150 (176)
440 3i1a_A Spectinomycin phosphotr 96.6 0.0087 3E-07 64.6 11.6 64 594-666 36-108 (339)
441 2qg7_A Ethanolamine kinase PV0 96.5 0.013 4.5E-07 65.8 12.0 74 586-666 113-188 (458)
442 3rfe_A Platelet glycoprotein I 96.4 0.0051 1.7E-07 55.9 6.6 56 238-295 11-68 (130)
443 3c5i_A Choline kinase; choline 96.4 0.006 2E-07 66.9 8.4 74 586-666 38-121 (369)
444 2yle_A Protein spire homolog 1 96.3 0.039 1.3E-06 54.0 12.7 103 664-787 33-135 (229)
445 3f2s_A CK, chetk-alpha, cholin 95.8 0.023 7.9E-07 62.3 9.3 145 587-735 58-279 (401)
446 3mes_A Choline kinase; malaria 95.4 0.028 9.7E-07 62.2 8.4 142 586-735 75-290 (424)
447 2k1k_A Ephrin type-A receptor 90.9 0.18 6.2E-06 34.0 3.1 32 480-511 6-37 (38)
448 2ks1_B Epidermal growth factor 88.6 0.53 1.8E-05 32.8 4.0 29 486-514 12-40 (44)
449 4ann_A ESSB; membrane protein, 88.3 1.6 5.5E-05 42.6 8.9 116 637-789 43-158 (215)
450 3g15_A CK, chetk-alpha, cholin 88.0 1.9 6.6E-05 47.2 10.6 29 707-735 245-279 (401)
451 2l2t_A Receptor tyrosine-prote 87.7 0.61 2.1E-05 32.4 3.8 29 486-514 11-39 (44)
452 3cxl_A N-chimerin; SH2, RHO-GA 86.6 0.094 3.2E-06 58.9 -1.2 62 585-649 146-214 (463)
453 2jwa_A Receptor tyrosine-prote 84.6 0.98 3.3E-05 31.3 3.6 28 486-514 13-40 (44)
454 4ano_A ESSB; membrane protein, 83.5 3.6 0.00012 40.3 8.7 115 637-789 48-163 (219)
455 2lz0_A Uncharacterized protein 60.5 18 0.0006 30.5 6.3 47 123-172 6-52 (100)
456 2lz0_A Uncharacterized protein 44.3 22 0.00076 29.8 4.3 45 102-147 8-53 (100)
457 2l34_A TYRO protein tyrosine k 42.7 15 0.00052 23.8 2.2 26 483-508 5-30 (33)
458 3ls8_A Phosphatidylinositol 3- 37.0 2.7E+02 0.0091 31.7 12.8 86 642-735 402-501 (614)
459 2knc_A Integrin alpha-IIB; tra 37.0 61 0.0021 23.6 4.8 24 485-508 13-36 (54)
460 1cja_A Protein (actin-fragmin 35.9 1.1E+02 0.0037 31.9 8.6 138 585-736 73-237 (342)
461 2knc_B Integrin beta-3; transm 34.4 32 0.0011 27.4 3.4 24 484-507 10-33 (79)
462 1iij_A ERBB-2 receptor protein 33.7 12 0.00041 24.5 0.6 6 507-512 29-34 (35)
463 2l8s_A Integrin alpha-1; trans 30.3 53 0.0018 23.9 3.5 21 488-508 13-33 (54)
464 2klu_A T-cell surface glycopro 28.0 28 0.00095 26.2 1.8 23 487-509 13-35 (70)
465 2k9j_B Integrin beta-3; transm 27.5 48 0.0017 22.9 2.9 27 484-510 9-35 (43)
466 2jo1_A Phospholemman; FXYD1, N 26.7 1E+02 0.0034 23.6 4.6 22 490-511 21-42 (72)
467 2l2t_A Receptor tyrosine-prote 25.1 46 0.0016 23.1 2.4 13 501-513 29-41 (44)
468 2ks1_B Epidermal growth factor 24.7 60 0.0021 22.5 2.9 15 500-514 29-43 (44)
469 2k1a_A Integrin alpha-IIB; sin 24.6 66 0.0022 22.1 3.1 9 499-507 25-33 (42)
470 2jp3_A FXYD domain-containing 24.3 82 0.0028 23.9 3.8 18 490-507 22-39 (67)
471 3ox7_P MH027; urokinase-type p 21.2 28 0.00094 19.4 0.5 10 52-61 5-14 (23)
No 1
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=9.9e-52 Score=442.45 Aligned_cols=264 Identities=25% Similarity=0.427 Sum_probs=208.4
Q ss_pred cCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEee
Q 002346 581 DNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYEY 660 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 660 (933)
+++.+.+.||+|+||+||+|.+. ..||||+++....+....++|.+|+.++++++|||||+++|+|.+ +..++||||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy 112 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQW 112 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred HHeEEeeEEeeCCCcEEEEEEEC--CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEc
Confidence 56788899999999999999874 369999998766666777899999999999999999999998865 568999999
Q ss_pred cCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCCC
Q 002346 661 MPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPDG 740 (933)
Q Consensus 661 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~~ 740 (933)
|++|+|.++++.. ..+++|.++..|+.|||+||+|||+ ++||||||||+|||+++++.+||+|||+|+.....
T Consensus 113 ~~gGsL~~~l~~~----~~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~ 185 (307)
T 3omv_A 113 CEGSSLYKHLHVQ----ETKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp CSSCBHHHHHHTS----CCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCBC----
T ss_pred CCCCCHHHHHhhc----CCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCccCHHHEEECCCCcEEEeeccCceecccC
Confidence 9999999999652 2469999999999999999999999 89999999999999999999999999999865533
Q ss_pred C-ceeecccccccCcccccccCC---CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcc
Q 002346 741 K-YSVETRLAGTFGYLAPEYAAT---GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKA 816 (933)
Q Consensus 741 ~-~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (933)
. .......+||+.|||||++.+ +.|+.++|||||||++|||+||+.||......... . .........+.
T Consensus 186 ~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~--~----~~~~~~~~~p~- 258 (307)
T 3omv_A 186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQI--I----FMVGRGYASPD- 258 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHH--H----HHHHTTCCCCC-
T ss_pred CcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHH--H----HHHhcCCCCCC-
Confidence 2 223345689999999999853 46899999999999999999999999865432211 1 11111111111
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcC
Q 002346 817 IDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWK 867 (933)
Q Consensus 817 ~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~ 867 (933)
+. .+. .+....+.+++.+||+.||++||||+||++.|+.+.+.+.
T Consensus 259 ~~-~~~-----~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lp 303 (307)
T 3omv_A 259 LS-KLY-----KNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp ST-TSC-----TTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred cc-ccc-----ccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccCC
Confidence 00 000 1122467799999999999999999999999988866554
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=7.9e-52 Score=443.60 Aligned_cols=261 Identities=30% Similarity=0.484 Sum_probs=213.1
Q ss_pred cCCccCCccccCCCeEEEEEEeC------CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCcee
Q 002346 581 DNFSEANILGRGGFGVVYGGELP------DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSER 654 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 654 (933)
++|.+.+.||+|+||.||+|.+. +++.||||+++.. +....++|.+|+++|++++|||||+++|+|.+++..
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~ 90 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA--SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPL 90 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC--ChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEE
Confidence 57888999999999999999753 4788999999764 455678899999999999999999999999999999
Q ss_pred EEEEeecCCCChhhHhhhcc--------cCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcE
Q 002346 655 LLVYEYMPRGTLAQHLFEWH--------DHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRA 726 (933)
Q Consensus 655 ~lv~e~~~~gsL~~~l~~~~--------~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~ 726 (933)
++|||||++|+|.++|+... ......++|.+++.|+.|||+||+|||+ ++||||||||+|||+++++.+
T Consensus 91 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl~~~~~~ 167 (299)
T 4asz_A 91 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLV 167 (299)
T ss_dssp EEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCE
T ss_pred EEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCccCHhhEEECCCCcE
Confidence 99999999999999997632 1223569999999999999999999999 899999999999999999999
Q ss_pred EEecccccccCCCCCcee-ecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHH
Q 002346 727 KVADFGLVKNAPDGKYSV-ETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFR 804 (933)
Q Consensus 727 kl~DfGla~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~ 804 (933)
||+|||+|+......... .....||++|||||++.++.|+.++|||||||++|||+| |+.||......+ +..
T Consensus 168 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~---~~~--- 241 (299)
T 4asz_A 168 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE---VIE--- 241 (299)
T ss_dssp EECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH---HHH---
T ss_pred EECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH---HHH---
Confidence 999999998665443332 334579999999999999999999999999999999999 899998754322 222
Q ss_pred HHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhh
Q 002346 805 RVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVE 864 (933)
Q Consensus 805 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~ 864 (933)
.+.. +..+. .++.. ..++.+++.+||+.||++||+++|+++.|+++.+
T Consensus 242 ~i~~--~~~~~-~p~~~---------~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~ 289 (299)
T 4asz_A 242 CITQ--GRVLQ-RPRTC---------PQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAK 289 (299)
T ss_dssp HHHH--TCCCC-CCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHc--CCCCC-CCccc---------hHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence 1111 11111 11111 2357799999999999999999999999988754
No 3
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=1.6e-51 Score=447.59 Aligned_cols=261 Identities=30% Similarity=0.475 Sum_probs=207.3
Q ss_pred cCCccCCccccCCCeEEEEEEeC------CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCcee
Q 002346 581 DNFSEANILGRGGFGVVYGGELP------DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSER 654 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 654 (933)
++|.+.+.||+|+||.||+|.+. +++.||||+++.. +....++|.+|+++|++++|||||+++|+|.++...
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~ 118 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA--SESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPL 118 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC--SHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence 56778899999999999999764 4789999999764 455678899999999999999999999999999999
Q ss_pred EEEEeecCCCChhhHhhhcccC----------CCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCC
Q 002346 655 LLVYEYMPRGTLAQHLFEWHDH----------GYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDM 724 (933)
Q Consensus 655 ~lv~e~~~~gsL~~~l~~~~~~----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~ 724 (933)
++|||||++|+|.++++..... ...+++|.+++.|+.|||+||+|||+ ++||||||||+|||+++++
T Consensus 119 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NILl~~~~ 195 (329)
T 4aoj_A 119 LMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNCLVGQGL 195 (329)
T ss_dssp EEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTT
T ss_pred EEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecccccHhhEEECCCC
Confidence 9999999999999999764221 23469999999999999999999999 8999999999999999999
Q ss_pred cEEEecccccccCCCCCc-eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHH
Q 002346 725 RAKVADFGLVKNAPDGKY-SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTW 802 (933)
Q Consensus 725 ~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~ 802 (933)
.+||+|||+|+....... ...+...||+.|||||++.+..|+.++|||||||++|||+| |+.||......+ ...
T Consensus 196 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~---~~~- 271 (329)
T 4aoj_A 196 VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE---AID- 271 (329)
T ss_dssp EEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH---HHH-
T ss_pred cEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHH---HHH-
Confidence 999999999986654332 33345689999999999999999999999999999999999 899998654322 222
Q ss_pred HHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhh
Q 002346 803 FRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVE 864 (933)
Q Consensus 803 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~ 864 (933)
.+.. ....+ .++.. ..++.+++.+||+.||++||||+||++.|+.+.+
T Consensus 272 --~i~~-g~~~~--~p~~~---------~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~ 319 (329)
T 4aoj_A 272 --CITQ-GRELE--RPRAC---------PPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQ 319 (329)
T ss_dssp --HHHH-TCCCC--CCTTC---------CHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHH
T ss_pred --HHHc-CCCCC--Ccccc---------cHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhh
Confidence 1111 11111 11111 2357799999999999999999999999988754
No 4
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=2.4e-51 Score=441.76 Aligned_cols=259 Identities=24% Similarity=0.397 Sum_probs=209.8
Q ss_pred cCCccCCccccCCCeEEEEEEe------CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCcee
Q 002346 581 DNFSEANILGRGGFGVVYGGEL------PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSER 654 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 654 (933)
.++++.+.||+|+||+||+|.+ .+++.||||+++... .....++|.+|+.++++++|||||+++|+|.+++..
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~-~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~ 104 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA-EGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPL 104 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-C-CC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECccc-ChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEE
Confidence 3566778999999999999976 256889999997653 344567899999999999999999999999999999
Q ss_pred EEEEeecCCCChhhHhhhcccC-----------CCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCC
Q 002346 655 LLVYEYMPRGTLAQHLFEWHDH-----------GYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDD 723 (933)
Q Consensus 655 ~lv~e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~ 723 (933)
++|||||++|+|.++|+..... ....++|.++..|+.|||+||+|||+ ++||||||||+|||++++
T Consensus 105 ~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~~NILl~~~ 181 (308)
T 4gt4_A 105 SMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATRNVLVYDK 181 (308)
T ss_dssp EEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGG
T ss_pred EEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCCCCCCccccceEECCC
Confidence 9999999999999999753211 12469999999999999999999999 899999999999999999
Q ss_pred CcEEEecccccccCCCCCc-eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHH
Q 002346 724 MRAKVADFGLVKNAPDGKY-SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVT 801 (933)
Q Consensus 724 ~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~ 801 (933)
+.+||+|||+|+....... ...+...||++|||||++.++.|+.++|||||||++|||+| |+.||......+ +..
T Consensus 182 ~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~---~~~ 258 (308)
T 4gt4_A 182 LNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQD---VVE 258 (308)
T ss_dssp GCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHH---HHH
T ss_pred CCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHH---HHH
Confidence 9999999999986544332 23345689999999999999999999999999999999999 899998754322 222
Q ss_pred HHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhh
Q 002346 802 WFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGP 861 (933)
Q Consensus 802 ~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~ 861 (933)
.+ .. . ..+. ..+. ....+.+++.+||+.||++||+|+||++.|+.
T Consensus 259 ~i---~~-~-~~~~-~p~~---------~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a 303 (308)
T 4gt4_A 259 MI---RN-R-QVLP-CPDD---------CPAWVYALMIECWNEFPSRRPRFKDIHSRLRA 303 (308)
T ss_dssp HH---HT-T-CCCC-CCTT---------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred HH---Hc-C-CCCC-Cccc---------chHHHHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence 11 11 1 1111 1111 12457799999999999999999999999865
No 5
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=8.4e-52 Score=448.97 Aligned_cols=252 Identities=21% Similarity=0.375 Sum_probs=206.6
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEe
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 659 (933)
++|++++.||+|+||+||+|.. .+|+.||||++..........+.|.+|++++++++|||||++++++.+++..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 6899999999999999999954 579999999998876666777899999999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCC
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPD 739 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~ 739 (933)
||+||+|.+++... ....+++.+++.|+.||+.||+|||+ ++||||||||+|||++.++.+||+|||+|+....
T Consensus 104 y~~gg~L~~~i~~~---~~~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 177 (350)
T 4b9d_A 104 YCEGGDLFKRINAQ---KGVLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS 177 (350)
T ss_dssp CCTTCBHHHHHHHT---TTCCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTTEESCCCH
T ss_pred CCCCCcHHHHHHHc---CCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHHHEEECCCCCEEEcccccceeecC
Confidence 99999999999652 23568999999999999999999999 8999999999999999999999999999986653
Q ss_pred CCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccCC
Q 002346 740 GKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAIDP 819 (933)
Q Consensus 740 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 819 (933)
.. ......+||+.|||||++.+..|+.++|||||||++|||+||+.||......+ .+..+... ..+. +..
T Consensus 178 ~~-~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~------~~~~i~~~--~~~~-~~~ 247 (350)
T 4b9d_A 178 TV-ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKN------LVLKIISG--SFPP-VSL 247 (350)
T ss_dssp HH-HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH------HHHHHHHT--CCCC-CCT
T ss_pred Cc-ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH------HHHHHHcC--CCCC-CCc
Confidence 22 12344689999999999999999999999999999999999999998653221 12222221 1111 111
Q ss_pred CCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 820 NLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 820 ~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
.+ ..++.+++.+||+.||++|||++|+++
T Consensus 248 ~~---------s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 248 HY---------SYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp TS---------CHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred cC---------CHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 11 135779999999999999999999976
No 6
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=1.2e-50 Score=439.21 Aligned_cols=254 Identities=22% Similarity=0.380 Sum_probs=210.7
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEe
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 659 (933)
+.|++.+.||+|+||.||+|.. .+|+.||||++..... ...+.+.+|+.+|++++|||||++++++.+++..|+|||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~--~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmE 151 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ--QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME 151 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGC--SSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCch--hHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence 5699999999999999999955 5799999999976532 334578999999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCC
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPD 739 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~ 739 (933)
||++|+|.+++.. ..+++.++..++.||+.||+|||+ ++||||||||+|||++.++.+||+|||+|+....
T Consensus 152 y~~gg~L~~~l~~------~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 222 (346)
T 4fih_A 152 FLEGGALTDIVTH------TRMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK 222 (346)
T ss_dssp CCTTEEHHHHHHH------SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred CCCCCcHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEECCCCCEEEecCcCceecCC
Confidence 9999999999965 458999999999999999999999 8999999999999999999999999999987654
Q ss_pred CCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccCC
Q 002346 740 GKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAIDP 819 (933)
Q Consensus 740 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 819 (933)
... .....+||+.|||||++.+..|+.++||||+||++|||++|+.||....+.+ ... .+.... + +
T Consensus 223 ~~~-~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~---~~~---~i~~~~---~----~ 288 (346)
T 4fih_A 223 EVP-RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK---AMK---MIRDNL---P----P 288 (346)
T ss_dssp SSC-CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH---HHH---HHHHSS---C----C
T ss_pred CCC-cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH---HHH---HHHcCC---C----C
Confidence 332 2345789999999999999999999999999999999999999997653322 111 111111 0 1
Q ss_pred CCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 820 NLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 820 ~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
.+.. ......++.+++.+||+.||++|||++|+++ ++|..
T Consensus 289 ~~~~---~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~------Hp~~~ 328 (346)
T 4fih_A 289 RLKN---LHKVSPSLKGFLDRLLVRDPAQRATAAELLK------HPFLA 328 (346)
T ss_dssp CCSC---GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT------CGGGG
T ss_pred CCCc---cccCCHHHHHHHHHHcCCChhHCcCHHHHhc------CHhhc
Confidence 1110 0011245779999999999999999999976 67764
No 7
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=5.3e-51 Score=435.23 Aligned_cols=261 Identities=20% Similarity=0.331 Sum_probs=216.4
Q ss_pred cCCccCCccccCCCeEEEEEE-eCCCcEEEEEEeccccC-CchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 581 DNFSEANILGRGGFGVVYGGE-LPDGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
++|++.+.||+|+||+||+|. ..+|+.||||++.+... .....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 579999999999999999995 46799999999976532 2344678999999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||++||+|.+++.. .+.+++.++..++.||+.||+|||+ ++||||||||+|||++.++.+||+|||+|+...
T Consensus 112 Ey~~gG~L~~~i~~-----~~~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~ 183 (311)
T 4aw0_A 112 SYAKNGELLKYIRK-----IGSFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLS 183 (311)
T ss_dssp CCCTTEEHHHHHHH-----HSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred ecCCCCCHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEEcCCCCEEEEEcCCceecC
Confidence 99999999999976 2569999999999999999999999 899999999999999999999999999999765
Q ss_pred CCC-ceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 739 DGK-YSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 739 ~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
... .......+||+.|||||++.+..|+.++||||+||++|||+||+.||...... . .+..+......+++.+
T Consensus 184 ~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~---~---~~~~i~~~~~~~p~~~ 257 (311)
T 4aw0_A 184 PESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEG---L---IFAKIIKLEYDFPEKF 257 (311)
T ss_dssp TTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHH---H---HHHHHHHTCCCCCTTC
T ss_pred CCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH---H---HHHHHHcCCCCCCccc
Confidence 432 23345678999999999999999999999999999999999999999764322 1 2223333333333221
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
. .++.+++.+||+.||++||+++|+...-+-..++|+.
T Consensus 258 ----s---------~~~~dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~ 295 (311)
T 4aw0_A 258 ----F---------PKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFE 295 (311)
T ss_dssp ----C---------HHHHHHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGT
T ss_pred ----C---------HHHHHHHHHHccCCHhHCcChHHHcCCHHHHCCCCcC
Confidence 1 3567999999999999999999975433323467764
No 8
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=9.8e-50 Score=423.93 Aligned_cols=251 Identities=24% Similarity=0.386 Sum_probs=204.0
Q ss_pred ccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeee----CceeEEEE
Q 002346 584 SEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCIN----GSERLLVY 658 (933)
Q Consensus 584 ~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ 658 (933)
+..+.||+|+||.||+|.. .+++.||+|++..........++|.+|++++++++|||||++++++.+ +...|+||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 5567899999999999954 568999999998776666677889999999999999999999999865 34578999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCC--eEecCCCCCcEEecC-CCcEEEecccccc
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQS--FIHRDLKPSNILIGD-DMRAKVADFGLVK 735 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dik~~Nill~~-~~~~kl~DfGla~ 735 (933)
|||++|+|.+++.+ ...+++.++..++.||++||+|||+ ++ ||||||||+|||++. ++.+||+|||+|+
T Consensus 109 Ey~~gg~L~~~l~~-----~~~l~~~~~~~~~~qi~~aL~ylH~---~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~ 180 (290)
T 3fpq_A 109 ELMTSGTLKTYLKR-----FKVMKIKVLRSWCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT 180 (290)
T ss_dssp ECCCSCBHHHHHHH-----HSSCCHHHHHHHHHHHHHHHHHHHT---SSSCCCCCCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred eCCCCCCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCCCEEecccChhheeEECCCCCEEEEeCcCCE
Confidence 99999999999976 2569999999999999999999998 66 999999999999984 7999999999998
Q ss_pred cCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCc
Q 002346 736 NAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPK 815 (933)
Q Consensus 736 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (933)
...... ....+||+.|||||++.+ .|+.++|||||||++|||+||+.||........ + ...+. ....+.
T Consensus 181 ~~~~~~---~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~--~---~~~i~--~~~~~~ 249 (290)
T 3fpq_A 181 LKRASF---AKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQ--I---YRRVT--SGVKPA 249 (290)
T ss_dssp GCCTTS---BEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHH--H---HHHHT--TTCCCG
T ss_pred eCCCCc---cCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHH--H---HHHHH--cCCCCC
Confidence 654322 234689999999998864 699999999999999999999999975433211 1 11211 111122
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 816 AIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 816 ~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
.++.... .++.+++.+||+.||++|||++|+++ ++|..
T Consensus 250 ~~~~~~~---------~~~~~li~~~L~~dP~~R~s~~e~l~------Hp~~~ 287 (290)
T 3fpq_A 250 SFDKVAI---------PEVKEIIEGCIRQNKDERYSIKDLLN------HAFFQ 287 (290)
T ss_dssp GGGGCCC---------HHHHHHHHHHSCSSGGGSCCHHHHHT------SGGGC
T ss_pred CCCccCC---------HHHHHHHHHHccCChhHCcCHHHHhc------Ccccc
Confidence 2222211 35779999999999999999999986 66654
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=8.1e-50 Score=431.54 Aligned_cols=254 Identities=20% Similarity=0.296 Sum_probs=207.2
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEe
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 659 (933)
+.|++.++||+|+||.||+|.. .+|+.||||+++.... +.+|+.++++++|||||++++++.+++..|+|||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmE 130 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-------RVEELVACAGLSSPRIVPLYGAVREGPWVNIFME 130 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-------HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence 4678889999999999999964 5799999999976532 2479999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCC-cEEEecccccccCC
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDM-RAKVADFGLVKNAP 738 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~-~~kl~DfGla~~~~ 738 (933)
||+||+|.++++. .+.+++.++..++.||+.||+|||+ ++||||||||+|||++.++ ++||+|||+|+...
T Consensus 131 y~~gg~L~~~l~~-----~~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~ 202 (336)
T 4g3f_A 131 LLEGGSLGQLIKQ-----MGCLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHALCLQ 202 (336)
T ss_dssp CCTTCBHHHHHHH-----HSSCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTCEEC-
T ss_pred ccCCCcHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCceecccCHHHEEEeCCCCEEEEeeCCCCeEcc
Confidence 9999999999976 2569999999999999999999999 8999999999999999988 69999999998765
Q ss_pred CCCce----eecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCC
Q 002346 739 DGKYS----VETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIP 814 (933)
Q Consensus 739 ~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (933)
..... .....+||+.|||||++.+..|+.++|||||||++|||+||++||.......... .+.......
T Consensus 203 ~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~------~i~~~~~~~- 275 (336)
T 4g3f_A 203 PDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCL------KIASEPPPI- 275 (336)
T ss_dssp -----------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHH------HHHHSCCGG-
T ss_pred CCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHH------HHHcCCCCc-
Confidence 43221 1233579999999999999999999999999999999999999998755433221 111111111
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 815 KAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 815 ~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
..+.+.+. ..+.+++.+||+.||++|||+.|+++.|..++..
T Consensus 276 ~~~~~~~s---------~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~ 317 (336)
T 4g3f_A 276 REIPPSCA---------PLTAQAIQEGLRKEPVHRASAMELRRKVGKALQE 317 (336)
T ss_dssp GGSCTTSC---------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred hhcCccCC---------HHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhh
Confidence 11222222 4577999999999999999999999988776544
No 10
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=9.9e-50 Score=430.77 Aligned_cols=269 Identities=23% Similarity=0.327 Sum_probs=204.4
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCc----eeE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGS----ERL 655 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~~~ 655 (933)
.++|.+.+.||+|+||+||+|.+ +|+.||||++.... .....+.+|+..+.+++|||||+++++|.+++ ..+
T Consensus 2 ar~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~---~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~ 77 (303)
T 3hmm_A 2 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred CcEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccc---hhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEE
Confidence 35678889999999999999988 68999999986542 22223345666677889999999999998653 579
Q ss_pred EEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhcc-----CCCeEecCCCCCcEEecCCCcEEEec
Q 002346 656 LVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLA-----QQSFIHRDLKPSNILIGDDMRAKVAD 730 (933)
Q Consensus 656 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~Dik~~Nill~~~~~~kl~D 730 (933)
+|||||++|+|.++++. .+++|.++.+++.|+++||+|||+.+ ..+||||||||+|||++.++.+||+|
T Consensus 78 lV~Ey~~~gsL~~~l~~------~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~D 151 (303)
T 3hmm_A 78 LVSDYHEHGSLFDYLNR------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD 151 (303)
T ss_dssp EEEECCTTCBHHHHHHH------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECC
T ss_pred EEecCCCCCcHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEe
Confidence 99999999999999976 45899999999999999999999731 24999999999999999999999999
Q ss_pred ccccccCCCCCcee---ecccccccCcccccccCCC------CCCCccchHhHHHHHHHHHcCCCCCCCCCCch------
Q 002346 731 FGLVKNAPDGKYSV---ETRLAGTFGYLAPEYAATG------RVTTKIDVYAFGVVLMETITGRKALDDTMPDD------ 795 (933)
Q Consensus 731 fGla~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~------ 795 (933)
||+|+......... ....+||+.|||||++.+. .++.++|||||||++|||+||+.||.......
T Consensus 152 FGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~ 231 (303)
T 3hmm_A 152 LGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDL 231 (303)
T ss_dssp CTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTT
T ss_pred CCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhc
Confidence 99998655433222 2346899999999998654 46789999999999999999987764322110
Q ss_pred ---hhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhh
Q 002346 796 ---RAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVE 864 (933)
Q Consensus 796 ---~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~ 864 (933)
.... ........ ...++|.++......+....+.+++.+||+.||++||||+||++.|+++.+
T Consensus 232 ~~~~~~~-~~~~~~~~-----~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~ 297 (303)
T 3hmm_A 232 VPSDPSV-EEMRKVVC-----EQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp SCSSCCH-HHHHHHHT-----TSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ccccchH-HHHHHHHh-----cccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHH
Confidence 0011 11111111 112233333223334556678899999999999999999999999988764
No 11
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=1.8e-49 Score=417.90 Aligned_cols=247 Identities=26% Similarity=0.415 Sum_probs=193.0
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC-chhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG-NKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
++|++.+.||+|+||+||+|.. .+|+.||||++.+.... ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 5899999999999999999964 57999999999765433 334578999999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+ +|+|.+++.. ..++++.++..++.||+.||+|||+ ++|+||||||+|||+++++.+||+|||+|+...
T Consensus 93 Ey~-~g~L~~~l~~-----~~~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~ 163 (275)
T 3hyh_A 93 EYA-GNELFDYIVQ-----RDKMSEQEARRFFQQIISAVEYCHR---HKIVHRDLKPENLLLDEHLNVKIADFGLSNIMT 163 (275)
T ss_dssp ECC-CEEHHHHHHH-----SCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTCCEEECCSSCC----
T ss_pred eCC-CCCHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCChHHeEECCCCCEEEeecCCCeecC
Confidence 999 6899999965 2569999999999999999999999 899999999999999999999999999998665
Q ss_pred CCCceeecccccccCcccccccCCCCC-CCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAATGRV-TTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
... .....+||+.|||||++.+..+ +.++||||+||++|||+||+.||...... ..+..+......++..+
T Consensus 164 ~~~--~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~------~~~~~i~~~~~~~p~~~ 235 (275)
T 3hyh_A 164 DGN--FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIP------VLFKNISNGVYTLPKFL 235 (275)
T ss_dssp -------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHHHHTCCCCCTTS
T ss_pred CCC--ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHH------HHHHHHHcCCCCCCCCC
Confidence 432 2344689999999999988776 57999999999999999999999764321 12222232222222221
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
. .++.+++.+||+.||++|||++|+++
T Consensus 236 ----s---------~~~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 236 ----S---------PGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp ----C---------HHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ----C---------HHHHHHHHHHccCChhHCcCHHHHHc
Confidence 1 35679999999999999999999987
No 12
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=2.1e-49 Score=440.04 Aligned_cols=253 Identities=21% Similarity=0.367 Sum_probs=210.5
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEe
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 659 (933)
+.|++.+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|+.+|++++|||||++++++.+++..|+|||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~--~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmE 228 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRK--QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME 228 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTT--CSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccc--hhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEe
Confidence 5799999999999999999955 579999999997653 2334678999999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCC
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPD 739 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~ 739 (933)
||+||+|.+++.. ..+++.++..|+.||+.||+|||+ ++||||||||+|||++.+|.+||+|||+|+....
T Consensus 229 y~~gG~L~~~i~~------~~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~ 299 (423)
T 4fie_A 229 FLEGGALTDIVTH------TRMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK 299 (423)
T ss_dssp CCTTEEHHHHHHH------SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCEECCS
T ss_pred CCCCCcHHHHHhc------cCCCHHHHHHHHHHHHHHHHHHHH---CCeecccCCHHHEEEcCCCCEEEecCccceECCC
Confidence 9999999999965 458999999999999999999999 8999999999999999999999999999987654
Q ss_pred CCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcc-cC
Q 002346 740 GKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKA-ID 818 (933)
Q Consensus 740 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d 818 (933)
... .....+||+.|||||++.+..|+.++|||||||++|||++|+.||....+.+. .. .+.... .+.. ..
T Consensus 300 ~~~-~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~---~~---~i~~~~--~~~~~~~ 370 (423)
T 4fie_A 300 EVP-RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA---MK---MIRDNL--PPRLKNL 370 (423)
T ss_dssp SCC-CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH---HH---HHHHSC--CCCCSCT
T ss_pred CCc-cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHH---HH---HHHcCC--CCCCccc
Confidence 332 23456899999999999999999999999999999999999999976543221 11 111111 0000 00
Q ss_pred CCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 819 PNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 819 ~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
..+ ..++.+|+.+||+.||++|||++|+++ ++|..
T Consensus 371 ~~~---------s~~~~dli~~~L~~dP~~R~ta~ell~------Hp~~~ 405 (423)
T 4fie_A 371 HKV---------SPSLKGFLDRLLVRDPAQRATAAELLK------HPFLA 405 (423)
T ss_dssp TSS---------CHHHHHHHHHHSCSSTTTSCCHHHHTT------CGGGG
T ss_pred ccC---------CHHHHHHHHHHcCCChhHCcCHHHHhc------CHHhc
Confidence 111 135779999999999999999999976 67764
No 13
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=4.5e-50 Score=428.42 Aligned_cols=254 Identities=24% Similarity=0.351 Sum_probs=203.0
Q ss_pred cCCccCCccccCCCeEEEEEEe----CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEE
Q 002346 581 DNFSEANILGRGGFGVVYGGEL----PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLL 656 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 656 (933)
++|++.+.||+|+||+||+|+. ..++.||||++++.........++.+|++++++++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 5799999999999999999964 247899999998765444445578999999999999999999999999999999
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKN 736 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~ 736 (933)
||||++||+|.+++.+ .+.+++.++..++.||+.||+|||+ ++||||||||+|||++.++.+||+|||+|+.
T Consensus 104 vmEy~~gg~L~~~l~~-----~~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~ 175 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSK-----EVMFTEEDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKE 175 (304)
T ss_dssp EECCCTTCEEHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTSCEEEESSEEEEC
T ss_pred EEEcCCCCCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHeEEcCCCCEEeccccccee
Confidence 9999999999999976 2569999999999999999999999 8999999999999999999999999999986
Q ss_pred CCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcc
Q 002346 737 APDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKA 816 (933)
Q Consensus 737 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (933)
...... .....+||+.|||||++.+..|+.++||||+||++|||+||+.||......+ .+..+.......+..
T Consensus 176 ~~~~~~-~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~------~~~~i~~~~~~~p~~ 248 (304)
T 3ubd_A 176 SIDHEK-KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKE------TMTMILKAKLGMPQF 248 (304)
T ss_dssp -----C-CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCCCCCCTT
T ss_pred ccCCCc-cccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHH------HHHHHHcCCCCCCCc
Confidence 544322 2345689999999999999999999999999999999999999998653322 122233323222222
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCH-----HHHHHHHhhhhhhcCC
Q 002346 817 IDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDM-----GHAVNVLGPLVEQWKP 868 (933)
Q Consensus 817 ~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~-----~evl~~L~~~~~~~~~ 868 (933)
++ .++.+++.+||+.||++||++ +|+++ ++|..
T Consensus 249 ~s-------------~~~~~li~~~L~~dP~~R~ta~~~~~~eil~------Hp~f~ 286 (304)
T 3ubd_A 249 LS-------------PEAQSLLRMLFKRNPANRLGAGPDGVEEIKR------HSFFS 286 (304)
T ss_dssp SC-------------HHHHHHHHHHTCSSGGGSTTCSTTTHHHHHT------SGGGT
T ss_pred CC-------------HHHHHHHHHHcccCHHHCCCCCcCCHHHHHc------Ccccc
Confidence 21 357799999999999999985 45543 66764
No 14
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=3.4e-49 Score=432.53 Aligned_cols=273 Identities=25% Similarity=0.392 Sum_probs=218.6
Q ss_pred cHHHHHHHhcCCccCCccccCCCeEEEEEEeC------CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCC-CcceeE
Q 002346 572 SIEVLRQVTDNFSEANILGRGGFGVVYGGELP------DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRH-RHLVAL 644 (933)
Q Consensus 572 ~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l 644 (933)
+.+..+.-.++|++.+.||+|+||.||+|.+. .++.||||++.... .....++|.+|+++|.+++| ||||++
T Consensus 55 ~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~-~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 55 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA-THSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEcccc-ChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence 34444455689999999999999999999653 24689999997653 34456789999999999965 899999
Q ss_pred EeEeeeC-ceeEEEEeecCCCChhhHhhhcccC-----------CCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecC
Q 002346 645 LGYCING-SERLLVYEYMPRGTLAQHLFEWHDH-----------GYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRD 712 (933)
Q Consensus 645 ~~~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D 712 (933)
+|+|.+. ...++|||||++|+|.++|+..... ....++|.++..++.|||+||+|||+ ++|||||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~---~~iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSC
T ss_pred EEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhh---CCeecCc
Confidence 9999764 5689999999999999999763321 12458999999999999999999999 8999999
Q ss_pred CCCCcEEecCCCcEEEecccccccCCCCC-ceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCC
Q 002346 713 LKPSNILIGDDMRAKVADFGLVKNAPDGK-YSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDD 790 (933)
Q Consensus 713 ik~~Nill~~~~~~kl~DfGla~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~ 790 (933)
|||+|||+++++.+||+|||+|+...... ....+...||+.|||||++.++.|+.++|||||||++|||+| |+.||..
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~ 290 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 290 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred cCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999765443 334456789999999999999999999999999999999998 8999986
Q ss_pred CCCchhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 791 TMPDDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
...... +.. .+...... . ..... ..++.+++.+||+.||++|||++|+++.|+.+++.
T Consensus 291 ~~~~~~--~~~----~i~~g~~~-~-~p~~~---------~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 291 VKIDEE--FCR----RLKEGTRM-R-APDYT---------TPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp CCCSHH--HHH----HHHHTCCC-C-CCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCHHHH--HHH----HHHcCCCC-C-CCccC---------CHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHH
Confidence 543221 111 11111111 1 11111 13577999999999999999999999999888754
No 15
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=8.3e-47 Score=405.53 Aligned_cols=251 Identities=25% Similarity=0.384 Sum_probs=190.7
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCc-------
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGS------- 652 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------- 652 (933)
++|++++.||+|+||+||+|.. .+|+.||||+++... .....+++.+|++++++++|||||++++++.+.+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~-~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~ 83 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN-RELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP 83 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS-SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence 4699999999999999999964 579999999997653 3445678999999999999999999999987543
Q ss_pred -----eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEE
Q 002346 653 -----ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAK 727 (933)
Q Consensus 653 -----~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~k 727 (933)
..|+|||||++|+|.+++.... .....++..++.++.||++||+|||+ ++||||||||+|||++.++.+|
T Consensus 84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~--~~~~~~~~~~~~i~~qi~~al~ylH~---~~IiHRDlKp~NILl~~~~~vK 158 (299)
T 4g31_A 84 SSPKVYLYIQMQLCRKENLKDWMNGRC--TIEERERSVCLHIFLQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVK 158 (299)
T ss_dssp ---CEEEEEEEECCCSCCHHHHHHTCC--SGGGSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEE
T ss_pred cCCCcEEEEEEecCCCCcHHHHHHhcC--CCChhHHHHHHHHHHHHHHHHHHHHH---CcCccccCcHHHeEECCCCcEE
Confidence 3689999999999999997522 22346778899999999999999999 8999999999999999999999
Q ss_pred EecccccccCCCCCce-----------eecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchh
Q 002346 728 VADFGLVKNAPDGKYS-----------VETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDR 796 (933)
Q Consensus 728 l~DfGla~~~~~~~~~-----------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~ 796 (933)
|+|||+|+........ ..+..+||+.|||||++.+..|+.++|||||||++|||++ ||... .+.
T Consensus 159 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~--~~~ 233 (299)
T 4g31_A 159 VGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQ--MER 233 (299)
T ss_dssp ECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSH--HHH
T ss_pred EccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCc--cHH
Confidence 9999999865543211 1234579999999999999999999999999999999996 77532 111
Q ss_pred hHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 797 AHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
...+.... ....+ ...........+++.+||+.||++|||+.|+++
T Consensus 234 ---~~~~~~~~--~~~~p----------~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 234 ---VRTLTDVR--NLKFP----------PLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp ---HHHHHHHH--TTCCC----------HHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ---HHHHHHHh--cCCCC----------CCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 11111111 11111 122223345668999999999999999999976
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-45 Score=448.90 Aligned_cols=415 Identities=21% Similarity=0.276 Sum_probs=317.8
Q ss_pred CCccchHHHHHHHHHhcCCCCCCCCCCC---CCC--Cccc------------cceEeCCCCCEEEEEecCCCCccccCcc
Q 002346 23 TSLGDDGSVMLKLAQSLQNLPSDWSSTS---STG--YCEW------------TGINCDNSNRVTTISLAKSGLSGTLSPE 85 (933)
Q Consensus 23 ~~~~~d~~~l~~~~~~~~~~~~~w~~~~---~~~--~C~w------------~gv~c~~~~~v~~L~l~~~~l~~~~~~~ 85 (933)
+...+|+.||++||+++.+. +|+... ..+ +|.| .||+|+..++|+.|+|++++|+|.+|++
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~--~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~~ 342 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK--NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA 342 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG--GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECGG
T ss_pred ccchHHHHHHHHHHHHcCCC--CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCchH
Confidence 34457999999999999664 786543 223 4999 9999998899999999999999999999
Q ss_pred ccCCcccceeec-cccccccc-----------------------------------------------------------
Q 002346 86 ISSLTQLETLSF-QMNNIAGA----------------------------------------------------------- 105 (933)
Q Consensus 86 ~~~l~~L~~L~l-~~N~l~~~----------------------------------------------------------- 105 (933)
|++|++|++|+| ++|.++|.
T Consensus 343 l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~ 422 (876)
T 4ecn_A 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422 (876)
T ss_dssp GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCC
T ss_pred HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccc
Confidence 999999999999 77765443
Q ss_pred -----------------CC-CccCcCcCceeccccccccC------------------CCCCccc--CCCCCCEEEccCC
Q 002346 106 -----------------IP-SLANATSLQDIYLDNNNFTS------------------VPTGCFD--GLTNLQVLSLSDN 147 (933)
Q Consensus 106 -----------------~p-~~~~l~~L~~L~Ls~N~l~~------------------~~~~~~~--~l~~L~~L~Ls~N 147 (933)
+| .|.++++|++|+|++|+|++ +|.. ++ ++++|++|+|++|
T Consensus 423 l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N 501 (876)
T 4ecn_A 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNC 501 (876)
T ss_dssp CCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESC
T ss_pred cchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCC
Confidence 55 78889999999999999998 6655 55 9999999999999
Q ss_pred CCCCCCCCCccccCCccCCeeeccCcc-cCC-CCChhhcCCC-------CCCEEEccCCcCCCCCCc--cccc-cccchh
Q 002346 148 PNLAPWPFPNELTKSTSLTTLYMDNAN-IFG-LIPDFFDSFS-------NLQNLRLSYNNFTGSLPA--SFAK-SDIQNL 215 (933)
Q Consensus 148 ~~~~~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~L~~N~l~~~~p~--~~~~-~~l~~l 215 (933)
++.+ .+|..+.++++|+.|+|++|+ +++ .+|..++.++ +|++|+|++|+++ .+|. .+.. .+|+.|
T Consensus 502 ~l~~--~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 502 PNMT--QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLL 578 (876)
T ss_dssp TTCC--SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEE
T ss_pred CCCc--cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEE
Confidence 9888 688999999999999999998 888 7888776665 9999999999999 8888 7766 579999
Q ss_pred hcccccCCcccccccccCCccCcEEEecCCccCCCCCCCCCCCC-CCEEEccCCcccccCcccccCCCC--CCEEEccCc
Q 002346 216 WMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCES-LFDLSLRDNQLTGVVPASVISLPA--LLNISLQNN 292 (933)
Q Consensus 216 ~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~-L~~L~L~~N~l~~~~p~~l~~l~~--L~~L~Ls~N 292 (933)
++++|.+. .++.+..+++|+.|+|++|+++..++.+..+++ |+.|+|++|+|+ .+|..+..++. |+.|+|++|
T Consensus 579 ~Ls~N~l~---~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 579 DCVHNKVR---HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp ECTTSCCC---BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS
T ss_pred ECCCCCcc---cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC
Confidence 99999887 333788899999999999999965557888988 999999999999 78888877754 999999999
Q ss_pred cCccCCCCCC--------CCccEEeccCCcCCCCCCCCCCCC-Cch-----hhhhHhhhcccCC-C-------ccccCCC
Q 002346 293 KLQGPYPLFP--------SKVQKVSLDHNNFCKNSSDAGKPC-DPQ-----VTTLLQIAGDMGY-P-------AILSDSW 350 (933)
Q Consensus 293 ~l~~~~p~~~--------~~l~~L~l~~n~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~-~-------~~l~~~~ 350 (933)
+++|.+|.++ .+|+.|+|++|++...+...+..+ ..+ ...+..++..... . ..++.+.
T Consensus 655 ~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred cCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEE
Confidence 9998777543 267888888888875443211000 000 0000011111100 0 0333333
Q ss_pred CCCCCCCCCCcccc--CCCceeEEEccCccccCcCchhhcCcccCCeEeccc------CcccCCCCcccCCCCCcCEEec
Q 002346 351 EGNNACDGWPFVTC--SQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQ------NNLTGPIPDGLTKLASLQNLDV 422 (933)
Q Consensus 351 ~~~~~~~~~p~~~~--~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~------N~l~g~~p~~~~~l~~L~~l~l 422 (933)
..+|.+..+|..+. .+++|+.|+|++|++++ +|..++++++|+.|+|++ |++.+.+|..|..+++|+.|+|
T Consensus 735 Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 735 LRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp CCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred CCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 33445557888776 78888888888888887 777788888888888865 7777788888888888888888
Q ss_pred cCCcCcccCCC-CCCCcccccCCCCCCc
Q 002346 423 SNNNLSGKVPD-FGSNVKFTVSPGNPFI 449 (933)
Q Consensus 423 s~N~l~g~~p~-~~~~~~~~~~~~n~~~ 449 (933)
++|+| +.+|. +...++...+.+|++.
T Consensus 814 s~N~L-~~Ip~~l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 814 GSNDI-RKVDEKLTPQLYILDIADNPNI 840 (876)
T ss_dssp CSSCC-CBCCSCCCSSSCEEECCSCTTC
T ss_pred CCCCC-CccCHhhcCCCCEEECCCCCCC
Confidence 88888 55554 4455555556677664
No 17
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-45 Score=410.20 Aligned_cols=269 Identities=23% Similarity=0.337 Sum_probs=208.4
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeee------Cc
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCIN------GS 652 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~ 652 (933)
.++|++++.||+|+||+||+|.. .+|+.||||+++.........+.+.+|+++|++++|||||++++++.. .+
T Consensus 53 ~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~ 132 (398)
T 4b99_A 53 GDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK 132 (398)
T ss_dssp CSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred CCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence 46899999999999999999954 679999999998766555667789999999999999999999998764 35
Q ss_pred eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccc
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFG 732 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfG 732 (933)
..|+|||||+ |+|.+++.. ...+++.++..++.||+.||+|||+ ++||||||||+|||++.++.+||+|||
T Consensus 133 ~~~ivmE~~~-g~L~~~i~~-----~~~l~~~~~~~~~~qil~al~ylH~---~~iiHRDlKP~NIl~~~~~~~Ki~DFG 203 (398)
T 4b99_A 133 SVYVVLDLME-SDLHQIIHS-----SQPLTLEHVRYFLYQLLRGLKYMHS---AQVIHRDLKPSNLLVNENCELKIGDFG 203 (398)
T ss_dssp CEEEEEECCS-EEHHHHHTS-----SSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEEEeCCC-CCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH---CcCcCCCcCccccccCCCCCEEEeecc
Confidence 7899999995 789999854 3579999999999999999999999 899999999999999999999999999
Q ss_pred ccccCCCCC---ceeecccccccCcccccccCCC-CCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhh
Q 002346 733 LVKNAPDGK---YSVETRLAGTFGYLAPEYAATG-RVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLI 808 (933)
Q Consensus 733 la~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~ 808 (933)
+|+...... .......+||+.|+|||++.+. .++.++||||+||++|||++|++||......+.. ..+....
T Consensus 204 la~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l---~~I~~~~- 279 (398)
T 4b99_A 204 MARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQL---QLIMMVL- 279 (398)
T ss_dssp TCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHH---HHHHHHH-
T ss_pred eeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHH---HHHHHhc-
Confidence 998654322 1223457899999999998765 5699999999999999999999999875432221 1111111
Q ss_pred ccCCCCcc----------------cCCCCCCChh--hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCCC
Q 002346 809 SKENIPKA----------------IDPNLNLDEE--TIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKPA 869 (933)
Q Consensus 809 ~~~~~~~~----------------~d~~l~~~~~--~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~~ 869 (933)
+..+.. +.+....... ......++.+|+.+||+.||++|||++|+++ ++|...
T Consensus 280 --g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~------Hp~f~~ 350 (398)
T 4b99_A 280 --GTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR------HPFLAK 350 (398)
T ss_dssp --CCCCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT------SGGGTT
T ss_pred --CCCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc------CHhhCc
Confidence 111100 0000000000 0011245779999999999999999999876 777654
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-45 Score=442.80 Aligned_cols=417 Identities=21% Similarity=0.274 Sum_probs=320.0
Q ss_pred ccchHHHHHHHHHhcCCCCC-----------CCCCCCCCCCccc---cceEeCCCCCEEEEEecCCCCccccCccccCCc
Q 002346 25 LGDDGSVMLKLAQSLQNLPS-----------DWSSTSSTGYCEW---TGINCDNSNRVTTISLAKSGLSGTLSPEISSLT 90 (933)
Q Consensus 25 ~~~d~~~l~~~~~~~~~~~~-----------~w~~~~~~~~C~w---~gv~c~~~~~v~~L~l~~~~l~~~~~~~~~~l~ 90 (933)
...|+.||.+++.++.+..+ +|. .+.++|.| .||+|+..++|+.|+|++++++|.+|++|++|+
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~--~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN--FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCC--CSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCT
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC--CCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCc
Confidence 34699999999999866421 454 46789999 999998889999999999999999999999999
Q ss_pred ccceeecccc----------------------------------------------------------------------
Q 002346 91 QLETLSFQMN---------------------------------------------------------------------- 100 (933)
Q Consensus 91 ~L~~L~l~~N---------------------------------------------------------------------- 100 (933)
+|++|+|++|
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 9999999988
Q ss_pred --------cccccCCCccCcCcCceeccccccccC------------------CCCCccc--CCCCCCEEEccCCCCCCC
Q 002346 101 --------NIAGAIPSLANATSLQDIYLDNNNFTS------------------VPTGCFD--GLTNLQVLSLSDNPNLAP 152 (933)
Q Consensus 101 --------~l~~~~p~~~~l~~L~~L~Ls~N~l~~------------------~~~~~~~--~l~~L~~L~Ls~N~~~~~ 152 (933)
+++|+++.++++++|++|+|++|+|++ +|. .++ ++++|++|+|++|++.+
T Consensus 186 l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~- 263 (636)
T 4eco_A 186 TQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLT- 263 (636)
T ss_dssp TTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCS-
T ss_pred hhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCc-
Confidence 445633379999999999999999999 555 477 99999999999999888
Q ss_pred CCCCccccCCccCCeeeccCcc-cCC-CCChhhcCC------CCCCEEEccCCcCCCCCCc--cccc-cccchhhccccc
Q 002346 153 WPFPNELTKSTSLTTLYMDNAN-IFG-LIPDFFDSF------SNLQNLRLSYNNFTGSLPA--SFAK-SDIQNLWMNDQQ 221 (933)
Q Consensus 153 ~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~L~~N~l~~~~p~--~~~~-~~l~~l~l~~n~ 221 (933)
.+|..++++++|++|+|++|+ +++ .+|..++.+ ++|++|+|++|+++ .+|. .+.. ..|++|++++|.
T Consensus 264 -~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 264 -KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp -SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC
T ss_pred -cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc
Confidence 688999999999999999998 888 788888776 88999999999988 8887 6765 578888888887
Q ss_pred CCcccccccccCCccCcEEEecCCccCCCCCCCCCCCC-CCEEEccCCcccccCcccccCCC--CCCEEEccCccCccCC
Q 002346 222 LGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCES-LFDLSLRDNQLTGVVPASVISLP--ALLNISLQNNKLQGPY 298 (933)
Q Consensus 222 ~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~-L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~ 298 (933)
+. |.++.+..+++|+.|+|++|+++..+..+..+++ |+.|+|++|+++ .+|..+..++ +|+.|+|++|.+++.+
T Consensus 342 l~--g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 342 LE--GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp CE--EECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred Cc--cchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcc
Confidence 75 2223677778888888888888855556777777 888888888887 6777776654 7888888888888776
Q ss_pred CCCCC----------CccEEeccCCcCCCCCCCCCCCCC-ch-----hhhhHhhhcccCC--------CccccCCCCCCC
Q 002346 299 PLFPS----------KVQKVSLDHNNFCKNSSDAGKPCD-PQ-----VTTLLQIAGDMGY--------PAILSDSWEGNN 354 (933)
Q Consensus 299 p~~~~----------~l~~L~l~~n~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~--------~~~l~~~~~~~~ 354 (933)
|..+. +|+.|+|++|++...+...+..+. .+ ...+..++..... ...++.+...+|
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred hhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC
Confidence 65433 677777777777654432111000 00 0000011110000 003433334445
Q ss_pred CCCCCCcccc--CCCceeEEEccCccccCcCchhhcCcccCCeEec------ccCcccCCCCcccCCCCCcCEEeccCCc
Q 002346 355 ACDGWPFVTC--SQGRIITINLANKLLAGNISPAYANLTSLKNLYL------QQNNLTGPIPDGLTKLASLQNLDVSNNN 426 (933)
Q Consensus 355 ~~~~~p~~~~--~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L------~~N~l~g~~p~~~~~l~~L~~l~ls~N~ 426 (933)
.+..+|..+. .+++|+.|+|++|++++ +|..++++++|+.|+| ++|++.+.+|..+..+++|+.|+|++|+
T Consensus 499 ~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp CCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred cCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 5558998887 89999999999999998 8999999999999999 5688888999999999999999999999
Q ss_pred CcccCCC-CCCCcccccCCCCCCcCCC
Q 002346 427 LSGKVPD-FGSNVKFTVSPGNPFIGTN 452 (933)
Q Consensus 427 l~g~~p~-~~~~~~~~~~~~n~~~~~~ 452 (933)
| +.+|. +...++...+.+|++.|..
T Consensus 578 l-~~ip~~~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 578 I-RKVNEKITPNISVLDIKDNPNISID 603 (636)
T ss_dssp C-CBCCSCCCTTCCEEECCSCTTCEEE
T ss_pred C-CccCHhHhCcCCEEECcCCCCcccc
Confidence 9 55554 5566666677888887644
No 19
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=3.8e-45 Score=403.57 Aligned_cols=204 Identities=25% Similarity=0.400 Sum_probs=174.3
Q ss_pred HHHHHHhcCCccCCccccCCCeEEEEEEe----CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCcceeEEeEe
Q 002346 574 EVLRQVTDNFSEANILGRGGFGVVYGGEL----PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVALLGYC 648 (933)
Q Consensus 574 ~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~ 648 (933)
+.+..+.++|++.+.||+|+||+||+|.. ..++.||+|++.... ...++.+|+++++.+ +|||||++++++
T Consensus 14 ~~~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~----~~~~~~~E~~~l~~~~~h~nIv~l~~~~ 89 (361)
T 4f9c_A 14 EAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS----HPIRIAAELQCLTVAGGQDNVMGVKYCF 89 (361)
T ss_dssp HHSGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS----CHHHHHHHHHHHHHTCSBTTBCCCSEEE
T ss_pred HhcCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc----CHHHHHHHHHHHHHhcCCCCCceEEEEE
Confidence 34445678999999999999999999954 247889999986542 245788999999998 699999999999
Q ss_pred eeCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCC-CcEE
Q 002346 649 INGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDD-MRAK 727 (933)
Q Consensus 649 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~-~~~k 727 (933)
.+.+..|+||||+++|+|.+++. .+++.++..++.|++.||+|||+ ++||||||||+|||++.+ +.+|
T Consensus 90 ~~~~~~~lvmE~~~g~~L~~~~~--------~l~~~~~~~~~~qll~al~ylH~---~gIiHRDiKPeNiLl~~~~~~~k 158 (361)
T 4f9c_A 90 RKNDHVVIAMPYLEHESFLDILN--------SLSFQEVREYMLNLFKALKRIHQ---FGIVHRDVKPSNFLYNRRLKKYA 158 (361)
T ss_dssp EETTEEEEEEECCCCCCHHHHHT--------TCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEE
T ss_pred EECCEEEEEEeCCCcccHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCcCCHHHeEEeCCCCeEE
Confidence 99999999999999999999983 48999999999999999999999 899999999999999877 7999
Q ss_pred EecccccccCCCCCc---------------------------eeecccccccCcccccccCCC-CCCCccchHhHHHHHH
Q 002346 728 VADFGLVKNAPDGKY---------------------------SVETRLAGTFGYLAPEYAATG-RVTTKIDVYAFGVVLM 779 (933)
Q Consensus 728 l~DfGla~~~~~~~~---------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~~l~ 779 (933)
|+|||+|+...+... ...+..+||+.|+|||++.+. .|+.++||||+||++|
T Consensus 159 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ 238 (361)
T 4f9c_A 159 LVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFL 238 (361)
T ss_dssp ECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHH
T ss_pred ECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHH
Confidence 999999985543211 112345799999999998765 5899999999999999
Q ss_pred HHHcCCCCCCCCC
Q 002346 780 ETITGRKALDDTM 792 (933)
Q Consensus 780 elltG~~p~~~~~ 792 (933)
||++|+.||....
T Consensus 239 ell~G~~Pf~~~~ 251 (361)
T 4f9c_A 239 SLLSGRYPFYKAS 251 (361)
T ss_dssp HHHHTCSSSSCCS
T ss_pred HHHHCCCCCCCCC
Confidence 9999999997654
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.4e-44 Score=440.03 Aligned_cols=407 Identities=24% Similarity=0.372 Sum_probs=253.9
Q ss_pred hccCCccchHHHHHHHHHhcCCC--CCCCCCCCCCCCccccceEeCCCCCEEEEEecCCCCccc---cC-----------
Q 002346 20 LTTTSLGDDGSVMLKLAQSLQNL--PSDWSSTSSTGYCEWTGINCDNSNRVTTISLAKSGLSGT---LS----------- 83 (933)
Q Consensus 20 ~~~~~~~~d~~~l~~~~~~~~~~--~~~w~~~~~~~~C~w~gv~c~~~~~v~~L~l~~~~l~~~---~~----------- 83 (933)
+++.+.++|++||++||+++.+. .++|. .+++||.|.||+|+ .++|+.|+|+++++.|. +|
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~~l~~W~--~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKNLLPDWS--SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTTSSTTCC--TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred ccccCCHHHHHHHHHHHhhCCCcccccCCC--CCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 44445678999999999999754 35675 46789999999998 78999999999999886 44
Q ss_pred ------------ccccCCcccceeecccccccccCC---CccCcCcCceeccccccccCCCCCcc-cCCCCCCEEEccCC
Q 002346 84 ------------PEISSLTQLETLSFQMNNIAGAIP---SLANATSLQDIYLDNNNFTSVPTGCF-DGLTNLQVLSLSDN 147 (933)
Q Consensus 84 ------------~~~~~l~~L~~L~l~~N~l~~~~p---~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N 147 (933)
..|+.+++|++|+|++|.++|.+| .++++++|++|+|++|.+++..+..+ .++++|++|+|++|
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 467788999999999999988665 57888888888888888876544333 56666666666666
Q ss_pred CCCCCCC-----------------------CCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCC
Q 002346 148 PNLAPWP-----------------------FPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLP 204 (933)
Q Consensus 148 ~~~~~~~-----------------------~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 204 (933)
++.+..+ -...+.++++|++|+|++|++.+.+|. ++.+++|++|+|++|++++.+|
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHH
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCccc
Confidence 6543100 001125667777777777777777666 7777777777777777777777
Q ss_pred ccccc-cccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCCC-CCC-CCCCCEEEccCCcccccCcccccCC
Q 002346 205 ASFAK-SDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPD-LSK-CESLFDLSLRDNQLTGVVPASVISL 281 (933)
Q Consensus 205 ~~~~~-~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~~~-~~~L~~L~L~~N~l~~~~p~~l~~l 281 (933)
..+.. .+|++|++.+|.+... .+.. .+++|++|+|++|++++.+|. +.. +++|++|+|++|++++.+|..|..+
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~--~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 317 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGP--IPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEES--CCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred HHHhcCCCCCEEECCCCcccCc--cCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence 76655 5677777777765422 2222 456666666666666655543 333 3666666666666666666666666
Q ss_pred CCCCEEEccCccCccCCCC----CCCCccEEeccCCcCCCCCCCCCCCCCchhhhhH--------hhhcccC---CCccc
Q 002346 282 PALLNISLQNNKLQGPYPL----FPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLL--------QIAGDMG---YPAIL 346 (933)
Q Consensus 282 ~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---~~~~l 346 (933)
++|++|+|++|.++|.+|. ...+|+.|+|++|.+.+..+.....+......+. .++.... .+..-
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 6666666666666655552 1345566666666555433221100000000000 0000000 01111
Q ss_pred cCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCc
Q 002346 347 SDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNN 426 (933)
Q Consensus 347 ~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~ 426 (933)
...+.+|...+.+|..++.+++|+.|+|++|++++.+|..|+++++|+.|+|++|+++|.+|..+..+++|++|++++|+
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence 22333444444566666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CcccCCC
Q 002346 427 LSGKVPD 433 (933)
Q Consensus 427 l~g~~p~ 433 (933)
++|.+|.
T Consensus 478 l~~~~p~ 484 (768)
T 3rgz_A 478 LTGEIPS 484 (768)
T ss_dssp CCSCCCG
T ss_pred ccCcCCH
Confidence 6666553
No 21
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=3.5e-44 Score=415.17 Aligned_cols=250 Identities=22% Similarity=0.363 Sum_probs=202.2
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCc-hhHHHH---HHHHHHHHhcCCCcceeEEeEeeeCceeE
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGN-KGLSEF---QAEIAVLTKVRHRHLVALLGYCINGSERL 655 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~-~~~~~~---~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 655 (933)
++|++.+.||+|+||.||+|.. .+|+.||||++.+..... .....+ ..++.+++.++|||||++++++.+.+..|
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly 268 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 268 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence 6899999999999999999954 579999999997653221 122233 34466777789999999999999999999
Q ss_pred EEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 656 LVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 656 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
+||||++||+|.+++.. .+.+++..++.++.||+.||+|||+ ++||||||||+|||++.+|++||+|||+|+
T Consensus 269 lVmEy~~GGdL~~~l~~-----~~~l~E~~a~~y~~qIl~aL~yLH~---~gIiHRDLKPeNILld~~G~vKL~DFGlA~ 340 (689)
T 3v5w_A 269 FILDLMNGGDLHYHLSQ-----HGVFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLAC 340 (689)
T ss_dssp EEECCCCSCBHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred EEEecCCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCchHHeEEeCCCCEEecccceee
Confidence 99999999999999976 2569999999999999999999999 899999999999999999999999999998
Q ss_pred cCCCCCceeecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCC
Q 002346 736 NAPDGKYSVETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIP 814 (933)
Q Consensus 736 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (933)
...... ....+||+.|||||++.. ..|+.++||||+||++|||++|+.||......+.. ............++
T Consensus 341 ~~~~~~---~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~---~i~~~i~~~~~~~p 414 (689)
T 3v5w_A 341 DFSKKK---PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH---EIDRMTLTMAVELP 414 (689)
T ss_dssp ECSSCC---CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHH---HHHHHHHHCCCCCC
T ss_pred ecCCCC---CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHH---HHHHhhcCCCCCCC
Confidence 765432 244689999999999965 57999999999999999999999999764333222 22223333333333
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCC-----HHHHHH
Q 002346 815 KAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPD-----MGHAVN 857 (933)
Q Consensus 815 ~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs-----~~evl~ 857 (933)
..++ .++.+++.+||+.||++|++ ++|+.+
T Consensus 415 ~~~S-------------~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~ 449 (689)
T 3v5w_A 415 DSFS-------------PELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 449 (689)
T ss_dssp TTSC-------------HHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred ccCC-------------HHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence 2221 35679999999999999998 577654
No 22
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=1.4e-43 Score=389.20 Aligned_cols=286 Identities=37% Similarity=0.696 Sum_probs=238.2
Q ss_pred cHHHHHHHhcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeC
Q 002346 572 SIEVLRQVTDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCING 651 (933)
Q Consensus 572 ~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 651 (933)
+..++..++++|++.+.||+|+||.||+|...+++.||||++... .....+.+.+|+.+++.++||||+++++++.++
T Consensus 30 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 107 (321)
T 2qkw_B 30 PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPE--SSQGIEEFETEIETLSFCRHPHLVSLIGFCDER 107 (321)
T ss_dssp CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSC--CSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCT
T ss_pred cHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEeccc--ChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence 334455677899999999999999999999888999999998765 344567899999999999999999999999999
Q ss_pred ceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecc
Q 002346 652 SERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADF 731 (933)
Q Consensus 652 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~Df 731 (933)
+..++||||+++|+|.+++.... .....+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+||
T Consensus 108 ~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Df 183 (321)
T 2qkw_B 108 NEMILIYKYMENGNLKRHLYGSD-LPTMSMSWEQRLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDF 183 (321)
T ss_dssp TCCEEEEECCTTCBTGGGSSSSC-CCSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCSTTEEECTTCCEEECCC
T ss_pred CeEEEEEEcCCCCcHHHHHhccC-CCccccCHHHHHHHHHHHHHHHHHhcC---CCeecCCCCHHHEEECCCCCEEEeec
Confidence 99999999999999999996532 223469999999999999999999999 89999999999999999999999999
Q ss_pred cccccCCCCC-ceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhcc
Q 002346 732 GLVKNAPDGK-YSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISK 810 (933)
Q Consensus 732 Gla~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~ 810 (933)
|+++...... ........||+.|+|||++.+..++.++||||||+++|||++|+.||....+.+......|..... ..
T Consensus 184 g~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~-~~ 262 (321)
T 2qkw_B 184 GISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESH-NN 262 (321)
T ss_dssp TTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHH-TT
T ss_pred ccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhcc-cc
Confidence 9998654322 222334568999999999988899999999999999999999999998876665555555554432 23
Q ss_pred CCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 811 ENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 811 ~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
..+...+++.+. .....+....+.+++.+||+.||++||+++|+++.|+.+.+.
T Consensus 263 ~~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~ 316 (321)
T 2qkw_B 263 GQLEQIVDPNLA-DKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316 (321)
T ss_dssp TCCCSSSSSSCT-TCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred ccHHHhcChhhc-cccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence 445555665544 233456677899999999999999999999999999987643
No 23
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=4e-43 Score=411.17 Aligned_cols=258 Identities=23% Similarity=0.359 Sum_probs=213.4
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
.++|++.+.||+|+||.||+|.. .+|+.||+|++.... ....+.+.+|+.+|+.++|||||++++++.++...|+||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~--~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~ 233 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH--ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIY 233 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccc--hhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEE
Confidence 36899999999999999999954 579999999997652 344578899999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCC--CcEEEeccccccc
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDD--MRAKVADFGLVKN 736 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~--~~~kl~DfGla~~ 736 (933)
|||+||+|.+++... ...+++.++..++.||+.||+|||+ ++|+||||||+|||++.+ +.+||+|||+|+.
T Consensus 234 E~~~gg~L~~~i~~~----~~~l~e~~~~~~~~qi~~al~ylH~---~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~ 306 (573)
T 3uto_A 234 EFMSGGELFEKVADE----HNKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGLTAH 306 (573)
T ss_dssp ECCCCCBHHHHHTCT----TSCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCSSCEE
T ss_pred eecCCCcHHHHHHHh----CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCChhhccccCCCCCCEEEeeccceeE
Confidence 999999999998541 2469999999999999999999999 899999999999999854 8999999999998
Q ss_pred CCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcc
Q 002346 737 APDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKA 816 (933)
Q Consensus 737 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (933)
...... ....+||+.|||||++.+..|+.++||||+||++|||++|+.||......+. +..+.......+..
T Consensus 307 ~~~~~~--~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~------~~~i~~~~~~~~~~ 378 (573)
T 3uto_A 307 LDPKQS--VKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDET------LRNVKSCDWNMDDS 378 (573)
T ss_dssp CCTTSE--EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHH------HHHHHTTCCCCCSG
T ss_pred ccCCCc--eeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHH------HHHHHhCCCCCCcc
Confidence 765432 2345899999999999999999999999999999999999999986543221 22222222222222
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCCC
Q 002346 817 IDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKPA 869 (933)
Q Consensus 817 ~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~~ 869 (933)
..+.+. ..+.+|+.+||+.||++||+++|+++ ++|...
T Consensus 379 ~~~~~s---------~~~~dli~~~L~~dp~~R~t~~e~l~------Hpw~~~ 416 (573)
T 3uto_A 379 AFSGIS---------EDGKDFIRKLLLADPNTRMTIHQALE------HPWLTP 416 (573)
T ss_dssp GGTTSC---------HHHHHHHHTTSCSSGGGSCCHHHHHH------STTTSC
T ss_pred cccCCC---------HHHHHHHHHHccCChhHCcCHHHHhc------CcCcCC
Confidence 212222 35779999999999999999999986 677653
No 24
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=2.3e-43 Score=388.34 Aligned_cols=293 Identities=40% Similarity=0.692 Sum_probs=238.7
Q ss_pred CCceeecHHHHHHHhcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEE
Q 002346 566 GGNVAISIEVLRQVTDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALL 645 (933)
Q Consensus 566 ~~~~~~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~ 645 (933)
+....++..++....++|++.+.||+|+||.||+|...+|+.||||++..... ......+.+|+++++.++||||++++
T Consensus 15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~ 93 (326)
T 3uim_A 15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLR 93 (326)
T ss_dssp CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC------CCCHHHHHHHGGGTCCCTTBCCCC
T ss_pred CccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccC-chHHHHHHHHHHHHHhccCCCccceE
Confidence 34567888999999999999999999999999999888899999999976532 22234689999999999999999999
Q ss_pred eEeeeCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCc
Q 002346 646 GYCINGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMR 725 (933)
Q Consensus 646 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~ 725 (933)
+++..+...++||||+++|+|.+++.... ....++++..+..++.|++.||+|||+.+..+|+||||||+||+++.++.
T Consensus 94 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~ 172 (326)
T 3uim_A 94 GFCMTPTERLLVYPYMANGSVASCLRERP-ESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFE 172 (326)
T ss_dssp EEECCSSCCEEEEECCTTCBHHHHHHCCS-TTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCC
T ss_pred EEEecCCceEEEEEeccCCCHHHHHHhcc-ccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCC
Confidence 99999999999999999999999997632 23356999999999999999999999922229999999999999999999
Q ss_pred EEEecccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCC--CchhhHHHHHH
Q 002346 726 AKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTM--PDDRAHLVTWF 803 (933)
Q Consensus 726 ~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~--~~~~~~~~~~~ 803 (933)
+||+|||+++..............||+.|+|||++.+..++.++||||||+++|||++|+.||+... .........|.
T Consensus 173 ~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~ 252 (326)
T 3uim_A 173 AVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWV 252 (326)
T ss_dssp EEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHH
T ss_pred EEeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHH
Confidence 9999999998776555455556679999999999988889999999999999999999999996311 11222333444
Q ss_pred HHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhh
Q 002346 804 RRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPL 862 (933)
Q Consensus 804 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~ 862 (933)
.... .........+..+. .....+....+.+++.+|++.||++||+++|+++.|++.
T Consensus 253 ~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~ 309 (326)
T 3uim_A 253 KGLL-KEKKLEALVDVDLQ-GNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309 (326)
T ss_dssp TTTT-SSCCSTTSSCTTCT-TSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred HHHh-hchhhhhhcChhhc-cccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence 3322 23344455555444 334566778899999999999999999999999999753
No 25
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=2.8e-42 Score=375.78 Aligned_cols=266 Identities=30% Similarity=0.493 Sum_probs=208.2
Q ss_pred HhcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
..++|++.+.||+|+||.||+|.. +|+.||||++..........+++.+|++++++++||||+++++++......++||
T Consensus 35 ~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 113 (309)
T 3p86_A 35 PWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVT 113 (309)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEE
T ss_pred ChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEE
Confidence 357899999999999999999987 6899999999877666666788999999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCC--eEecCCCCCcEEecCCCcEEEeccccccc
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQS--FIHRDLKPSNILIGDDMRAKVADFGLVKN 736 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dik~~Nill~~~~~~kl~DfGla~~ 736 (933)
||+++|+|.+++.... ....+++..++.++.|+++||+|||+ ++ |+||||||+||+++.++.+||+|||+++.
T Consensus 114 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~i~~qi~~aL~~LH~---~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~ 188 (309)
T 3p86_A 114 EYLSRGSLYRLLHKSG--AREQLDERRRLSMAYDVAKGMNYLHN---RNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRL 188 (309)
T ss_dssp ECCTTCBHHHHHHSTT--HHHHSCHHHHHHHHHHHHHHHHHHHT---SSSCCCCTTCCGGGEEECTTCCEEECCCC----
T ss_pred ecCCCCcHHHHHhhcC--CCCCCCHHHHHHHHHHHHHHHHHHHc---CCCCEECCCCChhhEEEeCCCcEEECCCCCCcc
Confidence 9999999999996521 11348999999999999999999998 78 99999999999999999999999999975
Q ss_pred CCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcc
Q 002346 737 APDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKA 816 (933)
Q Consensus 737 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (933)
..... .......||+.|+|||++.+..++.++||||||+++|||++|+.||....+... ...... ......++
T Consensus 189 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~---~~~~~~-~~~~~~~~-- 261 (309)
T 3p86_A 189 KASTF-LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQV---VAAVGF-KCKRLEIP-- 261 (309)
T ss_dssp --------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHH---HHHHHH-SCCCCCCC--
T ss_pred ccccc-cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHh-cCCCCCCC--
Confidence 44322 123345799999999999999999999999999999999999999986543221 111110 11111111
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 817 IDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 817 ~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
..+ ...+.+++.+||+.+|++||+++++++.|+.+++...+
T Consensus 262 --~~~---------~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~p 302 (309)
T 3p86_A 262 --RNL---------NPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAVP 302 (309)
T ss_dssp --TTS---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC----
T ss_pred --ccC---------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCCC
Confidence 111 13577999999999999999999999999998876554
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.9e-42 Score=422.88 Aligned_cols=382 Identities=28% Similarity=0.385 Sum_probs=286.9
Q ss_pred CEEEEEecCCCCccccCccccCCcccceeecccccccccCC-C-ccCcCcCceeccccccccCCCCCcccCCC-CCCEEE
Q 002346 67 RVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-S-LANATSLQDIYLDNNNFTSVPTGCFDGLT-NLQVLS 143 (933)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~ 143 (933)
.++.|+|++|.+++.+|..|+.+++|++|+|++|.++|.+| . +..+++|++|+|++|.+++..+..+..++ +|++|+
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374 (768)
T ss_dssp TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence 45555555555555555555556666666666666655554 2 55556666666666666544444455554 566666
Q ss_pred ccCCCCCCCCCCCccccC--CccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccc-cccchhhcccc
Q 002346 144 LSDNPNLAPWPFPNELTK--STSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAK-SDIQNLWMNDQ 220 (933)
Q Consensus 144 Ls~N~~~~~~~~p~~~~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~l~~l~l~~n 220 (933)
|++|++.+ .+|..+.. +++|++|++++|++.+.+|..|+.+++|++|+|++|++++.+|..+.. ..|++|++.+|
T Consensus 375 Ls~N~l~~--~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 375 LSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp CCSSEEEE--ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred ccCCCcCC--CcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 66665554 34555554 677888888888888888888999999999999999999888888876 57888999988
Q ss_pred cCCcccccccccCCccCcEEEecCCccCCCCCC-CCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCC
Q 002346 221 QLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPD-LSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYP 299 (933)
Q Consensus 221 ~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 299 (933)
.+.... ...+..+++|+.|+|++|++++.+|. +..+++|+.|+|++|++++.+|.+++.+++|+.|+|++|+++|.+|
T Consensus 453 ~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 453 MLEGEI-PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp CCCSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred cccCcC-CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence 876332 34577889999999999999988774 8899999999999999999999999999999999999999999888
Q ss_pred CC---CCCccEEeccCCcCCCCCCCCCCCCCchh------------------------------------hhhHh-----
Q 002346 300 LF---PSKVQKVSLDHNNFCKNSSDAGKPCDPQV------------------------------------TTLLQ----- 335 (933)
Q Consensus 300 ~~---~~~l~~L~l~~n~~~~~~~~~~~~~~~~~------------------------------------~~~~~----- 335 (933)
.. ..+|+.|+|++|++.+..+.....+.... ..+..
T Consensus 532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (768)
T 3rgz_A 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 64 45789999999999876654322110000 00000
Q ss_pred ------------hhcccC-CCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCc
Q 002346 336 ------------IAGDMG-YPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNN 402 (933)
Q Consensus 336 ------------~~~~~~-~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~ 402 (933)
++..+. .......++++|+..+.+|..+++++.|+.|+|++|+++|.+|..|++|++|++|||++|+
T Consensus 612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp CSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred ccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 000011 1122345678889999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccCCCCCcCEEeccCCcCcccCCCCCCCcccc--cCCCCCCcCC
Q 002346 403 LTGPIPDGLTKLASLQNLDVSNNNLSGKVPDFGSNVKFT--VSPGNPFIGT 451 (933)
Q Consensus 403 l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~--~~~~n~~~~~ 451 (933)
++|.+|..+..+++|++|||++|+|+|.||+.++...+. ...|||..|.
T Consensus 692 l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp CEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEES
T ss_pred ccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcC
Confidence 999999999999999999999999999999876544443 4568887774
No 27
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=1.4e-41 Score=372.80 Aligned_cols=255 Identities=24% Similarity=0.402 Sum_probs=214.1
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
.++|++.+.||+|+||.||+|.. .+|+.||||++..........+++.+|+++++.++||||+++++++...+..++||
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 93 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM 93 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence 36899999999999999999965 68999999999877666666788999999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+++|+|.+++... ..+++.++..++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||+++...
T Consensus 94 e~~~~~~L~~~l~~~-----~~l~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 165 (328)
T 3fe3_A 94 EYASGGEVFDYLVAH-----GRMKEKEARSKFRQIVSAVQYCHQ---KRIVHRDLKAENLLLDADMNIKIADFGFSNEFT 165 (328)
T ss_dssp CCCTTCBHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSTTCCGGGS
T ss_pred ECCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCCHHHEEEcCCCCEEEeeccCceecC
Confidence 999999999999662 458999999999999999999999 899999999999999999999999999998665
Q ss_pred CCCceeecccccccCcccccccCCCCCC-CccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAATGRVT-TKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
... ......||+.|+|||++.+..+. .++||||+||++|||++|+.||....... ............+..+
T Consensus 166 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~------~~~~i~~~~~~~p~~~ 237 (328)
T 3fe3_A 166 VGG--KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKE------LRERVLRGKYRIPFYM 237 (328)
T ss_dssp SSC--GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCCCCCCTTS
T ss_pred CCC--ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHH------HHHHHHhCCCCCCCCC
Confidence 432 23456899999999999887765 79999999999999999999998653221 1222222222222211
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCCC
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKPA 869 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~~ 869 (933)
...+.+++.+|++.||.+|||++|+++ ++|...
T Consensus 238 -------------s~~~~~li~~~L~~dP~~R~t~~eil~------h~~~~~ 270 (328)
T 3fe3_A 238 -------------STDCENLLKRFLVLNPIKRGTLEQIMK------DRWINA 270 (328)
T ss_dssp -------------CHHHHHHHHHHCCSSTTTSCCHHHHTT------CTTTTT
T ss_pred -------------CHHHHHHHHHHCCCChhHCcCHHHHhc------CHhhcC
Confidence 135679999999999999999999986 666643
No 28
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=3.5e-41 Score=365.24 Aligned_cols=250 Identities=22% Similarity=0.380 Sum_probs=207.1
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
.++|++.+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|+.++++++||||+++++++..++..++||
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 96 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQ--QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM 96 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGG--CSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeeccc--ccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEE
Confidence 46899999999999999999964 679999999987653 333567899999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+++|+|.+++.. ..+++.+++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||++....
T Consensus 97 e~~~~~~L~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 167 (297)
T 3fxz_A 97 EYLAGGSLTDVVTE------TCMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT 167 (297)
T ss_dssp ECCTTCBHHHHHHH------SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred ECCCCCCHHHHHhh------cCCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEECCCCCEEEeeCCCceecC
Confidence 99999999999965 358999999999999999999999 899999999999999999999999999988665
Q ss_pred CCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccC
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAID 818 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 818 (933)
.... ......||+.|+|||++.+..++.++|||||||++|||++|+.||....+...... ... ....... ..
T Consensus 168 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~---~~~--~~~~~~~--~~ 239 (297)
T 3fxz_A 168 PEQS-KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL---IAT--NGTPELQ--NP 239 (297)
T ss_dssp STTC-CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHH---HHH--HCSCCCS--CG
T ss_pred Cccc-ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH---HHh--CCCCCCC--Cc
Confidence 4332 23446799999999999999999999999999999999999999976543222111 111 1011100 00
Q ss_pred CCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 819 PNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 819 ~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
......+.+++.+||+.||++||+++|+++
T Consensus 240 ---------~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 240 ---------EKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp ---------GGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ---------cccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 111235779999999999999999999986
No 29
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=375.53 Aligned_cols=252 Identities=26% Similarity=0.453 Sum_probs=200.1
Q ss_pred HHhcCCccCCccccCCCeEEEEEE-eCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEE
Q 002346 578 QVTDNFSEANILGRGGFGVVYGGE-LPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLL 656 (933)
Q Consensus 578 ~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 656 (933)
.+.++|++.+.||+|+||.||+|. ..+|+.||||++...... ...+.+.+|++++++++||||+++++++...+..++
T Consensus 7 ~l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~-~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~l 85 (347)
T 3zgw_A 7 ELLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLG-SDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFM 85 (347)
T ss_dssp TTTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC----CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred HHhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccc-hHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEE
Confidence 346789999999999999999996 467999999999765432 234578999999999999999999999999999999
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKN 736 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~ 736 (933)
||||+++|+|.+++... ..+++.+++.++.|++.||+|||+ ++|+||||||+||++++++.+||+|||++..
T Consensus 86 v~E~~~gg~L~~~l~~~-----~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~kL~DFG~a~~ 157 (347)
T 3zgw_A 86 VLEYCPGGELFDYIISQ-----DRLSEEETRVVFRQIVSAVAYVHS---QGYAHRDLKPENLLFDEYHKLKLIDFGLCAK 157 (347)
T ss_dssp EEECCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred EEeCCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCccHHHEEEcCCCCEEEEeccCccc
Confidence 99999999999999652 458999999999999999999999 8999999999999999999999999999886
Q ss_pred CCCCCceeecccccccCcccccccCCCCC-CCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCc
Q 002346 737 APDGKYSVETRLAGTFGYLAPEYAATGRV-TTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPK 815 (933)
Q Consensus 737 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (933)
.............||+.|+|||++.+..+ +.++||||+||++|||++|+.||...... .....+.......+.
T Consensus 158 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~------~~~~~i~~~~~~~p~ 231 (347)
T 3zgw_A 158 PKGNKDYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVM------ALYKKIMRGKYDVPK 231 (347)
T ss_dssp --------------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHHHHTCCCCCT
T ss_pred ccCCCCccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHH------HHHHHHHcCCCCCCC
Confidence 55443333445689999999999988775 89999999999999999999999764322 112222222222222
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 816 AIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 816 ~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
.+ . ..+.+++.+||+.||++|||++|+++
T Consensus 232 ~~----s---------~~~~~li~~~L~~dP~~Rps~~eil~ 260 (347)
T 3zgw_A 232 WL----S---------PSSILLLQQMLQVDPKKRISMKNLLN 260 (347)
T ss_dssp TC----C---------HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CC----C---------HHHHHHHHHHcccCHhHCcCHHHHhc
Confidence 11 1 34678999999999999999999986
No 30
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=1.4e-41 Score=372.92 Aligned_cols=266 Identities=25% Similarity=0.383 Sum_probs=209.5
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCc----eeE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGS----ERL 655 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~~~ 655 (933)
.++|++.+.||+|+||.||+|.. .++.||||++... ......+.+|+.++++++|||||++++++..+. ..+
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 98 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQ---DKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLW 98 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred hhhchhhheecccCceEEEEEEE-CCCEEEEEEeecC---chHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEE
Confidence 36899999999999999999987 4899999999754 233456677999999999999999999998743 469
Q ss_pred EEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCC----------CeEecCCCCCcEEecCCCc
Q 002346 656 LVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQ----------SFIHRDLKPSNILIGDDMR 725 (933)
Q Consensus 656 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~----------~ivH~Dik~~Nill~~~~~ 725 (933)
+||||+++|+|.+++.. ..+++.+++.++.|+++||+|||+ . +|+||||||+||+++.++.
T Consensus 99 lv~e~~~~g~L~~~l~~------~~~~~~~~~~i~~qi~~al~~LH~---~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~ 169 (322)
T 3soc_A 99 LITAFHEKGSLSDFLKA------NVVSWNELCHIAETMARGLAYLHE---DIPGLKDGHKPAISHRDIKSKNVLLKNNLT 169 (322)
T ss_dssp EEEECCTTCBHHHHHHH------CCBCHHHHHHHHHHHHHHHHHHTC---CEEEETTEEECEEECSCCSGGGEEECTTCC
T ss_pred EEEecCCCCCHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHh---hccccccccCCCEEeCCCChHhEEECCCCe
Confidence 99999999999999965 458999999999999999999998 6 9999999999999999999
Q ss_pred EEEecccccccCCCCCce-eecccccccCcccccccCC-----CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhh--
Q 002346 726 AKVADFGLVKNAPDGKYS-VETRLAGTFGYLAPEYAAT-----GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRA-- 797 (933)
Q Consensus 726 ~kl~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~-- 797 (933)
+||+|||+++........ ......||+.|+|||++.+ ..++.++|||||||++|||+||+.||.........
T Consensus 170 ~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~ 249 (322)
T 3soc_A 170 ACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPF 249 (322)
T ss_dssp EEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTT
T ss_pred EEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccch
Confidence 999999999765543322 2334679999999999876 35667899999999999999999999764332111
Q ss_pred --------HHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhh
Q 002346 798 --------HLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVE 864 (933)
Q Consensus 798 --------~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~ 864 (933)
....+...... . ...+.+...........++.+++.+||+.||++|||+.|+++.|+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~ 318 (322)
T 3soc_A 250 EEEIGQHPSLEDMQEVVVH-K-----KKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQR 318 (322)
T ss_dssp HHHHCSSCCHHHHHHHHTT-S-----CCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred hhhhccCCchhhhhhhhhc-c-----cCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 11111111111 1 1112222111223445668899999999999999999999999998754
No 31
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.5e-41 Score=367.24 Aligned_cols=260 Identities=27% Similarity=0.434 Sum_probs=212.9
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
.++|.+.+.||+|+||.||+|.. .+++.||+|++... .....+.|.+|++++++++||||+++++++.++...++||
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 86 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF--DEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFIT 86 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEE
Confidence 36789999999999999999965 56899999988654 4556788999999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+++|+|.+++... ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||+++...
T Consensus 87 e~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 159 (310)
T 3s95_A 87 EYIKGGTLRGIIKSM----DSQYPWSQRVSFAKDIASGMAYLHS---MNIIHRDLNSHNCLVRENKNVVVADFGLARLMV 159 (310)
T ss_dssp ECCTTCBHHHHHHHC----CTTSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEECTTSCEEECCCTTCEECC
T ss_pred EecCCCcHHHHHHhc----cCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCcCeEEECCCCCEEEeecccceecc
Confidence 999999999999652 2468999999999999999999999 899999999999999999999999999998654
Q ss_pred CCCcee-------------ecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhh---HHHHH
Q 002346 739 DGKYSV-------------ETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRA---HLVTW 802 (933)
Q Consensus 739 ~~~~~~-------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~---~~~~~ 802 (933)
...... .....||+.|+|||++.+..++.++||||||+++|||++|..|+....+.... .....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~ 239 (310)
T 3s95_A 160 DEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGF 239 (310)
T ss_dssp --------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHH
T ss_pred cccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhcc
Confidence 432211 11457999999999999999999999999999999999999998765432211 11111
Q ss_pred HHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcC
Q 002346 803 FRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWK 867 (933)
Q Consensus 803 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~ 867 (933)
... ..+. ... ..+.+++.+|++.||++||++.++++.|+.+.....
T Consensus 240 ~~~------~~~~----~~~---------~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~ 285 (310)
T 3s95_A 240 LDR------YCPP----NCP---------PSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLA 285 (310)
T ss_dssp HHH------TCCT----TCC---------TTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred ccc------cCCC----CCC---------HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhcc
Confidence 110 0111 111 246789999999999999999999999998876543
No 32
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=6.1e-41 Score=362.85 Aligned_cols=263 Identities=21% Similarity=0.376 Sum_probs=208.1
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC-CchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
.++|++.+.||+|+||.||+|.. .+++.||+|++..... .....+.+.+|+.++++++||||+++++++.+++..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 46899999999999999999964 5789999999865432 334467899999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+++++|.+++... .++++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||+++..
T Consensus 90 ~e~~~g~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~ 161 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESH-----GPLSVDTAINFTNQILDGIKHAHD---MRIVHRDIKPQNILIDSNKTLKIFDFGIAKAL 161 (294)
T ss_dssp EECCCSCBHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCSSSTTC
T ss_pred EeCCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEEeCCCcccc
Confidence 9999999999999652 468999999999999999999999 89999999999999999999999999999876
Q ss_pred CCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhc-cCCCCcc
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLIS-KENIPKA 816 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 816 (933)
............||+.|+|||.+.+..++.++||||||+++|||++|+.||........ ....... .......
T Consensus 162 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~------~~~~~~~~~~~~~~~ 235 (294)
T 4eqm_A 162 SETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSI------AIKHIQDSVPNVTTD 235 (294)
T ss_dssp -------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHH------HHHHHSSCCCCHHHH
T ss_pred ccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHH------HHHHhhccCCCcchh
Confidence 55443334456799999999999998999999999999999999999999976543211 1111111 1111111
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCC-CHHHHHHHHhhhhhh
Q 002346 817 IDPNLNLDEETIESIYRVAELAGHCTAREPQQRP-DMGHAVNVLGPLVEQ 865 (933)
Q Consensus 817 ~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RP-s~~evl~~L~~~~~~ 865 (933)
+.+.+ ...+.+++.+|++.||++|| +++++.+.|+.+...
T Consensus 236 ~~~~~---------~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~ 276 (294)
T 4eqm_A 236 VRKDI---------PQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHE 276 (294)
T ss_dssp SCTTS---------CHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSS
T ss_pred cccCC---------CHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhh
Confidence 11112 24577999999999999999 899999888776543
No 33
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=1.1e-40 Score=372.72 Aligned_cols=264 Identities=27% Similarity=0.443 Sum_probs=214.1
Q ss_pred hcCCccCCccccCCCeEEEEEEe--------CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCcceeEEeEeee
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL--------PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVALLGYCIN 650 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~--------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 650 (933)
.++|++.+.||+|+||.||+|.. .++..||||+++... .....+++.+|+.+++++ +||||+++++++..
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~ 158 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA-TEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 158 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC-BHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc-CHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEcc
Confidence 46899999999999999999964 245679999997653 345567899999999999 89999999999999
Q ss_pred CceeEEEEeecCCCChhhHhhhcccC-----------CCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEE
Q 002346 651 GSERLLVYEYMPRGTLAQHLFEWHDH-----------GYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNIL 719 (933)
Q Consensus 651 ~~~~~lv~e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nil 719 (933)
++..++||||+++|+|.+++...... ....+++.+++.++.||++||+|||+ ++|+||||||+|||
T Consensus 159 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIl 235 (370)
T 2psq_A 159 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVL 235 (370)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCeeccccchhhEE
Confidence 99999999999999999999763311 12458999999999999999999999 89999999999999
Q ss_pred ecCCCcEEEecccccccCCCCCc-eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhh
Q 002346 720 IGDDMRAKVADFGLVKNAPDGKY-SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRA 797 (933)
Q Consensus 720 l~~~~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~ 797 (933)
++.++.+||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||......+.
T Consensus 236 l~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~- 314 (370)
T 2psq_A 236 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEEL- 314 (370)
T ss_dssp ECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH-
T ss_pred ECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHH-
Confidence 99999999999999986654332 22233467889999999998999999999999999999999 9999976543322
Q ss_pred HHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 798 HLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
...+ . ... ....... ....+.+++.+||+.+|++||++.|+++.|+.++..
T Consensus 315 --~~~~---~--~~~-~~~~~~~---------~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~ 365 (370)
T 2psq_A 315 --FKLL---K--EGH-RMDKPAN---------CTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTL 365 (370)
T ss_dssp --HHHH---H--TTC-CCCCCTT---------SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --HHHH---h--cCC-CCCCCCC---------CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 1111 1 111 1111111 123577999999999999999999999999988654
No 34
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=2.4e-40 Score=361.04 Aligned_cols=285 Identities=35% Similarity=0.602 Sum_probs=230.5
Q ss_pred ceeecHHHHHHHhcCCccC------CccccCCCeEEEEEEeCCCcEEEEEEeccccC--CchhHHHHHHHHHHHHhcCCC
Q 002346 568 NVAISIEVLRQVTDNFSEA------NILGRGGFGVVYGGELPDGTKIAVKRMESNTM--GNKGLSEFQAEIAVLTKVRHR 639 (933)
Q Consensus 568 ~~~~~~~~l~~~~~~~~~~------~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~ 639 (933)
...|+++++..++++|... +.||+|+||.||+|.. +++.||||++..... .....+.+.+|+.++++++||
T Consensus 12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 90 (307)
T 2nru_A 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE 90 (307)
T ss_dssp CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence 3568899999999999887 8999999999999987 689999999875431 234467899999999999999
Q ss_pred cceeEEeEeeeCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEE
Q 002346 640 HLVALLGYCINGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNIL 719 (933)
Q Consensus 640 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nil 719 (933)
||+++++++.+++..++||||+++++|.+++..... ..++++..++.++.|+++||+|||+ ++|+||||||+||+
T Consensus 91 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dlkp~Nil 165 (307)
T 2nru_A 91 NLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDG--TPPLSWHMRCKIAQGAANGINFLHE---NHHIHRDIKSANIL 165 (307)
T ss_dssp TBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGG--CCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEE
T ss_pred CeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccC--CCCCCHHHHHHHHHHHHHHHHHHhc---CCeecCCCCHHHEE
Confidence 999999999999999999999999999999965322 3569999999999999999999999 89999999999999
Q ss_pred ecCCCcEEEecccccccCCCCCc-eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhH
Q 002346 720 IGDDMRAKVADFGLVKNAPDGKY-SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAH 798 (933)
Q Consensus 720 l~~~~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~ 798 (933)
++.++.+||+|||+++....... .......||+.|+|||.+.+ .++.++||||||+++|||++|+.||.........
T Consensus 166 i~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~- 243 (307)
T 2nru_A 166 LDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLL- 243 (307)
T ss_dssp ECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBT-
T ss_pred EcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHH-
Confidence 99999999999999986654322 22344679999999998864 5899999999999999999999999865432211
Q ss_pred HHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhh
Q 002346 799 LVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLV 863 (933)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~ 863 (933)
..+..........+...+++.+. .........+.+++.+|++.+|++||++.++++.|+++.
T Consensus 244 -~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~ 305 (307)
T 2nru_A 244 -LDIKEEIEDEEKTIEDYIDKKMN--DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT 305 (307)
T ss_dssp -THHHHHHHTTSCCHHHHSCSSCS--CCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC
T ss_pred -HHHHHHhhhhhhhhhhhcccccc--ccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHh
Confidence 11222222222223333443332 233455677889999999999999999999999998764
No 35
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=7.6e-41 Score=376.59 Aligned_cols=258 Identities=22% Similarity=0.307 Sum_probs=209.7
Q ss_pred HHHHHHhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC-CchhHHHHHHHHHHHHhcCCCcceeEEeEeeeC
Q 002346 574 EVLRQVTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKVRHRHLVALLGYCING 651 (933)
Q Consensus 574 ~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 651 (933)
..++...++|++.+.||+|+||.||+|.. .+++.||+|++.+... .....+.+.+|+.+++.++|||||++++++.++
T Consensus 62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~ 141 (410)
T 3v8s_A 62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD 141 (410)
T ss_dssp HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEEC
Confidence 44455578999999999999999999965 4689999999876321 112234588999999999999999999999999
Q ss_pred ceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecc
Q 002346 652 SERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADF 731 (933)
Q Consensus 652 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~Df 731 (933)
...++||||+++|+|.+++.. ..+++..++.++.||+.||+|||+ ++|+||||||+|||++.++.+||+||
T Consensus 142 ~~~~lV~E~~~gg~L~~~l~~------~~~~e~~~~~~~~qi~~aL~~LH~---~givHrDLKp~NILl~~~g~ikL~DF 212 (410)
T 3v8s_A 142 RYLYMVMEYMPGGDLVNLMSN------YDVPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHLKLADF 212 (410)
T ss_dssp SEEEEEECCCTTEEHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCC
T ss_pred CEEEEEEeCCCCCcHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeeECCCCCEEEecc
Confidence 999999999999999999965 358999999999999999999999 89999999999999999999999999
Q ss_pred cccccCCCCCceeecccccccCcccccccCCCC----CCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHh
Q 002346 732 GLVKNAPDGKYSVETRLAGTFGYLAPEYAATGR----VTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVL 807 (933)
Q Consensus 732 Gla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~ 807 (933)
|+++.............+||+.|+|||++.+.. ++.++|||||||++|||++|+.||........ +..+.
T Consensus 213 G~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~------~~~i~ 286 (410)
T 3v8s_A 213 GTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGT------YSKIM 286 (410)
T ss_dssp TTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHH------HHHHH
T ss_pred ceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhH------HHHHH
Confidence 999877655544445678999999999997654 88999999999999999999999986533221 11111
Q ss_pred hcc--CCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCC--CCCHHHHHH
Q 002346 808 ISK--ENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQ--RPDMGHAVN 857 (933)
Q Consensus 808 ~~~--~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~--RPs~~evl~ 857 (933)
... ...+. +..+. ..+.+++.+|++.+|.+ ||+++|+++
T Consensus 287 ~~~~~~~~p~--~~~~s---------~~~~~li~~lL~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 287 NHKNSLTFPD--DNDIS---------KEAKNLICAFLTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp THHHHCCCCT--TCCCC---------HHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred hccccccCCC--ccccc---------HHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence 111 11111 11111 35779999999999988 999999986
No 36
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=2.1e-40 Score=353.86 Aligned_cols=257 Identities=28% Similarity=0.441 Sum_probs=214.7
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEe
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 659 (933)
.++|++.+.||+|+||.||+|+..++..||||++..... ..+++.+|++++.+++||||+++++++.++...++|||
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 83 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM---SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTE 83 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB---CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC---cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEE
Confidence 468999999999999999999988888999999976532 34679999999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCC
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPD 739 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~ 739 (933)
|+++++|.+++... ...+++.+++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||++.....
T Consensus 84 ~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~ 156 (268)
T 3sxs_A 84 YISNGCLLNYLRSH----GKGLEPSQLLEMCYDVCEGMAFLES---HQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLD 156 (268)
T ss_dssp CCTTCBHHHHHHHH----GGGCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCSGGGEEECTTCCEEECCTTCEEECCT
T ss_pred ccCCCcHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCcCcceEEECCCCCEEEccCccceecch
Confidence 99999999999662 2458999999999999999999999 8999999999999999999999999999987766
Q ss_pred CCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccC
Q 002346 740 GKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENIPKAID 818 (933)
Q Consensus 740 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 818 (933)
..........||+.|+|||.+.+..++.++||||||+++|||++ |+.||......... ....... . ...
T Consensus 157 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~------~~~~~~~-~---~~~ 226 (268)
T 3sxs_A 157 DQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVV------LKVSQGH-R---LYR 226 (268)
T ss_dssp TCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHH------HHHHTTC-C---CCC
T ss_pred hhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHH------HHHHcCC-C---CCC
Confidence 55444455567888999999988889999999999999999999 99999765432211 1111111 0 011
Q ss_pred CCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhh
Q 002346 819 PNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVE 864 (933)
Q Consensus 819 ~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~ 864 (933)
+.. ....+.+++.+|++.+|++||++.++++.|+.+.+
T Consensus 227 ~~~--------~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (268)
T 3sxs_A 227 PHL--------ASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLRE 264 (268)
T ss_dssp CTT--------SCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC
T ss_pred CCc--------ChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhh
Confidence 111 01357799999999999999999999999988754
No 37
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=9.7e-41 Score=356.66 Aligned_cols=257 Identities=27% Similarity=0.463 Sum_probs=213.2
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEe
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 659 (933)
.++|++.+.||+|+||.||+|...+++.||+|++..... ..+++.+|++++++++||||+++++++.++...++|||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 85 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM---SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFE 85 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB---CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred hhhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc---CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEE
Confidence 367899999999999999999888899999999986532 24679999999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCC
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPD 739 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~ 739 (933)
|+++++|.+++... ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||+++....
T Consensus 86 ~~~~~~L~~~l~~~----~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 158 (269)
T 4hcu_A 86 FMEHGCLSDYLRTQ----RGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLD 158 (269)
T ss_dssp CCTTCBHHHHHHTT----TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCC
T ss_pred eCCCCcHHHHHHhc----CcccCHHHHHHHHHHHHHHHHHHHh---CCeecCCcchheEEEcCCCCEEeccccccccccc
Confidence 99999999999652 2468999999999999999999999 8999999999999999999999999999986655
Q ss_pred CCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccC
Q 002346 740 GKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENIPKAID 818 (933)
Q Consensus 740 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 818 (933)
..........|++.|+|||++.+..++.++||||+|+++|||++ |+.||........ . ...... ......
T Consensus 159 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~---~---~~~~~~---~~~~~~ 229 (269)
T 4hcu_A 159 DQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEV---V---EDISTG---FRLYKP 229 (269)
T ss_dssp HHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHH---H---HHHHTT---CCCCCC
T ss_pred cccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHH---H---HHHhcC---ccCCCC
Confidence 43333344567889999999998899999999999999999999 9999976533221 1 111111 111111
Q ss_pred CCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhh
Q 002346 819 PNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVE 864 (933)
Q Consensus 819 ~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~ 864 (933)
... ...+.+++.+|++.+|++||++.++++.|+++.+
T Consensus 230 ~~~---------~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~ 266 (269)
T 4hcu_A 230 RLA---------STHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 266 (269)
T ss_dssp TTS---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CcC---------CHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHH
Confidence 111 1357799999999999999999999999988764
No 38
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=2.9e-40 Score=366.59 Aligned_cols=259 Identities=22% Similarity=0.355 Sum_probs=211.3
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCc----hhHHHHHHHHHHHHhcCCCcceeEEeEeeeCce
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGN----KGLSEFQAEIAVLTKVRHRHLVALLGYCINGSE 653 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 653 (933)
+.++|++.+.||+|+||.||+|.. .+|+.||+|++....... ...+.+.+|+.++++++||||+++++++.++..
T Consensus 10 ~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~ 89 (361)
T 2yab_A 10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTD 89 (361)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred hhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCE
Confidence 457899999999999999999965 469999999998754322 235789999999999999999999999999999
Q ss_pred eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCC----cEEEe
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDM----RAKVA 729 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~----~~kl~ 729 (933)
.++||||+++|+|.+++.. ...+++.++..++.||+.||+|||+ ++|+||||||+||+++.++ .+||+
T Consensus 90 ~~lv~e~~~gg~L~~~l~~-----~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~~~vkl~ 161 (361)
T 2yab_A 90 VVLILELVSGGELFDFLAQ-----KESLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLI 161 (361)
T ss_dssp EEEEEECCCSCBHHHHHTT-----CSCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSCCEEEC
T ss_pred EEEEEEcCCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEeCCCCCccCEEEE
Confidence 9999999999999999954 2569999999999999999999999 8999999999999998877 79999
Q ss_pred cccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhc
Q 002346 730 DFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLIS 809 (933)
Q Consensus 730 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~ 809 (933)
|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+ .+..+...
T Consensus 162 DFG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~------~~~~i~~~ 233 (361)
T 2yab_A 162 DFGLAHEIEDGV--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE------TLANITAV 233 (361)
T ss_dssp CCSSCEECCTTC--CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH------HHHHHHTT
T ss_pred ecCCceEcCCCC--ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHHhc
Confidence 999998765532 2234579999999999998899999999999999999999999997653221 11222221
Q ss_pred cCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 810 KENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 810 ~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
....+....+ .....+.+++.+||+.||++||++.|+++ ++|..
T Consensus 234 ~~~~~~~~~~---------~~s~~~~~li~~~L~~dP~~R~t~~e~l~------hp~~~ 277 (361)
T 2yab_A 234 SYDFDEEFFS---------QTSELAKDFIRKLLVKETRKRLTIQEALR------HPWIT 277 (361)
T ss_dssp CCCCCHHHHT---------TSCHHHHHHHHHHSCSSTTTSCCHHHHHT------STTTS
T ss_pred CCCCCchhcc---------CCCHHHHHHHHHHCCCChhHCcCHHHHhc------CcCcC
Confidence 1111111111 11245779999999999999999999986 56654
No 39
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=3.2e-40 Score=375.95 Aligned_cols=256 Identities=20% Similarity=0.336 Sum_probs=210.1
Q ss_pred HHhcCCccCCccccCCCeEEEEEE-eCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEE
Q 002346 578 QVTDNFSEANILGRGGFGVVYGGE-LPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLL 656 (933)
Q Consensus 578 ~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 656 (933)
.+.++|++.+.||+|+||.||+|. ..+|+.||+|++..........+.+.+|+.+++.++|||||++++++.+++..++
T Consensus 8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~l 87 (444)
T 3soa_A 8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYL 87 (444)
T ss_dssp HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEE
T ss_pred cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEE
Confidence 456789999999999999999995 4679999999998776555667789999999999999999999999999999999
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEec---CCCcEEEecccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIG---DDMRAKVADFGL 733 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~---~~~~~kl~DfGl 733 (933)
||||+++|+|.+++.. ...+++.++..++.|+++||+|||+ ++|+||||||+|||++ .++.+||+|||+
T Consensus 88 v~E~~~gg~L~~~i~~-----~~~~~e~~~~~i~~qil~aL~~lH~---~givHrDlKp~NIll~~~~~~~~vkL~DFG~ 159 (444)
T 3soa_A 88 IFDLVTGGELFEDIVA-----REYYSEADASHCIQQILEAVLHCHQ---MGVVHRNLKPENLLLASKLKGAAVKLADFGL 159 (444)
T ss_dssp EECCCBCCBHHHHHHH-----CSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSSTTEEESBSSTTCCEEECCCSS
T ss_pred EEEeCCCCCHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEeccCCCCcEEEccCce
Confidence 9999999999999966 2568999999999999999999999 8999999999999998 467899999999
Q ss_pred cccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCC
Q 002346 734 VKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENI 813 (933)
Q Consensus 734 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (933)
++....... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||...... .. ...........
T Consensus 160 a~~~~~~~~-~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~---~~---~~~i~~~~~~~ 232 (444)
T 3soa_A 160 AIEVEGEQQ-AWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQH---RL---YQQIKAGAYDF 232 (444)
T ss_dssp CBCCCTTCC-BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHH---HH---HHHHHHTCCCC
T ss_pred eEEecCCCc-eeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHH---HH---HHHHHhCCCCC
Confidence 986654332 224468999999999999889999999999999999999999999764322 11 12222222222
Q ss_pred CcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 814 PKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 814 ~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
+....+.+ ...+.+++.+||+.||++||++.|+++
T Consensus 233 ~~~~~~~~---------s~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 233 PSPEWDTV---------TPEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp CTTTTTTS---------CHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CccccccC---------CHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 11111111 235779999999999999999999987
No 40
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.3e-40 Score=363.51 Aligned_cols=260 Identities=26% Similarity=0.412 Sum_probs=210.0
Q ss_pred hcCCccCCccccCCCeEEEEEEeC----CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP----DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERL 655 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 655 (933)
.++|++.+.||+|+||.||+|... .+..||||++.... .....++|.+|+.++++++||||+++++++.++...+
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 126 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY-TERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAM 126 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCC-CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccE
Confidence 468999999999999999999763 35569999997653 4455678999999999999999999999999999999
Q ss_pred EEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 656 LVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 656 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
+||||+++|+|.+++... ...+++.+++.++.|+++||+|||+ .+|+||||||+||+++.++.+||+|||+++
T Consensus 127 lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 199 (325)
T 3kul_A 127 IVTEYMENGSLDTFLRTH----DGQFTIMQLVGMLRGVGAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFGLSR 199 (325)
T ss_dssp EEEECCTTCBHHHHHHTT----TTCSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCSSCE
T ss_pred EEeeCCCCCcHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEECCCCCEEECCCCccc
Confidence 999999999999999642 2469999999999999999999999 899999999999999999999999999998
Q ss_pred cCCCCCce--eecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCC
Q 002346 736 NAPDGKYS--VETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKEN 812 (933)
Q Consensus 736 ~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (933)
........ ......+|+.|+|||++.+..++.++||||||+++|||++ |+.||......+. .. .... ...
T Consensus 200 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~---~~---~~~~-~~~ 272 (325)
T 3kul_A 200 VLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDV---IS---SVEE-GYR 272 (325)
T ss_dssp ECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHH---HH---HHHT-TCC
T ss_pred ccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHH---HH---HHHc-CCC
Confidence 76543221 2233456788999999998899999999999999999999 9999976543221 11 1111 111
Q ss_pred CCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 813 IPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 813 ~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
.+ ..... ...+.+++.+||+.||++||++.++++.|+.+...
T Consensus 273 ~~--~~~~~---------~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~ 314 (325)
T 3kul_A 273 LP--APMGC---------PHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRS 314 (325)
T ss_dssp CC--CCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred CC--CCCCc---------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhC
Confidence 11 11111 24577999999999999999999999999988654
No 41
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=2.6e-40 Score=362.48 Aligned_cols=260 Identities=22% Similarity=0.368 Sum_probs=212.6
Q ss_pred eecHHHHHHHhcC----------CccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCC
Q 002346 570 AISIEVLRQVTDN----------FSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRH 638 (933)
Q Consensus 570 ~~~~~~l~~~~~~----------~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h 638 (933)
.++.++++.+++. |...+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+.++++++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h 101 (321)
T 2c30_A 24 VVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRK--QQRRELLFNEVVIMRDYQH 101 (321)
T ss_dssp -CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT--CCSHHHHHHHHHHHTTCCC
T ss_pred cCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccc--hhHHHHHHHHHHHHHhCCC
Confidence 4667777777664 777889999999999999765 79999999987653 3445789999999999999
Q ss_pred CcceeEEeEeeeCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcE
Q 002346 639 RHLVALLGYCINGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNI 718 (933)
Q Consensus 639 ~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Ni 718 (933)
|||+++++++..++..++||||+++++|.+++.. ..+++.++..++.|+++||+|||+ .+|+||||||+||
T Consensus 102 ~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~------~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NI 172 (321)
T 2c30_A 102 FNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ------VRLNEEQIATVCEAVLQALAYLHA---QGVIHRDIKSDSI 172 (321)
T ss_dssp TTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTT------CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGE
T ss_pred CCcceEEEEEEECCEEEEEEecCCCCCHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHE
Confidence 9999999999999999999999999999999854 458999999999999999999999 8999999999999
Q ss_pred EecCCCcEEEecccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhH
Q 002346 719 LIGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAH 798 (933)
Q Consensus 719 ll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~ 798 (933)
+++.++.+||+|||++........ ......||+.|+|||++.+..++.++||||||+++|||++|+.||.......
T Consensus 173 ll~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~--- 248 (321)
T 2c30_A 173 LLTLDGRVKLSDFGFCAQISKDVP-KRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQ--- 248 (321)
T ss_dssp EECTTCCEEECCCTTCEECCSSSC-CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH---
T ss_pred EECCCCcEEEeeeeeeeecccCcc-ccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---
Confidence 999999999999999886654322 2344679999999999999999999999999999999999999997653321
Q ss_pred HHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 799 LVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
....+ .... . +.+.. .......+.+++.+||+.||++||++.|+++
T Consensus 249 ~~~~~---~~~~--~-----~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 249 AMKRL---RDSP--P-----PKLKN---SHKVSPVLRDFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp HHHHH---HHSS--C-----CCCTT---GGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHH---hcCC--C-----CCcCc---cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 11111 1111 0 11110 0111235779999999999999999999986
No 42
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=2e-40 Score=364.50 Aligned_cols=249 Identities=26% Similarity=0.392 Sum_probs=206.9
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC-CchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
++|++.+.||+|+||.||+|.. .+|+.||+|++++... .......+.+|+.+++.++||||+++++++...+..++||
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~ 84 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence 6899999999999999999965 4699999999976532 2334678899999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+++|+|.+++.. ...+++.+++.++.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+++...
T Consensus 85 E~~~gg~L~~~l~~-----~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 156 (337)
T 1o6l_A 85 EYANGGELFFHLSR-----ERVFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGI 156 (337)
T ss_dssp ECCTTCBHHHHHHH-----HSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred eCCCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCcCCHHHEEECCCCCEEEeeccchhhcc
Confidence 99999999999965 2468999999999999999999999 899999999999999999999999999998643
Q ss_pred CCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccC
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAID 818 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 818 (933)
.... ......||+.|+|||++.+..++.++|||||||++|||++|+.||....... ....+......++..
T Consensus 157 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~------~~~~i~~~~~~~p~~-- 227 (337)
T 1o6l_A 157 SDGA-TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER------LFELILMEEIRFPRT-- 227 (337)
T ss_dssp CTTC-CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCCCCCCTT--
T ss_pred cCCC-cccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHH------HHHHHHcCCCCCCCC--
Confidence 3221 2344689999999999999999999999999999999999999997643221 122222222222221
Q ss_pred CCCCCChhhHHHHHHHHHHHHHcccCCCCCCC-----CHHHHHH
Q 002346 819 PNLNLDEETIESIYRVAELAGHCTAREPQQRP-----DMGHAVN 857 (933)
Q Consensus 819 ~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RP-----s~~evl~ 857 (933)
+ ..++.+++.+||+.||++|| +++|+++
T Consensus 228 --~---------s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 228 --L---------SPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp --S---------CHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred --C---------CHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 1 13577999999999999999 8888876
No 43
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=4.5e-40 Score=358.15 Aligned_cols=265 Identities=25% Similarity=0.431 Sum_probs=207.9
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEe
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 659 (933)
.++|++.+.||+|+||.||+|... ..+|+|+++.........+.|.+|+.++++++||||+++++++. .+..++|||
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e 111 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEEe
Confidence 368899999999999999999863 46999998876556666788999999999999999999999875 456889999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCC
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPD 739 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~ 739 (933)
|+++++|.+++... ...+++.+++.++.|+++||+|||+ .+|+||||||+||+++.++.+||+|||+++....
T Consensus 112 ~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~ 184 (307)
T 3lb7_A 112 WCEGSSLYKHLHVQ----ETKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSR 184 (307)
T ss_dssp CCSSCBHHHHHHTS----CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCSSSEEECTTSCEEECCCCSSCC---
T ss_pred cCCCCcHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHHh---CCEeeCCCChhhEEEcCCCCEEEccCCCceeccc
Confidence 99999999999642 3569999999999999999999999 8999999999999999999999999999975443
Q ss_pred CC-ceeecccccccCcccccccC---CCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCc
Q 002346 740 GK-YSVETRLAGTFGYLAPEYAA---TGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPK 815 (933)
Q Consensus 740 ~~-~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (933)
.. ........||+.|+|||++. +..++.++||||||+++|||++|+.||......+.. ...... ......+..
T Consensus 185 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~--~~~~~~-~~~~~~~~~ 261 (307)
T 3lb7_A 185 WSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQI--IFMVGR-GYASPDLSK 261 (307)
T ss_dssp ---------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHH--HHHHHH-TCCCCCSTT
T ss_pred ccccccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHH--HHHHhc-CCCCcchhh
Confidence 11 12233457999999999885 567889999999999999999999999865443221 111111 100111111
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcC
Q 002346 816 AIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWK 867 (933)
Q Consensus 816 ~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~ 867 (933)
+... ....+.+++.+|++.+|++||++.|+++.|+.+.+.+.
T Consensus 262 -~~~~---------~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~p 303 (307)
T 3lb7_A 262 -LYKN---------CPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp -SCSS---------SCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred -hhcC---------CcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhcc
Confidence 1111 12467899999999999999999999999998866554
No 44
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=3.8e-40 Score=363.12 Aligned_cols=266 Identities=18% Similarity=0.213 Sum_probs=214.7
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 657 (933)
.++|++.+.||+|+||.||+|.. .+++.||||++..... .+.+.+|+.+++++ +||||+++++++..+...++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv 83 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR----APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMV 83 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS----SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc----hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEE
Confidence 46899999999999999999964 6799999999875432 23688999999999 999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCc-----EEEeccc
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMR-----AKVADFG 732 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~-----~kl~DfG 732 (933)
|||+ +++|.+++... ...+++.+++.++.|+++||+|||+ .+|+||||||+||+++.++. +||+|||
T Consensus 84 ~e~~-~~~L~~~~~~~----~~~~~~~~~~~i~~qi~~~l~~LH~---~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg 155 (330)
T 2izr_A 84 LELL-GPSLEDLFDLC----DRTFSLKTVLMIAIQLISRMEYVHS---KNLIYRDVKPENFLIGRPGNKTQQVIHIIDFA 155 (330)
T ss_dssp EECC-CCBHHHHHHHT----TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTCTTSEEECCCT
T ss_pred EEeC-CCCHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeeeccCCCCCCceEEEEEcc
Confidence 9999 99999999752 2569999999999999999999999 89999999999999999887 9999999
Q ss_pred ccccCCCCCce------eecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHH
Q 002346 733 LVKNAPDGKYS------VETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRV 806 (933)
Q Consensus 733 la~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~ 806 (933)
+++........ ......||+.|+|||++.+..++.++|||||||++|||++|+.||..............+...
T Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~ 235 (330)
T 2izr_A 156 LAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDT 235 (330)
T ss_dssp TCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHH
T ss_pred cceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhh
Confidence 99865443221 124568999999999999999999999999999999999999999876544333322222111
Q ss_pred hhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCCC
Q 002346 807 LISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKPA 869 (933)
Q Consensus 807 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~~ 869 (933)
.... . .+... .... ++.+++..|++.+|.+||+++++++.|+++.+.....
T Consensus 236 ~~~~-~-~~~~~---------~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~~~~ 286 (330)
T 2izr_A 236 KRAT-P-IEVLC---------ENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYM 286 (330)
T ss_dssp HHHS-C-HHHHT---------TTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred hccC-C-HHHHh---------ccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 1100 0 00000 0011 6889999999999999999999999999888766443
No 45
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=3.5e-40 Score=367.12 Aligned_cols=255 Identities=23% Similarity=0.374 Sum_probs=209.9
Q ss_pred HHhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEE
Q 002346 578 QVTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLL 656 (933)
Q Consensus 578 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 656 (933)
.+.++|++.+.||+|+||.||+|.. .+|+.||+|++..........+.+.+|+.++++++||||+++++++.++...++
T Consensus 26 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~l 105 (362)
T 2bdw_A 26 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL 105 (362)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred CcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence 4467899999999999999999955 468999999998776566667889999999999999999999999999999999
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCC---cEEEecccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDM---RAKVADFGL 733 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~---~~kl~DfGl 733 (933)
||||+++|+|.+++.. ...+++.++..++.||++||+|||+ ++|+||||||+||+++.++ .+||+|||+
T Consensus 106 v~e~~~gg~L~~~l~~-----~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~ 177 (362)
T 2bdw_A 106 VFDLVTGGELFEDIVA-----REFYSEADASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGL 177 (362)
T ss_dssp EECCCCSCBHHHHHTT-----CSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEESCSSTTCCEEECCCTT
T ss_pred EEecCCCCCHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEEeecCc
Confidence 9999999999999854 2468999999999999999999999 8999999999999998654 599999999
Q ss_pred cccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCC
Q 002346 734 VKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENI 813 (933)
Q Consensus 734 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (933)
++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...... .+. ..........
T Consensus 178 a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~---~~~---~~i~~~~~~~ 249 (362)
T 2bdw_A 178 AIEVNDSE--AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH---RLY---AQIKAGAYDY 249 (362)
T ss_dssp CBCCTTCC--SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHH---HHHHHTCCCC
T ss_pred ceEecCCc--ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH---HHH---HHHHhCCCCC
Confidence 98665432 223468999999999999889999999999999999999999999764321 111 1222211111
Q ss_pred CcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 814 PKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 814 ~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
+.... ......+.+++.+||+.||++||++.|+++
T Consensus 250 ~~~~~---------~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 284 (362)
T 2bdw_A 250 PSPEW---------DTVTPEAKSLIDSMLTVNPKKRITADQALK 284 (362)
T ss_dssp CTTGG---------GGSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred Ccccc---------cCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 11100 011245779999999999999999999976
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.7e-40 Score=362.14 Aligned_cols=292 Identities=26% Similarity=0.424 Sum_probs=211.9
Q ss_pred CCccchHHHHHHHHHhcCCCC--CCCCCCCCCCCcc--ccceEeCCC---CCEEEEEecCCCCcc--ccCccccCCcccc
Q 002346 23 TSLGDDGSVMLKLAQSLQNLP--SDWSSTSSTGYCE--WTGINCDNS---NRVTTISLAKSGLSG--TLSPEISSLTQLE 93 (933)
Q Consensus 23 ~~~~~d~~~l~~~~~~~~~~~--~~w~~~~~~~~C~--w~gv~c~~~---~~v~~L~l~~~~l~~--~~~~~~~~l~~L~ 93 (933)
.|.++|++||++||+++.+.. .+|.. +.+||. |.||+|+.. ++|+.|+|++++++| .+|..|+.+++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~--~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLP--TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCT--TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCC--CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 477889999999999997532 46753 567888 999999864 799999999999999 8999999999999
Q ss_pred eeeccc-ccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeecc
Q 002346 94 TLSFQM-NNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMD 171 (933)
Q Consensus 94 ~L~l~~-N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~ 171 (933)
+|+|++ |.+.+.+| .|.++++|++|+|++|++++..+..|.++++|++|+|++|.+
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l---------------------- 137 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL---------------------- 137 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE----------------------
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc----------------------
Confidence 999994 89988777 677788888888888777754444455555555555555554
Q ss_pred CcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCc-cCcEEEecCCccCCC
Q 002346 172 NANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMT-QLRQVWLHKNQFTGP 250 (933)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~-~L~~L~L~~N~l~~~ 250 (933)
.+.+|..|..+++|++|+|++|++++.+|..+.. ++ +|+.|+|++|++++.
T Consensus 138 ----~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~------------------------l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 138 ----SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS------------------------FSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp ----ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC------------------------CCTTCCEEECCSSEEEEE
T ss_pred ----CCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh------------------------hhhcCcEEECcCCeeecc
Confidence 4444455555555555555555555445544332 33 455555555555544
Q ss_pred CCC-CCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCch
Q 002346 251 IPD-LSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQ 329 (933)
Q Consensus 251 ~~~-~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~ 329 (933)
+|. +..+. |+.|+|++|++++.+|..|..+++|+.|+|++|++++.+|.
T Consensus 190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------------------------- 239 (313)
T 1ogq_A 190 IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK----------------------------- 239 (313)
T ss_dssp CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-----------------------------
T ss_pred CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-----------------------------
Confidence 442 44444 77777777777777788888888888888888887754331
Q ss_pred hhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCc
Q 002346 330 VTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPD 409 (933)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~ 409 (933)
+..+++|+.|+|++|++++.+|..|..+++|+.|+|++|+++|.+|.
T Consensus 240 ---------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 240 ---------------------------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp ---------------------------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ---------------------------------ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 22346777888888888888888888889999999999999988887
Q ss_pred ccCCCCCcCEEeccCCc-Cccc
Q 002346 410 GLTKLASLQNLDVSNNN-LSGK 430 (933)
Q Consensus 410 ~~~~l~~L~~l~ls~N~-l~g~ 430 (933)
. ..+++|+.+++++|+ ++|.
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEEST
T ss_pred C-ccccccChHHhcCCCCccCC
Confidence 6 788888888888887 6664
No 47
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=3.6e-40 Score=358.55 Aligned_cols=262 Identities=25% Similarity=0.409 Sum_probs=205.7
Q ss_pred HhcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHh--cCCCcceeEEeEeee----Cc
Q 002346 579 VTDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTK--VRHRHLVALLGYCIN----GS 652 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~----~~ 652 (933)
+.++|++.+.||+|+||.||+|.. +++.||||++... ....+.+|.+++.. ++||||+++++++.. ..
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~-----~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~ 79 (301)
T 3q4u_A 6 VARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR-----DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSST 79 (301)
T ss_dssp CGGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG-----GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEE
T ss_pred ccCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc-----cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCc
Confidence 457899999999999999999987 7999999998653 23566677777766 799999999998754 34
Q ss_pred eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhh--------hccCCCeEecCCCCCcEEecCCC
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLH--------SLAQQSFIHRDLKPSNILIGDDM 724 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~Dik~~Nill~~~~ 724 (933)
..++||||+++|+|.++++. ..+++..++.++.|+++||+||| + ++|+||||||+|||++.++
T Consensus 80 ~~~lv~e~~~~g~L~~~l~~------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~---~~ivH~Dlkp~Nill~~~~ 150 (301)
T 3q4u_A 80 QLWLITHYHEMGSLYDYLQL------TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGK---PAIAHRDLKSKNILVKKNG 150 (301)
T ss_dssp EEEEEECCCTTCBHHHHHTT------CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCB---CEEECSCCCGGGEEECTTS
T ss_pred eeEEehhhccCCCHHHHHhh------cccCHHHHHHHHHHHHHHHHHHHHhhhhccCC---CCeecCCCChHhEEEcCCC
Confidence 57899999999999999954 46899999999999999999999 6 8999999999999999999
Q ss_pred cEEEecccccccCCCCCcee---ecccccccCcccccccCCC------CCCCccchHhHHHHHHHHHcC----------C
Q 002346 725 RAKVADFGLVKNAPDGKYSV---ETRLAGTFGYLAPEYAATG------RVTTKIDVYAFGVVLMETITG----------R 785 (933)
Q Consensus 725 ~~kl~DfGla~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~SlG~~l~elltG----------~ 785 (933)
.+||+|||+++......... .....||+.|+|||++.+. .++.++|||||||++|||++| +
T Consensus 151 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~ 230 (301)
T 3q4u_A 151 QCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYK 230 (301)
T ss_dssp CEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCC
T ss_pred CEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCcccccccc
Confidence 99999999997554433222 2334799999999999876 456799999999999999999 8
Q ss_pred CCCCCCCCchhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhh
Q 002346 786 KALDDTMPDDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPL 862 (933)
Q Consensus 786 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~ 862 (933)
.||....+..... .. ......... ..+.+............+.+++.+||+.||++||++.++++.|+++
T Consensus 231 ~pf~~~~~~~~~~-~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 231 PPFYDVVPNDPSF-ED-MRKVVCVDQ-----QRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp CTTTTTSCSSCCH-HH-HHHHHTTSC-----CCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred ccccccCCCCcch-hh-hhHHHhccC-----CCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 8887654332211 11 111111111 1112221222334566788999999999999999999999999864
No 48
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=3.2e-40 Score=355.50 Aligned_cols=258 Identities=26% Similarity=0.415 Sum_probs=210.7
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEe
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 659 (933)
.++|++.+.||+|+||.||+|+..++..||+|++..... ..+++.+|++++.+++||||+++++++.++...++|||
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 99 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM---SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITE 99 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB---CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEC
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC---CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEe
Confidence 468999999999999999999988888999999986532 24679999999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCC
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPD 739 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~ 739 (933)
|+++++|.+++... ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||+++....
T Consensus 100 ~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~ 172 (283)
T 3gen_A 100 YMANGCLLNYLREM----RHRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD 172 (283)
T ss_dssp CCTTCBHHHHHHCG----GGCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCC
T ss_pred ccCCCcHHHHHHHh----ccCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCccceEEEcCCCCEEEccccccccccc
Confidence 99999999999652 2458999999999999999999999 8999999999999999999999999999986655
Q ss_pred CCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccC
Q 002346 740 GKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENIPKAID 818 (933)
Q Consensus 740 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 818 (933)
..........||+.|+|||++.+..++.++||||||+++|||++ |+.||......... ...... ......
T Consensus 173 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~------~~~~~~---~~~~~~ 243 (283)
T 3gen_A 173 DEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETA------EHIAQG---LRLYRP 243 (283)
T ss_dssp HHHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHH------HHHHTT---CCCCCC
T ss_pred cccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHH------HHHhcc---cCCCCC
Confidence 43333334567888999999998899999999999999999998 99999765432211 111111 111111
Q ss_pred CCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 819 PNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 819 ~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
... ...+.+++.+||+.+|++||++.++++.|++++++
T Consensus 244 ~~~---------~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~ 281 (283)
T 3gen_A 244 HLA---------SEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 281 (283)
T ss_dssp TTC---------CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CcC---------CHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence 111 13577999999999999999999999999887643
No 49
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=5.4e-40 Score=358.38 Aligned_cols=273 Identities=25% Similarity=0.355 Sum_probs=208.0
Q ss_pred HhcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
+.++|++.+.||+|+||.||+|...+|+.||+|++..........+.+.+|++++++++||||+++++++.++...++||
T Consensus 19 l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 98 (311)
T 3niz_A 19 LMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF 98 (311)
T ss_dssp SSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEE
T ss_pred hHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEE
Confidence 35789999999999999999998888999999999876544555678999999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||++ ++|.+++... ...+++.+++.++.|+++||+|||+ .+|+||||||+||+++.++.+||+|||+++...
T Consensus 99 e~~~-~~l~~~~~~~----~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~ 170 (311)
T 3niz_A 99 EFME-KDLKKVLDEN----KTGLQDSQIKIYLYQLLRGVAHCHQ---HRILHRDLKPQNLLINSDGALKLADFGLARAFG 170 (311)
T ss_dssp ECCS-EEHHHHHHTC----TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEETT
T ss_pred cCCC-CCHHHHHHhc----cCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCchHhEEECCCCCEEEccCcCceecC
Confidence 9997 5888888542 2458999999999999999999999 899999999999999999999999999998665
Q ss_pred CCCceeecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhcc--CCCCc
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISK--ENIPK 815 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 815 (933)
.... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+.... +....... ..++.
T Consensus 171 ~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~---i~~~~~~~~~~~~~~ 246 (311)
T 3niz_A 171 IPVR-SYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPK---IFSILGTPNPREWPQ 246 (311)
T ss_dssp SCCC----CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHH---HHHHHCCCCTTTSGG
T ss_pred CCcc-cccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHH---HHHHHCCCChHHhhh
Confidence 3322 2234578999999999876 5689999999999999999999999987554332211 11111100 00000
Q ss_pred cc------CCCCC-CChhhH-----HHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCCC
Q 002346 816 AI------DPNLN-LDEETI-----ESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKPA 869 (933)
Q Consensus 816 ~~------d~~l~-~~~~~~-----~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~~ 869 (933)
.- ..... ...... ....++.+++.+||+.||++|||++|+++ ++|...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~------hp~f~~ 306 (311)
T 3niz_A 247 VQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN------HPYFKD 306 (311)
T ss_dssp GTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT------SGGGTT
T ss_pred hhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc------Cccccc
Confidence 00 00000 000000 11245779999999999999999999986 666653
No 50
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=2.1e-40 Score=363.32 Aligned_cols=258 Identities=22% Similarity=0.350 Sum_probs=205.3
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
.++|++.+.||+|+||.||+|.. .+++.||||++..... ....+.+.+|+.+++.++||||+++++++.++...++||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~ 84 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA-VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL 84 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccc-cchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEE
Confidence 46899999999999999999965 4799999999875532 233467899999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+++|+|.+++.. ...+++.+++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||+++...
T Consensus 85 e~~~~~~L~~~l~~-----~~~~~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 156 (323)
T 3tki_A 85 EYCSGGELFDRIEP-----DIGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFR 156 (323)
T ss_dssp ECCTTEEGGGGSBT-----TTBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEECE
T ss_pred EcCCCCcHHHHHhh-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCccccccchHHEEEeCCCCEEEEEeeccceec
Confidence 99999999999854 2469999999999999999999999 899999999999999999999999999998654
Q ss_pred CCCc-eeecccccccCcccccccCCCCC-CCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcc
Q 002346 739 DGKY-SVETRLAGTFGYLAPEYAATGRV-TTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKA 816 (933)
Q Consensus 739 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (933)
.... .......||+.|+|||++.+..+ +.++|||||||++|||++|+.||........ ....+. .......
T Consensus 157 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~~~~----~~~~~~~-- 229 (323)
T 3tki_A 157 YNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQ-EYSDWK----EKKTYLN-- 229 (323)
T ss_dssp ETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSH-HHHHHH----TTCTTST--
T ss_pred cCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHH-HHHHHh----cccccCC--
Confidence 3221 22345689999999999987765 7899999999999999999999986543222 111111 1111100
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 817 IDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 817 ~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
+ .......+.+++.+||+.||++||++.|+++ ++|..
T Consensus 230 --~-------~~~~~~~~~~li~~~L~~dP~~R~t~~eil~------h~~~~ 266 (323)
T 3tki_A 230 --P-------WKKIDSAPLALLHKILVENPSARITIPDIKK------DRWYN 266 (323)
T ss_dssp --T-------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT------CTTTT
T ss_pred --c-------cccCCHHHHHHHHHHccCChhhCcCHHHHhh------Chhhc
Confidence 0 0011235678999999999999999999976 66654
No 51
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6.4e-40 Score=359.04 Aligned_cols=252 Identities=19% Similarity=0.293 Sum_probs=207.5
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
+.++|++.+.||+|+||.||+|.. .+++.||+|.+... ......+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 3 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv 79 (321)
T 1tki_A 3 LYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK---GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMI 79 (321)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC---THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred hhhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC---cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEE
Confidence 357899999999999999999965 46889999998754 33456789999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecC--CCcEEEecccccc
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGD--DMRAKVADFGLVK 735 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~--~~~~kl~DfGla~ 735 (933)
|||+++|+|.+++.. ....+++.+++.++.|+++||+|||+ ++|+||||||+||+++. ++.+||+|||+++
T Consensus 80 ~e~~~g~~L~~~l~~----~~~~~~~~~~~~i~~qi~~al~~lH~---~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~ 152 (321)
T 1tki_A 80 FEFISGLDIFERINT----SAFELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQAR 152 (321)
T ss_dssp ECCCCCCBHHHHHTS----SSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCTTCE
T ss_pred EEeCCCCCHHHHHHh----cCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCHHHEEEccCCCCCEEEEECCCCe
Confidence 999999999999954 12468999999999999999999999 89999999999999987 7899999999998
Q ss_pred cCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCc
Q 002346 736 NAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPK 815 (933)
Q Consensus 736 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (933)
....... .....||+.|+|||++.+..++.++|||||||++|||++|+.||....... ............+.
T Consensus 153 ~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~------~~~~i~~~~~~~~~ 224 (321)
T 1tki_A 153 QLKPGDN--FRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ------IIENIMNAEYTFDE 224 (321)
T ss_dssp ECCTTCE--EEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH------HHHHHHHTCCCCCH
T ss_pred ECCCCCc--cccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHH------HHHHHHcCCCCCCh
Confidence 7765432 234579999999999998889999999999999999999999997653321 11222221211111
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 816 AIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 816 ~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
...+ ....++.+++.+|++.||++||++.|+++
T Consensus 225 ~~~~---------~~s~~~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 225 EAFK---------EISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp HHHT---------TSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred hhhc---------cCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1001 11246789999999999999999999987
No 52
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=1.8e-40 Score=372.23 Aligned_cols=260 Identities=28% Similarity=0.438 Sum_probs=211.8
Q ss_pred hcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
.++|.+.+.||+|+||.||+|... +++.||||+++... .....++|.+|++++++++||||+++++++..++..++||
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 191 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETL-PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVM 191 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTS-CHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccC-CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEE
Confidence 467889999999999999999775 78999999987542 3444567899999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+++|+|.+++... ...+++.+++.++.|+++||+|||+ ++|+||||||+|||++.++.+||+|||+++...
T Consensus 192 e~~~~g~L~~~l~~~----~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~ 264 (377)
T 3cbl_A 192 ELVQGGDFLTFLRTE----GARLRVKTLLQMVGDAAAGMEYLES---KCCIHRDLAARNCLVTEKNVLKISDFGMSREEA 264 (377)
T ss_dssp ECCTTCBHHHHHHHH----GGGCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCGGGCEECT
T ss_pred EcCCCCCHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHH---CCcCCcccCHHHEEEcCCCcEEECcCCCceecC
Confidence 999999999999652 2458999999999999999999999 899999999999999999999999999998655
Q ss_pred CCCceee-cccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCCCcc
Q 002346 739 DGKYSVE-TRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENIPKA 816 (933)
Q Consensus 739 ~~~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (933)
....... ....+++.|+|||++.++.++.++|||||||++|||++ |+.||........ ... .......+
T Consensus 265 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~---~~~----~~~~~~~~-- 335 (377)
T 3cbl_A 265 DGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQT---REF----VEKGGRLP-- 335 (377)
T ss_dssp TSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHH---HHH----HHTTCCCC--
T ss_pred CCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHH---HHH----HHcCCCCC--
Confidence 4332222 12345778999999998899999999999999999998 9999976533221 111 11111111
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 817 IDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 817 ~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
..... ...+.+++.+||+.||++||+++++++.|+.+.+.
T Consensus 336 ~~~~~---------~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 336 CPELC---------PDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp CCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCCC---------CHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence 11111 13577999999999999999999999999987653
No 53
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=357.87 Aligned_cols=259 Identities=22% Similarity=0.365 Sum_probs=210.6
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCc----hhHHHHHHHHHHHHhcCCCcceeEEeEeeeCce
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGN----KGLSEFQAEIAVLTKVRHRHLVALLGYCINGSE 653 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 653 (933)
+.++|++.+.||+|+||.||+|.. .+|+.||+|++....... ...+.+.+|+.++++++||||+++++++.++..
T Consensus 9 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 88 (326)
T 2y0a_A 9 VDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTD 88 (326)
T ss_dssp HHHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred cccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE
Confidence 346799999999999999999965 468999999987654321 236789999999999999999999999999999
Q ss_pred eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCC----cEEEe
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDM----RAKVA 729 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~----~~kl~ 729 (933)
.++||||+++++|.+++.. ...+++.+++.++.|++.||+|||+ ++|+||||||+||+++.++ .+||+
T Consensus 89 ~~lv~e~~~~~~L~~~l~~-----~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~~kl~ 160 (326)
T 2y0a_A 89 VILILELVAGGELFDFLAE-----KESLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKII 160 (326)
T ss_dssp EEEEEECCCSCBHHHHHTT-----SSCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCSSSSSCCEEEC
T ss_pred EEEEEEcCCCCCHHHHHHh-----cCCcCHHHHHHHHHHHHHHHHHHHH---CCeEcCCCCHHHEEEecCCCCCCCEEEE
Confidence 9999999999999999954 2568999999999999999999999 8999999999999999887 89999
Q ss_pred cccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhc
Q 002346 730 DFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLIS 809 (933)
Q Consensus 730 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~ 809 (933)
|||+++....... .....||+.|+|||++.+..++.++|||||||++|||++|+.||........ . ......
T Consensus 161 Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~---~---~~~~~~ 232 (326)
T 2y0a_A 161 DFGLAHKIDFGNE--FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQET---L---ANVSAV 232 (326)
T ss_dssp CCTTCEECCTTSC--CCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHH---H---HHHHHT
T ss_pred ECCCCeECCCCCc--cccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHH---H---HHHHhc
Confidence 9999987654322 2345799999999999988999999999999999999999999976532211 1 111111
Q ss_pred cCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 810 KENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 810 ~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
....+....+ .....+.+++.+||+.||++||++.|+++ ++|..
T Consensus 233 ~~~~~~~~~~---------~~~~~~~~li~~~L~~dP~~Rpt~~e~l~------hp~~~ 276 (326)
T 2y0a_A 233 NYEFEDEYFS---------NTSALAKDFIRRLLVKDPKKRMTIQDSLQ------HPWIK 276 (326)
T ss_dssp CCCCCHHHHT---------TSCHHHHHHHHHHSCSSGGGSCCHHHHHH------STTTS
T ss_pred CCCcCccccc---------cCCHHHHHHHHHHccCChhhCCCHHHHhc------CCCcc
Confidence 1111111111 11245779999999999999999999987 66654
No 54
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=1.5e-40 Score=371.25 Aligned_cols=274 Identities=25% Similarity=0.386 Sum_probs=217.6
Q ss_pred ecHHHHHHHhcCCccCCccccCCCeEEEEEEe------CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCccee
Q 002346 571 ISIEVLRQVTDNFSEANILGRGGFGVVYGGEL------PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVA 643 (933)
Q Consensus 571 ~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~ 643 (933)
+.....+...++|++.+.||+|+||.||+|.+ .+++.||||++.... .....+.+.+|++++.++ +||||++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~hpniv~ 90 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA-THSEHRALMSELKILIHIGHHLNVVN 90 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcC-CHHHHHHHHHHHHHHHhhcCCcceee
Confidence 34555666788999999999999999999963 356899999997653 344567899999999999 7999999
Q ss_pred EEeEeeeCc-eeEEEEeecCCCChhhHhhhcccCC---------------------------------------------
Q 002346 644 LLGYCINGS-ERLLVYEYMPRGTLAQHLFEWHDHG--------------------------------------------- 677 (933)
Q Consensus 644 l~~~~~~~~-~~~lv~e~~~~gsL~~~l~~~~~~~--------------------------------------------- 677 (933)
+++++.+.+ ..++||||+++|+|.+++.......
T Consensus 91 ~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3vhe_A 91 LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEE 170 (359)
T ss_dssp EEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-----------------------------------------
T ss_pred eeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccc
Confidence 999998755 4899999999999999997643210
Q ss_pred ----------------CCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCCCC
Q 002346 678 ----------------YTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPDGK 741 (933)
Q Consensus 678 ----------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~~~ 741 (933)
...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||+++......
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~ 247 (359)
T 3vhe_A 171 KSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP 247 (359)
T ss_dssp -------------CTTTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCT
T ss_pred cccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEEcCCCcEEEEeccceeeecccc
Confidence 1228999999999999999999999 899999999999999999999999999998654332
Q ss_pred -ceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccCC
Q 002346 742 -YSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENIPKAIDP 819 (933)
Q Consensus 742 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 819 (933)
........||+.|+|||++.+..++.++||||||+++|||++ |+.||......... .. ........ ....
T Consensus 248 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~--~~----~~~~~~~~--~~~~ 319 (359)
T 3vhe_A 248 DYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF--CR----RLKEGTRM--RAPD 319 (359)
T ss_dssp TCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHH--HH----HHHHTCCC--CCCT
T ss_pred cchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHH--HH----HHHcCCCC--CCCC
Confidence 233445678999999999998999999999999999999998 99999765433221 11 11111110 0111
Q ss_pred CCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 820 NLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 820 ~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
.. ...+.+++.+|++.||++||+++|+++.|+.+++.
T Consensus 320 ~~---------~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 356 (359)
T 3vhe_A 320 YT---------TPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 356 (359)
T ss_dssp TC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CC---------CHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHH
Confidence 11 13577999999999999999999999999988754
No 55
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=2.6e-40 Score=375.14 Aligned_cols=263 Identities=19% Similarity=0.308 Sum_probs=211.9
Q ss_pred cHHHHHHHhcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccC-CchhHHHHHHHHHHHHhcCCCcceeEEeEee
Q 002346 572 SIEVLRQVTDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKVRHRHLVALLGYCI 649 (933)
Q Consensus 572 ~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 649 (933)
...+++...++|++.++||+|+||.||+|... +++.||+|++.+... .......+.+|+.++..++||||+++++++.
T Consensus 65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 144 (437)
T 4aw2_A 65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ 144 (437)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence 34455566789999999999999999999764 578999999976321 1122345889999999999999999999999
Q ss_pred eCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEe
Q 002346 650 NGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVA 729 (933)
Q Consensus 650 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~ 729 (933)
+++..++||||+++|+|.+++... ...+++..++.++.|++.||+|||+ .+||||||||+|||++.++.+||+
T Consensus 145 ~~~~~~lV~Ey~~gg~L~~~l~~~----~~~l~e~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILl~~~g~vkL~ 217 (437)
T 4aw2_A 145 DDNNLYLVMDYYVGGDLLTLLSKF----EDRLPEEMARFYLAEMVIAIDSVHQ---LHYVHRDIKPDNILMDMNGHIRLA 217 (437)
T ss_dssp CSSEEEEEECCCTTCBHHHHHHTT----TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEEC
T ss_pred eCCEEEEEEecCCCCcHHHHHHHc----cCCCCHHHHHHHHHHHHHHHHHHHh---CCeEecccCHHHeeEcCCCCEEEc
Confidence 999999999999999999999652 2469999999999999999999999 899999999999999999999999
Q ss_pred cccccccCCCCCceeecccccccCcccccccC-----CCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHH
Q 002346 730 DFGLVKNAPDGKYSVETRLAGTFGYLAPEYAA-----TGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFR 804 (933)
Q Consensus 730 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~ 804 (933)
|||+++.............+||+.|+|||++. .+.++.++|||||||++|||++|+.||......+.. .
T Consensus 218 DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~------~ 291 (437)
T 4aw2_A 218 DFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETY------G 291 (437)
T ss_dssp CCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHH------H
T ss_pred chhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHH------H
Confidence 99999877655544455578999999999986 567899999999999999999999999865432221 1
Q ss_pred HHhhc--cCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCC--CCCHHHHHH
Q 002346 805 RVLIS--KENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQ--RPDMGHAVN 857 (933)
Q Consensus 805 ~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~--RPs~~evl~ 857 (933)
.+... ...++... +.+ ...+.+++.+|+..+|++ ||+++|+++
T Consensus 292 ~i~~~~~~~~~p~~~-~~~---------s~~~~dLi~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 292 KIMNHKERFQFPTQV-TDV---------SENAKDLIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp HHHTHHHHCCCCSSC-CCS---------CHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred hhhhccccccCCccc-ccC---------CHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence 11111 11122111 011 135779999999988888 999999986
No 56
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=6e-40 Score=364.20 Aligned_cols=257 Identities=21% Similarity=0.327 Sum_probs=206.6
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC---CchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM---GNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERL 655 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 655 (933)
.++|++.+.||+|+||.||+|.. .+|+.||||++..... .....+.+.+|+.+++.++||||+++++++.+++..+
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 102 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY 102 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 46899999999999999999954 5799999999865421 1224578999999999999999999999999999999
Q ss_pred EEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCc---EEEeccc
Q 002346 656 LVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMR---AKVADFG 732 (933)
Q Consensus 656 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~---~kl~DfG 732 (933)
+||||+++++|.+++...... ...+++..++.++.|+++||+|||+ ++|+||||||+||+++.++. +||+|||
T Consensus 103 lv~e~~~g~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~al~~lH~---~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg 178 (351)
T 3c0i_A 103 MVFEFMDGADLCFEIVKRADA-GFVYSEAVASHYMRQILEALRYCHD---NNIIHRDVKPHCVLLASKENSAPVKLGGFG 178 (351)
T ss_dssp EEEECCSSCBHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECSSSTTCCEEECCCT
T ss_pred EEEeCCCCCCHHHHHHHhccc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCChHHeEEecCCCCCcEEEecCc
Confidence 999999999999888653222 2468999999999999999999999 89999999999999987654 9999999
Q ss_pred ccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCC
Q 002346 733 LVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKEN 812 (933)
Q Consensus 733 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (933)
+++....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.... . .. ..........
T Consensus 179 ~a~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~---~-~~---~~~i~~~~~~ 250 (351)
T 3c0i_A 179 VAIQLGESGL-VAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK---E-RL---FEGIIKGKYK 250 (351)
T ss_dssp TCEECCTTSC-BCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH---H-HH---HHHHHHTCCC
T ss_pred ceeEecCCCe-eecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH---H-HH---HHHHHcCCCC
Confidence 9987655332 2344579999999999999899999999999999999999999997632 1 11 1122211111
Q ss_pred CCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 813 IPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 813 ~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
......+ .....+.+++.+||+.||++||++.|+++
T Consensus 251 ~~~~~~~---------~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 251 MNPRQWS---------HISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp CCHHHHT---------TSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCccccc---------cCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 1100001 11246789999999999999999999986
No 57
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=3.8e-40 Score=368.45 Aligned_cols=260 Identities=26% Similarity=0.435 Sum_probs=201.0
Q ss_pred hcCCccCCccccCCCeEEEEEEeC----CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP----DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERL 655 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 655 (933)
.++|++.+.||+|+||.||+|... ++..||||+++... .....++|.+|+.++++++||||+++++++.++...+
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 122 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY-TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVM 122 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceE
Confidence 368999999999999999999764 57789999997653 4455678999999999999999999999999999999
Q ss_pred EEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 656 LVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 656 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
+||||+++|+|.+++... ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||+++
T Consensus 123 lv~e~~~~~sL~~~l~~~----~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 195 (373)
T 2qol_A 123 IVTEYMENGSLDSFLRKH----DAQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLGR 195 (373)
T ss_dssp EEEECCTTCBHHHHHHTT----TTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC----
T ss_pred EEEeCCCCCcHHHHHHhC----CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEEcCCCCEEECcCcccc
Confidence 999999999999999652 2468999999999999999999999 899999999999999999999999999998
Q ss_pred cCCCCCcee--ecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCC
Q 002346 736 NAPDGKYSV--ETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKEN 812 (933)
Q Consensus 736 ~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (933)
......... .....+++.|+|||++.+..++.++||||||+++|||++ |+.||......+ ... .... ...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~---~~~---~i~~-~~~ 268 (373)
T 2qol_A 196 VLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQD---VIK---AVDE-GYR 268 (373)
T ss_dssp ------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHH---HHH---HHHT-TEE
T ss_pred ccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH---HHH---HHHc-CCC
Confidence 665432211 122345778999999998999999999999999999998 999997654322 111 1111 111
Q ss_pred CCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 813 IPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 813 ~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
.+. .. .....+.+++.+||+.+|++||++.++++.|+.+...
T Consensus 269 ~~~--~~---------~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~ 310 (373)
T 2qol_A 269 LPP--PM---------DCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN 310 (373)
T ss_dssp CCC--CT---------TCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CCC--Cc---------cccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence 110 00 1124578999999999999999999999999988754
No 58
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=3e-40 Score=379.65 Aligned_cols=259 Identities=26% Similarity=0.454 Sum_probs=212.0
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEe
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 659 (933)
.++|++.+.||+|+||.||+|...++..||||+++... ...++|.+|+.++++++|||||++++++. .+..++|||
T Consensus 187 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e 262 (454)
T 1qcf_A 187 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS---MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITE 262 (454)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS---BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEC
T ss_pred hHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC---ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEe
Confidence 56889999999999999999998888999999998653 34678999999999999999999999986 567899999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCC
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPD 739 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~ 739 (933)
|+++|+|.++++... ...+++.+++.++.||++||+|||+ ++|+||||||+|||++.++.+||+|||+++....
T Consensus 263 ~~~~g~L~~~l~~~~---~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~ 336 (454)
T 1qcf_A 263 FMAKGSLLDFLKSDE---GSKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLARVIED 336 (454)
T ss_dssp CCTTCBHHHHHHSHH---HHTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCC
T ss_pred ecCCCcHHHHHHhcc---CCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCHHHEEECCCCcEEEeeCCCceEcCC
Confidence 999999999996522 1358899999999999999999999 8999999999999999999999999999987654
Q ss_pred CCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccC
Q 002346 740 GKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENIPKAID 818 (933)
Q Consensus 740 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 818 (933)
..........+++.|+|||++..+.++.++|||||||++|||+| |+.||......+ ....+.. ....+. .
T Consensus 337 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~---~~~~i~~----~~~~~~--~ 407 (454)
T 1qcf_A 337 NEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPE---VIRALER----GYRMPR--P 407 (454)
T ss_dssp HHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH---HHHHHHH----TCCCCC--C
T ss_pred CceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHH---HHHHHHc----CCCCCC--C
Confidence 33222333456789999999998899999999999999999999 999997653322 1111111 111110 1
Q ss_pred CCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhc
Q 002346 819 PNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQW 866 (933)
Q Consensus 819 ~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~ 866 (933)
.. ....+.+++.+||+.||++||++.++++.|+.+....
T Consensus 408 ~~---------~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~ 446 (454)
T 1qcf_A 408 EN---------CPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTAT 446 (454)
T ss_dssp TT---------SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSS
T ss_pred CC---------CCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhcc
Confidence 11 1245779999999999999999999999998875443
No 59
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=6.3e-40 Score=366.99 Aligned_cols=251 Identities=23% Similarity=0.387 Sum_probs=201.5
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC-chhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCceeEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG-NKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGSERLL 656 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 656 (933)
.++|++.+.||+|+||.||+|+. .+++.||+|++++.... ....+.+.+|..++.++ +|||||++++++.+++..++
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 36899999999999999999965 46889999999875432 22345688999999887 89999999999999999999
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKN 736 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~ 736 (933)
||||+++|+|.+++... ..+++..++.++.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+++.
T Consensus 131 V~E~~~gg~L~~~l~~~-----~~l~~~~~~~~~~qi~~aL~~LH~---~givHrDLKp~NILl~~~g~ikL~DFGla~~ 202 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQ-----RKLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKE 202 (396)
T ss_dssp EEECCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred EEEcCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCEEeccCCHHHEEECCCCCEEEeecceeee
Confidence 99999999999999762 468999999999999999999999 8999999999999999999999999999985
Q ss_pred CCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchh---hHHHHHHHHHhhccCCC
Q 002346 737 APDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDR---AHLVTWFRRVLISKENI 813 (933)
Q Consensus 737 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~ 813 (933)
..... ......+||+.|+|||++.+..++.++|||||||++|||++|+.||......+. ................+
T Consensus 203 ~~~~~-~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 281 (396)
T 4dc2_A 203 GLRPG-DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRI 281 (396)
T ss_dssp CCCTT-CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCC
T ss_pred cccCC-CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCC
Confidence 33222 223456899999999999999999999999999999999999999975322111 11111222222222222
Q ss_pred CcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCH
Q 002346 814 PKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDM 852 (933)
Q Consensus 814 ~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~ 852 (933)
+..+ . ..+.+++.+||+.||++||++
T Consensus 282 p~~~----s---------~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 282 PRSL----S---------VKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp CTTS----C---------HHHHHHHHHHTCSCTTTSTTC
T ss_pred CCcC----C---------HHHHHHHHHHhcCCHhHcCCC
Confidence 2221 1 357799999999999999996
No 60
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.6e-40 Score=367.71 Aligned_cols=250 Identities=24% Similarity=0.368 Sum_probs=202.2
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC-CchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCceeEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGSERLL 656 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 656 (933)
.++|++.+.||+|+||.||+|.. .+|+.||||++++... .....+.+.+|..+++.+ +||||+++++++.+.+..++
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 101 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF 101 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence 47899999999999999999965 4689999999976532 233456788999999998 79999999999999999999
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKN 736 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~ 736 (933)
||||+++|+|.+++... ..+++.+++.++.|++.||+|||+ ++|+||||||+|||++.++.+||+|||+++.
T Consensus 102 v~E~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NILl~~~g~ikL~DFG~a~~ 173 (353)
T 3txo_A 102 VMEFVNGGDLMFHIQKS-----RRFDEARARFYAAEIISALMFLHD---KGIIYRDLKLDNVLLDHEGHCKLADFGMCKE 173 (353)
T ss_dssp EEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred EEeCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCCcccCCCHHHEEECCCCCEEEccccceee
Confidence 99999999999999662 468999999999999999999999 8999999999999999999999999999985
Q ss_pred CCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcc
Q 002346 737 APDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKA 816 (933)
Q Consensus 737 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (933)
..... ......+||+.|+|||++.+..++.++|||||||++|||++|+.||......+ .+..+.......+..
T Consensus 174 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~------~~~~i~~~~~~~p~~ 246 (353)
T 3txo_A 174 GICNG-VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDD------LFEAILNDEVVYPTW 246 (353)
T ss_dssp SCC----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCCCCCCTT
T ss_pred cccCC-ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHH------HHHHHHcCCCCCCCC
Confidence 43322 22345689999999999998889999999999999999999999997653321 122223222222221
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCH------HHHHH
Q 002346 817 IDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDM------GHAVN 857 (933)
Q Consensus 817 ~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~------~evl~ 857 (933)
+ ...+.+++.+|++.||++||++ .|+++
T Consensus 247 ----~---------~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~ 280 (353)
T 3txo_A 247 ----L---------HEDATGILKSFMTKNPTMRLGSLTQGGEHAILR 280 (353)
T ss_dssp ----S---------CHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred ----C---------CHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence 1 1356799999999999999998 66654
No 61
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=1.6e-39 Score=351.59 Aligned_cols=272 Identities=21% Similarity=0.288 Sum_probs=207.5
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEe
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 659 (933)
++|++.+.||+|+||.||+|.. .+++.||||++..........+.+.+|+.++++++||||+++++++.+++..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 5799999999999999999965 468999999998776555666889999999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCC
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPD 739 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~ 739 (933)
|+++ ++.+++... ...+++.+++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||+++....
T Consensus 82 ~~~~-~l~~~~~~~----~~~l~~~~~~~~~~ql~~~l~~lH~---~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 153 (292)
T 3o0g_A 82 FCDQ-DLKKYFDSC----NGDLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGLARAFGI 153 (292)
T ss_dssp CCSE-EHHHHHHHT----TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECCS
T ss_pred cCCC-CHHHHHHhC----CCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeecccceecCC
Confidence 9975 666666431 2569999999999999999999999 8999999999999999999999999999986643
Q ss_pred CCceeecccccccCcccccccCCCC-CCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhcc-CCCCccc
Q 002346 740 GKYSVETRLAGTFGYLAPEYAATGR-VTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISK-ENIPKAI 817 (933)
Q Consensus 740 ~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 817 (933)
... ......||+.|+|||++.+.. ++.++|||||||++|||++|+.||....... ..+........... ...+...
T Consensus 154 ~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 231 (292)
T 3o0g_A 154 PVR-CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVD-DQLKRIFRLLGTPTEEQWPSMT 231 (292)
T ss_dssp CCS-CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHH-HHHHHHHHHHCCCCTTTCTTGG
T ss_pred ccc-cccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHH-HHHHHHHHHhCCCChhhhhhhc
Confidence 322 223457899999999987765 7999999999999999999998875543221 11111111111000 0000000
Q ss_pred -----------CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 818 -----------DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 818 -----------d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
................+.+++.+|++.||++|||++|+++ ++|..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~------hp~f~ 287 (292)
T 3o0g_A 232 KLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ------HPYFS 287 (292)
T ss_dssp GSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT------SGGGT
T ss_pred ccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc------Ccccc
Confidence 0000000001112345779999999999999999999986 66654
No 62
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=4.6e-40 Score=364.86 Aligned_cols=270 Identities=31% Similarity=0.500 Sum_probs=214.6
Q ss_pred HHHHhcCCccCCccccCCCeEEEEEEeC------CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEee
Q 002346 576 LRQVTDNFSEANILGRGGFGVVYGGELP------DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCI 649 (933)
Q Consensus 576 l~~~~~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 649 (933)
+....++|++.+.||+|+||.||+|... +++.||||+++... .....+.|.+|+.++++++||||+++++++.
T Consensus 42 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~ 120 (343)
T 1luf_A 42 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA-SADMQADFQREAALMAEFDNPNIVKLLGVCA 120 (343)
T ss_dssp TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred eEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc-CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc
Confidence 3445689999999999999999999763 35899999998653 3445678999999999999999999999999
Q ss_pred eCceeEEEEeecCCCChhhHhhhcccC-------------------CCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEe
Q 002346 650 NGSERLLVYEYMPRGTLAQHLFEWHDH-------------------GYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIH 710 (933)
Q Consensus 650 ~~~~~~lv~e~~~~gsL~~~l~~~~~~-------------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH 710 (933)
+++..++||||+++|+|.+++...... ....+++.+++.++.|+++||+|||+ ++|+|
T Consensus 121 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~---~~ivH 197 (343)
T 1luf_A 121 VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---RKFVH 197 (343)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCC
T ss_pred cCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeec
Confidence 999999999999999999999763211 12569999999999999999999999 89999
Q ss_pred cCCCCCcEEecCCCcEEEecccccccCCCCCc-eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCC
Q 002346 711 RDLKPSNILIGDDMRAKVADFGLVKNAPDGKY-SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKAL 788 (933)
Q Consensus 711 ~Dik~~Nill~~~~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~ 788 (933)
|||||+||+++.++.+||+|||+++....... .......||+.|+|||++.+..++.++||||||+++|||++ |+.||
T Consensus 198 ~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~ 277 (343)
T 1luf_A 198 RDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPY 277 (343)
T ss_dssp SCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred CCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcC
Confidence 99999999999999999999999975543221 22234578999999999988899999999999999999999 99999
Q ss_pred CCCCCchhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcC
Q 002346 789 DDTMPDDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWK 867 (933)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~ 867 (933)
......+ .. .... ...... ..... ...+.+++.+||+.||++||++.++++.|+++.+.+.
T Consensus 278 ~~~~~~~---~~---~~~~--~~~~~~-~~~~~---------~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~ 338 (343)
T 1luf_A 278 YGMAHEE---VI---YYVR--DGNILA-CPENC---------PLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAE 338 (343)
T ss_dssp TTSCHHH---HH---HHHH--TTCCCC-CCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC---
T ss_pred CCCChHH---HH---HHHh--CCCcCC-CCCCC---------CHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhh
Confidence 7653221 11 1111 111111 11111 1357799999999999999999999999998876554
No 63
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=8.4e-40 Score=349.74 Aligned_cols=255 Identities=23% Similarity=0.363 Sum_probs=209.0
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeC--ceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCING--SERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~lv 657 (933)
.++|++.+.||+|+||.||+|.. +++.||||++..........++|.+|+.++++++||||+++++++.+. ...++|
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHHhHHHHHhcCCCcceEEEEEE-CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 36799999999999999999988 589999999988766666678899999999999999999999999876 778999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCC--eEecCCCCCcEEecCCCcEEEecccccc
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQS--FIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
|||+++|+|.+++... ....+++.+++.++.|+++||+|||+ ++ |+||||||+||+++.++.++|+|||++.
T Consensus 88 ~e~~~~~~L~~~l~~~---~~~~~~~~~~~~i~~qi~~~l~~lH~---~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~ 161 (271)
T 3kmu_A 88 THWMPYGSLYNVLHEG---TNFVVDQSQAVKFALDMARGMAFLHT---LEPLIPRHALNSRSVMIDEDMTARISMADVKF 161 (271)
T ss_dssp EECCTTCBHHHHHHSC---SSCCCCHHHHHHHHHHHHHHHHHHTT---SSSCCTTCCCSGGGEEECTTSCEEEEGGGSCC
T ss_pred ecccCCCcHHHHHhhc---ccCCCCHHHHHHHHHHHHHHHHHHhc---CCCceecCCCccceEEEcCCcceeEEecccee
Confidence 9999999999999652 22368999999999999999999998 77 9999999999999999999999999876
Q ss_pred cCCCCCceeecccccccCcccccccCCCCCCC---ccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCC
Q 002346 736 NAPDGKYSVETRLAGTFGYLAPEYAATGRVTT---KIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKEN 812 (933)
Q Consensus 736 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (933)
.... ....||+.|+|||.+.+..++. ++||||||+++|||++|+.||........ ...... . .
T Consensus 162 ~~~~------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~------~~~~~~-~-~ 227 (271)
T 3kmu_A 162 SFQS------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEI------GMKVAL-E-G 227 (271)
T ss_dssp TTSC------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHH------HHHHHH-S-C
T ss_pred eecc------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHH------HHHHHh-c-C
Confidence 4332 2347899999999998765544 89999999999999999999976533221 111111 1 1
Q ss_pred CCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhh
Q 002346 813 IPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVE 864 (933)
Q Consensus 813 ~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~ 864 (933)
....+.... ...+.+++.+||+.||++||+++++++.|+.+.+
T Consensus 228 ~~~~~~~~~---------~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 228 LRPTIPPGI---------SPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp CCCCCCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred CCCCCCCCC---------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 111111111 1357799999999999999999999999988753
No 64
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=6.2e-40 Score=376.59 Aligned_cols=262 Identities=30% Similarity=0.484 Sum_probs=207.2
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEe
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 659 (933)
.++|++.+.||+|+||.||+|...++..||||+++.... ..++|.+|++++++++||||+++++++.+ +..++|||
T Consensus 183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e 258 (452)
T 1fmk_A 183 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTE 258 (452)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS---CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEC
T ss_pred hhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC---CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEeh
Confidence 467889999999999999999988888899999986532 34689999999999999999999999876 67899999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCC
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPD 739 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~ 739 (933)
|+++|+|.+++.... ...+++.+++.++.|+++||+|||+ ++|+||||||+|||++.++.+||+|||+++....
T Consensus 259 ~~~~gsL~~~l~~~~---~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~ 332 (452)
T 1fmk_A 259 YMSKGSLLDFLKGET---GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIED 332 (452)
T ss_dssp CCTTCBHHHHHSHHH---HTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCTTC----
T ss_pred hhcCCCHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEECCCCCEEECCCccceecCC
Confidence 999999999996521 2458999999999999999999999 8999999999999999999999999999987655
Q ss_pred CCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccC
Q 002346 740 GKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENIPKAID 818 (933)
Q Consensus 740 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 818 (933)
..........+++.|+|||++..+.++.++||||||+++|||++ |+.||......+. .. .... .... ...
T Consensus 333 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~---~~---~i~~-~~~~--~~~ 403 (452)
T 1fmk_A 333 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV---LD---QVER-GYRM--PCP 403 (452)
T ss_dssp ----------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHH---HH---HHHT-TCCC--CCC
T ss_pred CceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHH---HH---HHHc-CCCC--CCC
Confidence 43333344567889999999998899999999999999999999 9999976533221 11 1111 1111 111
Q ss_pred CCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCCC
Q 002346 819 PNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKPA 869 (933)
Q Consensus 819 ~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~~ 869 (933)
+. ....+.+++.+||+.+|++||+++++++.|+.+.....+.
T Consensus 404 ~~---------~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~~~ 445 (452)
T 1fmk_A 404 PE---------CPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQ 445 (452)
T ss_dssp TT---------SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCCC
T ss_pred CC---------CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCCcc
Confidence 11 1245779999999999999999999999998876554443
No 65
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=365.08 Aligned_cols=266 Identities=30% Similarity=0.432 Sum_probs=215.6
Q ss_pred hcCCccCCccccCCCeEEEEEEe--------CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCcceeEEeEeee
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL--------PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVALLGYCIN 650 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~--------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 650 (933)
.++|.+.+.||+|+||.||+|.. ..+..||||++.... .....+++.+|+++++++ +||||+++++++..
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~ 146 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA-TEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ 146 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc-CHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence 47899999999999999999964 234679999997653 445567899999999999 89999999999999
Q ss_pred CceeEEEEeecCCCChhhHhhhcccC-----------CCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEE
Q 002346 651 GSERLLVYEYMPRGTLAQHLFEWHDH-----------GYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNIL 719 (933)
Q Consensus 651 ~~~~~lv~e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nil 719 (933)
++..++||||+++|+|.+++...... ....+++.+++.++.|+++||+|||+ ++|+||||||+|||
T Consensus 147 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIl 223 (382)
T 3tt0_A 147 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHRDLAARNVL 223 (382)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEE
T ss_pred CCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCcceEE
Confidence 99999999999999999999764321 12459999999999999999999999 89999999999999
Q ss_pred ecCCCcEEEecccccccCCCCCc-eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhh
Q 002346 720 IGDDMRAKVADFGLVKNAPDGKY-SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRA 797 (933)
Q Consensus 720 l~~~~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~ 797 (933)
++.++.+||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||......+
T Consensus 224 l~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~-- 301 (382)
T 3tt0_A 224 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE-- 301 (382)
T ss_dssp ECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH--
T ss_pred EcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH--
Confidence 99999999999999986654322 22334567899999999999999999999999999999999 999997653221
Q ss_pred HHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcC
Q 002346 798 HLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWK 867 (933)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~ 867 (933)
... .... ... ....... ...+.+++.+||+.+|++||++.|+++.|+.+.....
T Consensus 302 -~~~---~~~~-~~~--~~~~~~~---------~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~ 355 (382)
T 3tt0_A 302 -LFK---LLKE-GHR--MDKPSNC---------TNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTS 355 (382)
T ss_dssp -HHH---HHHT-TCC--CCCCSSC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred -HHH---HHHc-CCC--CCCCccC---------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHh
Confidence 111 1111 111 1111111 1357899999999999999999999999999875543
No 66
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=7.4e-40 Score=379.94 Aligned_cols=257 Identities=28% Similarity=0.434 Sum_probs=213.4
Q ss_pred hcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
.++|++.+.||+|+||.||+|... ++..||||+++... ...++|.+|+.++++++|||||+++++|..+...++||
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~ 295 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT---MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT 295 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS---SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc---cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEE
Confidence 467889999999999999999765 48899999997653 24578999999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+++|+|.+++... ....+++..++.++.||++||+|||+ ++|+||||||+|||++.++.+||+|||+++...
T Consensus 296 E~~~~g~L~~~l~~~---~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 369 (495)
T 1opk_A 296 EFMTYGNLLDYLREC---NRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRNLAARNCLVGENHLVKVADFGLSRLMT 369 (495)
T ss_dssp ECCTTCBHHHHHHHS---CTTTSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECGGGCEEECCTTCEECCT
T ss_pred EccCCCCHHHHHHhc---CcCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChhhEEECCCCcEEEeecccceecc
Confidence 999999999999752 23568999999999999999999999 899999999999999999999999999998776
Q ss_pred CCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
...........+++.|+|||++....++.++|||||||++|||++ |+.||........ ...+ ...... ..
T Consensus 370 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~---~~~~----~~~~~~--~~ 440 (495)
T 1opk_A 370 GDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV---YELL----EKDYRM--ER 440 (495)
T ss_dssp TCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH---HHHH----HTTCCC--CC
T ss_pred CCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHH---HHHH----HcCCCC--CC
Confidence 554444445567889999999998899999999999999999999 9999976543322 1111 111111 11
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhh
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLV 863 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~ 863 (933)
.... ...+.+++.+||+.||++||++.++++.|+.+.
T Consensus 441 ~~~~---------~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~ 477 (495)
T 1opk_A 441 PEGC---------PEKVYELMRACWQWNPSDRPSFAEIHQAFETMF 477 (495)
T ss_dssp CTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred CCCC---------CHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence 1111 245779999999999999999999999998764
No 67
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=9.5e-40 Score=356.55 Aligned_cols=246 Identities=27% Similarity=0.418 Sum_probs=206.1
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC-CchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
++|++.+.||+|+||.||+|.. .+|+.||+|++.+... .....+.+.+|+.+++.++||||+++++++.+....++||
T Consensus 6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~ 85 (318)
T 1fot_A 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM 85 (318)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence 6799999999999999999965 4799999999976532 1234577889999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+++|+|.+++.. ...+++..++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||+++...
T Consensus 86 e~~~gg~L~~~l~~-----~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~ 157 (318)
T 1fot_A 86 DYIEGGELFSLLRK-----SQRFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKPENILLDKNGHIKITDFGFAKYVP 157 (318)
T ss_dssp CCCCSCBHHHHHHH-----TSSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTSCEEECCCSSCEECS
T ss_pred eCCCCCCHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChheEEEcCCCCEEEeecCcceecC
Confidence 99999999999965 2468999999999999999999998 899999999999999999999999999998665
Q ss_pred CCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccC
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAID 818 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 818 (933)
.. .....||+.|+|||++.+..++.++|||||||++|||++|+.||....... ....+.......+..
T Consensus 158 ~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~------~~~~i~~~~~~~p~~-- 225 (318)
T 1fot_A 158 DV----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMK------TYEKILNAELRFPPF-- 225 (318)
T ss_dssp SC----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH------HHHHHHHCCCCCCTT--
T ss_pred Cc----cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHH------HHHHHHhCCCCCCCC--
Confidence 42 234589999999999999999999999999999999999999997643221 122223222222221
Q ss_pred CCCCCChhhHHHHHHHHHHHHHcccCCCCCCC-----CHHHHHH
Q 002346 819 PNLNLDEETIESIYRVAELAGHCTAREPQQRP-----DMGHAVN 857 (933)
Q Consensus 819 ~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RP-----s~~evl~ 857 (933)
+. .++.+++.+|++.||++|| +++++++
T Consensus 226 --~~---------~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 226 --FN---------EDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp --SC---------HHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred --CC---------HHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 11 3577999999999999999 7888875
No 68
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=1.1e-39 Score=350.89 Aligned_cols=260 Identities=24% Similarity=0.381 Sum_probs=199.7
Q ss_pred hcCCccCCccccCCCeEEEEEEeC----CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP----DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERL 655 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 655 (933)
.++|++.+.||+|+||.||+|... .+..||+|++.... .....+.+.+|+.++++++||||+++++++. ++..+
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~ 91 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT-SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW 91 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT-SHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCE
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccC-CHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccE
Confidence 468999999999999999999653 24579999987643 3445678999999999999999999999984 56789
Q ss_pred EEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 656 LVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 656 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
+||||+++++|.+++... ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||+++
T Consensus 92 lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~ 164 (281)
T 1mp8_A 92 IIMELCTLGELRSFLQVR----KYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSR 164 (281)
T ss_dssp EEEECCTTEEHHHHHHHT----TTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC-----
T ss_pred EEEecCCCCCHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHh---CCeecccccHHHEEECCCCCEEECcccccc
Confidence 999999999999999652 2468999999999999999999999 899999999999999999999999999998
Q ss_pred cCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCCC
Q 002346 736 NAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENIP 814 (933)
Q Consensus 736 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (933)
..............+++.|+|||++.+..++.++||||||+++|||++ |+.||......+. ...+ .. ...
T Consensus 165 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~---~~~i---~~-~~~-- 235 (281)
T 1mp8_A 165 YMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDV---IGRI---EN-GER-- 235 (281)
T ss_dssp --------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH---HHHH---HT-TCC--
T ss_pred ccCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHH---HHHH---Hc-CCC--
Confidence 765544333344567889999999988899999999999999999997 9999986543322 1111 11 111
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhc
Q 002346 815 KAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQW 866 (933)
Q Consensus 815 ~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~ 866 (933)
..+.+.. ...+.+++.+|++.||++||++.++++.|+.++++.
T Consensus 236 ~~~~~~~---------~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 278 (281)
T 1mp8_A 236 LPMPPNC---------PPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEE 278 (281)
T ss_dssp CCCCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCC---------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence 1111111 245779999999999999999999999999887543
No 69
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=5.5e-40 Score=355.96 Aligned_cols=266 Identities=25% Similarity=0.432 Sum_probs=206.6
Q ss_pred hcCCccCCccccCCCeEEEEEEe-----CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeC--c
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-----PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCING--S 652 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~ 652 (933)
.++|++.+.||+|+||.||+|.+ .+++.||||++... .....+.+.+|+.++++++||||+++++++... .
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 86 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS--TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR 86 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHT
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCC
Confidence 46899999999999999999973 36889999999765 345567899999999999999999999998653 4
Q ss_pred eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccc
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFG 732 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfG 732 (933)
..++||||+++|+|.+++... ...+++.+++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||
T Consensus 87 ~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg 159 (295)
T 3ugc_A 87 NLKLIMEYLPYGSLRDYLQKH----KERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFG 159 (295)
T ss_dssp SCEEEEECCTTCBHHHHHHHC----GGGCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCC
T ss_pred ceEEEEEeCCCCCHHHHHHhc----ccccCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHhhEEEcCCCeEEEccCc
Confidence 589999999999999999762 2358999999999999999999999 899999999999999999999999999
Q ss_pred ccccCCCCCc--eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCc---------hhhHHHH
Q 002346 733 LVKNAPDGKY--SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPD---------DRAHLVT 801 (933)
Q Consensus 733 la~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~---------~~~~~~~ 801 (933)
+++....... .......|++.|+|||.+.+..++.++||||||+++|||+||..|+...... .......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (295)
T 3ugc_A 160 LTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVF 239 (295)
T ss_dssp SCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHH
T ss_pred ccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHH
Confidence 9986654322 1223345778899999999899999999999999999999999998643110 0001111
Q ss_pred HHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 802 WFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 802 ~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
............+ .... ....+.+++.+||+.||++||+++|+++.|+.+.+.
T Consensus 240 ~~~~~~~~~~~~~--~~~~---------~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~ 292 (295)
T 3ugc_A 240 HLIELLKNNGRLP--RPDG---------CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDN 292 (295)
T ss_dssp HHHHHHHTTCCCC--CCTT---------CCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHhccCcCC--CCcC---------cCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHh
Confidence 1111111111111 1111 124678999999999999999999999999988654
No 70
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=1.5e-39 Score=356.00 Aligned_cols=264 Identities=27% Similarity=0.403 Sum_probs=215.0
Q ss_pred hcCCccCCccccCCCeEEEEEEe------CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCce
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL------PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSE 653 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 653 (933)
.++|.+.+.||+|+||.||+|.. .+++.||||++.... .....+++.+|+.++++++||||+++++++.+++.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 100 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA-SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP 100 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC-CHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence 57899999999999999999964 345889999997653 44556789999999999999999999999999999
Q ss_pred eEEEEeecCCCChhhHhhhcccC-------------------CCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCC
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDH-------------------GYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLK 714 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~-------------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik 714 (933)
.++||||+++++|.+++...... ....+++.+++.++.|+++||+|||+ ++|+|||||
T Consensus 101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dik 177 (314)
T 2ivs_A 101 LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAE---MKLVHRDLA 177 (314)
T ss_dssp CEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHH---TTEECCCCS
T ss_pred eEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHH---CCCcccccc
Confidence 99999999999999999763321 12348999999999999999999999 899999999
Q ss_pred CCcEEecCCCcEEEecccccccCCCCCce-eecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCC
Q 002346 715 PSNILIGDDMRAKVADFGLVKNAPDGKYS-VETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTM 792 (933)
Q Consensus 715 ~~Nill~~~~~~kl~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~ 792 (933)
|+||+++.++.+||+|||+++........ ......|++.|+|||.+.+..++.++||||||+++|||++ |+.||....
T Consensus 178 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 257 (314)
T 2ivs_A 178 ARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP 257 (314)
T ss_dssp GGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred hheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99999999999999999999866544322 2234467889999999988889999999999999999999 999998754
Q ss_pred CchhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 793 PDDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
..... ..+ .. . . ........ ...+.+++.+|++.||++||+++++++.|++++..
T Consensus 258 ~~~~~---~~~---~~-~-~-~~~~~~~~---------~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 312 (314)
T 2ivs_A 258 PERLF---NLL---KT-G-H-RMERPDNC---------SEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK 312 (314)
T ss_dssp GGGHH---HHH---HT-T-C-CCCCCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HHHHH---HHh---hc-C-C-cCCCCccC---------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence 43221 111 11 1 1 11111111 24578999999999999999999999999988754
No 71
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=352.52 Aligned_cols=250 Identities=26% Similarity=0.408 Sum_probs=197.1
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCc------------------------hhHHHHHHHHHHHHh
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGN------------------------KGLSEFQAEIAVLTK 635 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~------------------------~~~~~~~~E~~~l~~ 635 (933)
++|++.+.||+|+||.||+|.. .+++.||||++....... ...+++.+|++++++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~ 92 (298)
T 2zv2_A 13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK 92 (298)
T ss_dssp TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHT
T ss_pred cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh
Confidence 6899999999999999999954 578999999987653211 123568999999999
Q ss_pred cCCCcceeEEeEeee--CceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCC
Q 002346 636 VRHRHLVALLGYCIN--GSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDL 713 (933)
Q Consensus 636 l~h~niv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Di 713 (933)
++||||+++++++.+ +...++||||+++++|.+++.. .++++.+++.++.|+++||+|||+ ++|+||||
T Consensus 93 l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dl 163 (298)
T 2zv2_A 93 LDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL------KPLSEDQARFYFQDLIKGIEYLHY---QKIIHRDI 163 (298)
T ss_dssp CCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS------SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCC
T ss_pred CCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCC
Confidence 999999999999986 5688999999999999887532 569999999999999999999999 89999999
Q ss_pred CCCcEEecCCCcEEEecccccccCCCCCceeecccccccCcccccccCCCC---CCCccchHhHHHHHHHHHcCCCCCCC
Q 002346 714 KPSNILIGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGR---VTTKIDVYAFGVVLMETITGRKALDD 790 (933)
Q Consensus 714 k~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~SlG~~l~elltG~~p~~~ 790 (933)
||+||+++.++.+||+|||+++....... ......||+.|+|||++.+.. ++.++|||||||++|||++|+.||..
T Consensus 164 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~ 242 (298)
T 2zv2_A 164 KPSNLLVGEDGHIKIADFGVSNEFKGSDA-LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMD 242 (298)
T ss_dssp CGGGEEECTTSCEEECCCTTCEECSSSSC-EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred CHHHEEECCCCCEEEecCCCccccccccc-cccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCC
Confidence 99999999999999999999987654332 234457999999999997655 47889999999999999999999976
Q ss_pred CCCchhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 791 TMPDDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
.... . ............+. .+.+ ...+.+++.+||+.||++||++.|+++
T Consensus 243 ~~~~---~---~~~~~~~~~~~~~~--~~~~---------~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 243 ERIM---C---LHSKIKSQALEFPD--QPDI---------AEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp SSHH---H---HHHHHHHCCCCCCS--SSCC---------CHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ccHH---H---HHHHHhcccCCCCC--cccc---------CHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 4321 1 11111111111111 1111 135779999999999999999999875
No 72
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=2.8e-39 Score=351.01 Aligned_cols=266 Identities=18% Similarity=0.223 Sum_probs=214.8
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 657 (933)
.++|++.+.||+|+||.||+|.. .+++.||||++..... .+.+.+|+.+++.+ +|+|++++++++..+...++|
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv 84 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD----APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLV 84 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT----SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc----cHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEE
Confidence 46899999999999999999964 6799999999865432 24578899999999 799999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCc-----EEEeccc
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMR-----AKVADFG 732 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~-----~kl~DfG 732 (933)
|||+ +++|.+++... ..++++.+++.++.|+++||+|||+ ++|+||||||+||+++.++. +||+|||
T Consensus 85 ~e~~-~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg 156 (298)
T 1csn_A 85 IDLL-GPSLEDLLDLC----GRKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFG 156 (298)
T ss_dssp EECC-CCBHHHHHHHT----TTCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECCSSSTTTTCEEECCCT
T ss_pred EEec-CCCHHHHHHHh----ccCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEeccCCCCCCCeEEEEECc
Confidence 9999 99999999652 2458999999999999999999998 89999999999999987776 9999999
Q ss_pred ccccCCCCCc------eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHH
Q 002346 733 LVKNAPDGKY------SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRV 806 (933)
Q Consensus 733 la~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~ 806 (933)
+++....... .......||+.|+|||++.+..++.++||||||+++|||++|+.||..............+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~ 236 (298)
T 1csn_A 157 MVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEK 236 (298)
T ss_dssp TCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHH
T ss_pred cccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhh
Confidence 9986654322 1234467999999999999999999999999999999999999999875543332222222211
Q ss_pred hhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 807 LISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 807 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
.. ....+. +.+. ....+.+++.+|++.+|++||+++++++.|+++.+....
T Consensus 237 ~~-~~~~~~-~~~~---------~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~~ 287 (298)
T 1csn_A 237 KQ-STPLRE-LCAG---------FPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNT 287 (298)
T ss_dssp HH-HSCHHH-HTTT---------SCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred cc-CccHHH-HHhh---------CcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCC
Confidence 11 011000 1111 124678999999999999999999999999999876654
No 73
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=1.2e-39 Score=348.73 Aligned_cols=253 Identities=28% Similarity=0.469 Sum_probs=195.3
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCC--chhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMG--NKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
.++|++.+.||+|+||.||+|.. .++.||||++...... ....+.+.+|+++++.++||||+++++++..++..++|
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV 84 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence 36789999999999999999987 5899999998765322 23457899999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCC---eEecCCCCCcEEecC--------CCcE
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQS---FIHRDLKPSNILIGD--------DMRA 726 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~---ivH~Dik~~Nill~~--------~~~~ 726 (933)
|||+++++|.+++.. ..+++..++.++.|+++||+|||+ ++ |+||||||+||+++. ++.+
T Consensus 85 ~e~~~~~~L~~~~~~------~~~~~~~~~~i~~~l~~~l~~lH~---~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~ 155 (271)
T 3dtc_A 85 MEFARGGPLNRVLSG------KRIPPDILVNWAVQIARGMNYLHD---EAIVPIIHRDLKSSNILILQKVENGDLSNKIL 155 (271)
T ss_dssp EECCTTEEHHHHHTS------SCCCHHHHHHHHHHHHHHHHHHHH---SSSSCCCCSCCSGGGEEESSCCSSSCCSSCCE
T ss_pred EEcCCCCCHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHHh---CCCCceeecCCchHHEEEecccccccccCcce
Confidence 999999999999853 468999999999999999999999 66 999999999999986 7789
Q ss_pred EEecccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHH
Q 002346 727 KVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRV 806 (933)
Q Consensus 727 kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~ 806 (933)
||+|||+++...... .....||+.|+|||++.+..++.++||||||+++|||++|+.||......... ...
T Consensus 156 kl~Dfg~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~------~~~ 226 (271)
T 3dtc_A 156 KITDFGLAREWHRTT---KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVA------YGV 226 (271)
T ss_dssp EECCCCC----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHH------HHH
T ss_pred EEccCCccccccccc---ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH------Hhh
Confidence 999999998654432 22457999999999999889999999999999999999999999765322111 111
Q ss_pred hhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhh
Q 002346 807 LISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPL 862 (933)
Q Consensus 807 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~ 862 (933)
.. ........... ...+.+++.+|++.+|++||++.|+++.|+.+
T Consensus 227 ~~--~~~~~~~~~~~---------~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 227 AM--NKLALPIPSTC---------PEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp HT--SCCCCCCCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred hc--CCCCCCCCccc---------CHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 11 11111111111 13578999999999999999999999998753
No 74
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=4.1e-39 Score=355.83 Aligned_cols=250 Identities=24% Similarity=0.389 Sum_probs=202.1
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC-chhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCceeEEE
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG-NKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 657 (933)
++|++.+.||+|+||.||+|.. .+++.||+|++.+.... ....+.+.+|+.++.++ +||||+++++++.+....++|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 5799999999999999999965 46899999999876433 34456788999999988 899999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+++|+|.+++... ..+++..++.++.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+++..
T Consensus 89 ~e~~~gg~L~~~l~~~-----~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~ 160 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQRQ-----RKLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG 160 (345)
T ss_dssp ECCCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCGGGCBCS
T ss_pred EeCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEECCCCCEEEEeccccccc
Confidence 9999999999999652 458999999999999999999999 89999999999999999999999999999864
Q ss_pred CCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchh---hHHHHHHHHHhhccCCCC
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDR---AHLVTWFRRVLISKENIP 814 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 814 (933)
.... .......||+.|+|||++.+..++.++|||||||++|||++|+.||........ ................++
T Consensus 161 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p 239 (345)
T 3a8x_A 161 LRPG-DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIP 239 (345)
T ss_dssp CCTT-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCCC
T ss_pred cCCC-CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCCC
Confidence 3322 123456899999999999999999999999999999999999999975322110 111111222222222222
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCH
Q 002346 815 KAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDM 852 (933)
Q Consensus 815 ~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~ 852 (933)
. .+ ...+.+++.+||+.||++||++
T Consensus 240 ~----~~---------s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 240 R----SL---------SVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp T----TS---------CHHHHHHHHHHTCSSTTTSTTC
T ss_pred C----CC---------CHHHHHHHHHHhcCCHhHCCCC
Confidence 1 11 1357799999999999999996
No 75
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=361.00 Aligned_cols=251 Identities=23% Similarity=0.361 Sum_probs=205.7
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC-CchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
++|++.+.||+|+||.||+|.. .+++.||+|++..... .....+.+.+|+.+++.++|||||++++++.+....++||
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~ 94 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV 94 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 6799999999999999999965 4688999999876432 2344678899999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+.+|+|.+++.. ...+++..++.++.|++.||+|||+ .+|+||||||+|||++.++.+||+|||+++...
T Consensus 95 e~~~gg~L~~~l~~-----~~~l~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 166 (384)
T 4fr4_A 95 DLLLGGDLRYHLQQ-----NVHFKEETVKLFICELVMALDYLQN---QRIIHRDMKPDNILLDEHGHVHITDFNIAAMLP 166 (384)
T ss_dssp CCCTTEEHHHHHHT-----TCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred ecCCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCcHHHeEECCCCCEEEeccceeeecc
Confidence 99999999999965 2569999999999999999999999 899999999999999999999999999998765
Q ss_pred CCCceeecccccccCcccccccCC---CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCc
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAAT---GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPK 815 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (933)
... ......||+.|+|||++.. ..++.++|||||||++|||++|+.||..............+ .......+.
T Consensus 167 ~~~--~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~---~~~~~~~p~ 241 (384)
T 4fr4_A 167 RET--QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTF---ETTVVTYPS 241 (384)
T ss_dssp TTC--CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHH---HHCCCCCCT
T ss_pred CCC--ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHH---hhcccCCCC
Confidence 432 2345689999999999864 45899999999999999999999999865443333322222 111212221
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCC-HHHHHH
Q 002346 816 AIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPD-MGHAVN 857 (933)
Q Consensus 816 ~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs-~~evl~ 857 (933)
. + ...+.+++.+||+.||++||+ ++++.+
T Consensus 242 ~----~---------s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 242 A----W---------SQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp T----S---------CHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred c----C---------CHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 1 1 135779999999999999998 666553
No 76
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=1.2e-39 Score=358.22 Aligned_cols=265 Identities=28% Similarity=0.458 Sum_probs=197.8
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCC----cEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCcee-
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDG----TKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSER- 654 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~----~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 654 (933)
.++|++.+.||+|+||.||+|..... ..||||++..........+++.+|++++++++||||+++++++......
T Consensus 22 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 101 (323)
T 3qup_A 22 EQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKG 101 (323)
T ss_dssp ---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC----
T ss_pred hhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccccc
Confidence 46899999999999999999976433 2799999987655566678999999999999999999999999876655
Q ss_pred -----EEEEeecCCCChhhHhhhcccC-CCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEE
Q 002346 655 -----LLVYEYMPRGTLAQHLFEWHDH-GYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKV 728 (933)
Q Consensus 655 -----~lv~e~~~~gsL~~~l~~~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl 728 (933)
++||||+++|+|.+++...... ....+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||
T Consensus 102 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~---~~ivH~Dikp~NIli~~~~~~kl 178 (323)
T 3qup_A 102 RLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSS---RNFIHRDLAARNCMLAEDMTVCV 178 (323)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEE
T ss_pred CCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHc---CCcccCCCCcceEEEcCCCCEEE
Confidence 8999999999999999763322 12368999999999999999999999 89999999999999999999999
Q ss_pred ecccccccCCCCCc-eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHH
Q 002346 729 ADFGLVKNAPDGKY-SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRV 806 (933)
Q Consensus 729 ~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~ 806 (933)
+|||+++....... .......+++.|+|||.+.+..++.++|||||||++|||++ |+.||......... . ..
T Consensus 179 ~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~---~---~~ 252 (323)
T 3qup_A 179 ADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIY---N---YL 252 (323)
T ss_dssp CCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHH---H---HH
T ss_pred eeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHH---H---HH
Confidence 99999986544332 12233467889999999998899999999999999999999 89999865433221 1 11
Q ss_pred hhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 807 LISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 807 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
.. .... ...+.. ...+.+++.+||+.||++||++.++++.|++++..
T Consensus 253 ~~-~~~~--~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~ 299 (323)
T 3qup_A 253 IG-GNRL--KQPPEC---------MEEVYDLMYQCWSADPKQRPSFTCLRMELENILGH 299 (323)
T ss_dssp HT-TCCC--CCCTTC---------CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred hc-CCCC--CCCCcc---------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 11 1111 111111 13578999999999999999999999999998754
No 77
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=6.1e-40 Score=354.15 Aligned_cols=265 Identities=25% Similarity=0.377 Sum_probs=202.6
Q ss_pred cCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEee
Q 002346 581 DNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYEY 660 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 660 (933)
++|++.+.||+|+||.||+|...+|+.||+|++..........+.+.+|+.++++++||||+++++++..++..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 57999999999999999999888899999999976654444457889999999999999999999999999999999999
Q ss_pred cCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCCC
Q 002346 661 MPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPDG 740 (933)
Q Consensus 661 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~~ 740 (933)
+++ +|.+++... ...+++.++..++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||+++.....
T Consensus 82 ~~~-~l~~~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 153 (288)
T 1ob3_A 82 LDQ-DLKKLLDVC----EGGLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGIP 153 (288)
T ss_dssp CSE-EHHHHHHTS----TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-
T ss_pred cCC-CHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEeECccccccCcc
Confidence 975 999988542 2468999999999999999999999 89999999999999999999999999999865432
Q ss_pred CceeecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhcc--CCCCc--
Q 002346 741 KYSVETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISK--ENIPK-- 815 (933)
Q Consensus 741 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-- 815 (933)
.. ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......+. +.... ...... ...+.
T Consensus 154 ~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~ 229 (288)
T 1ob3_A 154 VR-KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQ--LMRIF-RILGTPNSKNWPNVT 229 (288)
T ss_dssp ---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH--HHHHH-HHHCCCCTTTSTTGG
T ss_pred cc-ccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH--HHHHH-HHHCCCChhhchhhh
Confidence 21 2234578999999999865 4589999999999999999999999976533221 11111 111100 00000
Q ss_pred ---ccCCCCCC------ChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 816 ---AIDPNLNL------DEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 816 ---~~d~~l~~------~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
.+++.+.. ..........+.+++.+||+.||++||+++|+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 230 ELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp GSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred cccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 01111100 0000112245779999999999999999999986
No 78
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=7.2e-40 Score=365.72 Aligned_cols=264 Identities=24% Similarity=0.396 Sum_probs=210.5
Q ss_pred hcCCccCCccccCCCeEEEEEEeC------CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCce
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP------DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSE 653 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 653 (933)
.++|++.+.||+|+||.||+|.+. +++.||||+++... ......++.+|+.++++++|||||++++++..+..
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~ 148 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC-SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP 148 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSC-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccccc-ChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCC
Confidence 468999999999999999999742 46789999997542 34456689999999999999999999999999999
Q ss_pred eEEEEeecCCCChhhHhhhcccC--CCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCC---cEEE
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDH--GYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDM---RAKV 728 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~--~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~---~~kl 728 (933)
.++||||+++|+|.+++...... ....+++.+++.++.|+++||+|||+ ++|+||||||+|||++.++ .+||
T Consensus 149 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~~~~kL 225 (367)
T 3l9p_A 149 RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPGPGRVAKI 225 (367)
T ss_dssp CEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEE
T ss_pred CEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEEecCCCCceEEE
Confidence 99999999999999999764321 12458999999999999999999999 8999999999999999555 5999
Q ss_pred ecccccccCCCCC-ceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHH
Q 002346 729 ADFGLVKNAPDGK-YSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRV 806 (933)
Q Consensus 729 ~DfGla~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~ 806 (933)
+|||+++...... ........||+.|+|||++.+..++.++|||||||++|||++ |+.||....... ... ..
T Consensus 226 ~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~---~~~---~i 299 (367)
T 3l9p_A 226 GDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQE---VLE---FV 299 (367)
T ss_dssp CCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH---HHH---HH
T ss_pred CCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH---HHH---HH
Confidence 9999997432211 112234568999999999988899999999999999999998 999997653322 111 11
Q ss_pred hhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 807 LISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 807 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
.. .... ...... ...+.+++.+||+.+|++||++.++++.|+.+...
T Consensus 300 ~~-~~~~--~~~~~~---------~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~ 346 (367)
T 3l9p_A 300 TS-GGRM--DPPKNC---------PGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 346 (367)
T ss_dssp HT-TCCC--CCCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred Hc-CCCC--CCCccC---------CHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence 11 1110 011111 13577999999999999999999999999887654
No 79
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.1e-39 Score=351.78 Aligned_cols=273 Identities=19% Similarity=0.286 Sum_probs=211.8
Q ss_pred hcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCc--eeEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGS--ERLL 656 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~l 656 (933)
.++|++.+.||+|+||.||+|... +++.||||++..... ....+.+.+|++++++++||||+++++++.... ..++
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 86 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF-LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVL 86 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG-GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccc-cchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEE
Confidence 467999999999999999999654 589999999976532 334678899999999999999999999988655 7799
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEe----cCCCcEEEeccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILI----GDDMRAKVADFG 732 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill----~~~~~~kl~DfG 732 (933)
||||+++++|.+++..... ...+++.+++.++.|+++||+|||+ ++|+||||||+||++ +.++.+||+|||
T Consensus 87 v~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg 161 (319)
T 4euu_A 87 IMEFCPCGSLYTVLEEPSN--AYGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFG 161 (319)
T ss_dssp EEECCTTCBHHHHHHSGGG--TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEECTTSCEEEEECCCT
T ss_pred EEeCCCCCCHHHHHHHhcc--ccCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEEeccCCCCceEEEccCC
Confidence 9999999999999976322 2348999999999999999999999 899999999999999 788889999999
Q ss_pred ccccCCCCCceeecccccccCcccccccC--------CCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHH
Q 002346 733 LVKNAPDGKYSVETRLAGTFGYLAPEYAA--------TGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFR 804 (933)
Q Consensus 733 la~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~ 804 (933)
+++....... .....||+.|+|||++. +..++.++|||||||++|||++|+.||......... ...+.
T Consensus 162 ~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~--~~~~~ 237 (319)
T 4euu_A 162 AARELEDDEQ--FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRN--KEVMY 237 (319)
T ss_dssp TCEECCTTCC--BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGC--HHHHH
T ss_pred CceecCCCCc--eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchh--HHHHH
Confidence 9987655432 23457999999999885 567899999999999999999999999754332211 11122
Q ss_pred HHhhccC-CCCcc----------cCCCCCC-ChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhh
Q 002346 805 RVLISKE-NIPKA----------IDPNLNL-DEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPL 862 (933)
Q Consensus 805 ~~~~~~~-~~~~~----------~d~~l~~-~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~ 862 (933)
....... ..... ....+.. ..........+.+++.+||+.||++||+++|+++...+.
T Consensus 238 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~ 307 (319)
T 4euu_A 238 KIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDI 307 (319)
T ss_dssp HHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred HHhcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence 2221111 00000 0011110 122345556788999999999999999999999877554
No 80
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=6.6e-39 Score=358.92 Aligned_cols=257 Identities=19% Similarity=0.292 Sum_probs=208.5
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
.++|++.+.||+|+||.||+|.. .+|+.||+|++.... ......+.+|+.++++++||||+++++++.++...++||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~ 127 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY--PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLIL 127 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccc--hhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEE
Confidence 47899999999999999999955 478999999987652 334567899999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecC--CCcEEEeccccccc
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGD--DMRAKVADFGLVKN 736 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~--~~~~kl~DfGla~~ 736 (933)
||+++|+|.+++... ...+++.+++.++.|++.||+|||+ ++|+||||||+|||++. ++.+||+|||+++.
T Consensus 128 E~~~gg~L~~~l~~~----~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~ 200 (387)
T 1kob_A 128 EFLSGGELFDRIAAE----DYKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLATK 200 (387)
T ss_dssp ECCCCCBHHHHTTCT----TCCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTCCCEEECCCTTCEE
T ss_pred EcCCCCcHHHHHHhh----cCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccchHHeEEecCCCCceEEEeccccee
Confidence 999999999998541 2468999999999999999999999 89999999999999974 57799999999987
Q ss_pred CCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcc
Q 002346 737 APDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKA 816 (933)
Q Consensus 737 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (933)
...... .....||+.|+|||++.+..++.++|||||||++|||++|+.||....... .. ..........+..
T Consensus 201 ~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~---~~---~~i~~~~~~~~~~ 272 (387)
T 1kob_A 201 LNPDEI--VKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLE---TL---QNVKRCDWEFDED 272 (387)
T ss_dssp CCTTSC--EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH---HH---HHHHHCCCCCCSS
T ss_pred cCCCcc--eeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHH---HH---HHHHhCCCCCCcc
Confidence 655432 233479999999999999999999999999999999999999998643221 11 1111111111111
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 817 IDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 817 ~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
....+ ..++.+++.+||+.||++||++.|+++ ++|..
T Consensus 273 ~~~~~---------s~~~~~li~~~L~~dP~~Rpt~~ell~------hp~~~ 309 (387)
T 1kob_A 273 AFSSV---------SPEAKDFIKNLLQKEPRKRLTVHDALE------HPWLK 309 (387)
T ss_dssp TTTTS---------CHHHHHHHHTTSCSSGGGSCCHHHHHT------STTTS
T ss_pred ccccC---------CHHHHHHHHHHcCCChhHCcCHHHHhh------Ccccc
Confidence 11111 235779999999999999999999986 56654
No 81
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1.5e-39 Score=347.04 Aligned_cols=257 Identities=27% Similarity=0.459 Sum_probs=212.3
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEe
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 659 (933)
.++|++.+.||+|+||.||+|...+++.||+|++..... ..+++.+|++++++++||||+++++++.+++..++|||
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 83 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM---SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTE 83 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB---CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEC
T ss_pred hhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC---CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEe
Confidence 367899999999999999999888889999999986532 24689999999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCC
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPD 739 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~ 739 (933)
|+++++|.+++... ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||++.....
T Consensus 84 ~~~~~~L~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~ 156 (267)
T 3t9t_A 84 FMEHGCLSDYLRTQ----RGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLD 156 (267)
T ss_dssp CCTTCBHHHHHHHT----TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCC
T ss_pred CCCCCcHHHHHhhC----cccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchheEEECCCCCEEEccccccccccc
Confidence 99999999999652 2458999999999999999999999 8999999999999999999999999999986654
Q ss_pred CCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccC
Q 002346 740 GKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENIPKAID 818 (933)
Q Consensus 740 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 818 (933)
..........|++.|+|||++.+..++.++||||||+++|||++ |+.||....... .. ...... ......
T Consensus 157 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~---~~---~~i~~~---~~~~~~ 227 (267)
T 3t9t_A 157 DQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE---VV---EDISTG---FRLYKP 227 (267)
T ss_dssp HHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH---HH---HHHHTT---CCCCCC
T ss_pred ccccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHH---HH---HHHhcC---CcCCCC
Confidence 33222334567889999999988889999999999999999999 899997643221 11 111111 111111
Q ss_pred CCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhh
Q 002346 819 PNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVE 864 (933)
Q Consensus 819 ~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~ 864 (933)
... ...+.+++.+|++.+|++||+++++++.|+++.+
T Consensus 228 ~~~---------~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (267)
T 3t9t_A 228 RLA---------STHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 264 (267)
T ss_dssp TTS---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ccC---------cHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 111 1357799999999999999999999999988764
No 82
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=1.3e-39 Score=360.31 Aligned_cols=246 Identities=26% Similarity=0.355 Sum_probs=206.3
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC-CchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
++|++.+.||+|+||.||+|.. .+|+.||+|++..... .....+.+.+|+.+++.++||||+++++++.+....++||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 6799999999999999999965 4799999999976532 2234678899999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+++|+|.+++... ..+++.+++.++.|++.||+|||+ ++|+||||||+|||++.++.+||+|||+++...
T Consensus 121 e~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~ 192 (350)
T 1rdq_E 121 EYVAGGEMFSHLRRI-----GRFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK 192 (350)
T ss_dssp ECCTTCBHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred cCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCccceEEECCCCCEEEcccccceecc
Confidence 999999999999762 458999999999999999999999 899999999999999999999999999998665
Q ss_pred CCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccC
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAID 818 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 818 (933)
.. .....||+.|+|||++.+..++.++|||||||++|||++|+.||....... ....+......++.
T Consensus 193 ~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~------~~~~i~~~~~~~p~--- 259 (350)
T 1rdq_E 193 GR----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQ------IYEKIVSGKVRFPS--- 259 (350)
T ss_dssp SC----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCCCCCCT---
T ss_pred CC----cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHH------HHHHHHcCCCCCCC---
Confidence 43 234579999999999999999999999999999999999999997653221 12222222222221
Q ss_pred CCCCCChhhHHHHHHHHHHHHHcccCCCCCCCC-----HHHHHH
Q 002346 819 PNLNLDEETIESIYRVAELAGHCTAREPQQRPD-----MGHAVN 857 (933)
Q Consensus 819 ~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs-----~~evl~ 857 (933)
.+ ...+.+++.+||+.||++||+ ++++++
T Consensus 260 -~~---------~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 260 -HF---------SSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp -TC---------CHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred -CC---------CHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 11 135779999999999999998 777765
No 83
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=1.6e-39 Score=351.17 Aligned_cols=262 Identities=28% Similarity=0.503 Sum_probs=199.6
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEe
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 659 (933)
.++|++.+.||+|+||.||+|... ..||||++..........+.|.+|+.++++++||||+++++++ .....++|||
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e 99 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQ 99 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEE
T ss_pred ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEE
Confidence 468999999999999999999863 3699999987766666778899999999999999999999965 4566899999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCC
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPD 739 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~ 739 (933)
|+++++|.+++... ...+++.+++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||+++....
T Consensus 100 ~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~~L~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 172 (289)
T 3og7_A 100 WCEGSSLYHHLHAS----ETKFEMKKLIDIARQTARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSR 172 (289)
T ss_dssp CCCEEEHHHHHTTC-------CCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEEEECCCC-------
T ss_pred ecCCCcHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHHh---CCcccccCccceEEECCCCCEEEccceecccccc
Confidence 99999999999542 2568999999999999999999999 8999999999999999999999999999975543
Q ss_pred CC-ceeecccccccCcccccccC---CCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCc
Q 002346 740 GK-YSVETRLAGTFGYLAPEYAA---TGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPK 815 (933)
Q Consensus 740 ~~-~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (933)
.. ........||+.|+|||++. +..++.++||||||+++|||++|+.||......+. ....... .....
T Consensus 173 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~--~~~~~~~-----~~~~~ 245 (289)
T 3og7_A 173 WSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ--IIEMVGR-----GSLSP 245 (289)
T ss_dssp -----------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHH--HHHHHHH-----TSCCC
T ss_pred ccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHH--HHHHhcc-----cccCc
Confidence 21 12223457999999999986 56788899999999999999999999976543221 1111111 11111
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhh
Q 002346 816 AIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVE 864 (933)
Q Consensus 816 ~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~ 864 (933)
.... + .......+.+++.+|++.+|++||++.++++.|+++.+
T Consensus 246 ~~~~-~-----~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 246 DLSK-V-----RSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp CTTS-S-----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred chhh-c-----cccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence 1110 0 00112467899999999999999999999999988753
No 84
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=5e-40 Score=362.34 Aligned_cols=250 Identities=25% Similarity=0.423 Sum_probs=205.4
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC-CchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCceeE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGSERL 655 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 655 (933)
..++|.+.+.||+|+||.||+|.. .+|+.||+|++++... .....+.+..|..++..+ +||||+++++++.+.+..+
T Consensus 15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~ 94 (345)
T 1xjd_A 15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLF 94 (345)
T ss_dssp -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEE
Confidence 457899999999999999999966 4689999999976532 123456788999999887 8999999999999999999
Q ss_pred EEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 656 LVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 656 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
+||||+++|+|.+++... ..+++.++..++.|++.||+|||+ ++|+||||||+|||++.++.+||+|||+++
T Consensus 95 lv~E~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~vkL~DFG~a~ 166 (345)
T 1xjd_A 95 FVMEYLNGGDLMYHIQSC-----HKFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGMCK 166 (345)
T ss_dssp EEEECCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred EEEeCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCChhhEEECCCCCEEEeEChhhh
Confidence 999999999999999652 458999999999999999999999 899999999999999999999999999998
Q ss_pred cCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCc
Q 002346 736 NAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPK 815 (933)
Q Consensus 736 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (933)
....... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||....... + ...+.......+.
T Consensus 167 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~---~---~~~i~~~~~~~p~ 239 (345)
T 1xjd_A 167 ENMLGDA-KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEE---L---FHSIRMDNPFYPR 239 (345)
T ss_dssp CCCCTTC-CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---H---HHHHHHCCCCCCT
T ss_pred hcccCCC-cccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHH---H---HHHHHhCCCCCCc
Confidence 6443221 2345689999999999999999999999999999999999999997653321 1 2222222222221
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHH-HHH
Q 002346 816 AIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMG-HAV 856 (933)
Q Consensus 816 ~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~-evl 856 (933)
. + ...+.+++.+||+.||++||++. +++
T Consensus 240 ~----~---------s~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 240 W----L---------EKEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp T----S---------CHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred c----c---------CHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 1 1 13577999999999999999997 554
No 85
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-39 Score=358.96 Aligned_cols=252 Identities=22% Similarity=0.328 Sum_probs=200.0
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCC--CcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRH--RHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~lv 657 (933)
.++|++.+.||+|+||.||++...+++.||||++..........+.+.+|+.++.+++| |||+++++++..+...++|
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 87 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 87 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence 46799999999999999999988889999999998766566667889999999999976 9999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
||+ .+++|.+++.. ...+++.++..++.|+++||+|||+ ++|+||||||+|||++ ++.+||+|||+++..
T Consensus 88 ~e~-~~~~L~~~l~~-----~~~~~~~~~~~i~~qi~~al~~lH~---~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~ 157 (343)
T 3dbq_A 88 MEC-GNIDLNSWLKK-----KKSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIV-DGMLKLIDFGIANQM 157 (343)
T ss_dssp ECC-CSEEHHHHHHH-----SCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC
T ss_pred EeC-CCCCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEEE-CCcEEEeeccccccc
Confidence 995 58899999976 2568999999999999999999999 8999999999999997 678999999999866
Q ss_pred CCCCce-eecccccccCcccccccCC-----------CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHH
Q 002346 738 PDGKYS-VETRLAGTFGYLAPEYAAT-----------GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRR 805 (933)
Q Consensus 738 ~~~~~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~ 805 (933)
...... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||........ ....
T Consensus 158 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-----~~~~ 232 (343)
T 3dbq_A 158 QPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQIS-----KLHA 232 (343)
T ss_dssp ------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHH-----HHHH
T ss_pred CcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHH-----HHHH
Confidence 543322 2345679999999999854 6788999999999999999999999976433211 1111
Q ss_pred HhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 806 VLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 806 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
..... ....++... ...+.+++.+||+.||++||++.|+++
T Consensus 233 ~~~~~--~~~~~~~~~---------~~~l~~li~~~L~~dp~~Rpt~~e~l~ 273 (343)
T 3dbq_A 233 IIDPN--HEIEFPDIP---------EKDLQDVLKCCLKRDPKQRISIPELLA 273 (343)
T ss_dssp HHCTT--SCCCCCCCS---------CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HhcCC--cccCCcccC---------CHHHHHHHHHHcCCChhHCCCHHHHHh
Confidence 11111 111111111 135779999999999999999999987
No 86
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=2e-39 Score=348.54 Aligned_cols=260 Identities=27% Similarity=0.440 Sum_probs=212.9
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEe
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 659 (933)
.++|++.+.||+|+||.||+|...+++.||||++.... ...+.+.+|++++++++||||+++++++. .+..++|||
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e 87 (279)
T 1qpc_A 12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS---MSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITE 87 (279)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS---SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc---ccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEe
Confidence 46899999999999999999998888899999997653 23568999999999999999999999986 456899999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCC
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPD 739 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~ 739 (933)
|+++++|.+++.... ...+++.+++.++.|+++||+|||+ ++|+||||||+||++++++.+||+|||++.....
T Consensus 88 ~~~~~~L~~~l~~~~---~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 161 (279)
T 1qpc_A 88 YMENGSLVDFLKTPS---GIKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIED 161 (279)
T ss_dssp CCTTCBHHHHTTSHH---HHTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred cCCCCCHHHHHhcCC---CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHhhEEEcCCCCEEECCCcccccccC
Confidence 999999999996421 1358999999999999999999999 8999999999999999999999999999987765
Q ss_pred CCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccC
Q 002346 740 GKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENIPKAID 818 (933)
Q Consensus 740 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 818 (933)
..........+++.|+|||.+.+..++.++||||||+++|||++ |+.||......+ .. ..... . ......
T Consensus 162 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~---~~---~~~~~-~--~~~~~~ 232 (279)
T 1qpc_A 162 NEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE---VI---QNLER-G--YRMVRP 232 (279)
T ss_dssp SCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH---HH---HHHHT-T--CCCCCC
T ss_pred cccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHH---HH---HHHhc-c--cCCCCc
Confidence 54444445567889999999988889999999999999999999 899997643321 11 11111 1 111111
Q ss_pred CCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcC
Q 002346 819 PNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWK 867 (933)
Q Consensus 819 ~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~ 867 (933)
... ...+.+++.+|++.+|++||++.++++.|+.+.....
T Consensus 233 ~~~---------~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~ 272 (279)
T 1qpc_A 233 DNC---------PEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATE 272 (279)
T ss_dssp TTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC-
T ss_pred ccc---------cHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhcc
Confidence 111 2467899999999999999999999999998876544
No 87
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=1e-39 Score=364.76 Aligned_cols=276 Identities=16% Similarity=0.221 Sum_probs=207.3
Q ss_pred hcCCccCCccccCCCeEEEEEEeCC------CcEEEEEEeccccCCch---------hHHHHHHHHHHHHhcCCCcceeE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPD------GTKIAVKRMESNTMGNK---------GLSEFQAEIAVLTKVRHRHLVAL 644 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~~~---------~~~~~~~E~~~l~~l~h~niv~l 644 (933)
.++|++.+.||+|+||.||+|.... ++.||||++........ ....+..|+..+..++||||+++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~ 113 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY 113 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence 4689999999999999999997654 47899999876531100 01223455666777889999999
Q ss_pred EeEeeeC----ceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEe
Q 002346 645 LGYCING----SERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILI 720 (933)
Q Consensus 645 ~~~~~~~----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill 720 (933)
++++... ...++||||+ +++|.+++... ...+++.+++.++.|++.||+|||+ ++|+||||||+|||+
T Consensus 114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~----~~~l~~~~~~~i~~qi~~~l~~lH~---~~iiHrDlkp~Nill 185 (364)
T 3op5_A 114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN----AKRFSRKTVLQLSLRILDILEYIHE---HEYVHGDIKASNLLL 185 (364)
T ss_dssp EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHT----TSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEE
T ss_pred EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhc----cCCCCHHHHHHHHHHHHHHHHHHHH---CCeEEecCCHHHEEE
Confidence 9998764 4579999999 99999999652 2569999999999999999999999 899999999999999
Q ss_pred c--CCCcEEEecccccccCCCCCcee------ecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCC
Q 002346 721 G--DDMRAKVADFGLVKNAPDGKYSV------ETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTM 792 (933)
Q Consensus 721 ~--~~~~~kl~DfGla~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~ 792 (933)
+ .++.+||+|||+++......... .....||+.|+|||++.+..++.++|||||||++|||+||+.||....
T Consensus 186 ~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~ 265 (364)
T 3op5_A 186 NYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNL 265 (364)
T ss_dssp ESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGT
T ss_pred ecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccc
Confidence 9 88999999999997654322111 123459999999999999999999999999999999999999998543
Q ss_pred CchhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCCCCc
Q 002346 793 PDDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKPATR 871 (933)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~~~~ 871 (933)
..... ..+..... ...++..+++.+... ....++.+++..|++.+|++||+++++++.|+.+++.......
T Consensus 266 ~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~~~~~~ 336 (364)
T 3op5_A 266 KDPKY--VRDSKIRY--RENIASLMDKCFPAA----NAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDD 336 (364)
T ss_dssp TCHHH--HHHHHHHH--HHCHHHHHHHHSCTT----CCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCCCC
T ss_pred cCHHH--HHHHHHHh--hhhHHHHHHHhcccc----cCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHcCCCcC
Confidence 32211 11111111 111111111111100 1124678999999999999999999999999999887655433
No 88
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=365.25 Aligned_cols=262 Identities=23% Similarity=0.322 Sum_probs=209.2
Q ss_pred cHHHHHHHhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC-CchhHHHHHHHHHHHHhcCCCcceeEEeEee
Q 002346 572 SIEVLRQVTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKVRHRHLVALLGYCI 649 (933)
Q Consensus 572 ~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 649 (933)
...+.+...++|++.+.||+|+||.||++.. .+|+.||+|++.+... .....+.+.+|+.++..++||||+++++++.
T Consensus 52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 131 (412)
T 2vd5_A 52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQ 131 (412)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence 3445555678999999999999999999966 4799999999975422 1223456889999999999999999999999
Q ss_pred eCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEe
Q 002346 650 NGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVA 729 (933)
Q Consensus 650 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~ 729 (933)
+.+..|+||||+++|+|.+++... ...+++..++.++.||+.||+|||+ ++|+||||||+|||++.++++||+
T Consensus 132 ~~~~~~lVmE~~~gg~L~~~l~~~----~~~l~~~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILld~~g~vkL~ 204 (412)
T 2vd5_A 132 DENYLYLVMEYYVGGDLLTLLSKF----GERIPAEMARFYLAEIVMAIDSVHR---LGYVHRDIKPDNILLDRCGHIRLA 204 (412)
T ss_dssp CSSEEEEEECCCCSCBHHHHHHHH----SSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEEC
T ss_pred eCCEEEEEEcCCCCCcHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccCHHHeeecCCCCEEEe
Confidence 999999999999999999999652 1368999999999999999999999 899999999999999999999999
Q ss_pred cccccccCCCCCceeecccccccCcccccccC-------CCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHH
Q 002346 730 DFGLVKNAPDGKYSVETRLAGTFGYLAPEYAA-------TGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTW 802 (933)
Q Consensus 730 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~ 802 (933)
|||+++.............+||+.|+|||++. ...++.++|||||||++|||++|+.||......+.
T Consensus 205 DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~------ 278 (412)
T 2vd5_A 205 DFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAET------ 278 (412)
T ss_dssp CCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH------
T ss_pred echhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHH------
Confidence 99999877655443444568999999999986 45789999999999999999999999976543221
Q ss_pred HHHHhhc--cCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCC---CCHHHHHH
Q 002346 803 FRRVLIS--KENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQR---PDMGHAVN 857 (933)
Q Consensus 803 ~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~R---Ps~~evl~ 857 (933)
+..+... ....+. .+..+ ..++.+++.+||+ +|++| |+++|+++
T Consensus 279 ~~~i~~~~~~~~~p~-~~~~~---------s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~ 327 (412)
T 2vd5_A 279 YGKIVHYKEHLSLPL-VDEGV---------PEEARDFIQRLLC-PPETRLGRGGAGDFRT 327 (412)
T ss_dssp HHHHHTHHHHCCCC-----CC---------CHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred HHHHHhcccCcCCCc-cccCC---------CHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence 1111111 111111 11112 1357799999999 99998 58888865
No 89
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=2.4e-39 Score=349.68 Aligned_cols=260 Identities=27% Similarity=0.433 Sum_probs=216.6
Q ss_pred HhcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
..++|++.+.||+|+||.||+|... ++..||+|++... ....+++.+|+.++++++||||+++++++.++...++|
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v 87 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED---TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 87 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC---STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEE
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEE
Confidence 3578999999999999999999664 5889999999754 33467899999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+++++|.+++... ....+++..++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||++...
T Consensus 88 ~e~~~~~~L~~~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~ 161 (288)
T 3kfa_A 88 TEFMTYGNLLDYLREC---NRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLM 161 (288)
T ss_dssp EECCTTEEHHHHHHHC---CTTTSCHHHHHHHHHHHHHHHHHHHH---HTCCCSCCSGGGEEECGGGCEEECCCCGGGTS
T ss_pred EEcCCCCcHHHHHHhc---ccCCccHhHHHHHHHHHHHHHHHHHH---CCccCCCCCcceEEEcCCCCEEEccCccceec
Confidence 9999999999999652 23568999999999999999999999 89999999999999999999999999999877
Q ss_pred CCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCCCcc
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENIPKA 816 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (933)
............|++.|+|||++.+..++.++||||||+++|||++ |+.||......... ..+.. . ....
T Consensus 162 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~---~~~~~----~--~~~~ 232 (288)
T 3kfa_A 162 TGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVY---ELLEK----D--YRME 232 (288)
T ss_dssp CSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHH---HHHHT----T--CCCC
T ss_pred cCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHH---HHHhc----c--CCCC
Confidence 6655555555678899999999998899999999999999999999 99999765433221 11111 1 1111
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 817 IDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 817 ~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
..... ...+.+++.+|++.||++||++.++++.|+.+...
T Consensus 233 ~~~~~---------~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~ 272 (288)
T 3kfa_A 233 RPEGC---------PEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE 272 (288)
T ss_dssp CCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCCC---------CHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHh
Confidence 11111 14578999999999999999999999999887654
No 90
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=9e-40 Score=359.19 Aligned_cols=250 Identities=25% Similarity=0.406 Sum_probs=195.6
Q ss_pred hcCCccCCccccCCCeEEEEEEe----CCCcEEEEEEeccccCC--chhHHHHHHHHHHHHhcCCCcceeEEeEeeeCce
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL----PDGTKIAVKRMESNTMG--NKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSE 653 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 653 (933)
.++|++.+.||+|+||.||++.. .+++.||+|+++..... ......+.+|+.++++++||||+++++++..++.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 46899999999999999999975 47899999999865321 2334668899999999999999999999999999
Q ss_pred eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccc
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGL 733 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGl 733 (933)
.++||||+++++|.+++... ..+++.+++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||+
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~Nill~~~~~~kl~Dfg~ 167 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLERE-----GIFMEDTACFYLAEISMALGHLHQ---KGIIYRDLKPENIMLNHQGHVKLTDFGL 167 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTSCEEECCCSC
T ss_pred EEEEEeCCCCCcHHHHHHhC-----CCCCHHHHHHHHHHHHHHHHHHHh---CCEEcccCCHHHeEECCCCcEEEEeCCc
Confidence 99999999999999999652 458999999999999999999999 8999999999999999999999999999
Q ss_pred cccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCC
Q 002346 734 VKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENI 813 (933)
Q Consensus 734 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (933)
++...... .......||+.|+|||++.+..++.++||||||+++|||++|+.||....... ....+......+
T Consensus 168 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~------~~~~i~~~~~~~ 240 (327)
T 3a62_A 168 CKESIHDG-TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKK------TIDKILKCKLNL 240 (327)
T ss_dssp C-----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH------HHHHHHHTCCCC
T ss_pred ccccccCC-ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHH------HHHHHHhCCCCC
Confidence 87543322 12334679999999999998899999999999999999999999997653221 112222222222
Q ss_pred CcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCC-----CHHHHHH
Q 002346 814 PKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRP-----DMGHAVN 857 (933)
Q Consensus 814 ~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RP-----s~~evl~ 857 (933)
+. .+ ...+.+++.+||+.||++|| ++.|+++
T Consensus 241 p~----~~---------~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 241 PP----YL---------TQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp CT----TS---------CHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred CC----CC---------CHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 21 11 13577999999999999999 6677765
No 91
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=2.7e-39 Score=353.76 Aligned_cols=265 Identities=24% Similarity=0.394 Sum_probs=214.7
Q ss_pred hcCCccCCccccCCCeEEEEEEe------CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCc
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL------PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGS 652 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 652 (933)
.++|++.+.||+|+||.||+|.. .+++.||||++.... .....+.+.+|+.+++++ +||||+++++++..++
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~ 100 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA-HLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG 100 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcch-hHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence 46899999999999999999964 357899999997653 334567899999999999 9999999999999999
Q ss_pred eeEEEEeecCCCChhhHhhhcccC-------------CCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEE
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDH-------------GYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNIL 719 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~-------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nil 719 (933)
..++||||+++|+|.+++...... ....+++.+++.++.|+++||+|||+ ++|+||||||+||+
T Consensus 101 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil 177 (313)
T 1t46_A 101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNIL 177 (313)
T ss_dssp SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEE
T ss_pred CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCccceEE
Confidence 999999999999999999763211 12358999999999999999999999 89999999999999
Q ss_pred ecCCCcEEEecccccccCCCCCc-eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhh
Q 002346 720 IGDDMRAKVADFGLVKNAPDGKY-SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRA 797 (933)
Q Consensus 720 l~~~~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~ 797 (933)
++.++.+||+|||+++....... .......||+.|+|||++.+..++.++||||||+++|||++ |+.||........
T Consensus 178 ~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~- 256 (313)
T 1t46_A 178 LTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK- 256 (313)
T ss_dssp EETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH-
T ss_pred EcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhH-
Confidence 99999999999999986654432 22334567889999999988899999999999999999999 9999976543222
Q ss_pred HHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 798 HLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
....... . ......... ...+.+++.+|++.||++||++.|+++.|++++..
T Consensus 257 -~~~~~~~----~--~~~~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 308 (313)
T 1t46_A 257 -FYKMIKE----G--FRMLSPEHA---------PAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE 308 (313)
T ss_dssp -HHHHHHH----T--CCCCCCTTS---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -HHHHhcc----C--CCCCCcccC---------CHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence 1111111 1 111111111 24578999999999999999999999999987654
No 92
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=4.3e-39 Score=356.85 Aligned_cols=257 Identities=25% Similarity=0.379 Sum_probs=194.0
Q ss_pred HhcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
+.++|++.+.||+|+||.||+|... +++.||||++.... ..+.+.+|+.++++++||||+++++++..+...++|
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 126 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV----DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLV 126 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC--------------CHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch----hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEE
Confidence 4678999999999999999999664 58899999997542 235788999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecC---CCcEEEeccccc
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGD---DMRAKVADFGLV 734 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~---~~~~kl~DfGla 734 (933)
|||+++|+|.+++.. ...+++.+++.++.|+++||+|||+ .+|+||||||+||+++. ++.+||+|||++
T Consensus 127 ~e~~~~~~L~~~l~~-----~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a 198 (349)
T 2w4o_A 127 LELVTGGELFDRIVE-----KGYYSERDAADAVKQILEAVAYLHE---NGIVHRDLKPENLLYATPAPDAPLKIADFGLS 198 (349)
T ss_dssp ECCCCSCBHHHHHTT-----CSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESSSSTTCCEEECCCC--
T ss_pred EEeCCCCCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCcccEEEecCCCCCCEEEccCccc
Confidence 999999999999954 2458999999999999999999999 89999999999999975 889999999999
Q ss_pred ccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCC
Q 002346 735 KNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIP 814 (933)
Q Consensus 735 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (933)
+...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||........ . ............
T Consensus 199 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~--~---~~~i~~~~~~~~ 271 (349)
T 2w4o_A 199 KIVEHQV--LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQF--M---FRRILNCEYYFI 271 (349)
T ss_dssp ----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHH--H---HHHHHTTCCCCC
T ss_pred cccCccc--ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHH--H---HHHHHhCCCccC
Confidence 8654322 22345799999999999998999999999999999999999999976543221 1 112222111111
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCCC
Q 002346 815 KAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKPA 869 (933)
Q Consensus 815 ~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~~ 869 (933)
....+. ....+.+++.+|++.||++||++.|+++ ++|...
T Consensus 272 ~~~~~~---------~~~~~~~li~~~L~~dP~~Rpt~~e~l~------hp~~~~ 311 (349)
T 2w4o_A 272 SPWWDE---------VSLNAKDLVRKLIVLDPKKRLTTFQALQ------HPWVTG 311 (349)
T ss_dssp TTTTTT---------SCHHHHHHHHTTSCSSGGGSCCHHHHHH------STTTTS
T ss_pred Cchhhh---------CCHHHHHHHHHHccCChhhCcCHHHHhc------CcccCC
Confidence 111111 1245779999999999999999999987 667653
No 93
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=8.1e-39 Score=344.71 Aligned_cols=254 Identities=23% Similarity=0.380 Sum_probs=209.5
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
+.++|++.+.||+|+||.||+|.. .+++.||+|++..........+.+.+|+.++++++||||+++++++..+...++|
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v 83 (284)
T 3kk8_A 4 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 83 (284)
T ss_dssp TTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEE
Confidence 357899999999999999999965 5689999999987766666678899999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCc---EEEeccccc
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMR---AKVADFGLV 734 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~---~kl~DfGla 734 (933)
|||+++++|.+++... ..+++.++..++.|++.||+|||+ .+|+||||||+||+++.++. +||+|||++
T Consensus 84 ~e~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~ 155 (284)
T 3kk8_A 84 FDLVTGGELFEDIVAR-----EFYSEADASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLA 155 (284)
T ss_dssp ECCCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSTTCCEEECCCTTC
T ss_pred EecCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCcCcCCCCHHHEEEecCCCCCcEEEeeceee
Confidence 9999999999988652 458999999999999999999999 89999999999999987655 999999999
Q ss_pred ccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCC
Q 002346 735 KNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIP 814 (933)
Q Consensus 735 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (933)
........ .....||+.|+|||++.+..++.++||||||+++|||++|+.||....... ... .........+
T Consensus 156 ~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~---~~~---~~~~~~~~~~ 227 (284)
T 3kk8_A 156 IEVNDSEA--WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR---LYA---QIKAGAYDYP 227 (284)
T ss_dssp EECCSSCB--CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHH---HHHHTCCCCC
T ss_pred EEcccCcc--ccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhH---HHH---HHHhccccCC
Confidence 86654332 234579999999999999999999999999999999999999997653221 111 1111111111
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 815 KAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 815 ~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
...... ....+.+++.+|++.||++||+++|+++
T Consensus 228 ~~~~~~---------~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 228 SPEWDT---------VTPEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp TTTTTT---------SCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred chhhcc---------cCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 111011 1135779999999999999999999986
No 94
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=3.5e-39 Score=355.94 Aligned_cols=253 Identities=23% Similarity=0.377 Sum_probs=201.2
Q ss_pred HhcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCc-----
Q 002346 579 VTDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGS----- 652 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----- 652 (933)
..++|++.+.||+|+||.||+|... +|+.||||++.... .....+.+.+|+.++++++||||+++++++.+..
T Consensus 4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 82 (332)
T 3qd2_B 4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPN-RELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQ 82 (332)
T ss_dssp HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCS-TTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHH
T ss_pred hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCC-chhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhh
Confidence 3468999999999999999999664 79999999997653 3445678999999999999999999999986543
Q ss_pred ----------------------------------------------------eeEEEEeecCCCChhhHhhhcccCCCCC
Q 002346 653 ----------------------------------------------------ERLLVYEYMPRGTLAQHLFEWHDHGYTP 680 (933)
Q Consensus 653 ----------------------------------------------------~~~lv~e~~~~gsL~~~l~~~~~~~~~~ 680 (933)
..++||||+++++|.+++.... ....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~ 160 (332)
T 3qd2_B 83 EEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRC--SLED 160 (332)
T ss_dssp HHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCC--SGGG
T ss_pred hhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhccc--Cccc
Confidence 2789999999999999997632 2345
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCCCCc-----------eeecccc
Q 002346 681 LTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPDGKY-----------SVETRLA 749 (933)
Q Consensus 681 l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~~~~-----------~~~~~~~ 749 (933)
.++..++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||+++....... .......
T Consensus 161 ~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (332)
T 3qd2_B 161 REHGVCLHIFIQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQV 237 (332)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHh---CCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccC
Confidence 6788899999999999999999 8999999999999999999999999999987654321 1223457
Q ss_pred cccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHH
Q 002346 750 GTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIE 829 (933)
Q Consensus 750 gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 829 (933)
||+.|+|||++.+..++.++||||||+++|||++|..|+.. .... ..... .... ......
T Consensus 238 gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~-----~~~~---~~~~~--~~~~----------~~~~~~ 297 (332)
T 3qd2_B 238 GTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQME-----RVRI---ITDVR--NLKF----------PLLFTQ 297 (332)
T ss_dssp -CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHH-----HHHH---HHHHH--TTCC----------CHHHHH
T ss_pred CCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhH-----HHHH---HHHhh--ccCC----------Cccccc
Confidence 99999999999998999999999999999999998765421 1111 11111 1111 122233
Q ss_pred HHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 830 SIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 830 ~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
....+.+++.+||+.||++||+++|+++
T Consensus 298 ~~~~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 298 KYPQEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp HCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred CChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence 3456789999999999999999999987
No 95
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=9.1e-39 Score=344.88 Aligned_cols=255 Identities=29% Similarity=0.547 Sum_probs=204.0
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchh-----HHHHHHHHHHHHhcCCCcceeEEeEeeeCce
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKG-----LSEFQAEIAVLTKVRHRHLVALLGYCINGSE 653 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 653 (933)
.++|++.+.||+|+||.||+|.. .+++.||+|++......... .+++.+|+.++++++||||+++++++.+..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 36789999999999999999965 57899999998765432221 268999999999999999999999986655
Q ss_pred eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCC--eEecCCCCCcEEecCCCc-----E
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQS--FIHRDLKPSNILIGDDMR-----A 726 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dik~~Nill~~~~~-----~ 726 (933)
++||||+++|+|.+++... ...+++..++.++.|+++||+|||+ ++ |+||||||+||+++.++. +
T Consensus 97 -~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~~l~~~l~~lH~---~~~~ivH~dikp~Nil~~~~~~~~~~~~ 168 (287)
T 4f0f_A 97 -RMVMEFVPCGDLYHRLLDK----AHPIKWSVKLRLMLDIALGIEYMQN---QNPPIVHRDLRSPNIFLQSLDENAPVCA 168 (287)
T ss_dssp -EEEEECCTTCBHHHHHHCT----TSCCCHHHHHHHHHHHHHHHHHHHT---SSSCCBCSCCSGGGEEESCCCTTCSCCE
T ss_pred -eEEEEecCCCCHHHHHhcc----cCCccHHHHHHHHHHHHHHHHHHHh---CCCCeecCCCCcceEEEeccCCCCceeE
Confidence 7999999999999988552 2569999999999999999999998 78 999999999999988776 9
Q ss_pred EEecccccccCCCCCceeecccccccCccccccc--CCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHH
Q 002346 727 KVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYA--ATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFR 804 (933)
Q Consensus 727 kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~--~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~ 804 (933)
||+|||+++..... .....||+.|+|||++ ....++.++||||||+++|||++|+.||........... .
T Consensus 169 kl~Dfg~~~~~~~~----~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~-~--- 240 (287)
T 4f0f_A 169 KVADFGLSQQSVHS----VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFI-N--- 240 (287)
T ss_dssp EECCCTTCBCCSSC----EECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHH-H---
T ss_pred EeCCCCcccccccc----ccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHH-H---
Confidence 99999999854432 2346799999999998 445678999999999999999999999986544332111 1
Q ss_pred HHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhh
Q 002346 805 RVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPL 862 (933)
Q Consensus 805 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~ 862 (933)
... .......+.... ...+.+++.+||+.||++||+++|+++.|+++
T Consensus 241 ~~~--~~~~~~~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 241 MIR--EEGLRPTIPEDC---------PPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp HHH--HSCCCCCCCTTS---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred HHh--ccCCCCCCCccc---------CHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 111 111111122111 24578999999999999999999999998753
No 96
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.3e-39 Score=350.65 Aligned_cols=247 Identities=26% Similarity=0.336 Sum_probs=197.9
Q ss_pred hcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 657 (933)
.++|++.++||+|+||+||+|... +|+.||||++...........++..|+..+.++ +||||+++++++.+++..++|
T Consensus 56 ~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv 135 (311)
T 3p1a_A 56 QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQ 135 (311)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEE
Confidence 468999999999999999999664 799999999876654555555666777766666 899999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+ +++|.+++... ...+++.+++.++.|++.||+|||+ .+|+||||||+|||++.++.+||+|||+++..
T Consensus 136 ~e~~-~~~L~~~~~~~----~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~ 207 (311)
T 3p1a_A 136 TELC-GPSLQQHCEAW----GASLPEAQVWGYLRDTLLALAHLHS---QGLVHLDVKPANIFLGPRGRCKLGDFGLLVEL 207 (311)
T ss_dssp EECC-CCBHHHHHHHH----CSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECGGGCEEECCCTTCEEC
T ss_pred Eecc-CCCHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEECCCCCEEEccceeeeec
Confidence 9999 77999998663 2469999999999999999999999 89999999999999999999999999998866
Q ss_pred CCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
.... ......||+.|+|||++.+ .++.++|||||||++|||++|+.|+.... . + .... ....+..+
T Consensus 208 ~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~---~-----~-~~~~--~~~~~~~~ 273 (311)
T 3p1a_A 208 GTAG--AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGE---G-----W-QQLR--QGYLPPEF 273 (311)
T ss_dssp C--------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHH---H-----H-HHHT--TTCCCHHH
T ss_pred ccCC--CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCcc---H-----H-HHHh--ccCCCccc
Confidence 5432 2334579999999998875 79999999999999999999987765321 1 1 1111 11111111
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
... ....+.+++.+|++.||++||+++|+++
T Consensus 274 ~~~---------~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 274 TAG---------LSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp HTT---------SCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ccC---------CCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 111 2246789999999999999999999986
No 97
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-39 Score=349.80 Aligned_cols=259 Identities=31% Similarity=0.519 Sum_probs=202.3
Q ss_pred cCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEee
Q 002346 581 DNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYEY 660 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 660 (933)
++|++.+.||+|+||.||+|.. .++.||||++... ...+.|.+|++++++++||||+++++++.+ ..++||||
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~ 80 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE----SERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEY 80 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSST----THHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEEC
T ss_pred hHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecCh----hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEc
Confidence 5788999999999999999987 5789999998643 345789999999999999999999998863 47899999
Q ss_pred cCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCc-EEEecccccccCCC
Q 002346 661 MPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMR-AKVADFGLVKNAPD 739 (933)
Q Consensus 661 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~-~kl~DfGla~~~~~ 739 (933)
+++|+|.+++.... ....+++..++.++.|+++||+|||+...++|+||||||+||+++.++. +||+|||++.....
T Consensus 81 ~~~~~L~~~l~~~~--~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~ 158 (307)
T 2eva_A 81 AEGGSLYNVLHGAE--PLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT 158 (307)
T ss_dssp CTTCBHHHHHHCSS--SEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------
T ss_pred CCCCCHHHHHhccC--CCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccccc
Confidence 99999999996521 1235789999999999999999999854468999999999999998886 79999999875543
Q ss_pred CCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccCC
Q 002346 740 GKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAIDP 819 (933)
Q Consensus 740 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 819 (933)
. .....||+.|+|||++.+..++.++||||||+++|||++|+.||......... ..+. .. ....+. ...
T Consensus 159 ~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~--~~~~--~~--~~~~~~-~~~ 227 (307)
T 2eva_A 159 H----MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFR--IMWA--VH--NGTRPP-LIK 227 (307)
T ss_dssp ----------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHH--HHHH--HH--TTCCCC-CBT
T ss_pred c----cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHH--HHHH--Hh--cCCCCC-ccc
Confidence 2 12346999999999999989999999999999999999999999764332211 1111 11 111111 111
Q ss_pred CCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 820 NLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 820 ~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
.+ ...+.+++.+|++.||++||+++++++.|+.+...+..
T Consensus 228 ~~---------~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 267 (307)
T 2eva_A 228 NL---------PKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPG 267 (307)
T ss_dssp TC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCC
T ss_pred cc---------CHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccC
Confidence 11 13577999999999999999999999999988765543
No 98
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5.8e-39 Score=350.12 Aligned_cols=263 Identities=22% Similarity=0.314 Sum_probs=202.5
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC-chhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG-NKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
.++|++.+.||+|+||.||+|.. .+++.||+|++...... ....+.+.+|+.++++++||||+++++++..++..++|
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD 112 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence 47899999999999999999965 47899999999765432 33457899999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+++++|.+++... .++++.+++.++.|+++||+|||+ .+|+||||||+||+++.++.+||+|||++...
T Consensus 113 ~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~ 184 (309)
T 2h34_A 113 MRLINGVDLAAMLRRQ-----GPLAPPRAVAIVRQIGSALDAAHA---AGATHRDVKPENILVSADDFAYLVDFGIASAT 184 (309)
T ss_dssp EECCCCEEHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSCCC----
T ss_pred EEecCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHH---CcCCcCCCChHHEEEcCCCCEEEecCccCccc
Confidence 9999999999999752 468999999999999999999999 89999999999999999999999999999866
Q ss_pred CCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
............|++.|+|||++.+..++.++||||||+++|||++|+.||...... . ...........+...
T Consensus 185 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~----~~~~~~~~~~~~~~~ 257 (309)
T 2h34_A 185 TDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS---V----MGAHINQAIPRPSTV 257 (309)
T ss_dssp ------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH---H----HHHHHHSCCCCGGGT
T ss_pred cccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH---H----HHHHhccCCCCcccc
Confidence 554333334567999999999999889999999999999999999999999764221 1 111121111111222
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCC-CHHHHHHHHhhhhhhc
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRP-DMGHAVNVLGPLVEQW 866 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RP-s~~evl~~L~~~~~~~ 866 (933)
.+.+. ..+.+++.+||+.||++|| +++++++.|+.++...
T Consensus 258 ~~~~~---------~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~ 298 (309)
T 2h34_A 258 RPGIP---------VAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATA 298 (309)
T ss_dssp STTCC---------THHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC--
T ss_pred CCCCC---------HHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhh
Confidence 22222 3577999999999999999 9999999998775443
No 99
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=3.1e-39 Score=353.79 Aligned_cols=264 Identities=27% Similarity=0.439 Sum_probs=210.4
Q ss_pred CccCCccccCCCeEEEEEEe-----CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeee--CceeE
Q 002346 583 FSEANILGRGGFGVVYGGEL-----PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCIN--GSERL 655 (933)
Q Consensus 583 ~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~ 655 (933)
|++.+.||+|+||.||++.+ .+++.||||++.... .....+.+.+|++++++++||||+++++++.+ ....+
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 111 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA-GPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQ 111 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc-ChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEE
Confidence 38899999999999998854 268899999998653 44556789999999999999999999999987 46789
Q ss_pred EEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 656 LVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 656 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
+||||+++|+|.+++.. ..+++.+++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||+++
T Consensus 112 lv~e~~~~~~L~~~l~~------~~~~~~~~~~i~~~l~~~l~~LH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~ 182 (318)
T 3lxp_A 112 LVMEYVPLGSLRDYLPR------HSIGLAQLLLFAQQICEGMAYLHA---QHYIHRDLAARNVLLDNDRLVKIGDFGLAK 182 (318)
T ss_dssp EEECCCTTCBHHHHGGG------SCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCGGGCE
T ss_pred EEEecccCCcHHHHHhh------CCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCchheEEEcCCCCEEECCccccc
Confidence 99999999999999965 348999999999999999999999 899999999999999999999999999998
Q ss_pred cCCCCCce--eecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCc---------hhhHHHHHHH
Q 002346 736 NAPDGKYS--VETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPD---------DRAHLVTWFR 804 (933)
Q Consensus 736 ~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~---------~~~~~~~~~~ 804 (933)
........ ......|++.|+|||++.+..++.++||||||+++|||++|+.||...... ....... ..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~ 261 (318)
T 3lxp_A 183 AVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLR-LT 261 (318)
T ss_dssp ECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHH-HH
T ss_pred cccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHH-HH
Confidence 76654322 233456888999999999888999999999999999999999998753211 0111111 11
Q ss_pred HHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 805 RVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 805 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
........ ...... ....+.+++.+||+.||++||++.|+++.|+.+.+.+..
T Consensus 262 ~~~~~~~~--~~~~~~---------~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~ 314 (318)
T 3lxp_A 262 ELLERGER--LPRPDK---------CPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQG 314 (318)
T ss_dssp HHHHTTCC--CCCCTT---------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHhcccC--CCCCcc---------ccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhcc
Confidence 11111111 111111 124678999999999999999999999999998877654
No 100
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=2.7e-39 Score=355.63 Aligned_cols=258 Identities=26% Similarity=0.433 Sum_probs=201.3
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCc----EEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCcee
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGT----KIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSER 654 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~----~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 654 (933)
.++|++.+.||+|+||.||+|.. .+++ +||+|.+.... .....++|.+|+.++++++||||++++++|..+. .
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~ 91 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT-SPKANKEILDEAYVMASVDNPHVCRLLGICLTST-V 91 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC--------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-E
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeeccccc-CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-e
Confidence 36799999999999999999964 3444 35888876542 3445678999999999999999999999998754 7
Q ss_pred EEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccc
Q 002346 655 LLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLV 734 (933)
Q Consensus 655 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla 734 (933)
++||||+.+|+|.+++... ...+++..++.++.|+++||+|||+ ++|+||||||+|||++.++.+||+|||++
T Consensus 92 ~~v~e~~~~g~L~~~l~~~----~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIll~~~~~~kl~Dfg~a 164 (327)
T 3poz_A 92 QLITQLMPFGCLLDYVREH----KDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLA 164 (327)
T ss_dssp EEEEECCTTCBHHHHHHHS----TTSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCTTHH
T ss_pred EEEEEecCCCcHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCChheEEECCCCCEEEccCcce
Confidence 7899999999999999762 2468999999999999999999999 89999999999999999999999999999
Q ss_pred ccCCCCCc-eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCC
Q 002346 735 KNAPDGKY-SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKEN 812 (933)
Q Consensus 735 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (933)
+....... .......||+.|+|||++.+..++.++|||||||++|||+| |+.||........... ......
T Consensus 165 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~-------~~~~~~ 237 (327)
T 3poz_A 165 KLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSI-------LEKGER 237 (327)
T ss_dssp HHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHH-------HHTTCC
T ss_pred eEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHH-------HHcCCC
Confidence 86544322 22234467889999999999999999999999999999999 9999987544332111 111111
Q ss_pred CCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhh
Q 002346 813 IPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVE 864 (933)
Q Consensus 813 ~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~ 864 (933)
.+ ..+. ....+.+++.+||+.+|++||++.++++.|+.+..
T Consensus 238 ~~--~~~~---------~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~ 278 (327)
T 3poz_A 238 LP--QPPI---------CTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp CC--CCTT---------BCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred CC--CCcc---------CCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence 11 1111 12357799999999999999999999999988764
No 101
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-39 Score=357.30 Aligned_cols=247 Identities=25% Similarity=0.373 Sum_probs=201.8
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC-chhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG-NKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
++|.+.+.||+|+||.||+|.. .+++.||||++...... ......+.+|+.+++.++||||+++++++..+...++||
T Consensus 9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 88 (336)
T 3h4j_B 9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI 88 (336)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 6899999999999999999964 67899999998754321 222457899999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+ +|+|.+++... ..+++.+++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||++....
T Consensus 89 E~~-~g~l~~~l~~~-----~~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~ 159 (336)
T 3h4j_B 89 EYA-GGELFDYIVEK-----KRMTEDEGRRFFQQIICAIEYCHR---HKIVHRDLKPENLLLDDNLNVKIADFGLSNIMT 159 (336)
T ss_dssp CCC-CEEHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHHH---HTCCCCCCSTTTEEECTTCCEEECCSSCTBTTT
T ss_pred ECC-CCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCchhhEEEcCCCCEEEEEeccceecc
Confidence 999 78999988652 468999999999999999999999 899999999999999999999999999998665
Q ss_pred CCCceeecccccccCcccccccCCCCC-CCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAATGRV-TTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
.... .....||+.|+|||++.+..+ +.++|||||||++|||++|+.||......... .........+
T Consensus 160 ~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~----------~~i~~~~~~~ 227 (336)
T 3h4j_B 160 DGNF--LKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLF----------KKVNSCVYVM 227 (336)
T ss_dssp TSBT--TCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCB----------CCCCSSCCCC
T ss_pred CCcc--cccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHH----------HHHHcCCCCC
Confidence 4332 234579999999999988776 68999999999999999999999764322110 0000000001
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
... ....+.+++.+|++.||.+|||++|+++
T Consensus 228 p~~---------~s~~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 228 PDF---------LSPGAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp CTT---------SCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred ccc---------CCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 111 1235779999999999999999999976
No 102
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=5.8e-39 Score=368.26 Aligned_cols=252 Identities=30% Similarity=0.454 Sum_probs=206.5
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCc-eeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGS-ERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~~lv~ 658 (933)
.++|++.+.||+|+||.||+|.. .|+.||||+++... ..+.|.+|+.++++++|||||++++++.... ..++||
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~-~~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~ 266 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVT 266 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEESSCT----TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEE
T ss_pred hHHeEEEeeecCcCCeeEEEEEe-cCCeEEEEEeCCch----HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEE
Confidence 46789999999999999999988 48899999997653 3468999999999999999999999987665 789999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+++|+|.+++... +...+++..++.++.|+++||+|||+ ++|+||||||+|||++.++.+||+|||+++...
T Consensus 267 e~~~~g~L~~~l~~~---~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~ 340 (450)
T 1k9a_A 267 EYMAKGSLVDYLRSR---GRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS 340 (450)
T ss_dssp ECCTTCBHHHHHHHH---CTTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred EecCCCcHHHHHHhc---CCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEECCCCCEEEeeCCCccccc
Confidence 999999999999763 22347999999999999999999999 899999999999999999999999999998544
Q ss_pred CCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
... ....+++.|+|||++.+..++.++||||||+++|||++ |+.||......+.. . .... .... ..
T Consensus 341 ~~~----~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~---~---~i~~-~~~~--~~ 407 (450)
T 1k9a_A 341 STQ----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVV---P---RVEK-GYKM--DA 407 (450)
T ss_dssp ----------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHH---H---HHHT-TCCC--CC
T ss_pred ccc----cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHH---H---HHHc-CCCC--CC
Confidence 321 22367889999999999999999999999999999998 99999865443221 1 1111 1111 11
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhh
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVE 864 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~ 864 (933)
.... ...+.+++.+||+.||++||++.++++.|+.+..
T Consensus 408 p~~~---------~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~ 445 (450)
T 1k9a_A 408 PDGC---------PPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRT 445 (450)
T ss_dssp CTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCcC---------CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence 1111 2457799999999999999999999999988754
No 103
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=4e-39 Score=363.49 Aligned_cols=275 Identities=17% Similarity=0.257 Sum_probs=209.9
Q ss_pred hcCCccCCccccC--CCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEE
Q 002346 580 TDNFSEANILGRG--GFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLL 656 (933)
Q Consensus 580 ~~~~~~~~~lg~G--~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 656 (933)
.++|++.+.||+| +||.||+|... +|+.||||++..........+.+.+|+.+++.++|||||++++++.+++..++
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 103 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV 103 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence 3689999999999 99999999664 79999999998776666667889999999999999999999999999999999
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKN 736 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~ 736 (933)
||||+++|+|.+++.... ...+++..++.++.|+++||+|||+ ++|+||||||+|||++.++.+||+|||.+..
T Consensus 104 v~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~ 177 (389)
T 3gni_B 104 VTSFMAYGSAKDLICTHF---MDGMNELAIAYILQGVLKALDYIHH---MGYVHRSVKASHILISVDGKVYLSGLRSNLS 177 (389)
T ss_dssp EEECCTTCBHHHHHHHTC---TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCGGGCEE
T ss_pred EEEccCCCCHHHHHhhhc---ccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEccccccee
Confidence 999999999999997632 2458999999999999999999999 8999999999999999999999999998864
Q ss_pred CCCCCc------eeecccccccCcccccccCC--CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhh
Q 002346 737 APDGKY------SVETRLAGTFGYLAPEYAAT--GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLI 808 (933)
Q Consensus 737 ~~~~~~------~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~ 808 (933)
...... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.......... ........
T Consensus 178 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~--~~~~~~~~ 255 (389)
T 3gni_B 178 MISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLL--EKLNGTVP 255 (389)
T ss_dssp CEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHH--HC------
T ss_pred eccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHH--HHhcCCCC
Confidence 432211 11123478999999999987 578999999999999999999999997654332211 00000000
Q ss_pred ---cc-----CC-------------CCcccC--------CCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002346 809 ---SK-----EN-------------IPKAID--------PNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVL 859 (933)
Q Consensus 809 ---~~-----~~-------------~~~~~d--------~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L 859 (933)
.. .. ..+.+. ...............+.+++.+||+.||++||+++|+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~-- 333 (389)
T 3gni_B 256 CLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLN-- 333 (389)
T ss_dssp --------------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTT--
T ss_pred ccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhc--
Confidence 00 00 000000 000000011122345789999999999999999999986
Q ss_pred hhhhhhcCC
Q 002346 860 GPLVEQWKP 868 (933)
Q Consensus 860 ~~~~~~~~~ 868 (933)
++|..
T Consensus 334 ----hp~f~ 338 (389)
T 3gni_B 334 ----HSFFK 338 (389)
T ss_dssp ----SGGGG
T ss_pred ----CHHHH
Confidence 56654
No 104
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.8e-39 Score=353.26 Aligned_cols=278 Identities=22% Similarity=0.283 Sum_probs=207.0
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
.++|++.+.||+|+||.||+|.. .+|+.||||++..........+.+.+|++++++++||||+++++++..++..++||
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 81 (311)
T 4agu_A 2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVF 81 (311)
T ss_dssp -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEE
Confidence 36899999999999999999966 45899999999776555555678899999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+++++|.+++.. ...+++..+..++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||++....
T Consensus 82 e~~~~~~l~~~~~~-----~~~~~~~~~~~i~~~l~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 153 (311)
T 4agu_A 82 EYCDHTVLHELDRY-----QRGVPEHLVKSITWQTLQAVNFCHK---HNCIHRDVKPENILITKHSVIKLCDFGFARLLT 153 (311)
T ss_dssp ECCSEEHHHHHHHT-----SSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred EeCCCchHHHHHhh-----hcCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCChhhEEEcCCCCEEEeeCCCchhcc
Confidence 99999999988754 2558999999999999999999999 899999999999999999999999999998665
Q ss_pred CCCceeecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHH--------HHhhc
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFR--------RVLIS 809 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~--------~~~~~ 809 (933)
.... ......||+.|+|||++.+ ..++.++||||+|+++|||++|+.||......+......... .....
T Consensus 154 ~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (311)
T 4agu_A 154 GPSD-YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFST 232 (311)
T ss_dssp -------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHT
T ss_pred Cccc-ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhccccccccccccc
Confidence 3322 2234578999999999865 578999999999999999999999998754433221111000 00000
Q ss_pred cCCCCc--ccCCCCCCC--hhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCCCCcC
Q 002346 810 KENIPK--AIDPNLNLD--EETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKPATRE 872 (933)
Q Consensus 810 ~~~~~~--~~d~~l~~~--~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~~~~~ 872 (933)
...... ..++.-... .........+.+++.+||+.||++|||++|+++ ++|....++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~------hp~f~~~~~ 293 (311)
T 4agu_A 233 NQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH------HPYFENIRE 293 (311)
T ss_dssp CGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT------SGGGTTCC-
T ss_pred ccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc------ChHHHhccC
Confidence 000000 000000000 000112345789999999999999999999986 677665443
No 105
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.7e-39 Score=357.61 Aligned_cols=266 Identities=24% Similarity=0.410 Sum_probs=209.5
Q ss_pred hcCCccCCccccCCCeEEEEEEe------CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCc
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL------PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGS 652 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 652 (933)
.++|++.+.||+|+||.||+|.. .++..||||++.... .....+.+.+|+.+++++ +||||+++++++..++
T Consensus 44 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 122 (344)
T 1rjb_A 44 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA-DSSEREALMSELKMMTQLGSHENIVNLLGACTLSG 122 (344)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred HHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEeccccc-CHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence 57899999999999999999974 246689999997543 334457899999999999 8999999999999999
Q ss_pred eeEEEEeecCCCChhhHhhhcccC------------------CCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCC
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDH------------------GYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLK 714 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~------------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik 714 (933)
..++||||+++|+|.+++...... ....+++.+++.++.|+++||+|||+ ++|+|||||
T Consensus 123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dik 199 (344)
T 1rjb_A 123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDLA 199 (344)
T ss_dssp SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH---TTEEETTCS
T ss_pred ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCC
Confidence 999999999999999999763211 11348999999999999999999999 899999999
Q ss_pred CCcEEecCCCcEEEecccccccCCCCC-ceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCC
Q 002346 715 PSNILIGDDMRAKVADFGLVKNAPDGK-YSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTM 792 (933)
Q Consensus 715 ~~Nill~~~~~~kl~DfGla~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~ 792 (933)
|+||+++.++.+||+|||++....... ........||+.|+|||.+.+..++.++||||||+++|||+| |+.||....
T Consensus 200 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 279 (344)
T 1rjb_A 200 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP 279 (344)
T ss_dssp GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred hhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCC
Confidence 999999999999999999998554332 223345578899999999988899999999999999999998 999997754
Q ss_pred CchhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhc
Q 002346 793 PDDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQW 866 (933)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~ 866 (933)
.... ... ..... ......... ...+.+++.+||+.||++||++.++++.|+.+....
T Consensus 280 ~~~~--~~~----~~~~~--~~~~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~ 336 (344)
T 1rjb_A 280 VDAN--FYK----LIQNG--FKMDQPFYA---------TEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADA 336 (344)
T ss_dssp CSHH--HHH----HHHTT--CCCCCCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC---
T ss_pred cHHH--HHH----HHhcC--CCCCCCCCC---------CHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHH
Confidence 3322 111 11111 111111111 245779999999999999999999999998876543
No 106
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=7.4e-39 Score=361.05 Aligned_cols=207 Identities=28% Similarity=0.455 Sum_probs=168.4
Q ss_pred HHHhcCCccCCccccCCCeEEEEEE-eCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC-CCcceeEEeEeeeCc--
Q 002346 577 RQVTDNFSEANILGRGGFGVVYGGE-LPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR-HRHLVALLGYCINGS-- 652 (933)
Q Consensus 577 ~~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~-- 652 (933)
..+.++|++.+.||+|+||.||+|. ..+|+.||||++..........+++.+|+.++.++. ||||+++++++...+
T Consensus 5 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~ 84 (388)
T 3oz6_A 5 RHVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDR 84 (388)
T ss_dssp HHHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSS
T ss_pred CcccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCC
Confidence 3456899999999999999999995 457999999999766555566778899999999997 999999999997544
Q ss_pred eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccc
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFG 732 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfG 732 (933)
..++||||++ ++|.+++.. ..+++..+..++.|+++||+|||+ .+|+||||||+|||++.++.+||+|||
T Consensus 85 ~~~lv~e~~~-~~L~~~~~~------~~~~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG 154 (388)
T 3oz6_A 85 DVYLVFDYME-TDLHAVIRA------NILEPVHKQYVVYQLIKVIKYLHS---GGLLHRDMKPSNILLNAECHVKVADFG 154 (388)
T ss_dssp CEEEEEECCS-EEHHHHHHH------TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEEecccC-cCHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHeEEcCCCCEEecCCc
Confidence 6899999997 699999865 468999999999999999999999 899999999999999999999999999
Q ss_pred ccccCCCC--------------------CceeecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCC
Q 002346 733 LVKNAPDG--------------------KYSVETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDT 791 (933)
Q Consensus 733 la~~~~~~--------------------~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~ 791 (933)
+++..... .....+..+||+.|+|||++.+ ..++.++||||+||++|||++|+.||...
T Consensus 155 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 234 (388)
T 3oz6_A 155 LSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGS 234 (388)
T ss_dssp TCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred ccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCC
Confidence 99865321 1112244689999999999876 67899999999999999999999999875
Q ss_pred CC
Q 002346 792 MP 793 (933)
Q Consensus 792 ~~ 793 (933)
..
T Consensus 235 ~~ 236 (388)
T 3oz6_A 235 ST 236 (388)
T ss_dssp SH
T ss_pred CH
Confidence 43
No 107
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=8.5e-39 Score=353.71 Aligned_cols=274 Identities=24% Similarity=0.403 Sum_probs=208.0
Q ss_pred HHHHHHHhcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc--CCCcceeEEeEeee
Q 002346 573 IEVLRQVTDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV--RHRHLVALLGYCIN 650 (933)
Q Consensus 573 ~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~l~~~~~~ 650 (933)
......+.++|++.+.||+|+||.||+|.. .++.||||++... ....+.+|.+++..+ +||||+++++++..
T Consensus 29 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~-----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~ 102 (337)
T 3mdy_A 29 LLVQRTIAKQIQMVKQIGKGRYGEVWMGKW-RGEKVAVKVFFTT-----EEASWFRETEIYQTVLMRHENILGFIAADIK 102 (337)
T ss_dssp HHHHTTHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEEEGG-----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEE
T ss_pred cccccccccceEEEeEeecCCCeEEEEEEE-CCceEEEEEEecc-----ccchhhhHHHHHHHHhhcCCCeeeEEEEEcc
Confidence 344456678999999999999999999987 4899999998643 224555666666555 89999999999987
Q ss_pred C----ceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhcc-----CCCeEecCCCCCcEEec
Q 002346 651 G----SERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLA-----QQSFIHRDLKPSNILIG 721 (933)
Q Consensus 651 ~----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~Dik~~Nill~ 721 (933)
. ...++||||+++|+|.+++.. ..+++.+++.++.|++.||+|||+.+ ..+|+||||||+||+++
T Consensus 103 ~~~~~~~~~lv~e~~~~g~L~~~l~~------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~ 176 (337)
T 3mdy_A 103 GTGSWTQLYLITDYHENGSLYDYLKS------TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVK 176 (337)
T ss_dssp SCGGGCEEEEEECCCTTCBHHHHHHH------CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEEC
T ss_pred CCCCCCceEEEEeccCCCcHHHHhhc------cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEEC
Confidence 7 688999999999999999965 45899999999999999999999810 12999999999999999
Q ss_pred CCCcEEEecccccccCCCCCcee---ecccccccCcccccccCCCCCCCc------cchHhHHHHHHHHHcC--------
Q 002346 722 DDMRAKVADFGLVKNAPDGKYSV---ETRLAGTFGYLAPEYAATGRVTTK------IDVYAFGVVLMETITG-------- 784 (933)
Q Consensus 722 ~~~~~kl~DfGla~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~------~Dv~SlG~~l~elltG-------- 784 (933)
.++.+||+|||+++......... .....||+.|+|||++.+..++.+ +|||||||++|||+||
T Consensus 177 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~ 256 (337)
T 3mdy_A 177 KNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVE 256 (337)
T ss_dssp TTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCC
T ss_pred CCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccc
Confidence 99999999999997655433221 124579999999999987766654 9999999999999999
Q ss_pred --CCCCCCCCCchhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhh
Q 002346 785 --RKALDDTMPDDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPL 862 (933)
Q Consensus 785 --~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~ 862 (933)
+.||....+.... ... ...... ... ..+.+...........++.+++.+||+.||++||++.++++.|+.+
T Consensus 257 ~~~~p~~~~~~~~~~-~~~-~~~~~~-~~~----~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l 329 (337)
T 3mdy_A 257 EYQLPYHDLVPSDPS-YED-MREIVC-IKK----LRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKM 329 (337)
T ss_dssp CCCCTTTTTSCSSCC-HHH-HHHHHT-TSC----CCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred cccccHhhhcCCCCc-hhh-hHHHHh-hhc----cCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHH
Confidence 6676554332211 111 111111 111 1122221222335566788999999999999999999999999988
Q ss_pred hhh
Q 002346 863 VEQ 865 (933)
Q Consensus 863 ~~~ 865 (933)
.+.
T Consensus 330 ~~~ 332 (337)
T 3mdy_A 330 SES 332 (337)
T ss_dssp HHT
T ss_pred Hhh
Confidence 654
No 108
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=1.3e-38 Score=349.40 Aligned_cols=259 Identities=22% Similarity=0.359 Sum_probs=210.8
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCc----hhHHHHHHHHHHHHhcCCCcceeEEeEeeeCce
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGN----KGLSEFQAEIAVLTKVRHRHLVALLGYCINGSE 653 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 653 (933)
+.++|++.+.||+|+||.||+|.. .+|+.||||++....... ...+++.+|+.++++++||||+++++++.++..
T Consensus 10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 89 (321)
T 2a2a_A 10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTD 89 (321)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred hhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCE
Confidence 357899999999999999999965 468999999997654322 136789999999999999999999999999999
Q ss_pred eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCC----cEEEe
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDM----RAKVA 729 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~----~~kl~ 729 (933)
.++||||+++++|.+++.. ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++ .+||+
T Consensus 90 ~~lv~e~~~~~~L~~~l~~-----~~~~~~~~~~~i~~qi~~aL~~lH~---~~ivH~dikp~NIl~~~~~~~~~~~kl~ 161 (321)
T 2a2a_A 90 VVLILELVSGGELFDFLAQ-----KESLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLI 161 (321)
T ss_dssp EEEEECCCCSCBHHHHHHT-----CSCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSCCEEEC
T ss_pred EEEEEEcCCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCChHHEEEecCCCCcCCEEEc
Confidence 9999999999999999965 2468999999999999999999999 8999999999999999888 79999
Q ss_pred cccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhc
Q 002346 730 DFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLIS 809 (933)
Q Consensus 730 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~ 809 (933)
|||++........ .....||+.|+|||++.+..++.++||||||+++|||++|+.||......+. .......
T Consensus 162 Dfg~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~------~~~i~~~ 233 (321)
T 2a2a_A 162 DFGLAHEIEDGVE--FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQET------LANITSV 233 (321)
T ss_dssp CCTTCEECCTTCC--CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHH------HHHHHTT
T ss_pred cCccceecCcccc--ccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHH------HHHHHhc
Confidence 9999987654322 2345799999999999989999999999999999999999999976432211 1111111
Q ss_pred cCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 810 KENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 810 ~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
....+..+.+ .....+.+++.+|++.||++||++.|+++ ++|..
T Consensus 234 ~~~~~~~~~~---------~~~~~~~~li~~~l~~dp~~Rps~~e~l~------hp~~~ 277 (321)
T 2a2a_A 234 SYDFDEEFFS---------HTSELAKDFIRKLLVKETRKRLTIQEALR------HPWIT 277 (321)
T ss_dssp CCCCCHHHHT---------TCCHHHHHHHHTTSCSSTTTSCCHHHHHH------STTTS
T ss_pred ccccChhhhc---------ccCHHHHHHHHHHcCCChhhCcCHHHHhc------Ccccc
Confidence 1111111111 11245779999999999999999999987 56654
No 109
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=2e-39 Score=358.64 Aligned_cols=250 Identities=24% Similarity=0.361 Sum_probs=205.0
Q ss_pred hcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccC-CchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCceeEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGSERLL 656 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 656 (933)
.++|++.+.||+|+||.||+|... +++.||+|++.+... .....+.+..|..++..+ +||+|+++++++.+.+..++
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 98 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF 98 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEE
Confidence 478999999999999999999664 578999999976532 223456788999999988 79999999999999999999
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKN 736 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~ 736 (933)
||||+++|+|.+++... ..+++.+++.++.|++.||+|||+ ++|+||||||+|||++.++.+||+|||+++.
T Consensus 99 v~E~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~vkL~DFG~a~~ 170 (353)
T 2i0e_A 99 VMEYVNGGDLMYHIQQV-----GRFKEPHAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKE 170 (353)
T ss_dssp EEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred EEeCCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCEEeccCCHHHEEEcCCCcEEEEeCCcccc
Confidence 99999999999999652 458999999999999999999999 8999999999999999999999999999986
Q ss_pred CCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcc
Q 002346 737 APDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKA 816 (933)
Q Consensus 737 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (933)
...... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||....... ....+.......+..
T Consensus 171 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~------~~~~i~~~~~~~p~~ 243 (353)
T 2i0e_A 171 NIWDGV-TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE------LFQSIMEHNVAYPKS 243 (353)
T ss_dssp CCCTTC-CBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCCCCCCTT
T ss_pred cccCCc-ccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHH------HHHHHHhCCCCCCCC
Confidence 433221 2345689999999999999999999999999999999999999997643221 222233222222221
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCH-----HHHHH
Q 002346 817 IDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDM-----GHAVN 857 (933)
Q Consensus 817 ~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~-----~evl~ 857 (933)
+ ..++.+++.+||+.||++||++ +++++
T Consensus 244 ----~---------s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~ 276 (353)
T 2i0e_A 244 ----M---------SKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 276 (353)
T ss_dssp ----S---------CHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred ----C---------CHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence 1 1357799999999999999964 55554
No 110
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=1e-38 Score=348.57 Aligned_cols=270 Identities=21% Similarity=0.335 Sum_probs=205.1
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC-CchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
.++|++.+.||+|+||.||+|.. .+|+.||||++..... .....+++.+|+.++++++||||+++++++..++..++|
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 110 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 110 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence 36799999999999999999964 5799999999976432 344567899999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+++++|.+++..... ....+++.+++.++.|+++||+|||+ .+|+||||||+||+++.++.+||+|||++...
T Consensus 111 ~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~ 186 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKK-QKRLIPERTVWKYFVQLCSALEHMHS---RRVMHRDIKPANVFITATGVVKLGDLGLGRFF 186 (310)
T ss_dssp EECCCSCBHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCC------
T ss_pred EecCCCCCHHHHHHHhcc-cccCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCcHHHEEEcCCCCEEEEeccceeee
Confidence 999999999999975332 23568999999999999999999999 89999999999999999999999999998865
Q ss_pred CCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
..... ......|++.|+|||++.+..++.++||||||+++|||++|+.||........ ....... ....+...
T Consensus 187 ~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~----~~~~~~~--~~~~~~~~ 259 (310)
T 2wqm_A 187 SSKTT-AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLY----SLCKKIE--QCDYPPLP 259 (310)
T ss_dssp -------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHH----HHHHHHH--TTCSCCCC
T ss_pred cCCCc-cccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHH----HHHHHhh--cccCCCCc
Confidence 44321 22345789999999999988999999999999999999999999975432211 1111111 11111111
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCCC
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKPA 869 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~~ 869 (933)
.... ...+.+++.+||+.||++||++.++++.|+++...+.+.
T Consensus 260 ~~~~---------~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~~ 302 (310)
T 2wqm_A 260 SDHY---------SEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTASS 302 (310)
T ss_dssp TTTS---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC--
T ss_pred cccc---------CHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhhh
Confidence 1111 135779999999999999999999999999998777654
No 111
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=1.9e-39 Score=354.42 Aligned_cols=255 Identities=25% Similarity=0.368 Sum_probs=196.5
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC-chhHHHHHHHHHHHHhcCCCcceeEEeEeeeCce----
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG-NKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSE---- 653 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 653 (933)
.++|++.+.||+|+||.||+|.. .+++.||||++...... ......+.+|+.++++++||||+++++++.....
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 47899999999999999999964 67899999999875432 3445689999999999999999999999876543
Q ss_pred eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccc
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGL 733 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGl 733 (933)
.++||||+++++|.+++.. ..++++.+++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||+
T Consensus 91 ~~lv~e~~~g~~L~~~l~~-----~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~ 162 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHT-----EGPMTPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGI 162 (311)
T ss_dssp EEEEEECCCEEEHHHHHHH-----HCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEETTSCEEECCCSC
T ss_pred cEEEEecCCCCCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCHHHEEEcCCCCEEEeeccC
Confidence 4999999999999999965 2468999999999999999999999 8999999999999999999999999999
Q ss_pred cccCCCCCc--eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccC
Q 002346 734 VKNAPDGKY--SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKE 811 (933)
Q Consensus 734 a~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~ 811 (933)
++....... .......||+.|+|||++.+..++.++||||||+++|||++|+.||....+... .........
T Consensus 163 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~------~~~~~~~~~ 236 (311)
T 3ork_A 163 ARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSV------AYQHVREDP 236 (311)
T ss_dssp C------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH------HHHHHHCCC
T ss_pred cccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHH------HHHHhcCCC
Confidence 986544322 122345799999999999988999999999999999999999999976543221 111111111
Q ss_pred CCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 812 NIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 812 ~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
..+....+. ....+.+++.+||+.||++||++.++++
T Consensus 237 ~~~~~~~~~---------~~~~l~~li~~~l~~dP~~R~~~~~~l~ 273 (311)
T 3ork_A 237 IPPSARHEG---------LSADLDAVVLKALAKNPENRYQTAAEMR 273 (311)
T ss_dssp CCHHHHSTT---------CCHHHHHHHHHHTCSSGGGSCSSHHHHH
T ss_pred CCcccccCC---------CCHHHHHHHHHHHhcCHhhChhhHHHHH
Confidence 111111111 1245779999999999999997776654
No 112
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=3.3e-39 Score=353.31 Aligned_cols=269 Identities=22% Similarity=0.339 Sum_probs=191.9
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
.++|++.+.||+|+||.||+|.. .+|+.||+|++.... .....+.+.+|+.++++++||||+++++++..++..++||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 82 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDS-EEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVF 82 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCS-TTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccc-ccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEE
Confidence 46799999999999999999965 468999999997653 2333467889999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccC-CCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 659 EYMPRGTLAQHLFEWHDH-GYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
||++ |+|.+++...... ....+++..+..++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||+++..
T Consensus 83 e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~ 158 (317)
T 2pmi_A 83 EFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHE---NKILHRDLKPQNLLINKRGQLKLGDFGLARAF 158 (317)
T ss_dssp ECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCSSCEET
T ss_pred EecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCChHHeEEcCCCCEEECcCccceec
Confidence 9997 6999998763321 22458999999999999999999999 89999999999999999999999999999866
Q ss_pred CCCCceeecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhh-ccCC-CC
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLI-SKEN-IP 814 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~-~~~~-~~ 814 (933)
..... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......+. ...+..... .... .+
T Consensus 159 ~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~---~~~i~~~~~~~~~~~~~ 234 (317)
T 2pmi_A 159 GIPVN-TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQ---LKLIFDIMGTPNESLWP 234 (317)
T ss_dssp TSCCC-CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH---HHHHHHHHCSCCTTTCG
T ss_pred CCCcc-cCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH---HHHHHHHhCCCChhHhh
Confidence 43221 1234578999999999876 4689999999999999999999999986543222 111111110 0000 00
Q ss_pred c-----ccCCCCC----CChh-------hHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 815 K-----AIDPNLN----LDEE-------TIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 815 ~-----~~d~~l~----~~~~-------~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
. ...+.+. .... .......+.+++.+||+.||++||+++|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 293 (317)
T 2pmi_A 235 SVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH 293 (317)
T ss_dssp GGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence 0 0000000 0000 0011246789999999999999999999976
No 113
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=4.5e-39 Score=353.10 Aligned_cols=260 Identities=20% Similarity=0.299 Sum_probs=186.5
Q ss_pred cCCcc---CCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC-CCcceeEEeEeeeCceeE
Q 002346 581 DNFSE---ANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR-HRHLVALLGYCINGSERL 655 (933)
Q Consensus 581 ~~~~~---~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~ 655 (933)
++|++ .+.||+|+||.||+|.. .+++.||||++... ....+.+|+.+++.+. ||||+++++++.++...+
T Consensus 8 ~~y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~ 82 (325)
T 3kn6_A 8 QHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKR-----MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTF 82 (325)
T ss_dssp HHEEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEGG-----GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred hccccccCCCccccCCCeEEEEEEECCCCCEEEEEEEChh-----hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEE
Confidence 34554 37899999999999965 46899999998643 3467889999999997 999999999999999999
Q ss_pred EEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCC---cEEEeccc
Q 002346 656 LVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDM---RAKVADFG 732 (933)
Q Consensus 656 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~---~~kl~DfG 732 (933)
+||||+++|+|.+++.. ...+++.++..++.|+++||+|||+ ++|+||||||+||+++.++ .+||+|||
T Consensus 83 lv~e~~~~~~L~~~l~~-----~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg 154 (325)
T 3kn6_A 83 LVMELLNGGELFERIKK-----KKHFSETEASYIMRKLVSAVSHMHD---VGVVHRDLKPENLLFTDENDNLEIKIIDFG 154 (325)
T ss_dssp EEECCCCSCBHHHHHHH-----CSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEC----CEEEECCCT
T ss_pred EEEEccCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCCeecCCCHHHEEEecCCCcccEEEeccc
Confidence 99999999999999976 2569999999999999999999999 8999999999999998765 89999999
Q ss_pred ccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchh-hHHHHHHHHHhhccC
Q 002346 733 LVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDR-AHLVTWFRRVLISKE 811 (933)
Q Consensus 733 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~-~~~~~~~~~~~~~~~ 811 (933)
+++....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||........ ...............
T Consensus 155 ~a~~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~ 233 (325)
T 3kn6_A 155 FARLKPPDNQ-PLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDF 233 (325)
T ss_dssp TCEECCC-----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCC
T ss_pred cceecCCCCC-cccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCC
Confidence 9986654332 22345789999999999999999999999999999999999999976433211 111122222222111
Q ss_pred CCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCCC
Q 002346 812 NIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKPA 869 (933)
Q Consensus 812 ~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~~ 869 (933)
..+ .........++.+++.+||+.||++||+++|+++ ++|...
T Consensus 234 ~~~---------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~------h~w~~~ 276 (325)
T 3kn6_A 234 SFE---------GEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY------NEWLQD 276 (325)
T ss_dssp CCC---------SHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT------CGGGCT
T ss_pred CCC---------cccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc------Chhhcc
Confidence 111 1111122356789999999999999999999875 677653
No 114
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=3.1e-39 Score=354.97 Aligned_cols=257 Identities=24% Similarity=0.445 Sum_probs=203.5
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcE----EEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeE
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTK----IAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERL 655 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~----vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 655 (933)
++|++.+.||+|+||.||+|.. .+++. ||+|.+.... .......+.+|+.++++++||||+++++++. +...+
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~ 90 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKS-GRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQ 90 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTT-SCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccc-cHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccE
Confidence 5789999999999999999965 34543 7888775442 2333456789999999999999999999986 56688
Q ss_pred EEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 656 LVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 656 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
+||||+++|+|.+++... ...+++..++.++.|+++||+|||+ ++|+||||||+|||++.++.+||+|||+++
T Consensus 91 ~v~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~ 163 (325)
T 3kex_A 91 LVTQYLPLGSLLDHVRQH----RGALGPQLLLNWGVQIAKGMYYLEE---HGMVHRNLAARNVLLKSPSQVQVADFGVAD 163 (325)
T ss_dssp EEEECCTTCBSHHHHHSS----GGGSCTTHHHHHHHHHHHHHHHHHH---TTCCCSCCSSTTEEESSSSCEEECSCSGGG
T ss_pred EEEEeCCCCCHHHHHHHc----cccCCHHHHHHHHHHHHHHHHHHHh---CCCCCCccchheEEECCCCeEEECCCCccc
Confidence 999999999999999652 2468899999999999999999999 899999999999999999999999999998
Q ss_pred cCCCCCce-eecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCC
Q 002346 736 NAPDGKYS-VETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENI 813 (933)
Q Consensus 736 ~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (933)
........ ......|++.|+|||++.+..++.++||||||+++|||++ |+.||........... +.. ......
T Consensus 164 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~---~~~--~~~~~~ 238 (325)
T 3kex_A 164 LLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDL---LEK--GERLAQ 238 (325)
T ss_dssp GSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHH---HHT--TCBCCC
T ss_pred ccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHH---HHc--CCCCCC
Confidence 76544322 2344568889999999998999999999999999999999 9999987544332211 111 011112
Q ss_pred CcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhh
Q 002346 814 PKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVE 864 (933)
Q Consensus 814 ~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~ 864 (933)
+...++ .+.+++.+||+.||++||++.++++.|+.+..
T Consensus 239 ~~~~~~-------------~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~ 276 (325)
T 3kex_A 239 PQICTI-------------DVYMVMVKCWMIDENIRPTFKELANEFTRMAR 276 (325)
T ss_dssp CTTBCT-------------TTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred CCcCcH-------------HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 222222 24589999999999999999999999988754
No 115
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=8e-39 Score=348.08 Aligned_cols=263 Identities=25% Similarity=0.435 Sum_probs=207.0
Q ss_pred cCCccCCccccCCCeEEEEEE-----eCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeC--ce
Q 002346 581 DNFSEANILGRGGFGVVYGGE-----LPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCING--SE 653 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~-----~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~ 653 (933)
++|++.+.||+|+||.||+|. ..+++.||||++.... .....+.+.+|+.++++++||||+++++++... ..
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 99 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES-GGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG 99 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CC
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccc-cchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCce
Confidence 568899999999999999997 3468999999998653 344567899999999999999999999999876 66
Q ss_pred eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccc
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGL 733 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGl 733 (933)
.++||||+++++|.+++... ...+++.+++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||+
T Consensus 100 ~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~ 172 (302)
T 4e5w_A 100 IKLIMEFLPSGSLKEYLPKN----KNKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLVESEHQVKIGDFGL 172 (302)
T ss_dssp EEEEEECCTTCBHHHHHHHH----TTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTT
T ss_pred EEEEEEeCCCCcHHHHHHhc----cccCCHHHHHHHHHHHHHHHHHhhc---CCcccCCCchheEEEcCCCCEEECcccc
Confidence 89999999999999999652 2458999999999999999999999 8999999999999999999999999999
Q ss_pred cccCCCCCc--eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCC---------chhhHHHHH
Q 002346 734 VKNAPDGKY--SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMP---------DDRAHLVTW 802 (933)
Q Consensus 734 a~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~---------~~~~~~~~~ 802 (933)
+........ .......||..|+|||++.+..++.++||||||+++|||++|+.|+..... .........
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 252 (302)
T 4e5w_A 173 TKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRL 252 (302)
T ss_dssp CEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHH
T ss_pred cccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHH
Confidence 987655432 223445788899999999988999999999999999999999988643210 011111111
Q ss_pred HHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhh
Q 002346 803 FRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLV 863 (933)
Q Consensus 803 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~ 863 (933)
. ........ ....+.. ...+.+++.+||+.||++||++.++++.|+.++
T Consensus 253 ~-~~~~~~~~--~~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 253 V-NTLKEGKR--LPCPPNC---------PDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp H-HHHHTTCC--CCCCTTC---------CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred H-HHHhccCC--CCCCCCC---------CHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 1 11111111 1111111 245789999999999999999999999998875
No 116
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=4.2e-39 Score=357.38 Aligned_cols=264 Identities=25% Similarity=0.311 Sum_probs=204.1
Q ss_pred HHHHhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC---CchhHHHHHHHHHHHHhcCCCcceeEEeEeeeC
Q 002346 576 LRQVTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM---GNKGLSEFQAEIAVLTKVRHRHLVALLGYCING 651 (933)
Q Consensus 576 l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 651 (933)
+..+.++|++.+.||+|+||.||+|.. .+++.||+|++..... .....+.+.+|+.++++++||||+++++++.++
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~ 100 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE 100 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence 356678999999999999999999955 5788999999875431 345567899999999999999999999999999
Q ss_pred ceeEEEEeecCCCChhhHhhhcccCC-----------------------------------CCCCCHHHHHHHHHHHHHH
Q 002346 652 SERLLVYEYMPRGTLAQHLFEWHDHG-----------------------------------YTPLTWKQRVTIALDVARG 696 (933)
Q Consensus 652 ~~~~lv~e~~~~gsL~~~l~~~~~~~-----------------------------------~~~l~~~~~~~i~~~i~~~ 696 (933)
+..++||||+++|+|.+++....... ...+++..++.++.|+++|
T Consensus 101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~ 180 (345)
T 3hko_A 101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA 180 (345)
T ss_dssp SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 99999999999999999985321110 1234678889999999999
Q ss_pred HHHhhhccCCCeEecCCCCCcEEecCCC--cEEEecccccccCCC---CCceeecccccccCcccccccCC--CCCCCcc
Q 002346 697 VEYLHSLAQQSFIHRDLKPSNILIGDDM--RAKVADFGLVKNAPD---GKYSVETRLAGTFGYLAPEYAAT--GRVTTKI 769 (933)
Q Consensus 697 l~~LH~~~~~~ivH~Dik~~Nill~~~~--~~kl~DfGla~~~~~---~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~ 769 (933)
|+|||+ .+|+||||||+||+++.++ .+||+|||+++.... ..........||+.|+|||++.+ ..++.++
T Consensus 181 l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~ 257 (345)
T 3hko_A 181 LHYLHN---QGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKC 257 (345)
T ss_dssp HHHHHH---TTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHH
T ss_pred HHHHHH---CCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHH
Confidence 999999 8999999999999998776 899999999985432 22222345679999999999865 6789999
Q ss_pred chHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCC
Q 002346 770 DVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQR 849 (933)
Q Consensus 770 Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~R 849 (933)
||||||+++|||++|+.||......+. ...........+.. ........+.+++.+|++.+|++|
T Consensus 258 DiwslG~il~el~~g~~pf~~~~~~~~------~~~~~~~~~~~~~~---------~~~~~~~~~~~li~~~l~~~p~~R 322 (345)
T 3hko_A 258 DAWSAGVLLHLLLMGAVPFPGVNDADT------ISQVLNKKLCFENP---------NYNVLSPLARDLLSNLLNRNVDER 322 (345)
T ss_dssp HHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHCCCCTTSG---------GGGGSCHHHHHHHHHHSCSCTTTS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCChHHH------HHHHHhcccccCCc---------ccccCCHHHHHHHHHHcCCChhHC
Confidence 999999999999999999976543221 11222211111111 001112457799999999999999
Q ss_pred CCHHHHHH
Q 002346 850 PDMGHAVN 857 (933)
Q Consensus 850 Ps~~evl~ 857 (933)
|++.++++
T Consensus 323 ps~~~~l~ 330 (345)
T 3hko_A 323 FDAMRALQ 330 (345)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHhc
Confidence 99999987
No 117
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=9.8e-39 Score=352.50 Aligned_cols=266 Identities=27% Similarity=0.447 Sum_probs=213.5
Q ss_pred hcCCccCCccccCCCeEEEEEEe--------CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCcceeEEeEeee
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL--------PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVALLGYCIN 650 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~--------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 650 (933)
.++|++.+.||+|+||.||+|.. .++..||||++.... .....+++.+|+.+++++ +||||+++++++..
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~ 112 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA-TEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 112 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC-cHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc
Confidence 47899999999999999999965 356789999997653 345567899999999999 89999999999999
Q ss_pred CceeEEEEeecCCCChhhHhhhcccC-----------CCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEE
Q 002346 651 GSERLLVYEYMPRGTLAQHLFEWHDH-----------GYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNIL 719 (933)
Q Consensus 651 ~~~~~lv~e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nil 719 (933)
.+..++||||+++|+|.+++...... ....+++.+++.++.|+++||+|||+ ++|+||||||+||+
T Consensus 113 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIl 189 (334)
T 2pvf_A 113 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVL 189 (334)
T ss_dssp SSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEE
T ss_pred CCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCccceEE
Confidence 99999999999999999999763221 12348999999999999999999999 89999999999999
Q ss_pred ecCCCcEEEecccccccCCCCCce-eecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhh
Q 002346 720 IGDDMRAKVADFGLVKNAPDGKYS-VETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRA 797 (933)
Q Consensus 720 l~~~~~~kl~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~ 797 (933)
++.++.+||+|||+++........ ......+++.|+|||++.+..++.++||||||+++|||++ |+.||......+
T Consensus 190 l~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-- 267 (334)
T 2pvf_A 190 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE-- 267 (334)
T ss_dssp ECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH--
T ss_pred EcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHH--
Confidence 999999999999999876554322 2234467889999999988889999999999999999999 999997653222
Q ss_pred HHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcC
Q 002346 798 HLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWK 867 (933)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~ 867 (933)
....+.. ... ....... ...+.+++.+||+.+|++||++.|+++.|+.+.....
T Consensus 268 -~~~~~~~----~~~--~~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~~ 321 (334)
T 2pvf_A 268 -LFKLLKE----GHR--MDKPANC---------TNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTT 321 (334)
T ss_dssp -HHHHHHH----TCC--CCCCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred -HHHHHhc----CCC--CCCCccC---------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccc
Confidence 1111111 110 0111111 1357799999999999999999999999999876544
No 118
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=4.8e-39 Score=359.10 Aligned_cols=266 Identities=22% Similarity=0.290 Sum_probs=207.8
Q ss_pred cHHHHHHHhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC-----CCcceeEE
Q 002346 572 SIEVLRQVTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR-----HRHLVALL 645 (933)
Q Consensus 572 ~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~l~ 645 (933)
++.....+.++|++.+.||+|+||.||+|.. .+++.||||++... ....+.+..|+.+++.++ ||||++++
T Consensus 26 ~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~ 102 (360)
T 3llt_A 26 SWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI---KKYTRSAKIEADILKKIQNDDINNNNIVKYH 102 (360)
T ss_dssp CCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEE
T ss_pred eeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc---hhhhhhhHHHHHHHHHhcccCCCCCCeeccc
Confidence 3334445578999999999999999999965 57899999998743 344567888999999996 99999999
Q ss_pred eEeeeCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecC---
Q 002346 646 GYCINGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGD--- 722 (933)
Q Consensus 646 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~--- 722 (933)
+++...+..++||||+ +++|.+++.... ...+++.+++.++.|++.||+|||+ ++|+||||||+|||++.
T Consensus 103 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~---~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~ 175 (360)
T 3llt_A 103 GKFMYYDHMCLIFEPL-GPSLYEIITRNN---YNGFHIEDIKLYCIEILKALNYLRK---MSLTHTDLKPENILLDDPYF 175 (360)
T ss_dssp EEEEETTEEEEEECCC-CCBHHHHHHHTT---TCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCTTC
T ss_pred ceeeECCeeEEEEcCC-CCCHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCcccEEEccccc
Confidence 9999999999999999 999999997622 2458999999999999999999999 89999999999999975
Q ss_pred ----------------------CCcEEEecccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHH
Q 002346 723 ----------------------DMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLME 780 (933)
Q Consensus 723 ----------------------~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~e 780 (933)
++.+||+|||+++...... ....||+.|+|||++.+..++.++|||||||++||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e 251 (360)
T 3llt_A 176 EKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH----GSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAE 251 (360)
T ss_dssp CEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCC----CSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred cccccchhcccccccccccccCCCCEEEEeccCceecCCCC----cCccCcccccCcHHHcCCCCCCccchHHHHHHHHH
Confidence 7899999999998654422 34579999999999999999999999999999999
Q ss_pred HHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCc-------------cc--------CCCCCCChhh------------
Q 002346 781 TITGRKALDDTMPDDRAHLVTWFRRVLISKENIPK-------------AI--------DPNLNLDEET------------ 827 (933)
Q Consensus 781 lltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--------d~~l~~~~~~------------ 827 (933)
|++|+.||......+.... +.... ...+. .+ .+........
T Consensus 252 ll~g~~pf~~~~~~~~~~~---~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 325 (360)
T 3llt_A 252 LYTGSLLFRTHEHMEHLAM---MESII---QPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYK 325 (360)
T ss_dssp HHHSSCSCCCSSHHHHHHH---HHHHT---CCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHH
T ss_pred HHHCCCCCCCCcHHHHHHH---HHHhc---CCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccc
Confidence 9999999986543222111 11111 00000 00 0000000000
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 828 IESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 828 ~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
......+.+++.+||+.||++|||++|+++
T Consensus 326 ~~~~~~l~~li~~~L~~dP~~Rpta~elL~ 355 (360)
T 3llt_A 326 IIKHELFCDFLYSILQIDPTLRPSPAELLK 355 (360)
T ss_dssp HCCCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred cchHHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence 001145779999999999999999999975
No 119
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=2.8e-39 Score=357.47 Aligned_cols=271 Identities=24% Similarity=0.393 Sum_probs=202.4
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHH--HHhcCCCcceeEEeEeee-----Cc
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAV--LTKVRHRHLVALLGYCIN-----GS 652 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~--l~~l~h~niv~l~~~~~~-----~~ 652 (933)
.++|++.+.||+|+||.||+|.. +++.||||++.... ...+..|.++ +..++||||+++++++.. ..
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~-----~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 85 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN-----RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRM 85 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG-----HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCE
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc-----hhhHHHHHHHHHHHhccCcchhhheecccccccCCCc
Confidence 36899999999999999999977 78999999986542 2344445444 445899999999986542 33
Q ss_pred eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCC---------CeEecCCCCCcEEecCC
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQ---------SFIHRDLKPSNILIGDD 723 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~---------~ivH~Dik~~Nill~~~ 723 (933)
..++||||+++|+|.+++.. ...++..++.++.|+++||+|||+ . +|+||||||+|||++.+
T Consensus 86 ~~~lv~e~~~~g~L~~~l~~------~~~~~~~~~~i~~qi~~~L~~LH~---~~~~~~~~~~~ivH~Dikp~Nill~~~ 156 (336)
T 3g2f_A 86 EYLLVMEYYPNGSLXKYLSL------HTSDWVSSCRLAHSVTRGLAYLHT---ELPRGDHYKPAISHRDLNSRNVLVKND 156 (336)
T ss_dssp EEEEEECCCTTCBHHHHHHH------CCBCHHHHHHHHHHHHHHHHHHHC---CBCCGGGCBCCEECSSCSGGGEEECTT
T ss_pred eEEEEEecCCCCcHHHHHhh------cccchhHHHHHHHHHHHHHHHHHh---hhccccccccceeecccccceEEEcCC
Confidence 66899999999999999965 345899999999999999999998 6 99999999999999999
Q ss_pred CcEEEecccccccCCCCC-------ceeecccccccCcccccccCC-------CCCCCccchHhHHHHHHHHHcCCCCCC
Q 002346 724 MRAKVADFGLVKNAPDGK-------YSVETRLAGTFGYLAPEYAAT-------GRVTTKIDVYAFGVVLMETITGRKALD 789 (933)
Q Consensus 724 ~~~kl~DfGla~~~~~~~-------~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~SlG~~l~elltG~~p~~ 789 (933)
+.+||+|||+++...... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.
T Consensus 157 ~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~ 236 (336)
T 3g2f_A 157 GTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLF 236 (336)
T ss_dssp SCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGS
T ss_pred CcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCC
Confidence 999999999998654322 111234579999999999976 456779999999999999999987775
Q ss_pred CCCCchhh--H---------HHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002346 790 DTMPDDRA--H---------LVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNV 858 (933)
Q Consensus 790 ~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~ 858 (933)
........ . .......... .......+..... ........+.+++.+||+.||++|||++|+++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~ 312 (336)
T 3g2f_A 237 PGESVPEYQMAFQTEVGNHPTFEDMQVLVS-REKQRPKFPEAWK---ENSLAVRSLKETIEDCWDQDAEARLTAQXAEER 312 (336)
T ss_dssp TTSCCCCCCCTTHHHHCSSCCHHHHHHHHT-TSCCCCCCCTTCC---CCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred CccchhHHHHhhhcccCCCchHHHHHhhhc-ccccCCCCCcccc---cccchHHHHHHHHHHHhcCChhhCcchHHHHHH
Confidence 43221100 0 0001111111 1111111222111 112344568899999999999999999999999
Q ss_pred HhhhhhhcCCC
Q 002346 859 LGPLVEQWKPA 869 (933)
Q Consensus 859 L~~~~~~~~~~ 869 (933)
|+++++.|...
T Consensus 313 L~~ll~~~~~~ 323 (336)
T 3g2f_A 313 MAELMMIWERN 323 (336)
T ss_dssp HHHHHHCCCC-
T ss_pred HHHHHHHHHhc
Confidence 99999998764
No 120
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=4.4e-39 Score=347.75 Aligned_cols=253 Identities=22% Similarity=0.389 Sum_probs=204.4
Q ss_pred hcCCccCCccccCCCeEEEEEEeC-CC-------cEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeC
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP-DG-------TKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCING 651 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 651 (933)
.++|.+.+.||+|+||.||+|... ++ ..||+|++... .....+.+.+|+.++++++||||+++++++..+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 84 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKA--HRNYSESFFEAASMMSKLSHKHLVLNYGVCVCG 84 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGG--GGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCT
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccc--cHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeC
Confidence 468999999999999999999543 23 57999998765 344567899999999999999999999999999
Q ss_pred ceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCc------
Q 002346 652 SERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMR------ 725 (933)
Q Consensus 652 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~------ 725 (933)
+..++||||+++|+|.+++... ...+++..++.++.|+++||+|||+ ++|+||||||+||+++.++.
T Consensus 85 ~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~~ 157 (289)
T 4fvq_A 85 DENILVQEFVKFGSLDTYLKKN----KNCINILWKLEVAKQLAAAMHFLEE---NTLIHGNVCAKNILLIREEDRKTGNP 157 (289)
T ss_dssp TCCEEEEECCTTCBHHHHHHHT----GGGCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEEECCBGGGTBC
T ss_pred CCCEEEEECCCCCCHHHHHHhC----CCCCCHHHHHHHHHHHHHHHHHHhh---CCeECCCcCcceEEEecCCccccccc
Confidence 9999999999999999999762 2348999999999999999999999 89999999999999998887
Q ss_pred --EEEecccccccCCCCCceeecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHH
Q 002346 726 --AKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTW 802 (933)
Q Consensus 726 --~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~ 802 (933)
+||+|||++...... ....|++.|+|||++.+ ..++.++||||||+++|||++|..|+........ ...
T Consensus 158 ~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~--~~~- 229 (289)
T 4fvq_A 158 PFIKLSDPGISITVLPK-----DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQR--KLQ- 229 (289)
T ss_dssp CEEEECCCCSCTTTSCH-----HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH--HHH-
T ss_pred ceeeeccCcccccccCc-----cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHH--HHH-
Confidence 999999998755432 23468999999999987 6789999999999999999996655544332211 111
Q ss_pred HHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 803 FRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 803 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
........+...++ .+.+++.+||+.||++||++.++++.|+++..+
T Consensus 230 ---~~~~~~~~~~~~~~-------------~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p 276 (289)
T 4fvq_A 230 ---FYEDRHQLPAPKAA-------------ELANLINNCMDYEPDHRPSFRAIIRDLNSLFTP 276 (289)
T ss_dssp ---HHHTTCCCCCCSSC-------------TTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC--
T ss_pred ---HhhccCCCCCCCCH-------------HHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCC
Confidence 11112222222222 356899999999999999999999999887644
No 121
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=2.2e-39 Score=379.38 Aligned_cols=261 Identities=30% Similarity=0.489 Sum_probs=212.3
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEe
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 659 (933)
.++|++.+.||+|+||.||+|.+.++..||||+++.... ..++|.+|+++|++++|||||++++++.+ ...++|||
T Consensus 266 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e 341 (535)
T 2h8h_A 266 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTE 341 (535)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS---CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEC
T ss_pred hhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC---CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeee
Confidence 467889999999999999999988888999999986532 34689999999999999999999999876 67899999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCC
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPD 739 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~ 739 (933)
|+++|+|.+++.... ...+++.+++.|+.||++||+|||+ ++|+||||||+|||++.++.+||+|||+++....
T Consensus 342 ~~~~gsL~~~l~~~~---~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 415 (535)
T 2h8h_A 342 YMSKGSLLDFLKGET---GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIED 415 (535)
T ss_dssp CCTTEEHHHHHSHHH---HTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCC
T ss_pred hhcCCcHHHHHhhcC---CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEEcCCCcEEEcccccceecCC
Confidence 999999999996522 2458999999999999999999999 8999999999999999999999999999987654
Q ss_pred CCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccC
Q 002346 740 GKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENIPKAID 818 (933)
Q Consensus 740 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 818 (933)
..........++..|+|||++..+.++.++|||||||++|||++ |+.||......+ ... .... .... ...
T Consensus 416 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~---~~~---~i~~-~~~~--~~~ 486 (535)
T 2h8h_A 416 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE---VLD---QVER-GYRM--PCP 486 (535)
T ss_dssp HHHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHH---HHH---HHHT-TCCC--CCC
T ss_pred CceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH---HHH---HHHc-CCCC--CCC
Confidence 33222233457789999999998899999999999999999999 899997653322 111 1111 1111 111
Q ss_pred CCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 819 PNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 819 ~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
... ...+.+++.+||+.||++||+++++++.|+.+.....+
T Consensus 487 ~~~---------~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~~~ 527 (535)
T 2h8h_A 487 PEC---------PESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEP 527 (535)
T ss_dssp TTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCCSC
T ss_pred CCC---------CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhccCc
Confidence 111 23577999999999999999999999999887654444
No 122
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=9.2e-39 Score=349.49 Aligned_cols=268 Identities=29% Similarity=0.426 Sum_probs=204.1
Q ss_pred HhcCCccCCccccCCCeEEEEEEeC----CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCc--
Q 002346 579 VTDNFSEANILGRGGFGVVYGGELP----DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGS-- 652 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-- 652 (933)
..++|.+.+.||+|+||.||+|... .++.||||++..........+.+.+|+.++++++||||+++++++.+..
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~ 111 (313)
T 3brb_A 32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQ 111 (313)
T ss_dssp CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC----
T ss_pred CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecccc
Confidence 3578999999999999999999653 3458999999877656666788999999999999999999999998755
Q ss_pred ---eeEEEEeecCCCChhhHhhhccc-CCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEE
Q 002346 653 ---ERLLVYEYMPRGTLAQHLFEWHD-HGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKV 728 (933)
Q Consensus 653 ---~~~lv~e~~~~gsL~~~l~~~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl 728 (933)
..++||||+++++|.+++..... .....+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||
T Consensus 112 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~~~~~~kl 188 (313)
T 3brb_A 112 GIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN---RNFLHRDLAARNCMLRDDMTVCV 188 (313)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCSGGGEEECTTSCEEE
T ss_pred CCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCcEEE
Confidence 34899999999999999854322 233569999999999999999999998 89999999999999999999999
Q ss_pred ecccccccCCCCCce-eecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHH
Q 002346 729 ADFGLVKNAPDGKYS-VETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRV 806 (933)
Q Consensus 729 ~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~ 806 (933)
+|||+++........ ......+++.|+|||.+.+..++.++||||||+++|||++ |+.||......... . ..
T Consensus 189 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~---~---~~ 262 (313)
T 3brb_A 189 ADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMY---D---YL 262 (313)
T ss_dssp CSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHH---H---HH
T ss_pred eecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHH---H---HH
Confidence 999999865543321 2233467889999999998899999999999999999999 88898765433221 1 11
Q ss_pred hhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcC
Q 002346 807 LISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWK 867 (933)
Q Consensus 807 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~ 867 (933)
.. . .. ....... ...+.+++.+|++.+|++||++.++++.|+.+.+...
T Consensus 263 ~~-~-~~-~~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp 311 (313)
T 3brb_A 263 LH-G-HR-LKQPEDC---------LDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLP 311 (313)
T ss_dssp HT-T-CC-CCCBTTC---------CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC-
T ss_pred Hc-C-CC-CCCCccc---------cHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcC
Confidence 11 1 11 1111111 1357899999999999999999999999998876543
No 123
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=1.5e-38 Score=352.48 Aligned_cols=273 Identities=24% Similarity=0.368 Sum_probs=215.8
Q ss_pred cHHHHHHHhcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHh--cCCCcceeEEeEee
Q 002346 572 SIEVLRQVTDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTK--VRHRHLVALLGYCI 649 (933)
Q Consensus 572 ~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~ 649 (933)
+......+.++|++.+.||+|+||.||+|.. +|+.||||++... ..+.+.+|++++.. ++||||+++++++.
T Consensus 33 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~-----~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~ 106 (342)
T 1b6c_B 33 PLLVQRTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR-----EERSWFREAEIYQTVMLRHENILGFIAADN 106 (342)
T ss_dssp CHHHHHHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG-----GHHHHHHHHHHHHHSCCCCTTBCCEEEEEE
T ss_pred ceeecccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch-----hHHHHHHHHHHHHHhhcCCCcEEEEEeeec
Confidence 3445567788999999999999999999987 6899999998643 34678889999888 68999999999998
Q ss_pred eCc----eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhh--------hccCCCeEecCCCCCc
Q 002346 650 NGS----ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLH--------SLAQQSFIHRDLKPSN 717 (933)
Q Consensus 650 ~~~----~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~Dik~~N 717 (933)
... ..++||||+++|+|.+++.. ..+++.+++.++.|+++||+||| + ++|+||||||+|
T Consensus 107 ~~~~~~~~~~lv~e~~~~g~L~~~l~~------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~---~~ivH~Dlkp~N 177 (342)
T 1b6c_B 107 KDNGTWTQLWLVSDYHEHGSLFDYLNR------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGK---PAIAHRDLKSKN 177 (342)
T ss_dssp CCCSSCCCEEEEECCCTTCBHHHHHHH------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCB---CEEECSCCSGGG
T ss_pred ccCCccceeEEEEeecCCCcHHHHHhc------cCccHHHHHHHHHHHHHHHHHHHHHHhhhccc---CCeeeCCCCHHH
Confidence 775 78999999999999999965 35899999999999999999999 6 899999999999
Q ss_pred EEecCCCcEEEecccccccCCCCCce---eecccccccCcccccccCCC------CCCCccchHhHHHHHHHHHcC----
Q 002346 718 ILIGDDMRAKVADFGLVKNAPDGKYS---VETRLAGTFGYLAPEYAATG------RVTTKIDVYAFGVVLMETITG---- 784 (933)
Q Consensus 718 ill~~~~~~kl~DfGla~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~SlG~~l~elltG---- 784 (933)
|+++.++.+||+|||+++........ ......||+.|+|||++.+. .++.++||||||+++|||+||
T Consensus 178 Ill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~ 257 (342)
T 1b6c_B 178 ILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIG 257 (342)
T ss_dssp EEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBT
T ss_pred EEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcC
Confidence 99999999999999999765443322 12345799999999998765 334789999999999999999
Q ss_pred ------CCCCCCCCCchhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002346 785 ------RKALDDTMPDDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNV 858 (933)
Q Consensus 785 ------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~ 858 (933)
+.||....+... ....+..... .. ...+.+.......+....+.+++.+||+.||++||++.++++.
T Consensus 258 ~~~~~~~~p~~~~~~~~~-~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~ 330 (342)
T 1b6c_B 258 GIHEDYQLPYYDLVPSDP-SVEEMRKVVC--EQ----KLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKT 330 (342)
T ss_dssp TBCCCCCCTTTTTSCSSC-CHHHHHHHHT--TS----CCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHH
T ss_pred CcccccccCccccCcCcc-cHHHHHHHHH--HH----HhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHH
Confidence 778876433221 1111122111 11 1122222111233556678899999999999999999999999
Q ss_pred Hhhhhhhc
Q 002346 859 LGPLVEQW 866 (933)
Q Consensus 859 L~~~~~~~ 866 (933)
|+.+.++.
T Consensus 331 L~~i~~~~ 338 (342)
T 1b6c_B 331 LSQLSQQE 338 (342)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99887654
No 124
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=8.5e-39 Score=351.67 Aligned_cols=264 Identities=22% Similarity=0.328 Sum_probs=210.4
Q ss_pred HHHHhcCCccC-CccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCc
Q 002346 576 LRQVTDNFSEA-NILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGS 652 (933)
Q Consensus 576 l~~~~~~~~~~-~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 652 (933)
.+.+.++|.+. +.||+|+||.||+|.. .+++.||+|++...........++.+|+.++..+ +||||+++++++....
T Consensus 23 ~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~ 102 (327)
T 3lm5_A 23 MENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTS 102 (327)
T ss_dssp HHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS
T ss_pred HHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCC
Confidence 45667788887 8999999999999965 4699999999987765566678899999999999 5799999999999999
Q ss_pred eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecC---CCcEEEe
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGD---DMRAKVA 729 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~---~~~~kl~ 729 (933)
..++||||+++|+|.+++.. .....+++.+++.++.|++.||+|||+ ++|+||||||+||+++. ++.+||+
T Consensus 103 ~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~i~~ql~~~L~~LH~---~givH~Dikp~NIl~~~~~~~~~~kL~ 176 (327)
T 3lm5_A 103 EIILILEYAAGGEIFSLCLP---ELAEMVSENDVIRLIKQILEGVYYLHQ---NNIVHLDLKPQNILLSSIYPLGDIKIV 176 (327)
T ss_dssp EEEEEEECCTTEEGGGGGSS---CC-CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESCBTTBCCEEEC
T ss_pred eEEEEEEecCCCcHHHHHHH---hcccCCCHHHHHHHHHHHHHHHHHHHH---CCeecCcCChHHEEEecCCCCCcEEEe
Confidence 99999999999999999854 223569999999999999999999999 89999999999999998 7899999
Q ss_pred cccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhc
Q 002346 730 DFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLIS 809 (933)
Q Consensus 730 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~ 809 (933)
|||+++...... ......||+.|+|||++.+..++.++||||||+++|||++|+.||........ .. .....
T Consensus 177 Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~---~~---~i~~~ 248 (327)
T 3lm5_A 177 DFGMSRKIGHAC--ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQET---YL---NISQV 248 (327)
T ss_dssp CGGGCEEC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH---HH---HHHHT
T ss_pred eCccccccCCcc--ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHH---HH---HHHhc
Confidence 999998765432 12345799999999999999999999999999999999999999976533221 11 11111
Q ss_pred cCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 810 KENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 810 ~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
....+....+.. ...+.+++.+||+.||++||+++++++ ++|..
T Consensus 249 ~~~~~~~~~~~~---------~~~~~~li~~~L~~dP~~Rpt~~~ll~------h~~~~ 292 (327)
T 3lm5_A 249 NVDYSEETFSSV---------SQLATDFIQSLLVKNPEKRPTAEICLS------HSWLQ 292 (327)
T ss_dssp CCCCCTTTTTTS---------CHHHHHHHHHHSCSSGGGSCCHHHHTT------CGGGC
T ss_pred ccccCchhhccc---------CHHHHHHHHHHcCCChhhCcCHHHHhC------CHhhc
Confidence 111111111111 235779999999999999999999976 56654
No 125
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=1.3e-38 Score=367.29 Aligned_cols=195 Identities=28% Similarity=0.392 Sum_probs=157.0
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeC-----ce
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCING-----SE 653 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 653 (933)
.++|++.+.||+|+||.||+|.. .+++.||||++..........+++.+|+.++++++|||||++++++... ..
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 47899999999999999999954 5789999999977655556678899999999999999999999998543 56
Q ss_pred eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccc
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGL 733 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGl 733 (933)
.|+||||+ +++|.+++.. ...+++..++.++.||++||+|||+ .+||||||||+|||++.++.+||+|||+
T Consensus 132 ~~lv~e~~-~~~L~~~~~~-----~~~l~~~~~~~~~~qi~~aL~~LH~---~~iiHrDlKp~NILl~~~~~~kl~DFGl 202 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFRT-----PVYLTELHIKTLLYNLLVGVKYVHS---AGILHRDLKPANCLVNQDCSVKVCDFGL 202 (458)
T ss_dssp EEEEECCC-SEEHHHHHHS-----SCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTCCEEECCCTT
T ss_pred EEEEEecc-ccchhhhccc-----CCCCCHHHHHHHHHHHHHHHHHHHh---CCcCCCCCChhhEEECCCCCEeeccccc
Confidence 89999998 5799998854 2569999999999999999999999 8999999999999999999999999999
Q ss_pred cccCCCCCc--------------------------eeecccccccCccccccc-CCCCCCCccchHhHHHHHHHHHc
Q 002346 734 VKNAPDGKY--------------------------SVETRLAGTFGYLAPEYA-ATGRVTTKIDVYAFGVVLMETIT 783 (933)
Q Consensus 734 a~~~~~~~~--------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~SlG~~l~ellt 783 (933)
++....... ...+..+||+.|+|||++ ....++.++|||||||++|||++
T Consensus 203 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~ellt 279 (458)
T 3rp9_A 203 ARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLN 279 (458)
T ss_dssp CBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred chhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence 986542211 122446789999999976 55679999999999999999999
No 126
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=1.2e-38 Score=343.39 Aligned_cols=254 Identities=24% Similarity=0.357 Sum_probs=200.8
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
.++|.+.+.||+|+||.||++.. .+++.||+|++.... .....+.+.+|++++++++||||+++++++.+....++||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 99 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDR-SQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVM 99 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGG-CCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccc-cchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEE
Confidence 46899999999999999999965 568999999987664 3344678999999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEe---cCCCcEEEecccccc
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILI---GDDMRAKVADFGLVK 735 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill---~~~~~~kl~DfGla~ 735 (933)
||+++|+|.+++...... ...+++..++.++.|+++||+|||+ ++|+||||||+||++ +.++.+||+|||++.
T Consensus 100 e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~ 175 (285)
T 3is5_A 100 ETCEGGELLERIVSAQAR-GKALSEGYVAELMKQMMNALAYFHS---QHVVHKDLKPENILFQDTSPHSPIKIIDFGLAE 175 (285)
T ss_dssp CCCSCCBHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEESSSSTTCCEEECCCCCCC
T ss_pred EeCCCCcHHHHHHhhhhc-ccCCCHHHHHHHHHHHHHHHHHHHh---CCEEECCCCHHHEEEecCCCCCCEEEEeeecce
Confidence 999999999998653222 2569999999999999999999999 899999999999999 456789999999997
Q ss_pred cCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCc
Q 002346 736 NAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPK 815 (933)
Q Consensus 736 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (933)
...... ......||+.|+|||++. +.++.++||||||+++|||++|+.||........ . ............
T Consensus 176 ~~~~~~--~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~---~---~~~~~~~~~~~~ 246 (285)
T 3is5_A 176 LFKSDE--HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEV---Q---QKATYKEPNYAV 246 (285)
T ss_dssp C------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH---H---HHHHHCCCCCCC
T ss_pred ecCCcc--cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHH---H---hhhccCCccccc
Confidence 654432 223457999999999886 5789999999999999999999999976533221 1 111111111111
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 816 AIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 816 ~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
.. .. ....+.+++.+|++.||++||++.|+++
T Consensus 247 ~~-~~---------~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 247 EC-RP---------LTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp ---CC---------CCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred cc-Cc---------CCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 00 00 1135779999999999999999999986
No 127
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-39 Score=350.90 Aligned_cols=274 Identities=23% Similarity=0.320 Sum_probs=203.3
Q ss_pred HHhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC---chhHHHHHHHHHHHHhcC---CCcceeEEeEeee
Q 002346 578 QVTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG---NKGLSEFQAEIAVLTKVR---HRHLVALLGYCIN 650 (933)
Q Consensus 578 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~---~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~ 650 (933)
.+.++|++.+.||+|+||.||+|.. .+++.||||++...... ......+.+|+.+++.++ ||||+++++++..
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~ 85 (308)
T 3g33_A 6 MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCAT 85 (308)
T ss_dssp ----CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEE
T ss_pred ccccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeec
Confidence 3467999999999999999999965 57899999998754321 122346677877777764 9999999999987
Q ss_pred Cc-----eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCc
Q 002346 651 GS-----ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMR 725 (933)
Q Consensus 651 ~~-----~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~ 725 (933)
.. ..++||||+. ++|.+++... ....+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.
T Consensus 86 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~~~~~ 158 (308)
T 3g33_A 86 SRTDREIKVTLVFEHVD-QDLRTYLDKA---PPPGLPAETIKDLMRQFLRGLDFLHA---NCIVHRDLKPENILVTSGGT 158 (308)
T ss_dssp CCSSSEEEEEEEEECCC-CBHHHHHHTC---CTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCTTTEEECTTSC
T ss_pred cCCCCceeEEEEehhhh-cCHHHHHhhc---cCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCC
Confidence 54 5789999996 6999999652 22449999999999999999999999 89999999999999999999
Q ss_pred EEEecccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHH
Q 002346 726 AKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRR 805 (933)
Q Consensus 726 ~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~ 805 (933)
+||+|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+. +......
T Consensus 159 ~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~--~~~i~~~ 234 (308)
T 3g33_A 159 VKLADFGLARIYSYQM--ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQ--LGKIFDL 234 (308)
T ss_dssp EEECSCSCTTTSTTCC--CSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHH--HHHHHHH
T ss_pred EEEeeCccccccCCCc--ccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHHH
Confidence 9999999998654332 23456899999999999989999999999999999999999999976543222 1111111
Q ss_pred Hhh-ccCCCCccc-------CCCCCCC--hhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 806 VLI-SKENIPKAI-------DPNLNLD--EETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 806 ~~~-~~~~~~~~~-------d~~l~~~--~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
... ....++... .+..... ....+....+.+++.+||+.||++|||+.|+++ ++|..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~------h~~~~ 301 (308)
T 3g33_A 235 IGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ------HSYLH 301 (308)
T ss_dssp HCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT------STTC-
T ss_pred hCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc------Ccccc
Confidence 100 011111100 0000000 000112246789999999999999999999986 66664
No 128
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=5.9e-39 Score=357.27 Aligned_cols=252 Identities=23% Similarity=0.308 Sum_probs=194.2
Q ss_pred hcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
.++|++.+.||+|+||.||++... +++.||||++..... ..+.+.+|+.+++.++||||+++++++..+...++||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 95 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA---IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIM 95 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT---SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc---ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEE
Confidence 468999999999999999999654 789999999976532 2357889999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCc--EEEeccccccc
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMR--AKVADFGLVKN 736 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~--~kl~DfGla~~ 736 (933)
||+++|+|.+++.. ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++. +||+|||+++.
T Consensus 96 e~~~~~~L~~~l~~-----~~~~~~~~~~~i~~ql~~~L~~LH~---~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~ 167 (361)
T 3uc3_A 96 EYASGGELYERICN-----AGRFSEDEARFFFQQLLSGVSYCHS---MQICHRDLKLENTLLDGSPAPRLKICDFGYSKS 167 (361)
T ss_dssp ECCCSCBHHHHHHH-----HSSCCHHHHHHHHHHHHHHHHHHHH---TTCCSCCCCGGGEEECSSSSCCEEECCCCCC--
T ss_pred EeCCCCCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCceEEEeecCcccc
Confidence 99999999999965 2458999999999999999999999 89999999999999987765 99999999874
Q ss_pred CCCCCceeecccccccCcccccccCCCCCCCc-cchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCc
Q 002346 737 APDGKYSVETRLAGTFGYLAPEYAATGRVTTK-IDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPK 815 (933)
Q Consensus 737 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (933)
..... ......||+.|+|||++.+..++.+ +|||||||++|||++|+.||........ ...............+.
T Consensus 168 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~--~~~~~~~~~~~~~~~~~ 243 (361)
T 3uc3_A 168 SVLHS--QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRD--YRKTIQRILSVKYSIPD 243 (361)
T ss_dssp ---------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCC--HHHHHHHHHTTCCCCCT
T ss_pred ccccC--CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHH--HHHHHHHHhcCCCCCCC
Confidence 33222 2234579999999999988777655 8999999999999999999986543221 12222222222222211
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 816 AIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 816 ~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
. ..+ ...+.+++.+||+.||++||++.|+++
T Consensus 244 ~--~~~---------s~~~~~li~~~L~~dP~~Rps~~ell~ 274 (361)
T 3uc3_A 244 D--IRI---------SPECCHLISRIFVADPATRISIPEIKT 274 (361)
T ss_dssp T--SCC---------CHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred c--CCC---------CHHHHHHHHHHccCChhHCcCHHHHHh
Confidence 1 011 135779999999999999999999986
No 129
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=355.97 Aligned_cols=246 Identities=24% Similarity=0.344 Sum_probs=196.7
Q ss_pred CCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEeecCCC
Q 002346 586 ANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYEYMPRG 664 (933)
Q Consensus 586 ~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g 664 (933)
.+.||+|+||.||+|.. .+|+.||+|++.... ....+++.+|++++++++||||+++++++.+.+..++||||++++
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~ 171 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRG--MKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG 171 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccc--cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence 57899999999999964 579999999997652 345678999999999999999999999999999999999999999
Q ss_pred ChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEe--cCCCcEEEecccccccCCCCCc
Q 002346 665 TLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILI--GDDMRAKVADFGLVKNAPDGKY 742 (933)
Q Consensus 665 sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill--~~~~~~kl~DfGla~~~~~~~~ 742 (933)
+|.+++... ...+++.+++.++.|+++||+|||+ .+|+||||||+|||+ +.++.+||+|||+++.......
T Consensus 172 ~L~~~l~~~----~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~ 244 (373)
T 2x4f_A 172 ELFDRIIDE----SYNLTELDTILFMKQICEGIRHMHQ---MYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK 244 (373)
T ss_dssp EEHHHHHHT----GGGCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB
T ss_pred cHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc
Confidence 999998652 2458999999999999999999999 899999999999999 6778999999999987654332
Q ss_pred eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccCCCCC
Q 002346 743 SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAIDPNLN 822 (933)
Q Consensus 743 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 822 (933)
.....||+.|+|||++.+..++.++|||||||++|||++|+.||......+. ...+.......+....+.
T Consensus 245 --~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~------~~~i~~~~~~~~~~~~~~-- 314 (373)
T 2x4f_A 245 --LKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAET------LNNILACRWDLEDEEFQD-- 314 (373)
T ss_dssp --CCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHH------HHHHHHTCCCSCSGGGTT--
T ss_pred --cccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHH------HHHHHhccCCCChhhhcc--
Confidence 2335799999999999988999999999999999999999999976532211 112222111111111111
Q ss_pred CChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 823 LDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 823 ~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
...++.+++.+||+.||++||++.|+++
T Consensus 315 -------~~~~~~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 315 -------ISEEAKEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp -------SCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred -------CCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 1246789999999999999999999987
No 130
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=1.3e-38 Score=344.37 Aligned_cols=260 Identities=23% Similarity=0.344 Sum_probs=207.3
Q ss_pred hcCCccCC-ccccCCCeEEEEEEe---CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeE
Q 002346 580 TDNFSEAN-ILGRGGFGVVYGGEL---PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERL 655 (933)
Q Consensus 580 ~~~~~~~~-~lg~G~~g~Vy~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 655 (933)
.++|.+.+ .||+|+||.||+|.. .+++.||||++..........+++.+|+.+++.++||||+++++++ ..+..+
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~ 93 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM 93 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence 46788887 999999999999943 3468899999987654555578899999999999999999999999 567789
Q ss_pred EEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 656 LVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 656 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
+||||+++++|.+++.. ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||++.
T Consensus 94 lv~e~~~~~~L~~~l~~-----~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~ 165 (291)
T 1xbb_A 94 LVMEMAELGPLNKYLQQ-----NRHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSK 165 (291)
T ss_dssp EEEECCTTEEHHHHHHH-----CTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred EEEEeCCCCCHHHHHHh-----CcCCCHHHHHHHHHHHHHHHHHHHh---CCeEcCCCCcceEEEeCCCcEEEccCCcce
Confidence 99999999999999966 2458999999999999999999999 899999999999999999999999999998
Q ss_pred cCCCCCcee--ecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCC
Q 002346 736 NAPDGKYSV--ETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKEN 812 (933)
Q Consensus 736 ~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (933)
......... .....|++.|+|||.+.+..++.++||||||+++|||++ |+.||....... ....+ . ...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~---~~~~~---~--~~~ 237 (291)
T 1xbb_A 166 ALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE---VTAML---E--KGE 237 (291)
T ss_dssp ECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH---HHHHH---H--TTC
T ss_pred eeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHH---HHHHH---H--cCC
Confidence 765443322 223456789999999988889999999999999999999 999998654322 11111 1 111
Q ss_pred CCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhc
Q 002346 813 IPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQW 866 (933)
Q Consensus 813 ~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~ 866 (933)
.+ ...... ...+.+++.+||+.||++||++.++++.|+.+....
T Consensus 238 ~~-~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~ 281 (291)
T 1xbb_A 238 RM-GCPAGC---------PREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV 281 (291)
T ss_dssp CC-CCCTTC---------CHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred CC-CCCCCC---------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence 11 111111 245789999999999999999999999999886543
No 131
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.9e-38 Score=342.25 Aligned_cols=261 Identities=23% Similarity=0.363 Sum_probs=211.5
Q ss_pred cCCccCC-ccccCCCeEEEEEEeC---CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEE
Q 002346 581 DNFSEAN-ILGRGGFGVVYGGELP---DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLL 656 (933)
Q Consensus 581 ~~~~~~~-~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 656 (933)
++|.+.+ .||+|+||.||+|... ++..||||+++... .....+++.+|++++++++||||+++++++ ..+..++
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~l 86 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT-EKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALML 86 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCcc-chhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEE
Confidence 5666766 9999999999999643 57889999998653 345567899999999999999999999999 5567899
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKN 736 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~ 736 (933)
||||+++++|.+++.. ....+++.+++.++.|+++||+|||+ .+|+||||||+||+++.++.+||+|||+++.
T Consensus 87 v~e~~~~~~L~~~l~~----~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~ 159 (287)
T 1u59_A 87 VMEMAGGGPLHKFLVG----KREEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGLSKA 159 (287)
T ss_dssp EEECCTTEEHHHHHTT----CTTTSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred EEEeCCCCCHHHHHHh----CCccCCHHHHHHHHHHHHHHHHHHHH---CCEeeCCCchheEEEcCCCCEEECcccceee
Confidence 9999999999999954 12568999999999999999999999 8999999999999999999999999999987
Q ss_pred CCCCCcee--ecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCC
Q 002346 737 APDGKYSV--ETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENI 813 (933)
Q Consensus 737 ~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (933)
........ .....||+.|+|||++.+..++.++||||||+++|||++ |+.||......+. ...+ .. ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~---~~~i---~~--~~~ 231 (287)
T 1u59_A 160 LGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEV---MAFI---EQ--GKR 231 (287)
T ss_dssp CTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHH---HHHH---HT--TCC
T ss_pred eccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHH---HHHH---hc--CCc
Confidence 65433222 223457899999999988889999999999999999999 9999976543221 1111 11 111
Q ss_pred CcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 814 PKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 814 ~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
..+++.. ...+.+++.+|++.+|++||++.++++.|+.+......
T Consensus 232 -~~~~~~~---------~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~ 276 (287)
T 1u59_A 232 -MECPPEC---------PPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS 276 (287)
T ss_dssp -CCCCTTC---------CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHT
T ss_pred -CCCCCCc---------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCC
Confidence 1111111 24677999999999999999999999999998776554
No 132
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=1.7e-38 Score=347.81 Aligned_cols=264 Identities=22% Similarity=0.331 Sum_probs=201.8
Q ss_pred hcCCccC-CccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCceeEE
Q 002346 580 TDNFSEA-NILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGSERLL 656 (933)
Q Consensus 580 ~~~~~~~-~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 656 (933)
.+.|++. +.||+|+||.||+|.. .+++.||||++.... ....+.+.+|++++.++ +||||+++++++.+++..++
T Consensus 11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~l 88 (316)
T 2ac3_A 11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQP--GHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYL 88 (316)
T ss_dssp TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCS--SCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCc--chhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEE
Confidence 4678875 7899999999999964 579999999997652 34467899999999985 79999999999999999999
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCc---EEEecccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMR---AKVADFGL 733 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~---~kl~DfGl 733 (933)
||||+++++|.+++... ..+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++. +||+|||+
T Consensus 89 v~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~ 160 (316)
T 2ac3_A 89 VFEKMRGGSILSHIHKR-----RHFNELEASVVVQDVASALDFLHN---KGIAHRDLKPENILCEHPNQVSPVKICDFDL 160 (316)
T ss_dssp EEECCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESCSSSSCSEEECCTTC
T ss_pred EEEcCCCCcHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEEccCCCcCceEEEEccC
Confidence 99999999999999762 468999999999999999999999 89999999999999998776 99999999
Q ss_pred cccCCCCCc------eeecccccccCcccccccCC-----CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchh------
Q 002346 734 VKNAPDGKY------SVETRLAGTFGYLAPEYAAT-----GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDR------ 796 (933)
Q Consensus 734 a~~~~~~~~------~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~------ 796 (933)
+........ .......||+.|+|||++.. ..++.++|||||||++|||++|+.||......+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~ 240 (316)
T 2ac3_A 161 GSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGE 240 (316)
T ss_dssp CC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----
T ss_pred ccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccc
Confidence 875432211 11123469999999999865 5688999999999999999999999986543210
Q ss_pred ---hHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 797 ---AHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 797 ---~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
.................+..... .....+.+++.+||+.||++||+++|+++ ++|..
T Consensus 241 ~~~~~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~li~~~L~~dP~~Rps~~e~l~------hp~~~ 300 (316)
T 2ac3_A 241 ACPACQNMLFESIQEGKYEFPDKDWA---------HISCAAKDLISKLLVRDAKQRLSAAQVLQ------HPWVQ 300 (316)
T ss_dssp CCHHHHHHHHHHHHHCCCCCCHHHHT---------TSCHHHHHHHHHHSCSSTTTSCCHHHHHH------STTCC
T ss_pred cchhHHHHHHHHHhccCcccCchhcc---------cCCHHHHHHHHHHhhCChhhCCCHHHHhc------Chhhc
Confidence 00011111222111111110000 11245789999999999999999999987 66664
No 133
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=6.6e-39 Score=344.81 Aligned_cols=258 Identities=24% Similarity=0.381 Sum_probs=205.5
Q ss_pred hcCCccCCccccCCCeEEEEEEeCC----CcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPD----GTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERL 655 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 655 (933)
.++|.+.+.||+|+||.||+|...+ +..||+|++.... .....+++.+|+.++++++||||+++++++.+ +..+
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~ 88 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC-TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTW 88 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS-CHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc-CchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCE
Confidence 4689999999999999999996532 3469999987653 34456789999999999999999999999865 4568
Q ss_pred EEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 656 LVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 656 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
+||||+++++|.+++... ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||++.
T Consensus 89 ~v~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~ 161 (281)
T 3cc6_A 89 IIMELYPYGELGHYLERN----KNSLKVLTLVLYSLQICKAMAYLES---INCVHRDIAVRNILVASPECVKLGDFGLSR 161 (281)
T ss_dssp EEEECCTTCBHHHHHHHH----TTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEEEETTEEEECCCCGGG
T ss_pred EEEecCCCCCHHHHHHhc----cccCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCccceEEECCCCcEEeCccCCCc
Confidence 999999999999999652 2458999999999999999999999 899999999999999999999999999998
Q ss_pred cCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCCC
Q 002346 736 NAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENIP 814 (933)
Q Consensus 736 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (933)
..............+++.|+|||++.+..++.++||||||+++|||++ |+.||......+.. ..+.. ....+
T Consensus 162 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~---~~~~~----~~~~~ 234 (281)
T 3cc6_A 162 YIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVI---GVLEK----GDRLP 234 (281)
T ss_dssp CC---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHH---HHHHH----TCCCC
T ss_pred ccccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHH---HHHhc----CCCCC
Confidence 765544333344567889999999988899999999999999999998 99999765433221 11111 11111
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhh
Q 002346 815 KAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVE 864 (933)
Q Consensus 815 ~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~ 864 (933)
..... ...+.+++.+|++.+|++||++.|+++.|+.+.+
T Consensus 235 --~~~~~---------~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~ 273 (281)
T 3cc6_A 235 --KPDLC---------PPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQ 273 (281)
T ss_dssp --CCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred --CCCCC---------CHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHH
Confidence 01111 1357799999999999999999999999988754
No 134
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=1.5e-38 Score=357.71 Aligned_cols=252 Identities=21% Similarity=0.330 Sum_probs=200.7
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC--CCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR--HRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~lv 657 (933)
.++|++.+.||+|+||.||+|...+++.||||++..........+.+.+|+.++.+++ ||||+++++++..++..++|
T Consensus 55 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 134 (390)
T 2zmd_A 55 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 134 (390)
T ss_dssp TEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEE
Confidence 3569999999999999999998878999999999876555666788999999999996 59999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|| +.+++|.+++.. ...+++.+++.++.||++||+|||+ ++|+||||||+|||++ ++.+||+|||+++..
T Consensus 135 ~E-~~~~~L~~~l~~-----~~~~~~~~~~~i~~qi~~aL~~lH~---~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~ 204 (390)
T 2zmd_A 135 ME-CGNIDLNSWLKK-----KKSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIV-DGMLKLIDFGIANQM 204 (390)
T ss_dssp EE-CCSEEHHHHHHH-----CSSCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCCGGGEEES-SSCEEECCCSSSCCC
T ss_pred Ee-cCCCCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHEEEE-CCeEEEEecCccccc
Confidence 99 568899999976 2468899999999999999999998 8999999999999995 588999999999866
Q ss_pred CCCCce-eecccccccCcccccccCC-----------CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHH
Q 002346 738 PDGKYS-VETRLAGTFGYLAPEYAAT-----------GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRR 805 (933)
Q Consensus 738 ~~~~~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~ 805 (933)
...... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||....... ..+..
T Consensus 205 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~-----~~~~~ 279 (390)
T 2zmd_A 205 QPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI-----SKLHA 279 (390)
T ss_dssp ---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH-----HHHHH
T ss_pred cCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHH-----HHHHH
Confidence 543322 2345679999999999864 468899999999999999999999997643221 11122
Q ss_pred HhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 806 VLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 806 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
....... ..++... ...+.+++.+||+.||++||++.|+++
T Consensus 280 ~~~~~~~--~~~~~~~---------~~~~~~li~~~L~~dP~~Rps~~ell~ 320 (390)
T 2zmd_A 280 IIDPNHE--IEFPDIP---------EKDLQDVLKCCLKRDPKQRISIPELLA 320 (390)
T ss_dssp HHCTTSC--CCCCCCS---------CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HhCcccc--CCCCccc---------hHHHHHHHHHHcccChhhCCCHHHHhh
Confidence 2211111 1111111 135779999999999999999999986
No 135
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=9.9e-39 Score=352.26 Aligned_cols=252 Identities=23% Similarity=0.357 Sum_probs=201.7
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCceeEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGSERLL 656 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 656 (933)
+.++|++.+.||+|+||.||++.. .+|+.||||++..... .+.+|++++.++ +||||+++++++.++...++
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~l 93 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR------DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYV 93 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC------CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC------ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEE
Confidence 467899999999999999999965 4689999999976532 245788888888 79999999999999999999
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCC----CcEEEeccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDD----MRAKVADFG 732 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~----~~~kl~DfG 732 (933)
||||+++|+|.+++.. ...+++.++..++.||+.||+|||+ ++|+||||||+||++.++ +.+||+|||
T Consensus 94 v~E~~~gg~L~~~i~~-----~~~~~~~~~~~~~~qi~~al~~lH~---~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg 165 (342)
T 2qr7_A 94 VTELMKGGELLDKILR-----QKFFSEREASAVLFTITKTVEYLHA---QGVVHRDLKPSNILYVDESGNPESIRICDFG 165 (342)
T ss_dssp EECCCCSCBHHHHHHT-----CTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSCSGGGEEECCCT
T ss_pred EEeCCCCCcHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCcEeccCCHHHEEEecCCCCcCeEEEEECC
Confidence 9999999999999965 2468999999999999999999999 899999999999998543 359999999
Q ss_pred ccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCC
Q 002346 733 LVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKEN 812 (933)
Q Consensus 733 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (933)
+++....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||..........+.. ........
T Consensus 166 ~a~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~---~i~~~~~~ 241 (342)
T 2qr7_A 166 FAKQLRAENG-LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILA---RIGSGKFS 241 (342)
T ss_dssp TCEECBCTTC-CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHH---HHHHCCCC
T ss_pred CcccCcCCCC-ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHH---HHccCCcc
Confidence 9986554322 2234579999999999988889999999999999999999999998643333222222 22222222
Q ss_pred CCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 813 IPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 813 ~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
.+....+.+ ...+.+++.+||+.||++||++.++++
T Consensus 242 ~~~~~~~~~---------s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 242 LSGGYWNSV---------SDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp CCSTTTTTS---------CHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred cCccccccC---------CHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 211111111 235779999999999999999999876
No 136
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.8e-39 Score=352.22 Aligned_cols=251 Identities=23% Similarity=0.352 Sum_probs=207.0
Q ss_pred HHhcCCccCCccccCCCeEEEEEE-eCCCcEEEEEEeccccCCc------hhHHHHHHHHHHHHhcCCCcceeEEeEeee
Q 002346 578 QVTDNFSEANILGRGGFGVVYGGE-LPDGTKIAVKRMESNTMGN------KGLSEFQAEIAVLTKVRHRHLVALLGYCIN 650 (933)
Q Consensus 578 ~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 650 (933)
...++|++.+.||+|+||.||+|. ..+++.||||++....... ...+.+.+|+.++++++||||+++++++.+
T Consensus 21 ~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~ 100 (335)
T 3dls_A 21 EYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFEN 100 (335)
T ss_dssp HHHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred ccccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEee
Confidence 456789999999999999999995 4678999999998754221 134467889999999999999999999999
Q ss_pred CceeEEEEeecCCC-ChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEe
Q 002346 651 GSERLLVYEYMPRG-TLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVA 729 (933)
Q Consensus 651 ~~~~~lv~e~~~~g-sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~ 729 (933)
.+..++||||+.+| +|.+++.. ...+++..++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+
T Consensus 101 ~~~~~lv~e~~~~g~~l~~~~~~-----~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~ 172 (335)
T 3dls_A 101 QGFFQLVMEKHGSGLDLFAFIDR-----HPRLDEPLASYIFRQLVSAVGYLRL---KDIIHRDIKDENIVIAEDFTIKLI 172 (335)
T ss_dssp SSEEEEEEECCTTSCBHHHHHHT-----CCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEEC
T ss_pred CCEEEEEEEeCCCCccHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHh---CCeEEeccCHHHEEEcCCCcEEEe
Confidence 99999999999777 99999965 2469999999999999999999999 899999999999999999999999
Q ss_pred cccccccCCCCCceeecccccccCcccccccCCCCC-CCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhh
Q 002346 730 DFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRV-TTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLI 808 (933)
Q Consensus 730 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~ 808 (933)
|||+++....... .....||+.|+|||++.+..+ +.++||||||+++|||++|+.||...... ..
T Consensus 173 Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~------------~~ 238 (335)
T 3dls_A 173 DFGSAAYLERGKL--FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET------------VE 238 (335)
T ss_dssp CCTTCEECCTTCC--BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG------------TT
T ss_pred ecccceECCCCCc--eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH------------Hh
Confidence 9999987655432 234579999999999988776 78999999999999999999999652110 00
Q ss_pred ccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCCC
Q 002346 809 SKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKPA 869 (933)
Q Consensus 809 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~~ 869 (933)
.....+.. . ...+.+++.+||+.||++||+++++++ ++|...
T Consensus 239 ~~~~~~~~----~---------~~~l~~li~~~L~~dP~~Rps~~ell~------hp~~~~ 280 (335)
T 3dls_A 239 AAIHPPYL----V---------SKELMSLVSGLLQPVPERRTTLEKLVT------DPWVTQ 280 (335)
T ss_dssp TCCCCSSC----C---------CHHHHHHHHHHTCSSGGGSCCHHHHHH------CTTTTC
T ss_pred hccCCCcc----c---------CHHHHHHHHHHccCChhhCcCHHHHhc------CccccC
Confidence 01111111 1 135779999999999999999999987 666643
No 137
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=6.6e-39 Score=343.62 Aligned_cols=247 Identities=26% Similarity=0.412 Sum_probs=182.2
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC-chhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG-NKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
++|++.+.||+|+||.||+|.. .+++.||+|++...... ....+.+.+|+.+++.++||||+++++++.+++..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 5799999999999999999964 57899999999765432 234568999999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+ +++|.+++.. ...+++.+++.++.|+++||+|||+ .+|+||||||+||++++++.+||+|||++....
T Consensus 93 e~~-~~~l~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~ 163 (275)
T 2eue_A 93 EYA-GNELFDYIVQ-----RDKMSEQEARRFFQQIISAVEYCHR---HKIVHRDLKPENLLLDEHLNVKIADFGLSNIMT 163 (275)
T ss_dssp ECC-CEEHHHHHHT-----SSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTSCEEECCSSCC----
T ss_pred hhc-CCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCCeeccCChHhEEECCCCCEEEeecccceecc
Confidence 999 7788888855 2468999999999999999999999 899999999999999999999999999997655
Q ss_pred CCCceeecccccccCcccccccCCCCC-CCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAATGRV-TTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
.... .....||+.|+|||.+.+..+ +.++||||||+++|||++|+.||....... . ...........+..+
T Consensus 164 ~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~---~~~~~~~~~~~~~~~ 235 (275)
T 2eue_A 164 DGNF--LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPV---L---FKNISNGVYTLPKFL 235 (275)
T ss_dssp -------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSHHH---H---HHHHHHTCCCCCTTS
T ss_pred Cccc--ccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHH---H---HHHHHhCCCCCCccC
Confidence 4322 234579999999999987765 789999999999999999999997643221 1 112222222222211
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
...+.+++.+|++.||++||+++|+++
T Consensus 236 -------------~~~~~~li~~~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 236 -------------SPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp -------------CHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred -------------CHHHHHHHHHHhhcCHhHCCCHHHHhh
Confidence 135779999999999999999999976
No 138
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=2e-38 Score=340.30 Aligned_cols=251 Identities=22% Similarity=0.312 Sum_probs=205.0
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
+.++|++.+.||+|+||.||+|.. .++..||+|++.... ....+.+.+|++++++++||||+++++++.++...++|
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (277)
T 3f3z_A 7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYF--VEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLV 84 (277)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGG--CSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhc--cchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEE
Confidence 457899999999999999999965 457899999987653 33467899999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEe---cCCCcEEEeccccc
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILI---GDDMRAKVADFGLV 734 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill---~~~~~~kl~DfGla 734 (933)
|||+++++|.+++.. ...+++.+++.++.|++.||+|||+ ++|+||||||+||++ +.++.+||+|||++
T Consensus 85 ~e~~~~~~L~~~~~~-----~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~ 156 (277)
T 3f3z_A 85 MELCTGGELFERVVH-----KRVFRESDAARIMKDVLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLA 156 (277)
T ss_dssp EECCCSCBHHHHHHH-----HCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEECCCTTC
T ss_pred EeccCCCcHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEecCCCCCcEEEEecccc
Confidence 999999999999865 2458999999999999999999999 899999999999999 78899999999999
Q ss_pred ccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCC
Q 002346 735 KNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIP 814 (933)
Q Consensus 735 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (933)
........ .....||+.|+|||++.+ .++.++||||||+++|||++|+.||........ ...........+
T Consensus 157 ~~~~~~~~--~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~------~~~~~~~~~~~~ 227 (277)
T 3f3z_A 157 ARFKPGKM--MRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEV------MLKIREGTFTFP 227 (277)
T ss_dssp EECCTTSC--BCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHCCCCCC
T ss_pred eeccCccc--hhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCCCHHHH------HHHHHhCCCCCC
Confidence 86654332 234579999999999865 489999999999999999999999976532211 111122111111
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 815 KAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 815 ~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
..... .....+.+++.+|++.||++||++.++++
T Consensus 228 ~~~~~---------~~~~~~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 228 EKDWL---------NVSPQAESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp HHHHT---------TSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred chhhh---------cCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 11000 11246789999999999999999999976
No 139
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.7e-38 Score=354.39 Aligned_cols=259 Identities=23% Similarity=0.359 Sum_probs=197.7
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeC------c
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCING------S 652 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~ 652 (933)
.++|++.+.||+|+||.||+|.. .+|+.||||++..........+++.+|+.+++.++||||+++++++... .
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 47899999999999999999965 5799999999976654555567899999999999999999999999765 3
Q ss_pred eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccc
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFG 732 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfG 732 (933)
..++||||+ +++|.+++.. ..+++..+..++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~------~~l~~~~~~~~~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg 173 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKH------EKLGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFG 173 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred eEEEEEecC-CCCHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCcCHHHEEEcCCCCEEEEeee
Confidence 469999999 8899999865 458999999999999999999999 899999999999999999999999999
Q ss_pred ccccCCCCCceeecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhcc-
Q 002346 733 LVKNAPDGKYSVETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISK- 810 (933)
Q Consensus 733 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~- 810 (933)
+++..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+.. ..+.......
T Consensus 174 ~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l---~~i~~~~g~~~ 246 (367)
T 1cm8_A 174 LARQADSE----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQL---KEIMKVTGTPP 246 (367)
T ss_dssp TCEECCSS----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHH---HHHHHHHCCCC
T ss_pred cccccccc----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHH---HHHHHhcCCCC
Confidence 99875432 234578999999999876 67999999999999999999999999865432211 1111100000
Q ss_pred ----------------CCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 811 ----------------ENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 811 ----------------~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
..++..-...+ ..........+.+++.+|++.||++|||++|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~ 307 (367)
T 1cm8_A 247 AEFVQRLQSDEAKNYMKGLPELEKKDF--ASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA 307 (367)
T ss_dssp HHHHHTCSCHHHHHHHHHSCCCCCCCG--GGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHhCCCCCCCCH--HHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence 00000000000 0000111245779999999999999999999987
No 140
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=7.2e-39 Score=366.97 Aligned_cols=248 Identities=28% Similarity=0.440 Sum_probs=206.0
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC-chhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG-NKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
++|.+.+.||+|+||.||+|.. .+|+.||||++...... ......+.+|+.+++.++||||+++++++...+..++||
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~ 95 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM 95 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 5799999999999999999965 47999999999765321 234568999999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+++|+|.+++.. ...+++.+++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||+++...
T Consensus 96 E~~~gg~L~~~l~~-----~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~ 167 (476)
T 2y94_A 96 EYVSGGELFDYICK-----NGRLDEKESRRLFQQILSGVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS 167 (476)
T ss_dssp ECCSSEEHHHHTTS-----SSSCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSGGGEEECTTCCEEECCCSSCEECC
T ss_pred eCCCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCCCcccccHHHEEEecCCCeEEEeccchhhcc
Confidence 99999999999954 2569999999999999999999998 899999999999999999999999999998765
Q ss_pred CCCceeecccccccCcccccccCCCCC-CCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAATGRV-TTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
.... .....||+.|+|||++.+..+ +.++||||+||++|||++|+.||....... ....+.......+..
T Consensus 168 ~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~------~~~~i~~~~~~~p~~- 238 (476)
T 2y94_A 168 DGEF--LRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPT------LFKKICDGIFYTPQY- 238 (476)
T ss_dssp TTCC--BCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHH------HHHHHHTTCCCCCTT-
T ss_pred cccc--ccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHH------HHHHHhcCCcCCCcc-
Confidence 5332 234579999999999988765 689999999999999999999998654321 122222211111111
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
+ ...+.+++.+||+.||++||++.|+++
T Consensus 239 ---~---------s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 239 ---L---------NPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp ---C---------CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ---C---------CHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 1 135779999999999999999999987
No 141
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=1.3e-38 Score=352.40 Aligned_cols=248 Identities=25% Similarity=0.396 Sum_probs=202.0
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC-CchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
.+.|+..+.||+|+||.||+|.. .+++.||||++..... .....+++.+|++++++++||||+++++++..+...++|
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 132 (348)
T 1u5q_A 53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV 132 (348)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence 35689999999999999999964 6799999999976532 233457899999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+. |+|.+++... ..++++.++..++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||+++..
T Consensus 133 ~e~~~-g~l~~~l~~~----~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~ 204 (348)
T 1u5q_A 133 MEYCL-GSASDLLEVH----KKPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIM 204 (348)
T ss_dssp EECCS-EEHHHHHHHH----TSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTEEEECCCTTCBSS
T ss_pred EecCC-CCHHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEeeccCceec
Confidence 99996 6888888542 2568999999999999999999999 89999999999999999999999999999865
Q ss_pred CCCCceeecccccccCcccccccC---CCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCC
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAA---TGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIP 814 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (933)
... ....||+.|+|||++. .+.++.++|||||||++|||++|+.||........ ....... ..+
T Consensus 205 ~~~-----~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~------~~~~~~~--~~~ 271 (348)
T 1u5q_A 205 APA-----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA------LYHIAQN--ESP 271 (348)
T ss_dssp SSB-----CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHHHHHS--CCC
T ss_pred CCC-----CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH------HHHHHhc--CCC
Confidence 432 2357999999999884 56789999999999999999999999976532211 1111111 111
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 815 KAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 815 ~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
....... ...+.+++.+||+.+|++||+++++++
T Consensus 272 ~~~~~~~---------~~~l~~li~~~l~~dP~~Rps~~~ll~ 305 (348)
T 1u5q_A 272 ALQSGHW---------SEYFRNFVDSCLQKIPQDRPTSEVLLK 305 (348)
T ss_dssp CCCCTTS---------CHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCCCCCC---------CHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 1111111 135779999999999999999999986
No 142
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=5.5e-39 Score=372.29 Aligned_cols=255 Identities=27% Similarity=0.432 Sum_probs=208.4
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC-CchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
.++|++.+.||+|+||.||+|.. .+|+.||+|++.+... .......+.+|+.+++.++|||||++++++.+.+..++|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 46799999999999999999965 4799999999976532 223456789999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+++|+|.+++... +...+++..++.++.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+++..
T Consensus 263 mEy~~gg~L~~~l~~~---~~~~l~e~~~~~i~~qIl~aL~yLH~---~gIvHrDLKPeNILld~~g~vKL~DFGla~~~ 336 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHM---GQAGFPEARAVFYAAEICCGLEDLHR---ERIVYRDLKPENILLDDHGHIRISDLGLAVHV 336 (576)
T ss_dssp ECCCCSCBHHHHHHSS---SSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEcCCCCcHHHHHHhc---CCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCchheEEEeCCCCeEEEecccceec
Confidence 9999999999999652 22458999999999999999999999 89999999999999999999999999999876
Q ss_pred CCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.......... ............++.
T Consensus 337 ~~~~~--~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~--~i~~~i~~~~~~~p~-- 410 (576)
T 2acx_A 337 PEGQT--IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKRE--EVERLVKEVPEEYSE-- 410 (576)
T ss_dssp CTTCC--EECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHH--HHHHHHHHCCCCCCT--
T ss_pred ccCcc--ccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHH--HHHHHhhcccccCCc--
Confidence 55432 234589999999999999899999999999999999999999998754322111 111222221222221
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCC-----CHHHHHH
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRP-----DMGHAVN 857 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RP-----s~~evl~ 857 (933)
.+. ..+.+++.+||+.||++|| +++|+++
T Consensus 411 --~~s---------~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 411 --RFS---------PQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp --TSC---------HHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred --cCC---------HHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 111 3577999999999999999 6778765
No 143
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=3.6e-39 Score=359.19 Aligned_cols=250 Identities=25% Similarity=0.358 Sum_probs=195.2
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC-chhHHHHHHHHHH-HHhcCCCcceeEEeEeeeCceeEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG-NKGLSEFQAEIAV-LTKVRHRHLVALLGYCINGSERLL 656 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~l 656 (933)
.++|++.+.||+|+||.||+|+. .+++.||+|++.+.... ......+.+|..+ ++.++||||+++++++.+.+..|+
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 36799999999999999999965 46889999999876432 2334566777776 567899999999999999999999
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKN 736 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~ 736 (933)
||||+++|+|.+++.. ...+++..++.++.||+.||+|||+ ++|+||||||+|||++.++++||+|||+++.
T Consensus 117 v~E~~~gg~L~~~l~~-----~~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~ikL~DFG~a~~ 188 (373)
T 2r5t_A 117 VLDYINGGELFYHLQR-----ERCFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPENILLDSQGHIVLTDFGLCKE 188 (373)
T ss_dssp EEECCCSCBHHHHHHH-----HSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCCBCGG
T ss_pred EEeCCCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEECCCCCEEEeeCccccc
Confidence 9999999999999965 2458899999999999999999999 8999999999999999999999999999985
Q ss_pred CCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcc
Q 002346 737 APDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKA 816 (933)
Q Consensus 737 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (933)
..... ......+||+.|+|||++.+..++.++|||||||++|||++|+.||......+ ....+......++
T Consensus 189 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~------~~~~i~~~~~~~~-- 259 (373)
T 2r5t_A 189 NIEHN-STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE------MYDNILNKPLQLK-- 259 (373)
T ss_dssp GBCCC-CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHH------HHHHHHHSCCCCC--
T ss_pred cccCC-CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHH------HHHHHHhcccCCC--
Confidence 43222 12345689999999999999999999999999999999999999997643221 1222222222221
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 817 IDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 817 ~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
+.+. ..+.+++.+||+.||++||++.+.++
T Consensus 260 --~~~~---------~~~~~li~~lL~~dp~~R~~~~~~~~ 289 (373)
T 2r5t_A 260 --PNIT---------NSARHLLEGLLQKDRTKRLGAKDDFM 289 (373)
T ss_dssp --SSSC---------HHHHHHHHHHTCSSGGGSTTTTTTHH
T ss_pred --CCCC---------HHHHHHHHHHcccCHHhCCCCCCCHH
Confidence 1221 35779999999999999999864433
No 144
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=2.9e-38 Score=342.62 Aligned_cols=268 Identities=20% Similarity=0.294 Sum_probs=206.8
Q ss_pred HHhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEe-eeCceeE
Q 002346 578 QVTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYC-INGSERL 655 (933)
Q Consensus 578 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~ 655 (933)
.+.++|++.+.||+|+||.||+|.. .+++.||||++...... +++.+|+.+++.++|++++..++++ ..+...+
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~ 81 (296)
T 4hgt_A 6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH----PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNV 81 (296)
T ss_dssp -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---C----CCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEE
T ss_pred ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccc----hHHHHHHHHHHHhcCCCCCCeeeeecCCCCceE
Confidence 4568899999999999999999964 67899999987654322 3588999999999988877776665 5677889
Q ss_pred EEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEe---cCCCcEEEeccc
Q 002346 656 LVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILI---GDDMRAKVADFG 732 (933)
Q Consensus 656 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill---~~~~~~kl~DfG 732 (933)
+||||+ +++|.+++... ...+++.+++.++.|++.||+|||+ ++|+||||||+||++ +.++.+||+|||
T Consensus 82 lv~e~~-~~~L~~~~~~~----~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg 153 (296)
T 4hgt_A 82 MVMELL-GPSLEDLFNFC----SRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFG 153 (296)
T ss_dssp EEEECC-CCBHHHHHHHT----TSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECCGGGTTCEEECCCT
T ss_pred EEEEcc-CCCHHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeeeeccCCCCeEEEecCc
Confidence 999999 99999999642 2469999999999999999999999 899999999999999 788999999999
Q ss_pred ccccCCCCCc------eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHH
Q 002346 733 LVKNAPDGKY------SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRV 806 (933)
Q Consensus 733 la~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~ 806 (933)
+++....... .......||+.|+|||.+.+..++.++|||||||++|||++|+.||..................
T Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 233 (296)
T 4hgt_A 154 LAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEK 233 (296)
T ss_dssp TCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHH
T ss_pred cceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcc
Confidence 9986554332 1223467999999999999999999999999999999999999999875443222222111111
Q ss_pred hhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 807 LISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 807 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
.... . ...+...+ ...+.+++.+|++.+|++||+++++++.|+++.+....
T Consensus 234 ~~~~-~-~~~~~~~~---------~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~~ 284 (296)
T 4hgt_A 234 KMST-P-IEVLCKGY---------PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGF 284 (296)
T ss_dssp HHHS-C-HHHHTTTS---------CHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHTC
T ss_pred cccc-h-hhhhhccC---------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 1100 0 00000111 24678999999999999999999999999998876553
No 145
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.8e-40 Score=361.31 Aligned_cols=263 Identities=24% Similarity=0.377 Sum_probs=191.2
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHh--cCCCcceeEEeEeeeCc----e
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTK--VRHRHLVALLGYCINGS----E 653 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~----~ 653 (933)
.++|++.+.||+|+||.||+|.. +++.||||++... ....+.+|.+++.. ++||||+++++++.... .
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~-----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 75 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR-----EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ 75 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-C-TTSCEEEEECC-T-----THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEE
T ss_pred cceeeehhhccCCCCeEEEEEEE-cCcceEEEEeccc-----chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccce
Confidence 47899999999999999999987 5899999998643 34567888888887 78999999999998766 7
Q ss_pred eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhh--------hccCCCeEecCCCCCcEEecCCCc
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLH--------SLAQQSFIHRDLKPSNILIGDDMR 725 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~Dik~~Nill~~~~~ 725 (933)
.++||||+++|+|.+++.. ..+++.+++.++.|++.||+||| + ++|+||||||+||+++.++.
T Consensus 76 ~~lv~e~~~~g~L~~~l~~------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~---~~ivH~Dlkp~Nil~~~~~~ 146 (303)
T 3gxj_A 76 LWLVSDYHEHGSLFDYLNR------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGK---PAIAHRDLKSKNILVKKNGT 146 (303)
T ss_dssp EEEEEECCTTCCHHHHHHH------CCBCC-CHHHHC-CHHHHHC-CCCCBCSTTCB---C-CCCSCCCGGGC-CCTTCC
T ss_pred eEEEEeccCCCCHHHHHhc------cCcchHHHHHHHHHHHHHHHHHHHHHhhhccC---CCEeeCcCCHHHeEECCCCC
Confidence 8999999999999999965 35788899999999999999999 6 89999999999999999999
Q ss_pred EEEecccccccCCCCCcee---ecccccccCcccccccCCC------CCCCccchHhHHHHHHHHHcC----------CC
Q 002346 726 AKVADFGLVKNAPDGKYSV---ETRLAGTFGYLAPEYAATG------RVTTKIDVYAFGVVLMETITG----------RK 786 (933)
Q Consensus 726 ~kl~DfGla~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~SlG~~l~elltG----------~~ 786 (933)
+||+|||+++......... .....||+.|+|||++.+. .++.++|||||||++|||++| +.
T Consensus 147 ~kl~DFg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~ 226 (303)
T 3gxj_A 147 CCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQL 226 (303)
T ss_dssp C-BCCCCC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCC
T ss_pred EEEeecCcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeec
Confidence 9999999997554433221 2334799999999998766 445689999999999999999 66
Q ss_pred CCCCCCCchhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhh
Q 002346 787 ALDDTMPDDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVE 864 (933)
Q Consensus 787 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~ 864 (933)
||....+..... .... .... . ....+.........+....+.+++.+||+.||++||+++++++.|+.+.+
T Consensus 227 p~~~~~~~~~~~-~~~~-~~~~-~----~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~ 297 (303)
T 3gxj_A 227 PYYDLVPSDPSV-EEMR-KVVC-E----QKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp TTTTTCC-CCCC-C-CH-HHHT-T----SCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CC
T ss_pred cccccCCCCccH-HHHH-HHHH-H----hhcCCCccccccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhh
Confidence 765432211100 0000 0110 1 11112222112223555678899999999999999999999999988754
No 146
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=8.8e-39 Score=370.10 Aligned_cols=253 Identities=26% Similarity=0.422 Sum_probs=206.5
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC-chhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG-NKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
.++|.+.+.||+|+||.||+|.. .+|+.||+|++.+.... ....+.+.+|+.++++++||||+++++++......++|
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 263 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV 263 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence 36899999999999999999966 46999999999765322 23457889999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+++|+|.+++.... .....+++..++.++.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+++..
T Consensus 264 mE~~~gg~L~~~l~~~~-~~~~~l~e~~~~~~~~qi~~aL~~LH~---~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~ 339 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYNVD-EDNPGFQEPRAIFYTAQIVSGLEHLHQ---RNIIYRDLKPENVLLDDDGNVRISDLGLAVEL 339 (543)
T ss_dssp ECCCTTCBHHHHHHTSS-TTSCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEeccCCCHHHHHHHhh-cccccccHHHHHHHHHHHHHHHHHHHH---cCCcccCCChHHEEEeCCCCEEEeecceeeec
Confidence 99999999999986632 223569999999999999999999999 89999999999999999999999999999876
Q ss_pred CCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||........ ...............+.
T Consensus 340 ~~~~~-~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~--~~~~~~~i~~~~~~~p~-- 414 (543)
T 3c4z_A 340 KAGQT-KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVE--NKELKQRVLEQAVTYPD-- 414 (543)
T ss_dssp CTTCC-CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCC--HHHHHHHHHHCCCCCCT--
T ss_pred cCCCc-ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchh--HHHHHHHHhhcccCCCc--
Confidence 54432 22345899999999999999999999999999999999999999986533211 11222233322222221
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCH
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDM 852 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~ 852 (933)
.+ ...+.+++.+||+.||++||++
T Consensus 415 --~~---------s~~~~~li~~lL~~dP~~R~~~ 438 (543)
T 3c4z_A 415 --KF---------SPASKDFCEALLQKDPEKRLGF 438 (543)
T ss_dssp --TS---------CHHHHHHHHHHSCSSGGGSCCC
T ss_pred --cc---------CHHHHHHHHHhccCCHhHCCCC
Confidence 11 1357799999999999999976
No 147
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=5e-39 Score=352.13 Aligned_cols=276 Identities=25% Similarity=0.378 Sum_probs=218.5
Q ss_pred ecHHHHHHHhcCCccCCccccCCCeEEEEEEe------CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCccee
Q 002346 571 ISIEVLRQVTDNFSEANILGRGGFGVVYGGEL------PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVA 643 (933)
Q Consensus 571 ~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~ 643 (933)
+.........++|++.+.||+|+||.||+|.. .+++.||||++.... .....+.+.+|+.++.++ +||||++
T Consensus 17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~hp~iv~ 95 (316)
T 2xir_A 17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA-THSEHRALMSELKILIHIGHHLNVVN 95 (316)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCC-CcHHHHHHHHHHHHHHhcccCCCeee
Confidence 34445555678999999999999999999963 356899999997653 344567899999999999 7999999
Q ss_pred EEeEeeeCc-eeEEEEeecCCCChhhHhhhcccCC-----------CCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEec
Q 002346 644 LLGYCINGS-ERLLVYEYMPRGTLAQHLFEWHDHG-----------YTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHR 711 (933)
Q Consensus 644 l~~~~~~~~-~~~lv~e~~~~gsL~~~l~~~~~~~-----------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~ 711 (933)
+++++...+ ..++||||+++++|.+++....... ...+++.+++.++.|+++||+|||+ ++|+||
T Consensus 96 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~ 172 (316)
T 2xir_A 96 LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHR 172 (316)
T ss_dssp EEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHH---TTCCCS
T ss_pred EEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHh---CCcccc
Confidence 999987754 5899999999999999997632210 1238999999999999999999999 899999
Q ss_pred CCCCCcEEecCCCcEEEecccccccCCCCC-ceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCC
Q 002346 712 DLKPSNILIGDDMRAKVADFGLVKNAPDGK-YSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALD 789 (933)
Q Consensus 712 Dik~~Nill~~~~~~kl~DfGla~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~ 789 (933)
||||+||+++.++.+||+|||+++...... ........||+.|+|||++.+..++.++||||||+++|||+| |+.||.
T Consensus 173 dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~ 252 (316)
T 2xir_A 173 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 252 (316)
T ss_dssp CCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred cCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCc
Confidence 999999999999999999999998654433 233345678999999999998899999999999999999998 999997
Q ss_pred CCCCchhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcC
Q 002346 790 DTMPDDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWK 867 (933)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~ 867 (933)
....... ....+ .. .... ...... ...+.+++.+||+.+|++||++.|+++.|+.+++...
T Consensus 253 ~~~~~~~--~~~~~---~~-~~~~--~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~ 313 (316)
T 2xir_A 253 GVKIDEE--FCRRL---KE-GTRM--RAPDYT---------TPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 313 (316)
T ss_dssp TCCCSHH--HHHHH---HH-TCCC--CCCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred ccchhHH--HHHHh---cc-CccC--CCCCCC---------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence 6543221 11111 11 1110 011111 1357799999999999999999999999999876543
No 148
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=3.9e-38 Score=340.43 Aligned_cols=249 Identities=25% Similarity=0.392 Sum_probs=202.9
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeee----CceeE
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCIN----GSERL 655 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~ 655 (933)
..|.+.+.||+|+||.||+|.. .++..||+|++..........+.+.+|+.++++++||||+++++++.. +...+
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 105 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence 3477888999999999999955 568899999998776666677889999999999999999999998865 45679
Q ss_pred EEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCC--eEecCCCCCcEEec-CCCcEEEeccc
Q 002346 656 LVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQS--FIHRDLKPSNILIG-DDMRAKVADFG 732 (933)
Q Consensus 656 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dik~~Nill~-~~~~~kl~DfG 732 (933)
+||||+++++|.+++... ..+++..++.++.|+++||+|||+ .+ |+||||||+||+++ .++.+||+|||
T Consensus 106 lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH~---~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg 177 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKRF-----KVMKIKVLRSWCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDLG 177 (290)
T ss_dssp EEEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHT---SSSCCCCSCCCGGGEEESSTTSCEEECCTT
T ss_pred EEEEecCCCCHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHHc---CCCCEEECCCCHHHEEEECCCCCEEEeeCC
Confidence 999999999999999652 468999999999999999999998 67 99999999999998 78999999999
Q ss_pred ccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCC
Q 002346 733 LVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKEN 812 (933)
Q Consensus 733 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (933)
++....... .....||+.|+|||++. +.++.++||||||+++|||++|+.||........ . ..... ...
T Consensus 178 ~~~~~~~~~---~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~--~---~~~~~--~~~ 246 (290)
T 1t4h_A 178 LATLKRASF---AKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQ--I---YRRVT--SGV 246 (290)
T ss_dssp GGGGCCTTS---BEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHH--H---HHHHT--TTC
T ss_pred Ccccccccc---cccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHH--H---HHHHh--ccC
Confidence 997654432 23457999999999886 5689999999999999999999999976433221 1 11111 111
Q ss_pred CCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 813 IPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 813 ~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
.+..++... ...+.+++.+||+.||++||+++|+++
T Consensus 247 ~~~~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 247 KPASFDKVA---------IPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp CCGGGGGCC---------CHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CccccCCCC---------CHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 111222111 135789999999999999999999986
No 149
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=1e-38 Score=350.60 Aligned_cols=269 Identities=26% Similarity=0.433 Sum_probs=215.1
Q ss_pred HHHhcCCccCCccccCCCeEEEEEEeC------CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeee
Q 002346 577 RQVTDNFSEANILGRGGFGVVYGGELP------DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCIN 650 (933)
Q Consensus 577 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 650 (933)
+...++|++.+.||+|+||.||+|... +++.||||++.... ......++.+|+.++++++||||+++++++.+
T Consensus 21 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~ 99 (322)
T 1p4o_A 21 EVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA-SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ 99 (322)
T ss_dssp BCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS-CHHHHHHHHHHHHHGGGCCCTTBCCEEEEECS
T ss_pred cchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccccc-CHHHHHHHHHHHHHHHhcCCCCEeeeEEEEcc
Confidence 345678999999999999999999653 37889999997553 34456679999999999999999999999999
Q ss_pred CceeEEEEeecCCCChhhHhhhccc-----CCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCc
Q 002346 651 GSERLLVYEYMPRGTLAQHLFEWHD-----HGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMR 725 (933)
Q Consensus 651 ~~~~~lv~e~~~~gsL~~~l~~~~~-----~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~ 725 (933)
+...++||||+++|+|.+++..... ....++++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.
T Consensus 100 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~NIli~~~~~ 176 (322)
T 1p4o_A 100 GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFT 176 (322)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCSGGGEEECTTCC
T ss_pred CCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCCccCCCccceEEEcCCCe
Confidence 9999999999999999999975321 112457999999999999999999999 89999999999999999999
Q ss_pred EEEecccccccCCCCCce-eecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHH
Q 002346 726 AKVADFGLVKNAPDGKYS-VETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWF 803 (933)
Q Consensus 726 ~kl~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~ 803 (933)
+||+|||+++........ ......||+.|+|||++.+..++.++||||||+++|||++ |+.||....... ..
T Consensus 177 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~---~~--- 250 (322)
T 1p4o_A 177 VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ---VL--- 250 (322)
T ss_dssp EEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHH---HH---
T ss_pred EEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHH---HH---
Confidence 999999998755433221 2233467889999999998899999999999999999999 888987643221 11
Q ss_pred HHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcC
Q 002346 804 RRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWK 867 (933)
Q Consensus 804 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~ 867 (933)
..... ..... .... ....+.+++.+|++.+|++||++.|+++.|+++++.+.
T Consensus 251 ~~~~~--~~~~~-~~~~---------~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~~~ 302 (322)
T 1p4o_A 251 RFVME--GGLLD-KPDN---------CPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGF 302 (322)
T ss_dssp HHHHT--TCCCC-CCTT---------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTTH
T ss_pred HHHHc--CCcCC-CCCC---------CCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhccCC
Confidence 11111 11111 1111 12357799999999999999999999999998876544
No 150
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=5.8e-39 Score=344.90 Aligned_cols=255 Identities=19% Similarity=0.305 Sum_probs=205.4
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeee--CceeEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCIN--GSERLL 656 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~l 656 (933)
.++|++.+.||+|+||.||+|.. .+++.||+|++..........+.+.+|+.++++++||||+++++++.. +...++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 46899999999999999999965 478999999998776566667889999999999999999999998854 567899
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCC-----eEecCCCCCcEEecCCCcEEEecc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQS-----FIHRDLKPSNILIGDDMRAKVADF 731 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~-----ivH~Dik~~Nill~~~~~~kl~Df 731 (933)
||||+++++|.+++..... ....+++.+++.++.|+++||+|||+ .+ |+||||||+||+++.++.+||+||
T Consensus 85 v~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~~~~~ivH~dl~p~NIl~~~~~~~kl~df 160 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTK-ERQYLDEEFVLRVMTQLTLALKECHR---RSDGGHTVLHRDLKPANVFLDGKQNVKLGDF 160 (279)
T ss_dssp EEECCTTEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHHH---HC------CCCCCSGGGEEECSSSCEEECCC
T ss_pred EEeCCCCCCHHHHHHhhcc-cCCCCCHHHHHHHHHHHHHHHHHHhc---ccCCCCeeEEeccchhhEEEcCCCCEEEecC
Confidence 9999999999999976332 23458999999999999999999998 66 999999999999999999999999
Q ss_pred cccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccC
Q 002346 732 GLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKE 811 (933)
Q Consensus 732 Gla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~ 811 (933)
|+++....... ......|++.|+|||.+.+..++.++||||||+++|||++|+.||...... .... .... .
T Consensus 161 g~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---~~~~---~i~~--~ 231 (279)
T 2w5a_A 161 GLARILNHDTS-FAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK---ELAG---KIRE--G 231 (279)
T ss_dssp CHHHHC---CH-HHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHH---HHHH--T
T ss_pred chheeeccccc-cccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHH---HHHH---HHhh--c
Confidence 99986654322 123357899999999999889999999999999999999999999865322 1111 1111 1
Q ss_pred CCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 812 NIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 812 ~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
..+ .+.... ...+.+++.+||+.+|++||++.|+++
T Consensus 232 ~~~-~~~~~~---------~~~l~~li~~~l~~~p~~Rps~~~ll~ 267 (279)
T 2w5a_A 232 KFR-RIPYRY---------SDELNEIITRMLNLKDYHRPSVEEILE 267 (279)
T ss_dssp CCC-CCCTTS---------CHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ccc-cCCccc---------CHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence 111 111111 245779999999999999999999987
No 151
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=9.3e-39 Score=343.27 Aligned_cols=248 Identities=26% Similarity=0.480 Sum_probs=202.2
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC-chhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG-NKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
.++|++.+.||+|+||.||+|.. .+++.||||++...... ......+.+|+.++++++||||+++++++.+....++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 46899999999999999999954 56789999998654322 22356789999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+++++|.+++... ..+++..++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||++...
T Consensus 88 ~e~~~~~~l~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~LH~---~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~ 159 (279)
T 3fdn_A 88 LEYAPLGTVYRELQKL-----SKFDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHA 159 (279)
T ss_dssp ECCCTTEEHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHT---TTCEECCCCGGGEEECTTSCEEECSCCEESCC
T ss_pred EecCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHh---CCEecccCChHhEEEcCCCCEEEEeccccccC
Confidence 9999999999999662 458999999999999999999998 89999999999999999999999999998654
Q ss_pred CCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
.... .....|++.|+|||.+.+..++.++||||||+++|||++|+.||........ . ..........+..+
T Consensus 160 ~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~---~---~~~~~~~~~~~~~~ 230 (279)
T 3fdn_A 160 PSSR---RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET---Y---KRISRVEFTFPDFV 230 (279)
T ss_dssp -----------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHH---H---HHHHHTCCCCCTTS
T ss_pred Cccc---ccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHH---H---HHHHhCCCCCCCcC
Confidence 4322 2345799999999999998999999999999999999999999976432221 1 11111111222111
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
...+.+++.+|++.+|++||++.|+++
T Consensus 231 -------------~~~~~~li~~~l~~~p~~Rps~~e~l~ 257 (279)
T 3fdn_A 231 -------------TEGARDLISRLLKHNPSQRPMLREVLE 257 (279)
T ss_dssp -------------CHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred -------------CHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 135679999999999999999999997
No 152
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=3e-38 Score=342.43 Aligned_cols=267 Identities=20% Similarity=0.293 Sum_probs=210.2
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEe-eeCceeEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYC-INGSERLL 656 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~l 656 (933)
+.++|++.+.||+|+||.||+|.. .+++.||||++..... .+++.+|+.+++.++|++++..++++ ..+...++
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~l 82 (296)
T 3uzp_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK----HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM 82 (296)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS----CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEE
T ss_pred eccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc----hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEE
Confidence 357899999999999999999964 6899999999875532 24689999999999988877666655 56677899
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEe---cCCCcEEEecccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILI---GDDMRAKVADFGL 733 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill---~~~~~~kl~DfGl 733 (933)
||||+ +++|.+++... ...+++.+++.++.|+++||+|||+ ++|+||||||+||++ +.++.+||+|||+
T Consensus 83 v~e~~-~~~L~~~~~~~----~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~ 154 (296)
T 3uzp_A 83 VMELL-GPSLEDLFNFC----SRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGL 154 (296)
T ss_dssp EEECC-CCBHHHHHHHT----TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECCGGGTTCEEECCCTT
T ss_pred EEEec-CCCHHHHHHhh----ccCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHeEEecCCCCCeEEEeeCCC
Confidence 99999 99999999642 2469999999999999999999999 899999999999999 4888999999999
Q ss_pred cccCCCCCce------eecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHh
Q 002346 734 VKNAPDGKYS------VETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVL 807 (933)
Q Consensus 734 a~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~ 807 (933)
++........ ......||+.|+|||++.+..++.++||||||+++|||++|+.||..............+....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 234 (296)
T 3uzp_A 155 AKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKK 234 (296)
T ss_dssp CEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccc
Confidence 9865543321 1234679999999999999999999999999999999999999998654322222221111111
Q ss_pred hccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 808 ISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 808 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
... . ...+.+.. ...+.+++.+||+.||++||+++++++.|+.+......
T Consensus 235 ~~~-~-~~~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~ 284 (296)
T 3uzp_A 235 MST-P-IEVLCKGY---------PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGF 284 (296)
T ss_dssp HHS-C-HHHHTTTS---------CHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred cCC-c-hHHHHhhC---------CHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcCC
Confidence 100 0 00011111 14578999999999999999999999999998776654
No 153
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=2e-38 Score=354.60 Aligned_cols=256 Identities=16% Similarity=0.200 Sum_probs=207.5
Q ss_pred hcCCccCCccccCCCeEEEEE------EeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC---CCcceeEEeEeee
Q 002346 580 TDNFSEANILGRGGFGVVYGG------ELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR---HRHLVALLGYCIN 650 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~------~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~ 650 (933)
.++|.+.+.||+|+||.||+| ...+++.||||++... ...++.+|+++++.++ |+||+++++++..
T Consensus 64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-----~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~ 138 (365)
T 3e7e_A 64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA-----NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLF 138 (365)
T ss_dssp SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC-----CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC
T ss_pred CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC-----ChhHHHHHHHHHHHhhhhhhhhhhhhheeeec
Confidence 478999999999999999999 3557899999998754 2457888888888886 9999999999999
Q ss_pred CceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecC--------
Q 002346 651 GSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGD-------- 722 (933)
Q Consensus 651 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~-------- 722 (933)
++..++||||+++|+|.+++..........+++.+++.|+.|+++||+|||+ ++||||||||+|||++.
T Consensus 139 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~---~~ivHrDiKp~NIll~~~~~~~~~~ 215 (365)
T 3e7e_A 139 QNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHD---CEIIHGDIKPDNFILGNGFLEQDDE 215 (365)
T ss_dssp SSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECGGGTCC---
T ss_pred CCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhh---CCeecCCCCHHHEEecccccCcccc
Confidence 9999999999999999999976544445679999999999999999999999 89999999999999998
Q ss_pred ---CCcEEEecccccccCC-CCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhH
Q 002346 723 ---DMRAKVADFGLVKNAP-DGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAH 798 (933)
Q Consensus 723 ---~~~~kl~DfGla~~~~-~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~ 798 (933)
++.+||+|||+++... ...........||+.|+|||++.+..++.++|||||||++|||+||+.||........
T Consensus 216 ~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~-- 293 (365)
T 3e7e_A 216 DDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGEC-- 293 (365)
T ss_dssp ---CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEE--
T ss_pred ccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCce--
Confidence 8999999999997543 1222334556899999999999999999999999999999999999999964322110
Q ss_pred HHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCC-CCHHHHHHHHhhhhhhc
Q 002346 799 LVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQR-PDMGHAVNVLGPLVEQW 866 (933)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~R-Ps~~evl~~L~~~~~~~ 866 (933)
.+...+. ... ....+.+++..|++.+|.+| |+++++.+.|++..++.
T Consensus 294 -------------~~~~~~~-~~~-------~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~~ 341 (365)
T 3e7e_A 294 -------------KPEGLFR-RLP-------HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQH 341 (365)
T ss_dssp -------------EECSCCT-TCS-------SHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHHH
T ss_pred -------------eechhcc-ccC-------cHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHh
Confidence 0011111 111 12345689999999999998 57888888888876653
No 154
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=5.4e-39 Score=353.55 Aligned_cols=272 Identities=19% Similarity=0.283 Sum_probs=198.1
Q ss_pred HhcCCccCCccccCCCeEEEEEE-eCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGE-LPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
..++|++.+.||+|+||.||+|. ..+++.||||++..........+.+.+|+.++++++||||+++++++.++...++|
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 111 (329)
T 3gbz_A 32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLI 111 (329)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEE
Confidence 35789999999999999999995 45789999999987654455566788999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEe-----cCCCcEEEeccc
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILI-----GDDMRAKVADFG 732 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill-----~~~~~~kl~DfG 732 (933)
|||++ |+|.+++.. ...+++.+++.++.|+++||+|||+ ++|+||||||+||++ +.++.+||+|||
T Consensus 112 ~e~~~-~~L~~~~~~-----~~~~~~~~~~~i~~ql~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg 182 (329)
T 3gbz_A 112 FEYAE-NDLKKYMDK-----NPDVSMRVIKSFLYQLINGVNFCHS---RRCLHRDLKPQNLLLSVSDASETPVLKIGDFG 182 (329)
T ss_dssp EECCS-EEHHHHHHH-----CTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEC-----CCEEEECCTT
T ss_pred EecCC-CCHHHHHhh-----cCCCCHHHHHHHHHHHHHHHHHHHh---CCEECCCCCHHHEEEecCCCCccceEEECcCC
Confidence 99997 599999965 2458999999999999999999999 899999999999999 455569999999
Q ss_pred ccccCCCCCceeecccccccCcccccccCCC-CCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhcc-
Q 002346 733 LVKNAPDGKYSVETRLAGTFGYLAPEYAATG-RVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISK- 810 (933)
Q Consensus 733 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~- 810 (933)
+++....... ......||+.|+|||++.+. .++.++|||||||++|||++|+.||......+ .+...........
T Consensus 183 ~a~~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~--~~~~~~~~~~~~~~ 259 (329)
T 3gbz_A 183 LARAFGIPIR-QFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEID--QLFKIFEVLGLPDD 259 (329)
T ss_dssp HHHHHC------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHHHCCCCT
T ss_pred CccccCCccc-ccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHH--HHHHHHHHhCCCch
Confidence 9986543321 22345789999999998764 48999999999999999999999997654322 1222111111000
Q ss_pred CCCCccc--------CCCCCCChh----hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 811 ENIPKAI--------DPNLNLDEE----TIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 811 ~~~~~~~--------d~~l~~~~~----~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
...+... .+....... ......++.+++.+||+.||++||+++|+++ ++|..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~------hp~f~ 323 (329)
T 3gbz_A 260 TTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE------HPYFS 323 (329)
T ss_dssp TTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT------SGGGS
T ss_pred hhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC------CcccC
Confidence 0000000 000000000 0002246789999999999999999999986 66664
No 155
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=3.1e-38 Score=360.43 Aligned_cols=200 Identities=27% Similarity=0.379 Sum_probs=169.5
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeC-----ce
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCING-----SE 653 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 653 (933)
.++|++.+.||+|+||.||+|.. .+++.||||++..........+++.+|+.++++++||||+++++++... ..
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 47899999999999999999954 5688999999987654555678899999999999999999999999766 57
Q ss_pred eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccc
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGL 733 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGl 733 (933)
.|+||||++ ++|.+++.. ...+++..++.++.||++||+|||+ .+|+||||||+|||++.++.+||+|||+
T Consensus 105 ~~lv~e~~~-~~L~~~~~~-----~~~l~~~~~~~i~~qil~aL~~LH~---~givHrDlkp~NILl~~~~~~kL~DFGl 175 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKT-----PIFLTEEHIKTILYNLLLGENFIHE---SGIIHRDLKPANCLLNQDCSVKVCDFGL 175 (432)
T ss_dssp EEEEEECCS-EEHHHHHHS-----SCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred EEEEEecCC-cCHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHeEECCCCCEEEccCCC
Confidence 899999995 699999864 2569999999999999999999999 8999999999999999999999999999
Q ss_pred cccCCCCCce---------------------eecccccccCccccccc-CCCCCCCccchHhHHHHHHHHHcCCCCC
Q 002346 734 VKNAPDGKYS---------------------VETRLAGTFGYLAPEYA-ATGRVTTKIDVYAFGVVLMETITGRKAL 788 (933)
Q Consensus 734 a~~~~~~~~~---------------------~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~SlG~~l~elltG~~p~ 788 (933)
++........ ..+..+||+.|+|||++ ....++.++||||+||++|||++|..||
T Consensus 176 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~ 252 (432)
T 3n9x_A 176 ARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH 252 (432)
T ss_dssp CEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence 9866443211 12456899999999986 5667999999999999999999865444
No 156
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=6.4e-39 Score=355.49 Aligned_cols=267 Identities=16% Similarity=0.226 Sum_probs=199.9
Q ss_pred hcCCccCCccccCCCeEEEEEEeC----CCcEEEEEEeccccCCc---------hhHHHHHHHHHHHHhcCCCcceeEEe
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP----DGTKIAVKRMESNTMGN---------KGLSEFQAEIAVLTKVRHRHLVALLG 646 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~---------~~~~~~~~E~~~l~~l~h~niv~l~~ 646 (933)
.++|++.+.||+|+||.||+|... ++..||||++....... .....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 467999999999999999999764 57889999987653211 01234678889999999999999999
Q ss_pred Eeee----CceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecC
Q 002346 647 YCIN----GSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGD 722 (933)
Q Consensus 647 ~~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~ 722 (933)
++.. ....++||||+ +++|.+++... ..+++.+++.++.|++.||+|||+ ++|+||||||+||+++.
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~ 186 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQN-----GTFKKSTVLQLGIRMLDVLEYIHE---NEYVHGDIKAANLLLGY 186 (345)
T ss_dssp EEEEESSSCEEEEEEEECE-EEEHHHHCBGG-----GBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEES
T ss_pred ccccccCCCcEEEEEEecc-CCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCcCHHHEEEcc
Confidence 9987 67889999999 99999999652 369999999999999999999999 89999999999999998
Q ss_pred CC--cEEEecccccccCCCCCc------eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCc
Q 002346 723 DM--RAKVADFGLVKNAPDGKY------SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPD 794 (933)
Q Consensus 723 ~~--~~kl~DfGla~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~ 794 (933)
++ .+||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||++|+.||......
T Consensus 187 ~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~ 266 (345)
T 2v62_A 187 KNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKD 266 (345)
T ss_dssp SSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTC
T ss_pred CCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccc
Confidence 87 999999999986543221 1113457999999999999889999999999999999999999999653222
Q ss_pred hhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhh
Q 002346 795 DRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLV 863 (933)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~ 863 (933)
... ......... ..++..+...... ......+.+++.+||+.||++||+++++++.|+.+.
T Consensus 267 ~~~-~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~ 327 (345)
T 2v62_A 267 PVA-VQTAKTNLL---DELPQSVLKWAPS----GSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHG 327 (345)
T ss_dssp HHH-HHHHHHHHH---HTTTHHHHHHSCT----TSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTC
T ss_pred cHH-HHHHHHhhc---ccccHHHHhhccc----cccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccC
Confidence 211 111111111 1111111000000 011246889999999999999999999999998764
No 157
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=1.4e-38 Score=350.17 Aligned_cols=266 Identities=28% Similarity=0.377 Sum_probs=208.9
Q ss_pred cCCccCCccccCCCeEEEEEEe-----CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEee--eCce
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-----PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCI--NGSE 653 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~ 653 (933)
++|++.+.||+|+||.||+|.. .+++.||||++... .....+.+.+|++++++++||||+++++++. +...
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 100 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS--GPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQS 100 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC--CHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCce
Confidence 6889999999999999999973 46889999999765 3455678999999999999999999999886 4566
Q ss_pred eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccc
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGL 733 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGl 733 (933)
.++||||+++++|.+++.... ..+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||+
T Consensus 101 ~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~ 173 (327)
T 3lxl_A 101 LRLVMEYLPSGCLRDFLQRHR----ARLDASRLLLYSSQICKGMEYLGS---RRCVHRDLAARNILVESEAHVKIADFGL 173 (327)
T ss_dssp EEEEEECCTTCBHHHHHHHHG----GGCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCGGG
T ss_pred EEEEEeecCCCCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChhhEEECCCCCEEEccccc
Confidence 889999999999999996522 358999999999999999999999 8999999999999999999999999999
Q ss_pred cccCCCCCce--eecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchh--------hHHHHHH
Q 002346 734 VKNAPDGKYS--VETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDR--------AHLVTWF 803 (933)
Q Consensus 734 a~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~--------~~~~~~~ 803 (933)
++........ ......||+.|+|||++.+..++.++||||||+++|||++|+.||........ .......
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 253 (327)
T 3lxl_A 174 AKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRL 253 (327)
T ss_dssp CEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHH
T ss_pred ceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHH
Confidence 9876544322 22345688899999999888899999999999999999999999864321100 0000111
Q ss_pred HHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhc
Q 002346 804 RRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQW 866 (933)
Q Consensus 804 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~ 866 (933)
........ .....+. ....+.+++.+|++.||++||++.|+++.|+.+....
T Consensus 254 ~~~~~~~~--~~~~~~~---------~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 305 (327)
T 3lxl_A 254 LELLEEGQ--RLPAPPA---------CPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGS 305 (327)
T ss_dssp HHHHHTTC--CCCCCTT---------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC----
T ss_pred HHHhhccc--CCCCCCc---------ccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence 11111111 1111111 1245789999999999999999999999998875444
No 158
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.5e-38 Score=347.63 Aligned_cols=260 Identities=25% Similarity=0.427 Sum_probs=203.9
Q ss_pred hcCCccCCccccCCCeEEEEEEeCC-----CcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCcee
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPD-----GTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSER 654 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 654 (933)
.++|++.+.||+|+||.||+|.... +..||||++.... ......++.+|+.++++++||||+++++++...+..
T Consensus 43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 121 (333)
T 1mqb_A 43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY-TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPM 121 (333)
T ss_dssp TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSE
T ss_pred hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC-CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCc
Confidence 3578888999999999999996532 2469999997653 344567899999999999999999999999999999
Q ss_pred EEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccc
Q 002346 655 LLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLV 734 (933)
Q Consensus 655 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla 734 (933)
++||||+++++|.+++... ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||++
T Consensus 122 ~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~ 194 (333)
T 1mqb_A 122 MIITEYMENGALDKFLREK----DGEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLS 194 (333)
T ss_dssp EEEEECCTTEEHHHHHHHT----TTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC-
T ss_pred EEEEeCCCCCcHHHHHHhC----CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChheEEECCCCcEEECCCCcc
Confidence 9999999999999999652 2468999999999999999999999 89999999999999999999999999999
Q ss_pred ccCCCCCce--eecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccC
Q 002346 735 KNAPDGKYS--VETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKE 811 (933)
Q Consensus 735 ~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~ 811 (933)
+........ ......+++.|+|||++.+..++.++||||||+++|||++ |+.||......+ ... .... ..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~---~~~---~~~~-~~ 267 (333)
T 1mqb_A 195 RVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHE---VMK---AIND-GF 267 (333)
T ss_dssp ----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH---HHH---HHHT-TC
T ss_pred hhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHH---HHH---HHHC-CC
Confidence 865543211 1223356789999999998899999999999999999999 999997653321 111 1111 11
Q ss_pred CCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 812 NIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 812 ~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
..+ .... ....+.+++.+||+.+|++||++.++++.|+.+...
T Consensus 268 ~~~--~~~~---------~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~ 310 (333)
T 1mqb_A 268 RLP--TPMD---------CPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA 310 (333)
T ss_dssp CCC--CCTT---------CBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred cCC--Cccc---------CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 111 1111 124577999999999999999999999999988654
No 159
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=1e-38 Score=366.72 Aligned_cols=263 Identities=21% Similarity=0.307 Sum_probs=199.0
Q ss_pred hcCCccCCccccCCCeEEEEEE-eCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeC------c
Q 002346 580 TDNFSEANILGRGGFGVVYGGE-LPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCING------S 652 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~ 652 (933)
.++|++.+.||+|+||.||+|. ..+++.||||++..........+++.+|+.+++.++|||||++++++... .
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 5789999999999999999995 45789999999987654556678899999999999999999999998654 4
Q ss_pred eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccc
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFG 732 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfG 732 (933)
..++||||+++ +|.+.+. ..+++.++..++.|+++||+|||+ ++|+||||||+|||++.++.+||+|||
T Consensus 141 ~~~lv~E~~~~-~l~~~~~-------~~l~~~~~~~~~~qil~aL~~lH~---~~iiHrDlkp~NIll~~~~~~kl~DFG 209 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQ-------MELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFG 209 (464)
T ss_dssp EEEEEEECCSE-EHHHHHT-------SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCC
T ss_pred eEEEEEeCCCC-CHHHHHh-------hcCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChHhEEEeCCCCEEEEEEE
Confidence 57999999965 5766663 248999999999999999999999 899999999999999999999999999
Q ss_pred ccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHH-------
Q 002346 733 LVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRR------- 805 (933)
Q Consensus 733 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~------- 805 (933)
+++...... ..+...||+.|+|||++.+..++.++||||+||++|||++|+.||......+.. ...+..
T Consensus 210 ~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~--~~i~~~lg~p~~~ 285 (464)
T 3ttj_A 210 LARTAGTSF--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQW--NKVIEQLGTPCPE 285 (464)
T ss_dssp CC-----CC--CC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHH--HHHHHHHCSCCHH
T ss_pred eeeecCCCc--ccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH--HHHHHhcCCCCHH
Confidence 998665432 234568999999999999999999999999999999999999999765432211 111110
Q ss_pred -----------HhhccCC-----CCcccCCC-CC-CChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 806 -----------VLISKEN-----IPKAIDPN-LN-LDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 806 -----------~~~~~~~-----~~~~~d~~-l~-~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
....... ++..+... .. ...........+.+++.+||+.||++|||++|+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 355 (464)
T 3ttj_A 286 FMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ 355 (464)
T ss_dssp HHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 0000000 00000000 00 01111222456889999999999999999999987
No 160
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=2.8e-38 Score=362.82 Aligned_cols=265 Identities=21% Similarity=0.286 Sum_probs=210.7
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCC-CcceeEEeEeeeCceeEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRH-RHLVALLGYCINGSERLL 656 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~~~~~l 656 (933)
+.++|++.+.||+|+||.||+|.. .+++.||||++...... .++.+|+++++.++| ++|+.+..++...+..++
T Consensus 5 i~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~----~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~l 80 (483)
T 3sv0_A 5 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH----PQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVL 80 (483)
T ss_dssp ETTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS----CCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEE
T ss_pred cCCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc----HHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEE
Confidence 357899999999999999999964 67999999987755322 357899999999976 566666677778888999
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEe---cCCCcEEEecccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILI---GDDMRAKVADFGL 733 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill---~~~~~~kl~DfGl 733 (933)
||||+ +++|.+++... ...+++.+++.|+.||+.||+|||+ ++||||||||+|||+ +.++.+||+|||+
T Consensus 81 vme~~-g~sL~~ll~~~----~~~l~~~~~~~i~~qi~~aL~yLH~---~gIvHrDIKP~NILl~~~~~~~~vkL~DFGl 152 (483)
T 3sv0_A 81 VMDLL-GPSLEDLFNFC----SRKLSLKTVLMLADQMINRVEFVHS---KSFLHRDIKPDNFLMGLGRRANQVYIIDFGL 152 (483)
T ss_dssp EEECC-CCBHHHHHHHT----TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTTCEEECCCTT
T ss_pred EEECC-CCCHHHHHHhh----cCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccCcceEEEecCCCCCeEEEEeCCc
Confidence 99999 99999999642 2469999999999999999999999 899999999999999 6889999999999
Q ss_pred cccCCCCCce------eecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHh
Q 002346 734 VKNAPDGKYS------VETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVL 807 (933)
Q Consensus 734 a~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~ 807 (933)
++........ ......||+.|+|||++.+..++.++|||||||++|||++|+.||..............+....
T Consensus 153 a~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~ 232 (483)
T 3sv0_A 153 AKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKK 232 (483)
T ss_dssp CEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHH
T ss_pred ceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhcc
Confidence 9866543321 1235689999999999999999999999999999999999999998765443333222222211
Q ss_pred hccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhc
Q 002346 808 ISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQW 866 (933)
Q Consensus 808 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~ 866 (933)
.. ..+. .+.. ....++.+++.+||+.+|++||++.++++.|+.+....
T Consensus 233 ~~-~~~~-~l~~---------~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~ 280 (483)
T 3sv0_A 233 VA-TSIE-ALCR---------GYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIRE 280 (483)
T ss_dssp HH-SCHH-HHHT---------TSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred cc-ccHH-HHhc---------CCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHHc
Confidence 10 0000 0001 11246889999999999999999999999999987653
No 161
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=358.94 Aligned_cols=276 Identities=19% Similarity=0.283 Sum_probs=214.1
Q ss_pred hcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCc--eeEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGS--ERLL 656 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~l 656 (933)
.++|++.+.||+|+||.||+|... +|+.||||++..... ....+.+.+|++++++++||||+++++++.... ..++
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~l 86 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF-LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVL 86 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG-GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccc-cchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEE
Confidence 467999999999999999999654 589999999976532 334678889999999999999999999998755 7799
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEe----cCCCcEEEeccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILI----GDDMRAKVADFG 732 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill----~~~~~~kl~DfG 732 (933)
||||+++|+|.+++..... ...+++.+++.++.|++.||+|||+ ++|+||||||+||++ +.++.+||+|||
T Consensus 87 v~e~~~~g~L~~~l~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG 161 (396)
T 4eut_A 87 IMEFCPCGSLYTVLEEPSN--AYGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFG 161 (396)
T ss_dssp EECCCTTEEHHHHTTSGGG--TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEECTTSCEEEEECCGG
T ss_pred EEecCCCCCHHHHHHhhhc--ccCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCcCHHHEEEeecCCCceeEEEecCC
Confidence 9999999999999966322 2348999999999999999999999 899999999999999 788889999999
Q ss_pred ccccCCCCCceeecccccccCcccccccCC--------CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHH
Q 002346 733 LVKNAPDGKYSVETRLAGTFGYLAPEYAAT--------GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFR 804 (933)
Q Consensus 733 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~ 804 (933)
+++....... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||......... ...+.
T Consensus 162 ~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~--~~~~~ 237 (396)
T 4eut_A 162 AARELEDDEQ--FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRN--KEVMY 237 (396)
T ss_dssp GCEECCCGGG--SSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTC--HHHHH
T ss_pred CceEccCCCc--cccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccch--HHHHH
Confidence 9987654332 234579999999998864 56788999999999999999999999754322111 11122
Q ss_pred HHhhccC-CCCcc----------cCCCCC-CChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 805 RVLISKE-NIPKA----------IDPNLN-LDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 805 ~~~~~~~-~~~~~----------~d~~l~-~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
....... ..... ....+. ...........+.+++.+||+.||++||++.|+++.++.+++.
T Consensus 238 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~ 310 (396)
T 4eut_A 238 KIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR 310 (396)
T ss_dssp HHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred HHhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence 2221111 00000 000111 0112245556788999999999999999999999999888764
No 162
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=7.6e-39 Score=355.93 Aligned_cols=254 Identities=24% Similarity=0.353 Sum_probs=204.0
Q ss_pred cCCccCCccccCCCeEEEEEEe----CCCcEEEEEEeccccC--CchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCce
Q 002346 581 DNFSEANILGRGGFGVVYGGEL----PDGTKIAVKRMESNTM--GNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGSE 653 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~----~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 653 (933)
++|++.+.||+|+||.||+|.. .+++.||||+++.... .....+.+.+|+++++++ +||||+++++++..+..
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 133 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 133 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence 6899999999999999999976 4789999999876432 122345678899999999 69999999999999999
Q ss_pred eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccc
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGL 733 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGl 733 (933)
.++||||+++|+|.+++... ..+++.+++.++.|+++||+|||+ ++|+||||||+|||++.++.+||+|||+
T Consensus 134 ~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~DfG~ 205 (355)
T 1vzo_A 134 LHLILDYINGGELFTHLSQR-----ERFTEHEVQIYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLTDFGL 205 (355)
T ss_dssp EEEEECCCCSCBHHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEESCSSE
T ss_pred EEEEeecCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCcEEEeeCCC
Confidence 99999999999999999752 458999999999999999999999 8999999999999999999999999999
Q ss_pred cccCCCCCceeecccccccCcccccccCC--CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccC
Q 002346 734 VKNAPDGKYSVETRLAGTFGYLAPEYAAT--GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKE 811 (933)
Q Consensus 734 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~ 811 (933)
++..............||+.|+|||++.+ ..++.++|||||||++|||++|+.||......... ............
T Consensus 206 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~--~~~~~~~~~~~~ 283 (355)
T 1vzo_A 206 SKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQ--AEISRRILKSEP 283 (355)
T ss_dssp EEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCH--HHHHHHHHHCCC
T ss_pred CeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchH--HHHHHHHhccCC
Confidence 98665443333345679999999999975 34789999999999999999999999754332221 122222222222
Q ss_pred CCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCC-----CHHHHHH
Q 002346 812 NIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRP-----DMGHAVN 857 (933)
Q Consensus 812 ~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RP-----s~~evl~ 857 (933)
..+. .+ ...+.+++.+||+.||++|| +++|+++
T Consensus 284 ~~~~----~~---------~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~ 321 (355)
T 1vzo_A 284 PYPQ----EM---------SALAKDLIQRLLMKDPKKRLGCGPRDADEIKE 321 (355)
T ss_dssp CCCT----TS---------CHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred CCCc----cc---------CHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHc
Confidence 2211 11 13567999999999999999 8888876
No 163
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=2.9e-38 Score=356.37 Aligned_cols=251 Identities=23% Similarity=0.311 Sum_probs=191.5
Q ss_pred hcCCccC-CccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHh-cCCCcceeEEeEeee----Cc
Q 002346 580 TDNFSEA-NILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTK-VRHRHLVALLGYCIN----GS 652 (933)
Q Consensus 580 ~~~~~~~-~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~l~~~~~~----~~ 652 (933)
.++|.+. +.||+|+||.||++.. .+|+.||||++... ..+.+|+.++.+ .+||||+++++++.. ..
T Consensus 60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-------~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~ 132 (400)
T 1nxk_A 60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-------PKARREVELHWRASQCPHIVRIVDVYENLYAGRK 132 (400)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-------hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCc
Confidence 3567666 7899999999999955 47899999998643 457788888754 489999999999875 56
Q ss_pred eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecC---CCcEEEe
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGD---DMRAKVA 729 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~---~~~~kl~ 729 (933)
..++||||+++|+|.+++... +...+++.+++.|+.||++||+|||+ ++|+||||||+|||++. ++.+||+
T Consensus 133 ~~~lv~E~~~gg~L~~~l~~~---~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~~~kl~ 206 (400)
T 1nxk_A 133 CLLIVMECLDGGELFSRIQDR---GDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLT 206 (400)
T ss_dssp EEEEEEECCCSEEHHHHHHCC------CCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSTTCCEEEC
T ss_pred EEEEEEEeCCCCcHHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCcCcceEEEecCCCCccEEEE
Confidence 789999999999999999652 22469999999999999999999999 89999999999999997 7899999
Q ss_pred cccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhh-HHHHHHHHHhh
Q 002346 730 DFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRA-HLVTWFRRVLI 808 (933)
Q Consensus 730 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~-~~~~~~~~~~~ 808 (933)
|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......... .... ....
T Consensus 207 DFG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~---~i~~ 281 (400)
T 1nxk_A 207 DFGFAKETTSHN--SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKT---RIRM 281 (400)
T ss_dssp CCTTCEECC-------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHH---HHHH
T ss_pred ecccccccCCCC--ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHH---HHHc
Confidence 999998655322 223467899999999999999999999999999999999999999865432210 1111 1111
Q ss_pred ccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 809 SKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 809 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
.....+...... ...++.+++.+||+.||++||++.|+++
T Consensus 282 ~~~~~~~~~~~~---------~s~~~~~li~~~L~~dP~~Rpt~~eil~ 321 (400)
T 1nxk_A 282 GQYEFPNPEWSE---------VSEEVKMLIRNLLKTEPTQRMTITEFMN 321 (400)
T ss_dssp TCCCCCTTTTTT---------SCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CcccCCCccccc---------CCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 111111111011 1245789999999999999999999987
No 164
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=355.06 Aligned_cols=268 Identities=13% Similarity=0.226 Sum_probs=209.4
Q ss_pred hcCCccCCccccCCCeEEEEEEeC---------CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCccee-------
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP---------DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVA------- 643 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~---------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------- 643 (933)
.++|++.+.||+|+||.||+|... +++.||||++... +.+.+|+.++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-------~~~~~E~~~l~~l~h~niv~~~~~~~~ 113 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-------GRLFNEQNFFQRAAKPLQVNKWKKLYS 113 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-------STHHHHHHHHHHHCCHHHHHHHHHHTT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-------chHHHHHHHHHHhcccchhhhhhhhcc
Confidence 368999999999999999999765 3789999998754 36889999999999999998
Q ss_pred --------EEeEeee-CceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCC
Q 002346 644 --------LLGYCIN-GSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLK 714 (933)
Q Consensus 644 --------l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik 714 (933)
+++++.. +...++||||+ +++|.+++.... ...+++.+++.++.|+++||+|||+ ++|+|||||
T Consensus 114 ~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~---~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dik 186 (352)
T 2jii_A 114 TPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSP---KHVLSERSVLQVACRLLDALEFLHE---NEYVHGNVT 186 (352)
T ss_dssp CTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSG---GGCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCC
T ss_pred CCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCC---cCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCC
Confidence 6777766 67889999999 999999997631 2569999999999999999999999 899999999
Q ss_pred CCcEEecCCC--cEEEecccccccCCCCCce------eecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCC
Q 002346 715 PSNILIGDDM--RAKVADFGLVKNAPDGKYS------VETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRK 786 (933)
Q Consensus 715 ~~Nill~~~~--~~kl~DfGla~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~ 786 (933)
|+||+++.++ .+||+|||+++........ ......||+.|+|||++.+..++.++||||||+++|||++|+.
T Consensus 187 p~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~ 266 (352)
T 2jii_A 187 AENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFL 266 (352)
T ss_dssp GGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCC
Confidence 9999999998 8999999999865432211 1133579999999999999899999999999999999999999
Q ss_pred CCCCCCCchhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhc
Q 002346 787 ALDDTMPDDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQW 866 (933)
Q Consensus 787 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~ 866 (933)
||....+... ............. ....+..... ......+.+++.+|++.||++||+++++++.|+++.+.+
T Consensus 267 pf~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~ 338 (352)
T 2jii_A 267 PWTNCLPNTE-DIMKQKQKFVDKP---GPFVGPCGHW----IRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDL 338 (352)
T ss_dssp TTGGGTTCHH-HHHHHHHHHHHSC---CCEECTTSCE----ECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred CcccCCcCHH-HHHHHHHhccCCh---hhhhhhcccc----CCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhc
Confidence 9986543222 2222222211111 1111111000 001145789999999999999999999999999998776
Q ss_pred CCC
Q 002346 867 KPA 869 (933)
Q Consensus 867 ~~~ 869 (933)
...
T Consensus 339 ~~~ 341 (352)
T 2jii_A 339 RVS 341 (352)
T ss_dssp TCC
T ss_pred CCC
Confidence 543
No 165
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.7e-38 Score=354.57 Aligned_cols=261 Identities=29% Similarity=0.459 Sum_probs=198.4
Q ss_pred CCccCCccccCCCeEEEEEEeC--CC--cEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeee-CceeEE
Q 002346 582 NFSEANILGRGGFGVVYGGELP--DG--TKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCIN-GSERLL 656 (933)
Q Consensus 582 ~~~~~~~lg~G~~g~Vy~~~~~--~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~l 656 (933)
.|++.+.||+|+||.||+|... ++ ..||||.+.... .....++|.+|+.++++++||||+++++++.. ++..++
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~l 168 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT-DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 168 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCS-CSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCC-CHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEE
Confidence 4677889999999999999653 22 368999887542 34557889999999999999999999998754 557899
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKN 736 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~ 736 (933)
||||+++|+|.+++... ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||+++.
T Consensus 169 v~e~~~~g~L~~~l~~~----~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~ 241 (373)
T 3c1x_A 169 VLPYMKHGDLRNFIRNE----THNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARD 241 (373)
T ss_dssp EEECCTTCBHHHHHHCT----TCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC-----
T ss_pred EEECCCCCCHHHHHhhc----ccCCCHHHHHHHHHHHHHHHHHHHH---CCEecCccchheEEECCCCCEEEeecccccc
Confidence 99999999999999641 2458899999999999999999999 8999999999999999999999999999986
Q ss_pred CCCCCce---eecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCC
Q 002346 737 APDGKYS---VETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKEN 812 (933)
Q Consensus 737 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (933)
....... ......|++.|+|||++.+..++.++||||||+++|||+| |.+||......+... . ..... .
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~---~---~~~~~-~ 314 (373)
T 3c1x_A 242 MYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITV---Y---LLQGR-R 314 (373)
T ss_dssp ----------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHH---H---HHTTC-C
T ss_pred ccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHH---H---HHcCC-C
Confidence 5433211 1233467889999999998999999999999999999999 667776554332211 1 11111 1
Q ss_pred CCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 813 IPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 813 ~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
. ...... ...+.+++.+||+.+|++||++.|+++.|+.+...+..
T Consensus 315 ~--~~p~~~---------~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~ 359 (373)
T 3c1x_A 315 L--LQPEYC---------PDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG 359 (373)
T ss_dssp C--CCCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCS
T ss_pred C--CCCCCC---------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhccc
Confidence 0 011111 13577999999999999999999999999999877664
No 166
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=3.3e-38 Score=342.45 Aligned_cols=262 Identities=29% Similarity=0.428 Sum_probs=205.6
Q ss_pred cCCccCCccccCCCeEEEEEEeCC----CcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEee-eCceeE
Q 002346 581 DNFSEANILGRGGFGVVYGGELPD----GTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCI-NGSERL 655 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~-~~~~~~ 655 (933)
.+|++.+.||+|+||.||+|...+ +..||+|.+.... .....+.+.+|+.++++++||||+++++++. .+...+
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT-DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 103 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCC-SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCC-CHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence 468889999999999999996532 2368999987643 3455678999999999999999999999865 456789
Q ss_pred EEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 656 LVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 656 lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
+||||+++|+|.+++... ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||+++
T Consensus 104 ~v~e~~~~~~L~~~l~~~----~~~~~~~~~~~i~~ql~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~ 176 (298)
T 3f66_A 104 VVLPYMKHGDLRNFIRNE----THNPTVKDLIGFGLQVAKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLAR 176 (298)
T ss_dssp EEEECCTTCBHHHHHHCT----TCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSCGGGC
T ss_pred EEEeCCCCCCHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCchheEEECCCCCEEECcccccc
Confidence 999999999999999641 2458999999999999999999999 899999999999999999999999999998
Q ss_pred cCCCCCc---eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcC-CCCCCCCCCchhhHHHHHHHHHhhccC
Q 002346 736 NAPDGKY---SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITG-RKALDDTMPDDRAHLVTWFRRVLISKE 811 (933)
Q Consensus 736 ~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG-~~p~~~~~~~~~~~~~~~~~~~~~~~~ 811 (933)
....... .......||+.|+|||.+.+..++.++||||||+++|||++| .+||......+.. . .......
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~---~---~~~~~~~ 250 (298)
T 3f66_A 177 DMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDIT---V---YLLQGRR 250 (298)
T ss_dssp CCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHH---H---HHHTTCC
T ss_pred cccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHH---H---HHhcCCC
Confidence 6554332 122345678899999999988999999999999999999995 5555543322211 1 1111111
Q ss_pred CCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 812 NIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 812 ~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
....... ...+.+++.+|++.+|++||++.|+++.|+.+...+..
T Consensus 251 ---~~~~~~~---------~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~ 295 (298)
T 3f66_A 251 ---LLQPEYC---------PDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG 295 (298)
T ss_dssp ---CCCCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSCC
T ss_pred ---CCCCccC---------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhcc
Confidence 1111111 13577999999999999999999999999998876654
No 167
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=3.3e-38 Score=358.47 Aligned_cols=260 Identities=23% Similarity=0.349 Sum_probs=196.6
Q ss_pred HHhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC------chhHHHHHHHHHHHHhcCCCcceeEEeEeee
Q 002346 578 QVTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG------NKGLSEFQAEIAVLTKVRHRHLVALLGYCIN 650 (933)
Q Consensus 578 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 650 (933)
.+.++|.+.+.||+|+||.||+|.. .+++.||||++...... ......+.+|+.++++++||||+++++++.
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~- 210 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD- 210 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-
Confidence 4578999999999999999999954 56899999998765321 112235889999999999999999999975
Q ss_pred CceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCC---cEE
Q 002346 651 GSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDM---RAK 727 (933)
Q Consensus 651 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~---~~k 727 (933)
.+..++||||+++|+|.+++.. ...+++.+++.++.|+++||+|||+ ++|+||||||+|||++.++ .+|
T Consensus 211 ~~~~~lv~e~~~~g~L~~~l~~-----~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~~~~~k 282 (419)
T 3i6u_A 211 AEDYYIVLELMEGGELFDKVVG-----NKRLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIK 282 (419)
T ss_dssp SSEEEEEEECCTTCBGGGGTSS-----SCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSSSCCEE
T ss_pred cCceEEEEEcCCCCcHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEecCCCcceEE
Confidence 4567999999999999998854 3569999999999999999999999 8999999999999997544 599
Q ss_pred EecccccccCCCCCceeecccccccCcccccccCC---CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHH
Q 002346 728 VADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAAT---GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFR 804 (933)
Q Consensus 728 l~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~ 804 (933)
|+|||+++...... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||........ +...+
T Consensus 283 l~DFG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~--~~~~i- 357 (419)
T 3i6u_A 283 ITDFGHSKILGETS--LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS--LKDQI- 357 (419)
T ss_dssp ECCSSTTTSCC-------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCC--HHHHH-
T ss_pred EeecccceecCCCc--cccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHH--HHHHH-
Confidence 99999998765432 2344679999999999853 5788899999999999999999999976433221 11111
Q ss_pred HHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 805 RVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 805 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
........... .......+.+++.+||+.||++||+++|+++ ++|..
T Consensus 358 --~~~~~~~~~~~---------~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~------hp~~~ 404 (419)
T 3i6u_A 358 --TSGKYNFIPEV---------WAEVSEKALDLVKKLLVVDPKARFTTEEALR------HPWLQ 404 (419)
T ss_dssp --HTTCCCCCHHH---------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH------SGGGC
T ss_pred --hcCCCCCCchh---------hcccCHHHHHHHHHHccCChhHCcCHHHHhC------CcccC
Confidence 11111110000 0111246789999999999999999999987 66664
No 168
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=4.8e-39 Score=369.16 Aligned_cols=256 Identities=25% Similarity=0.389 Sum_probs=200.1
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC-CchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
.++|++.+.||+|+||.||+|.. .+|+.||||++..... .......+.+|+.+++.++||||+++++++...+..++|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 46899999999999999999954 5789999999976532 233456788999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+++|+|.+++.. ...+++..+..++.|+++||+|||+ .++|+||||||+|||++.++.+||+|||+++..
T Consensus 227 ~e~~~~~~L~~~l~~-----~~~~~~~~~~~~~~qi~~aL~~LH~--~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~ 299 (446)
T 4ejn_A 227 MEYANGGELFFHLSR-----ERVFSEDRARFYGAEIVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEG 299 (446)
T ss_dssp ECCCSSCBHHHHHHH-----HSCCCHHHHHHHHHHHHHHHHHHHH--HTCCCCCCCCGGGEEECSSSCEEECCCCCCCTT
T ss_pred EeeCCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHhh--cCCEEECCCCHHHEEECCCCCEEEccCCCceec
Confidence 999999999999965 2468999999999999999999996 268999999999999999999999999999864
Q ss_pred CCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||....... + ..........++..+
T Consensus 300 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~---~---~~~i~~~~~~~p~~~ 372 (446)
T 4ejn_A 300 IKDGA-TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK---L---FELILMEEIRFPRTL 372 (446)
T ss_dssp CC------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---H---HHHHHHCCCCCCTTS
T ss_pred cCCCc-ccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH---H---HHHHHhCCCCCCccC
Confidence 43322 2344689999999999999999999999999999999999999997653221 1 122222222222211
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCC-----CHHHHHHHHhhhhhhcCC
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRP-----DMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RP-----s~~evl~~L~~~~~~~~~ 868 (933)
. ..+.+++.+||+.||++|| +++|+++ ++|..
T Consensus 373 ----~---------~~~~~li~~~L~~dP~~R~~~~~~t~~ell~------hp~f~ 409 (446)
T 4ejn_A 373 ----G---------PEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ------HRFFA 409 (446)
T ss_dssp ----C---------HHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT------SGGGT
T ss_pred ----C---------HHHHHHHHHHcccCHHHhCCCCCCCHHHHHh------Ccccc
Confidence 1 3577999999999999999 9999876 56654
No 169
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=4.2e-38 Score=338.95 Aligned_cols=254 Identities=22% Similarity=0.384 Sum_probs=204.5
Q ss_pred HhcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCc----hhHHHHHHHHHHHHhcCCCcceeEEeEeeeCce
Q 002346 579 VTDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGN----KGLSEFQAEIAVLTKVRHRHLVALLGYCINGSE 653 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 653 (933)
+.++|++.+.||+|+||.||+|... +++.||+|++....... ...+.+.+|+.++++++||||+++++++.++..
T Consensus 3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~ 82 (283)
T 3bhy_A 3 VEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTD 82 (283)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred hhhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCe
Confidence 3467999999999999999999664 68999999987654322 236789999999999999999999999999999
Q ss_pred eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCC----cEEEe
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDM----RAKVA 729 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~----~~kl~ 729 (933)
.++||||+++++|.+++.. ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++ .+||+
T Consensus 83 ~~lv~e~~~~~~L~~~l~~-----~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~~~~kl~ 154 (283)
T 3bhy_A 83 VVLILELVSGGELFDFLAE-----KESLTEDEATQFLKQILDGVHYLHS---KRIAHFDLKPENIMLLDKNVPNPRIKLI 154 (283)
T ss_dssp EEEEEECCCSCBHHHHHHH-----HSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSSSSCCEEEC
T ss_pred EEEEEeecCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChHHEEEecCCCCCCceEEE
Confidence 9999999999999999965 2468999999999999999999999 8999999999999998877 89999
Q ss_pred cccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhc
Q 002346 730 DFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLIS 809 (933)
Q Consensus 730 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~ 809 (933)
|||++........ .....|++.|+|||++.+..++.++||||||+++|||++|+.||........ .......
T Consensus 155 dfg~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~------~~~~~~~ 226 (283)
T 3bhy_A 155 DFGIAHKIEAGNE--FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQET------LTNISAV 226 (283)
T ss_dssp CCTTCEECC----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH------HHHHHTT
T ss_pred ecccceeccCCCc--ccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHH------HHHhHhc
Confidence 9999986654321 2345789999999999988999999999999999999999999976532211 1111111
Q ss_pred cCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 810 KENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 810 ~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
....+....+ .....+.+++.+|++.||++||+++|+++
T Consensus 227 ~~~~~~~~~~---------~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 265 (283)
T 3bhy_A 227 NYDFDEEYFS---------NTSELAKDFIRRLLVKDPKRRMTIAQSLE 265 (283)
T ss_dssp CCCCCHHHHT---------TCCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred ccCCcchhcc---------cCCHHHHHHHHHHccCCHhHCcCHHHHHh
Confidence 1111111101 11245779999999999999999999987
No 170
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=1.3e-38 Score=351.68 Aligned_cols=265 Identities=24% Similarity=0.392 Sum_probs=212.0
Q ss_pred hcCCccCCccccCCCeEEEEEEeC-C-----CcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCc
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP-D-----GTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGS 652 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~-~-----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 652 (933)
.++|++.+.||+|+||.||+|... . +..||+|.+.... .....+.+.+|+.+++++ +||||+++++++..++
T Consensus 45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 123 (333)
T 2i1m_A 45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA-HADEKEALMSELKIMSHLGQHENIVNLLGACTHGG 123 (333)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc-ChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCC
Confidence 478999999999999999999653 2 3489999997653 344567899999999999 8999999999999999
Q ss_pred eeEEEEeecCCCChhhHhhhcccC---------CCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCC
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDH---------GYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDD 723 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~---------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~ 723 (933)
..++||||+++|+|.+++...... ....+++.+++.++.|++.||+|||+ ++|+||||||+||+++.+
T Consensus 124 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~~ 200 (333)
T 2i1m_A 124 PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLAS---KNCIHRDVAARNVLLTNG 200 (333)
T ss_dssp SCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGCEEEGG
T ss_pred ceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhc---CCcccCCcccceEEECCC
Confidence 999999999999999999753210 12458999999999999999999999 899999999999999999
Q ss_pred CcEEEecccccccCCCCC-ceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHH
Q 002346 724 MRAKVADFGLVKNAPDGK-YSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVT 801 (933)
Q Consensus 724 ~~~kl~DfGla~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~ 801 (933)
+.+||+|||+++...... ........||+.|+|||.+.+..++.++||||||+++|||+| |+.||........ ...
T Consensus 201 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~--~~~ 278 (333)
T 2i1m_A 201 HVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSK--FYK 278 (333)
T ss_dssp GEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHH--HHH
T ss_pred CeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHH--HHH
Confidence 999999999998554332 222344567889999999988899999999999999999999 9999976543322 111
Q ss_pred HHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 802 WFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 802 ~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
.... ... ....... ...+.+++.+||+.||.+||++.|+++.|+.+...
T Consensus 279 ~~~~----~~~--~~~~~~~---------~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~ 327 (333)
T 2i1m_A 279 LVKD----GYQ--MAQPAFA---------PKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQE 327 (333)
T ss_dssp HHHH----TCC--CCCCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHhc----CCC--CCCCCCC---------CHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHh
Confidence 1111 111 0011111 13577999999999999999999999999887654
No 171
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=1.2e-38 Score=351.20 Aligned_cols=267 Identities=22% Similarity=0.349 Sum_probs=202.9
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
.++|++.+.||+|+||.||+|.. .+|+.||||++..........+.+.+|+.++++++||||+++++++.+....++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 46899999999999999999965 45899999998776555555677899999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+++++|.+++.. ...+++..++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||+++...
T Consensus 104 e~~~~~~l~~~~~~-----~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 175 (331)
T 4aaa_A 104 EFVDHTILDDLELF-----PNGLDYQVVQKYLFQIINGIGFCHS---HNIIHRDIKPENILVSQSGVVKLCDFGFARTLA 175 (331)
T ss_dssp ECCSEEHHHHHHHS-----TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCTTC----
T ss_pred ecCCcchHHHHHhh-----ccCCCHHHHHHHHHHHHHHHHHHHH---CCEEccCcChheEEEcCCCcEEEEeCCCceeec
Confidence 99999999887643 2458999999999999999999999 899999999999999999999999999997654
Q ss_pred CCCceeecccccccCcccccccCCC-CCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHH----------Hh
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAATG-RVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRR----------VL 807 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~----------~~ 807 (933)
.... ......|++.|+|||++.+. .++.++|||||||++|||++|+.||......+.. ...... ..
T Consensus 176 ~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 252 (331)
T 4aaa_A 176 APGE-VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQL--YHIMMCLGNLIPRHQELF 252 (331)
T ss_dssp ---------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH--HHHHHHHCSCCHHHHHHH
T ss_pred CCcc-ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHH--HHHHHHhCCCChhhhhHh
Confidence 4322 22345789999999998765 7899999999999999999999999765432221 111100 00
Q ss_pred hccCCCCcccCCCCCCC----hhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 808 ISKENIPKAIDPNLNLD----EETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 808 ~~~~~~~~~~d~~l~~~----~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
...........+..... .........+.+++.+||+.||++||+++|+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 306 (331)
T 4aaa_A 253 NKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH 306 (331)
T ss_dssp HHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred hhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 00000000001111100 001122356889999999999999999999986
No 172
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=4.3e-38 Score=366.01 Aligned_cols=253 Identities=24% Similarity=0.351 Sum_probs=200.9
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
+.++|++.+.||+|+||.||+|.. .+++.||+|++............+.+|+.+++.++|||||++++++.+....++|
T Consensus 35 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 114 (494)
T 3lij_A 35 LSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLV 114 (494)
T ss_dssp HHHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 356799999999999999999965 4789999999987654455567899999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCC---CcEEEeccccc
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDD---MRAKVADFGLV 734 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~---~~~kl~DfGla 734 (933)
|||+++|+|.+++... ..+++.+++.++.|+++||+|||+ ++|+||||||+|||++.+ +.+||+|||++
T Consensus 115 ~e~~~~g~L~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a 186 (494)
T 3lij_A 115 MECYKGGELFDEIIHR-----MKFNEVDAAVIIKQVLSGVTYLHK---HNIVHRDLKPENLLLESKEKDALIKIVDFGLS 186 (494)
T ss_dssp EECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred EecCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCChhhEEEeCCCCCCcEEEEECCCC
Confidence 9999999999988652 468999999999999999999999 899999999999999764 45999999999
Q ss_pred ccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCC
Q 002346 735 KNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIP 814 (933)
Q Consensus 735 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (933)
+...... ......||+.|+|||++. +.++.++||||+||++|+|++|+.||......+. ...........+
T Consensus 187 ~~~~~~~--~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~------~~~i~~~~~~~~ 257 (494)
T 3lij_A 187 AVFENQK--KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEI------LRKVEKGKYTFD 257 (494)
T ss_dssp EECBTTB--CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHTCCCCC
T ss_pred eECCCCc--cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHH------HHHHHhCCCCCC
Confidence 8665432 233457999999999886 5699999999999999999999999986543221 122222121111
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 815 KAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 815 ~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
....+. ....+.+++.+||+.+|++|||+.|+++
T Consensus 258 ~~~~~~---------~s~~~~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 258 SPEWKN---------VSEGAKDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp SGGGTT---------SCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred chhccc---------CCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence 111111 1245779999999999999999999986
No 173
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-38 Score=347.81 Aligned_cols=258 Identities=26% Similarity=0.435 Sum_probs=200.8
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcE----EEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCcee
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTK----IAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSER 654 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~----vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 654 (933)
.++|++.+.||+|+||.||+|.. .+++. ||+|.+.... .....+++.+|+.++++++||||+++++++..+. .
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~ 91 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT-SPKANKEILDEAYVMASVDNPHVCRLLGICLTST-V 91 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCS-SCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-E
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeecccc-CHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-c
Confidence 36799999999999999999964 34543 5777776442 3455688999999999999999999999998755 7
Q ss_pred EEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccc
Q 002346 655 LLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLV 734 (933)
Q Consensus 655 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla 734 (933)
++|+||+.+|+|.+++... ...+++..++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||++
T Consensus 92 ~~v~~~~~~g~L~~~l~~~----~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kL~DfG~a 164 (327)
T 3lzb_A 92 QLITQLMPFGCLLDYVREH----KDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLA 164 (327)
T ss_dssp EEEECCCSSCBHHHHHHHT----TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCTTC-
T ss_pred eEEEEecCCCcHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHhh---CCCcCCCCCHHHEEEcCCCCEEEccCcce
Confidence 8899999999999999662 2458999999999999999999999 89999999999999999999999999999
Q ss_pred ccCCCCCc-eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCC
Q 002346 735 KNAPDGKY-SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKEN 812 (933)
Q Consensus 735 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (933)
+....... .......||+.|+|||++.+..++.++||||||+++|||++ |+.||.......... . ......
T Consensus 165 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~---~----~~~~~~ 237 (327)
T 3lzb_A 165 KLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISS---I----LEKGER 237 (327)
T ss_dssp ---------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHH---H----HHTTCC
T ss_pred eEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH---H----HHcCCC
Confidence 86543322 12233457889999999999999999999999999999999 999998754433211 1 111111
Q ss_pred CCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhh
Q 002346 813 IPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVE 864 (933)
Q Consensus 813 ~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~ 864 (933)
.+ ..+. ....+.+++.+||+.||++||++.|+++.|+.+..
T Consensus 238 ~~--~~~~---------~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 278 (327)
T 3lzb_A 238 LP--QPPI---------CTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp CC--CCTT---------BCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHT
T ss_pred CC--CCcc---------CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence 11 1111 11357799999999999999999999999988763
No 174
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=339.33 Aligned_cols=251 Identities=24% Similarity=0.434 Sum_probs=184.3
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC-chhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG-NKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
.++|++.+.||+|+||.||+|.. .+|+.||||++...... ....+++.+|+.++++++||||+++++++.+....++|
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 46799999999999999999965 57999999998754321 22357899999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+++++|.+++... ..++++.+++.++.|+++||+|||+ .+|+||||||+||+++.++.+||+|||++...
T Consensus 90 ~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~ 162 (278)
T 3cok_A 90 LEMCHNGEMNRYLKNR----VKPFSENEARHFMHQIITGMLYLHS---HGILHRDLTLSNLLLTRNMNIKIADFGLATQL 162 (278)
T ss_dssp EECCTTEEHHHHHHTC----SSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSSCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EecCCCCcHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEEeecceeec
Confidence 9999999999999652 2568999999999999999999999 89999999999999999999999999999866
Q ss_pred CCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
..... ......||+.|+|||.+.+..++.++||||||+++|||++|+.||........ .......... .
T Consensus 163 ~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~------~~~~~~~~~~----~ 231 (278)
T 3cok_A 163 KMPHE-KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT------LNKVVLADYE----M 231 (278)
T ss_dssp C-----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-----------CCSSCCC----C
T ss_pred cCCCC-cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH------HHHHhhcccC----C
Confidence 53221 12335789999999999988899999999999999999999999976533211 0011100000 1
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
... ....+.+++.+|++.||++||+++++++
T Consensus 232 ~~~---------~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 232 PSF---------LSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp CTT---------SCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ccc---------cCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 111 1235779999999999999999999986
No 175
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.9e-39 Score=351.02 Aligned_cols=270 Identities=23% Similarity=0.355 Sum_probs=199.2
Q ss_pred cCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEe
Q 002346 581 DNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 659 (933)
++|++.+.||+|+||.||+|... +++.||||++..... ......+.+|+.++++++||||+++++++..+...++|||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 80 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFE 80 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC-------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccc-cccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEec
Confidence 57999999999999999999654 789999999875431 1112245679999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCC
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPD 739 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~ 739 (933)
|++ |+|.+++... ...+++.+++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||+++....
T Consensus 81 ~~~-~~l~~~~~~~----~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~ 152 (324)
T 3mtl_A 81 YLD-KDLKQYLDDC----GNIINMHNVKLFLFQLLRGLAYCHR---QKVLHRDLKPQNLLINERGELKLADFGLARAKSI 152 (324)
T ss_dssp CCS-EEHHHHHHHT----TTCCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCCGGGEEECTTCCEEECSSSEEECC--
T ss_pred ccc-cCHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCcCHHHEEECCCCCEEEccCcccccccC
Confidence 996 6999988652 2468999999999999999999999 8999999999999999999999999999986543
Q ss_pred CCceeecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhc--cCCCCcc
Q 002346 740 GKYSVETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLIS--KENIPKA 816 (933)
Q Consensus 740 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 816 (933)
... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+. ...+...... ...++..
T Consensus 153 ~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~---~~~i~~~~~~~~~~~~~~~ 228 (324)
T 3mtl_A 153 PTK-TYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQ---LHFIFRILGTPTEETWPGI 228 (324)
T ss_dssp -----------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH---HHHHHHHHCCCCTTTSTTG
T ss_pred Ccc-ccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHHhCCCChHhchhh
Confidence 322 2234578999999999876 5689999999999999999999999987543322 2222221110 0111111
Q ss_pred cC---------CCCCCC---hhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCCC
Q 002346 817 ID---------PNLNLD---EETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKPA 869 (933)
Q Consensus 817 ~d---------~~l~~~---~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~~ 869 (933)
.. +..... .........+.+++.+||+.||++|||++|+++ ++|...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~------hp~f~~ 287 (324)
T 3mtl_A 229 LSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK------HPFFLS 287 (324)
T ss_dssp GGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT------SGGGGG
T ss_pred hcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc------Chhhhh
Confidence 00 000000 000011245779999999999999999999986 677653
No 176
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=7.9e-38 Score=339.50 Aligned_cols=262 Identities=27% Similarity=0.407 Sum_probs=206.9
Q ss_pred CCccCCccccCCCeEEEEEEeC-C---CcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCcee-EE
Q 002346 582 NFSEANILGRGGFGVVYGGELP-D---GTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSER-LL 656 (933)
Q Consensus 582 ~~~~~~~lg~G~~g~Vy~~~~~-~---~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-~l 656 (933)
.|...+.||+|+||.||+|... + +..||+|++.... .....+.+.+|+.++++++||||+++++++.+.+.. ++
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 100 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRIT-EMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHV 100 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCC-SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccc-cHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEE
Confidence 4566789999999999999642 2 2379999987643 345567899999999999999999999999876655 89
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKN 736 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~ 736 (933)
||||+.+|+|.+++.. ....+++.+++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||+++.
T Consensus 101 v~e~~~~~~L~~~~~~----~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~ 173 (298)
T 3pls_A 101 LLPYMCHGDLLQFIRS----PQRNPTVKDLISFGLQVARGMEYLAE---QKFVHRDLAARNCMLDESFTVKVADFGLARD 173 (298)
T ss_dssp EECCCTTCBHHHHHHC----TTCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECCTTSSCT
T ss_pred EEecccCCCHHHHHhc----cccCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCcEEeCcCCCccc
Confidence 9999999999999965 12568999999999999999999999 8999999999999999999999999999986
Q ss_pred CCCCCc---eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCC
Q 002346 737 APDGKY---SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENI 813 (933)
Q Consensus 737 ~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (933)
...... .......|++.|+|||.+.+..++.++||||||+++|||++|+.|+....... ....... . ....
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~--~~~~~~~---~-~~~~ 247 (298)
T 3pls_A 174 ILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPF--DLTHFLA---Q-GRRL 247 (298)
T ss_dssp TTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGG--GHHHHHH---T-TCCC
T ss_pred ccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHH--HHHHHhh---c-CCCC
Confidence 544321 12234568899999999999999999999999999999999666654432221 1111111 1 1111
Q ss_pred CcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 814 PKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 814 ~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
+ ..... ...+.+++.+|++.+|++||++.++++.|++++..+..
T Consensus 248 ~--~~~~~---------~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~ 291 (298)
T 3pls_A 248 P--QPEYC---------PDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLG 291 (298)
T ss_dssp C--CCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCS
T ss_pred C--CCccc---------hHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhc
Confidence 0 11111 13577999999999999999999999999999877654
No 177
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=384.54 Aligned_cols=394 Identities=19% Similarity=0.149 Sum_probs=270.2
Q ss_pred ccccceEeCCCCCEEEEEecCCCCccccCccccCCcccceeecccccccccC-C-CccCcCcCceeccccccccCCCCCc
Q 002346 55 CEWTGINCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAI-P-SLANATSLQDIYLDNNNFTSVPTGC 132 (933)
Q Consensus 55 C~w~gv~c~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-p-~~~~l~~L~~L~Ls~N~l~~~~~~~ 132 (933)
|.|..|.+ -..+++.|+|++|.+++..+..|.++++|++|+|++|.+.+.+ | .|.++++|++|+|++|.|+++.+..
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 45777776 5578999999999999988999999999999999999766655 5 7999999999999999999998889
Q ss_pred ccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCC-hhhcCCCCCCEEEccCCcCCCCCCccccc--
Q 002346 133 FDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIP-DFFDSFSNLQNLRLSYNNFTGSLPASFAK-- 209 (933)
Q Consensus 133 ~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-- 209 (933)
|+++++|++|+|++|.+.+..+-...+.++++|++|+|++|.+.+..+ ..|+++++|++|+|++|++++..|..+..
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 999999999999999998732222348999999999999999988765 67899999999999999998777766643
Q ss_pred -cc------------------------------cchhhcccccCCccc--------------------------------
Q 002346 210 -SD------------------------------IQNLWMNDQQLGLSG-------------------------------- 226 (933)
Q Consensus 210 -~~------------------------------l~~l~l~~n~~~~~~-------------------------------- 226 (933)
.+ |+.|++++|.+....
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 22 444555544322100
Q ss_pred -----------------------------ccccccCCccCcEEEecCCccCCCCC-CCCCCCCCCEEEccCCcccccCcc
Q 002346 227 -----------------------------TLDVLSGMTQLRQVWLHKNQFTGPIP-DLSKCESLFDLSLRDNQLTGVVPA 276 (933)
Q Consensus 227 -----------------------------~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~L~~L~L~~N~l~~~~p~ 276 (933)
....+..+++|+.|+|++|++++..+ .+..+++|+.|+|++|++++..|.
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred CCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence 01123445555566666666555544 355566666666666666655566
Q ss_pred cccCCCCCCEEEccCccCccCCCCC---CCCccEEeccCCcCCCCCCCCC-------------CCCCc------------
Q 002346 277 SVISLPALLNISLQNNKLQGPYPLF---PSKVQKVSLDHNNFCKNSSDAG-------------KPCDP------------ 328 (933)
Q Consensus 277 ~l~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~l~~n~~~~~~~~~~-------------~~~~~------------ 328 (933)
.|..+++|+.|+|++|.+++..+.. ..+|+.|+|++|.+.+...-.. .|...
T Consensus 333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENR 412 (844)
T ss_dssp SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCC
T ss_pred HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCc
Confidence 6666666666666666665554432 3356666666666554321000 00000
Q ss_pred -----------hhhhhHhh--h----------cccCCCcccc-CCCCCCCCC-----CCCCccccCCCceeEEEccCccc
Q 002346 329 -----------QVTTLLQI--A----------GDMGYPAILS-DSWEGNNAC-----DGWPFVTCSQGRIITINLANKLL 379 (933)
Q Consensus 329 -----------~~~~~~~~--~----------~~~~~~~~l~-~~~~~~~~~-----~~~p~~~~~l~~L~~L~Ls~N~l 379 (933)
....+..+ . ........++ +++.+|... +..|..+..+++|+.|+|++|++
T Consensus 413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 492 (844)
T 3j0a_A 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492 (844)
T ss_dssp CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHH
T ss_pred cccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcc
Confidence 00000000 0 0000001111 112222222 23345567788999999999999
Q ss_pred cCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccCCCCCCCcccccCCCCCCcCC
Q 002346 380 AGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKVPDFGSNVKFTVSPGNPFIGT 451 (933)
Q Consensus 380 ~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~n~~~~~ 451 (933)
++.+|..|.++++|+.|+|++|+|++..|..+. ++|+.|||++|+|++.+|.....+....+.+|||.|.
T Consensus 493 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 493 NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICE 562 (844)
T ss_dssp TTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCS
T ss_pred cccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCEEEecCCCcccc
Confidence 988888899999999999999999977777666 7899999999999999998766666667789999984
No 178
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=2.2e-38 Score=342.02 Aligned_cols=249 Identities=24% Similarity=0.360 Sum_probs=202.4
Q ss_pred HhcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCceeEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGSERLL 656 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 656 (933)
..++|++.+.||+|+||.||+|... +++.||+|++...........++.+|+..+..+ +||||+++++++.+++..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l 88 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI 88 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence 4578999999999999999999664 799999999987655555677899999999999 99999999999999999999
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCC-------------
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDD------------- 723 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~------------- 723 (933)
||||+++++|.+++...... ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.+
T Consensus 89 v~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~ 164 (289)
T 1x8b_A 89 QNEYCNGGSLADAISENYRI-MSYFKEAELKDLLLQVGRGLRYIHS---MSLVHMDIKPSNIFISRTSIPNAASEEGDED 164 (289)
T ss_dssp EEECCTTCBHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEC---------------
T ss_pred EEEecCCCcHHHHHHhhccc-ccCCCHHHHHHHHHHHHHHHHHHHh---CCEeecCCCHHHEEEcCCCCCcccccccccc
Confidence 99999999999999763221 2568999999999999999999999 899999999999999844
Q ss_pred ------CcEEEecccccccCCCCCceeecccccccCcccccccCCC-CCCCccchHhHHHHHHHHHcCCCCCCCCCCchh
Q 002346 724 ------MRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATG-RVTTKIDVYAFGVVLMETITGRKALDDTMPDDR 796 (933)
Q Consensus 724 ------~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~ 796 (933)
..+||+|||.+....... ...||+.|+|||++.+. .++.++||||||+++|||++|++++.... .
T Consensus 165 ~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~---~ 236 (289)
T 1x8b_A 165 DWASNKVMFKIGDLGHVTRISSPQ-----VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGD---Q 236 (289)
T ss_dssp -----CCCEEECCCTTCEETTCSC-----CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSH---H
T ss_pred cccCCceEEEEcccccccccCCcc-----ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchh---H
Confidence 479999999998765432 23589999999999765 56789999999999999999997764321 1
Q ss_pred hHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 797 AHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
. .... ....+. +...+. ..+.+++.+||+.||++||++.|+++
T Consensus 237 --~----~~~~--~~~~~~-~~~~~~---------~~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 237 --W----HEIR--QGRLPR-IPQVLS---------QEFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp --H----HHHH--TTCCCC-CSSCCC---------HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred --H----HHHH--cCCCCC-CCcccC---------HHHHHHHHHHhCCCcccCCCHHHHhh
Confidence 1 1111 111111 111111 35779999999999999999999986
No 179
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=3.4e-38 Score=375.31 Aligned_cols=252 Identities=24% Similarity=0.352 Sum_probs=201.6
Q ss_pred CccccCCCeEEEEEEe---CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEeecCC
Q 002346 587 NILGRGGFGVVYGGEL---PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYEYMPR 663 (933)
Q Consensus 587 ~~lg~G~~g~Vy~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~ 663 (933)
+.||+|+||.||+|.+ ..++.||||+++.........++|.+|++++++++|||||++++++.. +..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 4799999999999954 346789999998765555667899999999999999999999999864 567899999999
Q ss_pred CChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCCCCc-
Q 002346 664 GTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPDGKY- 742 (933)
Q Consensus 664 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~~~~- 742 (933)
|+|.+++.. ...+++.+++.|+.||+.||+|||+ ++||||||||+|||++.++.+||+|||+++.......
T Consensus 454 g~L~~~l~~-----~~~l~~~~~~~i~~qi~~~L~yLH~---~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~ 525 (635)
T 4fl3_A 454 GPLNKYLQQ-----NRHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 525 (635)
T ss_dssp EEHHHHHHH-----CTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC----
T ss_pred CCHHHHHhh-----CCCCCHHHHHHHHHHHHHHHHHHHH---CCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccc
Confidence 999999965 2468999999999999999999999 8999999999999999999999999999987654332
Q ss_pred -eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccCCC
Q 002346 743 -SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENIPKAIDPN 820 (933)
Q Consensus 743 -~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 820 (933)
.......||+.|+|||++.+..++.++|||||||++|||++ |+.||......+. .. .... ... ......
T Consensus 526 ~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~---~~---~i~~-~~~--~~~p~~ 596 (635)
T 4fl3_A 526 YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEV---TA---MLEK-GER--MGCPAG 596 (635)
T ss_dssp ---------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHH---HH---HHHT-TCC--CCCCTT
T ss_pred cccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH---HH---HHHc-CCC--CCCCCC
Confidence 22233457889999999998899999999999999999998 9999976543221 11 1111 111 111111
Q ss_pred CCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 821 LNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 821 l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
. ..++.+++.+||+.||++||+++++++.|+++...
T Consensus 597 ~---------~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~ 632 (635)
T 4fl3_A 597 C---------PREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD 632 (635)
T ss_dssp C---------CHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred C---------CHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence 1 24678999999999999999999999999887543
No 180
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=5.2e-38 Score=364.71 Aligned_cols=253 Identities=25% Similarity=0.352 Sum_probs=205.2
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
+.++|++.+.||+|+||.||+|.. .+++.||||++............+.+|+.++++++||||+++++++.+....++|
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 457899999999999999999965 4789999999976544445567899999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEec---CCCcEEEeccccc
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIG---DDMRAKVADFGLV 734 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~---~~~~~kl~DfGla 734 (933)
|||+++|+|.+++... ..+++.+++.++.|+++||+|||+ ++|+||||||+||+++ .++.+||+|||++
T Consensus 100 ~e~~~~~~L~~~~~~~-----~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a 171 (486)
T 3mwu_A 100 GELYTGGELFDEIIKR-----KRFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLS 171 (486)
T ss_dssp ECCCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEESSSSTTCCEEECSCSCT
T ss_pred EEcCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEEEECCcC
Confidence 9999999999998652 468999999999999999999999 8999999999999995 4567999999999
Q ss_pred ccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCC
Q 002346 735 KNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIP 814 (933)
Q Consensus 735 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (933)
+...... ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||......+ . ...+........
T Consensus 172 ~~~~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~---~~~i~~~~~~~~ 242 (486)
T 3mwu_A 172 TCFQQNT--KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD---I---LKRVETGKYAFD 242 (486)
T ss_dssp TTBCCC------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH---H---HHHHHHTCCCSC
T ss_pred eECCCCC--ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---H---HHHHHhCCCCCC
Confidence 8665432 2234579999999999875 59999999999999999999999997653322 1 112221111111
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 815 KAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 815 ~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
.. ........+.+++.+||+.+|++|||+.|+++
T Consensus 243 ~~---------~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 243 LP---------QWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (486)
T ss_dssp SG---------GGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred Cc---------ccCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 00 00111245779999999999999999999987
No 181
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=1.2e-37 Score=347.37 Aligned_cols=261 Identities=26% Similarity=0.395 Sum_probs=209.3
Q ss_pred cHHHHHHHhcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCC------chhHHHHHHHHHHHHhc-CCCccee
Q 002346 572 SIEVLRQVTDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMG------NKGLSEFQAEIAVLTKV-RHRHLVA 643 (933)
Q Consensus 572 ~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~~~E~~~l~~l-~h~niv~ 643 (933)
.......+.++|++.+.||+|+||.||+|... +|+.||||++...... ....+.+.+|+.+++++ +||||++
T Consensus 85 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~ 164 (365)
T 2y7j_A 85 DWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIIT 164 (365)
T ss_dssp HHHHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCC
T ss_pred cchhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeE
Confidence 34555667789999999999999999999764 7999999998765321 12245788999999999 7999999
Q ss_pred EEeEeeeCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCC
Q 002346 644 LLGYCINGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDD 723 (933)
Q Consensus 644 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~ 723 (933)
+++++......++||||+++++|.+++.. ...+++..+..++.|++.||+|||+ .+|+||||||+||+++.+
T Consensus 165 ~~~~~~~~~~~~lv~e~~~g~~L~~~l~~-----~~~l~~~~~~~i~~qi~~~L~~LH~---~gi~H~Dlkp~NIl~~~~ 236 (365)
T 2y7j_A 165 LIDSYESSSFMFLVFDLMRKGELFDYLTE-----KVALSEKETRSIMRSLLEAVSFLHA---NNIVHRDLKPENILLDDN 236 (365)
T ss_dssp EEEEEEBSSEEEEEECCCTTCBHHHHHHH-----HSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTT
T ss_pred EEEEEeeCCEEEEEEEeCCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCC
Confidence 99999999999999999999999999965 2468999999999999999999999 899999999999999999
Q ss_pred CcEEEecccccccCCCCCceeecccccccCcccccccCC------CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhh
Q 002346 724 MRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAAT------GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRA 797 (933)
Q Consensus 724 ~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~ 797 (933)
+.+||+|||++........ .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.......
T Consensus 237 ~~ikl~DfG~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~-- 312 (365)
T 2y7j_A 237 MQIRLSDFGFSCHLEPGEK--LRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQIL-- 312 (365)
T ss_dssp CCEEECCCTTCEECCTTCC--BCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH--
T ss_pred CCEEEEecCcccccCCCcc--cccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHH--
Confidence 9999999999987654332 234679999999998853 358899999999999999999999997643211
Q ss_pred HHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 798 HLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
.. .............. .......+.+++.+|++.||++||++.|+++
T Consensus 313 -~~---~~i~~~~~~~~~~~---------~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 313 -ML---RMIMEGQYQFSSPE---------WDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp -HH---HHHHHTCCCCCHHH---------HSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred -HH---HHHHhCCCCCCCcc---------cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 11 11111111111000 0011245789999999999999999999987
No 182
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=6.2e-38 Score=372.29 Aligned_cols=260 Identities=22% Similarity=0.345 Sum_probs=204.4
Q ss_pred CCccCC-ccccCCCeEEEEEEeC---CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 582 NFSEAN-ILGRGGFGVVYGGELP---DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 582 ~~~~~~-~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
++.+.+ .||+|+||.||+|... ++..||||+++... .....++|.+|++++++++|||||++++++.. +..++|
T Consensus 336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~-~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv 413 (613)
T 2ozo_A 336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT-EKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLV 413 (613)
T ss_dssp SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCC-SSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEE
T ss_pred ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCC-ChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEE
Confidence 344444 7999999999999653 46689999998653 34456889999999999999999999999976 568999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+++|+|.+++... ...+++.+++.++.||++||+|||+ ++|+||||||+|||++.++.+||+|||+++..
T Consensus 414 ~E~~~~g~L~~~l~~~----~~~l~~~~~~~i~~qi~~~L~~LH~---~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~ 486 (613)
T 2ozo_A 414 MEMAGGGPLHKFLVGK----REEIPVSNVAELLHQVSMGMKYLEE---KNFVHRNLAARNVLLVNRHYAKISDFGLSKAL 486 (613)
T ss_dssp EECCTTCBHHHHHTTC----TTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCSTTTTC
T ss_pred EEeCCCCcHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHHH---CCEEcCcCCHHHEEEcCCCcEEEeeccCcccc
Confidence 9999999999999542 3569999999999999999999999 89999999999999999999999999999876
Q ss_pred CCCCcee--ecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCCC
Q 002346 738 PDGKYSV--ETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENIP 814 (933)
Q Consensus 738 ~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (933)
....... .....+++.|+|||++.+..++.++|||||||++|||++ |+.||......+. .. .+.. ...
T Consensus 487 ~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~---~~---~i~~-~~~-- 557 (613)
T 2ozo_A 487 GADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEV---MA---FIEQ-GKR-- 557 (613)
T ss_dssp C--------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHH---HH---HHHT-TCC--
T ss_pred cCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH---HH---HHHc-CCC--
Confidence 5433211 122346689999999998999999999999999999998 9999987544322 11 1111 111
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 815 KAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 815 ~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
....+.. ...+.+++.+||+.+|++||++.++++.|+.+......
T Consensus 558 ~~~p~~~---------~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~ 602 (613)
T 2ozo_A 558 MECPPEC---------PPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS 602 (613)
T ss_dssp CCCCTTC---------CHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCcC---------CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhcc
Confidence 1111111 24678999999999999999999999999987655543
No 183
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=6.9e-38 Score=340.97 Aligned_cols=251 Identities=25% Similarity=0.405 Sum_probs=203.3
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
+.++|.+.+.||+|+||.||++.. .+|+.||+|++.... ....+.+.+|+.++++++||||+++++++.+....++|
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (304)
T 2jam_A 7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSP--AFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLV 84 (304)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC--------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEeccc--ccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEE
Confidence 457899999999999999999965 479999999997653 22346789999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEe---cCCCcEEEeccccc
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILI---GDDMRAKVADFGLV 734 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill---~~~~~~kl~DfGla 734 (933)
|||+++++|.+++... ..+++.+++.++.|++.||+|||+ .+|+||||||+||++ +.++.+||+|||++
T Consensus 85 ~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~ 156 (304)
T 2jam_A 85 MQLVSGGELFDRILER-----GVYTEKDASLVIQQVLSAVKYLHE---NGIVHRDLKPENLLYLTPEENSKIMITDFGLS 156 (304)
T ss_dssp ECCCCSCBHHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCSCCGGGCEESSSSTTCCEEBCSCSTT
T ss_pred EEcCCCccHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEecCCCCCCEEEccCCcc
Confidence 9999999999998652 458999999999999999999999 899999999999999 78899999999998
Q ss_pred ccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCC
Q 002346 735 KNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIP 814 (933)
Q Consensus 735 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (933)
+...... .....|++.|+|||++.+..++.++||||||+++|||++|+.||....... . ...........+
T Consensus 157 ~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~---~~~i~~~~~~~~ 227 (304)
T 2jam_A 157 KMEQNGI---MSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESK---L---FEKIKEGYYEFE 227 (304)
T ss_dssp CCCCCBT---THHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHH---H---HHHHHHCCCCCC
T ss_pred eecCCCc---cccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHH---H---HHHHHcCCCCCC
Confidence 7544321 233468999999999999999999999999999999999999997653221 1 112222111111
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 815 KAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 815 ~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
....+.+ ...+.+++.+|++.||++||++.|+++
T Consensus 228 ~~~~~~~---------~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 228 SPFWDDI---------SESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp TTTTTTS---------CHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred ccccccC---------CHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1111111 245779999999999999999999986
No 184
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=3.4e-38 Score=341.65 Aligned_cols=250 Identities=23% Similarity=0.396 Sum_probs=206.9
Q ss_pred hcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccC-CchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
.++|.+.+.||+|+||.||++... +++.||+|++..... .....+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 468999999999999999999654 688999999876543 234567889999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+++++|.+++... ..+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||++...
T Consensus 94 ~e~~~~~~L~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~ 165 (294)
T 2rku_A 94 LELCRRRSLLELHKRR-----KALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDLEVKIGDFGLATKV 165 (294)
T ss_dssp EECCTTCBHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EecCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEcCCCCEEEEeccCceec
Confidence 9999999999988652 468999999999999999999999 89999999999999999999999999999866
Q ss_pred CCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
..... ......|++.|+|||++.+..++.++||||||+++|||++|+.||......+. ...........+..
T Consensus 166 ~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~------~~~~~~~~~~~~~~- 237 (294)
T 2rku_A 166 EYDGE-RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET------YLRIKKNEYSIPKH- 237 (294)
T ss_dssp CSTTC-CBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH------HHHHHTTCCCCCTT-
T ss_pred ccCcc-ccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH------HHHHhhccCCCccc-
Confidence 53322 22345799999999999988899999999999999999999999976532211 11112212112111
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
. ...+.+++.+|++.||++||+++|+++
T Consensus 238 ---~---------~~~~~~li~~~l~~~p~~Rps~~~ll~ 265 (294)
T 2rku_A 238 ---I---------NPVAASLIQKMLQTDPTARPTINELLN 265 (294)
T ss_dssp ---S---------CHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ---c---------CHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 1 135779999999999999999999986
No 185
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=7.3e-38 Score=340.64 Aligned_cols=249 Identities=25% Similarity=0.455 Sum_probs=207.0
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
.+.|++.+.||+|+||.||+|.. .+++.||||++.... .....+.+.+|+.+++.++||||+++++++..+...++||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 99 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEE-AEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIM 99 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTT-CSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccc-cHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEE
Confidence 36789999999999999999954 578999999997654 2345678999999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+++++|.+++.. .++++.+++.++.|+++||+|||+ .+|+||||||+||+++.++.+||+|||++....
T Consensus 100 e~~~~~~L~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~ 170 (303)
T 3a7i_A 100 EYLGGGSALDLLEP------GPLDETQIATILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT 170 (303)
T ss_dssp ECCTTEEHHHHHTT------SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECB
T ss_pred EeCCCCcHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChheEEECCCCCEEEeecccceecC
Confidence 99999999999854 468999999999999999999999 899999999999999999999999999998665
Q ss_pred CCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccC
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAID 818 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 818 (933)
.... ......|++.|+|||++.+..++.++||||||+++|||++|+.||........ ...+ .. .. +..+.
T Consensus 171 ~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~---~~~~---~~--~~-~~~~~ 240 (303)
T 3a7i_A 171 DTQI-KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKV---LFLI---PK--NN-PPTLE 240 (303)
T ss_dssp TTBC-CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH---HHHH---HH--SC-CCCCC
T ss_pred cccc-ccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHH---HHHh---hc--CC-CCCCc
Confidence 4322 22345799999999999999999999999999999999999999976533221 1111 11 11 11111
Q ss_pred CCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 819 PNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 819 ~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
.... ..+.+++.+||+.+|++||++.++++
T Consensus 241 ~~~~---------~~l~~li~~~l~~dp~~Rps~~~ll~ 270 (303)
T 3a7i_A 241 GNYS---------KPLKEFVEACLNKEPSFRPTAKELLK 270 (303)
T ss_dssp SSCC---------HHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred cccC---------HHHHHHHHHHcCCChhhCcCHHHHhh
Confidence 1111 35779999999999999999999986
No 186
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=348.19 Aligned_cols=263 Identities=27% Similarity=0.394 Sum_probs=204.7
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeee----Ccee
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCIN----GSER 654 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~ 654 (933)
.++|++.+.||+|+||.||++.. .+++.||||++... .....+.+.+|+.+++.++||||+++++++.. ....
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 105 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH--EQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEA 105 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES--SHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC--CHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCcee
Confidence 47899999999999999999965 67999999998654 34556789999999999999999999999873 3477
Q ss_pred EEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccc
Q 002346 655 LLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLV 734 (933)
Q Consensus 655 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla 734 (933)
++||||+++|+|.+++..... ....+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||++
T Consensus 106 ~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~dfg~~ 181 (317)
T 2buj_A 106 WLLLPFFKRGTLWNEIERLKD-KGNFLTEDQILWLLLGICRGLEAIHA---KGYAHRDLKPTNILLGDEGQPVLMDLGSM 181 (317)
T ss_dssp EEEEECCTTCBHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred EEEEEeCCCCcHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEcCCCCEEEEecCcc
Confidence 899999999999999976433 23679999999999999999999999 89999999999999999999999999998
Q ss_pred ccCCCCCce--------eecccccccCcccccccCCCC---CCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHH
Q 002346 735 KNAPDGKYS--------VETRLAGTFGYLAPEYAATGR---VTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWF 803 (933)
Q Consensus 735 ~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~ 803 (933)
......... ......||+.|+|||++.... ++.++||||||+++|||++|+.||........ ....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~-~~~~-- 258 (317)
T 2buj_A 182 NQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGD-SVAL-- 258 (317)
T ss_dssp EESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTS-CHHH--
T ss_pred hhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccc-hhhH--
Confidence 755421110 012245799999999987554 68999999999999999999999953211110 0111
Q ss_pred HHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhh
Q 002346 804 RRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVE 864 (933)
Q Consensus 804 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~ 864 (933)
........+. .+.. ...+.+++.+||+.||++||++.++++.|+.+..
T Consensus 259 --~~~~~~~~~~--~~~~---------~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~ 306 (317)
T 2buj_A 259 --AVQNQLSIPQ--SPRH---------SSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQP 306 (317)
T ss_dssp --HHHCC--CCC--CTTS---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCC
T ss_pred --HhhccCCCCc--cccC---------CHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCC
Confidence 1111111110 1111 1357899999999999999999999999987643
No 187
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=1e-37 Score=334.57 Aligned_cols=254 Identities=22% Similarity=0.336 Sum_probs=205.7
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
..++|++.+.||+|+||.||+|.. .+++.||||++..... ....+.+.+|+.+++.++||||+++++++.++...++|
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 83 (276)
T 2yex_A 5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA-VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF 83 (276)
T ss_dssp HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGC-TTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccc-hhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEE
Confidence 347899999999999999999965 4789999999876532 34457899999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+++++|.+++.. ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||++...
T Consensus 84 ~e~~~~~~L~~~l~~-----~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~ 155 (276)
T 2yex_A 84 LEYCSGGELFDRIEP-----DIGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF 155 (276)
T ss_dssp EECCTTEEGGGGSBT-----TTBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEecCCCcHHHHHhh-----ccCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCChHHEEEccCCCEEEeeCCCcccc
Confidence 999999999999854 2468999999999999999999999 89999999999999999999999999998765
Q ss_pred CCCCc-eeecccccccCcccccccCCCCC-CCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCc
Q 002346 738 PDGKY-SVETRLAGTFGYLAPEYAATGRV-TTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPK 815 (933)
Q Consensus 738 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (933)
..... .......|++.|+|||.+.+..+ +.++||||||+++|||++|+.||........ ....+. .......
T Consensus 156 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~~~~~----~~~~~~~- 229 (276)
T 2yex_A 156 RYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQ-EYSDWK----EKKTYLN- 229 (276)
T ss_dssp EETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSH-HHHHHH----TTCTTST-
T ss_pred CCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHH-HHHHhh----hcccccC-
Confidence 43221 12234579999999999987665 7899999999999999999999986543221 111111 1111110
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 816 AIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 816 ~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
+ .......+.+++.+|++.||++||+++|+++
T Consensus 230 ---~-------~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 230 ---P-------WKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp ---T-------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ---c-------hhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 0 0011235779999999999999999999976
No 188
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=4.1e-38 Score=351.47 Aligned_cols=202 Identities=26% Similarity=0.408 Sum_probs=177.0
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
.++|++.+.||+|+||.||+|.. .+++.||+|++.... .....+.+.+|+.++++++||||+++++++..++..++||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 110 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI-KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM 110 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC-CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc-CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEE
Confidence 46899999999999999999965 478999999987653 3455678999999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+++++|.+++... ..+++..+..++.|++.||+|||+. ++|+||||||+||+++.++.+||+|||++....
T Consensus 111 e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 183 (360)
T 3eqc_A 111 EHMDGGSLDQVLKKA-----GRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI 183 (360)
T ss_dssp CCCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCHHHH
T ss_pred ECCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHHh--CCEEcCCccHHHEEECCCCCEEEEECCCCcccc
Confidence 999999999999662 4589999999999999999999981 389999999999999999999999999986442
Q ss_pred CCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCC
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTM 792 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~ 792 (933)
.. ......||+.|+|||++.+..++.++||||||+++|||++|+.||....
T Consensus 184 ~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 234 (360)
T 3eqc_A 184 DS---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPD 234 (360)
T ss_dssp HH---C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCC
T ss_pred cc---cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 21 1234579999999999999999999999999999999999999998654
No 189
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=1e-37 Score=346.99 Aligned_cols=268 Identities=23% Similarity=0.328 Sum_probs=206.2
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeee--------C
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCIN--------G 651 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--------~ 651 (933)
++|++.+.||+|+||.||+|.. .+|+.||||++............+.+|+.+++.++||||+++++++.. .
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 96 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK 96 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence 6899999999999999999965 579999999997765555555688899999999999999999999876 3
Q ss_pred ceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecc
Q 002346 652 SERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADF 731 (933)
Q Consensus 652 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~Df 731 (933)
+..++||||++ ++|.+.+... ...+++.+++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+||
T Consensus 97 ~~~~lv~e~~~-~~l~~~l~~~----~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~kl~Df 168 (351)
T 3mi9_A 97 GSIYLVFDFCE-HDLAGLLSNV----LVKFTLSEIKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGVLKLADF 168 (351)
T ss_dssp CEEEEEEECCS-EEHHHHHHCT----TSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCC
T ss_pred ceEEEEEeccC-CCHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCHHHEEEcCCCCEEEccc
Confidence 46899999997 4887777542 2458999999999999999999999 89999999999999999999999999
Q ss_pred cccccCCCCC---ceeecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHh
Q 002346 732 GLVKNAPDGK---YSVETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVL 807 (933)
Q Consensus 732 Gla~~~~~~~---~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~ 807 (933)
|+++...... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||........... +....
T Consensus 169 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~---i~~~~ 245 (351)
T 3mi9_A 169 GLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLAL---ISQLC 245 (351)
T ss_dssp TTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH---HHHHH
T ss_pred hhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHH---HHHHh
Confidence 9998654322 122234578999999998875 4589999999999999999999999987543322211 11111
Q ss_pred hccCCCCcccCCCC-------------CCChhhHHH------HHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 808 ISKENIPKAIDPNL-------------NLDEETIES------IYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 808 ~~~~~~~~~~d~~l-------------~~~~~~~~~------~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
...+....+.. .......+. ...+.+++.+||+.||++||+++|+++ ++|..
T Consensus 246 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~------hp~f~ 316 (351)
T 3mi9_A 246 ---GSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN------HDFFW 316 (351)
T ss_dssp ---CCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT------SGGGG
T ss_pred ---CCCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC------CCCcC
Confidence 11111000000 000000111 234779999999999999999999987 67764
No 190
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=8.7e-38 Score=343.67 Aligned_cols=267 Identities=25% Similarity=0.424 Sum_probs=210.1
Q ss_pred hcCCccCCccccCCCeEEEEEEe-----CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCc--
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-----PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGS-- 652 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-- 652 (933)
.++|++.+.||+|+||.||++.. .+++.||||++... .....+.+.+|+.++++++||||+++++++...+
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 117 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS--TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR 117 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSC--CSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCC
Confidence 46789999999999999999973 46899999999764 3455678999999999999999999999987644
Q ss_pred eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccc
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFG 732 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfG 732 (933)
..++||||+++++|.+++... ...+++.+++.++.|+++||+|||+ .+|+||||||+||+++.++.+||+|||
T Consensus 118 ~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~~~~~~kL~Dfg 190 (326)
T 2w1i_A 118 NLKLIMEYLPYGSLRDYLQKH----KERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFG 190 (326)
T ss_dssp CCEEEECCCTTCBHHHHHHHS----TTSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCT
T ss_pred ceEEEEECCCCCCHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCCCcceEEEcCCCcEEEecCc
Confidence 679999999999999999662 2458999999999999999999999 899999999999999999999999999
Q ss_pred ccccCCCCCcee--ecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCc---------hhhHHHH
Q 002346 733 LVKNAPDGKYSV--ETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPD---------DRAHLVT 801 (933)
Q Consensus 733 la~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~---------~~~~~~~ 801 (933)
+++......... .....++..|+|||.+.+..++.++||||||+++|||+||+.|+...... .......
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (326)
T 2w1i_A 191 LTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVF 270 (326)
T ss_dssp TCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHH
T ss_pred chhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHH
Confidence 998765443221 23345778899999998888999999999999999999999988642100 0001111
Q ss_pred HHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhc
Q 002346 802 WFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQW 866 (933)
Q Consensus 802 ~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~ 866 (933)
............+ .... ....+.+++.+||+.+|++||++.|+++.|+.+.+++
T Consensus 271 ~~~~~~~~~~~~~--~~~~---------~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l 324 (326)
T 2w1i_A 271 HLIELLKNNGRLP--RPDG---------CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQM 324 (326)
T ss_dssp HHHHHHHTTCCCC--CCTT---------CCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCC--CCCc---------ccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence 1111111111111 1111 1245789999999999999999999999999887653
No 191
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=4.1e-38 Score=338.02 Aligned_cols=253 Identities=31% Similarity=0.452 Sum_probs=199.7
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeC-ceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCING-SERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-~~~~lv~ 658 (933)
.++|++.+.||+|+||.||+|.. +|+.||||++.... ..+.+.+|+.++++++||||+++++++.+. +..++||
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~ 94 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVT 94 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC------HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEE
T ss_pred hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh----HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEE
Confidence 46899999999999999999987 58999999987542 356899999999999999999999997654 4789999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+++++|.+++.... ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||++....
T Consensus 95 e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~ 168 (278)
T 1byg_A 95 EYMAKGSLVDYLRSRG---RSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS 168 (278)
T ss_dssp CCCTTEEHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC-----
T ss_pred ecCCCCCHHHHHHhcc---cccCCHHHHHHHHHHHHHHHHHHHh---CCccccCCCcceEEEeCCCcEEEeecccccccc
Confidence 9999999999996521 1347899999999999999999999 899999999999999999999999999987554
Q ss_pred CCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
... ....+++.|+|||.+.+..++.++||||||+++|||++ |+.||......+. .. ... .. .....
T Consensus 169 ~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~---~~---~~~--~~-~~~~~ 235 (278)
T 1byg_A 169 STQ----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV---VP---RVE--KG-YKMDA 235 (278)
T ss_dssp -----------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGH---HH---HHT--TT-CCCCC
T ss_pred ccc----cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHH---HH---HHh--cC-CCCCC
Confidence 322 22367889999999988899999999999999999998 9999976543221 11 111 11 11111
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
.... ...+.+++.+|++.||++||++.++++.|+.+...
T Consensus 236 ~~~~---------~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~ 274 (278)
T 1byg_A 236 PDGC---------PPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH 274 (278)
T ss_dssp CTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred cccC---------CHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence 1111 24577999999999999999999999999887643
No 192
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=5.5e-38 Score=345.46 Aligned_cols=263 Identities=29% Similarity=0.478 Sum_probs=206.1
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEE--EEEEeccccCCchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCceeEE
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKI--AVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGSERLL 656 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~v--avK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 656 (933)
++|++.+.||+|+||.||+|.. .++..+ |+|++.... .....+.+.+|+++++++ +||||+++++++.+++..++
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~-~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l 103 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA-SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL 103 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeecccc-chHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEE
Confidence 6789999999999999999965 456644 999887542 334456799999999999 89999999999999999999
Q ss_pred EEeecCCCChhhHhhhccc-----------CCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCc
Q 002346 657 VYEYMPRGTLAQHLFEWHD-----------HGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMR 725 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~ 725 (933)
||||+++++|.+++..... .....+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.
T Consensus 104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~~~~ 180 (327)
T 1fvr_A 104 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYV 180 (327)
T ss_dssp EECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECGGGC
T ss_pred EEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCccceEEEcCCCe
Confidence 9999999999999976320 123469999999999999999999999 89999999999999999999
Q ss_pred EEEecccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHH
Q 002346 726 AKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFR 804 (933)
Q Consensus 726 ~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~ 804 (933)
+||+|||+++..... .......+++.|+|||++.+..++.++||||||+++|||++ |+.||....... ...
T Consensus 181 ~kL~Dfg~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~------~~~ 252 (327)
T 1fvr_A 181 AKIADFGLSRGQEVY--VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE------LYE 252 (327)
T ss_dssp EEECCTTCEESSCEE--CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH------HHH
T ss_pred EEEcccCcCcccccc--ccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHH------HHH
Confidence 999999998743321 11223457889999999988889999999999999999998 999997653221 111
Q ss_pred HHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcC
Q 002346 805 RVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWK 867 (933)
Q Consensus 805 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~ 867 (933)
.... .... ..... ....+.+++.+|++.+|++||+++++++.|+.+.+...
T Consensus 253 ~~~~-~~~~--~~~~~---------~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~ 303 (327)
T 1fvr_A 253 KLPQ-GYRL--EKPLN---------CDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK 303 (327)
T ss_dssp HGGG-TCCC--CCCTT---------BCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred Hhhc-CCCC--CCCCC---------CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhc
Confidence 1111 1100 01111 12357899999999999999999999999998876543
No 193
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=3.7e-38 Score=347.84 Aligned_cols=250 Identities=23% Similarity=0.395 Sum_probs=207.0
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC-CchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
.++|.+.+.||+|+||.||++.. .+++.||+|++..... .....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 46899999999999999999965 4588999999876533 234567899999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+++++|.+++... ..+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||+++..
T Consensus 120 ~e~~~~~~L~~~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~ 191 (335)
T 2owb_A 120 LELCRRRSLLELHKRR-----KALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDLEVKIGDFGLATKV 191 (335)
T ss_dssp ECCCTTCBHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EecCCCCCHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCCEecCCCchhEEEcCCCCEEEeeccCceec
Confidence 9999999999998652 468999999999999999999999 89999999999999999999999999999866
Q ss_pred CCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
..... ......|++.|+|||++.+..++.++||||||+++|||++|+.||......+. ..........++..
T Consensus 192 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~------~~~~~~~~~~~~~~- 263 (335)
T 2owb_A 192 EYDGE-RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET------YLRIKKNEYSIPKH- 263 (335)
T ss_dssp CSTTC-CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH------HHHHHHTCCCCCTT-
T ss_pred ccCcc-cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHH------HHHHhcCCCCCCcc-
Confidence 53322 22345799999999999988899999999999999999999999976432211 11111112222211
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
+ ...+.+++.+||+.||++||+++|+++
T Consensus 264 ---~---------~~~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 264 ---I---------NPVAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp ---S---------CHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ---C---------CHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 1 135678999999999999999999976
No 194
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=2.9e-38 Score=340.33 Aligned_cols=251 Identities=27% Similarity=0.471 Sum_probs=205.5
Q ss_pred HHhcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeee------
Q 002346 578 QVTDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCIN------ 650 (933)
Q Consensus 578 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------ 650 (933)
....+|++.+.||+|+||.||+|... +++.||+|++.... +.+.+|++++++++||||+++++++..
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~ 81 (284)
T 2a19_B 8 RFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPE 81 (284)
T ss_dssp HHHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC--
T ss_pred hhccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcc
Confidence 45678999999999999999999764 79999999987542 357789999999999999999998854
Q ss_pred ----------CceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEe
Q 002346 651 ----------GSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILI 720 (933)
Q Consensus 651 ----------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill 720 (933)
....++||||+++++|.+++.... ...+++..++.++.|+++||+|||+ ++|+||||||+||++
T Consensus 82 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~ 155 (284)
T 2a19_B 82 TSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRR---GEKLDKVLALELFEQITKGVDYIHS---KKLINRDLKPSNIFL 155 (284)
T ss_dssp -------CCEEEEEEEEECCCCSCBHHHHHHHGG---GSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEE
T ss_pred cccccccccCcceEEEEEeccCCCCHHHHHhhcc---CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCCHHHEEE
Confidence 445789999999999999997632 2468999999999999999999999 899999999999999
Q ss_pred cCCCcEEEecccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHH
Q 002346 721 GDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLV 800 (933)
Q Consensus 721 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~ 800 (933)
+.++.+||+|||++........ .....|++.|+|||++.+..++.++||||||+++|||++|..|+... .
T Consensus 156 ~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~-----~--- 225 (284)
T 2a19_B 156 VDTKQVKIGDFGLVTSLKNDGK--RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET-----S--- 225 (284)
T ss_dssp EETTEEEECCCTTCEESSCCSC--CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH-----H---
T ss_pred cCCCCEEECcchhheecccccc--ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH-----H---
Confidence 9999999999999987654332 23457999999999999889999999999999999999999876421 1
Q ss_pred HHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 801 TWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 801 ~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
....... ...++..+ . ..+.+++.+|++.||++||++.|+++.|+.+.+.
T Consensus 226 ~~~~~~~--~~~~~~~~----~---------~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~ 275 (284)
T 2a19_B 226 KFFTDLR--DGIISDIF----D---------KKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKS 275 (284)
T ss_dssp HHHHHHH--TTCCCTTS----C---------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC-
T ss_pred HHHHHhh--cccccccC----C---------HHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhC
Confidence 1111111 11122111 1 3467999999999999999999999999876543
No 195
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=1.2e-37 Score=363.23 Aligned_cols=253 Identities=23% Similarity=0.319 Sum_probs=202.5
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCc-----------hhHHHHHHHHHHHHhcCCCcceeEEe
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGN-----------KGLSEFQAEIAVLTKVRHRHLVALLG 646 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~-----------~~~~~~~~E~~~l~~l~h~niv~l~~ 646 (933)
+.++|++.+.||+|+||.||+|.. .+++.||||++....... ...+.+.+|+.++++++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 468899999999999999999965 468899999997654321 34578999999999999999999999
Q ss_pred EeeeCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCC--
Q 002346 647 YCINGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDM-- 724 (933)
Q Consensus 647 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~-- 724 (933)
++.++...++||||+++|+|.+++... ..+++.+++.++.|++.||+|||+ ++|+||||||+||+++.++
T Consensus 114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~-----~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~ 185 (504)
T 3q5i_A 114 VFEDKKYFYLVTEFYEGGELFEQIINR-----HKFDECDAANIMKQILSGICYLHK---HNIVHRDIKPENILLENKNSL 185 (504)
T ss_dssp EEECSSEEEEEEECCTTCBHHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESSTTCC
T ss_pred EEEcCCEEEEEEecCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCcHHHEEEecCCCC
Confidence 999999999999999999999998652 458999999999999999999999 8999999999999998776
Q ss_pred -cEEEecccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHH
Q 002346 725 -RAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWF 803 (933)
Q Consensus 725 -~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~ 803 (933)
.+||+|||+++...... ......||+.|+|||++. +.++.++||||+||++|+|++|+.||....... . .
T Consensus 186 ~~~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~---~ 256 (504)
T 3q5i_A 186 LNIKIVDFGLSSFFSKDY--KLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQD---I---I 256 (504)
T ss_dssp SSEEECCCTTCEECCTTS--CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---H---H
T ss_pred ccEEEEECCCCEEcCCCC--ccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHH---H---H
Confidence 69999999998765432 223457999999999987 569999999999999999999999998654322 1 1
Q ss_pred HHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 804 RRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 804 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
..+.......+....+ .....+.+++.+|++.||.+|||++|+++
T Consensus 257 ~~i~~~~~~~~~~~~~---------~~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 257 KKVEKGKYYFDFNDWK---------NISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp HHHHHCCCCCCHHHHT---------TSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHcCCCCCCccccC---------CCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 2222211111100001 11245789999999999999999999986
No 196
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=7.1e-38 Score=344.61 Aligned_cols=264 Identities=25% Similarity=0.400 Sum_probs=206.5
Q ss_pred hcCCccCCccccCCCeEEEEEEe------CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCce
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL------PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSE 653 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 653 (933)
.++|++.+.||+|+||.||+|.. .+++.||||++.... ......++.+|+.++++++||||+++++++.....
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 107 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC-SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP 107 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSC-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEecccc-chhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCC
Confidence 47899999999999999999973 357789999997542 34456789999999999999999999999999999
Q ss_pred eEEEEeecCCCChhhHhhhcccC--CCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecC---CCcEEE
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDH--GYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGD---DMRAKV 728 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~--~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~---~~~~kl 728 (933)
.++||||+++++|.+++...... ....+++.+++.++.|+++||+|||+ ++|+||||||+||+++. +..+||
T Consensus 108 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~---~~i~H~dlkp~NIli~~~~~~~~~kl 184 (327)
T 2yfx_A 108 RFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPGPGRVAKI 184 (327)
T ss_dssp CEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEE
T ss_pred cEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhh---CCeecCcCCHhHEEEecCCCcceEEE
Confidence 99999999999999999764321 12458999999999999999999999 89999999999999984 446999
Q ss_pred ecccccccCCCCCc-eeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHH
Q 002346 729 ADFGLVKNAPDGKY-SVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRV 806 (933)
Q Consensus 729 ~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~ 806 (933)
+|||+++....... .......|++.|+|||++.+..++.++||||||+++|||+| |+.||....... ... ..
T Consensus 185 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~---~~~---~~ 258 (327)
T 2yfx_A 185 GDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQE---VLE---FV 258 (327)
T ss_dssp CCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH---HHH---HH
T ss_pred CccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHH---HHH---HH
Confidence 99999875433221 22234568899999999988899999999999999999998 999997653221 111 11
Q ss_pred hhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 807 LISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 807 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
.. .. .. ...... ...+.+++.+||+.||++||++.++++.|+.+...
T Consensus 259 ~~-~~-~~-~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~ 305 (327)
T 2yfx_A 259 TS-GG-RM-DPPKNC---------PGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 305 (327)
T ss_dssp HT-TC-CC-CCCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred hc-CC-CC-CCCCCC---------CHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence 11 11 10 111111 13577999999999999999999999999887543
No 197
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=3.7e-38 Score=351.27 Aligned_cols=261 Identities=24% Similarity=0.388 Sum_probs=186.3
Q ss_pred hcCCccCCccccCCCeEEEEEE-eCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeC------c
Q 002346 580 TDNFSEANILGRGGFGVVYGGE-LPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCING------S 652 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~ 652 (933)
.++|++.+.||+|+||.||+|. ..+|+.||||++..........+++.+|+.+++.++||||+++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 4789999999999999999995 46799999999976654555677899999999999999999999998654 5
Q ss_pred eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccc
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFG 732 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfG 732 (933)
..++||||+ +++|.+++.. ..+++..+..++.|+++||+|||+ .+|+||||||+||+++.++.+||+|||
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~------~~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kL~DFG 177 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKC------QKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFG 177 (367)
T ss_dssp CCEEEEECC-CEECC-----------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECC--
T ss_pred eEEEEeccc-CCCHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHhhEEECCCCCEEEeecc
Confidence 679999999 7899998854 468999999999999999999999 899999999999999999999999999
Q ss_pred ccccCCCCCceeecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccC
Q 002346 733 LVKNAPDGKYSVETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKE 811 (933)
Q Consensus 733 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~ 811 (933)
+++..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+. ...+........
T Consensus 178 ~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~---l~~i~~~~g~p~ 250 (367)
T 2fst_X 178 LARHTADE----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ---LKLILRLVGTPG 250 (367)
T ss_dssp -----------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHH---HHHHHHHHCSCC
T ss_pred cccccccc----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHHhCCCC
Confidence 99865432 234579999999999876 6789999999999999999999999976543222 111111110000
Q ss_pred -----CCC--------cccC--CCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 812 -----NIP--------KAID--PNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 812 -----~~~--------~~~d--~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
.+. ..+. +..............+.+++.+||+.||++||++.|+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~ 311 (367)
T 2fst_X 251 AELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 311 (367)
T ss_dssp HHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence 000 0000 000000000011245789999999999999999999986
No 198
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.1e-38 Score=356.21 Aligned_cols=276 Identities=23% Similarity=0.336 Sum_probs=188.3
Q ss_pred HhcCCcc-CCccccCCCeEEEEEEeC---CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeee--Cc
Q 002346 579 VTDNFSE-ANILGRGGFGVVYGGELP---DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCIN--GS 652 (933)
Q Consensus 579 ~~~~~~~-~~~lg~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~ 652 (933)
+.+.|++ .++||+|+||.||+|... +++.||||++..... ...+.+|+.++++++|||||++++++.. +.
T Consensus 18 ~~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~ 93 (405)
T 3rgf_A 18 VEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI----SMSACREIALLRELKHPNVISLQKVFLSHADR 93 (405)
T ss_dssp HHHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC----CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTT
T ss_pred hhhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC----CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCC
Confidence 3456776 568999999999999754 578999999976532 2468899999999999999999999954 67
Q ss_pred eeEEEEeecCCCChhhHhhhccc----CCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEe----cCCC
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHD----HGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILI----GDDM 724 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~----~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill----~~~~ 724 (933)
..++||||++ ++|.+++..... .....+++..++.++.|++.||+|||+ ++|+||||||+|||+ +.++
T Consensus 94 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivH~Dlkp~NIll~~~~~~~~ 169 (405)
T 3rgf_A 94 KVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERG 169 (405)
T ss_dssp EEEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECCSSTTTT
T ss_pred eEEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCEeCCCcCHHHeEEecCCCCCC
Confidence 8899999996 588888754221 112359999999999999999999999 899999999999999 7788
Q ss_pred cEEEecccccccCCCCCc--eeecccccccCcccccccCCC-CCCCccchHhHHHHHHHHHcCCCCCCCCCCch------
Q 002346 725 RAKVADFGLVKNAPDGKY--SVETRLAGTFGYLAPEYAATG-RVTTKIDVYAFGVVLMETITGRKALDDTMPDD------ 795 (933)
Q Consensus 725 ~~kl~DfGla~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~------ 795 (933)
.+||+|||+++....... .......||+.|+|||++.+. .++.++|||||||++|||++|+.||.......
T Consensus 170 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~ 249 (405)
T 3rgf_A 170 RVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPY 249 (405)
T ss_dssp CEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCC
T ss_pred cEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccc
Confidence 999999999986543221 222446899999999998774 58999999999999999999999997643311
Q ss_pred -hhHHHHHHHHHhhccC-CCCcccC-C-------CCCC----ChhhHH--------HHHHHHHHHHHcccCCCCCCCCHH
Q 002346 796 -RAHLVTWFRRVLISKE-NIPKAID-P-------NLNL----DEETIE--------SIYRVAELAGHCTAREPQQRPDMG 853 (933)
Q Consensus 796 -~~~~~~~~~~~~~~~~-~~~~~~d-~-------~l~~----~~~~~~--------~~~~~~~li~~cl~~~P~~RPs~~ 853 (933)
...+...+...-.... .+..... + .+.. ...... ....+.+++.+||+.||++|||++
T Consensus 250 ~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~ 329 (405)
T 3rgf_A 250 HHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSE 329 (405)
T ss_dssp CHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHH
T ss_pred hHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHH
Confidence 1111111111100000 0000000 0 0000 000000 023567999999999999999999
Q ss_pred HHHHHHhhhhhhcCC
Q 002346 854 HAVNVLGPLVEQWKP 868 (933)
Q Consensus 854 evl~~L~~~~~~~~~ 868 (933)
|+++ ++|..
T Consensus 330 e~L~------hp~f~ 338 (405)
T 3rgf_A 330 QAMQ------DPYFL 338 (405)
T ss_dssp HHHT------SGGGT
T ss_pred HHhc------Chhhc
Confidence 9987 67764
No 199
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=4.5e-38 Score=338.85 Aligned_cols=247 Identities=26% Similarity=0.452 Sum_probs=204.5
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC-chhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG-NKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
++|++.+.||+|+||.||+|.. .+++.||+|++...... ....+.+.+|+.++++++||||+++++++.++...++||
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 93 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML 93 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence 6799999999999999999965 46889999998654321 223567999999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+++++|.+++... ..+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||++....
T Consensus 94 e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~ 165 (284)
T 2vgo_A 94 EFAPRGELYKELQKH-----GRFDEQRSATFMEELADALHYCHE---RKVIHRDIKPENLLMGYKGELKIADFGWSVHAP 165 (284)
T ss_dssp CCCTTEEHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECTTCCEEECCCTTCEECS
T ss_pred EeCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEEcCCCCEEEecccccccCc
Confidence 999999999999662 458999999999999999999998 899999999999999999999999999987654
Q ss_pred CCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccC
Q 002346 739 DGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAID 818 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 818 (933)
... .....|++.|+|||++.+..++.++||||||+++|||++|+.||........ ...........+
T Consensus 166 ~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~------~~~~~~~~~~~~---- 232 (284)
T 2vgo_A 166 SLR---RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTET------HRRIVNVDLKFP---- 232 (284)
T ss_dssp SSC---BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHH------HHHHHTTCCCCC----
T ss_pred ccc---cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHH------HHHHhccccCCC----
Confidence 322 2345789999999999998999999999999999999999999976432211 112221111111
Q ss_pred CCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 819 PNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 819 ~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
+.+ ...+.+++.+|++.||++||++.++++
T Consensus 233 ~~~---------~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 233 PFL---------SDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp TTS---------CHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CcC---------CHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 111 135779999999999999999999986
No 200
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=5.5e-38 Score=339.30 Aligned_cols=255 Identities=24% Similarity=0.339 Sum_probs=190.2
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
.++|++.+.||+|+||.||+|.. .+|+.||||++..........+.+.++...++.++||||+++++++.+++..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 57899999999999999999965 57999999999876444444445556666688889999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCC-CeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQ-SFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
||++ |+|.+++...... ...+++..++.++.|++.||+|||+ + +|+||||||+||+++.++.+||+|||+++..
T Consensus 86 e~~~-~~l~~~l~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 160 (290)
T 3fme_A 86 ELMD-TSLDKFYKQVIDK-GQTIPEDILGKIAVSIVKALEHLHS---KLSVIHRDVKPSNVLINALGQVKMCDFGISGYL 160 (290)
T ss_dssp ECCS-EEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHHH---HSCCCCCCCSGGGCEECTTCCEEBCCC------
T ss_pred ehhc-cchHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhh---cCCeecCCCCHHHEEECCCCCEEEeecCCcccc
Confidence 9996 5998887653222 3579999999999999999999998 6 9999999999999999999999999999865
Q ss_pred CCCCceeecccccccCccccccc----CCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCC
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYA----ATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENI 813 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (933)
..... .....||+.|+|||++ .+..++.++||||+|+++|||++|+.||........ ... .... ...
T Consensus 161 ~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~~----~~~~--~~~ 231 (290)
T 3fme_A 161 VDDVA--KDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQ-QLK----QVVE--EPS 231 (290)
T ss_dssp -----------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHH-HHH----HHHH--SCC
T ss_pred ccccc--ccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHH-HHH----HHhc--cCC
Confidence 54322 2334799999999996 556789999999999999999999999975432211 111 1111 111
Q ss_pred CcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 814 PKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 814 ~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
+....... ...+.+++.+|++.||++||+++|+++
T Consensus 232 ~~~~~~~~---------~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 232 PQLPADKF---------SAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp CCCCTTTS---------CHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCcccccC---------CHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 11111111 235789999999999999999999976
No 201
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-37 Score=359.98 Aligned_cols=342 Identities=19% Similarity=0.225 Sum_probs=268.0
Q ss_pred CCccccc--eEeCCC---------CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC--CccCcCcCceec
Q 002346 53 GYCEWTG--INCDNS---------NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP--SLANATSLQDIY 119 (933)
Q Consensus 53 ~~C~w~g--v~c~~~---------~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~L~~L~ 119 (933)
..|.|.+ |.|++. .+++.|+|++|++++..|..|+.+++|++|+|++|.+.+.++ .|.++++|++|+
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 3465555 888753 479999999999999889999999999999999999986654 699999999999
Q ss_pred cccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChh-hcCCCCCCEEEccCCc
Q 002346 120 LDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDF-FDSFSNLQNLRLSYNN 198 (933)
Q Consensus 120 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~ 198 (933)
|++|+++++++..|+++++|++|+|++|++.+..+....+..+++|++|+|++|++.+..|.. |..+++|++|+|++|+
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 999999999998999999999999999999872222234899999999999999999998876 8999999999999999
Q ss_pred CCCCCCccccc---cccchhhcccccCCcccccc-------cccCCccCcEEEecCCccCCCCCC-C-------------
Q 002346 199 FTGSLPASFAK---SDIQNLWMNDQQLGLSGTLD-------VLSGMTQLRQVWLHKNQFTGPIPD-L------------- 254 (933)
Q Consensus 199 l~~~~p~~~~~---~~l~~l~l~~n~~~~~~~~~-------~l~~l~~L~~L~L~~N~l~~~~~~-~------------- 254 (933)
+++..|..+.. ..++.|++..|.+....... .+..+++|+.|+|++|++++..+. +
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 99888888765 56778888888776543321 233457888888888887653331 1
Q ss_pred ------------------------C--CCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCCC---CCc
Q 002346 255 ------------------------S--KCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLFP---SKV 305 (933)
Q Consensus 255 ------------------------~--~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~l 305 (933)
. ..++|+.|+|++|++++.+|..+..+++|++|+|++|++++..|..+ .+|
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 1 12467777777777776677777777777777777777776655432 466
Q ss_pred cEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCch
Q 002346 306 QKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISP 385 (933)
Q Consensus 306 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~ 385 (933)
+.|+|++|.+.+. .|..+..+++|+.|+|++|++++..|.
T Consensus 326 ~~L~Ls~N~l~~~----------------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 365 (455)
T 3v47_A 326 LKLNLSQNFLGSI----------------------------------------DSRMFENLDKLEVLDLSYNHIRALGDQ 365 (455)
T ss_dssp CEEECCSSCCCEE----------------------------------------CGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred CEEECCCCccCCc----------------------------------------ChhHhcCcccCCEEECCCCcccccChh
Confidence 6777777766432 244566778888888888888888888
Q ss_pred hhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccCCCC
Q 002346 386 AYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKVPDF 434 (933)
Q Consensus 386 ~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p~~ 434 (933)
.|.++++|++|+|++|+|++..+..|..+++|+.|++++|++++.+|..
T Consensus 366 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 8888888888888888888766667788888888888888888888753
No 202
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=1.5e-37 Score=337.58 Aligned_cols=272 Identities=25% Similarity=0.355 Sum_probs=204.3
Q ss_pred cCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEe
Q 002346 581 DNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 659 (933)
++|++.+.||+|+||.||+|... +|+.||||++..........+.+.+|+.++++++||||+++++++..++..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 57999999999999999999654 78999999997664444445788999999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCC
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPD 739 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~ 739 (933)
|++ ++|.+++.... ...+++..++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||++.....
T Consensus 83 ~~~-~~L~~~~~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~ 155 (299)
T 2r3i_A 83 FLH-QDLKKFMDASA---LTGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGV 155 (299)
T ss_dssp CCS-EEHHHHHHHTT---TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCC
T ss_pred ccc-CCHHHHHHhhh---ccCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHeEEcCCCCEEECcchhhhhccC
Confidence 997 69999986522 2458999999999999999999999 8999999999999999999999999999876543
Q ss_pred CCceeecccccccCcccccccCCCC-CCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCC-CCc--
Q 002346 740 GKYSVETRLAGTFGYLAPEYAATGR-VTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKEN-IPK-- 815 (933)
Q Consensus 740 ~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 815 (933)
... ......||+.|+|||.+.+.. ++.++||||||+++|||++|+.||......+ .+............. .+.
T Consensus 156 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 232 (299)
T 2r3i_A 156 PVR-TYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEID--QLFRIFRTLGTPDEVVWPGVT 232 (299)
T ss_dssp CSB-CTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH--HHHHHHHHHCCCCTTTSTTGG
T ss_pred Ccc-ccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHH--HHHHHHHHhCCCchhhhhHhh
Confidence 221 223457899999999987765 7999999999999999999999998654322 122211111100000 000
Q ss_pred ---ccCCCCC----CCh--hhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 816 ---AIDPNLN----LDE--ETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 816 ---~~d~~l~----~~~--~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
...+.+. ... ........+.+++.+|++.||++||++.|+++ ++|..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~------hp~~~ 288 (299)
T 2r3i_A 233 SMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA------HPFFQ 288 (299)
T ss_dssp GSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT------SGGGT
T ss_pred cCcccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc------Chhhh
Confidence 0000100 000 00012246789999999999999999999986 66654
No 203
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=9.4e-39 Score=358.60 Aligned_cols=244 Identities=15% Similarity=0.183 Sum_probs=191.2
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC-CchhHHHHHHHH---HHHHhcCCCcceeEE-------eE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM-GNKGLSEFQAEI---AVLTKVRHRHLVALL-------GY 647 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~---~~l~~l~h~niv~l~-------~~ 647 (933)
.++|++.+.||+|+||.||+|.. .+|+.||||++..... .....+.+.+|+ +.+++++|||||+++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 46789999999999999999975 5699999999975432 334567899999 455555899999998 55
Q ss_pred eeeCc-----------------eeEEEEeecCCCChhhHhhhcccC--CCCCCCHHHHHHHHHHHHHHHHHhhhccCCCe
Q 002346 648 CINGS-----------------ERLLVYEYMPRGTLAQHLFEWHDH--GYTPLTWKQRVTIALDVARGVEYLHSLAQQSF 708 (933)
Q Consensus 648 ~~~~~-----------------~~~lv~e~~~~gsL~~~l~~~~~~--~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~i 708 (933)
+..++ ..++||||+ +|+|.+++...... ....+++..++.|+.||++||+|||+ ++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH---YGL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHH---TTE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHh---CCe
Confidence 55443 278999999 68999999763211 11345568899999999999999999 899
Q ss_pred EecCCCCCcEEecCCCcEEEecccccccCCCCCceeecccccccCcccccccCCC-----------CCCCccchHhHHHH
Q 002346 709 IHRDLKPSNILIGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATG-----------RVTTKIDVYAFGVV 777 (933)
Q Consensus 709 vH~Dik~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~Dv~SlG~~ 777 (933)
+||||||+|||++.++.+||+|||+++.... ......| +.|+|||++.+. .++.++|||||||+
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~i 302 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLV 302 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTC----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCC----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHH
Confidence 9999999999999999999999999986433 2344578 999999999877 89999999999999
Q ss_pred HHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccC--CCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHH
Q 002346 778 LMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAID--PNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHA 855 (933)
Q Consensus 778 l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~ev 855 (933)
+|||++|+.||......... ..... +.+ ...+.+++.+||+.||++||++.|+
T Consensus 303 l~elltg~~Pf~~~~~~~~~----------------~~~~~~~~~~---------~~~~~~li~~~L~~dp~~Rpt~~e~ 357 (377)
T 3byv_A 303 IYWIWCADLPITKDAALGGS----------------EWIFRSCKNI---------PQPVRALLEGFLRYPKEDRLLPLQA 357 (377)
T ss_dssp HHHHHHSSCCC------CCS----------------GGGGSSCCCC---------CHHHHHHHHHHTCSSGGGCCCHHHH
T ss_pred HHHHHHCCCCCcccccccch----------------hhhhhhccCC---------CHHHHHHHHHHcCCCchhCCCHHHH
Confidence 99999999999754321110 00111 111 1357799999999999999999999
Q ss_pred HH
Q 002346 856 VN 857 (933)
Q Consensus 856 l~ 857 (933)
++
T Consensus 358 l~ 359 (377)
T 3byv_A 358 ME 359 (377)
T ss_dssp HT
T ss_pred hh
Confidence 86
No 204
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=1.8e-37 Score=332.61 Aligned_cols=249 Identities=27% Similarity=0.431 Sum_probs=197.1
Q ss_pred hcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccC-CchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
.++|++.+.||+|+||.||+|... +|+.||||++..... .....+.+.+|+.+++.++||||+++++++..++..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 368999999999999999999764 799999999875432 223456899999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+++++|.+++... ..+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||++...
T Consensus 90 ~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~ 161 (276)
T 2h6d_A 90 MEYVSGGELFDYICKH-----GRVEEMEARRLFQQILSAVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMM 161 (276)
T ss_dssp EECCCSCBHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHHH---HCSSCCCCCGGGEEECTTSCEEECCCCGGGCC
T ss_pred EeccCCCcHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChhhEEECCCCCEEEeeccccccc
Confidence 9999999999999652 458999999999999999999999 89999999999999999999999999999866
Q ss_pred CCCCceeecccccccCcccccccCCCCC-CCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcc
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAATGRV-TTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKA 816 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (933)
..... .....|++.|+|||.+.+..+ +.++||||||+++|||++|+.||...... ... ..........+..
T Consensus 162 ~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~---~~~---~~~~~~~~~~~~~ 233 (276)
T 2h6d_A 162 SDGEF--LRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVP---TLF---KKIRGGVFYIPEY 233 (276)
T ss_dssp CC---------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHH---HHHHHCCCCCCTT
T ss_pred CCCcc--eecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHH---HHH---HHhhcCcccCchh
Confidence 54322 234578999999999987765 68999999999999999999999764321 111 1111111111111
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 817 IDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 817 ~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
+ ...+.+++.+|++.||++||++.|+++
T Consensus 234 ----~---------~~~l~~li~~~l~~~p~~Rps~~~~l~ 261 (276)
T 2h6d_A 234 ----L---------NRSVATLLMHMLQVDPLKRATIKDIRE 261 (276)
T ss_dssp ----S---------CHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred ----c---------CHHHHHHHHHHccCChhhCCCHHHHHh
Confidence 1 135779999999999999999999987
No 205
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=7.2e-38 Score=363.70 Aligned_cols=253 Identities=23% Similarity=0.359 Sum_probs=206.5
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC-chhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG-NKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLL 656 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 656 (933)
+.++|++.+.||+|+||.||+|.. .+|+.||||++...... ....+.+.+|+.++++++||||+++++++.+....++
T Consensus 24 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l 103 (484)
T 3nyv_A 24 FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYL 103 (484)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 357899999999999999999965 47999999999765432 3456789999999999999999999999999999999
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEe---cCCCcEEEecccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILI---GDDMRAKVADFGL 733 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill---~~~~~~kl~DfGl 733 (933)
||||+.+|+|.+++.. ...+++.+++.++.|++.||+|||+ ++|+||||||+||++ +.++.+||+|||+
T Consensus 104 v~e~~~~~~L~~~~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~ 175 (484)
T 3nyv_A 104 VGEVYTGGELFDEIIS-----RKRFSEVDAARIIRQVLSGITYMHK---NKIVHRDLKPENLLLESKSKDANIRIIDFGL 175 (484)
T ss_dssp EECCCCSCBHHHHHHT-----CSCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEECCTTH
T ss_pred EEecCCCCCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEEecCCCCCcEEEEeeee
Confidence 9999999999999865 2568999999999999999999999 899999999999999 5678999999999
Q ss_pred cccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCC
Q 002346 734 VKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENI 813 (933)
Q Consensus 734 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (933)
++....... .....||+.|+|||++.+ .++.++||||+||++|||++|+.||......+ .. ..+.......
T Consensus 176 a~~~~~~~~--~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~~---~~i~~~~~~~ 246 (484)
T 3nyv_A 176 STHFEASKK--MKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYD---IL---KKVEKGKYTF 246 (484)
T ss_dssp HHHBCCCCS--HHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH---HHHHHCCCCC
T ss_pred eEEcccccc--cccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHH---HH---HHHHcCCCCC
Confidence 987654332 234579999999999865 69999999999999999999999998653322 11 1222111111
Q ss_pred CcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 814 PKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 814 ~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
+.. ........+.+++.+||+.+|++|||+.|+++
T Consensus 247 ~~~---------~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 247 ELP---------QWKKVSESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp CSG---------GGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCc---------ccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 100 00111245779999999999999999999986
No 206
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=5.7e-38 Score=375.93 Aligned_cols=245 Identities=25% Similarity=0.367 Sum_probs=204.0
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC-CchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCceeEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGSERLL 656 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 656 (933)
.++|++.+.||+|+||.||+|.. .+++.||||++++... .....+.+..|..++..+ +||+|+++++++.+.+..|+
T Consensus 340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~l 419 (674)
T 3pfq_A 340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF 419 (674)
T ss_dssp CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEE
T ss_pred ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEE
Confidence 47899999999999999999965 4688999999976432 233456788999999988 79999999999999999999
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKN 736 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~ 736 (933)
||||+++|+|.+++... ..+++.+++.++.||+.||+|||+ ++||||||||+|||++.++++||+|||+++.
T Consensus 420 V~E~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH~---~gIiHrDLKp~NILl~~~g~ikL~DFGla~~ 491 (674)
T 3pfq_A 420 VMEYVNGGDLMYHIQQV-----GRFKEPHAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKE 491 (674)
T ss_dssp EEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHH---TSEECCCCCSTTEEECSSSCEEECCCTTCEE
T ss_pred EEeCcCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHh---CCeEeccCChhhEEEcCCCcEEEeecceeec
Confidence 99999999999999762 468999999999999999999999 8999999999999999999999999999986
Q ss_pred CCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcc
Q 002346 737 APDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKA 816 (933)
Q Consensus 737 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (933)
...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...... ..+..+......++..
T Consensus 492 ~~~~~~-~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~------~~~~~i~~~~~~~p~~ 564 (674)
T 3pfq_A 492 NIWDGV-TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED------ELFQSIMEHNVAYPKS 564 (674)
T ss_dssp CCCTTC-CBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHHHSSCCCCCTT
T ss_pred cccCCc-ccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHH------HHHHHHHhCCCCCCcc
Confidence 443322 234568999999999999999999999999999999999999999864322 1223333323222221
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCH
Q 002346 817 IDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDM 852 (933)
Q Consensus 817 ~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~ 852 (933)
+ ..++.+++.+||+.||++||++
T Consensus 565 ----~---------s~~~~~li~~lL~~dP~~R~~~ 587 (674)
T 3pfq_A 565 ----M---------SKEAVAICKGLMTKHPGKRLGC 587 (674)
T ss_dssp ----S---------CHHHHHHHHHHSCSSSTTCTTC
T ss_pred ----C---------CHHHHHHHHHHccCCHHHCCCC
Confidence 1 1357799999999999999997
No 207
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=1.7e-38 Score=345.63 Aligned_cols=265 Identities=24% Similarity=0.396 Sum_probs=187.8
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
..++|++.+.||+|+||.||+|.. .+++.||||++.... .....+++.+|+.++++++||||+++++++...+..++|
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (303)
T 2vwi_A 13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEK-CQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLV 91 (303)
T ss_dssp CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC-----------------CCCCCCCTTBCCEEEEEESSSCEEEE
T ss_pred chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhh-cchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEE
Confidence 357899999999999999999965 478999999987653 233456789999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccC---CCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccc
Q 002346 658 YEYMPRGTLAQHLFEWHDH---GYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLV 734 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~---~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla 734 (933)
|||+++++|.+++...... ....+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||++
T Consensus 92 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~ 168 (303)
T 2vwi_A 92 MKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHK---NGQIHRDVKAGNILLGEDGSVQIADFGVS 168 (303)
T ss_dssp EECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTCCEEECCCHHH
T ss_pred ehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCCCCCCCChhhEEEcCCCCEEEEeccch
Confidence 9999999999998653211 23568999999999999999999999 89999999999999999999999999998
Q ss_pred ccCCCCCc----eeecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhc
Q 002346 735 KNAPDGKY----SVETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLIS 809 (933)
Q Consensus 735 ~~~~~~~~----~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~ 809 (933)
........ .......||+.|+|||++.+ ..++.++||||||+++|||++|+.||........... .....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~-----~~~~~ 243 (303)
T 2vwi_A 169 AFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLML-----TLQND 243 (303)
T ss_dssp HHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHH-----HHTSS
T ss_pred heeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHH-----HhccC
Confidence 76543321 11234579999999999865 5689999999999999999999999987544322110 11111
Q ss_pred cCCCCccc-CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 810 KENIPKAI-DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 810 ~~~~~~~~-d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
........ ++... . .....+.+++.+||+.||++||++.++++
T Consensus 244 ~~~~~~~~~~~~~~-~----~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 244 PPSLETGVQDKEML-K----KYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp CCCTTC-----CCC-C----CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CCccccccccchhh-h----hhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 11111100 01110 0 11235779999999999999999999986
No 208
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=1.9e-37 Score=346.41 Aligned_cols=262 Identities=22% Similarity=0.349 Sum_probs=201.7
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeC-----ce
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCING-----SE 653 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 653 (933)
.++|++.+.||+|+||.||+|.. .+++.||||++.... .....+.+.+|++++++++||||+++++++... ..
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 104 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFE-HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD 104 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTT-CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEecccc-CcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccce
Confidence 46899999999999999999954 578899999997542 344457899999999999999999999998754 36
Q ss_pred eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccc
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGL 733 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGl 733 (933)
.++||||++ |+|.+++.. ..+++.+++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||+
T Consensus 105 ~~iv~e~~~-~~L~~~l~~------~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~ 174 (364)
T 3qyz_A 105 VYIVQDLME-TDLYKLLKT------QHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGL 174 (364)
T ss_dssp EEEEEECCS-EEHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred EEEEEcccC-cCHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCChHhEEECCCCCEEEEeCcc
Confidence 799999996 599999865 458999999999999999999999 8999999999999999999999999999
Q ss_pred cccCCCCCcee--ecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhcc
Q 002346 734 VKNAPDGKYSV--ETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISK 810 (933)
Q Consensus 734 a~~~~~~~~~~--~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~ 810 (933)
++......... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||......+..... .......
T Consensus 175 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i---~~~~~~~ 251 (364)
T 3qyz_A 175 ARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHI---LGILGSP 251 (364)
T ss_dssp CEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHH---HHHHCSC
T ss_pred eEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHH---HHHhCCC
Confidence 98665432211 234589999999998654 45899999999999999999999999876443322111 1100000
Q ss_pred C-----------------CCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 811 E-----------------NIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 811 ~-----------------~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
. ..+. ................+.+++.+||+.||++||++.|+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 252 SQEDLNCIINLKARNYLLSLPH--KNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp CHHHHHTCCCHHHHHHHHTSCC--CCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CHHHHHHhhhhhHHHHHHhcCC--ccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 0 0000 0000000000111245789999999999999999999986
No 209
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=1.3e-37 Score=336.55 Aligned_cols=259 Identities=26% Similarity=0.440 Sum_probs=198.1
Q ss_pred hcCCccCCccccCCCeEEEEEEeC--CCc--EEEEEEeccccC-CchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCcee
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP--DGT--KIAVKRMESNTM-GNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSER 654 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~--~~~--~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 654 (933)
.++|++.+.||+|+||.||+|... +++ .||||+++.... .....+++.+|+.++++++||||+++++++..+. .
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 368999999999999999999642 333 689999876533 2345678999999999999999999999998755 8
Q ss_pred EEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccc
Q 002346 655 LLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLV 734 (933)
Q Consensus 655 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla 734 (933)
++||||+++++|.+++... ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||++
T Consensus 96 ~~v~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~ 168 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRKH----QGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLM 168 (291)
T ss_dssp EEEEECCTTCBHHHHHHHH----GGGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCTTC
T ss_pred eeeEecccCCCHHHHHHhc----cCCcCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchheEEEcCCCCEEEcccccc
Confidence 8999999999999999752 1458999999999999999999999 89999999999999999999999999999
Q ss_pred ccCCCCCce--eecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccC
Q 002346 735 KNAPDGKYS--VETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKE 811 (933)
Q Consensus 735 ~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~ 811 (933)
......... ......+++.|+|||++.+..++.++||||||+++|||++ |+.||....... . .........
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~---~---~~~~~~~~~ 242 (291)
T 1u46_A 169 RALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQ---I---LHKIDKEGE 242 (291)
T ss_dssp EECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH---H---HHHHHTSCC
T ss_pred ccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHH---H---HHHHHccCC
Confidence 876544322 2234567889999999988889999999999999999999 999997653321 1 112111111
Q ss_pred CCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhh
Q 002346 812 NIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLV 863 (933)
Q Consensus 812 ~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~ 863 (933)
..+ .... ....+.+++.+|++.+|++||++.++++.|+++.
T Consensus 243 ~~~--~~~~---------~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~ 283 (291)
T 1u46_A 243 RLP--RPED---------CPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQ 283 (291)
T ss_dssp CCC--CCTT---------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred CCC--CCcC---------cCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhC
Confidence 111 1111 1245789999999999999999999999998764
No 210
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=3.4e-37 Score=345.01 Aligned_cols=263 Identities=21% Similarity=0.292 Sum_probs=195.8
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCc------
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGS------ 652 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 652 (933)
.++|++.+.||+|+||.||+|.. .+++.||||++..........+.+.+|+.+++.++||||+++++++....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 46899999999999999999954 57899999999876545556678999999999999999999999997654
Q ss_pred eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccc
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFG 732 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfG 732 (933)
..++||||++ ++|.+++. ..+++.++..++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||
T Consensus 104 ~~~lv~e~~~-~~l~~~~~-------~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 172 (371)
T 2xrw_A 104 DVYIVMELMD-ANLCQVIQ-------MELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFG 172 (371)
T ss_dssp EEEEEEECCS-EEHHHHHH-------SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCCC
T ss_pred ceEEEEEcCC-CCHHHHHh-------hccCHHHHHHHHHHHHHHHHHHHH---CCeecccCCHHHEEEcCCCCEEEEEee
Confidence 7899999996 57888874 348899999999999999999999 899999999999999999999999999
Q ss_pred ccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHH--------
Q 002346 733 LVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFR-------- 804 (933)
Q Consensus 733 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~-------- 804 (933)
+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+. +...+.
T Consensus 173 ~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~--~~~i~~~~~~~~~~ 248 (371)
T 2xrw_A 173 LARTAGTSF--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQ--WNKVIEQLGTPCPE 248 (371)
T ss_dssp C------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHC-CCCCCHH
T ss_pred ccccccccc--ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHHHhCCCCHH
Confidence 998654322 22345799999999999998999999999999999999999999976533211 100000
Q ss_pred ----------HHhhccCCCC-----cccCCC-CC-CChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 805 ----------RVLISKENIP-----KAIDPN-LN-LDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 805 ----------~~~~~~~~~~-----~~~d~~-l~-~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
.......... ..+... .. ...........+.+++.+||+.||++|||++|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~ 318 (371)
T 2xrw_A 249 FMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ 318 (371)
T ss_dssp HHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence 0000000000 000000 00 01112233567889999999999999999999987
No 211
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=2.3e-37 Score=346.27 Aligned_cols=262 Identities=21% Similarity=0.331 Sum_probs=201.8
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCcee----
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSER---- 654 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 654 (933)
.++|.+.+.||+|+||.||+|.. .+|+.||||++..........+++.+|+.+++.++||||+++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 57899999999999999999954 5799999999987655555678899999999999999999999999876654
Q ss_pred --EEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccc
Q 002346 655 --LLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFG 732 (933)
Q Consensus 655 --~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfG 732 (933)
++||||++ ++|.+++. ..+++.++..++.|++.||+|||+ ++|+||||||+||+++.++.+||+|||
T Consensus 121 ~~~lv~e~~~-~~l~~~~~-------~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kL~Dfg 189 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMG-------MEFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFG 189 (371)
T ss_dssp CCEEEEECCC-EEHHHHTT-------SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECSTT
T ss_pred eEEEEEcccc-ccHHHHhh-------cCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCcCHHHeEECCCCCEEEEecC
Confidence 99999996 68888773 348999999999999999999999 899999999999999999999999999
Q ss_pred ccccCCCCCceeecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccC
Q 002346 733 LVKNAPDGKYSVETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKE 811 (933)
Q Consensus 733 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~ 811 (933)
+++..... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||......+. +.... ... +
T Consensus 190 ~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~--~~~i~-~~~---~ 259 (371)
T 4exu_A 190 LARHADAE----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQ--LTQIL-KVT---G 259 (371)
T ss_dssp CC------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHH--HHHHH-HHH---C
T ss_pred cccccccC----cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHH--HHHHH-HHh---C
Confidence 99855432 234578999999999877 6789999999999999999999999986532221 11111 100 0
Q ss_pred CCCcc----------------cCCCCCCC--hhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 812 NIPKA----------------IDPNLNLD--EETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 812 ~~~~~----------------~d~~l~~~--~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
..+.. +....... .........+.+++.+||+.||++||+++|+++ ++|..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~------hp~f~ 328 (371)
T 4exu_A 260 VPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT------HPFFE 328 (371)
T ss_dssp CCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT------SGGGT
T ss_pred CCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc------Ccccc
Confidence 00000 00000000 000111346789999999999999999999986 66654
No 212
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=4.4e-37 Score=333.12 Aligned_cols=252 Identities=22% Similarity=0.385 Sum_probs=198.1
Q ss_pred CCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEee
Q 002346 582 NFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYEY 660 (933)
Q Consensus 582 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 660 (933)
.|.....||+|+||.||+|.. .+++.||||++... .....+.+.+|+.+++.++||||+++++++...+..++||||
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 100 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPER--DSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQ 100 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECC--CC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCC--chHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEe
Confidence 455566899999999999964 57899999998765 234457899999999999999999999999999999999999
Q ss_pred cCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecC-CCcEEEecccccccCCC
Q 002346 661 MPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGD-DMRAKVADFGLVKNAPD 739 (933)
Q Consensus 661 ~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~-~~~~kl~DfGla~~~~~ 739 (933)
+++++|.+++... .....+++..+..++.|+++||+|||+ ++|+||||||+||+++. ++.+||+|||++.....
T Consensus 101 ~~~~~L~~~l~~~--~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~ 175 (295)
T 2clq_A 101 VPGGSLSALLRSK--WGPLKDNEQTIGFYTKQILEGLKYLHD---NQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAG 175 (295)
T ss_dssp CSEEEHHHHHHHT--TCCCTTCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC
T ss_pred CCCCCHHHHHHhh--ccCCCccHHHHHHHHHHHHHHHHHHHh---CCEEccCCChhhEEEECCCCCEEEeecccccccCC
Confidence 9999999999762 223457899999999999999999999 89999999999999987 89999999999986654
Q ss_pred CCceeecccccccCcccccccCCCC--CCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 740 GKYSVETRLAGTFGYLAPEYAATGR--VTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 740 ~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
... ......|++.|+|||++.+.. ++.++||||||+++|||++|+.||......... . +.......... +
T Consensus 176 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~-~--~~~~~~~~~~~----~ 247 (295)
T 2clq_A 176 INP-CTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAA-M--FKVGMFKVHPE----I 247 (295)
T ss_dssp ------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHH-H--HHHHHHCCCCC----C
T ss_pred CCC-cccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHH-H--Hhhcccccccc----c
Confidence 321 223457999999999987643 789999999999999999999999754322111 1 11111111111 1
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
.... ...+.+++.+||+.||++||++.++++
T Consensus 248 ~~~~---------~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 248 PESM---------SAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp CTTS---------CHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred cccC---------CHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 1111 135779999999999999999999986
No 213
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.2e-37 Score=343.28 Aligned_cols=268 Identities=24% Similarity=0.298 Sum_probs=197.5
Q ss_pred HhcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCc---hhHHHHHHHHHHHHhcCCCcceeEEeEeeeCcee
Q 002346 579 VTDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGN---KGLSEFQAEIAVLTKVRHRHLVALLGYCINGSER 654 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 654 (933)
..++|++.+.||+|+||.||+|... +|+.||||++....... ...+.+.+|+.++++++||||+++++++.+....
T Consensus 8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (346)
T 1ua2_A 8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI 87 (346)
T ss_dssp -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence 4578999999999999999999764 68999999997643221 1124688999999999999999999999999999
Q ss_pred EEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccc
Q 002346 655 LLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLV 734 (933)
Q Consensus 655 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla 734 (933)
++||||+++ +|.+++.. ....+++.++..++.|+++||+|||+ .+|+||||||+||+++.++.+||+|||++
T Consensus 88 ~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a 159 (346)
T 1ua2_A 88 SLVFDFMET-DLEVIIKD----NSLVLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPNNLLLDENGVLKLADFGLA 159 (346)
T ss_dssp EEEEECCSE-EHHHHHTT----CCSSCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCCGGG
T ss_pred EEEEEcCCC-CHHHHHHh----cCcCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEEcCCCCEEEEecccc
Confidence 999999975 89888854 12468899999999999999999999 89999999999999999999999999999
Q ss_pred ccCCCCCceeecccccccCcccccccCCC-CCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhc-cCC
Q 002346 735 KNAPDGKYSVETRLAGTFGYLAPEYAATG-RVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLIS-KEN 812 (933)
Q Consensus 735 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~-~~~ 812 (933)
+...... .......||+.|+|||++.+. .++.++|||||||++|||++|.+||......+ .+...+...... ...
T Consensus 160 ~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~--~~~~i~~~~~~~~~~~ 236 (346)
T 1ua2_A 160 KSFGSPN-RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLD--QLTRIFETLGTPTEEQ 236 (346)
T ss_dssp STTTSCC-CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHHHCCCCTTT
T ss_pred eeccCCc-ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHH--HHHHHHHHcCCCChhh
Confidence 8664432 223345789999999998654 58899999999999999999999987653322 122211111100 011
Q ss_pred CCcccC--CCCCC---Chhh-----HHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 813 IPKAID--PNLNL---DEET-----IESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 813 ~~~~~d--~~l~~---~~~~-----~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
++.... ..... .... ......+.+++.+|++.||++|||++|+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 291 (346)
T 1ua2_A 237 WPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK 291 (346)
T ss_dssp SSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred hhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence 111000 00000 0000 112246889999999999999999999987
No 214
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=1.7e-37 Score=340.78 Aligned_cols=255 Identities=24% Similarity=0.342 Sum_probs=198.1
Q ss_pred HHhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC------chhHHHHHHHHHHHHhcCCCcceeEEeEeee
Q 002346 578 QVTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG------NKGLSEFQAEIAVLTKVRHRHLVALLGYCIN 650 (933)
Q Consensus 578 ~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 650 (933)
.+.++|++.+.||+|+||.||+|.. .+++.||||++...... ......+.+|++++++++||||+++++++..
T Consensus 7 ~l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~ 86 (322)
T 2ycf_A 7 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 86 (322)
T ss_dssp HHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES
T ss_pred hhhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC
Confidence 3567899999999999999999965 56899999998764321 1223468899999999999999999999876
Q ss_pred CceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCc---EE
Q 002346 651 GSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMR---AK 727 (933)
Q Consensus 651 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~---~k 727 (933)
+. .++||||+++++|.+++.. ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++. +|
T Consensus 87 ~~-~~lv~e~~~~~~L~~~~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~~~~k 157 (322)
T 2ycf_A 87 ED-YYIVLELMEGGELFDKVVG-----NKRLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIK 157 (322)
T ss_dssp SS-EEEEEECCTTEETHHHHST-----TCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSSSCCEE
T ss_pred Cc-eEEEEecCCCCcHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEecCCCCCeEE
Confidence 54 8999999999999999854 3568999999999999999999999 89999999999999987664 99
Q ss_pred EecccccccCCCCCceeecccccccCcccccccC---CCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHH
Q 002346 728 VADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAA---TGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFR 804 (933)
Q Consensus 728 l~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~ 804 (933)
|+|||+++...... ......||+.|+|||++. ...++.++|||||||++|||++|+.||........ +...+.
T Consensus 158 l~Dfg~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~~~~~~ 233 (322)
T 2ycf_A 158 ITDFGHSKILGETS--LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS--LKDQIT 233 (322)
T ss_dssp ECCCTTCEECCCCH--HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSC--HHHHHH
T ss_pred EccCccceeccccc--ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHH--HHHHHH
Confidence 99999998765432 123457999999999873 56789999999999999999999999976543221 111111
Q ss_pred HHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 805 RVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 805 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
.......... .......+.+++.+|++.||++||+++++++
T Consensus 234 ---~~~~~~~~~~---------~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 234 ---SGKYNFIPEV---------WAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp ---HTCCCCCHHH---------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ---hCccccCchh---------hhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 1111110000 0111246789999999999999999999986
No 215
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=1.7e-37 Score=353.46 Aligned_cols=200 Identities=22% Similarity=0.306 Sum_probs=173.9
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc------CCCcceeEEeEeeeCc
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV------RHRHLVALLGYCINGS 652 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~l~~~~~~~~ 652 (933)
..+|++.+.||+|+||.||+|.. .+++.||||++... ....+.+.+|+.+++.+ +|+||+++++++....
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~ 172 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE---KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRN 172 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETT
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc---cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCC
Confidence 46899999999999999999954 56899999999754 33456788888888887 5779999999999999
Q ss_pred eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCc--EEEec
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMR--AKVAD 730 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~--~kl~D 730 (933)
..++||||+. ++|.+++.... ...+++..++.++.||++||+|||+ ++|+||||||+|||++.++. +||+|
T Consensus 173 ~~~lv~e~~~-~~L~~~l~~~~---~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NILl~~~~~~~vkL~D 245 (429)
T 3kvw_A 173 HICMTFELLS-MNLYELIKKNK---FQGFSLPLVRKFAHSILQCLDALHK---NRIIHCDLKPENILLKQQGRSGIKVID 245 (429)
T ss_dssp EEEEEECCCC-CBHHHHHHHTT---TCCCCHHHHHHHHHHHHHHHHHHHH---HTEECSCCSGGGEEESSTTSCCEEECC
T ss_pred eEEEEEeccC-CCHHHHHHhcc---CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEccCCCcceEEee
Confidence 9999999995 69999986622 2458999999999999999999999 89999999999999999987 99999
Q ss_pred ccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCC
Q 002346 731 FGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMP 793 (933)
Q Consensus 731 fGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~ 793 (933)
||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus 246 FG~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~ 304 (429)
T 3kvw_A 246 FGSSCYEHQR----VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDE 304 (429)
T ss_dssp CTTCEETTCC----CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred cccceecCCc----ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCH
Confidence 9999765432 2345799999999999999999999999999999999999999986543
No 216
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=1e-37 Score=353.40 Aligned_cols=264 Identities=21% Similarity=0.269 Sum_probs=202.8
Q ss_pred hcCCccCCccccCCCeEEEEEE-eCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC--------CCcceeEEeEee-
Q 002346 580 TDNFSEANILGRGGFGVVYGGE-LPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR--------HRHLVALLGYCI- 649 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~l~~~~~- 649 (933)
.++|++.+.||+|+||.||+|. ..+++.||||++... ....+.+.+|+.+++.++ |+||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~ 112 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA---EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKI 112 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC---CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceee
Confidence 4789999999999999999995 457899999999754 344578899999999995 788999999987
Q ss_pred ---eCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCC-CeEecCCCCCcEEecCCC-
Q 002346 650 ---NGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQ-SFIHRDLKPSNILIGDDM- 724 (933)
Q Consensus 650 ---~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dik~~Nill~~~~- 724 (933)
.+...++||||+ +++|.+++... ....+++.+++.++.||++||+|||+ + +|+||||||+|||++.++
T Consensus 113 ~~~~~~~~~lv~e~~-~~~l~~~~~~~---~~~~~~~~~~~~i~~qi~~aL~~lH~---~~givHrDikp~NIll~~~~~ 185 (397)
T 1wak_A 113 SGVNGTHICMVFEVL-GHHLLKWIIKS---NYQGLPLPCVKKIIQQVLQGLDYLHT---KCRIIHTDIKPENILLSVNEQ 185 (397)
T ss_dssp EETTEEEEEEEECCC-CCBHHHHHHHT---TTSCCCHHHHHHHHHHHHHHHHHHHH---TTCEECCCCSGGGEEECCCHH
T ss_pred cCCCCceEEEEEecc-CccHHHHHHhc---ccCCCCHHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHeeEeccch
Confidence 556789999999 67777777542 22568999999999999999999998 7 999999999999999775
Q ss_pred ------------------------------------------------cEEEecccccccCCCCCceeecccccccCccc
Q 002346 725 ------------------------------------------------RAKVADFGLVKNAPDGKYSVETRLAGTFGYLA 756 (933)
Q Consensus 725 ------------------------------------------------~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~a 756 (933)
.+||+|||+++..... .....||+.|+|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~----~~~~~gt~~y~a 261 (397)
T 1wak_A 186 YIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH----FTEDIQTRQYRS 261 (397)
T ss_dssp HHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC----SCSCCSCGGGCC
T ss_pred hhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc----CccCCCCCcccC
Confidence 7999999999866432 234579999999
Q ss_pred ccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCc-----------ccCC------
Q 002346 757 PEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPK-----------AIDP------ 819 (933)
Q Consensus 757 PE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~d~------ 819 (933)
||++.+..++.++|||||||++|||++|+.||......................+..+. .+..
T Consensus 262 PE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 341 (397)
T 1wak_A 262 LEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKH 341 (397)
T ss_dssp HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSS
T ss_pred ChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCcccccc
Confidence 99999989999999999999999999999999865433211111111111110111100 0000
Q ss_pred --CCC-C---------ChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 820 --NLN-L---------DEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 820 --~l~-~---------~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
... . ..........+.+++.+||+.||++||+++|+++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 342 ITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp CCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred ccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 000 0 0112345567889999999999999999999986
No 217
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=344.56 Aligned_cols=258 Identities=24% Similarity=0.317 Sum_probs=189.1
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC-CCcceeEEeEee--------
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR-HRHLVALLGYCI-------- 649 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~-------- 649 (933)
..+|++.+.||+|+||.||+|.. .+++.||||++... .....+.+.+|+.++.++. ||||+++++++.
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~ 104 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN--EEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDT 104 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES--SHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTT
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC--chHHHHHHHHHHHHHHHhccCCChhhcccccccccccccc
Confidence 35899999999999999999965 57899999998654 3455678999999999996 999999999984
Q ss_pred eCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCC--eEecCCCCCcEEecCCCcEE
Q 002346 650 NGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQS--FIHRDLKPSNILIGDDMRAK 727 (933)
Q Consensus 650 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dik~~Nill~~~~~~k 727 (933)
.....++||||+. |+|.+++..... ..++++.+++.++.|++.||+|||+ .+ |+||||||+||+++.++.+|
T Consensus 105 ~~~~~~lv~e~~~-g~L~~~l~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~---~~~~ivH~Dikp~NIl~~~~~~~k 178 (337)
T 3ll6_A 105 GQAEFLLLTELCK-GQLVEFLKKMES--RGPLSCDTVLKIFYQTCRAVQHMHR---QKPPIIHRDLKVENLLLSNQGTIK 178 (337)
T ss_dssp SSEEEEEEEECCS-EEHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHHHHHHT---SSSCCBCCCCCGGGCEECTTSCEE
T ss_pred CCceEEEEEEecC-CCHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHh---CCCCEEEccCCcccEEECCCCCEE
Confidence 3445789999995 799999865332 2469999999999999999999998 77 99999999999999999999
Q ss_pred EecccccccCCCCCcee-----------ecccccccCccccccc---CCCCCCCccchHhHHHHHHHHHcCCCCCCCCCC
Q 002346 728 VADFGLVKNAPDGKYSV-----------ETRLAGTFGYLAPEYA---ATGRVTTKIDVYAFGVVLMETITGRKALDDTMP 793 (933)
Q Consensus 728 l~DfGla~~~~~~~~~~-----------~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~ 793 (933)
|+|||+++......... .....||+.|+|||++ .+..++.++||||||+++|||++|+.||.....
T Consensus 179 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~ 258 (337)
T 3ll6_A 179 LCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAK 258 (337)
T ss_dssp BCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-----
T ss_pred EecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhH
Confidence 99999998665432111 1134689999999998 566789999999999999999999999975322
Q ss_pred chhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhc
Q 002346 794 DDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQW 866 (933)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~ 866 (933)
.. .... ....+ ..... ...+.+++.+||+.||++||++.|+++.|+.+....
T Consensus 259 ~~------~~~~----~~~~~--~~~~~---------~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~ 310 (337)
T 3ll6_A 259 LR------IVNG----KYSIP--PHDTQ---------YTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAAR 310 (337)
T ss_dssp -----------------CCCC--TTCCS---------SGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred HH------hhcC----cccCC--ccccc---------chHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence 11 0000 00000 00001 123668999999999999999999999998886543
No 218
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=4.1e-38 Score=345.34 Aligned_cols=260 Identities=20% Similarity=0.350 Sum_probs=201.8
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEEe
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 659 (933)
.++|++.+.||+|+||.||+|.... .||+|++..........+.+.+|+.++++++||||+++++++.+....++|||
T Consensus 32 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e 109 (319)
T 2y4i_B 32 FEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITS 109 (319)
T ss_dssp CSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECB
T ss_pred HHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEee
Confidence 5789999999999999999998743 59999998765444555678899999999999999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCC
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPD 739 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~ 739 (933)
|+++++|.+++... ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++ ++.+||+|||+++....
T Consensus 110 ~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~ 181 (319)
T 2y4i_B 110 LCKGRTLYSVVRDA----KIVLDVNKTRQIAQEIVKGMGYLHA---KGILHKDLKSKNVFYD-NGKVVITDFGLFSISGV 181 (319)
T ss_dssp CCCSEEHHHHTTSS----CCCCCSHHHHHHHHHHHHHHHHHHH---TTCCCCCCCSTTEEEC---CCEECCCSCCC----
T ss_pred cccCCcHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCChhhEEEe-CCCEEEeecCCcccccc
Confidence 99999999999541 2468999999999999999999999 8999999999999998 67999999999875432
Q ss_pred CC----ceeecccccccCcccccccCC---------CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHH
Q 002346 740 GK----YSVETRLAGTFGYLAPEYAAT---------GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRV 806 (933)
Q Consensus 740 ~~----~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~ 806 (933)
.. ........|++.|+|||++.. ..++.++||||||+++|||++|+.||........ . ...
T Consensus 182 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~---~---~~~ 255 (319)
T 2y4i_B 182 LQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAI---I---WQM 255 (319)
T ss_dssp ------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHH---H---HHH
T ss_pred ccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH---H---HHh
Confidence 11 111233468999999999864 3578899999999999999999999976533211 1 111
Q ss_pred hhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhc
Q 002346 807 LISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQW 866 (933)
Q Consensus 807 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~ 866 (933)
. ....+........ ..+.+++.+||+.+|++||++.++++.|+.+.+..
T Consensus 256 ~--~~~~~~~~~~~~~---------~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~ 304 (319)
T 2y4i_B 256 G--TGMKPNLSQIGMG---------KEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRN 304 (319)
T ss_dssp H--TTCCCCCCCSSCC---------TTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC----
T ss_pred c--cCCCCCCCcCCCC---------HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhh
Confidence 1 1111111111111 24779999999999999999999999998876543
No 219
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=2.4e-37 Score=340.94 Aligned_cols=262 Identities=18% Similarity=0.266 Sum_probs=202.5
Q ss_pred cCCccCCccccCCCeEEEEEE-eCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC-CCcceeEEeEeee--CceeEE
Q 002346 581 DNFSEANILGRGGFGVVYGGE-LPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR-HRHLVALLGYCIN--GSERLL 656 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~--~~~~~l 656 (933)
++|++.+.||+|+||.||+|. ..+++.||||++... ..+.+.+|+.++++++ ||||+++++++.. ....++
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~l 110 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-----KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPAL 110 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-----CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc-----chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEE
Confidence 689999999999999999995 467999999998643 2467999999999997 9999999999987 667899
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCC-cEEEecccccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDM-RAKVADFGLVK 735 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~-~~kl~DfGla~ 735 (933)
||||+++++|.+++. .+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++ .+||+|||+++
T Consensus 111 v~e~~~~~~l~~~~~--------~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~ 179 (330)
T 3nsz_A 111 VFEHVNNTDFKQLYQ--------TLTDYDIRFYMYEILKALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE 179 (330)
T ss_dssp EEECCCCCCHHHHGG--------GCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred EEeccCchhHHHHHH--------hCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEEcCCCCEEEEEeCCCce
Confidence 999999999999983 38899999999999999999999 8999999999999999777 89999999998
Q ss_pred cCCCCCceeecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHH--------
Q 002346 736 NAPDGKYSVETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRV-------- 806 (933)
Q Consensus 736 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~-------- 806 (933)
....... .....|++.|+|||++.+ ..++.++|||||||++|||++|+.||........ .+.......
T Consensus 180 ~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~-~l~~~~~~~~~~~~~~~ 256 (330)
T 3nsz_A 180 FYHPGQE--YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYD-QLVRIAKVLGTEDLYDY 256 (330)
T ss_dssp ECCTTCC--CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHH-HHHHHHHHHCHHHHHHH
T ss_pred EcCCCCc--cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHH-HHHHHHHhcCCchhhhH
Confidence 6654332 234578999999999876 6789999999999999999999999965443211 111111000
Q ss_pred -hhccCCCCc------------ccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 807 -LISKENIPK------------AIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 807 -~~~~~~~~~------------~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
......... ....... ..........+.+++.+||+.||++|||++|+++ ++|..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~------hp~f~ 324 (330)
T 3nsz_A 257 IDKYNIELDPRFNDILGRHSRKRWERFVH-SENQHLVSPEALDFLDKLLRYDHQSRLTAREAME------HPYFY 324 (330)
T ss_dssp HHHTTCCCCTHHHHHHCCCCCCCGGGGCC-TTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT------SGGGT
T ss_pred HHHhccccccchhhhhhhccccchhhhcc-ccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc------CccHh
Confidence 000000000 0000000 0011112356789999999999999999999986 66664
No 220
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=7.9e-37 Score=332.38 Aligned_cols=257 Identities=26% Similarity=0.436 Sum_probs=197.0
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeee-------
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCIN------- 650 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------- 650 (933)
..++|++.+.||+|+||.||+|.. .+++.||||++... ....+.+.+|+.++++++||||+++++++.+
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 80 (303)
T 1zy4_A 4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT---EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKP 80 (303)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE---HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-
T ss_pred ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc---HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhh
Confidence 457899999999999999999965 57999999998653 3456789999999999999999999998865
Q ss_pred ------CceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCC
Q 002346 651 ------GSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDM 724 (933)
Q Consensus 651 ------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~ 724 (933)
....++||||+++++|.+++... ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++
T Consensus 81 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dlkp~Nil~~~~~ 153 (303)
T 1zy4_A 81 MTAVKKKSTLFIQMEYCENGTLYDLIHSE----NLNQQRDEYWRLFRQILEALSYIHS---QGIIHRDLKPMNIFIDESR 153 (303)
T ss_dssp -----CEEEEEEEEECCCSCBHHHHHHHS----CGGGCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTS
T ss_pred hcccccCCceEEEEecCCCCCHHHhhhcc----ccccchHHHHHHHHHHHHHHHHHHh---CCeecccCCHHhEEEcCCC
Confidence 45678999999999999999652 2457889999999999999999999 8999999999999999999
Q ss_pred cEEEecccccccCCCCC-------------ceeecccccccCcccccccCCC-CCCCccchHhHHHHHHHHHcCCCCCCC
Q 002346 725 RAKVADFGLVKNAPDGK-------------YSVETRLAGTFGYLAPEYAATG-RVTTKIDVYAFGVVLMETITGRKALDD 790 (933)
Q Consensus 725 ~~kl~DfGla~~~~~~~-------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~~l~elltG~~p~~~ 790 (933)
.+||+|||+++...... ........|++.|+|||++.+. .++.++||||||+++|||++ ||..
T Consensus 154 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~ 230 (303)
T 1zy4_A 154 NVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFST 230 (303)
T ss_dssp CEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSS
T ss_pred CEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCC
Confidence 99999999988654321 1112345789999999998754 68999999999999999998 4432
Q ss_pred CCCchhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 791 TMPDDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
. .+. ..............+..++.. ....+.+++.+|++.||++||++.++++ ++|..
T Consensus 231 ~--~~~---~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~li~~~l~~dp~~Rps~~~ll~------h~~~~ 288 (303)
T 1zy4_A 231 G--MER---VNILKKLRSVSIEFPPDFDDN---------KMKVEKKIIRLLIDHDPNKRPGARTLLN------SGWLP 288 (303)
T ss_dssp H--HHH---HHHHHHHHSTTCCCCTTCCTT---------TSHHHHHHHHHHTCSSGGGSCCHHHHHH------SSCSC
T ss_pred c--hhH---HHHHHhccccccccCcccccc---------chHHHHHHHHHHHhcCcccCcCHHHHhC------CCCcC
Confidence 1 111 112222222122222222211 1235779999999999999999999987 66664
No 221
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=4.1e-37 Score=338.49 Aligned_cols=272 Identities=23% Similarity=0.337 Sum_probs=205.0
Q ss_pred HhcCCccCCccccCCCeEEEEEEe--CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc---CCCcceeEEeEee----
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL--PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV---RHRHLVALLGYCI---- 649 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~---- 649 (933)
+.++|++.+.||+|+||.||+|.. .+|+.||+|++............+.+|+.+++.+ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 457899999999999999999976 4688999999876543333334566777777766 8999999999987
Q ss_pred -eCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEE
Q 002346 650 -NGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKV 728 (933)
Q Consensus 650 -~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl 728 (933)
.....++||||++ |+|.+++.... ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~---~gi~H~dlkp~Nili~~~~~~kl 161 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVP---EPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKL 161 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSC---TTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEE
T ss_pred CCCceEEEEEecCC-CCHHHHHHhcc---cCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCCHHHeEEcCCCCEEE
Confidence 4567899999997 69999996632 2458999999999999999999999 89999999999999999999999
Q ss_pred ecccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhh
Q 002346 729 ADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLI 808 (933)
Q Consensus 729 ~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~ 808 (933)
+|||+++...... ......|++.|+|||++.+..++.++||||||+++|||++|+.||......+. +.. +.....
T Consensus 162 ~Dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~~~-i~~~~~ 236 (326)
T 1blx_A 162 ADFGLARIYSFQM--ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQ--LGK-ILDVIG 236 (326)
T ss_dssp CSCCSCCCCCGGG--GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH--HHH-HHHHHC
T ss_pred ecCcccccccCCC--CccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHH--HHH-HHHHcC
Confidence 9999987654322 22345789999999999988999999999999999999999999986543221 111 111110
Q ss_pred --ccCCCCccc-------CCCC--CCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 809 --SKENIPKAI-------DPNL--NLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 809 --~~~~~~~~~-------d~~l--~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
....++... .... ............+.+++.+||+.||++||++.|+++ ++|..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~------hp~~~ 301 (326)
T 1blx_A 237 LPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS------HPYFQ 301 (326)
T ss_dssp CCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT------SGGGT
T ss_pred CCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc------Ccccc
Confidence 000111000 0000 000000112245779999999999999999999986 66654
No 222
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=6.4e-37 Score=330.35 Aligned_cols=256 Identities=24% Similarity=0.335 Sum_probs=207.5
Q ss_pred HHHHhcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCcee
Q 002346 576 LRQVTDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSER 654 (933)
Q Consensus 576 l~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 654 (933)
.....++|++.+.||+|+||.||+|... +++.||+|++..........+.+.+|+.++++++||||+++++++......
T Consensus 17 ~~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~ 96 (287)
T 2wei_A 17 QGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSF 96 (287)
T ss_dssp THHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEE
T ss_pred HHHHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeE
Confidence 4556789999999999999999999664 789999999987655556678899999999999999999999999999999
Q ss_pred EEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCC---CcEEEecc
Q 002346 655 LLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDD---MRAKVADF 731 (933)
Q Consensus 655 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~---~~~kl~Df 731 (933)
++||||+++++|.+++... ..+++.+++.++.|+++||+|||+ ++|+||||||+||+++.+ +.+||+||
T Consensus 97 ~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIlv~~~~~~~~~kL~Df 168 (287)
T 2wei_A 97 YIVGELYTGGELFDEIIKR-----KRFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDF 168 (287)
T ss_dssp EEEECCCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEECST
T ss_pred EEEEEccCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCChhhEEEecCCCcccEEEecc
Confidence 9999999999999988652 458999999999999999999999 899999999999999764 46999999
Q ss_pred cccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccC
Q 002346 732 GLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKE 811 (933)
Q Consensus 732 Gla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~ 811 (933)
|++........ .....|++.|+|||.+.+ .++.++||||||+++|||++|+.||......+ .. ........
T Consensus 169 g~~~~~~~~~~--~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~---~~---~~~~~~~~ 239 (287)
T 2wei_A 169 GLSTCFQQNTK--MKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD---IL---KRVETGKY 239 (287)
T ss_dssp TGGGTBCCCSS--CSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH---HHHHHCCC
T ss_pred CcceeecCCCc--cccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHH---HH---HHHHcCCC
Confidence 99986554321 223468999999998875 58999999999999999999999997653221 11 11111111
Q ss_pred CCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 812 NIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 812 ~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
........ .....+.+++.+|++.+|++||++.|+++
T Consensus 240 ~~~~~~~~---------~~~~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 240 AFDLPQWR---------TISDDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp CCCSGGGT---------TSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred CCCchhhh---------hcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence 11100001 11245779999999999999999999987
No 223
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.3e-37 Score=367.65 Aligned_cols=382 Identities=19% Similarity=0.177 Sum_probs=270.2
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSL 144 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 144 (933)
.+++.|+|++|++++..+..|.++++|++|+|++|.|++++| .|.++++|++|+|++|.++++++..|+++++|++|+|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 579999999999998888899999999999999999999888 7999999999999999999998899999999999999
Q ss_pred cCCCCCCCCCCCccccCCccCCeeeccCcccCC-CCChhhcCCCCCCEEEccCCcCCCCCCcccccc-------------
Q 002346 145 SDNPNLAPWPFPNELTKSTSLTTLYMDNANIFG-LIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKS------------- 210 (933)
Q Consensus 145 s~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~------------- 210 (933)
++|.+.. ..+..++++++|++|+|++|.+.+ .+|..|+++++|++|+|++|++++..|..+...
T Consensus 112 ~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 112 VETKLAS--LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp TTSCCCC--SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred cCCcccc--ccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 9999988 344779999999999999999987 569999999999999999999997766655431
Q ss_pred ---------------ccchhhcccccCCc---------------------------------------------------
Q 002346 211 ---------------DIQNLWMNDQQLGL--------------------------------------------------- 224 (933)
Q Consensus 211 ---------------~l~~l~l~~n~~~~--------------------------------------------------- 224 (933)
.|+.|++.+|.+..
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 23444444443210
Q ss_pred -----ccc----------------------cccccCCccCcEEEecCCccCCCCC---------------------CCCC
Q 002346 225 -----SGT----------------------LDVLSGMTQLRQVWLHKNQFTGPIP---------------------DLSK 256 (933)
Q Consensus 225 -----~~~----------------------~~~l~~l~~L~~L~L~~N~l~~~~~---------------------~~~~ 256 (933)
.+. .+.+..+++|+.|++++|+++ .+| .+..
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~~~~~~~~ 348 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVA 348 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESCSSCEECCCCC
T ss_pred ccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc-ccccCCCCccceeeccCCcCccchhhcc
Confidence 000 002233344555555555542 222 2345
Q ss_pred CCCCCEEEccCCccccc--CcccccCCCCCCEEEccCccCccCCCCC--CCCccEEeccCCcCCCCCC-CCCCCCCchhh
Q 002346 257 CESLFDLSLRDNQLTGV--VPASVISLPALLNISLQNNKLQGPYPLF--PSKVQKVSLDHNNFCKNSS-DAGKPCDPQVT 331 (933)
Q Consensus 257 ~~~L~~L~L~~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~l~~n~~~~~~~-~~~~~~~~~~~ 331 (933)
+++|+.|+|++|++++. +|..+..+++|++|+|++|.+++..+.+ ..+|+.|++++|++.+..+ ..+..+. ...
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~ 427 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE-KLL 427 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT-TCC
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccc-cCC
Confidence 67777888888877755 3667777777777777777776644322 3466777777777666543 1111110 000
Q ss_pred hh-------H-hhhcccCCCcccc-CCCCCCCCCC-CCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccC
Q 002346 332 TL-------L-QIAGDMGYPAILS-DSWEGNNACD-GWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQN 401 (933)
Q Consensus 332 ~~-------~-~~~~~~~~~~~l~-~~~~~~~~~~-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N 401 (933)
.+ . ..+..+.....++ ..+.+|...+ .+|..+..+++|+.|+|++|++++.+|..|+++++|+.|+|++|
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 00 0 0011111222222 2334444444 36778888888888888888888888888888888888888888
Q ss_pred cccCCCCcccCCCCCcCEEeccCCcCcccCCCCCC---CcccccCCCCCCcCC
Q 002346 402 NLTGPIPDGLTKLASLQNLDVSNNNLSGKVPDFGS---NVKFTVSPGNPFIGT 451 (933)
Q Consensus 402 ~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p~~~~---~~~~~~~~~n~~~~~ 451 (933)
++++.+|..|..+++|+.|+|++|+|+..++.+.. .++...+.+|||.|.
T Consensus 508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp CCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred cCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccC
Confidence 88888888888888888888888888865554432 234445678888763
No 224
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=4.4e-37 Score=345.76 Aligned_cols=266 Identities=22% Similarity=0.317 Sum_probs=197.2
Q ss_pred HHHhcCCccCCccccCCCeEEEEEE-eCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeC----
Q 002346 577 RQVTDNFSEANILGRGGFGVVYGGE-LPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCING---- 651 (933)
Q Consensus 577 ~~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~---- 651 (933)
+...++|++.+.||+|+||.||+|. ..+|+.||||++..... ...+|+++++.++|||||++++++...
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~------~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~ 76 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR------YKNRELDIMKVLDHVNIIKLVDYFYTTGDEE 76 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT------SCCHHHHHHTTCCCTTBCCEEEEEEEC----
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc------hHHHHHHHHHHcCCCCccchhheeeecCccc
Confidence 3456789999999999999999995 46799999999875422 234799999999999999999998543
Q ss_pred ----------------------------------ceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHH
Q 002346 652 ----------------------------------SERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGV 697 (933)
Q Consensus 652 ----------------------------------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l 697 (933)
...++||||++ |+|.+.+...... ...+++..++.++.|+++||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~-~~~l~~~~~~~i~~qi~~aL 154 (383)
T 3eb0_A 77 PKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRS-GRSIPMNLISIYIYQLFRAV 154 (383)
T ss_dssp ---------------------------------CCEEEEEECCCS-EEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHH
Confidence 33789999997 5888888653332 35799999999999999999
Q ss_pred HHhhhccCCCeEecCCCCCcEEec-CCCcEEEecccccccCCCCCceeecccccccCcccccccCCC-CCCCccchHhHH
Q 002346 698 EYLHSLAQQSFIHRDLKPSNILIG-DDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATG-RVTTKIDVYAFG 775 (933)
Q Consensus 698 ~~LH~~~~~~ivH~Dik~~Nill~-~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG 775 (933)
+|||+ .+|+||||||+||+++ .++.+||+|||+++....... .....||+.|+|||++.+. .++.++||||+|
T Consensus 155 ~~LH~---~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG 229 (383)
T 3eb0_A 155 GFIHS---LGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP--SVAYICSRFYRAPELMLGATEYTPSIDLWSIG 229 (383)
T ss_dssp HHHHT---TTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC--CCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHH
T ss_pred HHHHH---CcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC--CcCcccCCCccCHHHhcCCCCCCcchhhhhHH
Confidence 99998 8999999999999998 688999999999986654332 2345789999999988764 589999999999
Q ss_pred HHHHHHHcCCCCCCCCCCchhhHHHHHHHHHh--------hccCCCCcccCCCCCCChh----hHHHHHHHHHHHHHccc
Q 002346 776 VVLMETITGRKALDDTMPDDRAHLVTWFRRVL--------ISKENIPKAIDPNLNLDEE----TIESIYRVAELAGHCTA 843 (933)
Q Consensus 776 ~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~d~~l~~~~~----~~~~~~~~~~li~~cl~ 843 (933)
|++|||++|+.||......+. +...+...- .......+..-+....... .......+.+++.+||+
T Consensus 230 ~il~ell~g~~pf~~~~~~~~--~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~ 307 (383)
T 3eb0_A 230 CVFGELILGKPLFSGETSIDQ--LVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILR 307 (383)
T ss_dssp HHHHHHHHSSCSSCCSSHHHH--HHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCCCCCChHHH--HHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHcc
Confidence 999999999999987543222 111111000 0000000000011110000 00122457899999999
Q ss_pred CCCCCCCCHHHHHH
Q 002346 844 REPQQRPDMGHAVN 857 (933)
Q Consensus 844 ~~P~~RPs~~evl~ 857 (933)
.||++|||+.|+++
T Consensus 308 ~dP~~R~t~~e~l~ 321 (383)
T 3eb0_A 308 YEPDLRINPYEAMA 321 (383)
T ss_dssp SSGGGSCCHHHHHT
T ss_pred CChhhCCCHHHHhc
Confidence 99999999999986
No 225
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=1.4e-37 Score=347.57 Aligned_cols=279 Identities=19% Similarity=0.270 Sum_probs=204.8
Q ss_pred ecHHHHHHHhcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCC---------chhHHHHHHHHHHHHhcCCCcc
Q 002346 571 ISIEVLRQVTDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMG---------NKGLSEFQAEIAVLTKVRHRHL 641 (933)
Q Consensus 571 ~~~~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~---------~~~~~~~~~E~~~l~~l~h~ni 641 (933)
....++..+.++|++.+.||+|+||.||+|...+|+.||||++...... ....+.+.+|+.++++++||||
T Consensus 12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i 91 (362)
T 3pg1_A 12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNI 91 (362)
T ss_dssp HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTB
T ss_pred HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCc
Confidence 3467788899999999999999999999998888999999998764322 1224789999999999999999
Q ss_pred eeEEeEeee-----CceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCC
Q 002346 642 VALLGYCIN-----GSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPS 716 (933)
Q Consensus 642 v~l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~ 716 (933)
+++++++.. ....++||||++ |+|.+++... ...+++..++.++.|+++||+|||+ ++|+||||||+
T Consensus 92 v~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~ 163 (362)
T 3pg1_A 92 LGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQ----RIVISPQHIQYFMYHILLGLHVLHE---AGVVHRDLHPG 163 (362)
T ss_dssp CCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCT----TSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGG
T ss_pred cceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHHH---CcCEecCCChH
Confidence 999999854 336799999997 6888888641 2468999999999999999999999 89999999999
Q ss_pred cEEecCCCcEEEecccccccCCCCCceeecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCCCCch
Q 002346 717 NILIGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDTMPDD 795 (933)
Q Consensus 717 Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~ 795 (933)
||+++.++.+||+|||+++...... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......+
T Consensus 164 NIl~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~ 241 (362)
T 3pg1_A 164 NILLADNNDITICDFNLAREDTADA--NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYN 241 (362)
T ss_dssp GEEECTTCCEEECCTTC-----------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred HEEEcCCCCEEEEecCccccccccc--ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHH
Confidence 9999999999999999997544322 2234578999999999876 678999999999999999999999998654322
Q ss_pred hhHHHHHHHHHhhcc--------------CCCCcccCCCCCCC--hhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002346 796 RAHLVTWFRRVLISK--------------ENIPKAIDPNLNLD--EETIESIYRVAELAGHCTAREPQQRPDMGHAVNVL 859 (933)
Q Consensus 796 ~~~~~~~~~~~~~~~--------------~~~~~~~d~~l~~~--~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L 859 (933)
... ... ...... ..+........... .........+.+++.+||+.||++||++.|+++
T Consensus 242 ~~~--~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~-- 316 (362)
T 3pg1_A 242 QLN--KIV-EVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR-- 316 (362)
T ss_dssp HHH--HHH-HHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT--
T ss_pred HHH--HHH-HHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc--
Confidence 111 111 000000 00000000000000 000111245789999999999999999999986
Q ss_pred hhhhhhcCC
Q 002346 860 GPLVEQWKP 868 (933)
Q Consensus 860 ~~~~~~~~~ 868 (933)
++|..
T Consensus 317 ----hp~f~ 321 (362)
T 3pg1_A 317 ----HPYFE 321 (362)
T ss_dssp ----SGGGT
T ss_pred ----Cchhh
Confidence 66654
No 226
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.7e-37 Score=338.87 Aligned_cols=254 Identities=24% Similarity=0.399 Sum_probs=197.7
Q ss_pred HHHhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCcceeEEeEeee----
Q 002346 577 RQVTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVALLGYCIN---- 650 (933)
Q Consensus 577 ~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~---- 650 (933)
....++|++.+.||+|+||.||+|.. .+++.||||++.... ...+.+.+|+.+++++ +||||+++++++..
T Consensus 20 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~ 96 (326)
T 2x7f_A 20 RDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG---DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP 96 (326)
T ss_dssp CCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS---STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--
T ss_pred cCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc---ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCc
Confidence 34467899999999999999999965 578999999987543 2346889999999999 79999999999976
Q ss_pred --CceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEE
Q 002346 651 --GSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKV 728 (933)
Q Consensus 651 --~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl 728 (933)
....++||||+++++|.+++.... ...+++..++.++.|++.||+|||+ ++|+||||||+||+++.++.+||
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~kl 170 (326)
T 2x7f_A 97 GMDDQLWLVMEFCGAGSVTDLIKNTK---GNTLKEEWIAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTENAEVKL 170 (326)
T ss_dssp CCCCEEEEEEECCTTEEHHHHHHHSG---GGCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTCCEEE
T ss_pred cccceEEEEEEcCCCCcHHHHHHhcc---cCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCcHHHEEEcCCCCEEE
Confidence 467899999999999999997632 2468999999999999999999999 89999999999999999999999
Q ss_pred ecccccccCCCCCceeecccccccCcccccccC-----CCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHH
Q 002346 729 ADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAA-----TGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWF 803 (933)
Q Consensus 729 ~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~ 803 (933)
+|||++....... .......|++.|+|||++. +..++.++||||||+++|||++|+.||......... .
T Consensus 171 ~Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~---~-- 244 (326)
T 2x7f_A 171 VDFGVSAQLDRTV-GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRAL---F-- 244 (326)
T ss_dssp CCCTTTC--------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHH---H--
T ss_pred eeCcCceecCcCc-cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHH---H--
Confidence 9999987654322 1223457999999999986 567899999999999999999999999765432211 1
Q ss_pred HHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 804 RRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 804 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
... ....+........ ..+.+++.+||+.||++||+++++++
T Consensus 245 -~~~--~~~~~~~~~~~~~---------~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 245 -LIP--RNPAPRLKSKKWS---------KKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp -HHH--HSCCCCCSCSCSC---------HHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred -Hhh--cCccccCCccccC---------HHHHHHHHHHhccChhhCCCHHHHhh
Confidence 111 1111111111111 35779999999999999999999986
No 227
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=6.7e-37 Score=332.22 Aligned_cols=254 Identities=26% Similarity=0.364 Sum_probs=204.6
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC-------chhHHHHHHHHHHHHhcC-CCcceeEEeEee
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG-------NKGLSEFQAEIAVLTKVR-HRHLVALLGYCI 649 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~-------~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~ 649 (933)
..++|++.+.||+|+||.||+|.. .+|+.||||++...... ....+.+.+|+.+++++. ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 457899999999999999999965 46899999998765311 123467889999999995 999999999999
Q ss_pred eCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEe
Q 002346 650 NGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVA 729 (933)
Q Consensus 650 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~ 729 (933)
.+...++||||+++++|.+++.. ...+++.+++.++.|++.||+|||+ ++|+||||||+||+++.++.+||+
T Consensus 95 ~~~~~~lv~e~~~~~~L~~~l~~-----~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~ 166 (298)
T 1phk_A 95 TNTFFFLVFDLMKKGELFDYLTE-----KVTLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLT 166 (298)
T ss_dssp CSSEEEEEEECCTTCBHHHHHHH-----HSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEEC
T ss_pred cCCeEEEEEeccCCCcHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEEcCCCcEEEe
Confidence 99999999999999999999965 2468999999999999999999999 899999999999999999999999
Q ss_pred cccccccCCCCCceeecccccccCcccccccC------CCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHH
Q 002346 730 DFGLVKNAPDGKYSVETRLAGTFGYLAPEYAA------TGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWF 803 (933)
Q Consensus 730 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~ 803 (933)
|||++........ .....|++.|+|||++. ...++.++||||||+++|||++|+.||....... ..
T Consensus 167 dfg~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~---~~--- 238 (298)
T 1phk_A 167 DFGFSCQLDPGEK--LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQML---ML--- 238 (298)
T ss_dssp CCTTCEECCTTCC--BCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH---
T ss_pred cccchhhcCCCcc--cccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHH---HH---
Confidence 9999986654322 23457899999999884 4568899999999999999999999997643221 11
Q ss_pred HHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 804 RRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 804 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
..........+. +. .......+.+++.+|++.||++||++.|+++
T Consensus 239 ~~~~~~~~~~~~---~~------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 239 RMIMSGNYQFGS---PE------WDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp HHHHHTCCCCCT---TT------GGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred HHHhcCCcccCc---cc------ccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 111111111110 00 0112245789999999999999999999976
No 228
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=1.8e-37 Score=343.48 Aligned_cols=255 Identities=24% Similarity=0.361 Sum_probs=199.8
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHH-HHhcCCCcceeEEeEeeeCceeEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAV-LTKVRHRHLVALLGYCINGSERLL 656 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~l 656 (933)
..++|++.+.||+|+||.||+|.. .+|+.||||++...... ....++..|+.+ ++.++||||+++++++..++..++
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~l 127 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNS-QEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWI 127 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCC-HHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEE
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCc-HHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEE
Confidence 357899999999999999999965 57999999999876433 334555566555 777899999999999999999999
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCC-CeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQ-SFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
||||+++ +|.+++..... ....+++..++.++.|+++||+|||+ + +|+||||||+||+++.++.+||+|||+++
T Consensus 128 v~e~~~~-~L~~~l~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~ 202 (340)
T 3an0_A 128 CMELMDT-SLDKFYKQVID-KGQTIPEDILGKIAVSIVKALEHLHS---KLSVIHRDVKPSNVLINALGQVKMCDFGISG 202 (340)
T ss_dssp EECCCSE-EHHHHHHHHHH-TSCCCCHHHHHHHHHHHHHHHHHHHH---HTCCCCCSCCSTTEEECSTTCEEECCCSHHH
T ss_pred EHHHhhC-cHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHhh---cCCeecCCCCHHHEEECCCCCEEEeeCCCce
Confidence 9999975 99998865322 23579999999999999999999998 5 99999999999999999999999999998
Q ss_pred cCCCCCceeecccccccCcccccccC----CCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccC
Q 002346 736 NAPDGKYSVETRLAGTFGYLAPEYAA----TGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKE 811 (933)
Q Consensus 736 ~~~~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~ 811 (933)
...... ......||+.|+|||++. ...++.++|||||||++|||++|+.||........ . +.......
T Consensus 203 ~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~~-~----~~~~~~~~- 274 (340)
T 3an0_A 203 YLVDSV--AKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQ-Q----LKQVVEEP- 274 (340)
T ss_dssp HHSCHH--HHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHH-H----HHHHHHSC-
T ss_pred eccccc--ccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchHH-H----HHHHhcCC-
Confidence 654321 123357999999999964 34789999999999999999999999976432111 1 11111111
Q ss_pred CCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 812 NIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 812 ~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
.+..... ....++.+++.+||+.||++||++.|+++
T Consensus 275 -~~~~~~~---------~~~~~~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 275 -SPQLPAD---------KFSAEFVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp -CCCCCGG---------GSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred -CCCCCcc---------cCCHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 1111000 11245789999999999999999999976
No 229
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=8.2e-37 Score=340.11 Aligned_cols=271 Identities=23% Similarity=0.330 Sum_probs=203.5
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeC-----c
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCING-----S 652 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~ 652 (933)
+.++|++.+.||+|+||.||+|.. .+|+.||||++.... ......++.+|+.++++++||||+++++++... .
T Consensus 9 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 87 (353)
T 2b9h_A 9 ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFD-KPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFN 87 (353)
T ss_dssp SCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCS-SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCC
T ss_pred cccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccc-cchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccc
Confidence 357899999999999999999965 468999999996542 344566788999999999999999999998754 6
Q ss_pred eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccc
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFG 732 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfG 732 (933)
..++||||++ ++|.+++.. ..+++.++..++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||
T Consensus 88 ~~~lv~e~~~-~~L~~~~~~------~~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg 157 (353)
T 2b9h_A 88 EVYIIQELMQ-TDLHRVIST------QMLSDDHIQYFIYQTLRAVKVLHG---SNVIHRDLKPSNLLINSNCDLKVCDFG 157 (353)
T ss_dssp CEEEEECCCS-EEHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCT
T ss_pred eEEEEEeccC-ccHHHHHhh------cCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEcCCCcEEEEecc
Confidence 7899999996 699999865 468999999999999999999999 899999999999999999999999999
Q ss_pred ccccCCCCCce---------eecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHH
Q 002346 733 LVKNAPDGKYS---------VETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTW 802 (933)
Q Consensus 733 la~~~~~~~~~---------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~ 802 (933)
+++........ ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......... ..
T Consensus 158 ~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~---~~ 234 (353)
T 2b9h_A 158 LARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQL---LL 234 (353)
T ss_dssp TCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH---HH
T ss_pred cccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHH---HH
Confidence 99865432211 1223578999999998754 67899999999999999999999999865432211 11
Q ss_pred HHHHhhccC--CCCccc------------C--CCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhc
Q 002346 803 FRRVLISKE--NIPKAI------------D--PNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQW 866 (933)
Q Consensus 803 ~~~~~~~~~--~~~~~~------------d--~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~ 866 (933)
+........ .....+ . +..............+.+++.+||+.||++||+++|+++ ++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~------hp~ 308 (353)
T 2b9h_A 235 IFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE------HPY 308 (353)
T ss_dssp HHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT------SGG
T ss_pred HHHHhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc------Ccc
Confidence 111110000 000000 0 000000000112345779999999999999999999986 666
Q ss_pred CCC
Q 002346 867 KPA 869 (933)
Q Consensus 867 ~~~ 869 (933)
...
T Consensus 309 ~~~ 311 (353)
T 2b9h_A 309 LQT 311 (353)
T ss_dssp GTT
T ss_pred ccc
Confidence 543
No 230
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=333.06 Aligned_cols=252 Identities=25% Similarity=0.389 Sum_probs=199.5
Q ss_pred HHhcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEE
Q 002346 578 QVTDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLL 656 (933)
Q Consensus 578 ~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 656 (933)
...++|++.+.||+|+||.||+|... +|+.||+|++.... ..+++.+|+.++++++||||+++++++......++
T Consensus 26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 101 (314)
T 3com_A 26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES----DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWI 101 (314)
T ss_dssp ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS----CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH----HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEE
Confidence 44678999999999999999999654 68999999987642 23678999999999999999999999999999999
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKN 736 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~ 736 (933)
||||+++++|.+++... ...+++.+++.++.|++.||+|||+ .+|+||||||+||+++.++.+||+|||++..
T Consensus 102 v~e~~~~~~L~~~~~~~----~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~ 174 (314)
T 3com_A 102 VMEYCGAGSVSDIIRLR----NKTLTEDEIATILQSTLKGLEYLHF---MRKIHRDIKAGNILLNTEGHAKLADFGVAGQ 174 (314)
T ss_dssp EEECCTTEEHHHHHHHH----TCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred EeecCCCCCHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHh---CCCcCCCcCHHHEEECCCCCEEEeecccchh
Confidence 99999999999998641 2568999999999999999999999 8999999999999999999999999999976
Q ss_pred CCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcc
Q 002346 737 APDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKA 816 (933)
Q Consensus 737 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (933)
...... ......|++.|+|||++.+..++.++||||||+++|||++|+.||......... . .... ...+.
T Consensus 175 ~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~---~---~~~~--~~~~~- 244 (314)
T 3com_A 175 LTDTMA-KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAI---F---MIPT--NPPPT- 244 (314)
T ss_dssp CBTTBS-CBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHH---H---HHHH--SCCCC-
T ss_pred hhhhcc-ccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHH---H---HHhc--CCCcc-
Confidence 544321 223457899999999999889999999999999999999999999765332111 1 1111 10000
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 817 IDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 817 ~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
+.. .......+.+++.+|++.||++||++.++++
T Consensus 245 ----~~~---~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 245 ----FRK---PELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp ----CSS---GGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ----cCC---cccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 000 0011245779999999999999999999976
No 231
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=3.2e-37 Score=335.39 Aligned_cols=252 Identities=23% Similarity=0.385 Sum_probs=198.2
Q ss_pred hcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
.++|++.+.||+|+||.||+|... +++.||+|++... .....+++.+|+.+++.++||||+++++++..++..++||
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 95 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETK--SEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMI 95 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEE
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCC--CHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEE
Confidence 578999999999999999999664 5899999998765 3445678999999999999999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAP 738 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~ 738 (933)
||+++++|.+++... ...+++.+++.++.|+++||+|||+ .+|+||||||+||+++.++.+||+|||++....
T Consensus 96 e~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 168 (302)
T 2j7t_A 96 EFCPGGAVDAIMLEL----DRGLTEPQIQVVCRQMLEALNFLHS---KRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNL 168 (302)
T ss_dssp ECCTTEEHHHHHHHH----TSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTSCEEECCCHHHHHHH
T ss_pred EeCCCCcHHHHHHhh----ccCCCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHHHEEECCCCCEEEEECCCCcccc
Confidence 999999999998652 2458999999999999999999999 899999999999999999999999999875322
Q ss_pred CCCceeecccccccCccccccc-----CCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCC
Q 002346 739 DGKYSVETRLAGTFGYLAPEYA-----ATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENI 813 (933)
Q Consensus 739 ~~~~~~~~~~~gt~~y~aPE~~-----~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (933)
... .......|++.|+|||++ ....++.++||||||+++|||++|+.||........ ....... ..
T Consensus 169 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~------~~~~~~~--~~ 239 (302)
T 2j7t_A 169 KTL-QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRV------LLKIAKS--DP 239 (302)
T ss_dssp HHH-HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHHHHHS--CC
T ss_pred ccc-cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHH------HHHHhcc--CC
Confidence 111 112234789999999988 466789999999999999999999999976543211 1111111 11
Q ss_pred CcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 814 PKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 814 ~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
+.... .......+.+++.+|++.||++||+++++++
T Consensus 240 ~~~~~--------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 240 PTLLT--------PSKWSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp CCCSS--------GGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred cccCC--------ccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 11100 0111245779999999999999999999976
No 232
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=3.7e-37 Score=367.74 Aligned_cols=260 Identities=24% Similarity=0.396 Sum_probs=206.6
Q ss_pred HhcCCccCCccccCCCeEEEEEEeC----CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCcee
Q 002346 579 VTDNFSEANILGRGGFGVVYGGELP----DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSER 654 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 654 (933)
..++|++.+.||+|+||.||+|... .+..||||++.... .....+.|.+|+.++++++||||+++++++. ++..
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~ 465 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCT-SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV 465 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTT-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSC
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccC-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCce
Confidence 3578999999999999999999653 25679999987542 3445678999999999999999999999985 4568
Q ss_pred EEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccc
Q 002346 655 LLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLV 734 (933)
Q Consensus 655 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla 734 (933)
++||||+++|+|.+++... ...+++..++.++.|+++||+|||+ ++|+||||||+|||++.++.+||+|||++
T Consensus 466 ~lv~E~~~~g~L~~~l~~~----~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDikp~NILl~~~~~vkL~DFG~a 538 (656)
T 2j0j_A 466 WIIMELCTLGELRSFLQVR----KFSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLS 538 (656)
T ss_dssp EEEEECCTTCBHHHHHHHT----TTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCCCC
T ss_pred EEEEEcCCCCcHHHHHHhc----cCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccchHhEEEeCCCCEEEEecCCC
Confidence 9999999999999999652 2458999999999999999999999 89999999999999999999999999999
Q ss_pred ccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHhhccCCC
Q 002346 735 KNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVLISKENI 813 (933)
Q Consensus 735 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (933)
+..............|++.|+|||++.+..++.++||||||+++|||++ |+.||......+ ....+ .. ....
T Consensus 539 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~---~~~~i---~~-~~~~ 611 (656)
T 2j0j_A 539 RYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND---VIGRI---EN-GERL 611 (656)
T ss_dssp CSCCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH---HHHHH---HH-TCCC
T ss_pred eecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHH---HHHHH---Hc-CCCC
Confidence 8765544333344567889999999988899999999999999999997 999997653322 11111 11 1111
Q ss_pred CcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhh
Q 002346 814 PKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQ 865 (933)
Q Consensus 814 ~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~ 865 (933)
.+.+.. ...+.+++.+||+.||++||++.++++.|+.+++.
T Consensus 612 --~~~~~~---------~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~ 652 (656)
T 2j0j_A 612 --PMPPNC---------PPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 652 (656)
T ss_dssp --CCCTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --CCCccc---------cHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence 111111 13577999999999999999999999999988654
No 233
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=8.8e-37 Score=339.64 Aligned_cols=258 Identities=21% Similarity=0.347 Sum_probs=198.1
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCce-----
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSE----- 653 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 653 (933)
.++|.+.+.||+|+||.||+|.. .+|+.||||++..........+++.+|+.+++.++||||+++++++.....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 46899999999999999999965 579999999998765455556789999999999999999999999987653
Q ss_pred -eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccc
Q 002346 654 -RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFG 732 (933)
Q Consensus 654 -~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfG 732 (933)
.++||||++ ++|.+++. ..+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||
T Consensus 103 ~~~lv~e~~~-~~l~~~~~-------~~~~~~~~~~i~~qi~~al~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg 171 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMG-------LKFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFG 171 (353)
T ss_dssp CCEEEEECCS-EEGGGTTT-------SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTCCEEECSTT
T ss_pred eEEEEecccc-CCHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEeECCCCcEEEeecc
Confidence 499999996 68888773 348999999999999999999999 899999999999999999999999999
Q ss_pred ccccCCCCCceeecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhcc-
Q 002346 733 LVKNAPDGKYSVETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISK- 810 (933)
Q Consensus 733 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~- 810 (933)
+++..... .....||+.|+|||++.+ ..++.++||||||+++|||++|+.||......+. ...+.......
T Consensus 172 ~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~---~~~i~~~~~~~~ 244 (353)
T 3coi_A 172 LARHADAE----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQ---LTQILKVTGVPG 244 (353)
T ss_dssp CTTC------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHH---HHHHHHHHCBCC
T ss_pred cccCCCCC----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHHhCCCC
Confidence 99865432 234578999999999876 6789999999999999999999999986543221 11111100000
Q ss_pred ----------------CCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 811 ----------------ENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 811 ----------------~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
..++....+.+. .........+.+++.+|++.||++||+++|+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 245 TEFVQKLNDKAAKSYIQSLPQTPRKDFT--QLFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp HHHHTTCSCHHHHHHHHTSCBCSSCCTT--TTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHhCcCCCCccHH--HhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 000000000000 000112346789999999999999999999986
No 234
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=5.4e-37 Score=340.87 Aligned_cols=267 Identities=20% Similarity=0.318 Sum_probs=206.7
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCch---------------hHHHHHHHHHHHHhcCCCcceeE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNK---------------GLSEFQAEIAVLTKVRHRHLVAL 644 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~---------------~~~~~~~E~~~l~~l~h~niv~l 644 (933)
.++|++.+.||+|+||.||+|.. +++.||||++........ ..+.+.+|+.++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 46899999999999999999988 999999999876532211 12789999999999999999999
Q ss_pred EeEeeeCceeEEEEeecCCCChhhHhhhc---ccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEec
Q 002346 645 LGYCINGSERLLVYEYMPRGTLAQHLFEW---HDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIG 721 (933)
Q Consensus 645 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~---~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~ 721 (933)
++++.+.+..++||||+++++|.+++... .......+++..++.++.|+++||+|||+ .++|+||||||+||+++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~--~~~i~H~dl~p~Nil~~ 186 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHN--EKNICHRDVKPSNILMD 186 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHH--TSCEECCCCCGGGEEEC
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhc--cCCEeecCCChHhEEEc
Confidence 99999999999999999999999983211 11223679999999999999999999996 37999999999999999
Q ss_pred CCCcEEEecccccccCCCCCceeecccccccCcccccccCCC-CCCC-ccchHhHHHHHHHHHcCCCCCCCCCCchhhHH
Q 002346 722 DDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATG-RVTT-KIDVYAFGVVLMETITGRKALDDTMPDDRAHL 799 (933)
Q Consensus 722 ~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~ 799 (933)
.++.+||+|||++...... ......|++.|+|||++.+. .++. ++||||||+++|||++|+.||....... ..
T Consensus 187 ~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--~~ 261 (348)
T 2pml_X 187 KNGRVKLSDFGESEYMVDK---KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLV--EL 261 (348)
T ss_dssp TTSCEEECCCTTCEECBTT---EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSH--HH
T ss_pred CCCcEEEeccccccccccc---cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHH--HH
Confidence 9999999999999865443 23456799999999999877 6666 9999999999999999999998654321 11
Q ss_pred HHHHHHHhhccCCCCcccC----CCCCC--ChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 800 VTWFRRVLISKENIPKAID----PNLNL--DEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~d----~~l~~--~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
...........+.... +.... ..........+.+++.+||+.||++||+++|+++
T Consensus 262 ---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 262 ---FNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp ---HHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred ---HHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 1122211111111100 00000 0000112346789999999999999999999986
No 235
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=5.8e-37 Score=333.90 Aligned_cols=253 Identities=21% Similarity=0.303 Sum_probs=198.7
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCC--chhHHHHHHHHHHHHhcCCCcceeEEeEee--eCce
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMG--NKGLSEFQAEIAVLTKVRHRHLVALLGYCI--NGSE 653 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~ 653 (933)
+.++|++.+.||+|+||.||++.. .+++.||+|++...... ....+.+.+|+.++++++||||+++++++. +...
T Consensus 3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 82 (305)
T 2wtk_C 3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQK 82 (305)
T ss_dssp --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---C
T ss_pred cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCe
Confidence 457899999999999999999965 46899999999765321 234578999999999999999999999984 4557
Q ss_pred eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccc
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGL 733 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGl 733 (933)
.++||||++++ |.+++.... ...+++.+++.++.|+++||+|||+ ++|+||||||+||+++.++.+||+|||+
T Consensus 83 ~~lv~e~~~~~-l~~~~~~~~---~~~~~~~~~~~~~~qi~~al~~LH~---~~i~H~dlkp~NIl~~~~~~~kl~dfg~ 155 (305)
T 2wtk_C 83 MYMVMEYCVCG-MQEMLDSVP---EKRFPVCQAHGYFCQLIDGLEYLHS---QGIVHKDIKPGNLLLTTGGTLKISALGV 155 (305)
T ss_dssp EEEEEECCSEE-HHHHHHHST---TCSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred EEEEehhccCC-HHHHHHhCc---ccccCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCcccEEEcCCCcEEeecccc
Confidence 89999999876 777775522 3568999999999999999999999 8999999999999999999999999999
Q ss_pred cccCCCCC-ceeecccccccCcccccccCCCC--CCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhcc
Q 002346 734 VKNAPDGK-YSVETRLAGTFGYLAPEYAATGR--VTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISK 810 (933)
Q Consensus 734 a~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~ 810 (933)
+....... ........|++.|+|||++.+.. ++.++||||||+++|||++|+.||....... .........
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~------~~~~i~~~~ 229 (305)
T 2wtk_C 156 AEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYK------LFENIGKGS 229 (305)
T ss_dssp CEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHH------HHHHHHHCC
T ss_pred ccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHH------HHHHHhcCC
Confidence 98654322 22233457999999999987643 4779999999999999999999997643211 111222111
Q ss_pred CCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 811 ENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 811 ~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
..++. .. ...+.+++.+|++.||++||+++|+++
T Consensus 230 ~~~~~----~~---------~~~l~~li~~~l~~dp~~Rps~~~ll~ 263 (305)
T 2wtk_C 230 YAIPG----DC---------GPPLSDLLKGMLEYEPAKRFSIRQIRQ 263 (305)
T ss_dssp CCCCS----SS---------CHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred CCCCC----cc---------CHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 11111 11 135779999999999999999999987
No 236
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=7.9e-38 Score=350.41 Aligned_cols=255 Identities=12% Similarity=0.095 Sum_probs=183.0
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccC-CchhHHHHHHHHHHHHhc--CCCcceeEE-------eEee
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKV--RHRHLVALL-------GYCI 649 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l--~h~niv~l~-------~~~~ 649 (933)
.+|++.+.||+|+||.||+|.. .+|+.||||++..... .....+.+.+|+.+++.+ +||||++++ +++.
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~ 141 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVA 141 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEE
T ss_pred eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhee
Confidence 4588999999999999999965 5789999999987653 234456778886555555 699988755 3443
Q ss_pred eC-----------------ceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHH------HHHHHHHHHHHHHhhhccCC
Q 002346 650 NG-----------------SERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQR------VTIALDVARGVEYLHSLAQQ 706 (933)
Q Consensus 650 ~~-----------------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~------~~i~~~i~~~l~~LH~~~~~ 706 (933)
.. ...++||||++ |+|.+++.... ..+.+..+ ..++.||++||+|||+ +
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~----~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~---~ 213 (371)
T 3q60_A 142 VQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD----FVYVFRGDEGILALHILTAQLIRLAANLQS---K 213 (371)
T ss_dssp ETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH----HSCCCCHHHHHHHHHHHHHHHHHHHHHHHH---T
T ss_pred cCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc----cccchhhhhhhhhHHHHHHHHHHHHHHHHH---C
Confidence 22 34799999998 89999997632 23455556 7888999999999999 8
Q ss_pred CeEecCCCCCcEEecCCCcEEEecccccccCCCCCceeecccccccCcccccccCC--CCCCCccchHhHHHHHHHHHcC
Q 002346 707 SFIHRDLKPSNILIGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAAT--GRVTTKIDVYAFGVVLMETITG 784 (933)
Q Consensus 707 ~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~SlG~~l~elltG 784 (933)
+|+||||||+|||++.++.+||+|||+++..... .....||+.|+|||++.+ ..++.++|||||||++|||++|
T Consensus 214 ~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg 289 (371)
T 3q60_A 214 GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTR----GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCL 289 (371)
T ss_dssp TEEETTCSGGGEEECTTSCEEECCGGGEEETTCE----EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHS
T ss_pred CCccCcCCHHHEEECCCCCEEEEecceeeecCCC----ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999866432 113467799999999987 6799999999999999999999
Q ss_pred CCCCCCCCCchhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 785 RKALDDTMPDDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 785 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
+.||....+..... ................. ........+.+++.+||+.||++||++.++++
T Consensus 290 ~~Pf~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 290 FLPFGLVTPGIKGS---------WKRPSLRVPGTDSLAFG-SCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME 352 (371)
T ss_dssp SCSTTBCCTTCTTC---------CCBCCTTSCCCCSCCCT-TSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred CCCCCCcCcccccc---------hhhhhhhhccccccchh-hccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 99998764322110 00000000000011000 00112246789999999999999999999975
No 237
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=1.1e-36 Score=332.85 Aligned_cols=253 Identities=22% Similarity=0.322 Sum_probs=199.4
Q ss_pred HhcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC--CCcceeEEeEeeeCceeEE
Q 002346 579 VTDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR--HRHLVALLGYCINGSERLL 656 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~l 656 (933)
..++|++.+.||+|+||.||++...+++.||||++..........+.+.+|++++.+++ ||||+++++++..+...++
T Consensus 26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 105 (313)
T 3cek_A 26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 105 (313)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEE
T ss_pred ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEE
Confidence 35789999999999999999998888999999999876555666788999999999997 5999999999999999999
Q ss_pred EEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccccccc
Q 002346 657 VYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKN 736 (933)
Q Consensus 657 v~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~ 736 (933)
||| +.+++|.+++.. ...+++.+++.++.|+++||+|||+ ++|+||||||+||++++ +.+||+|||+++.
T Consensus 106 v~e-~~~~~L~~~l~~-----~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~ 175 (313)
T 3cek_A 106 VME-CGNIDLNSWLKK-----KKSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIVD-GMLKLIDFGIANQ 175 (313)
T ss_dssp EEC-CCSEEHHHHHHH-----CSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEET-TEEEECCCSSSCC
T ss_pred EEe-cCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcccEEEEC-CeEEEeecccccc
Confidence 999 558899999975 2468999999999999999999999 89999999999999964 8999999999986
Q ss_pred CCCCCce-eecccccccCcccccccCC-----------CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHH
Q 002346 737 APDGKYS-VETRLAGTFGYLAPEYAAT-----------GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFR 804 (933)
Q Consensus 737 ~~~~~~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~ 804 (933)
....... ......|++.|+|||++.+ ..++.++||||||+++|||++|+.||........ ...
T Consensus 176 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~-----~~~ 250 (313)
T 3cek_A 176 MQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQIS-----KLH 250 (313)
T ss_dssp --------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHH-----HHH
T ss_pred ccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHH-----HHH
Confidence 5543221 2234579999999999865 4688899999999999999999999976533211 111
Q ss_pred HHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 805 RVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 805 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
...... ....+.... ...+.+++.+||+.||++||++.|+++
T Consensus 251 ~~~~~~--~~~~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~ell~ 292 (313)
T 3cek_A 251 AIIDPN--HEIEFPDIP---------EKDLQDVLKCCLKRDPKQRISIPELLA 292 (313)
T ss_dssp HHHCTT--SCCCCCCCS---------CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHhcc--cccCCcccc---------hHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 111111 111111111 135779999999999999999999986
No 238
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=9.6e-37 Score=346.58 Aligned_cols=262 Identities=24% Similarity=0.335 Sum_probs=194.5
Q ss_pred cCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeC------ce
Q 002346 581 DNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCING------SE 653 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~~ 653 (933)
.+|++.+.||+|+||.||+|.. .+|+.||||++.... ..+.+|+++++.++|||||++++++... ..
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~------~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~ 127 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK------RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVY 127 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT------TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc------hhHHHHHHHHHHcCCCCccceeeEEeccCCCCccee
Confidence 4688999999999999999976 469999999986542 1234799999999999999999998542 23
Q ss_pred eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCC-CcEEEeccc
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDD-MRAKVADFG 732 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~-~~~kl~DfG 732 (933)
.++||||+++ ++.+.+..... ....+++..++.++.||++||+|||+ ++|+||||||+|||++.+ +.+||+|||
T Consensus 128 ~~lv~e~~~~-~l~~~~~~~~~-~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NILl~~~~~~~kl~DFG 202 (420)
T 1j1b_A 128 LNLVLDYVPE-TVYRVARHYSR-AKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFG 202 (420)
T ss_dssp EEEEEECCCE-EHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred EEeehhcccc-cHHHHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChhhEEEeCCCCeEEeccch
Confidence 5799999975 77776654222 23579999999999999999999998 899999999999999965 578999999
Q ss_pred ccccCCCCCceeecccccccCcccccccCCC-CCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHH-----
Q 002346 733 LVKNAPDGKYSVETRLAGTFGYLAPEYAATG-RVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRV----- 806 (933)
Q Consensus 733 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~----- 806 (933)
+++....... .....||+.|+|||++.+. .++.++|||||||++|||++|+.||......+ .+...+...
T Consensus 203 ~a~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~--~l~~i~~~lg~p~~ 278 (420)
T 1j1b_A 203 SAKQLVRGEP--NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVD--QLVEIIKVLGTPTR 278 (420)
T ss_dssp TCEECCTTCC--CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHHHCSCCH
T ss_pred hhhhcccCCC--ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHHHhCCCCH
Confidence 9986654332 2345789999999998764 78999999999999999999999998754322 222222110
Q ss_pred ---hhccCCCCcccCCCCCCChh----hHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 807 ---LISKENIPKAIDPNLNLDEE----TIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 807 ---~~~~~~~~~~~d~~l~~~~~----~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
........+...+.+..... ......++.+++.+||+.||++||++.|+++
T Consensus 279 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 279 EQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp HHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 00011111111111110000 0011246789999999999999999999986
No 239
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=9.1e-37 Score=340.71 Aligned_cols=278 Identities=21% Similarity=0.289 Sum_probs=194.4
Q ss_pred HHHHHHhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCc
Q 002346 574 EVLRQVTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGS 652 (933)
Q Consensus 574 ~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 652 (933)
+......++|++.+.||+|+||.||+|.. .+|+.||||++.... ....++.+|++.++.++||||+++++++....
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~ 92 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP---RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLG 92 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT---TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEEC
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc---cccHHHHHHHHHHHhcCCCCcccHHHhhhccc
Confidence 34456678999999999999999999965 568999999986543 22346678888899999999999999986543
Q ss_pred e-------eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhh--hccCCCeEecCCCCCcEEecC-
Q 002346 653 E-------RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLH--SLAQQSFIHRDLKPSNILIGD- 722 (933)
Q Consensus 653 ~-------~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--~~~~~~ivH~Dik~~Nill~~- 722 (933)
. .++||||+++ +|.+.+..... ....+++..+..++.|++.|++||| + ++|+||||||+|||++.
T Consensus 93 ~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~~---~~ivH~Dlkp~NIll~~~ 167 (360)
T 3e3p_A 93 ERDRRDIYLNVVMEYVPD-TLHRCCRNYYR-RQVAPPPILIKVFLFQLIRSIGCLHLPS---VNVCHRDIKPHNVLVNEA 167 (360)
T ss_dssp SSCTTCEEEEEEEECCSC-BHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHTSTT---TCCBCSCCCGGGEEEETT
T ss_pred cccccceeEEEEeecccc-cHHHHHHHHhh-cccCCCHHHHHHHHHHHHHHHHHHhCCC---CCeecCcCCHHHEEEeCC
Confidence 3 7899999975 66655543222 2356899999999999999999999 7 89999999999999997
Q ss_pred CCcEEEecccccccCCCCCceeecccccccCcccccccCCC-CCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHH
Q 002346 723 DMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATG-RVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVT 801 (933)
Q Consensus 723 ~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~ 801 (933)
++.+||+|||+++....... .....||+.|+|||++.+. .++.++|||||||++|||++|+.||........ +..
T Consensus 168 ~~~~kl~Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~--~~~ 243 (360)
T 3e3p_A 168 DGTLKLCDFGSAKKLSPSEP--NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQ--LHE 243 (360)
T ss_dssp TTEEEECCCTTCBCCCTTSC--CCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHH
T ss_pred CCcEEEeeCCCceecCCCCC--cccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHH--HHH
Confidence 89999999999986654332 2345789999999998654 489999999999999999999999987543222 111
Q ss_pred HHHHHhh----------ccCCCCcccC-CCCC----CChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhc
Q 002346 802 WFRRVLI----------SKENIPKAID-PNLN----LDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQW 866 (933)
Q Consensus 802 ~~~~~~~----------~~~~~~~~~d-~~l~----~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~ 866 (933)
....... .........+ .... ...........+.+++.+||+.||++||++.|+++ ++|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~------hp~ 317 (360)
T 3e3p_A 244 IVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC------HPY 317 (360)
T ss_dssp HHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT------SGG
T ss_pred HHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc------Ccc
Confidence 1111000 0000000000 0000 00000112356889999999999999999999986 666
Q ss_pred CCC
Q 002346 867 KPA 869 (933)
Q Consensus 867 ~~~ 869 (933)
...
T Consensus 318 f~~ 320 (360)
T 3e3p_A 318 FDE 320 (360)
T ss_dssp GGG
T ss_pred ccc
Confidence 543
No 240
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=9.5e-37 Score=337.45 Aligned_cols=258 Identities=23% Similarity=0.361 Sum_probs=203.5
Q ss_pred hcCCccCCccccCCCeEEEEEEe--CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCc------ceeEEeEeeeC
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL--PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRH------LVALLGYCING 651 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~ 651 (933)
.++|++.+.||+|+||.||+|.. .+++.||||+++.. ....+.+.+|+.+++.++|++ ++++++++...
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~ 89 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV---DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHH 89 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS---HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEET
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC---CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccC
Confidence 46899999999999999999964 46889999998753 344577899999999997654 99999999999
Q ss_pred ceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecC---------
Q 002346 652 SERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGD--------- 722 (933)
Q Consensus 652 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~--------- 722 (933)
+..++||||+ +++|.+++... +..++++.+++.++.|+++||+|||+ ++|+||||||+||+++.
T Consensus 90 ~~~~lv~e~~-~~~l~~~l~~~---~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~~~ 162 (339)
T 1z57_A 90 GHICIVFELL-GLSTYDFIKEN---GFLPFRLDHIRKMAYQICKSVNFLHS---NKLTHTDLKPENILFVQSDYTEAYNP 162 (339)
T ss_dssp TEEEEEEECC-CCBHHHHHHHT---TTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCCCEEEEEC-
T ss_pred CcEEEEEcCC-CCCHHHHHHhc---CCCCCcHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEeccccccccCC
Confidence 9999999999 89999999652 23468999999999999999999999 89999999999999987
Q ss_pred ----------CCcEEEecccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCC
Q 002346 723 ----------DMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTM 792 (933)
Q Consensus 723 ----------~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~ 792 (933)
++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 163 ~~~~~~~~~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~ 238 (339)
T 1z57_A 163 KIKRDERTLINPDIKVVDFGSATYDDEH----HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHD 238 (339)
T ss_dssp ---CEEEEESCCCEEECCCSSCEETTSC----CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSC
T ss_pred ccccccccccCCCceEeeCcccccCccc----cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC
Confidence 668999999999865432 234579999999999999899999999999999999999999998654
Q ss_pred CchhhHHHHHHHHHhhccCCCCccc----------C-C--CCC------------------CChhhHHHHHHHHHHHHHc
Q 002346 793 PDDRAHLVTWFRRVLISKENIPKAI----------D-P--NLN------------------LDEETIESIYRVAELAGHC 841 (933)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~----------d-~--~l~------------------~~~~~~~~~~~~~~li~~c 841 (933)
..+.... +..... ..+..+ . . ... ...........+.+++.+|
T Consensus 239 ~~~~~~~---~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~ 312 (339)
T 1z57_A 239 SKEHLAM---MERILG---PLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKM 312 (339)
T ss_dssp HHHHHHH---HHHHHC---SCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHH
T ss_pred hHHHHHH---HHHHhC---CCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHH
Confidence 3322111 111110 000000 0 0 000 0001113345688999999
Q ss_pred ccCCCCCCCCHHHHHH
Q 002346 842 TAREPQQRPDMGHAVN 857 (933)
Q Consensus 842 l~~~P~~RPs~~evl~ 857 (933)
|+.||++||+++|+++
T Consensus 313 L~~dP~~Rpt~~ell~ 328 (339)
T 1z57_A 313 LEYDPAKRITLREALK 328 (339)
T ss_dssp TCSSTTTSCCHHHHTT
T ss_pred hCcCcccccCHHHHhc
Confidence 9999999999999976
No 241
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=2.7e-36 Score=339.24 Aligned_cols=203 Identities=23% Similarity=0.305 Sum_probs=173.2
Q ss_pred HhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC-CC-----cceeEEeEeeeC
Q 002346 579 VTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR-HR-----HLVALLGYCING 651 (933)
Q Consensus 579 ~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~l~~~~~~~ 651 (933)
+.++|++.+.||+|+||.||+|.. .+++.||||++... .....++.+|+.+++.++ |+ +|+++++++...
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~ 128 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK---KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFR 128 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS---HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEET
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc---HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccC
Confidence 357899999999999999999954 46889999999753 334567888999998885 55 499999999999
Q ss_pred ceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEec--CCCcEEEe
Q 002346 652 SERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIG--DDMRAKVA 729 (933)
Q Consensus 652 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~--~~~~~kl~ 729 (933)
...++||||++ ++|.+++.... ...+++..+..++.|++.||+|||+. ..+|+||||||+|||++ .++.+||+
T Consensus 129 ~~~~lv~e~~~-~~L~~~l~~~~---~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~ 203 (382)
T 2vx3_A 129 NHLCLVFEMLS-YNLYDLLRNTN---FRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIV 203 (382)
T ss_dssp TEEEEEEECCC-CBHHHHHHHTT---TSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEEC
T ss_pred CceEEEEecCC-CCHHHHHhhcC---cCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEE
Confidence 99999999995 59999997632 24589999999999999999999941 27999999999999994 57889999
Q ss_pred cccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCC
Q 002346 730 DFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMP 793 (933)
Q Consensus 730 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~ 793 (933)
|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus 204 DFG~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~ 263 (382)
T 2vx3_A 204 DFGSSCQLGQR----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANE 263 (382)
T ss_dssp CCTTCEETTCC----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred eccCceecccc----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence 99999876542 2345799999999999999999999999999999999999999986543
No 242
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=8.1e-37 Score=335.12 Aligned_cols=264 Identities=22% Similarity=0.346 Sum_probs=193.1
Q ss_pred hcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEee---------
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCI--------- 649 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--------- 649 (933)
.++|++.+.||+|+||.||+|... +++.||+|++... .....+++.+|++++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 87 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLT--DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDD 87 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECC--SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC-
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecC--ChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccc
Confidence 478999999999999999999664 5899999998755 3455678999999999999999999999873
Q ss_pred -----eCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEec-CC
Q 002346 650 -----NGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIG-DD 723 (933)
Q Consensus 650 -----~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~-~~ 723 (933)
+....++||||++ |+|.+++.. .++++..++.++.|+++||+|||+ ++|+||||||+||+++ ++
T Consensus 88 ~~~~~~~~~~~lv~e~~~-~~L~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~ 157 (320)
T 2i6l_A 88 VGSLTELNSVYIVQEYME-TDLANVLEQ------GPLLEEHARLFMYQLLRGLKYIHS---ANVLHRDLKPANLFINTED 157 (320)
T ss_dssp ---CCSCSEEEEEEECCS-EEHHHHHTT------CCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTT
T ss_pred cccccccCceeEEeeccC-CCHHHHhhc------CCccHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCC
Confidence 3467899999997 699999854 468999999999999999999999 8999999999999997 56
Q ss_pred CcEEEecccccccCCCCCc--eeecccccccCcccccccCC-CCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHH
Q 002346 724 MRAKVADFGLVKNAPDGKY--SVETRLAGTFGYLAPEYAAT-GRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLV 800 (933)
Q Consensus 724 ~~~kl~DfGla~~~~~~~~--~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~ 800 (933)
+.+||+|||+++....... .......|++.|+|||.+.+ ..++.++||||||+++|||++|+.||..........
T Consensus 158 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~-- 235 (320)
T 2i6l_A 158 LVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQ-- 235 (320)
T ss_dssp TEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH--
T ss_pred CeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHH--
Confidence 7999999999986543221 11233467999999998765 678999999999999999999999998654322111
Q ss_pred HHHHHHhh--------ccCCCCccc-----CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 801 TWFRRVLI--------SKENIPKAI-----DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 801 ~~~~~~~~--------~~~~~~~~~-----d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
........ ....++..+ .+.............++.+++.+|++.||++||+++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 236 LILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp HHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred HHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence 11100000 000000000 0000000000112346789999999999999999999986
No 243
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=1e-36 Score=343.41 Aligned_cols=268 Identities=21% Similarity=0.320 Sum_probs=197.5
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCc------e
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGS------E 653 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------~ 653 (933)
..+|++.+.||+|+||.||+|....+..||+|++..... ...+|+++++.++||||+++++++.... .
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~------~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~ 112 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR------FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVF 112 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT------SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc------hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceE
Confidence 357999999999999999999887777799998865421 2247999999999999999999986543 3
Q ss_pred eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEec-CCCcEEEeccc
Q 002346 654 RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIG-DDMRAKVADFG 732 (933)
Q Consensus 654 ~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~-~~~~~kl~DfG 732 (933)
.++||||+++ ++.+.+..... ....+++..++.++.|+++||+|||+ ++|+||||||+|||++ .++.+||+|||
T Consensus 113 ~~lv~e~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~kL~DFG 187 (394)
T 4e7w_A 113 LNLVLEYVPE-TVYRASRHYAK-LKQTMPMLLIKLYMYQLLRSLAYIHS---IGICHRDIKPQNLLLDPPSGVLKLIDFG 187 (394)
T ss_dssp EEEEEECCSE-EHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred EEEEeeccCc-cHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEcCCCCcEEEeeCC
Confidence 7899999976 44444432221 13569999999999999999999999 8999999999999999 79999999999
Q ss_pred ccccCCCCCceeecccccccCcccccccCCC-CCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHh----
Q 002346 733 LVKNAPDGKYSVETRLAGTFGYLAPEYAATG-RVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVL---- 807 (933)
Q Consensus 733 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~---- 807 (933)
+++....... .....||+.|+|||++.+. .++.++||||+||++|||++|+.||......+. +...+...-
T Consensus 188 ~a~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~--l~~i~~~~g~p~~ 263 (394)
T 4e7w_A 188 SAKILIAGEP--NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQ--LVEIIKVLGTPSR 263 (394)
T ss_dssp TCEECCTTCC--CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHHHCCCCH
T ss_pred CcccccCCCC--CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHHHhCCCCH
Confidence 9987654332 2345789999999998654 589999999999999999999999987543222 111111100
Q ss_pred -----hccCCCCcccCCCCCCChh----hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCCC
Q 002346 808 -----ISKENIPKAIDPNLNLDEE----TIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKPA 869 (933)
Q Consensus 808 -----~~~~~~~~~~d~~l~~~~~----~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~~ 869 (933)
.........+ +....... ......++.+++.+||+.||++||++.|+++ ++|...
T Consensus 264 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~------hp~f~~ 327 (394)
T 4e7w_A 264 EQIKTMNPNYMEHKF-PQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC------HPFFDE 327 (394)
T ss_dssp HHHHHHCGGGSSSCC-CCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT------SGGGST
T ss_pred HHHHhhChhhhhhcc-ccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc------Chhhhh
Confidence 0000000000 01000000 0012246789999999999999999999986 666543
No 244
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=7.7e-37 Score=343.12 Aligned_cols=270 Identities=19% Similarity=0.294 Sum_probs=202.1
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC-----------CCcceeEEeE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR-----------HRHLVALLGY 647 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~l~~~ 647 (933)
.++|++.+.||+|+||.||+|.. .+++.||||++... ....+.+.+|+.++++++ ||||++++++
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~ 94 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD---KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDH 94 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC---ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHH
Confidence 36899999999999999999964 57899999999754 334567889999999886 8999999999
Q ss_pred eeeCc----eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCC-CeEecCCCCCcEEec-
Q 002346 648 CINGS----ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQ-SFIHRDLKPSNILIG- 721 (933)
Q Consensus 648 ~~~~~----~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dik~~Nill~- 721 (933)
+...+ ..++||||+ +++|.+++.... ...+++..++.++.||+.||+|||+ + +|+||||||+|||++
T Consensus 95 ~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~---~~~~~~~~~~~i~~qi~~aL~~lH~---~~~ivH~Dikp~NIll~~ 167 (373)
T 1q8y_A 95 FNHKGPNGVHVVMVFEVL-GENLLALIKKYE---HRGIPLIYVKQISKQLLLGLDYMHR---RCGIIHTDIKPENVLMEI 167 (373)
T ss_dssp EEEEETTEEEEEEEECCC-CEEHHHHHHHTT---TSCCCHHHHHHHHHHHHHHHHHHHH---TTCEECSCCSGGGEEEEE
T ss_pred hhccCCCCceEEEEEecC-CCCHHHHHHHhh---ccCCcHHHHHHHHHHHHHHHHHHHh---cCCEEecCCChHHeEEec
Confidence 87654 789999999 899999997632 2458999999999999999999998 7 999999999999994
Q ss_pred -----CCCcEEEecccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchh
Q 002346 722 -----DDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDR 796 (933)
Q Consensus 722 -----~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~ 796 (933)
..+.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||........
T Consensus 168 ~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~ 243 (373)
T 1q8y_A 168 VDSPENLIQIKIADLGNACWYDEH----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSY 243 (373)
T ss_dssp EETTTTEEEEEECCCTTCEETTBC----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC--------
T ss_pred cCCCcCcceEEEcccccccccCCC----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCccccc
Confidence 4458999999999866432 2335789999999999988999999999999999999999999986532211
Q ss_pred hHHHHHHHHHhhccCCCCc--------------------ccCC-CCC--------CChhhHHHHHHHHHHHHHcccCCCC
Q 002346 797 AHLVTWFRRVLISKENIPK--------------------AIDP-NLN--------LDEETIESIYRVAELAGHCTAREPQ 847 (933)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~--------------------~~d~-~l~--------~~~~~~~~~~~~~~li~~cl~~~P~ 847 (933)
..............+..+. .+.. ... ...........+.+++.+||+.||+
T Consensus 244 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~ 323 (373)
T 1q8y_A 244 TKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPR 323 (373)
T ss_dssp -CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTT
T ss_pred CChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCcc
Confidence 1011111111110111111 0000 000 0011234556788999999999999
Q ss_pred CCCCHHHHHHHHhhhhhhcCCC
Q 002346 848 QRPDMGHAVNVLGPLVEQWKPA 869 (933)
Q Consensus 848 ~RPs~~evl~~L~~~~~~~~~~ 869 (933)
+||+++|+++ ++|...
T Consensus 324 ~Rpt~~ell~------hp~f~~ 339 (373)
T 1q8y_A 324 KRADAGGLVN------HPWLKD 339 (373)
T ss_dssp TCBCHHHHHT------CGGGTT
T ss_pred ccCCHHHHhh------Chhhhc
Confidence 9999999986 666653
No 245
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=2.4e-37 Score=339.05 Aligned_cols=247 Identities=23% Similarity=0.372 Sum_probs=200.8
Q ss_pred HHHHHhcCCccCCccccCCCeEEEEEE-eCCCcEEEEEEeccccCCc----hhHHHHHHHHHHHHhcC--CCcceeEEeE
Q 002346 575 VLRQVTDNFSEANILGRGGFGVVYGGE-LPDGTKIAVKRMESNTMGN----KGLSEFQAEIAVLTKVR--HRHLVALLGY 647 (933)
Q Consensus 575 ~l~~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~--h~niv~l~~~ 647 (933)
..+...++|++.+.||+|+||.||+|. ..+++.||||++....... ...+.+.+|+.++++++ |+||++++++
T Consensus 37 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~ 116 (320)
T 3a99_A 37 EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDW 116 (320)
T ss_dssp ---CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEE
T ss_pred ccCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEE
Confidence 344557889999999999999999995 4678999999997654322 12345778999999996 5999999999
Q ss_pred eeeCceeEEEEeecCC-CChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEec-CCCc
Q 002346 648 CINGSERLLVYEYMPR-GTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIG-DDMR 725 (933)
Q Consensus 648 ~~~~~~~~lv~e~~~~-gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~-~~~~ 725 (933)
+..++..++|||++.+ ++|.+++.. ...+++..++.++.|+++||+|||+ .+|+||||||+||+++ +++.
T Consensus 117 ~~~~~~~~lv~e~~~~~~~L~~~l~~-----~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~ 188 (320)
T 3a99_A 117 FERPDSFVLILERPEPVQDLFDFITE-----RGALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGE 188 (320)
T ss_dssp EECSSEEEEEEECCSSEEEHHHHHHH-----HCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTE
T ss_pred EecCCcEEEEEEcCCCCccHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHH---CCcEeCCCCHHHEEEeCCCCC
Confidence 9999999999999976 899999965 2468999999999999999999999 8999999999999999 7899
Q ss_pred EEEecccccccCCCCCceeecccccccCcccccccCCCCC-CCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHH
Q 002346 726 AKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRV-TTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFR 804 (933)
Q Consensus 726 ~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~ 804 (933)
+||+|||+++...... .....||+.|+|||++.+..+ +.++||||||+++|||++|+.||....
T Consensus 189 ~kL~Dfg~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~------------ 253 (320)
T 3a99_A 189 LKLIDFGSGALLKDTV---YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE------------ 253 (320)
T ss_dssp EEECCCTTCEECCSSC---BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------------
T ss_pred EEEeeCcccccccccc---ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh------------
Confidence 9999999998765432 234579999999999877665 688999999999999999999996421
Q ss_pred HHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 805 RVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 805 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
......... ...+. .++.+++.+||+.||++||+++|+++
T Consensus 254 ~~~~~~~~~----~~~~~---------~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 254 EIIRGQVFF----RQRVS---------SECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp HHHHCCCCC----SSCCC---------HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hhhcccccc----cccCC---------HHHHHHHHHHccCChhhCcCHHHHhc
Confidence 011111111 11111 35779999999999999999999986
No 246
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=6.6e-37 Score=336.91 Aligned_cols=258 Identities=23% Similarity=0.338 Sum_probs=180.1
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHH-HHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIA-VLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
.++|++.+.||+|+||.||+|.. .+|+.||||++.... ......++..|+. +++.++||||+++++++..++..++|
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv 99 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTV-DEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWIC 99 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCC-CHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeeccc-CchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEE
Confidence 36889999999999999999966 478999999997653 2333455666666 67778999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCC-CeEecCCCCCcEEecCCCcEEEeccccccc
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQ-SFIHRDLKPSNILIGDDMRAKVADFGLVKN 736 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dik~~Nill~~~~~~kl~DfGla~~ 736 (933)
|||+++ +|.+++..........+++..+..++.|+++||+|||+ . +|+||||||+||+++.++.+||+|||+++.
T Consensus 100 ~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~ 175 (327)
T 3aln_A 100 MELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKE---NLKIIHRDIKPSNILLDRSGNIKLCDFGISGQ 175 (327)
T ss_dssp ECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHH---HHSCCCSCCCGGGEEEETTTEEEECCCSSSCC
T ss_pred EeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhc---cCCEeECCCCHHHEEEcCCCCEEEccCCCcee
Confidence 999974 88888764333334678999999999999999999998 6 999999999999999999999999999986
Q ss_pred CCCCCceeecccccccCccccccc----CCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCC
Q 002346 737 APDGKYSVETRLAGTFGYLAPEYA----ATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKEN 812 (933)
Q Consensus 737 ~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (933)
..... ......||+.|+|||++ .+..++.++||||||+++|||++|+.||........ ...... ...
T Consensus 176 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-----~~~~~~--~~~ 246 (327)
T 3aln_A 176 LVDSI--AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFD-----QLTQVV--KGD 246 (327)
T ss_dssp --------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC------------CCCC--CSC
T ss_pred ccccc--ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHH-----HHHHHh--cCC
Confidence 54432 12334799999999998 456789999999999999999999999975422100 000000 010
Q ss_pred CCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 813 IPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 813 ~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
.+ .+.... .......+.+++.+||+.||++||++.++++
T Consensus 247 ~~-~~~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 247 PP-QLSNSE-----EREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp CC-CCCCCS-----SCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CC-CCCCcc-----cccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 01 111000 0011246789999999999999999999976
No 247
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=1.8e-36 Score=334.25 Aligned_cols=253 Identities=24% Similarity=0.312 Sum_probs=171.9
Q ss_pred HhcCCccCC-ccccCCCeEEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeee----Cc
Q 002346 579 VTDNFSEAN-ILGRGGFGVVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCIN----GS 652 (933)
Q Consensus 579 ~~~~~~~~~-~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~ 652 (933)
+.++|.+.+ .||+|+||.||+|... +|+.||||++... . .........++.++||||+++++++.. +.
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~---~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 99 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS---P---KARQEVDHHWQASGGPHIVCILDVYENMHHGKR 99 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS---H---HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc---H---HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCc
Confidence 457888855 6999999999999654 7999999998653 1 122222334566799999999999876 45
Q ss_pred eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecC---CCcEEEe
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGD---DMRAKVA 729 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~---~~~~kl~ 729 (933)
..++||||+++|+|.+++... ....+++.+++.++.|+++||+|||+ ++|+||||||+||+++. ++.+||+
T Consensus 100 ~~~lv~e~~~gg~L~~~l~~~---~~~~l~~~~~~~i~~ql~~~l~~LH~---~~ivH~dlkp~NIll~~~~~~~~~kl~ 173 (336)
T 3fhr_A 100 CLLIIMECMEGGELFSRIQER---GDQAFTEREAAEIMRDIGTAIQFLHS---HNIAHRDVKPENLLYTSKEKDAVLKLT 173 (336)
T ss_dssp EEEEEEECCTTEEHHHHHHTC----CCCCBHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSTTCCEEEC
T ss_pred eEEEEEeccCCCCHHHHHHhc---CCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEEecCCCceEEEe
Confidence 578999999999999999652 22469999999999999999999999 89999999999999986 4559999
Q ss_pred cccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhc
Q 002346 730 DFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLIS 809 (933)
Q Consensus 730 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~ 809 (933)
|||+++...... .....||+.|+|||++.+..++.++||||||+++|||++|+.||........... ........
T Consensus 174 Dfg~~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~--~~~~~~~~ 248 (336)
T 3fhr_A 174 DFGFAKETTQNA---LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPG--MKRRIRLG 248 (336)
T ss_dssp CCTTCEEC-------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------
T ss_pred ccccceeccccc---cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhh--HHHhhhcc
Confidence 999998654322 2345789999999999888899999999999999999999999976533221100 00011111
Q ss_pred cCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 810 KENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 810 ~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
....+..... .....+.+++.+|++.||++||+++|+++
T Consensus 249 ~~~~~~~~~~---------~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 249 QYGFPNPEWS---------EVSEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp --CCCTTTST---------TCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ccccCchhhc---------cCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 1111110001 11245779999999999999999999987
No 248
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.6e-36 Score=354.36 Aligned_cols=370 Identities=19% Similarity=0.252 Sum_probs=275.2
Q ss_pred CccccceEeCCC------------CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceecc
Q 002346 54 YCEWTGINCDNS------------NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYL 120 (933)
Q Consensus 54 ~C~w~gv~c~~~------------~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~L 120 (933)
.|.|.|+ |+.. ..++.|+|++|++++..|..|..+++|++|+|++|+|++.+| .|.++++|++|+|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4899998 8632 379999999999999889999999999999999999999987 7999999999999
Q ss_pred ccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCC-ChhhcCCCCCCEEEccCCcC
Q 002346 121 DNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLI-PDFFDSFSNLQNLRLSYNNF 199 (933)
Q Consensus 121 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l 199 (933)
++|+++++++..|+++++|++|+|++|++... ..|..+.++++|++|++++|++.+.+ +..|..+++|++|+|++|++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL-GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCccccc-chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 99999999999999999999999999999862 25678999999999999999854444 46899999999999999999
Q ss_pred CCCCCccccc-------------------------cccchhhcccccCCcccc--ccc----------------------
Q 002346 200 TGSLPASFAK-------------------------SDIQNLWMNDQQLGLSGT--LDV---------------------- 230 (933)
Q Consensus 200 ~~~~p~~~~~-------------------------~~l~~l~l~~n~~~~~~~--~~~---------------------- 230 (933)
++.+|..+.. .+|++|++++|.+..... ...
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence 9888877653 245555555555443110 000
Q ss_pred ------cc-----------------------------------------------------------CCccCcEEEecCC
Q 002346 231 ------LS-----------------------------------------------------------GMTQLRQVWLHKN 245 (933)
Q Consensus 231 ------l~-----------------------------------------------------------~l~~L~~L~L~~N 245 (933)
+. .+++|+.|++++|
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence 00 0123444455555
Q ss_pred ccCCCCCCC-CCCCCCCEEEccCCcccccCcc---cccCCCCCCEEEccCccCccCC-----CCCCCCccEEeccCCcCC
Q 002346 246 QFTGPIPDL-SKCESLFDLSLRDNQLTGVVPA---SVISLPALLNISLQNNKLQGPY-----PLFPSKVQKVSLDHNNFC 316 (933)
Q Consensus 246 ~l~~~~~~~-~~~~~L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~l~~n~~~ 316 (933)
+++..+..+ ..+++|+.|+|++|++++.+|. .+..+++|+.|+|++|++++.. .....+|+.|+|++|+|.
T Consensus 321 ~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 544333233 4688999999999999987653 4778899999999999997643 234568999999999887
Q ss_pred CCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeE
Q 002346 317 KNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNL 396 (933)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L 396 (933)
..+... .....++.+...++.+..+|..+. ++|+.|+|++|++++.+ +++++|+.|
T Consensus 401 ~lp~~~------------------~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L 456 (549)
T 2z81_A 401 PMPDSC------------------QWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQEL 456 (549)
T ss_dssp CCCSCC------------------CCCTTCCEEECTTSCCSCCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEE
T ss_pred cCChhh------------------cccccccEEECCCCCcccccchhc--CCceEEECCCCChhhhc----ccCChhcEE
Confidence 543321 122233333334444555665442 57888899988888743 578888889
Q ss_pred ecccCcccCCCCcccCCCCCcCEEeccCCcCcccCCC-CC--CCcccccCCCCCCcCC
Q 002346 397 YLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKVPD-FG--SNVKFTVSPGNPFIGT 451 (933)
Q Consensus 397 ~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p~-~~--~~~~~~~~~~n~~~~~ 451 (933)
+|++|+|+ .+|. ...+++|++|+|++|+|++.+|. +. ..++...+.+|||.|.
T Consensus 457 ~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 457 YISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp ECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred ECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 99999888 6776 46788888999999988888876 33 2334445678888663
No 249
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.7e-37 Score=334.05 Aligned_cols=252 Identities=25% Similarity=0.408 Sum_probs=194.5
Q ss_pred HHHHhcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCc----hhHHHHHHHHHHHHhc----CCCcceeEEe
Q 002346 576 LRQVTDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGN----KGLSEFQAEIAVLTKV----RHRHLVALLG 646 (933)
Q Consensus 576 l~~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l----~h~niv~l~~ 646 (933)
.+...++|++.+.||+|+||.||+|.. .+++.||||++....... .....+.+|+.++.++ +||||+++++
T Consensus 26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~ 105 (312)
T 2iwi_A 26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLD 105 (312)
T ss_dssp -------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEE
T ss_pred hhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEE
Confidence 345568899999999999999999965 578999999997653221 1233466799999998 8999999999
Q ss_pred EeeeCceeEEEEee-cCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEec-CCC
Q 002346 647 YCINGSERLLVYEY-MPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIG-DDM 724 (933)
Q Consensus 647 ~~~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~-~~~ 724 (933)
++...+..++|||| +.+++|.+++... ..+++.+++.++.|+++||+|||+ ++|+||||||+||+++ .++
T Consensus 106 ~~~~~~~~~~v~e~~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~ 177 (312)
T 2iwi_A 106 WFETQEGFMLVLERPLPAQDLFDYITEK-----GPLGEGPSRCFFGQVVAAIQHCHS---RGVVHRDIKDENILIDLRRG 177 (312)
T ss_dssp EC-----CEEEEECCSSEEEHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHHH---HTEECCCCSGGGEEEETTTT
T ss_pred EEecCCeEEEEEEecCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChhhEEEeCCCC
Confidence 99999999999999 7899999999762 458999999999999999999999 8999999999999999 889
Q ss_pred cEEEecccccccCCCCCceeecccccccCcccccccCCCCC-CCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHH
Q 002346 725 RAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRV-TTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWF 803 (933)
Q Consensus 725 ~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~ 803 (933)
.+||+|||+++...... .....|++.|+|||++.+..+ +.++||||||+++|||++|+.||....
T Consensus 178 ~~kl~dfg~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----------- 243 (312)
T 2iwi_A 178 CAKLIDFGSGALLHDEP---YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ----------- 243 (312)
T ss_dssp EEEECCCSSCEECCSSC---BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-----------
T ss_pred eEEEEEcchhhhcccCc---ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH-----------
Confidence 99999999998765432 234579999999999876666 458999999999999999999996421
Q ss_pred HHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhhhcCCC
Q 002346 804 RRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVEQWKPA 869 (933)
Q Consensus 804 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~~~~~~ 869 (933)
........++ ... ...+.+++.+|++.+|++||+++|+++ ++|...
T Consensus 244 -~~~~~~~~~~----~~~---------~~~~~~li~~~l~~~p~~Rps~~e~l~------~~~~~~ 289 (312)
T 2iwi_A 244 -EILEAELHFP----AHV---------SPDCCALIRRCLAPKPSSRPSLEEILL------DPWMQT 289 (312)
T ss_dssp -HHHHTCCCCC----TTS---------CHHHHHHHHHHTCSSTTTSCCHHHHHH------STTTCC
T ss_pred -HHhhhccCCc----ccC---------CHHHHHHHHHHccCChhhCcCHHHHhc------ChhhcC
Confidence 0111111111 111 135779999999999999999999987 566543
No 250
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=1.4e-35 Score=330.27 Aligned_cols=263 Identities=21% Similarity=0.307 Sum_probs=203.7
Q ss_pred hcCCccCCccccCCCeEEEEEEeC-CC-cEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCc------ceeEEeEeeeC
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP-DG-TKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRH------LVALLGYCING 651 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~-~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~ 651 (933)
.++|++.+.||+|+||.||+|... ++ +.||+|+++.. ....+.+.+|+.++++++|++ ++.+++++...
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 94 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV---GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFH 94 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEET
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc---ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeC
Confidence 478999999999999999999653 44 78999999753 344567889999999997766 89999999999
Q ss_pred ceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEe-----------
Q 002346 652 SERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILI----------- 720 (933)
Q Consensus 652 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill----------- 720 (933)
+..++||||+ ++++.+++... ....+++.+++.++.|+++||+|||+ ++|+||||||+|||+
T Consensus 95 ~~~~lv~e~~-~~~l~~~l~~~---~~~~~~~~~~~~i~~qi~~~L~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~~~ 167 (355)
T 2eu9_A 95 GHMCIAFELL-GKNTFEFLKEN---NFQPYPLPHVRHMAYQLCHALRFLHE---NQLTHTDLKPENILFVNSEFETLYNE 167 (355)
T ss_dssp TEEEEEEECC-CCBHHHHHHHT---TTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEESCCCEEEEECC
T ss_pred CeEEEEEecc-CCChHHHHHhc---cCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEecccccccccc
Confidence 9999999999 67888887552 22468999999999999999999998 899999999999999
Q ss_pred --------cCCCcEEEecccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCC
Q 002346 721 --------GDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTM 792 (933)
Q Consensus 721 --------~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~ 792 (933)
+.++.+||+|||+++...... ....||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 168 ~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~ 243 (355)
T 2eu9_A 168 HKSCEEKSVKNTSIRVADFGSATFDHEHH----TTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHE 243 (355)
T ss_dssp C-CCCEEEESCCCEEECCCTTCEETTSCC----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred cccccccccCCCcEEEeecCccccccccc----cCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Confidence 567899999999998654322 34579999999999999999999999999999999999999998654
Q ss_pred CchhhHHHHHHHHHhhccCCCCccc-----------CCC--CCC------------------ChhhHHHHHHHHHHHHHc
Q 002346 793 PDDRAHLVTWFRRVLISKENIPKAI-----------DPN--LNL------------------DEETIESIYRVAELAGHC 841 (933)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------d~~--l~~------------------~~~~~~~~~~~~~li~~c 841 (933)
..+.. ..+.... ...+..+ ... ... ..........+.+++.+|
T Consensus 244 ~~~~~---~~~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~ 317 (355)
T 2eu9_A 244 NREHL---VMMEKIL---GPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRM 317 (355)
T ss_dssp HHHHH---HHHHHHH---CCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHc---CCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHH
Confidence 32221 1111111 0011000 000 000 000112234688999999
Q ss_pred ccCCCCCCCCHHHHHHHHhhhhhhcCC
Q 002346 842 TAREPQQRPDMGHAVNVLGPLVEQWKP 868 (933)
Q Consensus 842 l~~~P~~RPs~~evl~~L~~~~~~~~~ 868 (933)
|+.||++||+++|+++ ++|..
T Consensus 318 L~~dP~~Rpt~~e~l~------hp~f~ 338 (355)
T 2eu9_A 318 LEFDPAQRITLAEALL------HPFFA 338 (355)
T ss_dssp TCSSTTTSCCHHHHTT------SGGGG
T ss_pred hcCChhhCcCHHHHhc------Chhhc
Confidence 9999999999999975 66654
No 251
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=5e-36 Score=342.21 Aligned_cols=254 Identities=24% Similarity=0.324 Sum_probs=188.3
Q ss_pred cCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCceeEEEEe
Q 002346 581 DNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGSERLLVYE 659 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 659 (933)
+.|.+.+.||+|+||+||.+...+|+.||||++... ..+.+.+|+.++.++ +|||||++++++.++...++|||
T Consensus 15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~-----~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E 89 (434)
T 2rio_A 15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID-----FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALE 89 (434)
T ss_dssp SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG-----GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH-----HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEe
Confidence 445667889999999998776668999999998653 235678999999987 89999999999999999999999
Q ss_pred ecCCCChhhHhhhcccCCC--CCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCC-------------C
Q 002346 660 YMPRGTLAQHLFEWHDHGY--TPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDD-------------M 724 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~--~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~-------------~ 724 (933)
|+. |+|.+++........ ...++..++.++.||+.||+|||+ ++|+||||||+|||++.+ +
T Consensus 90 ~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~ 165 (434)
T 2rio_A 90 LCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHS---LKIIHRDLKPQNILVSTSSRFTADQQTGAENL 165 (434)
T ss_dssp CCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEECCHHHHSCCTTCCCSC
T ss_pred cCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEecCcccccccccCCCce
Confidence 995 699999976322110 112344567899999999999999 899999999999999754 4
Q ss_pred cEEEecccccccCCCCCce---eecccccccCcccccccCC-------CCCCCccchHhHHHHHHHHHc-CCCCCCCCCC
Q 002346 725 RAKVADFGLVKNAPDGKYS---VETRLAGTFGYLAPEYAAT-------GRVTTKIDVYAFGVVLMETIT-GRKALDDTMP 793 (933)
Q Consensus 725 ~~kl~DfGla~~~~~~~~~---~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~ 793 (933)
.+||+|||+++........ ......||+.|+|||++.+ ..++.++|||||||++|||++ |+.||.....
T Consensus 166 ~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~ 245 (434)
T 2rio_A 166 RILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS 245 (434)
T ss_dssp EEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT
T ss_pred EEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchh
Confidence 8999999999876554322 1234579999999999865 578999999999999999999 9999976433
Q ss_pred chhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 794 DDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
... . ........+.. + .........++.+++.+|++.||++||++.++++
T Consensus 246 ~~~----~----i~~~~~~~~~~--~----~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 246 RES----N----IIRGIFSLDEM--K----CLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp HHH----H----HHHTCCCCCCC--T----TCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hHH----H----HhcCCCCcccc--c----ccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 221 1 11111111111 0 1112334467889999999999999999999986
No 252
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.3e-35 Score=352.00 Aligned_cols=357 Identities=16% Similarity=0.155 Sum_probs=214.8
Q ss_pred ccceEeCC----------CCCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccc
Q 002346 57 WTGINCDN----------SNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNF 125 (933)
Q Consensus 57 w~gv~c~~----------~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l 125 (933)
+.-+.|.+ ...++.|+|++|.|++..|.+|+.+++|++|+|++|.++++.| .|.++++|++|+|++|++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 45688864 2478999999999998888899999999999999999998887 789999999999999999
Q ss_pred cCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCc
Q 002346 126 TSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPA 205 (933)
Q Consensus 126 ~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 205 (933)
+++++..|+++++|++|+|++|++.. ..|..+.++++|++|+|++|++.+..+..+..+++|++|+|++|++++..|.
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISS--IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSC--GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred cccChhhhcccccccEeeccccCccc--CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 99888889999999999999998887 2356677888888888888888775444444477777777777777755555
Q ss_pred cccc-cccc--hhhcccccCCccccc------------------------------------------------ccccCC
Q 002346 206 SFAK-SDIQ--NLWMNDQQLGLSGTL------------------------------------------------DVLSGM 234 (933)
Q Consensus 206 ~~~~-~~l~--~l~l~~n~~~~~~~~------------------------------------------------~~l~~l 234 (933)
.+.. ..++ .|++++|.+...... ..+.++
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence 5544 2344 455555544321110 001111
Q ss_pred c--cCcEEEecCCccCCCCCC-CCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCC---CCCccEE
Q 002346 235 T--QLRQVWLHKNQFTGPIPD-LSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLF---PSKVQKV 308 (933)
Q Consensus 235 ~--~L~~L~L~~N~l~~~~~~-~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L 308 (933)
. +|+.|++++|.+++..+. +..+++|+.|+|++|+++ .+|..+..+++|++|++++|++++..|.. ..+|+.|
T Consensus 252 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 1 455555555555555543 555555666666655555 45555555555566666655555544422 2355555
Q ss_pred eccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccC-CCCCCCCCCCC--CccccCCCceeEEEccCccccCcCch
Q 002346 309 SLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSD-SWEGNNACDGW--PFVTCSQGRIITINLANKLLAGNISP 385 (933)
Q Consensus 309 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~--p~~~~~l~~L~~L~Ls~N~l~g~~p~ 385 (933)
++++|.+.+..+... +.....++. ++.+|...+.. |..+..+++|+.|+|++|++.+..|.
T Consensus 331 ~l~~n~~~~~~~~~~----------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 394 (606)
T 3t6q_A 331 SIKGNTKRLELGTGC----------------LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394 (606)
T ss_dssp ECCSCSSCCBCCSST----------------TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT
T ss_pred ECCCCCcccccchhh----------------hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH
Confidence 555555543221110 000111111 11222221111 33444455555555555555554455
Q ss_pred hhcCcccCCeEecccCcccCCCCcc-cCCCCCcCEEeccCCcCcccCC
Q 002346 386 AYANLTSLKNLYLQQNNLTGPIPDG-LTKLASLQNLDVSNNNLSGKVP 432 (933)
Q Consensus 386 ~~~~l~~L~~L~L~~N~l~g~~p~~-~~~l~~L~~l~ls~N~l~g~~p 432 (933)
.|+.+++|+.|+|++|++++..|.. +..+++|+.|++++|.+++.+|
T Consensus 395 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH
Confidence 5555555555555555555444332 4455555555555555554444
No 253
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=325.14 Aligned_cols=253 Identities=22% Similarity=0.361 Sum_probs=181.4
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 658 (933)
.++|++.+.||+|+||.||+|.. .+|+.||||++..........+.+..+..+++.++||||+++++++..++..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 36789999999999999999966 47899999999876433333444555666788889999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCC-CeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQ-SFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
||+ ++.+..+... . ...+++..++.++.|+++||+|||+ . +|+||||||+||+++.++.+||+|||++...
T Consensus 104 e~~-~~~~~~l~~~-~---~~~~~~~~~~~~~~~i~~~l~~lH~---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~ 175 (318)
T 2dyl_A 104 ELM-GTCAEKLKKR-M---QGPIPERILGKMTVAIVKALYYLKE---KHGVIHRDVKPSNILLDERGQIKLCDFGISGRL 175 (318)
T ss_dssp CCC-SEEHHHHHHH-H---TSCCCHHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCGGGEEECTTSCEEECCCTTC---
T ss_pred ecc-CCcHHHHHHH-h---ccCCCHHHHHHHHHHHHHHHHHHHh---hCCEEeCCCCHHHEEECCCCCEEEEECCCchhc
Confidence 999 4555544432 1 2568999999999999999999998 5 9999999999999999999999999998765
Q ss_pred CCCCceeecccccccCcccccccC-----CCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCC
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAA-----TGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKEN 812 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (933)
.... ......|++.|+|||++. ...++.++||||||+++|||++|+.||........ . .........
T Consensus 176 ~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~---~~~~~~~~~- 247 (318)
T 2dyl_A 176 VDDK--AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFE--V---LTKVLQEEP- 247 (318)
T ss_dssp -------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHH--H---HHHHHHSCC-
T ss_pred cCCc--cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHH--H---HHHHhccCC-
Confidence 4432 223457999999999984 45688999999999999999999999976432211 1 111121111
Q ss_pred CCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 813 IPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 813 ~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
..+..... ....+.+++.+||+.||.+||+++++++
T Consensus 248 --~~~~~~~~-------~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 248 --PLLPGHMG-------FSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp --CCCCSSSC-------CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred --CCCCccCC-------CCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 11110000 1135779999999999999999999986
No 254
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-35 Score=340.57 Aligned_cols=317 Identities=19% Similarity=0.219 Sum_probs=250.2
Q ss_pred CCCCCc--cccceEeCCC----------CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCc
Q 002346 50 SSTGYC--EWTGINCDNS----------NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQ 116 (933)
Q Consensus 50 ~~~~~C--~w~gv~c~~~----------~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~ 116 (933)
+..|.| .|..|.|... ..++.|+|++|+|++..+..|..+++|++|+|++|.|+++.| .|.++++|+
T Consensus 4 p~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 83 (477)
T 2id5_A 4 PPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83 (477)
T ss_dssp STTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCC
Confidence 344556 3678888642 367888888888887777788888888888888888888776 788888888
Q ss_pred eeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccC
Q 002346 117 DIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSY 196 (933)
Q Consensus 117 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 196 (933)
+|+|++|+++.++...|.++++|++|+|++|++.. ..|..+..+++|++|+|++|.+.+..+..|..+++|++|+|++
T Consensus 84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI--LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES
T ss_pred EEECCCCcCCccCcccccCCCCCCEEECCCCcccc--CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC
Confidence 88888888888888888888888888888888877 4567788888888888888888888888888888888888888
Q ss_pred CcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCC-CCCCCCCCCEEEccCCcccccCc
Q 002346 197 NNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIP-DLSKCESLFDLSLRDNQLTGVVP 275 (933)
Q Consensus 197 N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~L~~L~L~~N~l~~~~p 275 (933)
|++++..+..+ ..+++|+.|+|++|.+++..+ .+..+++|+.|+|++|.+.+.+|
T Consensus 162 n~l~~~~~~~l------------------------~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 162 CNLTSIPTEAL------------------------SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp CCCSSCCHHHH------------------------TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred CcCcccChhHh------------------------cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence 88874333333 347888888888888887666 47788888888888888777777
Q ss_pred ccccCCCCCCEEEccCccCccCCC---CCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCC
Q 002346 276 ASVISLPALLNISLQNNKLQGPYP---LFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEG 352 (933)
Q Consensus 276 ~~l~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 352 (933)
..+....+|+.|+|++|++++..+ ....+|+.|+|++|.+.+..
T Consensus 218 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------------------------------- 264 (477)
T 2id5_A 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE--------------------------------- 264 (477)
T ss_dssp TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC---------------------------------
T ss_pred cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC---------------------------------
Confidence 777777788888888888885443 23457888888888775532
Q ss_pred CCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccCC
Q 002346 353 NNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKVP 432 (933)
Q Consensus 353 ~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p 432 (933)
+..+..+++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|++.+..+
T Consensus 265 -------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 265 -------GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp -------TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred -------hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 2345567889999999999998888899999999999999999997777788889999999999999887644
No 255
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7e-35 Score=349.20 Aligned_cols=380 Identities=18% Similarity=0.195 Sum_probs=242.5
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSL 144 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 144 (933)
.+++.|+|++|.+++..|..|+.+++|++|+|++|.|++..+ .+.++++|++|+|++|.+++++...+..+++|++|+|
T Consensus 81 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 160 (606)
T 3t6q_A 81 HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEEC
T ss_pred cccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEc
Confidence 478888999988888888888888888888888888888755 7888888888888888888876555666888888888
Q ss_pred cCCCCCCCCCCCccccCCccCC----------------------------------------------------------
Q 002346 145 SDNPNLAPWPFPNELTKSTSLT---------------------------------------------------------- 166 (933)
Q Consensus 145 s~N~~~~~~~~p~~~~~l~~L~---------------------------------------------------------- 166 (933)
++|++.. ..|..+..+++|+
T Consensus 161 ~~n~l~~--~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 161 QNNAIHY--LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp CSSCCCE--ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred ccCcccc--cChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence 8887765 2334444444444
Q ss_pred -------------------eeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccc-cccchhhcccccCCccc
Q 002346 167 -------------------TLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAK-SDIQNLWMNDQQLGLSG 226 (933)
Q Consensus 167 -------------------~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~l~~l~l~~n~~~~~~ 226 (933)
.|++++|++.+..+..|+.+++|++|+|++|+++ .+|..+.. ..|++|++.+|.+....
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~ 317 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGG
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCc
Confidence 3444444444444555677788888888888887 77777655 56777888877765332
Q ss_pred ccccccCCccCcEEEecCCccCCCCCC--CCCCCCCCEEEccCCcccccC--cccccCCCCCCEEEccCccCccCCCCC-
Q 002346 227 TLDVLSGMTQLRQVWLHKNQFTGPIPD--LSKCESLFDLSLRDNQLTGVV--PASVISLPALLNISLQNNKLQGPYPLF- 301 (933)
Q Consensus 227 ~~~~l~~l~~L~~L~L~~N~l~~~~~~--~~~~~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~- 301 (933)
...+..+++|+.|++++|.+.+.++. +..+++|+.|++++|++++.. |..+..+++|++|++++|++++..|..
T Consensus 318 -~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 396 (606)
T 3t6q_A 318 -QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396 (606)
T ss_dssp -GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT
T ss_pred -hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh
Confidence 23455566666666666666654442 566666666666666666544 555666666666666666666555433
Q ss_pred --CCCccEEeccCCcCCCCCCCC-CCCCCchhhhh-------Hh-hhcccCCCccc-cCCCCCCCCCC---CCCccccCC
Q 002346 302 --PSKVQKVSLDHNNFCKNSSDA-GKPCDPQVTTL-------LQ-IAGDMGYPAIL-SDSWEGNNACD---GWPFVTCSQ 366 (933)
Q Consensus 302 --~~~l~~L~l~~n~~~~~~~~~-~~~~~~~~~~~-------~~-~~~~~~~~~~l-~~~~~~~~~~~---~~p~~~~~l 366 (933)
..+|+.|++++|.+.+..+.. +..+ .....+ .. .+..+.....+ ...+.+|...+ ..+..+..+
T Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 475 (606)
T 3t6q_A 397 KECPQLELLDLAFTRLKVKDAQSPFQNL-HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475 (606)
T ss_dssp TTCTTCSEEECTTCCEECCTTCCTTTTC-TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred cCCccCCeEECCCCcCCCcccchhhhCc-ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC
Confidence 235566666666665443221 1100 000000 00 00011111122 22334444433 223456777
Q ss_pred CceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccCCCCC---CCcccccC
Q 002346 367 GRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKVPDFG---SNVKFTVS 443 (933)
Q Consensus 367 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p~~~---~~~~~~~~ 443 (933)
++|+.|+|++|++++..|..|+++++|+.|+|++|++++..|..+.+++.| +|++++|++++.+|... ..++...+
T Consensus 476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC
T ss_pred CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeC
Confidence 788888888888887777778888888888888888887777788888888 88888888887776532 23344456
Q ss_pred CCCCCcCC
Q 002346 444 PGNPFIGT 451 (933)
Q Consensus 444 ~~n~~~~~ 451 (933)
.+|||.|.
T Consensus 555 ~~N~~~c~ 562 (606)
T 3t6q_A 555 RQNPLDCT 562 (606)
T ss_dssp TTCCEECS
T ss_pred CCCCcccc
Confidence 78888663
No 256
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=338.28 Aligned_cols=249 Identities=25% Similarity=0.404 Sum_probs=186.8
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCceeEEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGSERLLVY 658 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 658 (933)
..+|.+.+.||+|+||+||.....+++.||||++..... ..+.+|+++++++ +|||||++++++.+....++||
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~-----~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~ 97 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF-----SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAI 97 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE-----EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH-----HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEE
Confidence 356888999999999997665556899999999875432 2356899999999 7999999999999999999999
Q ss_pred eecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecC-----CCcEEEecccc
Q 002346 659 EYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGD-----DMRAKVADFGL 733 (933)
Q Consensus 659 e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~-----~~~~kl~DfGl 733 (933)
||+. |+|.+++.... ....+.+++.++.||++||+|||+ ++|+||||||+||+++. ...+||+|||+
T Consensus 98 E~~~-g~L~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~ 169 (432)
T 3p23_A 98 ELCA-ATLQEYVEQKD----FAHLGLEPITLLQQTTSGLAHLHS---LNIVHRDLKPHNILISMPNAHGKIKAMISDFGL 169 (432)
T ss_dssp ECCS-EEHHHHHHSSS----CCCCSSCHHHHHHHHHHHHHHHHH---TTCCCCCCSTTSEEECCCBTTTBCCEEECCTTE
T ss_pred ECCC-CCHHHHHHhcC----CCccchhHHHHHHHHHHHHHHHHH---CcCEeCCCCHHHEEEecCCCCCceeEEEecccc
Confidence 9995 69999996522 234445677899999999999999 89999999999999953 33688999999
Q ss_pred cccCCCCCc--eeecccccccCcccccccC---CCCCCCccchHhHHHHHHHHHc-CCCCCCCCCCchhhHHHHHHHHHh
Q 002346 734 VKNAPDGKY--SVETRLAGTFGYLAPEYAA---TGRVTTKIDVYAFGVVLMETIT-GRKALDDTMPDDRAHLVTWFRRVL 807 (933)
Q Consensus 734 a~~~~~~~~--~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~SlG~~l~ellt-G~~p~~~~~~~~~~~~~~~~~~~~ 807 (933)
++....... .......||+.|+|||++. ...++.++|||||||++|||++ |+.||........ ...
T Consensus 170 a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~--------~~~ 241 (432)
T 3p23_A 170 CKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQA--------NIL 241 (432)
T ss_dssp EECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHH--------HHH
T ss_pred eeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHH--------HHH
Confidence 986654321 2234467999999999997 4567889999999999999999 8899865432211 011
Q ss_pred hccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 808 ISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 808 ~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
...... ....+ .......+.+++.+||+.||++||++.|+++
T Consensus 242 ~~~~~~-~~~~~-------~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 242 LGACSL-DCLHP-------EKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp TTCCCC-TTSCT-------TCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred hccCCc-cccCc-------cccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 111111 11111 1122344679999999999999999999985
No 257
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.9e-34 Score=341.57 Aligned_cols=359 Identities=20% Similarity=0.193 Sum_probs=247.6
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSL 144 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 144 (933)
.+++.|+|++|++++..+..|..+++|++|+|++|+|+++.| .|.++++|++|+|++|+|+.+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEEC
Confidence 578999999999998888899999999999999999999887 789999999999999999988876 7999999999
Q ss_pred cCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCC--CEEEccCCcC--CCCCCcccccc----------
Q 002346 145 SDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNL--QNLRLSYNNF--TGSLPASFAKS---------- 210 (933)
Q Consensus 145 s~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L--~~L~L~~N~l--~~~~p~~~~~~---------- 210 (933)
++|++... ++|..++++++|++|+|++|++.+. .+..+++| ++|+|++|++ ++..|..+...
T Consensus 129 s~N~l~~l-~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 129 SFNDFDVL-PVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204 (562)
T ss_dssp CSSCCSBC-CCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred CCCCcccc-CchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence 99998862 3468899999999999999999874 34445555 9999999999 77778777652
Q ss_pred -----------------ccchhhcccccCC---ccccccccc---------------------------CCccCcEEEec
Q 002346 211 -----------------DIQNLWMNDQQLG---LSGTLDVLS---------------------------GMTQLRQVWLH 243 (933)
Q Consensus 211 -----------------~l~~l~l~~n~~~---~~~~~~~l~---------------------------~l~~L~~L~L~ 243 (933)
.|+.+++..|... ..+..+.+. ..++|++|+++
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 2333333333100 000000000 12367777777
Q ss_pred CCccCCCCCC-C-----CCCC--------------------------CCCEEEccCCcccccCcccccCCCCCCEEEccC
Q 002346 244 KNQFTGPIPD-L-----SKCE--------------------------SLFDLSLRDNQLTGVVPASVISLPALLNISLQN 291 (933)
Q Consensus 244 ~N~l~~~~~~-~-----~~~~--------------------------~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 291 (933)
+|+++|.+|. + ..++ +|+.|++++|++.... ....+++|++|++++
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCS
T ss_pred ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCC
Confidence 7777765553 2 2222 2344444444433111 014566677777777
Q ss_pred ccCccCCCCC---CCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccc-cCCCCCCCCCCCCCcc-ccCC
Q 002346 292 NKLQGPYPLF---PSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAIL-SDSWEGNNACDGWPFV-TCSQ 366 (933)
Q Consensus 292 N~l~~~~p~~---~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~p~~-~~~l 366 (933)
|++++.+|.. ..+|+.|+|++|++.+... ++..+.....+ ..++.+|...+.+|.. +..+
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK---------------VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH---------------HHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCccc---------------chhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence 7777655543 2456677777776654321 11111111222 2233444444435554 6678
Q ss_pred CceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccCCC-CCC--CcccccC
Q 002346 367 GRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKVPD-FGS--NVKFTVS 443 (933)
Q Consensus 367 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p~-~~~--~~~~~~~ 443 (933)
++|+.|+|++|++++.+|..+. ++|+.|+|++|+|+ .+|..+..+++|++|+|++|+|++.++. +.. .++...+
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEEC
T ss_pred ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEe
Confidence 9999999999999988887665 79999999999999 8888888999999999999999976555 443 3334456
Q ss_pred CCCCCcCC
Q 002346 444 PGNPFIGT 451 (933)
Q Consensus 444 ~~n~~~~~ 451 (933)
.+|||.|.
T Consensus 505 ~~N~~~c~ 512 (562)
T 3a79_B 505 HDNPWDCT 512 (562)
T ss_dssp CSCCBCCC
T ss_pred cCCCcCCC
Confidence 78999763
No 258
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-35 Score=354.66 Aligned_cols=340 Identities=17% Similarity=0.222 Sum_probs=285.5
Q ss_pred CCEEEEEecCCCCccc-----------------cCcccc--CCcccceeecccccccccCC-CccCcCcCceecccccc-
Q 002346 66 NRVTTISLAKSGLSGT-----------------LSPEIS--SLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNN- 124 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~-----------------~~~~~~--~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~- 124 (933)
.+++.|+|++|.|+|. +|..++ ++++|++|+|++|.+.+.+| .|.++++|++|+|++|+
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 5899999999999996 999999 99999999999999999988 89999999999999998
Q ss_pred ccC-CCCCcccCC------CCCCEEEccCCCCCCCCCCCc--cccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEcc
Q 002346 125 FTS-VPTGCFDGL------TNLQVLSLSDNPNLAPWPFPN--ELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLS 195 (933)
Q Consensus 125 l~~-~~~~~~~~l------~~L~~L~Ls~N~~~~~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 195 (933)
+++ ..+..++.+ ++|++|+|++|++.. +|. .++++++|++|+|++|++.|.+| .|+.+++|++|+|+
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~---ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT---FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS---CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCCc---cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 987 334446665 999999999999985 888 99999999999999999998999 99999999999999
Q ss_pred CCcCCCCCCccccc-cc-cchhhcccccCCcccccccccCC--ccCcEEEecCCccCCCCCC-CC-------CCCCCCEE
Q 002346 196 YNNFTGSLPASFAK-SD-IQNLWMNDQQLGLSGTLDVLSGM--TQLRQVWLHKNQFTGPIPD-LS-------KCESLFDL 263 (933)
Q Consensus 196 ~N~l~~~~p~~~~~-~~-l~~l~l~~n~~~~~~~~~~l~~l--~~L~~L~L~~N~l~~~~~~-~~-------~~~~L~~L 263 (933)
+|+++ .+|..+.. .. |++|++++|.+.. .+..+..+ ++|+.|+|++|++++.+|. +. .+.+|+.|
T Consensus 362 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 362 YNQIT-EIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp SSEEE-ECCTTSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred CCccc-cccHhhhhhcccCcEEEccCCcCcc--cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence 99999 89988877 46 9999999999872 23445544 4899999999999998774 66 77899999
Q ss_pred EccCCcccccCcccccCCCCCCEEEccCccCccCCCCCCC----------CccEEeccCCcCCCCCCCCCCCCCchhhhh
Q 002346 264 SLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLFPS----------KVQKVSLDHNNFCKNSSDAGKPCDPQVTTL 333 (933)
Q Consensus 264 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~----------~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 333 (933)
+|++|+++...+..+..+++|+.|+|++|+++...+.... +|+.|+|++|++..++.....
T Consensus 439 ~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~--------- 509 (636)
T 4eco_A 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA--------- 509 (636)
T ss_dssp ECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST---------
T ss_pred ECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhh---------
Confidence 9999999944344456799999999999999944443332 899999999999854322110
Q ss_pred HhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEc------cCccccCcCchhhcCcccCCeEecccCcccCCC
Q 002346 334 LQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINL------ANKLLAGNISPAYANLTSLKNLYLQQNNLTGPI 407 (933)
Q Consensus 334 ~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~L------s~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~ 407 (933)
...+..-..++.+|... .+|..+..+++|+.|+| ++|++.+.+|..|+++++|+.|+|++|+| +.+
T Consensus 510 ------~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~i 581 (636)
T 4eco_A 510 ------TTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKV 581 (636)
T ss_dssp ------TTCTTCCEEECCSSCCS-SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred ------ccCCCcCEEECCCCCCC-CcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Ccc
Confidence 01222223344555554 49999999999999999 56889999999999999999999999999 699
Q ss_pred CcccCCCCCcCEEeccCCcCcccC
Q 002346 408 PDGLTKLASLQNLDVSNNNLSGKV 431 (933)
Q Consensus 408 p~~~~~l~~L~~l~ls~N~l~g~~ 431 (933)
|..+. ++|+.|||++|++...-
T Consensus 582 p~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 582 NEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CSCCC--TTCCEEECCSCTTCEEE
T ss_pred CHhHh--CcCCEEECcCCCCcccc
Confidence 98876 89999999999887543
No 259
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.4e-35 Score=346.01 Aligned_cols=369 Identities=17% Similarity=0.167 Sum_probs=252.9
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSL 144 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 144 (933)
..++.|+|++|++++..+.+|..+++|++|+|++|+|+++.+ .|.++++|++|+|++|.++.+++..|+++++|++|+|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 468889999999988778888999999999999999988877 6888999999999999999888888999999999999
Q ss_pred cCCCCCCCCCCCccccCCccCCeeeccCcccCC-CCChhhcCCCCCCEEEccCCcCCCCCCccccc-ccc----chhhcc
Q 002346 145 SDNPNLAPWPFPNELTKSTSLTTLYMDNANIFG-LIPDFFDSFSNLQNLRLSYNNFTGSLPASFAK-SDI----QNLWMN 218 (933)
Q Consensus 145 s~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~l----~~l~l~ 218 (933)
++|++.. ..+..++++++|++|+|++|.+.+ .+|..|+++++|++|++++|++++..|..+.. ..+ ..|++.
T Consensus 108 ~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 108 VETNLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp TTSCCCC--STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccc--CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 9998887 222358888889999999888877 46888888888888888888887655555443 122 233443
Q ss_pred cccCCccc------------------------------------------------------------------------
Q 002346 219 DQQLGLSG------------------------------------------------------------------------ 226 (933)
Q Consensus 219 ~n~~~~~~------------------------------------------------------------------------ 226 (933)
.|.+....
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 33322110
Q ss_pred --------ccccccCCccCcEEEecCCccCCCCCCCCC------------------------------------------
Q 002346 227 --------TLDVLSGMTQLRQVWLHKNQFTGPIPDLSK------------------------------------------ 256 (933)
Q Consensus 227 --------~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~------------------------------------------ 256 (933)
....+..+++|+.|++++|.+++.++.+..
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCB
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccccc
Confidence 012244456677777777776654433333
Q ss_pred CCCCCEEEccCCcccccC--cccccCCCCCCEEEccCccCccCCCC--CCCCccEEeccCCcCCCCCCCCCCCCCchhhh
Q 002346 257 CESLFDLSLRDNQLTGVV--PASVISLPALLNISLQNNKLQGPYPL--FPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTT 332 (933)
Q Consensus 257 ~~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~ 332 (933)
+++|+.|++++|++++.. |..+..+++|++|++++|.+++..+. ...+|+.|++++|.+.+..+...
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------- 416 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV--------- 416 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCT---------
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhh---------
Confidence 344444444444444322 34444445555555555554443322 12345555555555544322100
Q ss_pred hHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCcccc-CcCchhhcCcccCCeEecccCcccCCCCccc
Q 002346 333 LLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLA-GNISPAYANLTSLKNLYLQQNNLTGPIPDGL 411 (933)
Q Consensus 333 ~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 411 (933)
....+..-..++.+|...+..|..+..+++|+.|+|++|.+. +.+|..|+.+++|+.|+|++|++++..|..|
T Consensus 417 ------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~ 490 (570)
T 2z63_A 417 ------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490 (570)
T ss_dssp ------TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ------hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh
Confidence 001122223345566666677888888899999999999987 6788889999999999999999998889899
Q ss_pred CCCCCcCEEeccCCcCcccCCCC-CC--CcccccCCCCCCcCC
Q 002346 412 TKLASLQNLDVSNNNLSGKVPDF-GS--NVKFTVSPGNPFIGT 451 (933)
Q Consensus 412 ~~l~~L~~l~ls~N~l~g~~p~~-~~--~~~~~~~~~n~~~~~ 451 (933)
..+++|++|++++|+|++.+|.. .. .++...+.+|||.|.
T Consensus 491 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 99999999999999999888753 32 334445678888653
No 260
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3e-34 Score=348.55 Aligned_cols=371 Identities=17% Similarity=0.171 Sum_probs=254.4
Q ss_pred CccccceEeCC----------CCCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceecccc
Q 002346 54 YCEWTGINCDN----------SNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDN 122 (933)
Q Consensus 54 ~C~w~gv~c~~----------~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~ 122 (933)
.|.+..|.|.. ..+++.|+|++|++++..+..|+.+++|++|+|++|.+++.+| .|.++++|++|+|++
T Consensus 3 ~~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 3 TVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp -CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred eeECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 45566677753 2479999999999998888889999999999999999999888 689999999999999
Q ss_pred ccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCC
Q 002346 123 NNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGS 202 (933)
Q Consensus 123 N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 202 (933)
|+++.+++..|+++++|++|+|++|++.. ..|..+.++++|++|+|++|.+.+..|..++.+++|++|+|++|++++.
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQK--IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CccCccChhhhccCCCCCEEECCCCccCc--cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 99999999899999999999999999987 4557899999999999999999999999999999999999999999977
Q ss_pred CCccccc---cccchhhcccccCCccccc--------------------------------------------------c
Q 002346 203 LPASFAK---SDIQNLWMNDQQLGLSGTL--------------------------------------------------D 229 (933)
Q Consensus 203 ~p~~~~~---~~l~~l~l~~n~~~~~~~~--------------------------------------------------~ 229 (933)
.+..+.. ..|++|++..|.+...... .
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 6665542 5788888888876533211 0
Q ss_pred cccCCc--cCcEEEecCCccCCCCCC-CCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccC-----CCC-
Q 002346 230 VLSGMT--QLRQVWLHKNQFTGPIPD-LSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGP-----YPL- 300 (933)
Q Consensus 230 ~l~~l~--~L~~L~L~~N~l~~~~~~-~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-----~p~- 300 (933)
.+.+++ +|+.|+|++|++++.++. +..+++|+.|+|++|++++..|..|..+++|+.|++++|...+. +|.
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence 122222 255555555555554432 45555555555555555555555555555555555554433321 111
Q ss_pred ------CCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhc--------------ccCCCccccCCCCCCCCCCCCC
Q 002346 301 ------FPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAG--------------DMGYPAILSDSWEGNNACDGWP 360 (933)
Q Consensus 301 ------~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~~p 360 (933)
...+|+.|++++|.+.+..+..+..+.... . +.+.. .......-...+.+|...+..|
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~-L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~ 398 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK-Y-LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCC-E-EECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred ChhhcccCCCCCEEECCCCccCCCChhHhccccCCc-E-EECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh
Confidence 124677777777877776554333221000 0 00000 0000111222344555555567
Q ss_pred ccccCCCceeEEEccCccccCcCc-hhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCc
Q 002346 361 FVTCSQGRIITINLANKLLAGNIS-PAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLS 428 (933)
Q Consensus 361 ~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~ 428 (933)
..+..+++|+.|+|++|.+.+.+| ..|.++++|++|+|++|++.+..+..|..+++|+.|++++|.++
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 467 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCB
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccc
Confidence 777778888888888888877666 57777888888888888777666666666666666666666654
No 261
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=1.1e-35 Score=347.60 Aligned_cols=271 Identities=24% Similarity=0.372 Sum_probs=202.0
Q ss_pred hcCCccCCccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeee------Cc
Q 002346 580 TDNFSEANILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCIN------GS 652 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~ 652 (933)
.++|++.+.||+|+||.||+|.. .+|+.||||++.... .....+++.+|++++++++||||+++++++.. ++
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~-~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~ 91 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQEL-SPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPND 91 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCC-CHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccC-CHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCC
Confidence 36899999999999999999965 568999999987652 45556789999999999999999999998765 66
Q ss_pred eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCc---EEEe
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMR---AKVA 729 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~---~kl~ 729 (933)
..++||||+++|+|.+++.... ....+++..++.++.|++.||+|||+ .+|+||||||+||+++.++. +||+
T Consensus 92 ~~~LVmEy~~ggsL~~~L~~~~--~~~~lse~~i~~I~~QLl~aL~yLHs---~gIVHrDLKP~NILl~~~g~~~~vKL~ 166 (676)
T 3qa8_A 92 LPLLAMEYCEGGDLRKYLNQFE--NCCGLKEGPIRTLLSDISSALRYLHE---NRIIHRDLKPENIVLQPGPQRLIHKII 166 (676)
T ss_dssp SCCCEEECCSSCBHHHHHHSSS--CTTCCCSSHHHHHHHHHHHHHHHHHH---TTBCCCCCCSTTEEEECCSSSCEEEEC
T ss_pred eEEEEEEeCCCCCHHHHHHhcc--cCCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEeecCCCceeEEEc
Confidence 7799999999999999997632 22458899999999999999999999 89999999999999997765 9999
Q ss_pred cccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHh--
Q 002346 730 DFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVL-- 807 (933)
Q Consensus 730 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~-- 807 (933)
|||++........ .....||+.|+|||++.+..++.++||||||+++|||++|+.||...... ..|.....
T Consensus 167 DFG~a~~~~~~~~--~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~-----~~~~~~i~~~ 239 (676)
T 3qa8_A 167 DLGYAKELDQGEL--CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQP-----VQWHGKVREK 239 (676)
T ss_dssp SCCCCCBTTSCCC--CCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHH-----HHSSTTCC--
T ss_pred ccccccccccccc--cccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccch-----hhhhhhhhcc
Confidence 9999987654332 24467999999999999999999999999999999999999999754211 01100000
Q ss_pred -----hccCCCCc--ccCCCCC-CChhhHHHHHHHHHHHHHcccCCCCCCCCHHH-----HHHHHhhhh
Q 002346 808 -----ISKENIPK--AIDPNLN-LDEETIESIYRVAELAGHCTAREPQQRPDMGH-----AVNVLGPLV 863 (933)
Q Consensus 808 -----~~~~~~~~--~~d~~l~-~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~e-----vl~~L~~~~ 863 (933)
........ .+...+. ...........+.+++.+|++.||++||++++ ..+.++.+.
T Consensus 240 ~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL 308 (676)
T 3qa8_A 240 SNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSIL 308 (676)
T ss_dssp ----CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHH
T ss_pred cchhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHH
Confidence 00000000 0001111 01112224456889999999999999999987 444454443
No 262
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.4e-35 Score=354.74 Aligned_cols=338 Identities=18% Similarity=0.216 Sum_probs=282.0
Q ss_pred CCEEEEEecCCCCcc-----------------ccCcccc--CCcccceeecccccccccCC-CccCcCcCceecccccc-
Q 002346 66 NRVTTISLAKSGLSG-----------------TLSPEIS--SLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNN- 124 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~-----------------~~~~~~~--~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~- 124 (933)
.+++.|+|++|.|+| .+|+.++ ++++|++|+|++|.+.+.+| .|.++++|++|+|++|+
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 579999999999998 4999988 99999999999999999988 79999999999999998
Q ss_pred ccC--CCCC------cccCCCCCCEEEccCCCCCCCCCCCc--cccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEc
Q 002346 125 FTS--VPTG------CFDGLTNLQVLSLSDNPNLAPWPFPN--ELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRL 194 (933)
Q Consensus 125 l~~--~~~~------~~~~l~~L~~L~Ls~N~~~~~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 194 (933)
|++ +|.. .+..+++|++|+|++|++.. +|. .+.++++|+.|+|++|++. .+| .|+.+++|+.|+|
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~---ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE---FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB---CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCCc---cCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 886 4432 23445599999999999995 888 9999999999999999998 778 8999999999999
Q ss_pred cCCcCCCCCCccccc-cc-cchhhcccccCCcccccccccCCc--cCcEEEecCCccCCCCCCCC------CCCCCCEEE
Q 002346 195 SYNNFTGSLPASFAK-SD-IQNLWMNDQQLGLSGTLDVLSGMT--QLRQVWLHKNQFTGPIPDLS------KCESLFDLS 264 (933)
Q Consensus 195 ~~N~l~~~~p~~~~~-~~-l~~l~l~~n~~~~~~~~~~l~~l~--~L~~L~L~~N~l~~~~~~~~------~~~~L~~L~ 264 (933)
++|+++ .+|..+.. .. |+.|++++|.+. ..+..+..++ +|+.|+|++|++++.+|.+. .+.+|+.|+
T Consensus 603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp CSSCCS-CCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred cCCccc-cchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 999999 89988876 45 999999999987 2234455554 49999999999999887544 456899999
Q ss_pred ccCCcccccCcccc-cCCCCCCEEEccCccCccCCCCCCC----------CccEEeccCCcCCCCCCCCCCCCCchhhhh
Q 002346 265 LRDNQLTGVVPASV-ISLPALLNISLQNNKLQGPYPLFPS----------KVQKVSLDHNNFCKNSSDAGKPCDPQVTTL 333 (933)
Q Consensus 265 L~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~~~----------~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 333 (933)
|++|+|+ .+|..+ ..+++|+.|+|++|+++...+.... +|+.|+|++|+|..++....
T Consensus 680 Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~---------- 748 (876)
T 4ecn_A 680 LSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR---------- 748 (876)
T ss_dssp CCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS----------
T ss_pred ccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhh----------
Confidence 9999999 666655 4899999999999999944443332 79999999999975432210
Q ss_pred HhhhcccCCCcccc-CCCCCCCCCCCCCccccCCCceeEEEccC------ccccCcCchhhcCcccCCeEecccCcccCC
Q 002346 334 LQIAGDMGYPAILS-DSWEGNNACDGWPFVTCSQGRIITINLAN------KLLAGNISPAYANLTSLKNLYLQQNNLTGP 406 (933)
Q Consensus 334 ~~~~~~~~~~~~l~-~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~------N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~ 406 (933)
......++ +++.+|. +..+|..+..+++|+.|+|++ |++.+.+|..|+++++|+.|+|++|+| +.
T Consensus 749 ------~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~ 820 (876)
T 4ecn_A 749 ------ATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RK 820 (876)
T ss_dssp ------TTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred ------hccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-Cc
Confidence 00122233 3444444 445999999999999999976 889999999999999999999999999 79
Q ss_pred CCcccCCCCCcCEEeccCCcCcccCC
Q 002346 407 IPDGLTKLASLQNLDVSNNNLSGKVP 432 (933)
Q Consensus 407 ~p~~~~~l~~L~~l~ls~N~l~g~~p 432 (933)
+|..+. ++|+.|||++|++....+
T Consensus 821 Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 821 VDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp CCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred cCHhhc--CCCCEEECCCCCCCccCh
Confidence 999876 699999999999976554
No 263
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.4e-34 Score=346.71 Aligned_cols=367 Identities=19% Similarity=0.171 Sum_probs=289.0
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSL 144 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 144 (933)
..++.|+|++|+|++..+.+|.++++|++|+|++|+|++++| +|.++++|++|+|++|+|+++++..|.++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 479999999999998888899999999999999999999988 7999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccccCCccCCeeeccCcccCCC-CChhhcCCCCCCEEEccCCcCCCCCCcccccc-------------
Q 002346 145 SDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGL-IPDFFDSFSNLQNLRLSYNNFTGSLPASFAKS------------- 210 (933)
Q Consensus 145 s~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~------------- 210 (933)
++|+++. ..+..|+++++|++|+|++|.+.+. +|..++.+++|++|+|++|+|++..|..+...
T Consensus 132 s~N~l~~--l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 132 VETNLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp TTSCCCC--STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred CCCcCCC--CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 9999998 3456799999999999999999764 68899999999999999999987666554320
Q ss_pred ---------------ccchhhcccccC-----------------------------------------------------
Q 002346 211 ---------------DIQNLWMNDQQL----------------------------------------------------- 222 (933)
Q Consensus 211 ---------------~l~~l~l~~n~~----------------------------------------------------- 222 (933)
.+..+.+..|..
T Consensus 210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 000111111100
Q ss_pred ---------------------------------------------------Ccc------------------cccccccC
Q 002346 223 ---------------------------------------------------GLS------------------GTLDVLSG 233 (933)
Q Consensus 223 ---------------------------------------------------~~~------------------~~~~~l~~ 233 (933)
... ........
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 369 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 369 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCB
T ss_pred hhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccc
Confidence 000 00001123
Q ss_pred CccCcEEEecCCccCCCC--C-CCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCC----CCCCcc
Q 002346 234 MTQLRQVWLHKNQFTGPI--P-DLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPL----FPSKVQ 306 (933)
Q Consensus 234 l~~L~~L~L~~N~l~~~~--~-~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~ 306 (933)
+++|+.|++++|.+.... + .+..+.+|+.|+++.|.+. .++..+..+++|+.+++++|.+....+. ....++
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccc
Confidence 567888888888876422 2 2567788999999999888 4566788889999999998888776553 235788
Q ss_pred EEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCC-CCCccccCCCceeEEEccCccccCcCch
Q 002346 307 KVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACD-GWPFVTCSQGRIITINLANKLLAGNISP 385 (933)
Q Consensus 307 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~ 385 (933)
.++++.|.+.+..+..... ........+.+|+... ..|..+..+++|+.|+|++|+|++.+|.
T Consensus 449 ~l~ls~n~l~~~~~~~~~~----------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~ 512 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNG----------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 512 (635)
T ss_dssp EEECTTSCCEECCTTTTTT----------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred ccccccccccccccccccc----------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChH
Confidence 8999999887765443221 1122233445555443 4678889999999999999999999999
Q ss_pred hhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccCCCCC----CCcccccCCCCCCcCC
Q 002346 386 AYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKVPDFG----SNVKFTVSPGNPFIGT 451 (933)
Q Consensus 386 ~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p~~~----~~~~~~~~~~n~~~~~ 451 (933)
.|+++++|+.|+|++|+|++..|..|..+++|++|||++|+|++.+|... ..++...+.+|||.|.
T Consensus 513 ~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 513 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99999999999999999999999999999999999999999999998643 2345556789999884
No 264
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=4e-35 Score=315.15 Aligned_cols=234 Identities=12% Similarity=0.106 Sum_probs=185.0
Q ss_pred hcCCccCCccccCCCeEEEEEEeC-CCcEEEEEEeccccCC-chhHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP-DGTKIAVKRMESNTMG-NKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
.++|++.+.||+|+||.||+|... +++.||||++...... ....+++.+|+.++.+++||||+++++++.+++..|+|
T Consensus 30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 109 (286)
T 3uqc_A 30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV 109 (286)
T ss_dssp TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence 467999999999999999999664 5899999999876433 34467899999999999999999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+++++|.+++.. . ....++..|+.|+++||+|||+ ++|+||||||+||+++.++.+||+++|
T Consensus 110 ~e~~~g~~L~~~l~~------~-~~~~~~~~i~~ql~~aL~~lH~---~givH~Dikp~NIll~~~g~~kl~~~~----- 174 (286)
T 3uqc_A 110 AEWIRGGSLQEVADT------S-PSPVGAIRAMQSLAAAADAAHR---AGVALSIDHPSRVRVSIDGDVVLAYPA----- 174 (286)
T ss_dssp EECCCEEEHHHHHTT------C-CCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEEETTSCEEECSCC-----
T ss_pred EEecCCCCHHHHHhc------C-CChHHHHHHHHHHHHHHHHHHH---CCCccCCCCcccEEEcCCCCEEEEecc-----
Confidence 999999999999843 2 3556788999999999999999 899999999999999999999997443
Q ss_pred CCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCccc
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAI 817 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (933)
|++ .++.++|||||||++|||+||+.||............ ..........+..+
T Consensus 175 ----------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~---~~~~~~~~~~~~~~ 228 (286)
T 3uqc_A 175 ----------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPA---ERDTAGQPIEPADI 228 (286)
T ss_dssp ----------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEEC---CBCTTSCBCCHHHH
T ss_pred ----------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHH---HHHhccCCCChhhc
Confidence 333 3688999999999999999999999875432210000 00000000000011
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHhhhhh
Q 002346 818 DPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVNVLGPLVE 864 (933)
Q Consensus 818 d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~~L~~~~~ 864 (933)
.+ .....+.+++.+||+.||++| |+.|+++.|+.+..
T Consensus 229 ~~---------~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~ 265 (286)
T 3uqc_A 229 DR---------DIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATA 265 (286)
T ss_dssp CT---------TSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC
T ss_pred cc---------CCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhc
Confidence 11 122457899999999999999 99999999988753
No 265
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5e-35 Score=353.20 Aligned_cols=241 Identities=22% Similarity=0.358 Sum_probs=194.9
Q ss_pred hcCCccCCccccCCCeEEEEEEeC--CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEeeeCce----
Q 002346 580 TDNFSEANILGRGGFGVVYGGELP--DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCINGSE---- 653 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 653 (933)
.++|++.+.||+|+||.||+|... +|+.||||++.... .......+.+|+.++++++|||||++++++...+.
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 157 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSG-DAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDP 157 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSC-CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccC-CHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCc
Confidence 478999999999999999999764 68999999987542 34456788999999999999999999999987655
Q ss_pred -eEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEeccc
Q 002346 654 -RLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFG 732 (933)
Q Consensus 654 -~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfG 732 (933)
.|+||||+++++|.+++. ..+++.+++.++.||++||+|||+ ++||||||||+|||++.+ .+||+|||
T Consensus 158 ~~~lv~E~~~g~~L~~~~~-------~~l~~~~~~~~~~qi~~aL~~lH~---~giiHrDlkp~NIll~~~-~~kl~DFG 226 (681)
T 2pzi_A 158 VGYIVMEYVGGQSLKRSKG-------QKLPVAEAIAYLLEILPALSYLHS---IGLVYNDLKPENIMLTEE-QLKLIDLG 226 (681)
T ss_dssp EEEEEEECCCCEECC-----------CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECSS-CEEECCCT
T ss_pred eeEEEEEeCCCCcHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHH---CCCeecccChHHeEEeCC-cEEEEecc
Confidence 699999999999988773 258999999999999999999999 899999999999999886 89999999
Q ss_pred ccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCC
Q 002346 733 LVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLISKEN 812 (933)
Q Consensus 733 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (933)
+++..... ....||+.|+|||++.++ ++.++|||||||++|||++|..||...... .
T Consensus 227 ~a~~~~~~-----~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~-----------------~ 283 (681)
T 2pzi_A 227 AVSRINSF-----GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVD-----------------G 283 (681)
T ss_dssp TCEETTCC-----SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECS-----------------S
T ss_pred cchhcccC-----CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCcccccc-----------------c
Confidence 99876543 345799999999998765 488999999999999999999887642110 0
Q ss_pred CCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCC-HHHHHHHHhhhh
Q 002346 813 IPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPD-MGHAVNVLGPLV 863 (933)
Q Consensus 813 ~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs-~~evl~~L~~~~ 863 (933)
++ ...........+.+++.+||+.||++||+ ++++.+.|..+.
T Consensus 284 ~~--------~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~ 327 (681)
T 2pzi_A 284 LP--------EDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVL 327 (681)
T ss_dssp CC--------TTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred cc--------ccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHH
Confidence 11 01111222346789999999999999995 666666666554
No 266
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.7e-34 Score=342.95 Aligned_cols=359 Identities=16% Similarity=0.099 Sum_probs=243.0
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSL 144 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 144 (933)
.+++.|+|++|++++..|.+|+++++|++|+|++|.|++.+| .|.++++|++|+|++|.++++++..|+++++|++|+|
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 579999999999998889999999999999999999999977 8999999999999999999999888999999999999
Q ss_pred cCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCC-------------------------------------
Q 002346 145 SDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFS------------------------------------- 187 (933)
Q Consensus 145 s~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~------------------------------------- 187 (933)
++|.+... .+|..++++++|++|+|++|++.+..|..|+.++
T Consensus 136 ~~n~l~~~-~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 214 (606)
T 3vq2_A 136 AHNFIHSC-KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214 (606)
T ss_dssp CSSCCCCC-CCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred CCCcccce-echHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence 99998752 3689999999999999999998887665443332
Q ss_pred --------------------------------------------------------------------------------
Q 002346 188 -------------------------------------------------------------------------------- 187 (933)
Q Consensus 188 -------------------------------------------------------------------------------- 187 (933)
T Consensus 215 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 294 (606)
T 3vq2_A 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294 (606)
T ss_dssp CSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEES
T ss_pred ccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecC
Confidence
Q ss_pred -------------CCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCC---C
Q 002346 188 -------------NLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGP---I 251 (933)
Q Consensus 188 -------------~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~---~ 251 (933)
+|++|++++|++ +.+|.. ....|++|++.+|...... .+..+++|+.|+|++|++++. +
T Consensus 295 ~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~ 369 (606)
T 3vq2_A 295 VSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCS 369 (606)
T ss_dssp CCCCCCCCCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECC
T ss_pred ccchhhhhccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccch---hhccCCCCCEEECcCCccCCCcchh
Confidence 223333333333 233311 1122333333333111110 233455555555555555544 1
Q ss_pred CCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCC-C---CCCCccEEeccCCcCCCCCCCCCCCCC
Q 002346 252 PDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYP-L---FPSKVQKVSLDHNNFCKNSSDAGKPCD 327 (933)
Q Consensus 252 ~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~---~~~~l~~L~l~~n~~~~~~~~~~~~~~ 327 (933)
..+..+++|+.|+|++|++++ +|..+..+++|+.|++++|++++..| . ...+|+.|++++|.+.+..+.....+.
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 224445555555555555552 34445555555555555555554443 1 123445555555555443332221110
Q ss_pred c-h-----hhhhHh--hhcccCCCccc-cCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEec
Q 002346 328 P-Q-----VTTLLQ--IAGDMGYPAIL-SDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYL 398 (933)
Q Consensus 328 ~-~-----~~~~~~--~~~~~~~~~~l-~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L 398 (933)
. + ...+.. ++..+.....+ ..++.+|...+..|..+..+++|+.|+|++|++++.+|..|+++++|+.|+|
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 0 0 000000 11122222233 3455667777777888999999999999999999999999999999999999
Q ss_pred ccCcccCCCCcccCCCC-CcCEEeccCCcCcccCC
Q 002346 399 QQNNLTGPIPDGLTKLA-SLQNLDVSNNNLSGKVP 432 (933)
Q Consensus 399 ~~N~l~g~~p~~~~~l~-~L~~l~ls~N~l~g~~p 432 (933)
++|+|+ .+|..+..++ +|++|++++|++.+..+
T Consensus 529 ~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 529 SFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999999 7888899997 59999999999998776
No 267
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-34 Score=331.84 Aligned_cols=322 Identities=20% Similarity=0.229 Sum_probs=280.8
Q ss_pred ceEeCCCCCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCC
Q 002346 59 GINCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLT 137 (933)
Q Consensus 59 gv~c~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 137 (933)
+..|... .+.++.++++++ .+|..+. ++|++|+|++|+|+++.+ .|.++++|++|+|++|.++++.+..|.+++
T Consensus 6 ~C~C~~~--~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 80 (477)
T 2id5_A 6 RCECSAQ--DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF 80 (477)
T ss_dssp TCEEETT--TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCeECCC--CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc
Confidence 4556543 357899999998 6776654 689999999999999887 899999999999999999999999999999
Q ss_pred CCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhc
Q 002346 138 NLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWM 217 (933)
Q Consensus 138 ~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l 217 (933)
+|++|+|++|++.. ..+..|.++++|++|+|++|++.+..+..|..+++|++|+|++|++++..|..|.
T Consensus 81 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------- 149 (477)
T 2id5_A 81 NLRTLGLRSNRLKL--IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS--------- 149 (477)
T ss_dssp TCCEEECCSSCCCS--CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST---------
T ss_pred cCCEEECCCCcCCc--cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhcc---------
Confidence 99999999999988 3345689999999999999999999999999999999999999999976676654
Q ss_pred ccccCCcccccccccCCccCcEEEecCCccCCCCCC-CCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCcc
Q 002346 218 NDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPD-LSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQG 296 (933)
Q Consensus 218 ~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 296 (933)
++++|+.|+|++|++++.++. +..+++|+.|+|++|++.+..+..|..+++|+.|+|++|.+.+
T Consensus 150 ---------------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 150 ---------------GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp ---------------TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred ---------------CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 489999999999999987764 8899999999999999999888899999999999999999887
Q ss_pred CCCCC---CCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEE
Q 002346 297 PYPLF---PSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITIN 373 (933)
Q Consensus 297 ~~p~~---~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~ 373 (933)
.+|.. ..+|+.|+|++|++...+ +..+..+++|+.|+
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~~~----------------------------------------~~~~~~l~~L~~L~ 254 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTAVP----------------------------------------YLAVRHLVYLRFLN 254 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCSCC----------------------------------------HHHHTTCTTCCEEE
T ss_pred ccCcccccCccccEEECcCCcccccC----------------------------------------HHHhcCccccCeeE
Confidence 76643 238999999999885432 13466789999999
Q ss_pred ccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccCCCCC---CCcccccCCCCCCcC
Q 002346 374 LANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKVPDFG---SNVKFTVSPGNPFIG 450 (933)
Q Consensus 374 Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p~~~---~~~~~~~~~~n~~~~ 450 (933)
|++|.+++..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+... ..++...+.+|||.|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 99999999888899999999999999999999999999999999999999999998877532 234445678999977
Q ss_pred C
Q 002346 451 T 451 (933)
Q Consensus 451 ~ 451 (933)
.
T Consensus 335 ~ 335 (477)
T 2id5_A 335 D 335 (477)
T ss_dssp S
T ss_pred c
Confidence 4
No 268
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5e-34 Score=329.28 Aligned_cols=360 Identities=17% Similarity=0.170 Sum_probs=290.4
Q ss_pred EEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceecccccccc-CCCCCcccCCCCCCEEEccC
Q 002346 69 TTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFT-SVPTGCFDGLTNLQVLSLSD 146 (933)
Q Consensus 69 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~ 146 (933)
+.++.++++++ .+|. + .++|++|+|++|.|++.+| .|.++++|++|+|++|.+. .+++..|.++++|++|+|++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 46889999998 5665 3 3799999999999999877 7999999999999999997 67788899999999999999
Q ss_pred CCCCCCCCCCccccCCccCCeeeccCcccCCCCChh--hcCCCCCCEEEccCCcCCCCCCcc-ccc-cccchhhcccccC
Q 002346 147 NPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDF--FDSFSNLQNLRLSYNNFTGSLPAS-FAK-SDIQNLWMNDQQL 222 (933)
Q Consensus 147 N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~-~~~-~~l~~l~l~~n~~ 222 (933)
|++.. ..|..+.++++|++|+|++|++++.++.. |..+++|++|+|++|++++..|.. +.. ..|++|++++|.+
T Consensus 89 n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 89 NQFLQ--LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp CTTCE--ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CccCc--cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 99988 56889999999999999999999866655 999999999999999999887877 443 6799999999987
Q ss_pred CcccccccccCC--ccCcEEEecCCccCCCCCC---------CCCCCCCCEEEccCCcccccCcccccCC---CCCCEEE
Q 002346 223 GLSGTLDVLSGM--TQLRQVWLHKNQFTGPIPD---------LSKCESLFDLSLRDNQLTGVVPASVISL---PALLNIS 288 (933)
Q Consensus 223 ~~~~~~~~l~~l--~~L~~L~L~~N~l~~~~~~---------~~~~~~L~~L~L~~N~l~~~~p~~l~~l---~~L~~L~ 288 (933)
..... ..+..+ .+|+.|++++|.+.+..+. +..+++|+.|+|++|++++.+|..+..+ ++|+.|+
T Consensus 167 ~~~~~-~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 167 KSICE-EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp SCCCT-TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred cccCh-hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 64433 233333 6899999999999886653 3466889999999999998888877654 7888888
Q ss_pred ccCccCccCCCCC---------------CCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCC
Q 002346 289 LQNNKLQGPYPLF---------------PSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGN 353 (933)
Q Consensus 289 Ls~N~l~~~~p~~---------------~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 353 (933)
+++|.+.+..... ..+++.|++++|++.+..+..+.. .+..-..++.+|
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----------------l~~L~~L~Ls~n 309 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH----------------FTDLEQLTLAQN 309 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT----------------CTTCCEEECTTS
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc----------------CCCCCEEECCCC
Confidence 8888666532110 146888888888887765443221 111222344555
Q ss_pred CCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccCCC
Q 002346 354 NACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKVPD 433 (933)
Q Consensus 354 ~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p~ 433 (933)
...+..|..+..+++|+.|+|++|++++..|..|+++++|+.|+|++|++++..|..|..+++|++|+|++|+|++.++.
T Consensus 310 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh
Confidence 55556677888999999999999999998899999999999999999999999999999999999999999999987775
Q ss_pred CC---CCcccccCCCCCCcCC
Q 002346 434 FG---SNVKFTVSPGNPFIGT 451 (933)
Q Consensus 434 ~~---~~~~~~~~~~n~~~~~ 451 (933)
.. ..++...+.+|||.|.
T Consensus 390 ~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 390 IFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TTTTCTTCCEEECCSSCBCCC
T ss_pred HhccCCcccEEEccCCCcccC
Confidence 42 3444556788998764
No 269
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.1e-33 Score=339.58 Aligned_cols=369 Identities=21% Similarity=0.229 Sum_probs=291.8
Q ss_pred CCEEEEEecCCCCccccCccccCCcc--cceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEE
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQ--LETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVL 142 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~--L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 142 (933)
..++.|++++|.+++..|..+..++. |++|+|++|.+++.+| .|..+++|++|+|++|+++++++..|.++++|++|
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence 46889999999999998999988866 9999999999999887 79999999999999999999999899999999999
Q ss_pred EccCCCCCCCC---CCCc----cccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCC-Cc-ccc---cc
Q 002346 143 SLSDNPNLAPW---PFPN----ELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSL-PA-SFA---KS 210 (933)
Q Consensus 143 ~Ls~N~~~~~~---~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~-~~~---~~ 210 (933)
+|++|...... .+|. .+..+++|++|++++|++.+..+..|..+++|++|+|++|.+++.. +. .|. ..
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 99987654311 2343 7888999999999999999999999999999999999999865422 22 222 24
Q ss_pred ccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCC--CCCCCCCCCEEEccCCcccccCcccccCCCCCCEEE
Q 002346 211 DIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIP--DLSKCESLFDLSLRDNQLTGVVPASVISLPALLNIS 288 (933)
Q Consensus 211 ~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~--~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 288 (933)
.++.|++.+|.+.... ...+..+++|+.|+|++|++++.++ .+.++++|+.|+|++|++.+..+..|..+++|+.|+
T Consensus 382 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 382 PLHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp CCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred cCceEECCCCCCCeEC-hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 6888899988876433 3567788999999999999987655 488889999999999999888888888889999999
Q ss_pred ccCccCc--cCCCCC---CCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCC----CC
Q 002346 289 LQNNKLQ--GPYPLF---PSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACD----GW 359 (933)
Q Consensus 289 Ls~N~l~--~~~p~~---~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~ 359 (933)
+++|.++ +.+|.. ..+|+.|+|++|++.+..+..+..+ ...-..++.+|...+ .+
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l----------------~~L~~L~Ls~N~l~~~~~~~~ 524 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL----------------EKLEILDLQHNNLARLWKHAN 524 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC----------------TTCCEEECCSSCCGGGGSTTS
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc----------------cccCEEeCCCCCccccchhhc
Confidence 9999887 445543 3578889999998887655432211 111122233333321 11
Q ss_pred ----CccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccCCCC-
Q 002346 360 ----PFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKVPDF- 434 (933)
Q Consensus 360 ----p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p~~- 434 (933)
+..+..+++|+.|+|++|+++...+..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++.+|..
T Consensus 525 ~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred cCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence 223678899999999999999655567999999999999999999777778899999999999999999988752
Q ss_pred ---CCCcccccCCCCCCcCC
Q 002346 435 ---GSNVKFTVSPGNPFIGT 451 (933)
Q Consensus 435 ---~~~~~~~~~~~n~~~~~ 451 (933)
...++...+.+|||.|.
T Consensus 605 ~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 605 GPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp HHHHTTCSEEECTTCCCCBC
T ss_pred cccccccCEEEccCCCcccC
Confidence 23455566789999885
No 270
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=1.8e-34 Score=327.15 Aligned_cols=246 Identities=15% Similarity=0.160 Sum_probs=182.1
Q ss_pred hcCCccCCccccCCCeEEEEEE-eCCCcEEEEEEecccc-CCchhHHHHHHHHHHHHhcCC-Cccee-------------
Q 002346 580 TDNFSEANILGRGGFGVVYGGE-LPDGTKIAVKRMESNT-MGNKGLSEFQAEIAVLTKVRH-RHLVA------------- 643 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h-~niv~------------- 643 (933)
..+|...+.||+|+||.||+|. ..+|+.||||++.... ......+.|.+|+.+++.++| +|...
T Consensus 77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T 3dzo_A 77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 156 (413)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence 3457788999999999999996 5679999999987432 223346789999999999977 22111
Q ss_pred --------EEeEeee-----CceeEEEEeecCCCChhhHhhhcc--cCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCe
Q 002346 644 --------LLGYCIN-----GSERLLVYEYMPRGTLAQHLFEWH--DHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSF 708 (933)
Q Consensus 644 --------l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~~~--~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~i 708 (933)
+..++.. ....+++|+++ +++|.+++.... ......+++..++.++.|+++||+|||+ ++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~i 232 (413)
T 3dzo_A 157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH---YGL 232 (413)
T ss_dssp EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH---TTE
T ss_pred cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHh---CCc
Confidence 1111111 12356777765 789999885321 1223568899999999999999999999 899
Q ss_pred EecCCCCCcEEecCCCcEEEecccccccCCCCCceeecccccccCccccccc----------CCCCCCCccchHhHHHHH
Q 002346 709 IHRDLKPSNILIGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYA----------ATGRVTTKIDVYAFGVVL 778 (933)
Q Consensus 709 vH~Dik~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~Dv~SlG~~l 778 (933)
+||||||+|||++.++.+||+|||+++..... .....| +.|+|||++ ....++.++|||||||++
T Consensus 233 iHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil 307 (413)
T 3dzo_A 233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAI 307 (413)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTEE----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHH
T ss_pred ccCCcccceEEEecCCeEEEEeccceeecCCc----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHH
Confidence 99999999999999999999999998865432 344578 999999998 556688999999999999
Q ss_pred HHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 779 METITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 779 ~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
|||++|+.||........ ....+...... ...+.+++.+||+.||++||++.++++
T Consensus 308 ~elltg~~Pf~~~~~~~~----------------~~~~~~~~~~~-------~~~~~~li~~~l~~dP~~Rpt~~~~l~ 363 (413)
T 3dzo_A 308 YWIWCADLPNTDDAALGG----------------SEWIFRSCKNI-------PQPVRALLEGFLRYPKEDRLLPLQAME 363 (413)
T ss_dssp HHHHHSSCCCCTTGGGSC----------------SGGGGSSCCCC-------CHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHCCCCCCCcchhhh----------------HHHHHhhcccC-------CHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 999999999976432211 11111111111 145789999999999999999888764
No 271
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=1e-33 Score=307.00 Aligned_cols=230 Identities=21% Similarity=0.288 Sum_probs=178.3
Q ss_pred hcCCccC-CccccCCCeEEEEEEe-CCCcEEEEEEeccccCCchhHHHHHHHHHHH-HhcCCCcceeEEeEeee----Cc
Q 002346 580 TDNFSEA-NILGRGGFGVVYGGEL-PDGTKIAVKRMESNTMGNKGLSEFQAEIAVL-TKVRHRHLVALLGYCIN----GS 652 (933)
Q Consensus 580 ~~~~~~~-~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l~~~~~~----~~ 652 (933)
.++|.+. +.||+|+||.||+|.. .+++.||+|++... ..+.+|+.++ +..+||||+++++++.. +.
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 88 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-------PKARREVELHWRASQCPHIVRIVDVYENLYAGRK 88 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-------HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCc
Confidence 3567776 7899999999999955 57899999998643 4677888887 55589999999999876 67
Q ss_pred eeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecC---CCcEEEe
Q 002346 653 ERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGD---DMRAKVA 729 (933)
Q Consensus 653 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~---~~~~kl~ 729 (933)
..++||||+++|+|.+++... ....+++.+++.++.|++.||+|||+ ++|+||||||+||+++. ++.+||+
T Consensus 89 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~kl~ 162 (299)
T 3m2w_A 89 CLLIVMECLDGGELFSRIQDR---GDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLT 162 (299)
T ss_dssp EEEEEECCCCSCBHHHHHHHC---TTCCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEEC
T ss_pred eEEEEEeecCCCcHHHHHHhc---cCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEecCCCCCcEEEe
Confidence 789999999999999999762 22469999999999999999999999 89999999999999998 7889999
Q ss_pred cccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHhhc
Q 002346 730 DFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALDDTMPDDRAHLVTWFRRVLIS 809 (933)
Q Consensus 730 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~ 809 (933)
|||++.... +..++.++|||||||++|||++|+.||........ .
T Consensus 163 Dfg~a~~~~-----------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~----------~-- 207 (299)
T 3m2w_A 163 DFGFAKETT-----------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI----------S-- 207 (299)
T ss_dssp CCTTCEECT-----------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------------------
T ss_pred ccccccccc-----------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhh----------h--
Confidence 999886432 24567899999999999999999999976432110 0
Q ss_pred cCCCCcccCCCCCCChh-hHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002346 810 KENIPKAIDPNLNLDEE-TIESIYRVAELAGHCTAREPQQRPDMGHAVN 857 (933)
Q Consensus 810 ~~~~~~~~d~~l~~~~~-~~~~~~~~~~li~~cl~~~P~~RPs~~evl~ 857 (933)
................. .......+.+++.+|++.||++||++.|+++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 208 PGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp CCSCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHhhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 00000000011110110 0112356789999999999999999999986
No 272
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.9e-33 Score=331.47 Aligned_cols=313 Identities=19% Similarity=0.200 Sum_probs=233.7
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCCCccCcCcCceeccccccccCCC-CCcccCCCCCCEEEc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVP-TGCFDGLTNLQVLSL 144 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L 144 (933)
.+++.|+|++|.+++..|.+|+.+++|++|+|++|.|+.+++. .+++|++|+|++|++++++ +..|+++++|++|+|
T Consensus 76 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L 153 (562)
T 3a79_B 76 SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153 (562)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEE
T ss_pred CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEec
Confidence 5799999999999998899999999999999999999965545 8999999999999999987 478999999999999
Q ss_pred cCCCCCCCCCCCccccCCccC--CeeeccCccc--CCCCChhhcCCC---------------------------------
Q 002346 145 SDNPNLAPWPFPNELTKSTSL--TTLYMDNANI--FGLIPDFFDSFS--------------------------------- 187 (933)
Q Consensus 145 s~N~~~~~~~~p~~~~~l~~L--~~L~L~~n~l--~~~~p~~~~~l~--------------------------------- 187 (933)
++|++.. ..+..+++| +.|++++|++ ++..|..|..+.
T Consensus 154 ~~n~l~~-----~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l 228 (562)
T 3a79_B 154 SAAKFRQ-----LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228 (562)
T ss_dssp ECSBCCT-----TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEE
T ss_pred CCCcccc-----CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecc
Confidence 9999876 245555666 9999999999 788777776644
Q ss_pred ------------------------------------------------CCCEEEccCCcCCCCCCccccc----------
Q 002346 188 ------------------------------------------------NLQNLRLSYNNFTGSLPASFAK---------- 209 (933)
Q Consensus 188 ------------------------------------------------~L~~L~L~~N~l~~~~p~~~~~---------- 209 (933)
+|++|++++|+++|.+|..+..
T Consensus 229 ~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~ 308 (562)
T 3a79_B 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM 308 (562)
T ss_dssp ECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEE
T ss_pred cccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhee
Confidence 6777777777777777776521
Q ss_pred ----------------------cccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCC-CCCCCCCCCEEEcc
Q 002346 210 ----------------------SDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIP-DLSKCESLFDLSLR 266 (933)
Q Consensus 210 ----------------------~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~L~~L~L~ 266 (933)
..+++|++++|.+.... ....+++|++|+|++|++++.+| .+..+++|+.|+|+
T Consensus 309 ~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 385 (562)
T 3a79_B 309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385 (562)
T ss_dssp EEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECC
T ss_pred hhhcccceeecChhhhhhhhccCcceEEEccCCCccccc---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECC
Confidence 12334444444332111 11455666666666666666444 36666666666666
Q ss_pred CCcccc--cCcccccCCCCCCEEEccCccCccCCCCC----CCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhccc
Q 002346 267 DNQLTG--VVPASVISLPALLNISLQNNKLQGPYPLF----PSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDM 340 (933)
Q Consensus 267 ~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (933)
+|++++ .+|..+..+++|++|+|++|++++.+|.. ..+|+.|+|++|++.+
T Consensus 386 ~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------- 442 (562)
T 3a79_B 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG----------------------- 442 (562)
T ss_dssp SSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG-----------------------
T ss_pred CCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc-----------------------
Confidence 666664 22455666666666666666666644321 2456666666666643
Q ss_pred CCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcc-cCCCCCcCE
Q 002346 341 GYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDG-LTKLASLQN 419 (933)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~~~l~~L~~ 419 (933)
.+|..+. ++|+.|+|++|+++ .+|..+.++++|+.|+|++|+|+ .+|.. +..+++|+.
T Consensus 443 -----------------~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 443 -----------------SVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQY 501 (562)
T ss_dssp -----------------GGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCC
T ss_pred -----------------chhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCE
Confidence 2222222 68999999999999 68888889999999999999999 66666 999999999
Q ss_pred EeccCCcCcccCC
Q 002346 420 LDVSNNNLSGKVP 432 (933)
Q Consensus 420 l~ls~N~l~g~~p 432 (933)
|++++|++++..|
T Consensus 502 L~l~~N~~~c~c~ 514 (562)
T 3a79_B 502 IWLHDNPWDCTCP 514 (562)
T ss_dssp EECCSCCBCCCHH
T ss_pred EEecCCCcCCCcc
Confidence 9999999998776
No 273
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.7e-34 Score=333.03 Aligned_cols=358 Identities=17% Similarity=0.174 Sum_probs=245.7
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSL 144 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 144 (933)
.+++.|+|++|++++..|..|..+++|++|+|++|+|++.+| .|.++++|++|+|++|+|+.+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEec
Confidence 579999999999998888899999999999999999999877 899999999999999999988876 7999999999
Q ss_pred cCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCC--CEEEccCCcC--CCCCCccccc-----------
Q 002346 145 SDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNL--QNLRLSYNNF--TGSLPASFAK----------- 209 (933)
Q Consensus 145 s~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L--~~L~L~~N~l--~~~~p~~~~~----------- 209 (933)
++|++... .+|..++++++|++|+|++|++.+ ..+..+++| ++|+|++|++ ++..|..+..
T Consensus 98 ~~N~l~~~-~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 98 SFNAFDAL-PICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CSSCCSSC-CCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred cCCccccc-cchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 99998762 367899999999999999999977 467777888 9999999999 7777777755
Q ss_pred ----------------cccchhhcccccC-----CcccccccccCC---------------------------ccCcEEE
Q 002346 210 ----------------SDIQNLWMNDQQL-----GLSGTLDVLSGM---------------------------TQLRQVW 241 (933)
Q Consensus 210 ----------------~~l~~l~l~~n~~-----~~~~~~~~l~~l---------------------------~~L~~L~ 241 (933)
..|+.|++..|.. ...+.++.+..+ ++|+.|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 2344444444430 001111122222 2566666
Q ss_pred ecCCccCCCCCC-C-----CCCCCCCEEEccCCcccccCc-ccc-------------------------cCCCCCCEEEc
Q 002346 242 LHKNQFTGPIPD-L-----SKCESLFDLSLRDNQLTGVVP-ASV-------------------------ISLPALLNISL 289 (933)
Q Consensus 242 L~~N~l~~~~~~-~-----~~~~~L~~L~L~~N~l~~~~p-~~l-------------------------~~l~~L~~L~L 289 (933)
+++|+++|.+|. + ..+++|+.+++++|.+ .+| ..+ ..+++|++|++
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 331 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred eecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEe
Confidence 666666655553 4 6667777777766666 333 222 34455555555
Q ss_pred cCccCccCCCCC---CCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccc-cCCCCCCCCCCCCCcc-cc
Q 002346 290 QNNKLQGPYPLF---PSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAIL-SDSWEGNNACDGWPFV-TC 364 (933)
Q Consensus 290 s~N~l~~~~p~~---~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~p~~-~~ 364 (933)
++|++++.+|.. ..+|+.|+|++|++.+. ..++..+.....+ ..++.+|...+.+|.. +.
T Consensus 332 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l---------------~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 332 SNNLLTDTVFENCGHLTELETLILQMNQLKEL---------------SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH---------------HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred ECCccChhhhhhhccCCCCCEEEccCCccCcc---------------ccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 555555544432 23455555555555321 0111112222223 2344445544446664 56
Q ss_pred CCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccCCC-CCC--Ccccc
Q 002346 365 SQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKVPD-FGS--NVKFT 441 (933)
Q Consensus 365 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p~-~~~--~~~~~ 441 (933)
.+++|+.|+|++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|++|++++|+|++.++. +.. .++..
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEE
Confidence 678888888888888877777665 68888888888888 7888777888888888888888865444 332 33334
Q ss_pred cCCCCCCcC
Q 002346 442 VSPGNPFIG 450 (933)
Q Consensus 442 ~~~~n~~~~ 450 (933)
.+.+|||.|
T Consensus 474 ~l~~N~~~c 482 (520)
T 2z7x_B 474 WLHTNPWDC 482 (520)
T ss_dssp ECCSSCBCC
T ss_pred ECcCCCCcc
Confidence 567788765
No 274
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=334.94 Aligned_cols=351 Identities=17% Similarity=0.164 Sum_probs=282.0
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSL 144 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 144 (933)
..++.|+|++|++++..+.+|+++++|++|+|++|.+++.+| .|.++++|++|+|++|+++.++...|+++++|++|+|
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 579999999999998888899999999999999999999887 7999999999999999999999888999999999999
Q ss_pred cCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCC----CEEEccCCcCCCCCCcccccc----------
Q 002346 145 SDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNL----QNLRLSYNNFTGSLPASFAKS---------- 210 (933)
Q Consensus 145 s~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L----~~L~L~~N~l~~~~p~~~~~~---------- 210 (933)
++|.+... .+|..++++++|++|++++|++.+..+..|+.+++| ..|++++|.+++..|..+...
T Consensus 132 ~~n~l~~~-~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 210 (570)
T 2z63_A 132 AHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210 (570)
T ss_dssp CSSCCCCC-CCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred CCCcccee-cChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccc
Confidence 99998762 368999999999999999999998888877777777 677777777765444333221
Q ss_pred ------------------------------------------------------------------------ccchhhcc
Q 002346 211 ------------------------------------------------------------------------DIQNLWMN 218 (933)
Q Consensus 211 ------------------------------------------------------------------------~l~~l~l~ 218 (933)
.++.|++.
T Consensus 211 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 290 (570)
T 2z63_A 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290 (570)
T ss_dssp CSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred cccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence 22233333
Q ss_pred cccCCc----------------------cccc------------------ccccCCccCcEEEecCCccCCCC---CCCC
Q 002346 219 DQQLGL----------------------SGTL------------------DVLSGMTQLRQVWLHKNQFTGPI---PDLS 255 (933)
Q Consensus 219 ~n~~~~----------------------~~~~------------------~~l~~l~~L~~L~L~~N~l~~~~---~~~~ 255 (933)
+|.+.. .... .....+++|+.|++++|++++.. ..+.
T Consensus 291 ~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 370 (570)
T 2z63_A 291 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370 (570)
T ss_dssp SCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred CccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccc
Confidence 332221 0000 00035677888888888887653 3477
Q ss_pred CCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCC----CCCCccEEeccCCcCCCCCCCCCCCCCchhh
Q 002346 256 KCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPL----FPSKVQKVSLDHNNFCKNSSDAGKPCDPQVT 331 (933)
Q Consensus 256 ~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~ 331 (933)
.+++|+.|++++|++++..+ .+..+++|+.|++++|.+++..|. ...+|+.|++++|.+.+..+..+..
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------ 443 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------ 443 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT------
T ss_pred ccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc------
Confidence 88999999999999996544 499999999999999999987662 2468999999999997765433221
Q ss_pred hhHhhhcccCCCccccCCCCCCCCC-CCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcc
Q 002346 332 TLLQIAGDMGYPAILSDSWEGNNAC-DGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDG 410 (933)
Q Consensus 332 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~ 410 (933)
.+..-...+.+|... +.+|..+..+++|+.|+|++|++++..|..|+++++|+.|+|++|++++..|..
T Consensus 444 ----------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 513 (570)
T 2z63_A 444 ----------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513 (570)
T ss_dssp ----------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ----------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHH
Confidence 112223344555554 468999999999999999999999999999999999999999999999988889
Q ss_pred cCCCCCcCEEeccCCcCcccCCCC
Q 002346 411 LTKLASLQNLDVSNNNLSGKVPDF 434 (933)
Q Consensus 411 ~~~l~~L~~l~ls~N~l~g~~p~~ 434 (933)
|..+++|+.|++++|+++|.+|..
T Consensus 514 ~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 514 FDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTTCTTCCEEECCSSCBCCCTTTT
T ss_pred hhcccCCcEEEecCCcccCCCcch
Confidence 999999999999999999999864
No 275
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=2.3e-34 Score=317.82 Aligned_cols=245 Identities=15% Similarity=0.163 Sum_probs=186.4
Q ss_pred hcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccC------CchhHHHHHHHHHHHHhcC---------CCcceeE
Q 002346 580 TDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTM------GNKGLSEFQAEIAVLTKVR---------HRHLVAL 644 (933)
Q Consensus 580 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~------~~~~~~~~~~E~~~l~~l~---------h~niv~l 644 (933)
.++|++.+.||+|+||.||+|.. +|+.||||++..... .....+.+.+|+.+++.++ |||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 46789999999999999999987 789999999987532 2334578999999999986 6666666
Q ss_pred EeEe-----------------ee-------------CceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHH
Q 002346 645 LGYC-----------------IN-------------GSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVA 694 (933)
Q Consensus 645 ~~~~-----------------~~-------------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~ 694 (933)
.+.+ .+ +...++||||+++|++.+.+.+ ..+++.+++.++.||+
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~------~~~~~~~~~~i~~qi~ 171 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT------KLSSLATAKSILHQLT 171 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT------TCCCHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh------cCCCHHHHHHHHHHHH
Confidence 6543 32 6789999999999987777633 4589999999999999
Q ss_pred HHHHHhh-hccCCCeEecCCCCCcEEecCCC--------------------cEEEecccccccCCCCCceeecccccccC
Q 002346 695 RGVEYLH-SLAQQSFIHRDLKPSNILIGDDM--------------------RAKVADFGLVKNAPDGKYSVETRLAGTFG 753 (933)
Q Consensus 695 ~~l~~LH-~~~~~~ivH~Dik~~Nill~~~~--------------------~~kl~DfGla~~~~~~~~~~~~~~~gt~~ 753 (933)
.||+||| + ++|+||||||+|||++.++ .+||+|||+|+..... ...||+.
T Consensus 172 ~aL~~lH~~---~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~------~~~gt~~ 242 (336)
T 2vuw_A 172 ASLAVAEAS---LRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG------IVVFCDV 242 (336)
T ss_dssp HHHHHHHHH---HCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT------EEECCCC
T ss_pred HHHHHHHHh---CCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC------cEEEeec
Confidence 9999999 8 8999999999999999887 8999999999865432 2479999
Q ss_pred cccccccCCCCCCCccchHhHHHH-HHHHHcCCCCCCCCCCchhhHHHHHHHHHhhccCCCCcccCCCCCCChhhHHHHH
Q 002346 754 YLAPEYAATGRVTTKIDVYAFGVV-LMETITGRKALDDTMPDDRAHLVTWFRRVLISKENIPKAIDPNLNLDEETIESIY 832 (933)
Q Consensus 754 y~aPE~~~~~~~~~~~Dv~SlG~~-l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 832 (933)
|+|||++.+.. +.++||||+|++ .+++++|..||... ............ ...... ............
T Consensus 243 y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~-----~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~s~ 310 (336)
T 2vuw_A 243 SMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNV-----LWLHYLTDKMLK-QMTFKT-----KCNTPAMKQIKR 310 (336)
T ss_dssp TTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHH-----HHHHHHHHHHHH-TCCCSS-----CCCSHHHHHHHH
T ss_pred ccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcch-----hhhhHHHHhhhh-hhccCc-----ccchhhhhhcCH
Confidence 99999998665 889999998777 77888899887321 000001111111 111110 111223345567
Q ss_pred HHHHHHHHcccCCCCCCCCHHHHH-H
Q 002346 833 RVAELAGHCTAREPQQRPDMGHAV-N 857 (933)
Q Consensus 833 ~~~~li~~cl~~~P~~RPs~~evl-~ 857 (933)
++.+++.+||+.| |++|++ +
T Consensus 311 ~~~dli~~~L~~d-----sa~e~l~~ 331 (336)
T 2vuw_A 311 KIQEFHRTMLNFS-----SATDLLCQ 331 (336)
T ss_dssp HHHHHHHHGGGSS-----SHHHHHHH
T ss_pred HHHHHHHHHhccC-----CHHHHHhc
Confidence 7899999999976 899987 5
No 276
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=341.83 Aligned_cols=237 Identities=18% Similarity=0.174 Sum_probs=164.4
Q ss_pred CCEEEccCCcCCCCCCccccc-cccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCC-CCCCCCCCCEEEcc
Q 002346 189 LQNLRLSYNNFTGSLPASFAK-SDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIP-DLSKCESLFDLSLR 266 (933)
Q Consensus 189 L~~L~L~~N~l~~~~p~~~~~-~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~L~~L~L~ 266 (933)
|+.|+|++|.+++..|..|.. ..|+.|++.+|.+.... ...|.++++|+.|+|++|++++..+ .+..+++|+.|+|+
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 344444444444333333332 35666666666654322 2468889999999999999998876 58999999999999
Q ss_pred CCcccccCcccccCCCCCCEEEccCccCccCCC------------------C-------------------------CCC
Q 002346 267 DNQLTGVVPASVISLPALLNISLQNNKLQGPYP------------------L-------------------------FPS 303 (933)
Q Consensus 267 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p------------------~-------------------------~~~ 303 (933)
+|++++..+..|..+++|+.|+|++|.+++... . ...
T Consensus 347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~ 426 (844)
T 3j0a_A 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426 (844)
T ss_dssp SCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCT
T ss_pred CCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCC
Confidence 999998888899999999999999999886321 1 123
Q ss_pred CccEEeccCCcCCCCCCCCCCCCCchhhhhHhhh--------------cccC-CCccccCCCCCCCCCCCCCccccCCCc
Q 002346 304 KVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIA--------------GDMG-YPAILSDSWEGNNACDGWPFVTCSQGR 368 (933)
Q Consensus 304 ~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~l~~~~~~~~~~~~~p~~~~~l~~ 368 (933)
+|+.|+|++|++.+............... +.+. ..+. .+..-.+++.+|+..+..|..+..+++
T Consensus 427 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~-L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 505 (844)
T 3j0a_A 427 HLQILILNQNRFSSCSGDQTPSENPSLEQ-LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505 (844)
T ss_dssp TCCEEEEESCCCCCCCSSSSSCSCTTCCB-CEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred ccceeeCCCCcccccccccccccCCcccc-ccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence 45566666666654332211100000000 0000 0111 122334455666666667777899999
Q ss_pred eeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccCC
Q 002346 369 IITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKVP 432 (933)
Q Consensus 369 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p 432 (933)
|+.|+|++|+|++..|..+. ++|+.|+|++|+|++.+|..|. +|+.|++++|++.+..+
T Consensus 506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE 564 (844)
T ss_dssp CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccc
Confidence 99999999999987777776 8999999999999999998764 78999999999998766
No 277
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.3e-33 Score=312.45 Aligned_cols=305 Identities=23% Similarity=0.233 Sum_probs=179.5
Q ss_pred CEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEcc
Q 002346 67 RVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLS 145 (933)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 145 (933)
+++.|+++++.++...+..+..+++|++|+|++|.|+++++ .|..+++|++|+|++|.++++++..|+++++|++|+|+
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 34444555544443222334445555555555555554444 44455555555555555555544445555555555555
Q ss_pred CCCCCCCCCCCcc-ccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCc
Q 002346 146 DNPNLAPWPFPNE-LTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGL 224 (933)
Q Consensus 146 ~N~~~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~ 224 (933)
+|++.. +|.. +.++++|++|+|++|++.+..+..|..+++|++|+|++|++++. +
T Consensus 126 ~n~l~~---l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-------------------- 181 (390)
T 3o6n_A 126 RNDLSS---LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D-------------------- 181 (390)
T ss_dssp SSCCCC---CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--------------------
T ss_pred CCccCc---CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--------------------
Confidence 554443 2222 34455555555555555544444455555555555555554421 1
Q ss_pred ccccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCC-CCCC
Q 002346 225 SGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYP-LFPS 303 (933)
Q Consensus 225 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~ 303 (933)
+..+++|+.|++++|.+++. ....+|+.|++++|+++.. |..+ .++|+.|++++|.+++... ....
T Consensus 182 ------~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~~~~~l~~l~ 248 (390)
T 3o6n_A 182 ------LSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDTAWLLNYP 248 (390)
T ss_dssp ------GGGCTTCSEEECCSSCCSEE----ECCSSCSEEECCSSCCCEE-ECCC--CSSCCEEECCSSCCCCCGGGGGCT
T ss_pred ------cccccccceeeccccccccc----CCCCcceEEECCCCeeeec-cccc--cccccEEECCCCCCcccHHHcCCC
Confidence 22366777777777776642 2335677777777777743 3322 3677777777777776421 1234
Q ss_pred CccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcC
Q 002346 304 KVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNI 383 (933)
Q Consensus 304 ~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~ 383 (933)
+|+.|+|++|.+.+. .|..+..+++|+.|+|++|++++ +
T Consensus 249 ~L~~L~Ls~n~l~~~----------------------------------------~~~~~~~l~~L~~L~L~~n~l~~-~ 287 (390)
T 3o6n_A 249 GLVEVDLSYNELEKI----------------------------------------MYHPFVKMQRLERLYISNNRLVA-L 287 (390)
T ss_dssp TCSEEECCSSCCCEE----------------------------------------ESGGGTTCSSCCEEECCSSCCCE-E
T ss_pred CccEEECCCCcCCCc----------------------------------------ChhHccccccCCEEECCCCcCcc-c
Confidence 677777777766443 35566677788888888888875 5
Q ss_pred chhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccCCCCCCCcccccCCCCCCcC
Q 002346 384 SPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKVPDFGSNVKFTVSPGNPFIG 450 (933)
Q Consensus 384 p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~n~~~~ 450 (933)
|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++.........++...+.+|||.|
T Consensus 288 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 288 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEH
T ss_pred CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccc
Confidence 666777888888888888887 667777778888888888888877654444555555667788776
No 278
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1e-32 Score=328.50 Aligned_cols=307 Identities=22% Similarity=0.212 Sum_probs=196.0
Q ss_pred CEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEcc
Q 002346 67 RVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLS 145 (933)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 145 (933)
.++.|+++++.+....+..+..+++|++|+|++|.|++++| .|..+++|++|+|++|.|+++++..|+++++|++|+|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 34556666666654444445566666666666666666555 56666666666666666666666666666666666666
Q ss_pred CCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcc
Q 002346 146 DNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLS 225 (933)
Q Consensus 146 ~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~ 225 (933)
+|.+.. ..+..|.++++|++|+|++|.+.+..|..|+.+++|++|+|++|++++. +
T Consensus 132 ~n~l~~--l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--------------------- 187 (597)
T 3oja_B 132 RNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--------------------- 187 (597)
T ss_dssp SSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C---------------------
T ss_pred CCCCCC--CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C---------------------
Confidence 666655 2222345666666666666666666666666666666666666666532 2
Q ss_pred cccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCC-CCCCC
Q 002346 226 GTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYP-LFPSK 304 (933)
Q Consensus 226 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~ 304 (933)
+..+++|+.|++++|.+++. ....+|+.|++++|.++.. |..+ .++|+.|+|++|.+++... ....+
T Consensus 188 -----~~~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~ 255 (597)
T 3oja_B 188 -----LSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDTAWLLNYPG 255 (597)
T ss_dssp -----GGGCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCCGGGGGCTT
T ss_pred -----hhhhhhhhhhhcccCccccc----cCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCChhhccCCC
Confidence 12256777777777776642 3345677777777777633 3222 2567777777777776421 12356
Q ss_pred ccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCc
Q 002346 305 VQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNIS 384 (933)
Q Consensus 305 l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 384 (933)
|+.|+|++|.+.+. .|..+..+++|+.|+|++|++++ +|
T Consensus 256 L~~L~Ls~N~l~~~----------------------------------------~~~~~~~l~~L~~L~Ls~N~l~~-l~ 294 (597)
T 3oja_B 256 LVEVDLSYNELEKI----------------------------------------MYHPFVKMQRLERLYISNNRLVA-LN 294 (597)
T ss_dssp CSEEECCSSCCCEE----------------------------------------ESGGGTTCSSCCEEECTTSCCCE-EE
T ss_pred CCEEECCCCccCCC----------------------------------------CHHHhcCccCCCEEECCCCCCCC-CC
Confidence 77777777776543 35566677788888888888876 56
Q ss_pred hhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccCCCCCCCcccccCCCCCCcCC
Q 002346 385 PAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKVPDFGSNVKFTVSPGNPFIGT 451 (933)
Q Consensus 385 ~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~n~~~~~ 451 (933)
..++.+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+|++..+.....++...+.+|||.|.
T Consensus 295 ~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 295 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred cccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCCh
Confidence 66777788888888888887 6777777788888888888888776555445555556677777763
No 279
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2e-33 Score=308.17 Aligned_cols=267 Identities=17% Similarity=0.253 Sum_probs=149.6
Q ss_pred CccchHHHHHHHHHhcCCCCCC----CC--CCCCCCCccccceEeCC---------CCCEEEEEecCCCCccccCccccC
Q 002346 24 SLGDDGSVMLKLAQSLQNLPSD----WS--STSSTGYCEWTGINCDN---------SNRVTTISLAKSGLSGTLSPEISS 88 (933)
Q Consensus 24 ~~~~d~~~l~~~~~~~~~~~~~----w~--~~~~~~~C~w~gv~c~~---------~~~v~~L~l~~~~l~~~~~~~~~~ 88 (933)
+..+|+.||++||+++...+.. |. .....++|.|.|+.|.. ..+|+.|+|++|+++ .+|+.++.
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~ 102 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR 102 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence 4568999999999999665544 42 12366889999999952 234555555555555 44444555
Q ss_pred CcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCee
Q 002346 89 LTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTL 168 (933)
Q Consensus 89 l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L 168 (933)
+++|++|+|++|.|+.++..+..+++|++|+|++|.++.+ |..+.++++|++|
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l---------------------------p~~l~~l~~L~~L 155 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL---------------------------PASIASLNRLREL 155 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCC---------------------------CGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccC---------------------------cHHHhcCcCCCEE
Confidence 5555555555555542222344444444444444444433 3333333333333
Q ss_pred eccCcccCCCCChhh---------cCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcE
Q 002346 169 YMDNANIFGLIPDFF---------DSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQ 239 (933)
Q Consensus 169 ~L~~n~l~~~~p~~~---------~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~ 239 (933)
+|++|++.+.+|..+ ..+++|++|+|++|+++ .+|..
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~--------------------------------- 201 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS--------------------------------- 201 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG---------------------------------
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh---------------------------------
Confidence 333333333333332 23444444444444444 44433
Q ss_pred EEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCC
Q 002346 240 VWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNS 319 (933)
Q Consensus 240 L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~ 319 (933)
+..+++|+.|+|++|+++ .+|..+..+++|++|+|++|.+.+.+|
T Consensus 202 --------------l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p-------------------- 246 (328)
T 4fcg_A 202 --------------IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP-------------------- 246 (328)
T ss_dssp --------------GGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCC--------------------
T ss_pred --------------hcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhH--------------------
Confidence 444444555555555554 234445555555555555555443322
Q ss_pred CCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecc
Q 002346 320 SDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQ 399 (933)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~ 399 (933)
..+..+++|+.|+|++|++.+.+|..++++++|+.|+|+
T Consensus 247 -----------------------------------------~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 247 -----------------------------------------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp -----------------------------------------CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred -----------------------------------------HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 222333455555555555566677777888888888888
Q ss_pred cCcccCCCCcccCCCCCcCEEeccCCcCc
Q 002346 400 QNNLTGPIPDGLTKLASLQNLDVSNNNLS 428 (933)
Q Consensus 400 ~N~l~g~~p~~~~~l~~L~~l~ls~N~l~ 428 (933)
+|++.+.+|..+.+|++|+.+++..|.+.
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88888888888888888888888876554
No 280
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.6e-32 Score=308.84 Aligned_cols=303 Identities=19% Similarity=0.187 Sum_probs=251.3
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEcc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLS 145 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 145 (933)
.+++.|++++|++++. | .++.+++|++|+|++|+|+++ | +..+++|++|+|++|+|++++ ++++++|++|+|+
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD 114 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECC
Confidence 5789999999999974 5 799999999999999999986 3 889999999999999999985 8899999999999
Q ss_pred CCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccc-cccchhhcccccCCc
Q 002346 146 DNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAK-SDIQNLWMNDQQLGL 224 (933)
Q Consensus 146 ~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~l~~l~l~~n~~~~ 224 (933)
+|++.+ +| ++.+++|++|++++|++++. + ++.+++|++|++++|+..+.++ +.. ..|++|++++|.+..
T Consensus 115 ~N~l~~---l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 115 TNKLTK---LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp SSCCSC---CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCCC
T ss_pred CCcCCe---ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccce
Confidence 999988 44 89999999999999999986 3 8899999999999997766663 333 678889999988765
Q ss_pred ccccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCCCCC
Q 002346 225 SGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSK 304 (933)
Q Consensus 225 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 304 (933)
. + +..+++|+.|++++|++++. .+..+++|+.|+|++|++++ +| +..+++|+.|++++|++++..+..+..
T Consensus 185 l---~-l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~ 255 (457)
T 3bz5_A 185 L---D-VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSK 255 (457)
T ss_dssp C---C-CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred e---c-cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence 3 2 77788999999999999886 48888999999999999996 56 888899999999999999887777788
Q ss_pred ccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCc
Q 002346 305 VQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNIS 384 (933)
Q Consensus 305 l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 384 (933)
++.|+++.|++... ++.+|...+.+| .+.+++|+.|+|++|.+.|.+|
T Consensus 256 L~~L~l~~n~L~~L------------------------------~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 256 LTTLHCIQTDLLEI------------------------------DLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CCEEECTTCCCSCC------------------------------CCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred CCEEeccCCCCCEE------------------------------ECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 88888888877543 334555556665 3567788888888888777776
Q ss_pred hh--------hcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcc
Q 002346 385 PA--------YANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSG 429 (933)
Q Consensus 385 ~~--------~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g 429 (933)
.. +.++++|+.|+|++|+|++. + +..+++|+.|++++|+|++
T Consensus 304 ~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 304 CQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred cCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 42 45567788888888888873 3 7888888888888888887
No 281
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-32 Score=324.19 Aligned_cols=358 Identities=19% Similarity=0.212 Sum_probs=271.8
Q ss_pred eEeCCCCCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCC
Q 002346 60 INCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTN 138 (933)
Q Consensus 60 v~c~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 138 (933)
..|...+ + .++++++++ .+|..+. ++|++|+|++|.|++.+| .|.++++|++|+|++|+++++++..|.++++
T Consensus 2 ~~C~~~~-~--c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 75 (549)
T 2z81_A 2 LSCDASG-V--CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75 (549)
T ss_dssp CEECTTS-E--EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ccCCCCc-e--EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccccc
Confidence 3576543 3 789999998 6777665 799999999999999887 7999999999999999999999999999999
Q ss_pred CCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCC-CChhhcCCCCCCEEEccCCcCCCCCC-ccccc-cccchh
Q 002346 139 LQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGL-IPDFFDSFSNLQNLRLSYNNFTGSLP-ASFAK-SDIQNL 215 (933)
Q Consensus 139 L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~-~~l~~l 215 (933)
|++|+|++|++.+ ..|..++++++|++|+|++|++.+. .|..|+.+++|++|+|++|++.+.+| ..+.. .+|++|
T Consensus 76 L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 153 (549)
T 2z81_A 76 LEHLDLSDNHLSS--LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153 (549)
T ss_dssp CCEEECTTSCCCS--CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCEEECCCCccCc--cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee
Confidence 9999999999998 4455699999999999999999874 57889999999999999999655665 45655 679999
Q ss_pred hcccccCCcccccc-----------------------cccCCccCcEEEecCCccCCCC----CCCCC------------
Q 002346 216 WMNDQQLGLSGTLD-----------------------VLSGMTQLRQVWLHKNQFTGPI----PDLSK------------ 256 (933)
Q Consensus 216 ~l~~n~~~~~~~~~-----------------------~l~~l~~L~~L~L~~N~l~~~~----~~~~~------------ 256 (933)
++.+|.+....... .+..+++|+.|++++|++++.. +....
T Consensus 154 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred eccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence 99999876422110 1134778999999999888742 00011
Q ss_pred ---------------------------------------------------------------------------CCCCC
Q 002346 257 ---------------------------------------------------------------------------CESLF 261 (933)
Q Consensus 257 ---------------------------------------------------------------------------~~~L~ 261 (933)
..+|+
T Consensus 234 ~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~ 313 (549)
T 2z81_A 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313 (549)
T ss_dssp EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCC
T ss_pred ccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccce
Confidence 13456
Q ss_pred EEEccCCcccccCcccc-cCCCCCCEEEccCccCccCCC------CCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhH
Q 002346 262 DLSLRDNQLTGVVPASV-ISLPALLNISLQNNKLQGPYP------LFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLL 334 (933)
Q Consensus 262 ~L~L~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p------~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 334 (933)
.|++++|+++ .+|..+ ..+++|+.|+|++|++++.+| ....+|+.|+|++|++.+...
T Consensus 314 ~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------- 378 (549)
T 2z81_A 314 RITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK-------------- 378 (549)
T ss_dssp EEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH--------------
T ss_pred EEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc--------------
Confidence 6666666665 566665 479999999999999998653 235689999999999965321
Q ss_pred hhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCC
Q 002346 335 QIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKL 414 (933)
Q Consensus 335 ~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l 414 (933)
....+.....++.+...+|.+..+|..+..+++|+.|+|++|++++ +|..+. ++|++|+|++|+|++.+ ..+
T Consensus 379 -~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~--~~L~~L~Ls~N~l~~~~----~~l 450 (549)
T 2z81_A 379 -TGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLDSFS----LFL 450 (549)
T ss_dssp -HHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC-CCTTSC--TTCSEEECCSSCCSCCC----CCC
T ss_pred -chhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc-ccchhc--CCceEEECCCCChhhhc----ccC
Confidence 0000112223333333444566899999999999999999999984 454442 68999999999999753 578
Q ss_pred CCcCEEeccCCcCcccCCCCC--CCcccccCCCCCCc
Q 002346 415 ASLQNLDVSNNNLSGKVPDFG--SNVKFTVSPGNPFI 449 (933)
Q Consensus 415 ~~L~~l~ls~N~l~g~~p~~~--~~~~~~~~~~n~~~ 449 (933)
++|++|+|++|+|+ .+|... ..++...+.+|.+.
T Consensus 451 ~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 451 PRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp TTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCC
T ss_pred ChhcEEECCCCccC-cCCCcccCccCCEEecCCCccC
Confidence 99999999999999 566543 23333445566654
No 282
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-32 Score=325.71 Aligned_cols=286 Identities=19% Similarity=0.269 Sum_probs=218.3
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSL 144 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 144 (933)
..++.|+|++|.|++..+..|+.+++|++|+|++|.|++.+| .|+++++|++|+|++|.|+.+++..|+++++|++|+|
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 478999999999998888899999999999999999999988 6899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCc
Q 002346 145 SDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGL 224 (933)
Q Consensus 145 s~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~ 224 (933)
++|.+.+ ..|..+.++++|++|+|++|.+++.. ++.+++|+.|++++|.+++. +. ...|+.|++++|.+..
T Consensus 155 s~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-~~---~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 155 SNNNLER--IEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL-AI---PIAVEELDASHNSINV 225 (597)
T ss_dssp CSSCCCB--CCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE-EC---CTTCSEEECCSSCCCE
T ss_pred eCCcCCC--CChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc-cC---CchhheeeccCCcccc
Confidence 9999988 56778999999999999999998873 56688999999999999842 11 0234444555444432
Q ss_pred ccccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCCCCC
Q 002346 225 SGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSK 304 (933)
Q Consensus 225 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 304 (933)
.... ..++|+.|+|++|.+++. +.+..+++|+.|+|++|.+++.+|..|..+++|+.|+|++|.+++
T Consensus 226 ~~~~----~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------- 292 (597)
T 3oja_B 226 VRGP----VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-------- 292 (597)
T ss_dssp EECS----CCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE--------
T ss_pred cccc----cCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC--------
Confidence 2111 123455555555555542 334445555555555555554445555555555555555554443
Q ss_pred ccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCc
Q 002346 305 VQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNIS 384 (933)
Q Consensus 305 l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 384 (933)
+|..+..+++|+.|+|++|.++ .+|
T Consensus 293 ------------------------------------------------------l~~~~~~l~~L~~L~Ls~N~l~-~i~ 317 (597)
T 3oja_B 293 ------------------------------------------------------LNLYGQPIPTLKVLDLSHNHLL-HVE 317 (597)
T ss_dssp ------------------------------------------------------EECSSSCCTTCCEEECCSSCCC-CCG
T ss_pred ------------------------------------------------------CCcccccCCCCcEEECCCCCCC-ccC
Confidence 1223345678999999999999 588
Q ss_pred hhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccC
Q 002346 385 PAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKV 431 (933)
Q Consensus 385 ~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~ 431 (933)
..++.+++|+.|+|++|+|++. | +..+++|+.|+|++|++++..
T Consensus 318 ~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 318 RNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp GGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred cccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 8899999999999999999854 3 778899999999999998764
No 283
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=321.91 Aligned_cols=337 Identities=17% Similarity=0.213 Sum_probs=222.2
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCCCccCcCcCceeccccccccCCC-CCcccCCCCCCEEEc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVP-TGCFDGLTNLQVLSL 144 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L 144 (933)
.+++.|+|++|.+++..|..|+.+++|++|+|++|+|+++++. .+++|++|+|++|.+++++ +..|+++++|++|+|
T Consensus 45 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L 122 (520)
T 2z7x_B 45 SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122 (520)
T ss_dssp TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEE
T ss_pred ccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEe
Confidence 5799999999999998899999999999999999999965445 8999999999999999864 467999999999999
Q ss_pred cCCCCCCCCCCCccccCCccC--CeeeccCccc--CCCCChhhcCCC---------------------------------
Q 002346 145 SDNPNLAPWPFPNELTKSTSL--TTLYMDNANI--FGLIPDFFDSFS--------------------------------- 187 (933)
Q Consensus 145 s~N~~~~~~~~p~~~~~l~~L--~~L~L~~n~l--~~~~p~~~~~l~--------------------------------- 187 (933)
++|++.. ..+..+++| +.|++++|.+ .+..|..+..+.
T Consensus 123 ~~n~l~~-----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l 197 (520)
T 2z7x_B 123 STTHLEK-----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197 (520)
T ss_dssp EESSCCG-----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCE
T ss_pred cCcccch-----hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccc
Confidence 9999876 356677777 8888888888 666676665533
Q ss_pred --------------------------------------------------CCCEEEccCCcCCCCCCccc-----cc-cc
Q 002346 188 --------------------------------------------------NLQNLRLSYNNFTGSLPASF-----AK-SD 211 (933)
Q Consensus 188 --------------------------------------------------~L~~L~L~~N~l~~~~p~~~-----~~-~~ 211 (933)
+|++|+|++|+++|.+|..+ .. ..
T Consensus 198 ~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~ 277 (520)
T 2z7x_B 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277 (520)
T ss_dssp EECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCE
T ss_pred cccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCce
Confidence 67777777777777777766 22 34
Q ss_pred cchhhcccccCCcccccccccCC---ccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEE
Q 002346 212 IQNLWMNDQQLGLSGTLDVLSGM---TQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNIS 288 (933)
Q Consensus 212 l~~l~l~~n~~~~~~~~~~l~~l---~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 288 (933)
|+.+++..|.+... ...+..+ .+|+.|++++|.+.... ....+++|++|+|++|++++.+|..+..+++|++|+
T Consensus 278 L~~l~l~~n~~~~p--~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 354 (520)
T 2z7x_B 278 LSIHQVVSDVFGFP--QSYIYEIFSNMNIKNFTVSGTRMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354 (520)
T ss_dssp EEEEEEEECCCCSC--THHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEE
T ss_pred eEeccccccceecc--hhhhhcccccCceeEEEcCCCcccccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEE
Confidence 44455555544111 0011111 23444444444433211 113444455555555555544444455555555555
Q ss_pred ccCccCcc--CCC---CCCCCccEEeccCCcCCC-CCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCcc
Q 002346 289 LQNNKLQG--PYP---LFPSKVQKVSLDHNNFCK-NSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFV 362 (933)
Q Consensus 289 Ls~N~l~~--~~p---~~~~~l~~L~l~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~ 362 (933)
|++|++++ .+| ....+|+.|+|++|.+.+ .+...+. ..+..-...+.+|...+.+|..
T Consensus 355 L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~----------------~l~~L~~L~Ls~N~l~~~~~~~ 418 (520)
T 2z7x_B 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS----------------WTKSLLSLNMSSNILTDTIFRC 418 (520)
T ss_dssp CCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC----------------CCTTCCEEECCSSCCCGGGGGS
T ss_pred ccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc----------------cCccCCEEECcCCCCCcchhhh
Confidence 55555543 111 123344455555554443 1111000 0001111122233333333433
Q ss_pred ccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcc-cCCCCCcCEEeccCCcCcccCC
Q 002346 363 TCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDG-LTKLASLQNLDVSNNNLSGKVP 432 (933)
Q Consensus 363 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~~~l~~L~~l~ls~N~l~g~~p 432 (933)
+. ++|+.|+|++|+++ .+|..+..+++|+.|+|++|+|+ .+|.. |..+++|+.|++++|++++..+
T Consensus 419 l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 419 LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 33 68999999999999 79998889999999999999999 67765 9999999999999999998765
No 284
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.6e-32 Score=305.90 Aligned_cols=285 Identities=20% Similarity=0.285 Sum_probs=218.5
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSL 144 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 144 (933)
.+++.|+|++|++++..+..|..+++|++|+|++|.+++.+| .|.++++|++|+|++|.++.++...|.++++|++|+|
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 479999999999998888899999999999999999999888 6899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCc
Q 002346 145 SDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGL 224 (933)
Q Consensus 145 s~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~ 224 (933)
++|++.. ..|..+..+++|++|++++|++++. .+..+++|++|++++|.+++ ++. ...+++|++.+|.+..
T Consensus 149 ~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-~~~---~~~L~~L~l~~n~l~~ 219 (390)
T 3o6n_A 149 SNNNLER--IEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-LAI---PIAVEELDASHNSINV 219 (390)
T ss_dssp CSSCCCB--CCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-EEC---CSSCSEEECCSSCCCE
T ss_pred CCCccCc--cChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-cCC---CCcceEEECCCCeeee
Confidence 9999988 5567899999999999999999886 36678999999999999984 211 0234455555554432
Q ss_pred ccccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCCCCC
Q 002346 225 SGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSK 304 (933)
Q Consensus 225 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 304 (933)
... ...++|+.|+|++|++++. +.+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++.
T Consensus 220 ~~~----~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------- 287 (390)
T 3o6n_A 220 VRG----PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL------- 287 (390)
T ss_dssp EEC----CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-------
T ss_pred ccc----cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-------
Confidence 211 1134555555555555543 3444555555555555555555555555555555555555554431
Q ss_pred ccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCc
Q 002346 305 VQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNIS 384 (933)
Q Consensus 305 l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 384 (933)
|.....+++|+.|+|++|+++ .+|
T Consensus 288 -------------------------------------------------------~~~~~~l~~L~~L~L~~n~l~-~~~ 311 (390)
T 3o6n_A 288 -------------------------------------------------------NLYGQPIPTLKVLDLSHNHLL-HVE 311 (390)
T ss_dssp -------------------------------------------------------ECSSSCCTTCCEEECCSSCCC-CCG
T ss_pred -------------------------------------------------------CcccCCCCCCCEEECCCCcce-ecC
Confidence 223345678999999999998 578
Q ss_pred hhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCccc
Q 002346 385 PAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGK 430 (933)
Q Consensus 385 ~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~ 430 (933)
..++.+++|+.|+|++|+++. +| +..+++|+.|++++|++++.
T Consensus 312 ~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp GGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred ccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccch
Confidence 889999999999999999984 44 77899999999999999875
No 285
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.98 E-value=7.7e-32 Score=308.55 Aligned_cols=332 Identities=18% Similarity=0.207 Sum_probs=200.8
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcC-------------ceeccccccccCCCCC
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSL-------------QDIYLDNNNFTSVPTG 131 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L-------------~~L~Ls~N~l~~~~~~ 131 (933)
.+++.|++++|++ |.+|++|+++++|++|++++|.++|.+| +++.+++| ++|++++|.++++|..
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 4677888888888 6888888888888888888888887777 56665543 5666666666555431
Q ss_pred c--c--------------cCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEcc
Q 002346 132 C--F--------------DGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLS 195 (933)
Q Consensus 132 ~--~--------------~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 195 (933)
. + ..+++|++|++++|++.+ +|.. .++|++|++++|++++ +| .|+.+++|++|+++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~---l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA---LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC---CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred cCCCCEEEccCCcCCccccccCCCcEEECCCCccCc---ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence 0 0 012445555555554444 2211 1689999999999987 56 59999999999999
Q ss_pred CCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCc
Q 002346 196 YNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVP 275 (933)
Q Consensus 196 ~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p 275 (933)
+|++++ +|..+ ..|++|++.+|.+.. .+.+.++++|+.|++++|++++.+... .+|+.|++++|+++ .+|
T Consensus 162 ~N~l~~-lp~~~--~~L~~L~L~~n~l~~---l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp 231 (454)
T 1jl5_A 162 NNSLKK-LPDLP--PSLEFIAAGNNQLEE---LPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE-ELP 231 (454)
T ss_dssp SSCCSC-CCCCC--TTCCEEECCSSCCSS---CCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCS-SCC
T ss_pred CCcCcc-cCCCc--ccccEEECcCCcCCc---CccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCC-ccc
Confidence 999984 77655 378999999998775 235888999999999999998744322 58889999999888 677
Q ss_pred ccccCCCCCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhh--HhhhcccCCCccccCCCCCC
Q 002346 276 ASVISLPALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTL--LQIAGDMGYPAILSDSWEGN 353 (933)
Q Consensus 276 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~ 353 (933)
. +..+++|++|++++|++++ +|..+.+++.|++++|.+.+.+... ... +...+ -.+......+..++.+...+
T Consensus 232 ~-~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~-~~L--~~L~ls~N~l~~l~~~~~~L~~L~l~~ 306 (454)
T 1jl5_A 232 E-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELP-QSL--TFLDVSENIFSGLSELPPNLYYLNASS 306 (454)
T ss_dssp C-CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCC-TTC--CEEECCSSCCSEESCCCTTCCEEECCS
T ss_pred c-cCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCccc-CcC--CEEECcCCccCcccCcCCcCCEEECcC
Confidence 4 8888899999999998886 4556678888888888887744321 000 00000 00000001112222222222
Q ss_pred CCCCCCCccccCC-CceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcc--c
Q 002346 354 NACDGWPFVTCSQ-GRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSG--K 430 (933)
Q Consensus 354 ~~~~~~p~~~~~l-~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g--~ 430 (933)
+.+..++ .+ ++|+.|+|++|++++ +|.. +++|+.|+|++|+++ .+|. .+++|++|++++|++++ .
T Consensus 307 N~l~~i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ 374 (454)
T 1jl5_A 307 NEIRSLC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPD 374 (454)
T ss_dssp SCCSEEC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCC
T ss_pred CcCCccc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCC
Confidence 3332222 22 467777777777775 5543 467777777777777 4665 36677777777777777 4
Q ss_pred CCC
Q 002346 431 VPD 433 (933)
Q Consensus 431 ~p~ 433 (933)
+|.
T Consensus 375 ip~ 377 (454)
T 1jl5_A 375 IPE 377 (454)
T ss_dssp CCT
T ss_pred ChH
Confidence 553
No 286
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=4.6e-31 Score=292.86 Aligned_cols=301 Identities=22% Similarity=0.340 Sum_probs=237.4
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEcc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLS 145 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 145 (933)
..++.|+++++++.. ++ .+..+++|++|++++|.+++..+ +..+++|++|+|++|.++.++ .|.++++|++|+|+
T Consensus 44 ~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLN 118 (347)
T ss_dssp TTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECT
T ss_pred ccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECc
Confidence 478999999999974 44 48999999999999999998766 999999999999999999975 49999999999999
Q ss_pred CCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccc-cccchhhcccccCCc
Q 002346 146 DNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAK-SDIQNLWMNDQQLGL 224 (933)
Q Consensus 146 ~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~l~~l~l~~n~~~~ 224 (933)
+|.+.. ++. +..+++|+.|++++|.....++. +..+++|++|++++|.+++ ++. +.. ..|++|++++|.+..
T Consensus 119 ~n~i~~---~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 119 EDNISD---ISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp TSCCCC---CGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSCCCC
T ss_pred CCcccC---chh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCcccc
Confidence 999987 444 89999999999999977666554 8999999999999999984 433 333 567777887777654
Q ss_pred ccccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCC-CCCC
Q 002346 225 SGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYP-LFPS 303 (933)
Q Consensus 225 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~ 303 (933)
... +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|.+++... ..+.
T Consensus 192 ~~~---~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~ 265 (347)
T 4fmz_A 192 ISP---LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLT 265 (347)
T ss_dssp CGG---GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCT
T ss_pred ccc---ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCChhHhcCC
Confidence 332 6667788888888888876655 7777888888888888874433 7778888888888888776421 1245
Q ss_pred CccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcC
Q 002346 304 KVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNI 383 (933)
Q Consensus 304 ~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~ 383 (933)
+|+.|++++|.+.+. ..+..+++|+.|+|++|.+++..
T Consensus 266 ~L~~L~l~~n~l~~~------------------------------------------~~~~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI------------------------------------------SVLNNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp TCCEEECCSSCCCCC------------------------------------------GGGGGCTTCSEEECCSSCCCGGG
T ss_pred CcCEEEccCCccCCC------------------------------------------hhhcCCCCCCEEECcCCcCCCcC
Confidence 777788877776432 13556678888889888888888
Q ss_pred chhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCc
Q 002346 384 SPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLS 428 (933)
Q Consensus 384 p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~ 428 (933)
|..|+.+++|+.|+|++|++++..| +..+++|+.|++++|+|+
T Consensus 304 ~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 304 MEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888889999999888886656 778888888888888875
No 287
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.8e-31 Score=292.44 Aligned_cols=282 Identities=19% Similarity=0.268 Sum_probs=203.8
Q ss_pred EEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCC
Q 002346 69 TTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDN 147 (933)
Q Consensus 69 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 147 (933)
+.+++++++++ .+|..+. ++|++|+|++|.|++.+| .|.++++|++|+|++|+++++++..|.++++|++|+|++|
T Consensus 36 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 36 RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 34455556666 5666553 688999999999988877 7888999999999999999888888999999999999999
Q ss_pred CCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCC--CCCccccccccchhhcccccCCcc
Q 002346 148 PNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTG--SLPASFAKSDIQNLWMNDQQLGLS 225 (933)
Q Consensus 148 ~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~~l~~l~l~~n~~~~~ 225 (933)
++.. +|..+. ++|++|++++|++.+..+..|..+++|++|+|++|+++. ..|..+..
T Consensus 113 ~l~~---l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~---------------- 171 (332)
T 2ft3_A 113 HLVE---IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG---------------- 171 (332)
T ss_dssp CCCS---CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS----------------
T ss_pred cCCc---cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC----------------
Confidence 8886 666655 789999999999988888888999999999999999863 45555443
Q ss_pred cccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCC---C
Q 002346 226 GTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLF---P 302 (933)
Q Consensus 226 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---~ 302 (933)
+ +|+.|++++|++++.+..+. ++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+.. .
T Consensus 172 --------l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 172 --------L-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp --------C-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred --------C-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 4 66666677776666444433 56667777777776666666666777777777777766655422 2
Q ss_pred CCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCc
Q 002346 303 SKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGN 382 (933)
Q Consensus 303 ~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~ 382 (933)
.+|+.|+|++|++. .+|..+..+++|+.|+|++|++++.
T Consensus 241 ~~L~~L~L~~N~l~-----------------------------------------~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 241 PTLRELHLDNNKLS-----------------------------------------RVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp TTCCEEECCSSCCC-----------------------------------------BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred CCCCEEECCCCcCe-----------------------------------------ecChhhhcCccCCEEECCCCCCCcc
Confidence 35555555555552 2345566677788888888888876
Q ss_pred CchhhcCc------ccCCeEecccCccc--CCCCcccCCCCCcCEEeccCCc
Q 002346 383 ISPAYANL------TSLKNLYLQQNNLT--GPIPDGLTKLASLQNLDVSNNN 426 (933)
Q Consensus 383 ~p~~~~~l------~~L~~L~L~~N~l~--g~~p~~~~~l~~L~~l~ls~N~ 426 (933)
.+..|..+ ..|+.|+|++|.+. +..|..|..+++|+.+++++|+
T Consensus 280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 66666553 56788888888876 5677778888888888888774
No 288
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=6.4e-31 Score=303.64 Aligned_cols=339 Identities=23% Similarity=0.336 Sum_probs=217.4
Q ss_pred CEEEEEecCCCCccccCccccCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccC
Q 002346 67 RVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSD 146 (933)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 146 (933)
+++.|++.++++.. +| .+..+++|++|+|++|.+++.++ +.++++|++|+|++|.++++++ +.++++|++|+|++
T Consensus 47 ~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 47 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 121 (466)
T ss_dssp TCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred cccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCC
Confidence 56777777777763 44 36777777777777777777665 7777777777777777777765 77777777777777
Q ss_pred CCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccc-cccchhhcccccCCcc
Q 002346 147 NPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAK-SDIQNLWMNDQQLGLS 225 (933)
Q Consensus 147 N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~l~~l~l~~n~~~~~ 225 (933)
|.+.. ++. +.++++|++|++++|.+.+. + .++.+++|++|+++ |.+.+. +. +.. ..|++|++++|.+...
T Consensus 122 n~l~~---~~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-~~-~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 122 NQITD---IDP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-KP-LANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp SCCCC---CGG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-GG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCC---ChH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc-hh-hccCCCCCEEECcCCcCCCC
Confidence 77766 332 77777777777777777664 2 36667777777765 444422 22 322 4566666666665432
Q ss_pred cccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCC-CCCC
Q 002346 226 GTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPL-FPSK 304 (933)
Q Consensus 226 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~ 304 (933)
+.+..+++|+.|++++|++++..+ +..+++|+.|++++|++++. ..+..+++|+.|++++|.+++..|. ...+
T Consensus 193 ---~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~ 266 (466)
T 1o6v_A 193 ---SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTK 266 (466)
T ss_dssp ---GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred ---hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhcCCC
Confidence 335566677777777777766554 55666777777777776642 3466667777777777777665441 2346
Q ss_pred ccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCc
Q 002346 305 VQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNIS 384 (933)
Q Consensus 305 l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 384 (933)
|+.|++++|.+.+..+ +.....++.+...++.+..++. +..+++|+.|+|++|++++..|
T Consensus 267 L~~L~l~~n~l~~~~~-------------------~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 267 LTELKLGANQISNISP-------------------LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp CSEEECCSSCCCCCGG-------------------GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG
T ss_pred CCEEECCCCccCcccc-------------------ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh
Confidence 6777777776654321 0111122222222233333433 6677788888888888887665
Q ss_pred hhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccCCCCCCC--cccccCCCCCCcC
Q 002346 385 PAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKVPDFGSN--VKFTVSPGNPFIG 450 (933)
Q Consensus 385 ~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p~~~~~--~~~~~~~~n~~~~ 450 (933)
++.+++|+.|+|++|++++. ..+..+++|+.|++++|++++.+| +... ++...+.+|+|.+
T Consensus 327 --~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 327 --VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp --GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred --hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 67788888888888888754 467778888888888888887777 3322 2223445666644
No 289
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.4e-30 Score=286.67 Aligned_cols=282 Identities=20% Similarity=0.270 Sum_probs=226.0
Q ss_pred EEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCC
Q 002346 70 TISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNP 148 (933)
Q Consensus 70 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 148 (933)
.+++++++++ .+|..+. +.|++|+|++|.|++.++ .|.++++|++|+|++|+++++.+..|.++++|++|+|++|+
T Consensus 35 ~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 35 VVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp EEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 4444555665 4565554 689999999999999888 79999999999999999999988889999999999999999
Q ss_pred CCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCC--CCCccccccccchhhcccccCCccc
Q 002346 149 NLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTG--SLPASFAKSDIQNLWMNDQQLGLSG 226 (933)
Q Consensus 149 ~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~~l~~l~l~~n~~~~~~ 226 (933)
+.. +|..+. ++|++|++++|++.+..+..|..+++|++|+|++|+++. ..+..+
T Consensus 112 l~~---l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------- 167 (330)
T 1xku_A 112 LKE---LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF------------------- 167 (330)
T ss_dssp CSB---CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG-------------------
T ss_pred CCc---cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc-------------------
Confidence 886 666655 799999999999999988899999999999999999963 444444
Q ss_pred ccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCC---CC
Q 002346 227 TLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLF---PS 303 (933)
Q Consensus 227 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---~~ 303 (933)
.++++|+.|++++|+++..+..+. ++|+.|+|++|++++..|..+..+++|+.|+|++|.+++..+.. ..
T Consensus 168 -----~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 168 -----QGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp -----GGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred -----cCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 348999999999999997665554 88999999999999888899999999999999999999876643 34
Q ss_pred CccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcC
Q 002346 304 KVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNI 383 (933)
Q Consensus 304 ~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~ 383 (933)
+|+.|+|++|.+. .+|..+..+++|+.|+|++|++++..
T Consensus 241 ~L~~L~L~~N~l~-----------------------------------------~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 241 HLRELHLNNNKLV-----------------------------------------KVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp TCCEEECCSSCCS-----------------------------------------SCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCCEEECCCCcCc-----------------------------------------cCChhhccCCCcCEEECCCCcCCccC
Confidence 6778888887764 24555667778888888888888766
Q ss_pred chhhcCc------ccCCeEecccCcccC--CCCcccCCCCCcCEEeccCCc
Q 002346 384 SPAYANL------TSLKNLYLQQNNLTG--PIPDGLTKLASLQNLDVSNNN 426 (933)
Q Consensus 384 p~~~~~l------~~L~~L~L~~N~l~g--~~p~~~~~l~~L~~l~ls~N~ 426 (933)
+..|... +.|+.|+|++|.+.. ..|..|..+..|+.++|++|+
T Consensus 280 ~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 280 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 6666543 677888888888753 556778888888888888874
No 290
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.2e-31 Score=292.26 Aligned_cols=249 Identities=29% Similarity=0.470 Sum_probs=201.1
Q ss_pred cCceeccccccccC--CCCCcccCCCCCCEEEccC-CCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCC
Q 002346 114 SLQDIYLDNNNFTS--VPTGCFDGLTNLQVLSLSD-NPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQ 190 (933)
Q Consensus 114 ~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~-N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 190 (933)
+++.|+|++|.+++ ..+..|.++++|++|+|++ |.+.+ .+|..+.++++|++|+|++|++++.+|..|..+++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG--PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES--CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc--cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 34444444444443 2333455566666666663 55555 4677888888888888888888888899999999999
Q ss_pred EEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCC-CCCCCC-CCCEEEccCC
Q 002346 191 NLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIP-DLSKCE-SLFDLSLRDN 268 (933)
Q Consensus 191 ~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~-~L~~L~L~~N 268 (933)
+|+|++|++++.+|..+.. +++|++|+|++|++++.+| .+..++ +|+.|+|++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~------------------------l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISS------------------------LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp EEECCSSEEESCCCGGGGG------------------------CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred EEeCCCCccCCcCChHHhc------------------------CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 9999999999888887655 8899999999999987666 477887 8999999999
Q ss_pred cccccCcccccCCCCCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccC
Q 002346 269 QLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSD 348 (933)
Q Consensus 269 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 348 (933)
++++.+|..+..++ |+.|+|++|.+++.+|
T Consensus 185 ~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~------------------------------------------------- 214 (313)
T 1ogq_A 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDAS------------------------------------------------- 214 (313)
T ss_dssp EEEEECCGGGGGCC-CSEEECCSSEEEECCG-------------------------------------------------
T ss_pred eeeccCChHHhCCc-ccEEECcCCcccCcCC-------------------------------------------------
Confidence 99999999998887 9999999998886433
Q ss_pred CCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCc
Q 002346 349 SWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLS 428 (933)
Q Consensus 349 ~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~ 428 (933)
..+..+++|+.|+|++|++++.+|. +..+++|+.|+|++|+++|.+|..|..+++|+.|+|++|+|+
T Consensus 215 ------------~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 215 ------------VLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp ------------GGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred ------------HHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 3455678999999999999987777 899999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCc--ccccCCCCCCcCC
Q 002346 429 GKVPDFGSNV--KFTVSPGNPFIGT 451 (933)
Q Consensus 429 g~~p~~~~~~--~~~~~~~n~~~~~ 451 (933)
|.+|...... +...+.+||+.|.
T Consensus 282 ~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 282 GEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECCCSTTGGGSCGGGTCSSSEEES
T ss_pred ccCCCCccccccChHHhcCCCCccC
Confidence 9999875433 3345678998774
No 291
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.6e-31 Score=296.96 Aligned_cols=284 Identities=21% Similarity=0.290 Sum_probs=226.8
Q ss_pred CCCCccccceEeCCCCCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCC
Q 002346 51 STGYCEWTGINCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVP 129 (933)
Q Consensus 51 ~~~~C~w~gv~c~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~ 129 (933)
..+.|.|.|+ | ++++++++ .+|..+. ++|++|++++|+|+++++ .|.++++|++|+|++|++++++
T Consensus 26 ~~~~C~~~~~-c---------~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (353)
T 2z80_A 26 ASLSCDRNGI-C---------KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92 (353)
T ss_dssp -CCEECTTSE-E---------ECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred cCCCCCCCeE-e---------eCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC
Confidence 3567999887 6 34677887 5676655 489999999999998887 7999999999999999999999
Q ss_pred CCcccCCCCCCEEEccCCCCCCCCCCCcc-ccCCccCCeeeccCcccCCCCC-hhhcCCCCCCEEEccCCc-CCCCCCcc
Q 002346 130 TGCFDGLTNLQVLSLSDNPNLAPWPFPNE-LTKSTSLTTLYMDNANIFGLIP-DFFDSFSNLQNLRLSYNN-FTGSLPAS 206 (933)
Q Consensus 130 ~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~-l~~~~p~~ 206 (933)
+..|.++++|++|+|++|++.. +|.. +.++++|++|+|++|++.+..+ ..|..+++|++|++++|+ +++..+..
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 169 (353)
T 2z80_A 93 EDSFSSLGSLEHLDLSYNYLSN---LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCCSS---CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT
T ss_pred HhhcCCCCCCCEEECCCCcCCc---CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHH
Confidence 8889999999999999999987 4544 8889999999999999987655 578889999999999984 65444444
Q ss_pred ccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCC-CCCCCCCCCEEEccCCcccccCcccccCCCCCC
Q 002346 207 FAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIP-DLSKCESLFDLSLRDNQLTGVVPASVISLPALL 285 (933)
Q Consensus 207 ~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 285 (933)
+. ++++|+.|++++|++++..| .+..+++|++|++++|+++...+..+..+++|+
T Consensus 170 ~~------------------------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 225 (353)
T 2z80_A 170 FA------------------------GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225 (353)
T ss_dssp TT------------------------TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEE
T ss_pred cc------------------------CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhccccc
Confidence 43 48889999999999988765 588889999999999998744334455688899
Q ss_pred EEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccC
Q 002346 286 NISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCS 365 (933)
Q Consensus 286 ~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~ 365 (933)
.|+|++|.+++..+...+. ...
T Consensus 226 ~L~L~~n~l~~~~~~~l~~----------------------------------------------------------~~~ 247 (353)
T 2z80_A 226 CLELRDTDLDTFHFSELST----------------------------------------------------------GET 247 (353)
T ss_dssp EEEEESCBCTTCCCC----------------------------------------------------------------C
T ss_pred EEECCCCcccccccccccc----------------------------------------------------------ccc
Confidence 9999999888654321110 111
Q ss_pred CCceeEEEccCccccC----cCchhhcCcccCCeEecccCcccCCCCcc-cCCCCCcCEEeccCCcCcccCCC
Q 002346 366 QGRIITINLANKLLAG----NISPAYANLTSLKNLYLQQNNLTGPIPDG-LTKLASLQNLDVSNNNLSGKVPD 433 (933)
Q Consensus 366 l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~~~l~~L~~l~ls~N~l~g~~p~ 433 (933)
...++.++|++|.+.+ .+|..+..+++|+.|+|++|+++ .+|.. |..+++|++|++++|++++..|.
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 2456677777777776 47889999999999999999999 66666 58999999999999999998873
No 292
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.3e-29 Score=290.35 Aligned_cols=314 Identities=18% Similarity=0.124 Sum_probs=255.1
Q ss_pred CCCccccCccccCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCC
Q 002346 76 SGLSGTLSPEISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPF 155 (933)
Q Consensus 76 ~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~ 155 (933)
.+..+..+..++++++|++|++++|.|++. |.+..+++|++|+|++|+|++++ ++.+++|++|+|++|++.+ +
T Consensus 28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~---~ 100 (457)
T 3bz5_A 28 FEMQATDTISEEQLATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTN---L 100 (457)
T ss_dssp TTCCTTSEEEHHHHTTCCEEECCSSCCCCC-TTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC---C
T ss_pred cCcCcccccChhHcCCCCEEEccCCCcccC-hhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCce---e
Confidence 344556666889999999999999999986 68999999999999999999985 8899999999999999998 3
Q ss_pred CccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccc-cccchhhcccccCCcccccccccCC
Q 002346 156 PNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAK-SDIQNLWMNDQQLGLSGTLDVLSGM 234 (933)
Q Consensus 156 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~l~~l~l~~n~~~~~~~~~~l~~l 234 (933)
+ ++++++|++|++++|++++. | ++.+++|++|++++|++++ ++ +.. ..|++|++..|...... .+..+
T Consensus 101 ~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l 169 (457)
T 3bz5_A 101 D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL---DVTPQ 169 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC---CCTTC
T ss_pred e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc---ccccC
Confidence 3 89999999999999999985 4 8999999999999999996 44 333 67999999998543222 36778
Q ss_pred ccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCCCCCccEEeccCCc
Q 002346 235 TQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSKVQKVSLDHNN 314 (933)
Q Consensus 235 ~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~ 314 (933)
++|+.|++++|++++.+ +..+++|+.|++++|++++. .+..+++|+.|++++|++++.......+|+.|++++|+
T Consensus 170 ~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 170 TQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNP 244 (457)
T ss_dssp TTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSC
T ss_pred CcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCc
Confidence 99999999999999853 88999999999999999965 48899999999999999999543345789999999999
Q ss_pred CCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCC
Q 002346 315 FCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLK 394 (933)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~ 394 (933)
|.+.+.... ..+........+|+.|++++|.+.|.+| ++++++|+
T Consensus 245 l~~~~~~~l---------------------------------~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~ 289 (457)
T 3bz5_A 245 LTELDVSTL---------------------------------SKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIK 289 (457)
T ss_dssp CSCCCCTTC---------------------------------TTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCC
T ss_pred CCCcCHHHC---------------------------------CCCCEEeccCCCCCEEECCCCccCCccc--ccccccCC
Confidence 987542211 1111112233578899999999999888 67899999
Q ss_pred eEecccCcccCCCCcc--------cCCCCCcCEEeccCCcCcccCCCCCC--CcccccCCCCCCc
Q 002346 395 NLYLQQNNLTGPIPDG--------LTKLASLQNLDVSNNNLSGKVPDFGS--NVKFTVSPGNPFI 449 (933)
Q Consensus 395 ~L~L~~N~l~g~~p~~--------~~~l~~L~~l~ls~N~l~g~~p~~~~--~~~~~~~~~n~~~ 449 (933)
.|+|++|++.|.+|.. +..+++|+.|++++|+|+|. + +.. .++.....+|.+.
T Consensus 290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~-l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D-VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C-CTTCTTCSEEECCSSCCC
T ss_pred EEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c-cccCCcCcEEECCCCCCC
Confidence 9999999988877753 55668999999999999995 3 443 3333344566553
No 293
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.1e-29 Score=281.61 Aligned_cols=303 Identities=20% Similarity=0.292 Sum_probs=251.1
Q ss_pred ccCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccC
Q 002346 86 ISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSL 165 (933)
Q Consensus 86 ~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L 165 (933)
+..+++|++|++++|.++.. +.+..+++|++|+|++|+++.+++ +..+++|++|+|++|.+.. + ..+.++++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~---~-~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD---I-SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---C-GGGTTCTTC
T ss_pred chhcccccEEEEeCCccccc-hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC---c-hHHcCCCcC
Confidence 46789999999999999864 568999999999999999999887 9999999999999999987 3 469999999
Q ss_pred CeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCC
Q 002346 166 TTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKN 245 (933)
Q Consensus 166 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N 245 (933)
++|++++|++.+..+ +..+++|++|++++|.....++..-....|++|++.+|.+..... +..+++|+.|++++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccCC
Confidence 999999999987644 889999999999999777566553333678888998888764443 677889999999999
Q ss_pred ccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCC-CCCCCccEEeccCCcCCCCCCCCCC
Q 002346 246 QFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYP-LFPSKVQKVSLDHNNFCKNSSDAGK 324 (933)
Q Consensus 246 ~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~l~~n~~~~~~~~~~~ 324 (933)
.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|.+++..+ ....+|+.|++++|.+...
T Consensus 188 ~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~------ 258 (347)
T 4fmz_A 188 QIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI------ 258 (347)
T ss_dssp CCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC------
T ss_pred ccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC------
Confidence 9887655 8888999999999999986544 7888999999999999987655 2346788999998887442
Q ss_pred CCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCccc
Q 002346 325 PCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLT 404 (933)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 404 (933)
..+..+++|+.|++++|++++. +.+..+++|+.|+|++|+++
T Consensus 259 ------------------------------------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 259 ------------------------------------NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp ------------------------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ------------------------------------hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCC
Confidence 2356678999999999999975 56899999999999999999
Q ss_pred CCCCcccCCCCCcCEEeccCCcCcccCCCCCC--CcccccCCCCCC
Q 002346 405 GPIPDGLTKLASLQNLDVSNNNLSGKVPDFGS--NVKFTVSPGNPF 448 (933)
Q Consensus 405 g~~p~~~~~l~~L~~l~ls~N~l~g~~p~~~~--~~~~~~~~~n~~ 448 (933)
+..|..+..+++|+.|++++|++++.+| +.. .++...+.+|++
T Consensus 301 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 301 NEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp GGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred CcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 9999999999999999999999999887 332 333334456654
No 294
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.5e-29 Score=304.93 Aligned_cols=350 Identities=17% Similarity=0.166 Sum_probs=258.6
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSL 144 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 144 (933)
.+++.|+|++|+|++..+.+|.++++|++|+|++|+|+++++ .|.++++|++|+|++|+|+++++..|+++++|++|+|
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence 479999999999998888899999999999999999999888 7999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCC------------------------------------
Q 002346 145 SDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSN------------------------------------ 188 (933)
Q Consensus 145 s~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~------------------------------------ 188 (933)
++|.+... .+|..+..+++|++|+|++|++.+..+..|..+.+
T Consensus 156 s~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n 234 (635)
T 4g8a_A 156 AHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 234 (635)
T ss_dssp CSSCCCCC-CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred ccCccccC-CCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcc
Confidence 99998763 46889999999999999999998776655533222
Q ss_pred --------------------------------------------------------------------------------
Q 002346 189 -------------------------------------------------------------------------------- 188 (933)
Q Consensus 189 -------------------------------------------------------------------------------- 188 (933)
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 314 (635)
T 4g8a_A 235 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLV 314 (635)
T ss_dssp CSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEE
T ss_pred cccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccc
Confidence
Q ss_pred ---------------CCEEEccCCcCCCCCCccc--------------------cccccchhhcccccCCccccc-cccc
Q 002346 189 ---------------LQNLRLSYNNFTGSLPASF--------------------AKSDIQNLWMNDQQLGLSGTL-DVLS 232 (933)
Q Consensus 189 ---------------L~~L~L~~N~l~~~~p~~~--------------------~~~~l~~l~l~~n~~~~~~~~-~~l~ 232 (933)
|+.|++.+|++.+..+..+ ..+.++.|++..|.+...+.. ..+.
T Consensus 315 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 394 (635)
T 4g8a_A 315 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 394 (635)
T ss_dssp SCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHH
T ss_pred ccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchh
Confidence 2233333333221111110 012355566666666543332 2344
Q ss_pred CCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCc-ccccCCCCCCEEEccCccCccCCCCC---CCCccEE
Q 002346 233 GMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVP-ASVISLPALLNISLQNNKLQGPYPLF---PSKVQKV 308 (933)
Q Consensus 233 ~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L 308 (933)
.+.+|+.|++..|.+....+.+..+++|+.++++.|++....+ ..+..+++++.+++++|.+.+..+.. ...++.|
T Consensus 395 ~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L 474 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 474 (635)
T ss_dssp SCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred hhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhh
Confidence 5667777777777777666667777777777777766665443 44666777777777777777665543 3466777
Q ss_pred eccCCcCCC-CCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhh
Q 002346 309 SLDHNNFCK-NSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAY 387 (933)
Q Consensus 309 ~l~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~ 387 (933)
+|++|++.. ..+..+. .....-.+++++|...+..|..+..+++|+.|+|++|+|++..|..|
T Consensus 475 ~Ls~N~~~~~~~~~~~~----------------~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~ 538 (635)
T 4g8a_A 475 KMAGNSFQENFLPDIFT----------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 538 (635)
T ss_dssp ECTTCEEGGGEECSCCT----------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGG
T ss_pred hhhhcccccccCchhhh----------------hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHH
Confidence 777776432 1111111 01112223445555555567888999999999999999999999999
Q ss_pred cCcccCCeEecccCcccCCCCcccCCC-CCcCEEeccCCcCcccCC
Q 002346 388 ANLTSLKNLYLQQNNLTGPIPDGLTKL-ASLQNLDVSNNNLSGKVP 432 (933)
Q Consensus 388 ~~l~~L~~L~L~~N~l~g~~p~~~~~l-~~L~~l~ls~N~l~g~~p 432 (933)
.++++|++|+|++|+|++..|..|..+ ++|++|+|++|+|++.-.
T Consensus 539 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 539 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred hCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999999999999999999999998 689999999999987643
No 295
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.8e-29 Score=277.98 Aligned_cols=263 Identities=21% Similarity=0.279 Sum_probs=213.6
Q ss_pred cccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeee
Q 002346 90 TQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLY 169 (933)
Q Consensus 90 ~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~ 169 (933)
.+|+.+++++|.++.++..+. ++|++|+|++|+++++++..|.++++|++|+|++|++.. ..|..+.++++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK--IHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--ECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc--cCHhHhhCcCCCCEEE
Confidence 368999999999986655553 789999999999999999899999999999999999988 5688999999999999
Q ss_pred ccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCC
Q 002346 170 MDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTG 249 (933)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~ 249 (933)
|++|++... |..+. ++|++|+|++|++++..+..| .++++|+.|++++|.++.
T Consensus 109 L~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~------------------------~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 109 ISKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVF------------------------SGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp CCSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGG------------------------SSCSSCCEEECCSCCCBG
T ss_pred CCCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHh------------------------CCCccCCEEECCCCcccc
Confidence 999999855 55444 899999999999995444444 348999999999999963
Q ss_pred --CCC-CCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCC---CCCccEEeccCCcCCCCCCCCC
Q 002346 250 --PIP-DLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLF---PSKVQKVSLDHNNFCKNSSDAG 323 (933)
Q Consensus 250 --~~~-~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~l~~n~~~~~~~~~~ 323 (933)
..+ .+..+ +|+.|++++|++++ +|..+. ++|++|+|++|.+++..+.. ..+|+.|+|++|++.+..
T Consensus 162 ~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~---- 233 (332)
T 2ft3_A 162 SGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE---- 233 (332)
T ss_dssp GGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC----
T ss_pred CCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC----
Confidence 444 46666 99999999999995 676665 79999999999999877643 346777888887775432
Q ss_pred CCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcc
Q 002346 324 KPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNL 403 (933)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l 403 (933)
|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++
T Consensus 234 ------------------------------------~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 234 ------------------------------------NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp ------------------------------------TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred ------------------------------------hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence 234566778888888888887 6777788888888888888888
Q ss_pred cCCCCcccCCC------CCcCEEeccCCcCc
Q 002346 404 TGPIPDGLTKL------ASLQNLDVSNNNLS 428 (933)
Q Consensus 404 ~g~~p~~~~~l------~~L~~l~ls~N~l~ 428 (933)
++..+..|..+ +.|+.|++++|++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CccChhHccccccccccccccceEeecCccc
Confidence 86666666553 56788888888876
No 296
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=3.8e-29 Score=288.76 Aligned_cols=321 Identities=23% Similarity=0.294 Sum_probs=259.2
Q ss_pred cCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCC
Q 002346 87 SSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLT 166 (933)
Q Consensus 87 ~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~ 166 (933)
..+++|+.|++++|.++. +|.+..+++|++|+|++|.++++++ +.++++|++|+|++|.+.. ++. +.++++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~---~~~-~~~l~~L~ 115 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD---ITP-LANLTNLT 115 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---CGG-GTTCTTCC
T ss_pred hHhccccEEecCCCCCcc-CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc---Chh-hcCCCCCC
Confidence 457899999999999986 5678899999999999999999986 9999999999999999988 444 99999999
Q ss_pred eeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCc
Q 002346 167 TLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQ 246 (933)
Q Consensus 167 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~ 246 (933)
+|+|++|++.+..+ +..+++|++|+|++|++++ ++.--....|++|.+.+ .+.. ...+.++++|+.|++++|.
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~-~~~~---~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGN-QVTD---LKPLANLTTLERLDISSNK 188 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEE-SCCC---CGGGTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCC-cccC---chhhccCCCCCEEECcCCc
Confidence 99999999988744 8999999999999999984 55422336788888864 3322 2348889999999999999
Q ss_pred cCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCC-CCCCCccEEeccCCcCCCCCCCCCCC
Q 002346 247 FTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYP-LFPSKVQKVSLDHNNFCKNSSDAGKP 325 (933)
Q Consensus 247 l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~l~~n~~~~~~~~~~~~ 325 (933)
+++. +.+..+++|+.|++++|++++..| +..+++|+.|++++|.+++... ....+|+.|++++|.+.+..+
T Consensus 189 l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~----- 260 (466)
T 1o6v_A 189 VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP----- 260 (466)
T ss_dssp CCCC-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-----
T ss_pred CCCC-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-----
Confidence 9875 458899999999999999997666 7889999999999999987422 124689999999999976532
Q ss_pred CCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccC
Q 002346 326 CDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTG 405 (933)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 405 (933)
+.....++.+...++.+..+|. +..+++|+.|+|++|++.+..| ++.+++|+.|+|++|++++
T Consensus 261 --------------~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 261 --------------LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp --------------GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred --------------hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence 1122233333334445555655 8889999999999999998655 8999999999999999998
Q ss_pred CCCcccCCCCCcCEEeccCCcCcccCCCCCC--CcccccCCCCCCc
Q 002346 406 PIPDGLTKLASLQNLDVSNNNLSGKVPDFGS--NVKFTVSPGNPFI 449 (933)
Q Consensus 406 ~~p~~~~~l~~L~~l~ls~N~l~g~~p~~~~--~~~~~~~~~n~~~ 449 (933)
..| +..+++|+.|++++|++++. +.+.. .++.....+|.+.
T Consensus 324 ~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 324 ISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC
T ss_pred chh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccC
Confidence 766 78999999999999999986 44443 2333344566653
No 297
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=2.3e-29 Score=296.48 Aligned_cols=278 Identities=26% Similarity=0.357 Sum_probs=230.6
Q ss_pred CCCCccccceEeCC-------CCCEEEEEecCCCCccccCccccCCcccceeecccccccccCCCccCcCcCceeccccc
Q 002346 51 STGYCEWTGINCDN-------SNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNN 123 (933)
Q Consensus 51 ~~~~C~w~gv~c~~-------~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N 123 (933)
..++|.|+|..|.. ...++.|++++++|+ .+|..+. ++|++|+|++|.|+.+++ .+++|++|+|++|
T Consensus 18 ~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N 91 (622)
T 3g06_A 18 AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN 91 (622)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred cCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC
Confidence 45689997754321 236899999999998 7887776 899999999999996554 5789999999999
Q ss_pred cccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCC
Q 002346 124 NFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSL 203 (933)
Q Consensus 124 ~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 203 (933)
+|++++. .+++|++|+|++|++.. +|. .+++|+.|++++|++++. |.. +++|++|+|++|+++ .+
T Consensus 92 ~l~~lp~----~l~~L~~L~Ls~N~l~~---l~~---~l~~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~N~l~-~l 156 (622)
T 3g06_A 92 QLTSLPV----LPPGLLELSIFSNPLTH---LPA---LPSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLA-SL 156 (622)
T ss_dssp CCSCCCC----CCTTCCEEEECSCCCCC---CCC---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCS-CC
T ss_pred cCCcCCC----CCCCCCEEECcCCcCCC---CCC---CCCCcCEEECCCCCCCcC-CCC---CCCCCEEECcCCcCC-Cc
Confidence 9999887 68999999999999988 555 678999999999999875 443 489999999999998 45
Q ss_pred CccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCC
Q 002346 204 PASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPA 283 (933)
Q Consensus 204 p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~ 283 (933)
|.. +++|+.|++++|+|++.+ ..+++|+.|+|++|+|++ +|.. +++
T Consensus 157 ~~~---------------------------~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~ 202 (622)
T 3g06_A 157 PAL---------------------------PSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-LPTL---PSE 202 (622)
T ss_dssp CCC---------------------------CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred CCc---------------------------cCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC-CCCc---cch
Confidence 542 467899999999999855 456889999999999984 5543 478
Q ss_pred CCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccc
Q 002346 284 LLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVT 363 (933)
Q Consensus 284 L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~ 363 (933)
|+.|++++|.++. +|..+.+|+.|+|++|+|.++ |
T Consensus 203 L~~L~L~~N~l~~-l~~~~~~L~~L~Ls~N~L~~l-----------------------------------------p--- 237 (622)
T 3g06_A 203 LYKLWAYNNRLTS-LPALPSGLKELIVSGNRLTSL-----------------------------------------P--- 237 (622)
T ss_dssp CCEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCC-----------------------------------------C---
T ss_pred hhEEECcCCcccc-cCCCCCCCCEEEccCCccCcC-----------------------------------------C---
Confidence 9999999999985 455678899999999988653 2
Q ss_pred cCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccCCC
Q 002346 364 CSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKVPD 433 (933)
Q Consensus 364 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p~ 433 (933)
..+++|+.|+|++|+|++ +|. .+++|+.|+|++|+|+ .+|..|.++++|+.|+|++|+|++.+|.
T Consensus 238 ~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 223689999999999984 666 6789999999999999 8899999999999999999999998875
No 298
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.3e-28 Score=281.88 Aligned_cols=314 Identities=20% Similarity=0.269 Sum_probs=223.0
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEcc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLS 145 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 145 (933)
.+++.|++++|.+++ +|.. +++|++|++++|+++++.. + .++|++|+|++|+++++| .|+++++|++|+++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~-~--~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD-L--PPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVD 161 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS-C--CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC-C--CCCCCEEECcCCCCCCCc--ccCCCCCCCEEECC
Confidence 468888888888886 6643 3788888888888886432 2 168999999999999877 38889999999999
Q ss_pred CCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcc
Q 002346 146 DNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLS 225 (933)
Q Consensus 146 ~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~ 225 (933)
+|++.+ +|..+ .+|++|++++|++.+. | .++.+++|++|++++|++++ +|... ..|++|++++|.+..
T Consensus 162 ~N~l~~---lp~~~---~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~n~l~~- 229 (454)
T 1jl5_A 162 NNSLKK---LPDLP---PSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKK-LPDLP--LSLESIVAGNNILEE- 229 (454)
T ss_dssp SSCCSC---CCCCC---TTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCCCC--TTCCEEECCSSCCSS-
T ss_pred CCcCcc---cCCCc---ccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCc-CCCCc--CcccEEECcCCcCCc-
Confidence 998887 55443 4889999999998884 5 58889999999999999984 55543 478888998888762
Q ss_pred cccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCCCCCc
Q 002346 226 GTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSKV 305 (933)
Q Consensus 226 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 305 (933)
++.+..+++|+.|++++|++++.+.. .++|+.|++++|++++ +|.. +++|+.|++++|++++. |..+.++
T Consensus 230 --lp~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~~~~L 299 (454)
T 1jl5_A 230 --LPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SELPPNL 299 (454)
T ss_dssp --CCCCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCCCTTC
T ss_pred --ccccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCcCCcC
Confidence 23477889999999999999875432 3788999999999885 5654 37889999999998873 3445788
Q ss_pred cEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCch
Q 002346 306 QKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISP 385 (933)
Q Consensus 306 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~ 385 (933)
+.|++++|.+.+... .+..++.+...++.+..+|.. +++|+.|+|++|++++ +|.
T Consensus 300 ~~L~l~~N~l~~i~~---------------------~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~-lp~ 354 (454)
T 1jl5_A 300 YYLNASSNEIRSLCD---------------------LPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAE-VPE 354 (454)
T ss_dssp CEEECCSSCCSEECC---------------------CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC
T ss_pred CEEECcCCcCCcccC---------------------CcCcCCEEECCCCcccccccc---CCcCCEEECCCCcccc-ccc
Confidence 999999998876321 112233333334445557765 5899999999999995 676
Q ss_pred hhcCcccCCeEecccCcccC--CCCcccCCC-------------CCcCEEeccCCcCcc--cCCCCCCCc
Q 002346 386 AYANLTSLKNLYLQQNNLTG--PIPDGLTKL-------------ASLQNLDVSNNNLSG--KVPDFGSNV 438 (933)
Q Consensus 386 ~~~~l~~L~~L~L~~N~l~g--~~p~~~~~l-------------~~L~~l~ls~N~l~g--~~p~~~~~~ 438 (933)
.+++|++|+|++|++++ .+|.++..+ ++|+.|++++|+++| .+|.....+
T Consensus 355 ---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 355 ---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp ---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------
T ss_pred ---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 57999999999999999 899999888 899999999999998 777543333
No 299
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.1e-29 Score=274.11 Aligned_cols=256 Identities=21% Similarity=0.255 Sum_probs=146.5
Q ss_pred CCCCccccceEeCCCCCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCC
Q 002346 51 STGYCEWTGINCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVP 129 (933)
Q Consensus 51 ~~~~C~w~gv~c~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~ 129 (933)
..+.|.|.+|.|.. ++++ .+|..+. ++|++|+|++|+|+.+++ .|.++++|++|+|++|.++.+.
T Consensus 3 ~~C~C~~~~l~c~~-----------~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 68 (306)
T 2z66_A 3 SRCSCSGTEIRCNS-----------KGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68 (306)
T ss_dssp TTCEEETTEEECCS-----------SCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE
T ss_pred CCCeeCCCEEEcCC-----------CCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc
Confidence 45668998888864 3444 4444332 467777777777765554 3566666666666666665432
Q ss_pred --CCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCC-hhhcCCCCCCEEEccCCcCCCCCCcc
Q 002346 130 --TGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIP-DFFDSFSNLQNLRLSYNNFTGSLPAS 206 (933)
Q Consensus 130 --~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~ 206 (933)
+..+..+++|++|+|++|.+.. +|..+..+++|++|++++|++.+..+ ..+..+++|++|+|++|++++..|..
T Consensus 69 ~~~~~~~~~~~L~~L~Ls~n~i~~---l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 145 (306)
T 2z66_A 69 CCSQSDFGTTSLKYLDLSFNGVIT---MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145 (306)
T ss_dssp EEEHHHHSCSCCCEEECCSCSEEE---EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT
T ss_pred CcccccccccccCEEECCCCcccc---ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh
Confidence 2234445566666666655544 44445555555555555555554433 34555555555555555554433333
Q ss_pred ccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccc-cCcccccCCCCCC
Q 002346 207 FAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTG-VVPASVISLPALL 285 (933)
Q Consensus 207 ~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~-~~p~~l~~l~~L~ 285 (933)
+..+++|+.|+|++|++++ .+|..+..+++|+
T Consensus 146 -----------------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 146 -----------------------------------------------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp -----------------------------------------------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred -----------------------------------------------cccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 3444455555555555543 3445555555555
Q ss_pred EEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccC
Q 002346 286 NISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCS 365 (933)
Q Consensus 286 ~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~ 365 (933)
+|+|++|++++..| ..+..
T Consensus 179 ~L~Ls~n~l~~~~~-------------------------------------------------------------~~~~~ 197 (306)
T 2z66_A 179 FLDLSQCQLEQLSP-------------------------------------------------------------TAFNS 197 (306)
T ss_dssp EEECTTSCCCEECT-------------------------------------------------------------TTTTT
T ss_pred EEECCCCCcCCcCH-------------------------------------------------------------HHhcC
Confidence 55555555543222 12223
Q ss_pred CCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCC-CcCEEeccCCcCcccC
Q 002346 366 QGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLA-SLQNLDVSNNNLSGKV 431 (933)
Q Consensus 366 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~-~L~~l~ls~N~l~g~~ 431 (933)
+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+..++ +|++|+|++|++++..
T Consensus 198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 34455555555555555555667777777778887877777777777774 7888888888777653
No 300
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.1e-28 Score=280.37 Aligned_cols=247 Identities=25% Similarity=0.313 Sum_probs=189.4
Q ss_pred EEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCC
Q 002346 70 TISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNP 148 (933)
Q Consensus 70 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 148 (933)
.++..+.+|+ .+|..+. ++++.|+|++|+|+++.+ .|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4555566776 6676655 689999999999999887 79999999999999999999998899999999999999999
Q ss_pred CCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCccccc
Q 002346 149 NLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTL 228 (933)
Q Consensus 149 ~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~ 228 (933)
+.. ..+..+..+++|++|+|++|++....+..|..+++|++|+|++|+..+.++..
T Consensus 124 l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---------------------- 179 (440)
T 3zyj_A 124 LTT--IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG---------------------- 179 (440)
T ss_dssp CSS--CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT----------------------
T ss_pred CCe--eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc----------------------
Confidence 887 34457888999999999999998888888889999999999985544455442
Q ss_pred ccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCCCCCccEE
Q 002346 229 DVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSKVQKV 308 (933)
Q Consensus 229 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 308 (933)
.|.++++|+.|+|++|+++. +|.+..+++|+.|+|++|+|++..|..|.++++|+.|+|++|++++
T Consensus 180 -~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------ 245 (440)
T 3zyj_A 180 -AFEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV------------ 245 (440)
T ss_dssp -TTTTCSSCCEEECTTSCCSS-CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE------------
T ss_pred -hhhcccccCeecCCCCcCcc-ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE------------
Confidence 13457888888888888874 3567777777777777777777667777777777777776666654
Q ss_pred eccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhc
Q 002346 309 SLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYA 388 (933)
Q Consensus 309 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~ 388 (933)
..|..|.
T Consensus 246 -------------------------------------------------------------------------~~~~~~~ 252 (440)
T 3zyj_A 246 -------------------------------------------------------------------------IERNAFD 252 (440)
T ss_dssp -------------------------------------------------------------------------ECTTSST
T ss_pred -------------------------------------------------------------------------EChhhhc
Confidence 3344566
Q ss_pred CcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCccc
Q 002346 389 NLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGK 430 (933)
Q Consensus 389 ~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~ 430 (933)
++++|+.|+|++|+|++..+..|..+++|+.|+|++|++...
T Consensus 253 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 667777777777777766666677777777777777776543
No 301
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.7e-28 Score=266.43 Aligned_cols=287 Identities=18% Similarity=0.234 Sum_probs=221.3
Q ss_pred CCCCCccccceEeCC----------CCCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCcee
Q 002346 50 SSTGYCEWTGINCDN----------SNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDI 118 (933)
Q Consensus 50 ~~~~~C~w~gv~c~~----------~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L 118 (933)
+..+.|.|+.+.|.. ...++.|+|++|++++..+..|+.+++|++|+|++|.|++..| .|..+++|++|
T Consensus 26 p~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 26 PFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp CTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 345678999999974 2478999999999998877899999999999999999999877 89999999999
Q ss_pred ccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCC--CCChhhcCCCCCCEEEccC
Q 002346 119 YLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFG--LIPDFFDSFSNLQNLRLSY 196 (933)
Q Consensus 119 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~ 196 (933)
+|++|+++.++...+ ++|++|+|++|++.. ..+..+.++++|+.|++++|.+.. ..+..|..+++|++|++++
T Consensus 106 ~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 106 YLSKNQLKELPEKMP---KTLQELRVHENEITK--VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp ECCSSCCSBCCSSCC---TTCCEEECCSSCCCB--BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred ECCCCcCCccChhhc---ccccEEECCCCcccc--cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 999999999987754 799999999999988 445678999999999999999964 7888999999999999999
Q ss_pred CcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCC-CCCCCCCCCEEEccCCcccccCc
Q 002346 197 NNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIP-DLSKCESLFDLSLRDNQLTGVVP 275 (933)
Q Consensus 197 N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~L~~L~L~~N~l~~~~p 275 (933)
|+++ .+|..+ .++|+.|+|++|++++..+ .+..+++|+.|+|++|++++..+
T Consensus 181 n~l~-~l~~~~--------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 233 (330)
T 1xku_A 181 TNIT-TIPQGL--------------------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233 (330)
T ss_dssp SCCC-SCCSSC--------------------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred Cccc-cCCccc--------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh
Confidence 9998 677654 2566777777777766554 36667777777777777776666
Q ss_pred ccccCCCCCCEEEccCccCccCCCCC--CCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCC
Q 002346 276 ASVISLPALLNISLQNNKLQGPYPLF--PSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGN 353 (933)
Q Consensus 276 ~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 353 (933)
..+..+++|++|+|++|+++..+..+ ..+|+.|+|++|+|++.....+.+.
T Consensus 234 ~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~--------------------------- 286 (330)
T 1xku_A 234 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP--------------------------- 286 (330)
T ss_dssp TTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS---------------------------
T ss_pred hhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCc---------------------------
Confidence 66777777777777777776332222 2456677777777765543322110
Q ss_pred CCCCCCCccccCCCceeEEEccCccccC--cCchhhcCcccCCeEecccCc
Q 002346 354 NACDGWPFVTCSQGRIITINLANKLLAG--NISPAYANLTSLKNLYLQQNN 402 (933)
Q Consensus 354 ~~~~~~p~~~~~l~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~L~~N~ 402 (933)
........|+.|+|++|.+.. ..|..|..+.+|+.|+|++|+
T Consensus 287 -------~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 287 -------GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp -------SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred -------ccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 011224678899999998864 567889999999999999996
No 302
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3e-28 Score=280.10 Aligned_cols=247 Identities=23% Similarity=0.290 Sum_probs=192.0
Q ss_pred EEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCC
Q 002346 71 ISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPN 149 (933)
Q Consensus 71 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~ 149 (933)
++.++.+++ .+|..+. ++|++|+|++|+|+++.+ .|.++++|++|+|++|+|+++++..|.++++|++|+|++|++
T Consensus 59 v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 59 VVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 444455666 5665554 689999999999999887 799999999999999999999988999999999999999998
Q ss_pred CCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccc
Q 002346 150 LAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLD 229 (933)
Q Consensus 150 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~ 229 (933)
.. ..+..+..+++|++|+|++|++....+..|..+++|++|+|++|+..+.++..
T Consensus 136 ~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~----------------------- 190 (452)
T 3zyi_A 136 TV--IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG----------------------- 190 (452)
T ss_dssp SB--CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-----------------------
T ss_pred Cc--cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-----------------------
Confidence 87 34556888999999999999998888888999999999999985544455542
Q ss_pred cccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCCCCCccEEe
Q 002346 230 VLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSKVQKVS 309 (933)
Q Consensus 230 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 309 (933)
.|.++++|+.|+|++|++++. |.+..+++|+.|+|++|+|++..|..|.++++|+.|+|++|++++.
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------ 257 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI------------ 257 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE------------
T ss_pred hccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE------------
Confidence 134578888888888888864 5677788888888888888877777777777777777777776643
Q ss_pred ccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcC
Q 002346 310 LDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYAN 389 (933)
Q Consensus 310 l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~ 389 (933)
.|..|.+
T Consensus 258 -------------------------------------------------------------------------~~~~~~~ 264 (452)
T 3zyi_A 258 -------------------------------------------------------------------------ERNAFDG 264 (452)
T ss_dssp -------------------------------------------------------------------------CTTTTTT
T ss_pred -------------------------------------------------------------------------CHHHhcC
Confidence 3445666
Q ss_pred cccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccC
Q 002346 390 LTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKV 431 (933)
Q Consensus 390 l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~ 431 (933)
+++|+.|+|++|+|++..+..|..+++|+.|+|++|++....
T Consensus 265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 777777777777777666666777777777777777776543
No 303
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.9e-29 Score=274.89 Aligned_cols=250 Identities=19% Similarity=0.178 Sum_probs=161.8
Q ss_pred cccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCC-Cccc-------CCCCCCEEEccCCCCCCCCCC
Q 002346 85 EISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPT-GCFD-------GLTNLQVLSLSDNPNLAPWPF 155 (933)
Q Consensus 85 ~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~-------~l~~L~~L~Ls~N~~~~~~~~ 155 (933)
.++..++|+.|++++|.+ .+| .+... |++|+|++|.++.+.. ..+. ++++|++|+|++|++.+ .+
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~ 111 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG--TA 111 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS--CC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc--hh
Confidence 345666777777777777 344 44433 7777777777754221 1122 46677777777776665 35
Q ss_pred Cccc--cCCccCCeeeccCcccCCCCChhhcCC-----CCCCEEEccCCcCCCCCCccccccccchhhcccccCCccccc
Q 002346 156 PNEL--TKSTSLTTLYMDNANIFGLIPDFFDSF-----SNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTL 228 (933)
Q Consensus 156 p~~~--~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~ 228 (933)
|..+ ..+++|++|+|++|++++. |..++.+ ++|++|+|++|++++..|..|..
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~------------------- 171 (312)
T 1wwl_A 112 PPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV------------------- 171 (312)
T ss_dssp CCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC-------------------
T ss_pred HHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc-------------------
Confidence 5554 6667777777777777666 6666555 67777777777776555554433
Q ss_pred ccccCCccCcEEEecCCccCCC---CCCC--CCCCCCCEEEccCCcccc--cCc-ccccCCCCCCEEEccCccCccCCCC
Q 002346 229 DVLSGMTQLRQVWLHKNQFTGP---IPDL--SKCESLFDLSLRDNQLTG--VVP-ASVISLPALLNISLQNNKLQGPYPL 300 (933)
Q Consensus 229 ~~l~~l~~L~~L~L~~N~l~~~---~~~~--~~~~~L~~L~L~~N~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~ 300 (933)
+++|++|+|++|++.+. ++.+ ..+++|+.|+|++|+|++ .++ ..+..+++|++|+|++|++++.+|.
T Consensus 172 -----l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 246 (312)
T 1wwl_A 172 -----FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246 (312)
T ss_dssp -----CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred -----CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch
Confidence 66677777777766553 2222 666777777777777762 122 3344667777777777777664431
Q ss_pred CCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCcccc
Q 002346 301 FPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLA 380 (933)
Q Consensus 301 ~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 380 (933)
..+..+++|+.|+|++|+++
T Consensus 247 ------------------------------------------------------------~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 247 ------------------------------------------------------------PSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp ------------------------------------------------------------SCCCCCTTCCEEECTTSCCS
T ss_pred ------------------------------------------------------------hhhhhcCCCCEEECCCCccC
Confidence 01122467778888888887
Q ss_pred CcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCccc
Q 002346 381 GNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGK 430 (933)
Q Consensus 381 g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~ 430 (933)
.+|..+. ++|+.|+|++|+|++. |. +..+++|++|++++|+|++.
T Consensus 267 -~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 267 -QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp -SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred -hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 6777666 7888888888888865 65 88888888888888888763
No 304
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.7e-30 Score=298.69 Aligned_cols=221 Identities=21% Similarity=0.262 Sum_probs=171.6
Q ss_pred CcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCC
Q 002346 111 NATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQ 190 (933)
Q Consensus 111 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 190 (933)
.+++|++|+|++|.|+++++..|..+++|++|+|++|.+.+ ..| +..+++|++|+|++|.|++..+ .++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLD--LESLSTLRTLDLNNNYVQELLV-----GPSIE 102 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE--EEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC--Ccc--cccCCCCCEEEecCCcCCCCCC-----CCCcC
Confidence 34577777777777777777777777888888888887766 222 7778888888888888776532 37888
Q ss_pred EEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCC-CCCCCCCCCEEEccCCc
Q 002346 191 NLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIP-DLSKCESLFDLSLRDNQ 269 (933)
Q Consensus 191 ~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~L~~L~L~~N~ 269 (933)
+|+|++|++++..+. .+++|+.|+|++|.+++.+| .+..+++|+.|+|++|+
T Consensus 103 ~L~L~~N~l~~~~~~---------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (487)
T 3oja_A 103 TLHAANNNISRVSCS---------------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (487)
T ss_dssp EEECCSSCCCCEEEC---------------------------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC
T ss_pred EEECcCCcCCCCCcc---------------------------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC
Confidence 888988888854332 15678889999999988766 57888999999999999
Q ss_pred ccccCccccc-CCCCCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccC
Q 002346 270 LTGVVPASVI-SLPALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSD 348 (933)
Q Consensus 270 l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 348 (933)
|++.+|..+. .+++|+.|+|++|.+++..+
T Consensus 156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~------------------------------------------------- 186 (487)
T 3oja_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKG------------------------------------------------- 186 (487)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-------------------------------------------------
T ss_pred CCCcChHHHhhhCCcccEEecCCCccccccc-------------------------------------------------
Confidence 9988888876 78999999999999886422
Q ss_pred CCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCc
Q 002346 349 SWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLS 428 (933)
Q Consensus 349 ~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~ 428 (933)
...+++|+.|+|++|.+++ +|+.|+.+++|+.|+|++|+|++ +|..+..+++|+.|++++|++.
T Consensus 187 --------------~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 187 --------------QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp --------------CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred --------------cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 1124678888888888887 44458889999999999999994 7888888999999999999887
Q ss_pred -ccCC
Q 002346 429 -GKVP 432 (933)
Q Consensus 429 -g~~p 432 (933)
+.+|
T Consensus 251 c~~~~ 255 (487)
T 3oja_A 251 CGTLR 255 (487)
T ss_dssp HHHHH
T ss_pred CcchH
Confidence 4443
No 305
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.8e-27 Score=255.88 Aligned_cols=199 Identities=25% Similarity=0.337 Sum_probs=154.5
Q ss_pred EEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCC
Q 002346 69 TTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDN 147 (933)
Q Consensus 69 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 147 (933)
+.+++++++++ .+|..+ .++|++|+|++|.|+++++ .|..+++|++|+|++|.++++.+..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67778888887 456543 4689999999999998877 6888999999999999999888888888999999999988
Q ss_pred C-CCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCccc
Q 002346 148 P-NLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSG 226 (933)
Q Consensus 148 ~-~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~ 226 (933)
. +.. ..|..+..+++|++|+|++|++.+..|..|..+++|++|+|++|++++..+..|.
T Consensus 91 ~~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------ 150 (285)
T 1ozn_A 91 AQLRS--VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR------------------ 150 (285)
T ss_dssp TTCCC--CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT------------------
T ss_pred CCccc--cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc------------------
Confidence 7 665 3467788888888888888888888788888888888888888888744443333
Q ss_pred ccccccCCccCcEEEecCCccCCCCCC-CCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCcc
Q 002346 227 TLDVLSGMTQLRQVWLHKNQFTGPIPD-LSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQG 296 (933)
Q Consensus 227 ~~~~l~~l~~L~~L~L~~N~l~~~~~~-~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 296 (933)
.+++|+.|+|++|++++.++. +..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++
T Consensus 151 ------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 151 ------DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp ------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ------cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence 367777777777777766654 6677777777777777777767777777777777777776664
No 306
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=8.1e-27 Score=248.53 Aligned_cols=217 Identities=26% Similarity=0.394 Sum_probs=193.6
Q ss_pred CCCccccceEeCCCCCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCC
Q 002346 52 TGYCEWTGINCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPT 130 (933)
Q Consensus 52 ~~~C~w~gv~c~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~ 130 (933)
.++|.|.|+.|.....++.+++++++|+ .+|..+. ++|++|+|++|+|+++++ .|.++++|++|+|++|.|+.++.
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 3689999999987777889999999999 5776654 689999999999998887 79999999999999999999999
Q ss_pred CcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCcccccc
Q 002346 131 GCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKS 210 (933)
Q Consensus 131 ~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 210 (933)
..|.++++|++|+|++|++.. ..+..+..+++|++|+|++|++.+..+..|..+++|++|+|++|++++..+..|
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--- 153 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQA--LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF--- 153 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCC--CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---
T ss_pred hhhcCCCCCCEEECCCCcCCc--CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHc---
Confidence 999999999999999999988 345677999999999999999999999999999999999999999995444434
Q ss_pred ccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCCC-CCCCCCCCEEEccCCcccccCcccccCCCCCCEEEc
Q 002346 211 DIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPD-LSKCESLFDLSLRDNQLTGVVPASVISLPALLNISL 289 (933)
Q Consensus 211 ~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 289 (933)
..+++|+.|+|++|++++.++. +..+++|+.|+|++|++++..+..|..+++|+.|+|
T Consensus 154 ---------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 154 ---------------------DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp ---------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ---------------------cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 3489999999999999998875 888999999999999999777778999999999999
Q ss_pred cCccCccC
Q 002346 290 QNNKLQGP 297 (933)
Q Consensus 290 s~N~l~~~ 297 (933)
++|++...
T Consensus 213 ~~N~~~c~ 220 (270)
T 2o6q_A 213 QENPWDCT 220 (270)
T ss_dssp CSSCBCCS
T ss_pred cCCCeeCC
Confidence 99998754
No 307
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.95 E-value=9e-29 Score=289.73 Aligned_cols=187 Identities=20% Similarity=0.141 Sum_probs=132.4
Q ss_pred ccccCCCeEEEEE-EeCCCcEEEEEEeccccC--------CchhHHHHHHHHHHHHhc-CCCcceeEEeEeeeCceeEEE
Q 002346 588 ILGRGGFGVVYGG-ELPDGTKIAVKRMESNTM--------GNKGLSEFQAEIAVLTKV-RHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 588 ~lg~G~~g~Vy~~-~~~~~~~vavK~~~~~~~--------~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 657 (933)
..+.|++|.+..+ +..-|+.||||++.+... .....++|.+|+++|+++ .|+||++++++++++...|||
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV 320 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV 320 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence 4677777766665 344689999999976532 123356799999999999 799999999999999999999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||++|++|.++|.+ .++++.. +|+.||+.||+|+|+ +|||||||||+|||+++++.+||+|||+|+..
T Consensus 321 MEyv~G~~L~d~i~~-----~~~l~~~---~I~~QIl~AL~ylH~---~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~ 389 (569)
T 4azs_A 321 MEKLPGRLLSDMLAA-----GEEIDRE---KILGSLLRSLAALEK---QGFWHDDVRPWNVMVDARQHARLIDFGSIVTT 389 (569)
T ss_dssp EECCCSEEHHHHHHT-----TCCCCHH---HHHHHHHHHHHHHHH---TTCEESCCCGGGEEECTTSCEEECCCTTEESC
T ss_pred EecCCCCcHHHHHHh-----CCCCCHH---HHHHHHHHHHHHHHH---CCceeccCchHhEEECCCCCEEEeecccCeeC
Confidence 999999999999965 2456654 489999999999999 99999999999999999999999999999866
Q ss_pred CCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCC
Q 002346 738 PDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKA 787 (933)
Q Consensus 738 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p 787 (933)
..... .....+||++|+|||++.+ .+..++|+||+|++++++.++..+
T Consensus 390 ~~~~~-~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 390 PQDCS-WPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp C---C-CSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred CCCCc-cccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence 54332 2344689999999999874 567889999999998887665443
No 308
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.7e-27 Score=254.58 Aligned_cols=206 Identities=23% Similarity=0.293 Sum_probs=188.6
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceecccccc-ccCCCCCcccCCCCCCEEE
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNN-FTSVPTGCFDGLTNLQVLS 143 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 143 (933)
..++.|+|++|++++..+..|..+++|++|+|++|.|+++.| .|.++++|++|+|++|. ++.+++..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 479999999999998888889999999999999999999877 89999999999999997 9999888999999999999
Q ss_pred ccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCC
Q 002346 144 LSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLG 223 (933)
Q Consensus 144 Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~ 223 (933)
|++|++.. ..|..+.++++|++|+|++|++.+..+..|+.+++|++|+|++|++++..+..+.
T Consensus 112 l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------------- 174 (285)
T 1ozn_A 112 LDRCGLQE--LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR--------------- 174 (285)
T ss_dssp CTTSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT---------------
T ss_pred CCCCcCCE--ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhc---------------
Confidence 99999998 5578899999999999999999999888899999999999999999954444443
Q ss_pred cccccccccCCccCcEEEecCCccCCCCC-CCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccC
Q 002346 224 LSGTLDVLSGMTQLRQVWLHKNQFTGPIP-DLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGP 297 (933)
Q Consensus 224 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 297 (933)
++++|+.|+|++|++++..| .+..+++|+.|+|++|++++..+..+..+++|+.|+|++|++...
T Consensus 175 ---------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 175 ---------GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp ---------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred ---------CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 48999999999999999866 588999999999999999987778899999999999999999853
No 309
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6.8e-27 Score=256.13 Aligned_cols=201 Identities=20% Similarity=0.267 Sum_probs=154.2
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCccc---------CC
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFD---------GL 136 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------~l 136 (933)
.+++.|+|++|+++ .+|..++.+++|++|+|++|.|+.+++.+.++++|++|+|++|++.+..+..+. ++
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 47999999999999 899999999999999999999995544899999999999999877765444444 37
Q ss_pred CCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhh
Q 002346 137 TNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLW 216 (933)
Q Consensus 137 ~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~ 216 (933)
++|++|+|++|++.. +|..+.++++|++|+|++|++.+. |..++.+++|++|+|++|++.+.+|..+..
T Consensus 183 ~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~------- 251 (328)
T 4fcg_A 183 VNLQSLRLEWTGIRS---LPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGG------- 251 (328)
T ss_dssp TTCCEEEEEEECCCC---CCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTC-------
T ss_pred CCCCEEECcCCCcCc---chHhhcCCCCCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcC-------
Confidence 777777777777764 677777777777777777777753 556777777777777777777777765543
Q ss_pred cccccCCcccccccccCCccCcEEEecCCccCCCCC-CCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCc
Q 002346 217 MNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIP-DLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQ 295 (933)
Q Consensus 217 l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 295 (933)
+++|+.|+|++|++.+.+| .+..+++|+.|+|++|++.+.+|..+.++++|+.+++..|.+.
T Consensus 252 -----------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 252 -----------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp -----------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred -----------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 6777777777777766666 4667777777777777777777777777777777777766554
No 310
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.4e-28 Score=268.10 Aligned_cols=246 Identities=18% Similarity=0.182 Sum_probs=201.8
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeeccccccc-ccCC-Ccc-------CcCcCceeccccccccCCCCCcc--c
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIA-GAIP-SLA-------NATSLQDIYLDNNNFTSVPTGCF--D 134 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~p-~~~-------~l~~L~~L~Ls~N~l~~~~~~~~--~ 134 (933)
.+++.|++++|.+ .+|..+... |+.|+|++|.++ +.+| .+. ++++|++|+|++|++++..+..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 4678889999999 778777655 999999999994 4555 343 69999999999999996555444 8
Q ss_pred CCCCCCEEEccCCCCCCCCCCCccccCC-----ccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCC--Cccc
Q 002346 135 GLTNLQVLSLSDNPNLAPWPFPNELTKS-----TSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSL--PASF 207 (933)
Q Consensus 135 ~l~~L~~L~Ls~N~~~~~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~~ 207 (933)
.+++|++|+|++|++.+ +|..+..+ ++|++|+|++|++.+..|..|+.+++|++|+|++|++.+.+ |..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~---~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWAT---RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CSCCCSEEEEESCBCSS---SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred cCCCccEEEccCCCCcc---hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 99999999999999998 47888887 99999999999999999999999999999999999987652 2222
Q ss_pred cccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCC---C-CCCCCCCCEEEccCCcccccCc-ccccCCC
Q 002346 208 AKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIP---D-LSKCESLFDLSLRDNQLTGVVP-ASVISLP 282 (933)
Q Consensus 208 ~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~---~-~~~~~~L~~L~L~~N~l~~~~p-~~l~~l~ 282 (933)
. +..+++|++|+|++|++++... . +..+++|+.|+|++|++++.+| ..+..++
T Consensus 196 ~----------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 196 C----------------------PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp C----------------------TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred H----------------------hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 1 2458999999999999985332 2 4578999999999999998776 5566789
Q ss_pred CCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCcc
Q 002346 283 ALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFV 362 (933)
Q Consensus 283 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~ 362 (933)
+|++|+|++|+++ .+| ..
T Consensus 254 ~L~~L~Ls~N~l~-~ip-------------------------------------------------------------~~ 271 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVP-------------------------------------------------------------KG 271 (312)
T ss_dssp TCCEEECTTSCCS-SCC-------------------------------------------------------------SS
T ss_pred CCCEEECCCCccC-hhh-------------------------------------------------------------hh
Confidence 9999999999988 333 22
Q ss_pred ccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCC
Q 002346 363 TCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGP 406 (933)
Q Consensus 363 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~ 406 (933)
+. ++|+.|+|++|+|++. |. +..+++|+.|+|++|++++.
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 22 5788888888888876 55 88999999999999998853
No 311
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=4.9e-28 Score=268.90 Aligned_cols=258 Identities=18% Similarity=0.265 Sum_probs=215.7
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSL 144 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 144 (933)
..++.|++++|++++..+..|..+++|++|+|++|.|++.+| .|.++++|++|+|++|++++++...|.++++|++|+|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 589999999999998777799999999999999999999887 7999999999999999999999988999999999999
Q ss_pred cCCCCCCCCCCCc--cccCCccCCeeeccCc-ccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhccccc
Q 002346 145 SDNPNLAPWPFPN--ELTKSTSLTTLYMDNA-NIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQ 221 (933)
Q Consensus 145 s~N~~~~~~~~p~--~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~ 221 (933)
++|++.. +|. .+.++++|++|++++| .+.+..+..|..+++|++|+|++|++++..|..+..
T Consensus 132 ~~n~l~~---l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~------------ 196 (353)
T 2z80_A 132 LGNPYKT---LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS------------ 196 (353)
T ss_dssp TTCCCSS---SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT------------
T ss_pred CCCCCcc---cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc------------
Confidence 9999987 555 7899999999999999 577777889999999999999999999877877654
Q ss_pred CCcccccccccCCccCcEEEecCCccCCCCCC-CCCCCCCCEEEccCCcccccCcccccC---CCCCCEEEccCccCccC
Q 002346 222 LGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPD-LSKCESLFDLSLRDNQLTGVVPASVIS---LPALLNISLQNNKLQGP 297 (933)
Q Consensus 222 ~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~~~~~~L~~L~L~~N~l~~~~p~~l~~---l~~L~~L~Ls~N~l~~~ 297 (933)
+++|+.|++++|+++..++. +..+++|+.|+|++|++++..+..+.. .+.++.++|++|.+++.
T Consensus 197 ------------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 197 ------------IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp ------------CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred ------------cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 89999999999999765544 456899999999999999766554432 34555566665555421
Q ss_pred CCCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCc
Q 002346 298 YPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANK 377 (933)
Q Consensus 298 ~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N 377 (933)
. ...+|..+..+++|+.|+|++|
T Consensus 265 ----------------~-----------------------------------------l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 265 ----------------S-----------------------------------------LFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp ----------------H-----------------------------------------HHHHHHHHHTCTTCCEEECCSS
T ss_pred ----------------c-----------------------------------------hhhhHHHHhcccCCCEEECCCC
Confidence 0 1124556778899999999999
Q ss_pred cccCcCchh-hcCcccCCeEecccCcccCCCC
Q 002346 378 LLAGNISPA-YANLTSLKNLYLQQNNLTGPIP 408 (933)
Q Consensus 378 ~l~g~~p~~-~~~l~~L~~L~L~~N~l~g~~p 408 (933)
+++ .+|.. |+++++|+.|+|++|.+.+..|
T Consensus 288 ~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 288 QLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 999 56665 6999999999999999996554
No 312
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3e-28 Score=266.07 Aligned_cols=264 Identities=20% Similarity=0.198 Sum_probs=157.9
Q ss_pred cceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeec
Q 002346 92 LETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYM 170 (933)
Q Consensus 92 L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L 170 (933)
++.++++.+.+...+. .+..+++|++|+|++|+|+++++..|..+++|++|+|++|++.+ .+. +..+++|++|+|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~-~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE---TLD-LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE---EEE-ETTCTTCCEEEC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc---chh-hhhcCCCCEEEC
Confidence 3444555555544333 23344556666666666666555556666666666666666554 121 566666666666
Q ss_pred cCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCC
Q 002346 171 DNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGP 250 (933)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 250 (933)
++|++++.. ..++|++|++++|++++..+. .+++|+.|+|++|++++.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---------------------------~~~~L~~L~l~~N~l~~~ 135 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---------------------------RGQGKKNIYLANNKITML 135 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---------------------------CCSSCEEEECCSSCCCSG
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---------------------------ccCCCCEEECCCCCCCCc
Confidence 666665432 236677777777766633221 145667777777777665
Q ss_pred CC-CCCCCCCCCEEEccCCcccccCccccc-CCCCCCEEEccCccCccCCCC-CCCCccEEeccCCcCCCCCCCCCCCCC
Q 002346 251 IP-DLSKCESLFDLSLRDNQLTGVVPASVI-SLPALLNISLQNNKLQGPYPL-FPSKVQKVSLDHNNFCKNSSDAGKPCD 327 (933)
Q Consensus 251 ~~-~~~~~~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~l~~n~~~~~~~~~~~~~~ 327 (933)
.+ .+..+++|+.|+|++|++++..+..+. .+++|++|+|++|.+++..+. ...+|+.|+|++|++.+
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~---------- 205 (317)
T 3o53_A 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF---------- 205 (317)
T ss_dssp GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE----------
T ss_pred cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCc----------
Confidence 55 466667777777777777766665553 567777777777777654221 23445555555555432
Q ss_pred chhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCccc-CC
Q 002346 328 PQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLT-GP 406 (933)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~-g~ 406 (933)
+|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++. +.
T Consensus 206 -------------------------------l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 206 -------------------------------MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp -------------------------------ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred -------------------------------chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcC
Confidence 2233445567777777777777 35666777777777777777776 66
Q ss_pred CCcccCCCCCcCEEecc-CCcCcccCCC
Q 002346 407 IPDGLTKLASLQNLDVS-NNNLSGKVPD 433 (933)
Q Consensus 407 ~p~~~~~l~~L~~l~ls-~N~l~g~~p~ 433 (933)
+|..+..+++|+.++++ .+.++|..|.
T Consensus 254 ~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred HHHHHhccccceEEECCCchhccCCchh
Confidence 67777777777777777 4455665553
No 313
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=8.5e-27 Score=253.52 Aligned_cols=219 Identities=21% Similarity=0.217 Sum_probs=182.8
Q ss_pred ccccceEeCC---CCCEEEEEecCCCCccccCccccCCcccceeecccccccccC--C-CccCcCcCceeccccccccCC
Q 002346 55 CEWTGINCDN---SNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAI--P-SLANATSLQDIYLDNNNFTSV 128 (933)
Q Consensus 55 C~w~gv~c~~---~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--p-~~~~l~~L~~L~Ls~N~l~~~ 128 (933)
|...|++-.. ...++.|+|++|+++...+..|..+++|++|+|++|.|+... + .+..+++|++|+|++|.++.+
T Consensus 14 c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l 93 (306)
T 2z66_A 14 CNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 93 (306)
T ss_dssp CCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE
T ss_pred cCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC
Confidence 5555544432 357999999999999655556899999999999999998542 3 677899999999999999988
Q ss_pred CCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCC-CCCccc
Q 002346 129 PTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTG-SLPASF 207 (933)
Q Consensus 129 ~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~ 207 (933)
+.. +..+++|++|+|++|++.... ....+..+++|++|++++|.+.+..+..|..+++|++|+|++|++++ .+|..+
T Consensus 94 ~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 171 (306)
T 2z66_A 94 SSN-FLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171 (306)
T ss_dssp EEE-EETCTTCCEEECTTSEEESST-TTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred hhh-cCCCCCCCEEECCCCcccccc-cchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence 765 889999999999999998721 12578999999999999999999999999999999999999999986 456654
Q ss_pred cccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCC-CCCCCCCCCEEEccCCcccccCcccccCCCCCCE
Q 002346 208 AKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIP-DLSKCESLFDLSLRDNQLTGVVPASVISLPALLN 286 (933)
Q Consensus 208 ~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 286 (933)
. .+++|+.|+|++|++++.++ .+..+++|+.|+|++|++++..+..+..+++|+.
T Consensus 172 ~------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 172 T------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp T------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred h------------------------hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence 4 38889999999999988766 4788888999999999888777777888888888
Q ss_pred EEccCccCccCCC
Q 002346 287 ISLQNNKLQGPYP 299 (933)
Q Consensus 287 L~Ls~N~l~~~~p 299 (933)
|+|++|++++..|
T Consensus 228 L~L~~N~l~~~~~ 240 (306)
T 2z66_A 228 LDYSLNHIMTSKK 240 (306)
T ss_dssp EECTTSCCCBCSS
T ss_pred eECCCCCCcccCH
Confidence 8888888886544
No 314
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=8.1e-26 Score=259.81 Aligned_cols=245 Identities=19% Similarity=0.211 Sum_probs=169.5
Q ss_pred cceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeecc
Q 002346 92 LETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMD 171 (933)
Q Consensus 92 L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~ 171 (933)
...++.+++.++.++..+. ++|++|+|++|+|+++++..|.++++|++|+|++|++.. ..+..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ--IEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC--cChhhccCcccCCEEECC
Confidence 3457777777776554443 577888888888877777777777777777777776665 334555666666666666
Q ss_pred CcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCC
Q 002346 172 NANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPI 251 (933)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 251 (933)
+|++++..+..|..+++|++|+|++|+++ ..+
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------------------------------------------------~~~ 163 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIE------------------------------------------------SIP 163 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCC------------------------------------------------EEC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcc------------------------------------------------eeC
Confidence 66665555555555556666666655555 332
Q ss_pred C-CCCCCCCCCEEEccC-CcccccCcccccCCCCCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCch
Q 002346 252 P-DLSKCESLFDLSLRD-NQLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQ 329 (933)
Q Consensus 252 ~-~~~~~~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~ 329 (933)
+ .+..+++|+.|+|++ |.+....+..|.++++|++|+|++|++++. |
T Consensus 164 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~------------------------------ 212 (452)
T 3zyi_A 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P------------------------------ 212 (452)
T ss_dssp TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C------------------------------
T ss_pred HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c------------------------------
Confidence 2 244455555555555 333333334566677777777777766642 1
Q ss_pred hhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCc
Q 002346 330 VTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPD 409 (933)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~ 409 (933)
.+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|.
T Consensus 213 --------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 260 (452)
T 3zyi_A 213 --------------------------------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260 (452)
T ss_dssp --------------------------------CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT
T ss_pred --------------------------------cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH
Confidence 122346788888888888888889999999999999999999999999
Q ss_pred ccCCCCCcCEEeccCCcCcccCCCCC---CCcccccCCCCCCcCC
Q 002346 410 GLTKLASLQNLDVSNNNLSGKVPDFG---SNVKFTVSPGNPFIGT 451 (933)
Q Consensus 410 ~~~~l~~L~~l~ls~N~l~g~~p~~~---~~~~~~~~~~n~~~~~ 451 (933)
.|..+++|+.|+|++|+|++.++... ..++...+.+|||.|.
T Consensus 261 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 99999999999999999998887643 3344556789999884
No 315
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1e-25 Score=258.06 Aligned_cols=246 Identities=18% Similarity=0.212 Sum_probs=171.7
Q ss_pred cceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeecc
Q 002346 92 LETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMD 171 (933)
Q Consensus 92 L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~ 171 (933)
...++.+++.++.++..+. ++++.|+|++|+|+.+++..|.++++|++|+|++|++.. ..+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT--IEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE--ECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc--cChhhccCCccCCEEECC
Confidence 3467888888886665554 678888888888888887778778888888887777765 334556666666666666
Q ss_pred CcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCC
Q 002346 172 NANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPI 251 (933)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 251 (933)
+|++++..+..|..+++|++|+|++|++++..+..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~--------------------------------------------- 155 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA--------------------------------------------- 155 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTT---------------------------------------------
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHH---------------------------------------------
Confidence 66666555555666666666666666655222222
Q ss_pred CCCCCCCCCCEEEccCC-cccccCcccccCCCCCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchh
Q 002346 252 PDLSKCESLFDLSLRDN-QLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQV 330 (933)
Q Consensus 252 ~~~~~~~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~ 330 (933)
|..+++|+.|+|++| .+....+..|.++++|++|+|++|+++.. |
T Consensus 156 --~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~------------------------------- 201 (440)
T 3zyj_A 156 --FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P------------------------------- 201 (440)
T ss_dssp --TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-------------------------------
T ss_pred --hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-------------------------------
Confidence 344455555555552 23323333566666666666666666521 1
Q ss_pred hhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcc
Q 002346 331 TTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDG 410 (933)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~ 410 (933)
.+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..
T Consensus 202 -------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 250 (440)
T 3zyj_A 202 -------------------------------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250 (440)
T ss_dssp -------------------------------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTS
T ss_pred -------------------------------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhh
Confidence 1233467777888888888778889999999999999999999999999
Q ss_pred cCCCCCcCEEeccCCcCcccCCCCC---CCcccccCCCCCCcCC
Q 002346 411 LTKLASLQNLDVSNNNLSGKVPDFG---SNVKFTVSPGNPFIGT 451 (933)
Q Consensus 411 ~~~l~~L~~l~ls~N~l~g~~p~~~---~~~~~~~~~~n~~~~~ 451 (933)
|..+++|+.|+|++|+|++..+... ..++...+.+|||.|.
T Consensus 251 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp STTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred hcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 9999999999999999998887643 3444556789999884
No 316
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=6.8e-25 Score=258.40 Aligned_cols=258 Identities=22% Similarity=0.252 Sum_probs=212.0
Q ss_pred CcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCee
Q 002346 89 LTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTL 168 (933)
Q Consensus 89 l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L 168 (933)
..+++.|++++|.|+.+++.+. ++|++|+|++|+|+.++. .+++|++|+|++|+++. +|. .+++|++|
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~---lp~---~l~~L~~L 106 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS---LPV---LPPGLLEL 106 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC---CCC---CCTTCCEE
T ss_pred CCCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc---CCC---CCCCCCEE
Confidence 4569999999999996555565 899999999999999887 57999999999999987 666 78999999
Q ss_pred eccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccC
Q 002346 169 YMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFT 248 (933)
Q Consensus 169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~ 248 (933)
+|++|++++..+ .+++|++|+|++|+++ .+|.. +++|+.|+|++|+++
T Consensus 107 ~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~-~lp~~---------------------------l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 107 SIFSNPLTHLPA----LPSGLCKLWIFGNQLT-SLPVL---------------------------PPGLQELSVSDNQLA 154 (622)
T ss_dssp EECSCCCCCCCC----CCTTCCEEECCSSCCS-CCCCC---------------------------CTTCCEEECCSSCCS
T ss_pred ECcCCcCCCCCC----CCCCcCEEECCCCCCC-cCCCC---------------------------CCCCCEEECcCCcCC
Confidence 999999988644 5789999999999998 56643 578999999999999
Q ss_pred CCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCc
Q 002346 249 GPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDP 328 (933)
Q Consensus 249 ~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~ 328 (933)
+.+. .+.+|+.|++++|+|++ +| ..+++|+.|+|++|.+++ +|..+.+|+.|++++|.+...+
T Consensus 155 ~l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~--------- 217 (622)
T 3g06_A 155 SLPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLP--------- 217 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCC---------
T ss_pred CcCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccC---------
Confidence 8654 34789999999999994 66 457899999999999997 5556789999999999886432
Q ss_pred hhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCC
Q 002346 329 QVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIP 408 (933)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p 408 (933)
. ..++|+.|+|++|+|++ +| ..+++|+.|+|++|+|+ .+|
T Consensus 218 --------------------------------~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp 257 (622)
T 3g06_A 218 --------------------------------A---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLP 257 (622)
T ss_dssp --------------------------------C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCC
T ss_pred --------------------------------C---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCC
Confidence 1 12689999999999997 66 56789999999999999 677
Q ss_pred cccCCCCCcCEEeccCCcCcccCCCCCC--CcccccCCCCCCcC
Q 002346 409 DGLTKLASLQNLDVSNNNLSGKVPDFGS--NVKFTVSPGNPFIG 450 (933)
Q Consensus 409 ~~~~~l~~L~~l~ls~N~l~g~~p~~~~--~~~~~~~~~n~~~~ 450 (933)
. .+++|+.|+|++|+|+..++.+.. .++...+.+|++.+
T Consensus 258 ~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 258 M---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp C---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred c---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 6 678999999999999954433433 33334566777753
No 317
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=1.8e-29 Score=291.57 Aligned_cols=326 Identities=17% Similarity=0.227 Sum_probs=201.9
Q ss_pred CEEEEEecCCCCcc----ccCccccCCcccceeecccccccccCC-Cc-cCcC----cCceeccccccccCC----CCCc
Q 002346 67 RVTTISLAKSGLSG----TLSPEISSLTQLETLSFQMNNIAGAIP-SL-ANAT----SLQDIYLDNNNFTSV----PTGC 132 (933)
Q Consensus 67 ~v~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~-~~l~----~L~~L~Ls~N~l~~~----~~~~ 132 (933)
+++.|+|++|+++. .++..+..+++|++|+|++|.+++..+ .+ ..++ +|++|+|++|+++.. .+..
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 46666666666653 345556666667777777766655322 22 2233 567777777766632 2445
Q ss_pred ccCCCCCCEEEccCCCCCCCCCCCccc-----cCCccCCeeeccCcccCCCC----ChhhcCCCCCCEEEccCCcCCCCC
Q 002346 133 FDGLTNLQVLSLSDNPNLAPWPFPNEL-----TKSTSLTTLYMDNANIFGLI----PDFFDSFSNLQNLRLSYNNFTGSL 203 (933)
Q Consensus 133 ~~~l~~L~~L~Ls~N~~~~~~~~p~~~-----~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~ 203 (933)
+..+++|++|+|++|.+.. ..+..+ ..+++|++|+|++|++++.. +..+..+++|++|+|++|++++..
T Consensus 109 l~~~~~L~~L~Ls~n~i~~--~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGD--AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp TTSCTTCCEEECCSSBCHH--HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HccCCceeEEECCCCcCch--HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 6666677777777666543 111111 12445777777776666532 444555667777777777666443
Q ss_pred Cccccc------cccchhhcccccCCcccc---cccccCCccCcEEEecCCccCCCC-----CC-CCCCCCCCEEEccCC
Q 002346 204 PASFAK------SDIQNLWMNDQQLGLSGT---LDVLSGMTQLRQVWLHKNQFTGPI-----PD-LSKCESLFDLSLRDN 268 (933)
Q Consensus 204 p~~~~~------~~l~~l~l~~n~~~~~~~---~~~l~~l~~L~~L~L~~N~l~~~~-----~~-~~~~~~L~~L~L~~N 268 (933)
+..+.. ..|++|++++|.+...+. ...+..+++|+.|+|++|++++.. +. +..+++|+.|+|++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 333322 256666666666654331 233445666777777777665421 11 224666777777777
Q ss_pred ccccc----CcccccCCCCCCEEEccCccCccCCC--------CCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhh
Q 002346 269 QLTGV----VPASVISLPALLNISLQNNKLQGPYP--------LFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQI 336 (933)
Q Consensus 269 ~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 336 (933)
+++.. ++..+..+++|++|+|++|.+++..+ ....+|+.|+|++|.+....
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~----------------- 329 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC----------------- 329 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG-----------------
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH-----------------
Confidence 76643 45566666777777777776653221 11236667777766654321
Q ss_pred hcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcC-----cccCCeEecccCcccC----CC
Q 002346 337 AGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYAN-----LTSLKNLYLQQNNLTG----PI 407 (933)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~-----l~~L~~L~L~~N~l~g----~~ 407 (933)
+..++..+..+++|+.|+|++|++++..+..+.. .++|+.|+|++|++++ .+
T Consensus 330 -------------------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 390 (461)
T 1z7x_W 330 -------------------CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL 390 (461)
T ss_dssp -------------------HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred -------------------HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHH
Confidence 0123455667789999999999998876666653 6799999999999986 78
Q ss_pred CcccCCCCCcCEEeccCCcCccc
Q 002346 408 PDGLTKLASLQNLDVSNNNLSGK 430 (933)
Q Consensus 408 p~~~~~l~~L~~l~ls~N~l~g~ 430 (933)
|..+..+++|++|++++|++++.
T Consensus 391 ~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 391 AATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHhCCCccEEECCCCCCCHH
Confidence 88898999999999999998764
No 318
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.2e-27 Score=257.89 Aligned_cols=267 Identities=20% Similarity=0.179 Sum_probs=155.4
Q ss_pred CEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEcc
Q 002346 67 RVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLS 145 (933)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 145 (933)
+.+.++++.+.+...+...+..+++|++|+|++|.|++.+| .|..+++|++|+|++|.++++++ |..+++|++|+|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34455555555554444445555666666666666666655 56666666666666666665543 6666666666666
Q ss_pred CCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcc
Q 002346 146 DNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLS 225 (933)
Q Consensus 146 ~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~ 225 (933)
+|++.+ ++ ..++|++|++++|++++..+.. +++|++|+|++|++++..+..+..
T Consensus 89 ~n~l~~---l~----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~---------------- 142 (317)
T 3o53_A 89 NNYVQE---LL----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGC---------------- 142 (317)
T ss_dssp SSEEEE---EE----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGG----------------
T ss_pred CCcccc---cc----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhc----------------
Confidence 666554 11 2356666666666666554332 455666666666666444444332
Q ss_pred cccccccCCccCcEEEecCCccCCCCCC-C-CCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCC--
Q 002346 226 GTLDVLSGMTQLRQVWLHKNQFTGPIPD-L-SKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLF-- 301 (933)
Q Consensus 226 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~-~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-- 301 (933)
+++|+.|+|++|++++..+. + ..+++|++|+|++|++++. |. ...+++|++|+|++|++++..+.+
T Consensus 143 --------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~ 212 (317)
T 3o53_A 143 --------RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQS 212 (317)
T ss_dssp --------GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGG
T ss_pred --------cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcc
Confidence 44444555555544443332 2 2344455555555544432 11 122444555555555544433322
Q ss_pred CCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCcccc-
Q 002346 302 PSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLA- 380 (933)
Q Consensus 302 ~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~- 380 (933)
..+|+.|+|++|+|.. +|..+..+++|+.|+|++|.+.
T Consensus 213 l~~L~~L~L~~N~l~~-----------------------------------------l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 213 AAGVTWISLRNNKLVL-----------------------------------------IEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp GTTCSEEECTTSCCCE-----------------------------------------ECTTCCCCTTCCEEECTTCCCBH
T ss_pred cCcccEEECcCCcccc-----------------------------------------hhhHhhcCCCCCEEEccCCCccC
Confidence 2344445555544422 2444566789999999999999
Q ss_pred CcCchhhcCcccCCeEecc-cCcccCCCCcccC
Q 002346 381 GNISPAYANLTSLKNLYLQ-QNNLTGPIPDGLT 412 (933)
Q Consensus 381 g~~p~~~~~l~~L~~L~L~-~N~l~g~~p~~~~ 412 (933)
+.+|..++.+++|+.|+++ .+.+.|..|....
T Consensus 252 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~ 284 (317)
T 3o53_A 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284 (317)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCS
T ss_pred cCHHHHHhccccceEEECCCchhccCCchhccC
Confidence 8899999999999999999 5567877665543
No 319
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=6.7e-27 Score=270.30 Aligned_cols=234 Identities=22% Similarity=0.186 Sum_probs=153.4
Q ss_pred CcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCe
Q 002346 89 LTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTT 167 (933)
Q Consensus 89 l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~ 167 (933)
.++|++|+|++|.|++.+| .|..+++|++|+|++|.|+++++ |..+++|++|+|++|.+.+ +| ..++|+.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~---l~----~~~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE---LL----VGPSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE---EE----ECTTCCE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC---CC----CCCCcCE
Confidence 3366777777777766655 56666677777777777665554 6666677777777766554 22 2266777
Q ss_pred eeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCcc
Q 002346 168 LYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQF 247 (933)
Q Consensus 168 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l 247 (933)
|+|++|.+++..+. .+++|++|+|++|++++..|..+.. +++|+.|+|++|.+
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~------------------------l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC------------------------RSRVQYLDLKLNEI 156 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG------------------------GSSEEEEECTTSCC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC------------------------CCCCCEEECCCCCC
Confidence 77777777666443 3456777777777777555555433 66677777777777
Q ss_pred CCCCCC-CC-CCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCC
Q 002346 248 TGPIPD-LS-KCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKP 325 (933)
Q Consensus 248 ~~~~~~-~~-~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~ 325 (933)
++.+|. +. .+++|+.|+|++|.|++..+ +..+++|+.|+|++|.+++.+|
T Consensus 157 ~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-------------------------- 208 (487)
T 3oja_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-------------------------- 208 (487)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG--------------------------
T ss_pred CCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH--------------------------
Confidence 765543 33 56777777777777775422 3346677777777777665322
Q ss_pred CCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCccc-
Q 002346 326 CDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLT- 404 (933)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~- 404 (933)
.+..+++|+.|+|++|.+++ +|..++.+++|+.|+|++|.+.
T Consensus 209 ------------------------------------~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 209 ------------------------------------EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp ------------------------------------GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred ------------------------------------hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 23344566777777777774 6667778888888888888887
Q ss_pred CCCCcccCCCCCcCEEecc
Q 002346 405 GPIPDGLTKLASLQNLDVS 423 (933)
Q Consensus 405 g~~p~~~~~l~~L~~l~ls 423 (933)
+.+|..+..++.|+.++++
T Consensus 252 ~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 252 GTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHhCCCCcEEecc
Confidence 6777788888888877775
No 320
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.92 E-value=5.8e-26 Score=264.46 Aligned_cols=186 Identities=17% Similarity=0.185 Sum_probs=147.9
Q ss_pred ccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCch------hHHHHHHHHHHHHhcCCCcceeEEeEeeeCceeEEE
Q 002346 584 SEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNK------GLSEFQAEIAVLTKVRHRHLVALLGYCINGSERLLV 657 (933)
Q Consensus 584 ~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 657 (933)
...+.||+|+||.||+|.. .++.+|+|+......... ..+++.+|++++++++||||+++..++...+..++|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 3457899999999999965 678899998655432211 245689999999999999999776666677888999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccC
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
|||+++++|.+++.. +..++.|+++||+|||+ ++|+||||||+|||++. .+||+|||+++..
T Consensus 418 mE~~~ggsL~~~l~~-------------~~~i~~qi~~aL~~LH~---~gIiHrDiKp~NILl~~--~~kL~DFGla~~~ 479 (540)
T 3en9_A 418 MSYINGKLAKDVIED-------------NLDIAYKIGEIVGKLHK---NDVIHNDLTTSNFIFDK--DLYIIDFGLGKIS 479 (540)
T ss_dssp EECCCSEEHHHHSTT-------------CTHHHHHHHHHHHHHHH---TTEECTTCCTTSEEESS--SEEECCCTTCEEC
T ss_pred EECCCCCCHHHHHHH-------------HHHHHHHHHHHHHHHHH---CcCccCCCCHHHEEECC--eEEEEECccCEEC
Confidence 999999999999943 55799999999999999 89999999999999998 9999999999977
Q ss_pred CCCCcee------ecccccccCcccccccCC--CCCCCccchHhHHHHHHHHHcCCCCC
Q 002346 738 PDGKYSV------ETRLAGTFGYLAPEYAAT--GRVTTKIDVYAFGVVLMETITGRKAL 788 (933)
Q Consensus 738 ~~~~~~~------~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~SlG~~l~elltG~~p~ 788 (933)
....... .....||+.|+|||++.. ..|+.++|+|+..+-..+.+.++.+|
T Consensus 480 ~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY 538 (540)
T 3en9_A 480 NLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY 538 (540)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred CCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 6533211 235689999999999976 56888899999999999988887665
No 321
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.5e-24 Score=232.02 Aligned_cols=210 Identities=23% Similarity=0.263 Sum_probs=163.2
Q ss_pred CEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEcc
Q 002346 67 RVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLS 145 (933)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 145 (933)
.++.|+|++|++++..+..|..+++|++|+|++|.|+++.+ .|.++++|++|+|++|.++++++..|.++++|++|+|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 57888888888887666678888888888888888887776 67888888888888888888887778888888888888
Q ss_pred CCCCCCCCCCCccccCCccCCeeeccCcccCCC-CChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCc
Q 002346 146 DNPNLAPWPFPNELTKSTSLTTLYMDNANIFGL-IPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGL 224 (933)
Q Consensus 146 ~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~ 224 (933)
+|++.. ..+..+..+++|++|++++|++.+. +|..|..+++|++|+|++|++++..+..+..
T Consensus 109 ~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------- 171 (276)
T 2z62_A 109 ETNLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV--------------- 171 (276)
T ss_dssp TSCCCC--STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH---------------
T ss_pred CCCccc--cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh---------------
Confidence 888877 3344678888888888888888774 5788888888888888888888555555443
Q ss_pred ccccccccCCccCc-EEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCC
Q 002346 225 SGTLDVLSGMTQLR-QVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYP 299 (933)
Q Consensus 225 ~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 299 (933)
+..++.|. .|++++|++++.++......+|+.|+|++|++++..+..|..+++|+.|+|++|++++..|
T Consensus 172 ------l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 172 ------LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp ------HHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ------hhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 22233333 7888888888877776666688889999888887666677888888888888888886544
No 322
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.1e-24 Score=230.82 Aligned_cols=43 Identities=28% Similarity=0.314 Sum_probs=30.8
Q ss_pred ccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccCCC
Q 002346 391 TSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKVPD 433 (933)
Q Consensus 391 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p~ 433 (933)
.+|+.|+|++|++++..+..|..+++|+.|++++|++++..|.
T Consensus 200 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 3677777777777755555667777788888888887777664
No 323
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=4.6e-28 Score=279.86 Aligned_cols=328 Identities=17% Similarity=0.180 Sum_probs=241.9
Q ss_pred CCEEEEEecCCCCccccCcc-ccCCcccceeeccccccccc----CC-CccCcCcCceeccccccccCCCCCc-ccCCC-
Q 002346 66 NRVTTISLAKSGLSGTLSPE-ISSLTQLETLSFQMNNIAGA----IP-SLANATSLQDIYLDNNNFTSVPTGC-FDGLT- 137 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~----~p-~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~- 137 (933)
.+++.|+|++++++...... +..+++|++|+|++|.+++. ++ .+..+++|++|+|++|.++...... +..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 36899999999997654433 78899999999999999853 33 5788899999999999998643322 23455
Q ss_pred ---CCCEEEccCCCCCCCC--CCCccccCCccCCeeeccCcccCCCCChhhc-----CCCCCCEEEccCCcCCCCCCccc
Q 002346 138 ---NLQVLSLSDNPNLAPW--PFPNELTKSTSLTTLYMDNANIFGLIPDFFD-----SFSNLQNLRLSYNNFTGSLPASF 207 (933)
Q Consensus 138 ---~L~~L~Ls~N~~~~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~~p~~~ 207 (933)
+|++|+|++|++.... .++..+..+++|++|+|++|.+....+..+. ..++|++|+|++|++++.....+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 7999999999988421 3578899999999999999998765454443 36789999999999986543333
Q ss_pred ----cc-cccchhhcccccCCccccccccc----CCccCcEEEecCCccCCC-----CCCCCCCCCCCEEEccCCccccc
Q 002346 208 ----AK-SDIQNLWMNDQQLGLSGTLDVLS----GMTQLRQVWLHKNQFTGP-----IPDLSKCESLFDLSLRDNQLTGV 273 (933)
Q Consensus 208 ----~~-~~l~~l~l~~n~~~~~~~~~~l~----~l~~L~~L~L~~N~l~~~-----~~~~~~~~~L~~L~L~~N~l~~~ 273 (933)
.. ..|++|++++|.+...+...... ..++|+.|+|++|.+++. ...+..+++|+.|+|++|++++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 22 57888888888876544332211 245889999999988863 22366788899999999988754
Q ss_pred C-----cccccCCCCCCEEEccCccCccC----CCCC---CCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccC
Q 002346 274 V-----PASVISLPALLNISLQNNKLQGP----YPLF---PSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMG 341 (933)
Q Consensus 274 ~-----p~~l~~l~~L~~L~Ls~N~l~~~----~p~~---~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (933)
. +..+..+++|++|+|++|.+++. ++.. ..+|+.|+|++|.+..... ..
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-------------~~------ 303 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA-------------RL------ 303 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH-------------HH------
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH-------------HH------
Confidence 3 23334578899999999988863 2221 4578888988887743110 00
Q ss_pred CCccccCCCCCCCCCCCCCcccc-CCCceeEEEccCccccCc----CchhhcCcccCCeEecccCcccCCCCcccCC---
Q 002346 342 YPAILSDSWEGNNACDGWPFVTC-SQGRIITINLANKLLAGN----ISPAYANLTSLKNLYLQQNNLTGPIPDGLTK--- 413 (933)
Q Consensus 342 ~~~~l~~~~~~~~~~~~~p~~~~-~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~--- 413 (933)
+...+. ..++|+.|+|++|.+++. ++..+..+++|+.|+|++|++++..+..+..
T Consensus 304 -----------------l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 366 (461)
T 1z7x_W 304 -----------------LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG 366 (461)
T ss_dssp -----------------HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred -----------------HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc
Confidence 001111 225899999999999976 6777888899999999999998765655543
Q ss_pred --CCCcCEEeccCCcCcc
Q 002346 414 --LASLQNLDVSNNNLSG 429 (933)
Q Consensus 414 --l~~L~~l~ls~N~l~g 429 (933)
.++|+.|++++|++++
T Consensus 367 ~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 367 QPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp STTCCCCEEECTTSCCCH
T ss_pred CCCCceEEEECCCCCCCh
Confidence 7799999999999986
No 324
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.7e-24 Score=230.67 Aligned_cols=229 Identities=21% Similarity=0.245 Sum_probs=170.9
Q ss_pred CcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCee
Q 002346 89 LTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTL 168 (933)
Q Consensus 89 l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L 168 (933)
+.++..+++..+.+.... .+..+++|+.|++++|.++.++. +..+++|++|+|++|.+.. + ..+..+++|++|
T Consensus 18 ~~~l~~l~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~---~-~~l~~l~~L~~L 90 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD---I-SALKELTNLTYL 90 (272)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCC---C-GGGTTCTTCCEE
T ss_pred HHHHHHHHhcCccccccc-ccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCC---c-hhhcCCCCCCEE
Confidence 445556666666666443 35567778888888888776653 6778888888888888776 2 467788888888
Q ss_pred eccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccC
Q 002346 169 YMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFT 248 (933)
Q Consensus 169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~ 248 (933)
+|++|++++..+..|..+++|++|+|++|++++..+..|. ++++|++|+|++|+++
T Consensus 91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------------------------~l~~L~~L~L~~n~l~ 146 (272)
T 3rfs_A 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD------------------------KLTNLTYLNLAHNQLQ 146 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT------------------------TCTTCCEEECCSSCCC
T ss_pred ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc------------------------cCCCCCEEECCCCccC
Confidence 8888888887777788888888888888888855554443 3778888888888888
Q ss_pred CCCCC-CCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCC
Q 002346 249 GPIPD-LSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCD 327 (933)
Q Consensus 249 ~~~~~-~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~ 327 (933)
+.++. +..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|.
T Consensus 147 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------------- 199 (272)
T 3rfs_A 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG--------------------------- 199 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT---------------------------
T ss_pred ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH---------------------------
Confidence 77765 57788888888888888877777778888888888888888764432
Q ss_pred chhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCC
Q 002346 328 PQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPI 407 (933)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~ 407 (933)
.+..+++|+.|+|++|.+.+. +++|+.|+++.|+++|.+
T Consensus 200 ----------------------------------~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 200 ----------------------------------VFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp ----------------------------------TTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGB
T ss_pred ----------------------------------HHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcc
Confidence 233456777777777777654 456888899999999999
Q ss_pred CcccCCCCC
Q 002346 408 PDGLTKLAS 416 (933)
Q Consensus 408 p~~~~~l~~ 416 (933)
|.+++.++.
T Consensus 239 p~~~~~~~~ 247 (272)
T 3rfs_A 239 RNSAGSVAP 247 (272)
T ss_dssp BCTTSCBCG
T ss_pred cCcccccCC
Confidence 998887765
No 325
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.3e-24 Score=229.67 Aligned_cols=225 Identities=19% Similarity=0.206 Sum_probs=191.6
Q ss_pred CcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCC
Q 002346 111 NATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQ 190 (933)
Q Consensus 111 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 190 (933)
.+.++..+++.++.+..+.. +..+++|+.|++++|.+.. + ..+..+++|++|+|++|++.+. ..+..+++|+
T Consensus 17 ~~~~l~~l~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~---~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 88 (272)
T 3rfs_A 17 AFAETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKS---V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLT 88 (272)
T ss_dssp HHHHHHHHHHTCSCTTSEEC--HHHHTTCCEEECTTSCCCC---C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCC
T ss_pred hHHHHHHHHhcCcccccccc--cccccceeeeeeCCCCccc---c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCC
Confidence 34567778888888876643 6788999999999999877 3 4688999999999999999874 4789999999
Q ss_pred EEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCCC-CCCCCCCCEEEccCCc
Q 002346 191 NLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPD-LSKCESLFDLSLRDNQ 269 (933)
Q Consensus 191 ~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~~~~~~L~~L~L~~N~ 269 (933)
+|+|++|++++..+..+. ++++|++|+|++|++++.++. +..+++|++|+|++|+
T Consensus 89 ~L~L~~n~l~~~~~~~~~------------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 144 (272)
T 3rfs_A 89 YLILTGNQLQSLPNGVFD------------------------KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144 (272)
T ss_dssp EEECTTSCCCCCCTTTTT------------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccChhHhc------------------------CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc
Confidence 999999999965555444 489999999999999988876 7899999999999999
Q ss_pred ccccCcccccCCCCCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCC
Q 002346 270 LTGVVPASVISLPALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDS 349 (933)
Q Consensus 270 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (933)
+++..+..+..+++|+.|+|++|++++..+
T Consensus 145 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------------------------------------- 174 (272)
T 3rfs_A 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPE-------------------------------------------------- 174 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------------------------------------------
T ss_pred cCccCHHHhccCccCCEEECCCCCcCccCH--------------------------------------------------
Confidence 998888888999999999999999886433
Q ss_pred CCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcc
Q 002346 350 WEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSG 429 (933)
Q Consensus 350 ~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g 429 (933)
..+..+++|+.|+|++|++++..|..|+.+++|+.|+|++|.+.+. ++.|++|+++.|+++|
T Consensus 175 -----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 175 -----------GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSG 236 (272)
T ss_dssp -----------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGG
T ss_pred -----------HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCC
Confidence 2234567899999999999998888899999999999999998855 4579999999999999
Q ss_pred cCCCCC
Q 002346 430 KVPDFG 435 (933)
Q Consensus 430 ~~p~~~ 435 (933)
.+|...
T Consensus 237 ~ip~~~ 242 (272)
T 3rfs_A 237 VVRNSA 242 (272)
T ss_dssp GBBCTT
T ss_pred cccCcc
Confidence 999743
No 326
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=3.8e-23 Score=222.00 Aligned_cols=202 Identities=22% Similarity=0.224 Sum_probs=173.3
Q ss_pred eCCCCCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCC
Q 002346 62 CDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQ 140 (933)
Q Consensus 62 c~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 140 (933)
|.+-..++.|++++++|+ .+|..+. ++|+.|+|++|.|++..+ .|..+++|++|+|++|.|++++.. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 444457889999999998 5666554 689999999999998877 789999999999999999988764 7899999
Q ss_pred EEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccc
Q 002346 141 VLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQ 220 (933)
Q Consensus 141 ~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n 220 (933)
+|+|++|++.. +|..+..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|
T Consensus 81 ~L~Ls~N~l~~---l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------------- 144 (290)
T 1p9a_G 81 TLDLSHNQLQS---LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL------------- 144 (290)
T ss_dssp EEECCSSCCSS---CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT-------------
T ss_pred EEECCCCcCCc---CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhc-------------
Confidence 99999999986 78888999999999999999999888899999999999999999985444433
Q ss_pred cCCcccccccccCCccCcEEEecCCccCCCCCC-CCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCcc
Q 002346 221 QLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPD-LSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQG 296 (933)
Q Consensus 221 ~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 296 (933)
..+++|+.|+|++|+|++.++. +..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++..
T Consensus 145 -----------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 145 -----------TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp -----------TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred -----------ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 3488999999999999987775 678999999999999999 788888888899999999998874
No 327
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=1.8e-23 Score=218.38 Aligned_cols=202 Identities=14% Similarity=0.151 Sum_probs=158.6
Q ss_pred ccCccccCCcccceeecccccccccCC-CccCcCcCceecccccc-ccCCCCCcccCCCCCCEEEccC-CCCCCCCCCCc
Q 002346 81 TLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNN-FTSVPTGCFDGLTNLQVLSLSD-NPNLAPWPFPN 157 (933)
Q Consensus 81 ~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~~~~~~~~p~ 157 (933)
.+|. +. ++|++|+|++|+|+++++ .|.++++|++|+|++|. ++.+++..|.++++|++|+|++ |++.. ..+.
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~--i~~~ 99 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--IDPD 99 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE--ECTT
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE--cCHH
Confidence 4554 33 378888888888888777 78888888888888886 8888888888888888888888 88877 3346
Q ss_pred cccCCccCCeeeccCcccCCCCChhhcCCCCCC---EEEccCC-cCCCCCCccccccccchhhcccccCCcccccccccC
Q 002346 158 ELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQ---NLRLSYN-NFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSG 233 (933)
Q Consensus 158 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~ 233 (933)
.|.++++|++|++++|++++ +|. |..+++|+ +|+|++| ++++..+..| .+
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~------------------------~~ 153 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF------------------------QG 153 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT------------------------TT
T ss_pred HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc------------------------cc
Confidence 78888888888888888877 455 77888888 8888888 8874444333 34
Q ss_pred CccCc-EEEecCCccCCCCCCCCCCCCCCEEEccCCc-ccccCcccccCC-CCCCEEEccCccCccCCCCCCCCccEEec
Q 002346 234 MTQLR-QVWLHKNQFTGPIPDLSKCESLFDLSLRDNQ-LTGVVPASVISL-PALLNISLQNNKLQGPYPLFPSKVQKVSL 310 (933)
Q Consensus 234 l~~L~-~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l 310 (933)
+++|+ .|+|++|+++..++.....++|+.|+|++|+ +++..+..|..+ ++|+.|+|++|++++..+..+.+++.|++
T Consensus 154 l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l 233 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIA 233 (239)
T ss_dssp TBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEEC
T ss_pred hhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeec
Confidence 78888 8888888888655554444788899999985 886667788888 88999999999988776666778888888
Q ss_pred cCC
Q 002346 311 DHN 313 (933)
Q Consensus 311 ~~n 313 (933)
+++
T Consensus 234 ~~~ 236 (239)
T 2xwt_C 234 RNT 236 (239)
T ss_dssp TTC
T ss_pred cCc
Confidence 765
No 328
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=5.4e-23 Score=220.80 Aligned_cols=204 Identities=20% Similarity=0.198 Sum_probs=138.6
Q ss_pred ccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCcccccccc
Q 002346 133 FDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDI 212 (933)
Q Consensus 133 ~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l 212 (933)
+.++++|+++++++|.++. +|..+. ++|+.|+|++|++.+..+..|..+++|++|+|++|++++ ++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~---ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~------ 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA---LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD------ 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSS---CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC------
T ss_pred ccccCCccEEECCCCCCCc---CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC------
Confidence 3444455555555554444 343332 456666666666666666677777777777777777763 2211
Q ss_pred chhhcccccCCcccccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCc
Q 002346 213 QNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNN 292 (933)
Q Consensus 213 ~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 292 (933)
..+++|+.|+|++|+|+..+..+..+++|+.|+|++|+|++..|..|..+++|++|+|++|
T Consensus 74 -------------------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 74 -------------------GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp -------------------SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred -------------------CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 1366777777777777765555677777777777777777666677777777777777777
Q ss_pred cCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEE
Q 002346 293 KLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITI 372 (933)
Q Consensus 293 ~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L 372 (933)
++++..+ ..+..+++|+.|
T Consensus 135 ~l~~~~~-------------------------------------------------------------~~~~~l~~L~~L 153 (290)
T 1p9a_G 135 ELKTLPP-------------------------------------------------------------GLLTPTPKLEKL 153 (290)
T ss_dssp CCCCCCT-------------------------------------------------------------TTTTTCTTCCEE
T ss_pred CCCccCh-------------------------------------------------------------hhcccccCCCEE
Confidence 7764332 122344667777
Q ss_pred EccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcc
Q 002346 373 NLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSG 429 (933)
Q Consensus 373 ~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g 429 (933)
+|++|+|++..+..|.++++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++..
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 77777777655566788899999999999998 788888888889999888887754
No 329
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.3e-22 Score=215.81 Aligned_cols=138 Identities=25% Similarity=0.287 Sum_probs=90.7
Q ss_pred CccCcEEEecCCccCCCCCC-CCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCCCCCccEEeccC
Q 002346 234 MTQLRQVWLHKNQFTGPIPD-LSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSKVQKVSLDH 312 (933)
Q Consensus 234 l~~L~~L~L~~N~l~~~~~~-~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~ 312 (933)
+++|++|+|++|++++.++. +..+++|+.|+|++|++++..+..|..+++|++|+|++|.+++..+
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------- 150 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK------------- 150 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-------------
Confidence 45555555555555544443 4555566666666666665555556666666666666666553222
Q ss_pred CcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCccc
Q 002346 313 NNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTS 392 (933)
Q Consensus 313 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~ 392 (933)
..+..+++|+.|+|++|++++..+..|.++++
T Consensus 151 ------------------------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 151 ------------------------------------------------GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182 (270)
T ss_dssp ------------------------------------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred ------------------------------------------------hHccCCcccceeEecCCcCcEeChhHhccCCC
Confidence 11233456666666666666656667888899
Q ss_pred CCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcccCC
Q 002346 393 LKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSGKVP 432 (933)
Q Consensus 393 L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g~~p 432 (933)
|+.|+|++|++++..+..|..+++|+.|+|++|++.+..+
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 9999999999997667778889999999999998876554
No 330
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=4.7e-23 Score=216.78 Aligned_cols=141 Identities=25% Similarity=0.377 Sum_probs=92.0
Q ss_pred CCccccceEeCCCCCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCC
Q 002346 53 GYCEWTGINCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTG 131 (933)
Q Consensus 53 ~~C~w~gv~c~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~ 131 (933)
+||.|.|++|.. ..+.+++++++++ .+|..+. ++|+.|+|++|.|++..+ .|.++++|++|+|++|.|+++++.
T Consensus 3 ~Cp~~~gC~C~~--~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 77 (251)
T 3m19_A 3 TCETVTGCTCNE--GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77 (251)
T ss_dssp -CHHHHSSEEEG--GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred cCCCCCceEcCC--CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHh
Confidence 478999999953 3457888888887 5665554 577777777777777766 577777777777777777777766
Q ss_pred cccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCC
Q 002346 132 CFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFT 200 (933)
Q Consensus 132 ~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 200 (933)
.|.++++|++|+|++|++.. ..+..+..+++|++|+|++|+|++..+..|..+++|++|+|++|+|+
T Consensus 78 ~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLAS--LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred HhccCCcCCEEECCCCcccc--cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence 66666666666666666655 23344455555555555555555554444555555555555555554
No 331
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.6e-23 Score=227.78 Aligned_cols=203 Identities=17% Similarity=0.147 Sum_probs=121.3
Q ss_pred CCCCEEEccCCCCCCCCCCCccc--cCCccCCeeeccCcccCCCCC----hhhcCCCCCCEEEccCCcCCCCCCcccccc
Q 002346 137 TNLQVLSLSDNPNLAPWPFPNEL--TKSTSLTTLYMDNANIFGLIP----DFFDSFSNLQNLRLSYNNFTGSLPASFAKS 210 (933)
Q Consensus 137 ~~L~~L~Ls~N~~~~~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 210 (933)
++|++|+|++|.+.+ ..|..+ ..+++|++|+|++|.+.+..+ ..+..+++|++|+|++|++++..|..+..
T Consensus 91 ~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~- 167 (310)
T 4glp_A 91 SRLKELTLEDLKITG--TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA- 167 (310)
T ss_dssp SCCCEEEEESCCCBS--CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC-
T ss_pred CceeEEEeeCCEecc--chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc-
Confidence 345555555555544 334444 555555555555555555433 23345666666666666665444444332
Q ss_pred ccchhhcccccCCcccccccccCCccCcEEEecCCccCC---CCCC--CCCCCCCCEEEccCCcccccCcc----cccCC
Q 002346 211 DIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTG---PIPD--LSKCESLFDLSLRDNQLTGVVPA----SVISL 281 (933)
Q Consensus 211 ~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~---~~~~--~~~~~~L~~L~L~~N~l~~~~p~----~l~~l 281 (933)
+++|++|+|++|++.+ ..+. +..+++|++|+|++|+++ .++. .+..+
T Consensus 168 -----------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l 223 (310)
T 4glp_A 168 -----------------------FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG 223 (310)
T ss_dssp -----------------------CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred -----------------------CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence 5666666666666544 2211 356677777777777776 2222 24566
Q ss_pred CCCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCc
Q 002346 282 PALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPF 361 (933)
Q Consensus 282 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~ 361 (933)
++|++|+|++|++++..|..+..
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~--------------------------------------------------------- 246 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPR--------------------------------------------------------- 246 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSS---------------------------------------------------------
T ss_pred CCCCEEECCCCCCCccchhhHHh---------------------------------------------------------
Confidence 77777777777777654421110
Q ss_pred cccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCcc
Q 002346 362 VTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLSG 429 (933)
Q Consensus 362 ~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~g 429 (933)
...+++|+.|+|++|+++ .+|..+. ++|+.|+|++|+|++. |. +..+++|+.|+|++|+|+.
T Consensus 247 -~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 247 -CMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -CCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred -ccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 001246677777777777 5666554 6888888888888853 43 6777888888888888864
No 332
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.2e-24 Score=242.35 Aligned_cols=259 Identities=17% Similarity=0.247 Sum_probs=142.9
Q ss_pred eecccccccccCCCccCc-CcCceeccccccccCCCC----CcccCCC-CCCEEEccCCCCCCCCCCCccccCC-----c
Q 002346 95 LSFQMNNIAGAIPSLANA-TSLQDIYLDNNNFTSVPT----GCFDGLT-NLQVLSLSDNPNLAPWPFPNELTKS-----T 163 (933)
Q Consensus 95 L~l~~N~l~~~~p~~~~l-~~L~~L~Ls~N~l~~~~~----~~~~~l~-~L~~L~Ls~N~~~~~~~~p~~~~~l-----~ 163 (933)
++|+.|.++|.+|.+... ++|++|+|++|.|+.++. ..|..++ +|++|+|++|++.. ..+..+..+ +
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF--KNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG--SCHHHHHHHHHTSCT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH--HHHHHHHHHHhccCC
Confidence 345555555555533222 235555555555555554 4455555 55555555555554 223344433 5
Q ss_pred cCCeeeccCcccCCCCChhhc----CC-CCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCC-ccC
Q 002346 164 SLTTLYMDNANIFGLIPDFFD----SF-SNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGM-TQL 237 (933)
Q Consensus 164 ~L~~L~L~~n~l~~~~p~~~~----~l-~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l-~~L 237 (933)
+|++|+|++|.+++..+..+. .+ ++|++|+|++|++++..+..++. .+..+ ++|
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L 140 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASI 140 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTC
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCce
Confidence 666666666666655554333 23 56666666666666444433322 12222 466
Q ss_pred cEEEecCCccCCCCCC-----CCCCC-CCCEEEccCCcccccCccccc----CC-CCCCEEEccCccCccCCCCCCCCcc
Q 002346 238 RQVWLHKNQFTGPIPD-----LSKCE-SLFDLSLRDNQLTGVVPASVI----SL-PALLNISLQNNKLQGPYPLFPSKVQ 306 (933)
Q Consensus 238 ~~L~L~~N~l~~~~~~-----~~~~~-~L~~L~L~~N~l~~~~p~~l~----~l-~~L~~L~Ls~N~l~~~~p~~~~~l~ 306 (933)
++|+|++|++++.... +..++ +|+.|+|++|++++..+..+. .+ ++|++|+|++|.+++...
T Consensus 141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~------- 213 (362)
T 3goz_A 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY------- 213 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-------
T ss_pred eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH-------
Confidence 6666666666643221 23333 667777777777655554333 23 466667776666664211
Q ss_pred EEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccC-CCceeEEEccCccccCcCc-
Q 002346 307 KVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCS-QGRIITINLANKLLAGNIS- 384 (933)
Q Consensus 307 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~L~~L~Ls~N~l~g~~p- 384 (933)
..++..+.. .++|+.|+|++|.+++..+
T Consensus 214 --------------------------------------------------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 214 --------------------------------------------------AELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp --------------------------------------------------HHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred --------------------------------------------------HHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence 011222222 2366777777777766544
Q ss_pred ---hhhcCcccCCeEecccCcccCC-------CCcccCCCCCcCEEeccCCcCcccCC
Q 002346 385 ---PAYANLTSLKNLYLQQNNLTGP-------IPDGLTKLASLQNLDVSNNNLSGKVP 432 (933)
Q Consensus 385 ---~~~~~l~~L~~L~L~~N~l~g~-------~p~~~~~l~~L~~l~ls~N~l~g~~p 432 (933)
..+..+++|+.|+|++|++.+. ++..+..+++|+.||+++|++....+
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 3446678888888888885533 33467778888888888888876643
No 333
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=8.1e-23 Score=222.29 Aligned_cols=225 Identities=21% Similarity=0.268 Sum_probs=163.5
Q ss_pred CEEEEEecCCCCccccCc---cccCCcccceeecccccccccCC-Cc--cCcCcCceeccccccccCCCC----CcccCC
Q 002346 67 RVTTISLAKSGLSGTLSP---EISSLTQLETLSFQMNNIAGAIP-SL--ANATSLQDIYLDNNNFTSVPT----GCFDGL 136 (933)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~---~~~~l~~L~~L~l~~N~l~~~~p-~~--~~l~~L~~L~Ls~N~l~~~~~----~~~~~l 136 (933)
+++.+.+.+..++...-. .+..+++|++|+|++|.+++.+| .+ ..+++|++|+|++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 567788887777532111 12235668889999888888777 55 788889999999988886433 334578
Q ss_pred CCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCC---C-ChhhcCCCCCCEEEccCCcCCCCCCcccccccc
Q 002346 137 TNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGL---I-PDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDI 212 (933)
Q Consensus 137 ~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l 212 (933)
++|++|+|++|++.. ..+..+..+++|++|+|++|++.+. . +..++.+++|++|+|++|+++ .++.....
T Consensus 145 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~--- 218 (310)
T 4glp_A 145 PGLKVLSIAQAHSPA--FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAA--- 218 (310)
T ss_dssp SCCCEEEEECCSSCC--CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHH---
T ss_pred cCCCEEEeeCCCcch--hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHH---
Confidence 889999999888877 4567888888899999998887652 1 233467888899999998886 33322100
Q ss_pred chhhcccccCCcccccccccCCccCcEEEecCCccCCCCC-CCCCC---CCCCEEEccCCcccccCcccccCCCCCCEEE
Q 002346 213 QNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIP-DLSKC---ESLFDLSLRDNQLTGVVPASVISLPALLNIS 288 (933)
Q Consensus 213 ~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~---~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 288 (933)
.+..+++|++|+|++|++++..| .+..+ ++|++|+|++|+|+ .+|..+. ++|+.|+
T Consensus 219 -----------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~ 278 (310)
T 4glp_A 219 -----------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLD 278 (310)
T ss_dssp -----------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEE
T ss_pred -----------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEE
Confidence 12347888888888888888744 45554 68888888888888 6777664 7888888
Q ss_pred ccCccCcc-CCCCCCCCccEEeccCCcCCC
Q 002346 289 LQNNKLQG-PYPLFPSKVQKVSLDHNNFCK 317 (933)
Q Consensus 289 Ls~N~l~~-~~p~~~~~l~~L~l~~n~~~~ 317 (933)
|++|++++ ..+..+.+|+.|+|++|.|..
T Consensus 279 Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 279 LSSNRLNRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred CCCCcCCCCchhhhCCCccEEECcCCCCCC
Confidence 88888887 445556788888888888754
No 334
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.5e-24 Score=239.13 Aligned_cols=211 Identities=20% Similarity=0.265 Sum_probs=139.0
Q ss_pred CCccccceEeCCCCCEEEEEecCCCCccccCccccCC--cccceeecccccccccCCCccCcCcCceeccccccccCC-C
Q 002346 53 GYCEWTGINCDNSNRVTTISLAKSGLSGTLSPEISSL--TQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSV-P 129 (933)
Q Consensus 53 ~~C~w~gv~c~~~~~v~~L~l~~~~l~~~~~~~~~~l--~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~-~ 129 (933)
.|..|.++.|+. ..++.|+++++++. +..+..+ +.++.|++++|.+++.++.+..+++|++|+|++|.++.. .
T Consensus 35 vc~~W~~~~~~~-~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 110 (336)
T 2ast_B 35 VCKRWYRLASDE-SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 110 (336)
T ss_dssp SCHHHHHHHTCS-TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHH
T ss_pred HHHHHHHHhcCc-hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHH
Confidence 445799998863 46789999998876 4566666 889999999999988888777888888888888888753 3
Q ss_pred CCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCc-ccCC-CCChhhcCCCCCCEEEccCC-cCCCC-CCc
Q 002346 130 TGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNA-NIFG-LIPDFFDSFSNLQNLRLSYN-NFTGS-LPA 205 (933)
Q Consensus 130 ~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n-~l~~-~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~ 205 (933)
+..+..+++|++|+|++|.+.. ..+..+..+++|++|+|++| .+++ .++..+..+++|++|+|++| .+++. ++.
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~--~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCH--HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHhhCCCCCEEeCcCcccCH--HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 3446777777777777777664 34556666777777777777 4554 24555666777777777777 66532 232
Q ss_pred cccccccchhhcccccCCcccccccccCCc-cCcEEEecCCc--cC-CCCC-CCCCCCCCCEEEccCCc-ccccCccccc
Q 002346 206 SFAKSDIQNLWMNDQQLGLSGTLDVLSGMT-QLRQVWLHKNQ--FT-GPIP-DLSKCESLFDLSLRDNQ-LTGVVPASVI 279 (933)
Q Consensus 206 ~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~-~L~~L~L~~N~--l~-~~~~-~~~~~~~L~~L~L~~N~-l~~~~p~~l~ 279 (933)
.+. .++ +|+.|+|++|. ++ +.++ .+..+++|+.|+|++|. +++..+..+.
T Consensus 189 ~~~------------------------~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 189 AVA------------------------HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp HHH------------------------HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred HHH------------------------hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 222 255 66666666663 32 1112 24455566666666665 4545555555
Q ss_pred CCCCCCEEEccCcc
Q 002346 280 SLPALLNISLQNNK 293 (933)
Q Consensus 280 ~l~~L~~L~Ls~N~ 293 (933)
.+++|+.|+|++|.
T Consensus 245 ~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 245 QLNYLQHLSLSRCY 258 (336)
T ss_dssp GCTTCCEEECTTCT
T ss_pred CCCCCCEeeCCCCC
Confidence 55555555555553
No 335
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=4.2e-24 Score=237.84 Aligned_cols=208 Identities=19% Similarity=0.187 Sum_probs=165.7
Q ss_pred EEEecCCCCccccCccccCCcccceeecccccccccCC-----CccCcC-cCceeccccccccCCCCCcccCC-----CC
Q 002346 70 TISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-----SLANAT-SLQDIYLDNNNFTSVPTGCFDGL-----TN 138 (933)
Q Consensus 70 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-----~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l-----~~ 138 (933)
...+++++++|.+|..+...++|++|+|++|.|++..+ .+..++ +|++|+|++|.|+......|..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46789999999999888888889999999999998764 467788 89999999999999887777775 99
Q ss_pred CCEEEccCCCCCCCCCCCcc----ccCC-ccCCeeeccCcccCCCCChhhc----C-CCCCCEEEccCCcCCCCCCcccc
Q 002346 139 LQVLSLSDNPNLAPWPFPNE----LTKS-TSLTTLYMDNANIFGLIPDFFD----S-FSNLQNLRLSYNNFTGSLPASFA 208 (933)
Q Consensus 139 L~~L~Ls~N~~~~~~~~p~~----~~~l-~~L~~L~L~~n~l~~~~p~~~~----~-l~~L~~L~L~~N~l~~~~p~~~~ 208 (933)
|++|+|++|++.. ..+.. +..+ ++|++|+|++|++++..+..+. . .++|++|+|++|++++..+..+.
T Consensus 82 L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 82 VTSLNLSGNFLSY--KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp CCEEECCSSCGGG--SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred ccEEECcCCcCCh--HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 9999999999887 33443 4444 8999999999999988776654 3 36999999999999965555443
Q ss_pred ccccchhhcccccCCcccccccccCCc-cCcEEEecCCccCCCCCC-----CCCC-CCCCEEEccCCccccc----Cccc
Q 002346 209 KSDIQNLWMNDQQLGLSGTLDVLSGMT-QLRQVWLHKNQFTGPIPD-----LSKC-ESLFDLSLRDNQLTGV----VPAS 277 (933)
Q Consensus 209 ~~~l~~l~l~~n~~~~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~-----~~~~-~~L~~L~L~~N~l~~~----~p~~ 277 (933)
. .+..++ +|++|+|++|++++..+. +..+ ++|+.|+|++|+|++. ++..
T Consensus 160 ~--------------------~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~ 219 (362)
T 3goz_A 160 Q--------------------ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219 (362)
T ss_dssp H--------------------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred H--------------------HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH
Confidence 2 223344 899999999999876652 4445 5999999999999863 5556
Q ss_pred ccCC-CCCCEEEccCccCccCCC
Q 002346 278 VISL-PALLNISLQNNKLQGPYP 299 (933)
Q Consensus 278 l~~l-~~L~~L~Ls~N~l~~~~p 299 (933)
+..+ ++|++|+|++|.+++..+
T Consensus 220 l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HHHSCTTCCEEECCSSCCCCCCH
T ss_pred HhcCCCCceEEECcCCCCCcHHH
Confidence 6653 589999999999886543
No 336
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.7e-22 Score=217.63 Aligned_cols=215 Identities=19% Similarity=0.260 Sum_probs=116.7
Q ss_pred cceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeecc
Q 002346 92 LETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMD 171 (933)
Q Consensus 92 L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~ 171 (933)
+..+.+..+.+++.+ .+..+++|++|++++|.++.++ .+..+++|++|+|++|++.. ++. +..+++|++|+|+
T Consensus 21 ~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~---~~~-~~~l~~L~~L~L~ 93 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITD---LAP-LKNLTKITELELS 93 (308)
T ss_dssp HHHHHTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC---CGG-GTTCCSCCEEECC
T ss_pred HHHHHhCCCCcCcee-cHHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCC---Chh-HccCCCCCEEEcc
Confidence 334445555555432 2444566666666666666654 25556666666666665555 233 5555555555555
Q ss_pred CcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCC
Q 002346 172 NANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPI 251 (933)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 251 (933)
+|++.+. ..+..+++|++|+|++|+++ +..
T Consensus 94 ~n~l~~~--~~~~~l~~L~~L~l~~n~l~------------------------------------------------~~~ 123 (308)
T 1h6u_A 94 GNPLKNV--SAIAGLQSIKTLDLTSTQIT------------------------------------------------DVT 123 (308)
T ss_dssp SCCCSCC--GGGTTCTTCCEEECTTSCCC------------------------------------------------CCG
T ss_pred CCcCCCc--hhhcCCCCCCEEECCCCCCC------------------------------------------------Cch
Confidence 5555443 23555555555555555554 322
Q ss_pred CCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchhh
Q 002346 252 PDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVT 331 (933)
Q Consensus 252 ~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~ 331 (933)
.+..+++|+.|+|++|++++..+ +..+++|+.|+|++|.+++..+
T Consensus 124 -~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-------------------------------- 168 (308)
T 1h6u_A 124 -PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-------------------------------- 168 (308)
T ss_dssp -GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--------------------------------
T ss_pred -hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--------------------------------
Confidence 24444444444444444443222 4444555555555554442110
Q ss_pred hhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCccc
Q 002346 332 TLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGL 411 (933)
Q Consensus 332 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 411 (933)
+..+++|+.|+|++|++++..+ +..+++|+.|+|++|++++..| +
T Consensus 169 -------------------------------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l 213 (308)
T 1h6u_A 169 -------------------------------LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--L 213 (308)
T ss_dssp -------------------------------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--G
T ss_pred -------------------------------hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--c
Confidence 2223445555555555554332 6677788888888888875443 7
Q ss_pred CCCCCcCEEeccCCcCcccCCC
Q 002346 412 TKLASLQNLDVSNNNLSGKVPD 433 (933)
Q Consensus 412 ~~l~~L~~l~ls~N~l~g~~p~ 433 (933)
..+++|+.|++++|++++....
T Consensus 214 ~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 214 ANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp TTCTTCCEEEEEEEEEECCCEE
T ss_pred cCCCCCCEEEccCCeeecCCee
Confidence 7788888888888888764443
No 337
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=5.8e-22 Score=206.82 Aligned_cols=196 Identities=19% Similarity=0.222 Sum_probs=120.5
Q ss_pred cCceeccccccccCCCCCcccCCCCCCEEEccCCC-CCCCCCCCccccCCccCCeeeccC-cccCCCCChhhcCCCCCCE
Q 002346 114 SLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNP-NLAPWPFPNELTKSTSLTTLYMDN-ANIFGLIPDFFDSFSNLQN 191 (933)
Q Consensus 114 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-~~~~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~ 191 (933)
+|++|+|++|+|+++++..|.++++|++|+|++|+ +.. ..+..|.++++|++|+|++ |++++..+..|..
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~--i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~------ 103 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ--LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE------ 103 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE--ECTTTEESCTTCCEEEEEEETTCCEECTTSEEC------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce--eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC------
Confidence 66666666666666666666666666666666664 443 1222444444444444444 4444444444444
Q ss_pred EEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCCCCCCCCCCC---EEEccCC
Q 002346 192 LRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLF---DLSLRDN 268 (933)
Q Consensus 192 L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~---~L~L~~N 268 (933)
+++|+.|+|++|++++. |.+..+++|+ .|++++|
T Consensus 104 ------------------------------------------l~~L~~L~l~~n~l~~l-p~~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 104 ------------------------------------------LPLLKFLGIFNTGLKMF-PDLTKVYSTDIFFILEITDN 140 (239)
T ss_dssp ------------------------------------------CTTCCEEEEEEECCCSC-CCCTTCCBCCSEEEEEEESC
T ss_pred ------------------------------------------CCCCCEEeCCCCCCccc-cccccccccccccEEECCCC
Confidence 44555555555555542 2244555555 6666666
Q ss_pred -cccccCcccccCCCCCC-EEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccc
Q 002346 269 -QLTGVVPASVISLPALL-NISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAIL 346 (933)
Q Consensus 269 -~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 346 (933)
++++..+..|..+++|+ .|++++|+++...+
T Consensus 141 ~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~----------------------------------------------- 173 (239)
T 2xwt_C 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG----------------------------------------------- 173 (239)
T ss_dssp TTCCEECTTTTTTTBSSEEEEECCSCCCCEECT-----------------------------------------------
T ss_pred cchhhcCcccccchhcceeEEEcCCCCCcccCH-----------------------------------------------
Confidence 66655555677777777 77777777662211
Q ss_pred cCCCCCCCCCCCCCccccCCCceeEEEccCcc-ccCcCchhhcCc-ccCCeEecccCcccCCCCcccCCCCCcCEEeccC
Q 002346 347 SDSWEGNNACDGWPFVTCSQGRIITINLANKL-LAGNISPAYANL-TSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSN 424 (933)
Q Consensus 347 ~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l-~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~ 424 (933)
.....++|+.|+|++|+ +++..+..|.++ ++|+.|+|++|+++ .+|.. .+++|+.|++++
T Consensus 174 ---------------~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 174 ---------------YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARN 235 (239)
T ss_dssp ---------------TTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTT
T ss_pred ---------------hhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccC
Confidence 11112467888888884 776666778888 99999999999998 55554 677889999887
Q ss_pred C
Q 002346 425 N 425 (933)
Q Consensus 425 N 425 (933)
+
T Consensus 236 ~ 236 (239)
T 2xwt_C 236 T 236 (239)
T ss_dssp C
T ss_pred c
Confidence 6
No 338
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.6e-21 Score=203.45 Aligned_cols=180 Identities=23% Similarity=0.294 Sum_probs=159.6
Q ss_pred cccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeee
Q 002346 90 TQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLY 169 (933)
Q Consensus 90 ~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~ 169 (933)
...++++++++.++.+++.+. ++|++|+|++|+++++++..|.++++|++|+|++|++.. ..+..+.++++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT--LSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc--cCHhHhccCCcCCEEE
Confidence 467889999999997766665 689999999999999999999999999999999999988 5667789999999999
Q ss_pred ccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCC
Q 002346 170 MDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTG 249 (933)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~ 249 (933)
|++|++++..+..|..+++|++|+|++|+|++..+..|. ++++|+.|+|++|+|++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------------------------~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD------------------------RLTKLKELRLNTNQLQS 145 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT------------------------TCTTCCEEECCSSCCCC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhc------------------------cCCcccEEECcCCcCCc
Confidence 999999999889999999999999999999954444433 48999999999999998
Q ss_pred CCC-CCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccC
Q 002346 250 PIP-DLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGP 297 (933)
Q Consensus 250 ~~~-~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 297 (933)
.++ .+..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++.+.
T Consensus 146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 888 488999999999999999988888899999999999999999864
No 339
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.87 E-value=1.4e-22 Score=216.04 Aligned_cols=155 Identities=14% Similarity=0.076 Sum_probs=122.7
Q ss_pred HHHHHHhcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCc----------------hhHHHHHHHHHHHHhcC
Q 002346 574 EVLRQVTDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGN----------------KGLSEFQAEIAVLTKVR 637 (933)
Q Consensus 574 ~~l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~----------------~~~~~~~~E~~~l~~l~ 637 (933)
..+..-...|.+.+.||+|+||.||+|...+|+.||||+++...... .....+.+|+.++++++
T Consensus 83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~ 162 (282)
T 1zar_A 83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ 162 (282)
T ss_dssp HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence 34444456777889999999999999987789999999997543211 13567899999999999
Q ss_pred CCcceeEEeEeeeCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCc
Q 002346 638 HRHLVALLGYCINGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSN 717 (933)
Q Consensus 638 h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~N 717 (933)
| +++.+++.. +..++||||+++++|.+ +.. .+...++.|+++||+|||+ ++|+||||||+|
T Consensus 163 --~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~-----------~~~~~i~~qi~~~l~~lH~---~giiHrDlkp~N 223 (282)
T 1zar_A 163 --G-LAVPKVYAW-EGNAVLMELIDAKELYR-VRV-----------ENPDEVLDMILEEVAKFYH---RGIVHGDLSQYN 223 (282)
T ss_dssp --T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC-----------SCHHHHHHHHHHHHHHHHH---TTEECSCCSTTS
T ss_pred --C-CCcCeEEec-cceEEEEEecCCCcHHH-cch-----------hhHHHHHHHHHHHHHHHHH---CCCEeCCCCHHH
Confidence 4 666665533 55699999999999988 421 1244699999999999998 899999999999
Q ss_pred EEecCCCcEEEecccccccCCCCCceeecccccccCcccccccCC
Q 002346 718 ILIGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAAT 762 (933)
Q Consensus 718 ill~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 762 (933)
||++ ++.+||+|||+++. +..|+|||++..
T Consensus 224 ILl~-~~~vkl~DFG~a~~--------------~~~~~a~e~l~r 253 (282)
T 1zar_A 224 VLVS-EEGIWIIDFPQSVE--------------VGEEGWREILER 253 (282)
T ss_dssp EEEE-TTEEEECCCTTCEE--------------TTSTTHHHHHHH
T ss_pred EEEE-CCcEEEEECCCCeE--------------CCCCCHHHHHHH
Confidence 9999 99999999999863 345789998753
No 340
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2e-24 Score=242.90 Aligned_cols=205 Identities=19% Similarity=0.260 Sum_probs=131.5
Q ss_pred cCCccCCeeeccCcccCC----CCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCc
Q 002346 160 TKSTSLTTLYMDNANIFG----LIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMT 235 (933)
Q Consensus 160 ~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~ 235 (933)
..+++|++|+|++|.+.. .+|..+..+++|++|+|++|.+++..+..+... +..+ ..+.+ -...+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~l--~~~~~--------~~~~~ 159 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA-LQEL--AVNKK--------AKNAP 159 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH-HHHH--HHHHH--------HHTCC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH-HHHH--hhhhh--------cccCC
Confidence 566677777777777766 356667777777777777777764333333320 0000 00000 00016
Q ss_pred cCcEEEecCCccC-CCCC----CCCCCCCCCEEEccCCccc--c---cCcccccCCCCCCEEEccCccCccCCCCCCCCc
Q 002346 236 QLRQVWLHKNQFT-GPIP----DLSKCESLFDLSLRDNQLT--G---VVPASVISLPALLNISLQNNKLQGPYPLFPSKV 305 (933)
Q Consensus 236 ~L~~L~L~~N~l~-~~~~----~~~~~~~L~~L~L~~N~l~--~---~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 305 (933)
+|+.|+|++|+++ +.++ .+..+++|+.|+|++|+++ | ..|..+..+++|+.|+|++|.++...
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g------- 232 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG------- 232 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------
Confidence 7777777777776 2333 2456677777777777776 2 34446677777777777777765210
Q ss_pred cEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCc---
Q 002346 306 QKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGN--- 382 (933)
Q Consensus 306 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~--- 382 (933)
...+|..+..+++|+.|+|++|.+++.
T Consensus 233 --------------------------------------------------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 233 --------------------------------------------------SSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp --------------------------------------------------HHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred --------------------------------------------------HHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 001233455566777888888887765
Q ss_pred -Cchhh--cCcccCCeEecccCcccC----CCCccc-CCCCCcCEEeccCCcCcccCC
Q 002346 383 -ISPAY--ANLTSLKNLYLQQNNLTG----PIPDGL-TKLASLQNLDVSNNNLSGKVP 432 (933)
Q Consensus 383 -~p~~~--~~l~~L~~L~L~~N~l~g----~~p~~~-~~l~~L~~l~ls~N~l~g~~p 432 (933)
+|..+ +.+++|+.|+|++|++++ .+|..+ .++++|++|++++|++++..+
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 56666 448999999999999997 488877 668999999999999987654
No 341
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=8.7e-22 Score=200.75 Aligned_cols=188 Identities=29% Similarity=0.430 Sum_probs=146.9
Q ss_pred CCCCCccccceEeCCCCCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCC
Q 002346 50 SSTGYCEWTGINCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSV 128 (933)
Q Consensus 50 ~~~~~C~w~gv~c~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~ 128 (933)
+..+.|.|.+|.|.. ++++ .+|..+ .++|++|++++|+|+++++ .|..+++|++|+|++|+|+++
T Consensus 2 p~~C~C~~~~v~c~~-----------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 67 (208)
T 2o6s_A 2 PSRCSCSGTTVECYS-----------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67 (208)
T ss_dssp CTTCEEETTEEECCS-----------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred cCCCEECCCEEEecC-----------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc
Confidence 345679999999975 3344 344433 4589999999999998777 578899999999999999999
Q ss_pred CCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCcccc
Q 002346 129 PTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFA 208 (933)
Q Consensus 129 ~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 208 (933)
++..|..+++|++|+|++|++.. ..+..+.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+.
T Consensus 68 ~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 145 (208)
T 2o6s_A 68 PNGVFNKLTSLTYLNLSTNQLQS--LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ChhhcCCCCCcCEEECCCCcCCc--cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhc
Confidence 88888899999999999998887 3445578888888888888888888777788888888888888888854443333
Q ss_pred ccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCC
Q 002346 209 KSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPA 283 (933)
Q Consensus 209 ~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~ 283 (933)
.+++|+.|+|++|.+.+ .+++|+.|+++.|+++|.+|.+++.++.
T Consensus 146 ------------------------~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 146 ------------------------RLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------------------------TCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------------------------cCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 37788888888887764 3456777888888888888877776654
No 342
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.1e-21 Score=217.11 Aligned_cols=221 Identities=15% Similarity=0.170 Sum_probs=172.2
Q ss_pred CCccccceEeCCCCCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccC-CCC
Q 002346 53 GYCEWTGINCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTS-VPT 130 (933)
Q Consensus 53 ~~C~w~gv~c~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~-~~~ 130 (933)
|.|+|..|.|+ +++|+ .+|..+ .+++++|+|++|+|+.+++ .|.++++|++|+|++|++.+ ++.
T Consensus 7 C~C~~~~v~C~-----------~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~ 72 (350)
T 4ay9_X 7 CHCSNRVFLCQ-----------ESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 72 (350)
T ss_dssp SEEETTEEEEE-----------STTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT
T ss_pred cEeeCCEEEec-----------CCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh
Confidence 45777777774 45666 566655 3689999999999998877 68999999999999999854 778
Q ss_pred CcccCCCCCCE-EEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccC-CcCCCCCCcccc
Q 002346 131 GCFDGLTNLQV-LSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSY-NNFTGSLPASFA 208 (933)
Q Consensus 131 ~~~~~l~~L~~-L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~ 208 (933)
.+|.++++|++ +.++.|++.. ..|..|..+++|++|++++|++.+..+..+....++..|++.+ |++. .+|...
T Consensus 73 ~~f~~L~~l~~~l~~~~N~l~~--l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~- 148 (350)
T 4ay9_X 73 DVFSNLPKLHEIRIEKANNLLY--INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNS- 148 (350)
T ss_dssp TSBCSCTTCCEEEEEEETTCCE--ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTS-
T ss_pred hHhhcchhhhhhhcccCCcccc--cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccc-
Confidence 88999988775 5667788887 4567889999999999999999888887888888888999976 5565 444321
Q ss_pred ccccchhhcccccCCcccccccccCC-ccCcEEEecCCccCCCCCCCCCCCCCCEEEccC-CcccccCcccccCCCCCCE
Q 002346 209 KSDIQNLWMNDQQLGLSGTLDVLSGM-TQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRD-NQLTGVVPASVISLPALLN 286 (933)
Q Consensus 209 ~~~l~~l~l~~n~~~~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~ 286 (933)
|.++ ..++.|+|++|+|+.+.+......+|+.|++++ |.++...+..|..+++|++
T Consensus 149 ----------------------f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~ 206 (350)
T 4ay9_X 149 ----------------------FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206 (350)
T ss_dssp ----------------------STTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSE
T ss_pred ----------------------hhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccch
Confidence 2224 468899999999998888777788999999985 6666444467899999999
Q ss_pred EEccCccCccCCCCCCCCccEEeccCC
Q 002346 287 ISLQNNKLQGPYPLFPSKVQKVSLDHN 313 (933)
Q Consensus 287 L~Ls~N~l~~~~p~~~~~l~~L~l~~n 313 (933)
|+|++|+|+..++..+..++.|.+.++
T Consensus 207 LdLs~N~l~~lp~~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 207 LDISRTRIHSLPSYGLENLKKLRARST 233 (350)
T ss_dssp EECTTSCCCCCCSSSCTTCCEEECTTC
T ss_pred hhcCCCCcCccChhhhccchHhhhccC
Confidence 999999999766655666666664443
No 343
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.5e-21 Score=211.81 Aligned_cols=192 Identities=23% Similarity=0.432 Sum_probs=150.0
Q ss_pred CCEEEEEecCCCCccccCccccCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEcc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLS 145 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 145 (933)
.+++.|++++++++. ++ .+..+++|++|+|++|.+++..+ +..+++|++|+|++|.+++++ .+..+++|++|+|+
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT 115 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECC
Confidence 367888888888874 44 57788888888888888887666 888888888888888888775 47788888888888
Q ss_pred CCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcc
Q 002346 146 DNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLS 225 (933)
Q Consensus 146 ~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~ 225 (933)
+|++.. ++ .+..+++|++|+|++|++.+..+ +..+++|++|+|++|++++ ++. +
T Consensus 116 ~n~l~~---~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l------------------ 169 (308)
T 1h6u_A 116 STQITD---VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-L------------------ 169 (308)
T ss_dssp TSCCCC---CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-G------------------
T ss_pred CCCCCC---ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-h------------------
Confidence 888877 33 37888888888888888877644 7788888888888888873 332 3
Q ss_pred cccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccC
Q 002346 226 GTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGP 297 (933)
Q Consensus 226 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 297 (933)
..+++|+.|+|++|++++..+ +..+++|+.|+|++|++++..+ +..+++|+.|+|++|++++.
T Consensus 170 ------~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 170 ------ANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp ------TTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred ------cCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 347888888888888887654 7888888888888888885543 78888888888888888764
No 344
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.7e-23 Score=235.29 Aligned_cols=250 Identities=18% Similarity=0.200 Sum_probs=197.2
Q ss_pred ccCccccCCcccceeecccccccccCC-----CccCcCcCceeccccccccCCC---CCc-------ccCCCCCCEEEcc
Q 002346 81 TLSPEISSLTQLETLSFQMNNIAGAIP-----SLANATSLQDIYLDNNNFTSVP---TGC-------FDGLTNLQVLSLS 145 (933)
Q Consensus 81 ~~~~~~~~l~~L~~L~l~~N~l~~~~p-----~~~~l~~L~~L~Ls~N~l~~~~---~~~-------~~~l~~L~~L~Ls 145 (933)
.++..+..+++|++|+|++|.|++..+ .+..+++|++|+|++|.+..+. +.. |..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 566778889999999999999987533 4778999999999997665432 222 3788999999999
Q ss_pred CCCCCCCC--CCCccccCCccCCeeeccCcccCCCCChhhc----CC---------CCCCEEEccCCcCC-CCCCccccc
Q 002346 146 DNPNLAPW--PFPNELTKSTSLTTLYMDNANIFGLIPDFFD----SF---------SNLQNLRLSYNNFT-GSLPASFAK 209 (933)
Q Consensus 146 ~N~~~~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~L~~N~l~-~~~p~~~~~ 209 (933)
+|.+.... .+|..+..+++|++|+|++|.+....+..+. .+ ++|++|+|++|+++ +.+|. ++
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~- 180 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE-WA- 180 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH-HH-
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH-HH-
Confidence 99987622 2566889999999999999999755444443 34 89999999999997 33332 11
Q ss_pred cccchhhcccccCCcccccccccCCccCcEEEecCCccC--C---CCC-CCCCCCCCCEEEccCCccc----ccCccccc
Q 002346 210 SDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFT--G---PIP-DLSKCESLFDLSLRDNQLT----GVVPASVI 279 (933)
Q Consensus 210 ~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~--~---~~~-~~~~~~~L~~L~L~~N~l~----~~~p~~l~ 279 (933)
..+..+++|+.|+|++|+++ | ..+ .+..+++|+.|+|++|+++ +.+|..+.
T Consensus 181 -------------------~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 181 -------------------KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp -------------------HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred -------------------HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 12344889999999999998 3 445 6889999999999999996 67899999
Q ss_pred CCCCCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCC
Q 002346 280 SLPALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGW 359 (933)
Q Consensus 280 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 359 (933)
.+++|+.|+|++|.+++... ..+
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~---------------------------------------------------------~~l 264 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGA---------------------------------------------------------AAV 264 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHH---------------------------------------------------------HHH
T ss_pred cCCCcCEEECCCCCCchhhH---------------------------------------------------------HHH
Confidence 99999999999999885311 001
Q ss_pred Cccc--cCCCceeEEEccCccccC----cCchhh-cCcccCCeEecccCcccCCCC
Q 002346 360 PFVT--CSQGRIITINLANKLLAG----NISPAY-ANLTSLKNLYLQQNNLTGPIP 408 (933)
Q Consensus 360 p~~~--~~l~~L~~L~Ls~N~l~g----~~p~~~-~~l~~L~~L~L~~N~l~g~~p 408 (933)
|..+ +.+++|+.|+|++|.+++ .+|..+ .++++|+.|+|++|++++..|
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 2233 336889999999999998 588887 779999999999999997775
No 345
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=1.6e-21 Score=226.71 Aligned_cols=192 Identities=21% Similarity=0.323 Sum_probs=163.1
Q ss_pred cccce-EeCCCCCEEEEEecCCCCccccCccccCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCccc
Q 002346 56 EWTGI-NCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFD 134 (933)
Q Consensus 56 ~w~gv-~c~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 134 (933)
.|.|+ .|.. ++++.|+|++|+|++ +|..+. ++|++|+|++|.|+. +| ..+++|++|+|++|+|+++|. |.
T Consensus 49 ~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~-ip--~~l~~L~~L~Ls~N~l~~ip~--l~ 119 (571)
T 3cvr_A 49 AVSLLKECLI-NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS-LP--ELPASLEYLDACDNRLSTLPE--LP 119 (571)
T ss_dssp HHHHHHHHHH-TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSC-CC--CCCTTCCEEECCSSCCSCCCC--CC
T ss_pred hhhhcccccc-CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcc-cc--cccCCCCEEEccCCCCCCcch--hh
Confidence 79999 7864 579999999999997 777664 899999999999995 45 567999999999999999887 55
Q ss_pred CCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccch
Q 002346 135 GLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQN 214 (933)
Q Consensus 135 ~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~ 214 (933)
+ +|++|+|++|++++ +|. .+++|+.|+|++|+|++ +|. .+++|++|+|++|+|++ +|. |
T Consensus 120 ~--~L~~L~Ls~N~l~~---lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l------- 178 (571)
T 3cvr_A 120 A--SLKHLDVDNNQLTM---LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L------- 178 (571)
T ss_dssp T--TCCEEECCSSCCSC---CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C-------
T ss_pred c--CCCEEECCCCcCCC---CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h-------
Confidence 5 99999999999988 666 68999999999999988 455 57899999999999995 775 4
Q ss_pred hhcccccCCcccccccccCCccCcEEEecCCccCCCCCCCCCCCCC-------CEEEccCCcccccCcccccCCCCCCEE
Q 002346 215 LWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESL-------FDLSLRDNQLTGVVPASVISLPALLNI 287 (933)
Q Consensus 215 l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L-------~~L~L~~N~l~~~~p~~l~~l~~L~~L 287 (933)
.++|+.|+|++|+|+..++ +.. +| +.|+|++|+|+ .+|..+..+++|+.|
T Consensus 179 -------------------~~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L 235 (571)
T 3cvr_A 179 -------------------PESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI 235 (571)
T ss_dssp -------------------CTTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEE
T ss_pred -------------------hCCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEE
Confidence 2689999999999996555 554 77 99999999999 689888889999999
Q ss_pred EccCccCccCCCC
Q 002346 288 SLQNNKLQGPYPL 300 (933)
Q Consensus 288 ~Ls~N~l~~~~p~ 300 (933)
+|++|+|++.+|.
T Consensus 236 ~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 236 ILEDNPLSSRIRE 248 (571)
T ss_dssp ECCSSSCCHHHHH
T ss_pred EeeCCcCCCcCHH
Confidence 9999999986663
No 346
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=2.5e-21 Score=214.17 Aligned_cols=244 Identities=16% Similarity=0.166 Sum_probs=172.8
Q ss_pred ceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCC-ccccCCccCCe-eec
Q 002346 93 ETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFP-NELTKSTSLTT-LYM 170 (933)
Q Consensus 93 ~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p-~~~~~l~~L~~-L~L 170 (933)
++++.++++++.++..+ .+++++|+|++|+|+.++.++|.++++|++|+|++|++.+ .+| ..|.++++|.. +.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~--~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE--VIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC--EECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC--ccChhHhhcchhhhhhhcc
Confidence 56888999999765556 3689999999999999999999999999999999999866 343 46788888775 566
Q ss_pred cCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecC-CccCC
Q 002346 171 DNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHK-NQFTG 249 (933)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~-N~l~~ 249 (933)
++|++....|..|..+++|++|++++|++++..+..+. ...++..|++.+ |+++.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~------------------------~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI------------------------HSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC------------------------CBSSCEEEEEESCTTCCE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhc------------------------ccchhhhhhhcccccccc
Confidence 77899998899999999999999999999844443332 255677788755 56665
Q ss_pred CCCC-CCCC-CCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCC
Q 002346 250 PIPD-LSKC-ESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCD 327 (933)
Q Consensus 250 ~~~~-~~~~-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~ 327 (933)
..+. |..+ ..++.|+|++|+|+ .+|.......+|+.|++++|+..+.+|
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~---------------------------- 194 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELP---------------------------- 194 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCC----------------------------
T ss_pred ccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCC----------------------------
Confidence 5543 5554 35778888888888 455555556677777776533222222
Q ss_pred chhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCC
Q 002346 328 PQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPI 407 (933)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~ 407 (933)
+..+..+++|+.|+|++|+|+...+..|.+|++|+.+++ +++. .+
T Consensus 195 --------------------------------~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~-~l 239 (350)
T 4ay9_X 195 --------------------------------NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KL 239 (350)
T ss_dssp --------------------------------TTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCC-CC
T ss_pred --------------------------------HHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcC-cC
Confidence 123445677888888888888544444555444444433 2333 66
Q ss_pred CcccCCCCCcCEEeccCCcCcc
Q 002346 408 PDGLTKLASLQNLDVSNNNLSG 429 (933)
Q Consensus 408 p~~~~~l~~L~~l~ls~N~l~g 429 (933)
| .+.++++|+.++++++.-..
T Consensus 240 P-~l~~l~~L~~l~l~~~~~c~ 260 (350)
T 4ay9_X 240 P-TLEKLVALMEASLTYPSHCC 260 (350)
T ss_dssp C-CTTTCCSCCEEECSCHHHHH
T ss_pred C-CchhCcChhhCcCCCCcccc
Confidence 7 47888888888888765543
No 347
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.3e-20 Score=219.24 Aligned_cols=195 Identities=24% Similarity=0.326 Sum_probs=111.5
Q ss_pred cCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEE
Q 002346 114 SLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLR 193 (933)
Q Consensus 114 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 193 (933)
+|+.|+|++|+|+++|...+ ++|++|+|++|++.. +| ..+++|+.|+|++|+|++ +|. |.. +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~---ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNALIS---LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSC---CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcc---cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 55566666666655554422 456666666665554 44 335566666666666655 344 443 666666
Q ss_pred ccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCccccc
Q 002346 194 LSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGV 273 (933)
Q Consensus 194 L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~ 273 (933)
|++|+|++ +|. . +++|+.|+|++|+|++.++ .+++|+.|+|++|+|++
T Consensus 127 Ls~N~l~~-lp~---~------------------------l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~- 174 (571)
T 3cvr_A 127 VDNNQLTM-LPE---L------------------------PALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF- 174 (571)
T ss_dssp CCSSCCSC-CCC---C------------------------CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-
T ss_pred CCCCcCCC-CCC---c------------------------CccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-
Confidence 66666663 443 1 4566666666666665333 45666677777777664
Q ss_pred CcccccCCCCCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCC
Q 002346 274 VPASVISLPALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGN 353 (933)
Q Consensus 274 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 353 (933)
+|. |. ++|+.|+|++|+|+. +|.+..+|
T Consensus 175 lp~-l~--~~L~~L~Ls~N~L~~-lp~~~~~L------------------------------------------------ 202 (571)
T 3cvr_A 175 LPE-LP--ESLEALDVSTNLLES-LPAVPVRN------------------------------------------------ 202 (571)
T ss_dssp CCC-CC--TTCCEEECCSSCCSS-CCCCC---------------------------------------------------
T ss_pred cch-hh--CCCCEEECcCCCCCc-hhhHHHhh------------------------------------------------
Confidence 555 44 666777777766663 22121111
Q ss_pred CCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCC
Q 002346 354 NACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLA 415 (933)
Q Consensus 354 ~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~ 415 (933)
......|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|++.+|..+..+.
T Consensus 203 ---------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 203 ---------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp --------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred ---------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 001123466666666666 3666666677777777777777777776665543
No 348
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.7e-22 Score=222.65 Aligned_cols=251 Identities=16% Similarity=0.163 Sum_probs=179.6
Q ss_pred ccceeecccccccccCCCccCc--CcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCee
Q 002346 91 QLETLSFQMNNIAGAIPSLANA--TSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTL 168 (933)
Q Consensus 91 ~L~~L~l~~N~l~~~~p~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L 168 (933)
.++.|++++|.+.. ..+..+ ++++.|++++|.+++.++. +..+++|++|+|++|.+... .++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~~--~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~-~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLHP--DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS-TLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCCH--HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH-HHHHHHTTBCCCSEE
T ss_pred hheeeccccccCCH--HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH-HHHHHHhhCCCCCEE
Confidence 47788888887762 245555 7888888888888887766 45688888888888876541 156677888888888
Q ss_pred eccCcccCCCCChhhcCCCCCCEEEccCC-cCCCC-CCccccccccchhhcccccCCcccccccccCCccCcEEEecCC-
Q 002346 169 YMDNANIFGLIPDFFDSFSNLQNLRLSYN-NFTGS-LPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKN- 245 (933)
Q Consensus 169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N- 245 (933)
+|++|.+++..+..++.+++|++|+|++| .+++. ++..+ .++++|++|+|++|
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~------------------------~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL------------------------SSCSRLDELNLSWCF 179 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH------------------------HHCTTCCEEECCCCT
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH------------------------hcCCCCCEEcCCCCC
Confidence 88888887777888888888888888888 56532 33322 33788888888888
Q ss_pred ccCCC-CC-CCCCCC-CCCEEEccCC--ccc-ccCcccccCCCCCCEEEccCcc-CccCCCCCCCCccEEeccCCcCCCC
Q 002346 246 QFTGP-IP-DLSKCE-SLFDLSLRDN--QLT-GVVPASVISLPALLNISLQNNK-LQGPYPLFPSKVQKVSLDHNNFCKN 318 (933)
Q Consensus 246 ~l~~~-~~-~~~~~~-~L~~L~L~~N--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~l~~n~~~~~ 318 (933)
.+++. ++ .+..++ +|+.|+|++| .++ +.+|..+..+++|+.|+|++|. +++..
T Consensus 180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-------------------- 239 (336)
T 2ast_B 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-------------------- 239 (336)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG--------------------
T ss_pred CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH--------------------
Confidence 77753 23 366777 8888888888 454 4567777788888888888887 54321
Q ss_pred CCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCcc-ccCcCchhhcCcccCCeEe
Q 002346 319 SSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKL-LAGNISPAYANLTSLKNLY 397 (933)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~ 397 (933)
+..+..+++|+.|+|++|. +.......++++++|+.|+
T Consensus 240 -----------------------------------------~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 240 -----------------------------------------FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278 (336)
T ss_dssp -----------------------------------------GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred -----------------------------------------HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence 2244556788999999885 3322223688899999999
Q ss_pred cccCcccCCCCcccCCC-CCcCEEeccCCcCcccCCCC
Q 002346 398 LQQNNLTGPIPDGLTKL-ASLQNLDVSNNNLSGKVPDF 434 (933)
Q Consensus 398 L~~N~l~g~~p~~~~~l-~~L~~l~ls~N~l~g~~p~~ 434 (933)
|++| ++. ..+..+ ..|..|++++|+|++..|..
T Consensus 279 l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 279 VFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp CTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred ccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 9998 332 233333 23667778999999988854
No 349
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=2.9e-20 Score=189.41 Aligned_cols=103 Identities=26% Similarity=0.343 Sum_probs=44.6
Q ss_pred eeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCc
Q 002346 94 TLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNA 173 (933)
Q Consensus 94 ~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n 173 (933)
.++++++.++.++..+ .++|++|+|++|+++++++..|..+++|++|+|++|++.. ..+..+..+++|++|+|++|
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS--LPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc--cChhhcCCCCCcCEEECCCC
Confidence 4455555554433322 2345555555555555554444445555555555444443 11222333444444444444
Q ss_pred ccCCCCChhhcCCCCCCEEEccCCcCC
Q 002346 174 NIFGLIPDFFDSFSNLQNLRLSYNNFT 200 (933)
Q Consensus 174 ~l~~~~p~~~~~l~~L~~L~L~~N~l~ 200 (933)
++++..+..|..+++|++|+|++|+++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~ 113 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQ 113 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCc
Confidence 443333333333344444444444333
No 350
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=6.1e-23 Score=244.83 Aligned_cols=350 Identities=13% Similarity=0.065 Sum_probs=213.6
Q ss_pred CEEEEEecCCC-Ccc-ccCccccCCcccceeeccccccccc----CC-CccCcCcCceeccccccccCCCCC----cccC
Q 002346 67 RVTTISLAKSG-LSG-TLSPEISSLTQLETLSFQMNNIAGA----IP-SLANATSLQDIYLDNNNFTSVPTG----CFDG 135 (933)
Q Consensus 67 ~v~~L~l~~~~-l~~-~~~~~~~~l~~L~~L~l~~N~l~~~----~p-~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~ 135 (933)
+++.|+|+++. ++. .++..+..+++|++|+|++|.+++. ++ .+..+++|++|+|++|.++++... .+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 38888888765 211 1223334778888888888887665 22 245678888888888888754433 2456
Q ss_pred CCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccC---CCCChhhcCCCCCCEEEccCCcCCCCCCccccc-cc
Q 002346 136 LTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIF---GLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAK-SD 211 (933)
Q Consensus 136 l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~ 211 (933)
+++|+.|+|++|.+.+ +|..+.++++|+.|+++.+... +..+..+..+++|+.|+++++... .+|..+.. .+
T Consensus 219 ~~~L~~L~L~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~ 294 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILE---LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQ 294 (592)
T ss_dssp CTTCCEEECSSCBGGG---GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGG
T ss_pred CCCCcEEeccCccHHH---HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCC
Confidence 7888888888887766 6677778888888888753322 233455666777777777775433 55555543 56
Q ss_pred cchhhcccccCCcccccccccCCccCcEEEecCCccCC-CCCC-CCCCCCCCEEEcc-----------CCccccc-Cccc
Q 002346 212 IQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTG-PIPD-LSKCESLFDLSLR-----------DNQLTGV-VPAS 277 (933)
Q Consensus 212 l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~-~~~~~~L~~L~L~-----------~N~l~~~-~p~~ 277 (933)
|++|++.+|.+...+....+..+++|+.|+|+ |.+.. .++. +..+++|+.|+|+ .|.+++. ++..
T Consensus 295 L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred CcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 77777777775544443445667777777777 33332 2222 3456777777777 3555543 2223
Q ss_pred ccCCCCCCEEEccCccCccCCCC----CCCCccEEecc----CCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCC
Q 002346 278 VISLPALLNISLQNNKLQGPYPL----FPSKVQKVSLD----HNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDS 349 (933)
Q Consensus 278 l~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~l~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (933)
+..+++|++|+++.|.+++..+. ...+|+.|+++ .|.+.+.+.+ . .+..+.......+.+...
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~------~---~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD------N---GVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH------H---HHHHHHHHCTTCCEEEEE
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH------H---HHHHHHHhCCCCCEEEEe
Confidence 44567777777777777654322 13467777775 4455432211 0 000111111111111111
Q ss_pred CCCCCCCCCCCcccc-CCCceeEEEccCccccC-cCchhhcCcccCCeEecccCcccCC-CCcccCCCCCcCEEeccCCc
Q 002346 350 WEGNNACDGWPFVTC-SQGRIITINLANKLLAG-NISPAYANLTSLKNLYLQQNNLTGP-IPDGLTKLASLQNLDVSNNN 426 (933)
Q Consensus 350 ~~~~~~~~~~p~~~~-~l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~L~~N~l~g~-~p~~~~~l~~L~~l~ls~N~ 426 (933)
...+...+..+..+. .+++|+.|+|++|++++ .++..+.++++|+.|+|++|++++. ++..+..+++|++|+|++|+
T Consensus 445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 101111111122222 36789999999999887 4566678899999999999998755 44455678999999999999
Q ss_pred Cccc
Q 002346 427 LSGK 430 (933)
Q Consensus 427 l~g~ 430 (933)
+++.
T Consensus 525 it~~ 528 (592)
T 3ogk_B 525 ASMT 528 (592)
T ss_dssp CCTT
T ss_pred CCHH
Confidence 8764
No 351
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=6.2e-21 Score=230.35 Aligned_cols=224 Identities=21% Similarity=0.205 Sum_probs=122.1
Q ss_pred ccchHHHHHHHHHhcCC----CCCCCCCCCCCCCccccceEeCCCCCEEEEEecCCCCccccCccccCCcccceeecccc
Q 002346 25 LGDDGSVMLKLAQSLQN----LPSDWSSTSSTGYCEWTGINCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMN 100 (933)
Q Consensus 25 ~~~d~~~l~~~~~~~~~----~~~~w~~~~~~~~C~w~gv~c~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N 100 (933)
...++.+|+++..+... ....|.. ..+..+.|.++.+.. .+++.|+|.++++.. ++. ..|+.++|+.|
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~-~~~-----~~l~~l~Ls~~ 201 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTG-DSTPSGTATNSAVST-PLTPKIELFANGKDE-ANQ-----ALLQHKKLSQY 201 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcC-CCCccccCCCceecC-CccceEEeeCCCCCc-chh-----hHhhcCccCcc
Confidence 34678899999877643 2234542 345567899988876 678999999998875 232 34566777777
Q ss_pred cccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCC
Q 002346 101 NIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIP 180 (933)
Q Consensus 101 ~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 180 (933)
.|.+. +++.|.+. +++..|..+++|+.|+|++|.+.. +|..+.++++|++|+|++|.|+ .+|
T Consensus 202 ~i~~~-------------~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~---l~~~~~~l~~L~~L~Ls~N~l~-~lp 263 (727)
T 4b8c_D 202 SIDED-------------DDIENRMV-MPKDSKYDDQLWHALDLSNLQIFN---ISANIFKYDFLTRLYLNGNSLT-ELP 263 (727)
T ss_dssp ----------------------------------CCCCCCEEECTTSCCSC---CCGGGGGCCSCSCCBCTTSCCS-CCC
T ss_pred cccCc-------------ccccccee-cChhhhccCCCCcEEECCCCCCCC---CChhhcCCCCCCEEEeeCCcCc-ccC
Confidence 66532 44556665 556678888888888888888876 7778888899999999999888 678
Q ss_pred hhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCCCCCCCCCC
Q 002346 181 DFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESL 260 (933)
Q Consensus 181 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L 260 (933)
..|+.+++|++|+|++|+|+ .+|..|+. +++|++|+|++|.|+.++..|..+++|
T Consensus 264 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------------------l~~L~~L~L~~N~l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 264 AEIKNLSNLRVLDLSHNRLT-SLPAELGS------------------------CFQLKYFYFFDNMVTTLPWEFGNLCNL 318 (727)
T ss_dssp GGGGGGTTCCEEECTTSCCS-SCCSSGGG------------------------GTTCSEEECCSSCCCCCCSSTTSCTTC
T ss_pred hhhhCCCCCCEEeCcCCcCC-ccChhhcC------------------------CCCCCEEECCCCCCCccChhhhcCCCc
Confidence 88888999999999999998 77877654 788888888888888666678888888
Q ss_pred CEEEccCCcccccCcccccCCCC-CCEEEccCccCccCCC
Q 002346 261 FDLSLRDNQLTGVVPASVISLPA-LLNISLQNNKLQGPYP 299 (933)
Q Consensus 261 ~~L~L~~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p 299 (933)
+.|+|++|+|++.+|..+..+.. +..|+|++|.++|.+|
T Consensus 319 ~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 319 QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 88888888888888887765432 2346777777777655
No 352
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.2e-19 Score=213.42 Aligned_cols=189 Identities=20% Similarity=0.309 Sum_probs=136.9
Q ss_pred EEecCCCCccccCccccCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCC
Q 002346 71 ISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNL 150 (933)
Q Consensus 71 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~ 150 (933)
+.+..+.+...++ +..|++|+.|++++|.|..+ +.+..+++|+.|+|++|+|+++++ +..+++|+.|+|++|++.
T Consensus 26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred HhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC
Confidence 3444445544332 45677777888888777754 467777888888888888877765 777888888888888777
Q ss_pred CCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCccccccc
Q 002346 151 APWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDV 230 (933)
Q Consensus 151 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~ 230 (933)
. +| .+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|+|++. ..
T Consensus 101 ~---l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~------------------------ 148 (605)
T 1m9s_A 101 D---LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TV------------------------ 148 (605)
T ss_dssp C---CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GG------------------------
T ss_pred C---Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hh------------------------
Confidence 6 33 677778888888888887764 4577778888888888877742 22
Q ss_pred ccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCC
Q 002346 231 LSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYP 299 (933)
Q Consensus 231 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 299 (933)
+..+++|+.|+|++|+|++.+| +..+++|+.|+|++|+|++. ..+..+++|+.|+|++|++++...
T Consensus 149 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 149 LSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp GGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred hcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 3347888888888888887766 77888888888888888853 357788888888888888876543
No 353
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=1.1e-19 Score=187.75 Aligned_cols=151 Identities=23% Similarity=0.304 Sum_probs=137.4
Q ss_pred CCCCccccceEeCCC----------CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceec
Q 002346 51 STGYCEWTGINCDNS----------NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIY 119 (933)
Q Consensus 51 ~~~~C~w~gv~c~~~----------~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~ 119 (933)
+.+.|+|.+|.|... ..++.|+|++|+|++..+..|..+++|++|+|++|+|+++++ .|..+++|++|+
T Consensus 15 ~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 668899999999752 478999999999999889999999999999999999988777 578999999999
Q ss_pred cccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcC
Q 002346 120 LDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNF 199 (933)
Q Consensus 120 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 199 (933)
|++|+|+++++..|..+++|++|+|++|++.. +|..+..+++|++|+|++|+|.+..+..|..+++|++|+|++|++
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE---LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS---CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCcccc---cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 99999999999999999999999999999986 788999999999999999999998888899999999999999999
Q ss_pred CCCCC
Q 002346 200 TGSLP 204 (933)
Q Consensus 200 ~~~~p 204 (933)
.+..+
T Consensus 172 ~c~c~ 176 (229)
T 3e6j_A 172 DCECR 176 (229)
T ss_dssp CTTBG
T ss_pred cCCcc
Confidence 86554
No 354
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1.5e-19 Score=194.11 Aligned_cols=188 Identities=20% Similarity=0.316 Sum_probs=146.1
Q ss_pred EecCCCCccccCccccCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCC
Q 002346 72 SLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLA 151 (933)
Q Consensus 72 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~ 151 (933)
.+..+.+++.. .+..+++|++|++++|.++.. +.+..+++|++|+|++|+++++++ +..+++|++|+|++|++..
T Consensus 30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred HhcCCCccccc--chhhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC
Confidence 34444444332 245678888888888888765 567778888888888888888776 7888888888888888876
Q ss_pred CCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccc
Q 002346 152 PWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVL 231 (933)
Q Consensus 152 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l 231 (933)
+ ..+..+++|++|+|++|++.+. ..+..+++|++|+|++|++++. .. +
T Consensus 105 ---~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~------------------------l 152 (291)
T 1h6t_A 105 ---L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TV------------------------L 152 (291)
T ss_dssp ---G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG------------------------G
T ss_pred ---C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hh------------------------h
Confidence 3 3488888888888888888775 4678888889999988888743 23 3
Q ss_pred cCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCC
Q 002346 232 SGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYP 299 (933)
Q Consensus 232 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 299 (933)
..+++|+.|+|++|++++..+ +..+++|+.|+|++|+|++ +| .+..+++|+.|++++|+++....
T Consensus 153 ~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 153 SRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred ccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCcc
Confidence 348889999999999988766 8889999999999999985 44 48889999999999999886433
No 355
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=1.7e-21 Score=232.44 Aligned_cols=342 Identities=15% Similarity=0.119 Sum_probs=219.2
Q ss_pred CCEEEEEecCCCCccc----cCccccCCcccceeeccccccccc----CC-CccCcCcCceeccccccccCCCCCcccCC
Q 002346 66 NRVTTISLAKSGLSGT----LSPEISSLTQLETLSFQMNNIAGA----IP-SLANATSLQDIYLDNNNFTSVPTGCFDGL 136 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~----~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 136 (933)
..++.|+|++|.+++. ++..+..+++|++|+|++|.+++. ++ .+.++++|++|+|++|.+.+++ ..+..+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhh
Confidence 4789999999988765 445567889999999999998732 33 3567899999999999998876 558888
Q ss_pred CCCCEEEccCCCCC-CCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCcc-cc-ccccc
Q 002346 137 TNLQVLSLSDNPNL-APWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPAS-FA-KSDIQ 213 (933)
Q Consensus 137 ~~L~~L~Ls~N~~~-~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~-~~~l~ 213 (933)
++|+.|+++.+... .....+..+..+++|+.|+++++. .+.+|..+..+++|++|+|++|.+++..... +. .++|+
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 99999998854322 112345567777788888887753 3455677777788888888888765433322 11 24677
Q ss_pred hhhcccccCCcccccccccCCccCcEEEecC-----------CccCCC-CCC-CCCCCCCCEEEccCCcccccCcccccC
Q 002346 214 NLWMNDQQLGLSGTLDVLSGMTQLRQVWLHK-----------NQFTGP-IPD-LSKCESLFDLSLRDNQLTGVVPASVIS 280 (933)
Q Consensus 214 ~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~-----------N~l~~~-~~~-~~~~~~L~~L~L~~N~l~~~~p~~l~~ 280 (933)
.|++. +.+...+....+..+++|+.|+|++ |.+++. ++. ...+++|+.|+++.|++++..+..+..
T Consensus 322 ~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 322 VLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp EEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred EEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 77776 4444333333445567777777773 455432 111 344677777777777777766666655
Q ss_pred -CCCCCEEEcc----CccCccCCC--------CCCCCccEEeccCCc--CCCCCCCCCCCCCchhhhhHhhhcccCCCcc
Q 002346 281 -LPALLNISLQ----NNKLQGPYP--------LFPSKVQKVSLDHNN--FCKNSSDAGKPCDPQVTTLLQIAGDMGYPAI 345 (933)
Q Consensus 281 -l~~L~~L~Ls----~N~l~~~~p--------~~~~~l~~L~l~~n~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (933)
+++|+.|+|+ .|.+++.+. ....+|+.|+|+++. +.+. .+..+.......+
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~-------------~~~~~~~~~~~L~- 466 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL-------------GLSYIGQYSPNVR- 466 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH-------------HHHHHHHSCTTCC-
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH-------------HHHHHHHhCccce-
Confidence 7777777775 566665311 113467777776432 2211 1111111111111
Q ss_pred ccCCCCCCCCCC-CCCccccCCCceeEEEccCccccCc-CchhhcCcccCCeEecccCcccCCCCccc-CCCCCcCEEec
Q 002346 346 LSDSWEGNNACD-GWPFVTCSQGRIITINLANKLLAGN-ISPAYANLTSLKNLYLQQNNLTGPIPDGL-TKLASLQNLDV 422 (933)
Q Consensus 346 l~~~~~~~~~~~-~~p~~~~~l~~L~~L~Ls~N~l~g~-~p~~~~~l~~L~~L~L~~N~l~g~~p~~~-~~l~~L~~l~l 422 (933)
...+..|...+ .++..+..+++|+.|+|++|.+++. ++..+..+++|+.|+|++|+++..--..+ ..++.|....+
T Consensus 467 -~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~ 545 (592)
T 3ogk_B 467 -WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI 545 (592)
T ss_dssp -EEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEE
T ss_pred -EeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEe
Confidence 11222333222 3455567789999999999998766 45556789999999999999987644444 35777777666
Q ss_pred cCC
Q 002346 423 SNN 425 (933)
Q Consensus 423 s~N 425 (933)
..+
T Consensus 546 ~~~ 548 (592)
T 3ogk_B 546 PSR 548 (592)
T ss_dssp CCC
T ss_pred cCc
Confidence 654
No 356
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.6e-19 Score=193.95 Aligned_cols=100 Identities=20% Similarity=0.294 Sum_probs=49.0
Q ss_pred cceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeecc
Q 002346 92 LETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMD 171 (933)
Q Consensus 92 L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~ 171 (933)
+..+.+..+.+++.. .+..+++|++|++++|.++.++. +..+++|++|+|++|++.. ++. +.++++|++|+|+
T Consensus 26 ~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~---~~~-l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD---IKP-LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCC---CGG-GTTCTTCCEEECC
T ss_pred HHHHHhcCCCccccc-chhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCC---Ccc-cccCCCCCEEECC
Confidence 334445555554332 23445556666666666555532 4555555555555555554 222 4455555555555
Q ss_pred CcccCCCCChhhcCCCCCCEEEccCCcCC
Q 002346 172 NANIFGLIPDFFDSFSNLQNLRLSYNNFT 200 (933)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 200 (933)
+|++.+. ..+..+++|++|+|++|+++
T Consensus 99 ~n~l~~~--~~l~~l~~L~~L~L~~n~i~ 125 (291)
T 1h6t_A 99 ENKVKDL--SSLKDLKKLKSLSLEHNGIS 125 (291)
T ss_dssp SSCCCCG--GGGTTCTTCCEEECTTSCCC
T ss_pred CCcCCCC--hhhccCCCCCEEECCCCcCC
Confidence 5554442 22444444444444444444
No 357
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=2.7e-19 Score=210.47 Aligned_cols=191 Identities=24% Similarity=0.322 Sum_probs=155.4
Q ss_pred CCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCe
Q 002346 88 SLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTT 167 (933)
Q Consensus 88 ~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~ 167 (933)
.+..+..+.++.+.+...++ +..+++|+.|+|++|.|..++ .|..+++|+.|+|++|++.. ++. +..+++|+.
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~---~~~-l~~l~~L~~ 91 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD---IKP-LTNLKNLGW 91 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCC---CGG-GGGCTTCCE
T ss_pred HHHHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCC---Chh-hccCCCCCE
Confidence 35566777888888876554 677899999999999999986 38899999999999999988 444 899999999
Q ss_pred eeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCcc
Q 002346 168 LYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQF 247 (933)
Q Consensus 168 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l 247 (933)
|+|++|.|.+. ..+..+++|++|+|++|+|++ ++ . +..+++|+.|+|++|+|
T Consensus 92 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l~-~------------------------l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 92 LFLDENKIKDL--SSLKDLKKLKSLSLEHNGISD-IN-G------------------------LVHLPQLESLYLGNNKI 143 (605)
T ss_dssp EECCSSCCCCC--TTSTTCTTCCEEECTTSCCCC-CG-G------------------------GGGCTTCSEEECCSSCC
T ss_pred EECcCCCCCCC--hhhccCCCCCEEEecCCCCCC-Cc-c------------------------ccCCCccCEEECCCCcc
Confidence 99999999874 378899999999999999984 33 2 33489999999999999
Q ss_pred CCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCC--CCCCccEEeccCCcCCC
Q 002346 248 TGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPL--FPSKVQKVSLDHNNFCK 317 (933)
Q Consensus 248 ~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~l~~n~~~~ 317 (933)
++. +.+..+++|+.|+|++|+|++..| +..+++|+.|+|++|+|++. |. .+.+|+.|+|++|.+.+
T Consensus 144 ~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 144 TDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEEC
T ss_pred CCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcC
Confidence 986 678899999999999999997666 88999999999999998864 22 13455666666665544
No 358
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=7e-19 Score=180.52 Aligned_cols=152 Identities=22% Similarity=0.278 Sum_probs=131.5
Q ss_pred EEEecCCCCccccCccccCCcccceeecccccccccCC--CccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCC
Q 002346 70 TISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP--SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDN 147 (933)
Q Consensus 70 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 147 (933)
.+++++++++ .+|..+. ..+++|+|++|+|++.++ .|..+++|++|+|++|+|+++++..|.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4566667777 4676654 356899999999999866 4889999999999999999999989999999999999999
Q ss_pred CCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccc
Q 002346 148 PNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGT 227 (933)
Q Consensus 148 ~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~ 227 (933)
++.. ..+..|..+++|++|+|++|+|.+..|..|..+++|++|+|++|+|++..|..|..
T Consensus 92 ~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------------ 151 (220)
T 2v70_A 92 RLEN--VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT------------------ 151 (220)
T ss_dssp CCCC--CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT------------------
T ss_pred ccCc--cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC------------------
Confidence 9988 45567999999999999999999999999999999999999999999777876654
Q ss_pred cccccCCccCcEEEecCCccCCC
Q 002346 228 LDVLSGMTQLRQVWLHKNQFTGP 250 (933)
Q Consensus 228 ~~~l~~l~~L~~L~L~~N~l~~~ 250 (933)
+++|+.|+|++|.+...
T Consensus 152 ------l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 152 ------LHSLSTLNLLANPFNCN 168 (220)
T ss_dssp ------CTTCCEEECCSCCEECS
T ss_pred ------CCCCCEEEecCcCCcCC
Confidence 88899999999888754
No 359
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=7e-19 Score=180.51 Aligned_cols=151 Identities=21% Similarity=0.332 Sum_probs=129.4
Q ss_pred CCCCCCccccceEeCCC----------CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCce
Q 002346 49 TSSTGYCEWTGINCDNS----------NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQD 117 (933)
Q Consensus 49 ~~~~~~C~w~gv~c~~~----------~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~ 117 (933)
.+..+.|.|..|.|.+. ..++.|+|++|+|++..+..|..+++|++|+|++|+|+++.| .|.++++|++
T Consensus 5 CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 5 CPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp SCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred CCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence 34567799999999752 368889999999987777788889999999999999988877 7888999999
Q ss_pred eccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCC
Q 002346 118 IYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYN 197 (933)
Q Consensus 118 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 197 (933)
|+|++|+|+.++...|.++++|++|+|++|++.. ..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINC--LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCCCCE--eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 9999999999988888889999999999998888 55778888999999999999998888888888999999999999
Q ss_pred cCCC
Q 002346 198 NFTG 201 (933)
Q Consensus 198 ~l~~ 201 (933)
++..
T Consensus 163 ~~~c 166 (220)
T 2v9t_B 163 PFIC 166 (220)
T ss_dssp CEEC
T ss_pred CcCC
Confidence 8874
No 360
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=2.1e-21 Score=231.62 Aligned_cols=243 Identities=16% Similarity=0.212 Sum_probs=146.1
Q ss_pred CCEEEEEecCCCCccccCcccc-CCcccceeecccc-ccccc-CCC-ccCcCcCceeccccccccCCCCCccc----CCC
Q 002346 66 NRVTTISLAKSGLSGTLSPEIS-SLTQLETLSFQMN-NIAGA-IPS-LANATSLQDIYLDNNNFTSVPTGCFD----GLT 137 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~N-~l~~~-~p~-~~~l~~L~~L~Ls~N~l~~~~~~~~~----~l~ 137 (933)
.+++.|+|+++.+++..+..+. .+++|++|+|++| .++.. ++. +.++++|++|+|++|.+++.....+. .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4688999999888877666665 6889999999988 55542 333 44788999999999988875544333 567
Q ss_pred CCCEEEccCCC--CCCCCCCCccccCCccCCeeeccCc-ccCCCCChhhcCCCCCCEEEccCCc----------------
Q 002346 138 NLQVLSLSDNP--NLAPWPFPNELTKSTSLTTLYMDNA-NIFGLIPDFFDSFSNLQNLRLSYNN---------------- 198 (933)
Q Consensus 138 ~L~~L~Ls~N~--~~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~N~---------------- 198 (933)
+|+.|+|++|. +.. ..++..+.++++|++|+|++| .+.+ ++..+..+++|++|+++.+.
T Consensus 185 ~L~~L~l~~~~~~~~~-~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 185 SLVSLNISCLASEVSF-SALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCEEECTTCCSCCCH-HHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred cCcEEEecccCCcCCH-HHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 89999999886 111 011222345689999999888 4444 67777788888888866552
Q ss_pred ----------CCCCCCcccc-----ccccchhhcccccCCcccccccccCCccCcEEEecCCccCC-CCCC-CCCCCCCC
Q 002346 199 ----------FTGSLPASFA-----KSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTG-PIPD-LSKCESLF 261 (933)
Q Consensus 199 ----------l~~~~p~~~~-----~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~-~~~~~~L~ 261 (933)
+....+..+. ...|++|++..|.+...+....+..+++|+.|++++| ++. .++. ...+++|+
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 1111111111 1456666666666443333333445666666666666 321 1111 22356666
Q ss_pred EEEc---------cCCcccccCccccc-CCCCCCEEEccCccCccCCCC----CCCCccEEecc
Q 002346 262 DLSL---------RDNQLTGVVPASVI-SLPALLNISLQNNKLQGPYPL----FPSKVQKVSLD 311 (933)
Q Consensus 262 ~L~L---------~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~l~ 311 (933)
.|+| +.|.+++.....+. .+++|+.|+++.|.+++.... ...+|+.|+|+
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 6666 23444433333332 356666666666666643221 13466677766
No 361
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=178.80 Aligned_cols=155 Identities=18% Similarity=0.243 Sum_probs=134.4
Q ss_pred CEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCCC--CCCCCCCCEEEccC
Q 002346 190 QNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPD--LSKCESLFDLSLRD 267 (933)
Q Consensus 190 ~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~--~~~~~~L~~L~L~~ 267 (933)
+.+++++|.++ .+|..+. ..++.|+|++|+|++.++. |..+++|+.|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--------------------------~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~ 66 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--------------------------QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN 66 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--------------------------TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--------------------------CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC
Confidence 58899999988 6776652 3568999999999987653 78899999999999
Q ss_pred CcccccCcccccCCCCCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCcccc
Q 002346 268 NQLTGVVPASVISLPALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILS 347 (933)
Q Consensus 268 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 347 (933)
|+|++..+..|..+++|++|+|++|++++..+
T Consensus 67 N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~------------------------------------------------ 98 (220)
T 2v70_A 67 NKITDIEEGAFEGASGVNEILLTSNRLENVQH------------------------------------------------ 98 (220)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCCCCG------------------------------------------------
T ss_pred CcCCEECHHHhCCCCCCCEEECCCCccCccCH------------------------------------------------
Confidence 99998888889999999999999999885433
Q ss_pred CCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcC
Q 002346 348 DSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNL 427 (933)
Q Consensus 348 ~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l 427 (933)
..+..+++|++|+|++|++++..|..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|++
T Consensus 99 -------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 99 -------------KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp -------------GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred -------------hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 3455678999999999999999999999999999999999999999899999999999999999999
Q ss_pred cccCC
Q 002346 428 SGKVP 432 (933)
Q Consensus 428 ~g~~p 432 (933)
++..+
T Consensus 166 ~c~c~ 170 (220)
T 2v70_A 166 NCNCY 170 (220)
T ss_dssp ECSGG
T ss_pred cCCCc
Confidence 98765
No 362
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=6.8e-19 Score=195.46 Aligned_cols=178 Identities=25% Similarity=0.312 Sum_probs=124.0
Q ss_pred EEEecCCCCccccCccccCCcccceeecccccccccCC-Ccc-CcCcCceeccccccccCCCCCcccCCCCCCEEEccCC
Q 002346 70 TISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLA-NATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDN 147 (933)
Q Consensus 70 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 147 (933)
.+++++++|+ .+|..+. ..++.|+|++|+|+++.+ .+. ++++|++|+|++|+|+++++..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 4566667777 4666554 358889999999988877 565 8888888888888888888888888888888888888
Q ss_pred CCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccc
Q 002346 148 PNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGT 227 (933)
Q Consensus 148 ~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~ 227 (933)
++.. ..+..|..+++|++|+|++|+|.+..|..|..+++|++|+|++|+|+ .+|..+..
T Consensus 99 ~l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~------------------ 157 (361)
T 2xot_A 99 HLHT--LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIK------------------ 157 (361)
T ss_dssp CCCE--ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC------------------
T ss_pred cCCc--CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhc------------------
Confidence 8776 33446677777777777777777777777777777777777777776 34433210
Q ss_pred cccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCC--CCEEEccCccCcc
Q 002346 228 LDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPA--LLNISLQNNKLQG 296 (933)
Q Consensus 228 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~ 296 (933)
.+..+++|+.|+|++|+|++..+..+..++. |+.|+|++|++..
T Consensus 158 -------------------------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 158 -------------------------DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp -----------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred -------------------------CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 0134566666666666666544556666665 3677777777763
No 363
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=3.7e-18 Score=175.12 Aligned_cols=162 Identities=22% Similarity=0.345 Sum_probs=140.4
Q ss_pred CccccceEeCCCCCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCc
Q 002346 54 YCEWTGINCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGC 132 (933)
Q Consensus 54 ~C~w~gv~c~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~ 132 (933)
.|. .+..|.. +.+++++++++ .+|..+. ++|++|+|++|+|+++++ .|..+++|++|+|++|+|+++.+..
T Consensus 4 ~CP-~~C~C~~----~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~ 75 (220)
T 2v9t_B 4 HCP-AACTCSN----NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA 75 (220)
T ss_dssp CSC-TTSEEET----TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT
T ss_pred CCC-CCCEECC----CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH
Confidence 354 2456653 57899999998 5776665 789999999999999888 7999999999999999999999999
Q ss_pred ccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCcccccccc
Q 002346 133 FDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDI 212 (933)
Q Consensus 133 ~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l 212 (933)
|.++++|++|+|++|++.. ..+..|..+++|++|+|++|+|.+..|..|..+++|++|+|++|+|++..+..|.
T Consensus 76 ~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---- 149 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKITE--LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS---- 149 (220)
T ss_dssp TTTCSSCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT----
T ss_pred hhCCcCCCEEECCCCcCCc--cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh----
Confidence 9999999999999999997 3345578999999999999999999999999999999999999999965555544
Q ss_pred chhhcccccCCcccccccccCCccCcEEEecCCccCC
Q 002346 213 QNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTG 249 (933)
Q Consensus 213 ~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~ 249 (933)
.+++|+.|+|++|.+..
T Consensus 150 --------------------~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 150 --------------------PLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp --------------------TCTTCCEEECCSSCEEC
T ss_pred --------------------CCCCCCEEEeCCCCcCC
Confidence 38889999999998864
No 364
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.75 E-value=1.1e-18 Score=183.68 Aligned_cols=139 Identities=22% Similarity=0.210 Sum_probs=107.7
Q ss_pred CCccCCccccCCCeEEEEEEe-CCCcE--EEEEEeccccCCc----------------------hhHHHHHHHHHHHHhc
Q 002346 582 NFSEANILGRGGFGVVYGGEL-PDGTK--IAVKRMESNTMGN----------------------KGLSEFQAEIAVLTKV 636 (933)
Q Consensus 582 ~~~~~~~lg~G~~g~Vy~~~~-~~~~~--vavK~~~~~~~~~----------------------~~~~~~~~E~~~l~~l 636 (933)
-|++.+.||+|+||.||+|.. .+|+. ||||+++...... .....+.+|+.++..+
T Consensus 48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l 127 (258)
T 1zth_A 48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA 127 (258)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999976 68999 9999876542110 1124688999999999
Q ss_pred CCCcc--eeEEeEeeeCceeEEEEeecCC-C----ChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhh-hccCCCe
Q 002346 637 RHRHL--VALLGYCINGSERLLVYEYMPR-G----TLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLH-SLAQQSF 708 (933)
Q Consensus 637 ~h~ni--v~l~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH-~~~~~~i 708 (933)
+|+++ +.++++ ...++||||+.+ | +|.++... .++.++..++.|++.|++||| + .+|
T Consensus 128 ~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~--------~~~~~~~~i~~qi~~~l~~lH~~---~gi 192 (258)
T 1zth_A 128 KEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE--------LKELDVEGIFNDVVENVKRLYQE---AEL 192 (258)
T ss_dssp HHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG--------GGGSCHHHHHHHHHHHHHHHHHT---SCE
T ss_pred HhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc--------cChHHHHHHHHHHHHHHHHHHHH---CCE
Confidence 88754 344442 356899999942 4 66665422 224567789999999999999 7 899
Q ss_pred EecCCCCCcEEecCCCcEEEecccccccC
Q 002346 709 IHRDLKPSNILIGDDMRAKVADFGLVKNA 737 (933)
Q Consensus 709 vH~Dik~~Nill~~~~~~kl~DfGla~~~ 737 (933)
+||||||+|||++. .++|+|||+|...
T Consensus 193 vHrDlkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 193 VHADLSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp ECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred EeCCCCHHHEEEcC--cEEEEECcccccC
Confidence 99999999999998 9999999998754
No 365
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.3e-17 Score=172.36 Aligned_cols=109 Identities=28% Similarity=0.361 Sum_probs=56.2
Q ss_pred ceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccC
Q 002346 93 ETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDN 172 (933)
Q Consensus 93 ~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~ 172 (933)
+.++++++.++.++..+. ++|++|+|++|+|+++++..|.++++|++|+|++|++.. ..+..|..+++|++|+|++
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--cChhhcccCCCcCEEECCC
Confidence 445566666554443332 555666666666665555555555555555555555544 1223344555555555555
Q ss_pred cccCCCCChhhcCCCCCCEEEccCCcCCCCCCcc
Q 002346 173 ANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPAS 206 (933)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 206 (933)
|+|++..+..|..+++|++|+|++|+|+ .+|..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 130 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRG 130 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcc
Confidence 5555444444455555555555555554 44433
No 366
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.4e-18 Score=183.43 Aligned_cols=173 Identities=22% Similarity=0.226 Sum_probs=136.7
Q ss_pred CCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCe
Q 002346 88 SLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTT 167 (933)
Q Consensus 88 ~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~ 167 (933)
.+.+++.+++++|.+++.. .+..+++|++|++++|.|+.++ .+..+++|++|+|++|++.. ++. +.++++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~---~~~-l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISD---LSP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC---CGG-GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCC---Chh-hccCCCCCE
Confidence 5667778888888887655 6778888888888888888876 47888888888888888887 444 888888888
Q ss_pred eeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCcc
Q 002346 168 LYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQF 247 (933)
Q Consensus 168 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l 247 (933)
|+|++|++++. |. +.. ++|++|+|++|++++ ++ . +..+++|+.|+|++|++
T Consensus 90 L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~-~------------------------l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 90 LSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-TD-S------------------------LIHLKNLEILSIRNNKL 140 (263)
T ss_dssp EECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-SG-G------------------------GTTCTTCCEEECTTSCC
T ss_pred EECCCCccCCc-Cc-ccc-CcccEEEccCCccCC-Ch-h------------------------hcCcccccEEECCCCcC
Confidence 88888888775 33 222 888888888888874 32 2 34488899999999998
Q ss_pred CCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCC
Q 002346 248 TGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYP 299 (933)
Q Consensus 248 ~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 299 (933)
++. +.+..+++|+.|+|++|++++. ..+..+++|+.|++++|++++...
T Consensus 141 ~~~-~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 141 KSI-VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp CBC-GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred CCC-hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 876 4688889999999999999865 678888999999999999887643
No 367
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=9.5e-21 Score=221.64 Aligned_cols=203 Identities=18% Similarity=0.169 Sum_probs=128.5
Q ss_pred CCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcc-------------cCCCCChhhcCCCCCCEEE-ccCCcCC
Q 002346 135 GLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNAN-------------IFGLIPDFFDSFSNLQNLR-LSYNNFT 200 (933)
Q Consensus 135 ~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~N~l~ 200 (933)
.+++|+.|+|++|++.. +|..++++++|+.|++++|. +.+.+|..++.+++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~~---Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTV---LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp TTTTSSSCCCCHHHHHH---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cCccceeccCChhhHHh---hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 34555555555555543 55566666666666665543 4566677777777777777 6666543
Q ss_pred CCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccC
Q 002346 201 GSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVIS 280 (933)
Q Consensus 201 ~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~ 280 (933)
.+..+.+.+|.+.... ...|+.|+|++|+|++. |.+..+++|+.|+|++|+|+ .+|..|+.
T Consensus 424 ----------~L~~l~l~~n~i~~l~-------~~~L~~L~Ls~n~l~~l-p~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKME-------YADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHH-------HTTCSEEECTTSCCSSC-CCGGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ----------hhhhhhhhcccccccC-------ccCceEEEecCCCCCCC-cCccccccCcEeecCccccc-ccchhhhc
Confidence 3344444444432111 12477788888888774 34777788888888888887 67777777
Q ss_pred CCCCCEEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCC
Q 002346 281 LPALLNISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWP 360 (933)
Q Consensus 281 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p 360 (933)
+++|+.|+|++|+|++ +|
T Consensus 485 l~~L~~L~Ls~N~l~~--------------------------------------------------------------lp 502 (567)
T 1dce_A 485 LRCLEVLQASDNALEN--------------------------------------------------------------VD 502 (567)
T ss_dssp CTTCCEEECCSSCCCC--------------------------------------------------------------CG
T ss_pred CCCCCEEECCCCCCCC--------------------------------------------------------------Cc
Confidence 8888877777777764 12
Q ss_pred ccccCCCceeEEEccCccccCcC-chhhcCcccCCeEecccCcccCCCCcc---cCCCCCcCEEec
Q 002346 361 FVTCSQGRIITINLANKLLAGNI-SPAYANLTSLKNLYLQQNNLTGPIPDG---LTKLASLQNLDV 422 (933)
Q Consensus 361 ~~~~~l~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~L~~N~l~g~~p~~---~~~l~~L~~l~l 422 (933)
.++.+++|+.|+|++|+|++.+ |..|+.|++|+.|+|++|+|++..|.. +..+++|+.||+
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 3445566777777777777665 777777777777777777777554421 223666666653
No 368
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=2.9e-18 Score=190.36 Aligned_cols=153 Identities=21% Similarity=0.305 Sum_probs=136.6
Q ss_pred CCCCCCccccceEeCCC----------CCEEEEEecCCCCccccCcccc-CCcccceeecccccccccCC-CccCcCcCc
Q 002346 49 TSSTGYCEWTGINCDNS----------NRVTTISLAKSGLSGTLSPEIS-SLTQLETLSFQMNNIAGAIP-SLANATSLQ 116 (933)
Q Consensus 49 ~~~~~~C~w~gv~c~~~----------~~v~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~ 116 (933)
.+..+.|.|..|.|.+. ..++.|+|++|+|++..+..+. .+++|++|+|++|+|+++.+ .|.++++|+
T Consensus 12 Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 12 CPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 45667799999999752 3588999999999988888887 99999999999999999988 799999999
Q ss_pred eeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhh---cCCCCCCEEE
Q 002346 117 DIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFF---DSFSNLQNLR 193 (933)
Q Consensus 117 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~ 193 (933)
+|+|++|+|+.+++..|.++++|++|+|++|++.. ..|..|..+++|+.|+|++|+|++..+..| ..+++|++|+
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV--VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE--ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 99999999999999999999999999999999998 457899999999999999999999877766 6799999999
Q ss_pred ccCCcCCCCCC
Q 002346 194 LSYNNFTGSLP 204 (933)
Q Consensus 194 L~~N~l~~~~p 204 (933)
|++|+|+ .+|
T Consensus 170 L~~N~l~-~l~ 179 (361)
T 2xot_A 170 LSSNKLK-KLP 179 (361)
T ss_dssp CCSSCCC-CCC
T ss_pred CCCCCCC-ccC
Confidence 9999999 454
No 369
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=4.4e-18 Score=171.48 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=107.9
Q ss_pred ccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCC
Q 002346 109 LANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSN 188 (933)
Q Consensus 109 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 188 (933)
...+++|++|++++|.++.++ .+..+++|++|+|++|.+.. +..+..+++|++|++++|++++..+..|+.+++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN----YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC----CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred hhhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc----chhhhcCCCCCEEEeECCccCcccChhhcCCCC
Confidence 355667777777777777666 36777777777777775544 346777777777777777777766777777777
Q ss_pred CCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCC
Q 002346 189 LQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDN 268 (933)
Q Consensus 189 L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N 268 (933)
|++|+|++|++++..|..+. .+++|+.|+|++|.+.+.++.+..+++|+.|++++|
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~------------------------~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKIN------------------------TLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHT------------------------TCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTB
T ss_pred CCEEEecCCccCcHhHHHHh------------------------hCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCC
Confidence 88888888777755555443 377777778877773333456777778888888888
Q ss_pred cccccCcccccCCCCCCEEEccCccCcc
Q 002346 269 QLTGVVPASVISLPALLNISLQNNKLQG 296 (933)
Q Consensus 269 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 296 (933)
++++ ++ .+..+++|+.|++++|++.+
T Consensus 170 ~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 170 GVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 8774 33 67777888888888887754
No 370
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=6e-20 Score=214.83 Aligned_cols=193 Identities=17% Similarity=0.184 Sum_probs=155.5
Q ss_pred cCCcccceeecccccccccCCCccCcCcCceecccccc-------------ccCCCCCcccCCCCCCEEE-ccCCCCCCC
Q 002346 87 SSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNN-------------FTSVPTGCFDGLTNLQVLS-LSDNPNLAP 152 (933)
Q Consensus 87 ~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~-------------l~~~~~~~~~~l~~L~~L~-Ls~N~~~~~ 152 (933)
..+++|+.|+|++|.|+.+++.++++++|+.|++++|. +.+.++..++.+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~- 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD- 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-
Confidence 67889999999999998666689999999999998775 4566666788888888888 56553322
Q ss_pred CCCCc------cccC--CccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCc
Q 002346 153 WPFPN------ELTK--STSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGL 224 (933)
Q Consensus 153 ~~~p~------~~~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~ 224 (933)
++. .+.. ...|+.|+|++|+|++. |. |+.+++|++|+|++|+|+ .+|..++.
T Consensus 425 --L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~--------------- 484 (567)
T 1dce_A 425 --LRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAA--------------- 484 (567)
T ss_dssp --HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGG---------------
T ss_pred --hhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhc---------------
Confidence 111 1111 12588999999999884 65 889999999999999998 88877655
Q ss_pred ccccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccC-cccccCCCCCCEEEccCccCccCCCCC--
Q 002346 225 SGTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVV-PASVISLPALLNISLQNNKLQGPYPLF-- 301 (933)
Q Consensus 225 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~-- 301 (933)
+++|+.|+|++|+|+++ |.+..+++|+.|+|++|+|++.+ |..+..+++|+.|+|++|++++.+|..
T Consensus 485 ---------l~~L~~L~Ls~N~l~~l-p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 554 (567)
T 1dce_A 485 ---------LRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554 (567)
T ss_dssp ---------CTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred ---------CCCCCEEECCCCCCCCC-cccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence 89999999999999985 58999999999999999999877 999999999999999999999987753
Q ss_pred ----CCCccEEec
Q 002346 302 ----PSKVQKVSL 310 (933)
Q Consensus 302 ----~~~l~~L~l 310 (933)
+.+|+.|+|
T Consensus 555 l~~~lp~L~~L~l 567 (567)
T 1dce_A 555 LAEMLPSVSSILT 567 (567)
T ss_dssp HHHHCTTCSEEEC
T ss_pred HHHHCcccCccCC
Confidence 356666653
No 371
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=9.1e-18 Score=169.15 Aligned_cols=155 Identities=17% Similarity=0.239 Sum_probs=125.0
Q ss_pred ccCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccC
Q 002346 86 ISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSL 165 (933)
Q Consensus 86 ~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L 165 (933)
.+.+++|++|++++|.|+.. |.+..+++|++|++++|.++.++ .+..+++|++|+|++|++.. ..+..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTS--DKIPNLSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCC-TTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBG--GGSCCCTTCTTC
T ss_pred hhhcCCccEEeccCCCccCh-HHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCc--ccChhhcCCCCC
Confidence 36677888888888888843 47888888888888888777664 57888999999999998876 456788899999
Q ss_pred CeeeccCcccCCCCChhhcCCCCCCEEEccCCc-CCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecC
Q 002346 166 TTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNN-FTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHK 244 (933)
Q Consensus 166 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~ 244 (933)
++|+|++|++++..|..++.+++|++|+|++|+ ++ .+| .+ ..+++|+.|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l------------------------~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PL------------------------KTLPELKSLNIQF 168 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GG------------------------GGCSSCCEEECTT
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hh------------------------cCCCCCCEEECCC
Confidence 999999999988888899999999999999998 55 555 33 3488999999999
Q ss_pred CccCCCCCCCCCCCCCCEEEccCCcccc
Q 002346 245 NQFTGPIPDLSKCESLFDLSLRDNQLTG 272 (933)
Q Consensus 245 N~l~~~~~~~~~~~~L~~L~L~~N~l~~ 272 (933)
|++++.. .+..+++|+.|++++|++.+
T Consensus 169 n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 169 DGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp BCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred CCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 9998754 78889999999999998864
No 372
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.3e-17 Score=176.07 Aligned_cols=167 Identities=19% Similarity=0.279 Sum_probs=143.5
Q ss_pred EEEEEecCCCCccccCccccCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCC
Q 002346 68 VTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDN 147 (933)
Q Consensus 68 v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 147 (933)
++.+++.++++++.. .+..+++|++|++++|.|+.+ +.+..+++|++|+|++|+|+++++ +..+++|++|+|++|
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-hHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 456677888887543 578999999999999999864 478899999999999999999887 899999999999999
Q ss_pred CCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccc
Q 002346 148 PNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGT 227 (933)
Q Consensus 148 ~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~ 227 (933)
++.. +|.... ++|+.|+|++|++++. ..+..+++|++|+|++|++++ ++ .+
T Consensus 96 ~l~~---l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l-------------------- 146 (263)
T 1xeu_A 96 RLKN---LNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-ML-------------------- 146 (263)
T ss_dssp CCSC---CTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GG--------------------
T ss_pred ccCC---cCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HH--------------------
Confidence 9988 443333 9999999999999885 469999999999999999984 33 33
Q ss_pred cccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCccccc
Q 002346 228 LDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGV 273 (933)
Q Consensus 228 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~ 273 (933)
..+++|+.|+|++|++++. +.+..+++|+.|+|++|++++.
T Consensus 147 ----~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 147 ----GFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ----GGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred ----ccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 3489999999999999987 7789999999999999999855
No 373
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=1.6e-17 Score=166.52 Aligned_cols=131 Identities=21% Similarity=0.315 Sum_probs=117.4
Q ss_pred EEEecCCCCccccCccccCCcccceeecccccccccCCC--ccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCC
Q 002346 70 TISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIPS--LANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDN 147 (933)
Q Consensus 70 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 147 (933)
.|++++++|+ .+|..+.. +|++|+|++|.|+++++. |..+++|++|+|++|+|+++++..|.++++|++|+|++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4555667775 67776654 999999999999998874 899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCc
Q 002346 148 PNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPA 205 (933)
Q Consensus 148 ~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 205 (933)
++.. ..+..+.++++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+-
T Consensus 89 ~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 89 KIKE--ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCCE--ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred cCCc--cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 9998 5567799999999999999999999999999999999999999999977654
No 374
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=1.1e-18 Score=210.81 Aligned_cols=161 Identities=22% Similarity=0.218 Sum_probs=79.7
Q ss_pred cccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeee
Q 002346 90 TQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLY 169 (933)
Q Consensus 90 ~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~ 169 (933)
+.++.|+|..|.+..... ..|+.++|++|.|.+ ++++.|++.. .+..+..++.|+.|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~-----~~l~~l~Ls~~~i~~--------------~~~~~n~~~~---~~~~~~~l~~L~~L~ 230 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ-----ALLQHKKLSQYSIDE--------------DDDIENRMVM---PKDSKYDDQLWHALD 230 (727)
T ss_dssp -----------------------------------------------------------------------CCCCCCEEE
T ss_pred CccceEEeeCCCCCcchh-----hHhhcCccCcccccC--------------ccccccceec---ChhhhccCCCCcEEE
Confidence 345566666666554322 223444455554433 2334444443 466677777777777
Q ss_pred ccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCC
Q 002346 170 MDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTG 249 (933)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~ 249 (933)
|++|.+. .+|..+..+++|++|+|++|+|+ .+|..|.. +++|+.|+|++|+|+.
T Consensus 231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------------------l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN------------------------LSNLRVLDLSHNRLTS 284 (727)
T ss_dssp CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG------------------------GTTCCEEECTTSCCSS
T ss_pred CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC------------------------CCCCCEEeCcCCcCCc
Confidence 7777776 44555557777777777777777 67766544 6777777777777775
Q ss_pred CCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCC
Q 002346 250 PIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYP 299 (933)
Q Consensus 250 ~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 299 (933)
++..+..+++|++|+|++|.|+ .+|..|+.+++|+.|+|++|+|++.+|
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence 5445777777777777777776 667667777777777777777776544
No 375
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=2.9e-19 Score=213.06 Aligned_cols=348 Identities=14% Similarity=0.091 Sum_probs=204.5
Q ss_pred CCEEEEEecCCCCcc---ccC------------ccccCCcccceeecccccccccCC-Ccc-CcCcCceeccccc-cccC
Q 002346 66 NRVTTISLAKSGLSG---TLS------------PEISSLTQLETLSFQMNNIAGAIP-SLA-NATSLQDIYLDNN-NFTS 127 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~---~~~------------~~~~~l~~L~~L~l~~N~l~~~~p-~~~-~l~~L~~L~Ls~N-~l~~ 127 (933)
.+++.|+|.++.... ..| .....+++|++|+|++|.+++..+ .+. .+++|++|+|++| .++.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 467888888765321 111 123467889999999998887655 454 6889999999988 5554
Q ss_pred C-CCCcccCCCCCCEEEccCCCCCCCCC--CCccccCCccCCeeeccCcccCCCCCh----hhcCCCCCCEEEccCC-cC
Q 002346 128 V-PTGCFDGLTNLQVLSLSDNPNLAPWP--FPNELTKSTSLTTLYMDNANIFGLIPD----FFDSFSNLQNLRLSYN-NF 199 (933)
Q Consensus 128 ~-~~~~~~~l~~L~~L~Ls~N~~~~~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~N-~l 199 (933)
. ....+.++++|++|+|++|.+..... ++.....+++|+.|++++|. ...... .+..+++|++|+|++| .+
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 2 22234478899999999998665211 22333467799999999886 222122 2345689999999988 33
Q ss_pred CCCCCccccc-cccchhhcccccC-----------------------------CcccccccccCCccCcEEEecCCccCC
Q 002346 200 TGSLPASFAK-SDIQNLWMNDQQL-----------------------------GLSGTLDVLSGMTQLRQVWLHKNQFTG 249 (933)
Q Consensus 200 ~~~~p~~~~~-~~l~~l~l~~n~~-----------------------------~~~~~~~~l~~l~~L~~L~L~~N~l~~ 249 (933)
+ .+|..+.. ..|++|.+..+.. ........+..+++|+.|+|++|.+++
T Consensus 225 ~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~ 303 (594)
T 2p1m_B 225 E-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303 (594)
T ss_dssp H-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred H-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH
Confidence 3 34444433 4566665443321 000011112245677777777777553
Q ss_pred CCC-C-CCCCCCCCEEEccCCccccc-CcccccCCCCCCEEEccC---------ccCccCCC----CCCCCccEEeccCC
Q 002346 250 PIP-D-LSKCESLFDLSLRDNQLTGV-VPASVISLPALLNISLQN---------NKLQGPYP----LFPSKVQKVSLDHN 313 (933)
Q Consensus 250 ~~~-~-~~~~~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~---------N~l~~~~p----~~~~~l~~L~l~~n 313 (933)
... . +..+++|+.|++++| ++.. ++.....+++|++|+|++ |.+++... ....+|+.|.+..|
T Consensus 304 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~ 382 (594)
T 2p1m_B 304 YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR 382 (594)
T ss_dssp HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC
Confidence 221 1 446677777777766 3322 222233467777777733 34432111 11346777766666
Q ss_pred cCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCC---CCCCCCCCc------cccCCCceeEEEccCccccCcCc
Q 002346 314 NFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEG---NNACDGWPF------VTCSQGRIITINLANKLLAGNIS 384 (933)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~p~------~~~~l~~L~~L~Ls~N~l~g~~p 384 (933)
++... ....+.......+.+...+.+ ++..+..|. .+..+++|+.|+|++ .+++..+
T Consensus 383 ~l~~~-------------~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 383 QMTNA-------------ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp CCCHH-------------HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred CcCHH-------------HHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 66331 111111112222333332212 233343332 255678899999977 7776666
Q ss_pred hhhcC-cccCCeEecccCcccCCCCccc-CCCCCcCEEeccCCcCccc
Q 002346 385 PAYAN-LTSLKNLYLQQNNLTGPIPDGL-TKLASLQNLDVSNNNLSGK 430 (933)
Q Consensus 385 ~~~~~-l~~L~~L~L~~N~l~g~~p~~~-~~l~~L~~l~ls~N~l~g~ 430 (933)
..++. +++|+.|+|++|++++..+..+ ..+++|+.|+|++|++++.
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 66665 8889999999999876655555 5688899999999988543
No 376
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=3.5e-16 Score=154.62 Aligned_cols=138 Identities=28% Similarity=0.420 Sum_probs=119.0
Q ss_pred CCCCccccceEeCCCCCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCC
Q 002346 51 STGYCEWTGINCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVP 129 (933)
Q Consensus 51 ~~~~C~w~gv~c~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~ 129 (933)
..+.|.|++|.|.. ++++ .+|..+ .++|++|++++|++++.++ .|..+++|++|+|++|+|++++
T Consensus 3 ~~C~C~~~~l~~~~-----------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (177)
T 2o6r_A 3 SRCSCSGTEIRCNS-----------KGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP 68 (177)
T ss_dssp TTCEEETTEEECCS-----------SCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCCEeCCCEEEecC-----------CCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC
Confidence 44668898888864 3554 345433 3689999999999998887 5789999999999999999999
Q ss_pred CCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCC
Q 002346 130 TGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLP 204 (933)
Q Consensus 130 ~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 204 (933)
+..|..+++|++|+|++|++.. ..+..+..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|
T Consensus 69 ~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 69 DGVFDKLTKLTILYLHENKLQS--LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhHccCCCccCEEECCCCCccc--cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999999999999999998 445568999999999999999998888888999999999999999997665
No 377
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=1.2e-16 Score=159.97 Aligned_cols=111 Identities=19% Similarity=0.300 Sum_probs=64.8
Q ss_pred ceeecccccccccCCCccCcCcCceeccccccccCCCCC-cccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeecc
Q 002346 93 ETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTG-CFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMD 171 (933)
Q Consensus 93 ~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~ 171 (933)
+.|++++|+|+.++..+.. +|++|+|++|+|+++++. .|..+++|++|+|++|++++ ..|..|.++++|++|+|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG--IEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC--cCHhHcCCcccCCEEECC
Confidence 5666666666544433332 666666666666666553 35666666666666666655 345555566666666666
Q ss_pred CcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccc
Q 002346 172 NANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASF 207 (933)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 207 (933)
+|+|++..+..|..+++|++|+|++|+|++..|..|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 122 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh
Confidence 666655555555555666666666666655445443
No 378
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.64 E-value=1e-16 Score=174.37 Aligned_cols=145 Identities=15% Similarity=0.157 Sum_probs=103.8
Q ss_pred HHHHHhcC---CccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCC------------chhHH--------HHHHHHH
Q 002346 575 VLRQVTDN---FSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMG------------NKGLS--------EFQAEIA 631 (933)
Q Consensus 575 ~l~~~~~~---~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~------------~~~~~--------~~~~E~~ 631 (933)
.+....++ |++.+.||+|+||.||+|...+|+.||||+++....+ ..... ...+|..
T Consensus 86 AL~~L~~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~ 165 (397)
T 4gyi_A 86 ALHTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFA 165 (397)
T ss_dssp HHHHHHHTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 34444444 8999999999999999998889999999987643211 00111 1234566
Q ss_pred HHHhcCCCcce--eEEeEeeeCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeE
Q 002346 632 VLTKVRHRHLV--ALLGYCINGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFI 709 (933)
Q Consensus 632 ~l~~l~h~niv--~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iv 709 (933)
.|.++.+.++. ..+++ ...++||||++|++|.+.... .....++.|++.++.|||+ .+||
T Consensus 166 nL~rL~~~gv~vp~p~~~----~~~~LVME~i~G~~L~~l~~~-----------~~~~~l~~qll~~l~~lH~---~gIV 227 (397)
T 4gyi_A 166 FMKALYEEGFPVPEPIAQ----SRHTIVMSLVDALPMRQVSSV-----------PDPASLYADLIALILRLAK---HGLI 227 (397)
T ss_dssp HHHHHHHTTCSCCCEEEE----ETTEEEEECCSCEEGGGCCCC-----------SCHHHHHHHHHHHHHHHHH---TTEE
T ss_pred HHHHHHhcCCCCCeeeec----cCceEEEEecCCccHhhhccc-----------HHHHHHHHHHHHHHHHHHH---CCCc
Confidence 66666444332 22222 223799999999888665411 1245688999999999998 8999
Q ss_pred ecCCCCCcEEecCCC----------cEEEecccccccC
Q 002346 710 HRDLKPSNILIGDDM----------RAKVADFGLVKNA 737 (933)
Q Consensus 710 H~Dik~~Nill~~~~----------~~kl~DfGla~~~ 737 (933)
||||||.|||+++++ .+.|+||+-+...
T Consensus 228 HrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~ 265 (397)
T 4gyi_A 228 HGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVSM 265 (397)
T ss_dssp CSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEET
T ss_pred CCCCCHHHEEEeCCCCcccccccccceEEEEeCCcccC
Confidence 999999999998876 3899999976643
No 379
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=3.9e-16 Score=152.77 Aligned_cols=136 Identities=21% Similarity=0.207 Sum_probs=123.2
Q ss_pred CCEEEEEecCCCCc-cccCccccCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEc
Q 002346 66 NRVTTISLAKSGLS-GTLSPEISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSL 144 (933)
Q Consensus 66 ~~v~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 144 (933)
.+++.|++++|+++ +.+|..+..+++|++|+|++|.|++. +.+..+++|++|+|++|++++..+..+..+++|++|+|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 57899999999998 78899899999999999999999987 88999999999999999999977777888999999999
Q ss_pred cCCCCCCCCCCC--ccccCCccCCeeeccCcccCCCCC---hhhcCCCCCCEEEccCCcCCCCCCcc
Q 002346 145 SDNPNLAPWPFP--NELTKSTSLTTLYMDNANIFGLIP---DFFDSFSNLQNLRLSYNNFTGSLPAS 206 (933)
Q Consensus 145 s~N~~~~~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p~~ 206 (933)
++|++.. +| ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. .+|.+
T Consensus 103 s~N~l~~---~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 103 SGNKLKD---ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp BSSSCCS---SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred cCCccCc---chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 9999987 44 788999999999999999998876 68999999999999999998 66654
No 380
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=152.92 Aligned_cols=128 Identities=23% Similarity=0.267 Sum_probs=113.7
Q ss_pred EEEecCCCCccccCccccCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCC
Q 002346 70 TISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPN 149 (933)
Q Consensus 70 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~ 149 (933)
.+++++++|+ .+|..+. ++|++|+|++|+|+.++..|.++++|++|+|++|+|+++++..|.++++|++|+|++|++
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4555667777 5666554 689999999999996656899999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCC
Q 002346 150 LAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGS 202 (933)
Q Consensus 150 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 202 (933)
.. ..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|++...
T Consensus 91 ~~--i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 91 RC--IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CB--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CE--eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 98 5567899999999999999999998888899999999999999999853
No 381
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2.3e-15 Score=147.21 Aligned_cols=83 Identities=25% Similarity=0.367 Sum_probs=49.8
Q ss_pred CcCceecccccccc--CCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCC
Q 002346 113 TSLQDIYLDNNNFT--SVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQ 190 (933)
Q Consensus 113 ~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 190 (933)
++|++|+|++|.++ .++. .+..+++|++|+|++|.+.. + ..+..+++|++|+|++|++.+.+|..+..+++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~---~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLIS---V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCC---C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred ccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCC---h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 56677777777766 4433 35666666666666666555 2 4555566666666666666555555555555666
Q ss_pred EEEccCCcCC
Q 002346 191 NLRLSYNNFT 200 (933)
Q Consensus 191 ~L~L~~N~l~ 200 (933)
+|+|++|+++
T Consensus 99 ~L~Ls~N~l~ 108 (168)
T 2ell_A 99 HLNLSGNKLK 108 (168)
T ss_dssp EEECBSSSCC
T ss_pred EEeccCCccC
Confidence 6666666555
No 382
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=8.7e-16 Score=168.13 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=45.2
Q ss_pred cccCCCcee-EEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEec
Q 002346 362 VTCSQGRII-TINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDV 422 (933)
Q Consensus 362 ~~~~l~~L~-~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~l 422 (933)
.+..+++|+ .|+|.+ .++..-+..|.++++|+.|+|++|+++..-+.+|.++++|+.++.
T Consensus 268 aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 268 VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 344556777 788877 666556678888888888888888888666778888888888763
No 383
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=144.90 Aligned_cols=80 Identities=26% Similarity=0.352 Sum_probs=40.8
Q ss_pred ceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEcc
Q 002346 116 QDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLS 195 (933)
Q Consensus 116 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 195 (933)
+++++++|+|+.+|...+ ++|++|+|++|++.. +|..+.++++|+.|+|++|+|++..+..|..+++|++|+|+
T Consensus 13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~i~~---ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGNQFTL---VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCCEEECCSSCCCS---CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCcCCCCCC---CCCCEEECCCCcCch---hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 345555555555544321 345555555555543 44455555555555555555555555555555555555555
Q ss_pred CCcCCC
Q 002346 196 YNNFTG 201 (933)
Q Consensus 196 ~N~l~~ 201 (933)
+|+|++
T Consensus 87 ~N~l~~ 92 (193)
T 2wfh_A 87 YNRLRC 92 (193)
T ss_dssp SSCCCB
T ss_pred CCccCE
Confidence 555553
No 384
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=1.8e-15 Score=144.81 Aligned_cols=129 Identities=22% Similarity=0.193 Sum_probs=96.3
Q ss_pred CCEEEEEecCCCCc-cccCccccCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEc
Q 002346 66 NRVTTISLAKSGLS-GTLSPEISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSL 144 (933)
Q Consensus 66 ~~v~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 144 (933)
.+++.|++++|+++ +.+|..+..+++|++|++++|.|++. +.+..+++|++|+|++|.+++..+..+..+++|++|+|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 35778888888887 67777778888888888888888776 66777888888888888888755556667788888888
Q ss_pred cCCCCCCCCCCCccccCCccCCeeeccCcccCCCCC---hhhcCCCCCCEEEccC
Q 002346 145 SDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIP---DFFDSFSNLQNLRLSY 196 (933)
Q Consensus 145 s~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~L~~ 196 (933)
++|++... +.+..+..+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus 96 s~N~i~~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDL-STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSH-HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCCh-HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88877661 122667778888888888888877765 5677778888887753
No 385
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.7e-14 Score=142.30 Aligned_cols=133 Identities=28% Similarity=0.480 Sum_probs=113.5
Q ss_pred cceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeecc
Q 002346 92 LETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMD 171 (933)
Q Consensus 92 L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~ 171 (933)
.+.+++++|+++.++..+. ++|++|+|++|+++++++..|..+++|++|+|++|++.. ..+..+..+++|++|+|+
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE--eChhHccCCCccCEEECC
Confidence 5789999999987665443 789999999999999999999999999999999999987 344567999999999999
Q ss_pred CcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCC
Q 002346 172 NANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPI 251 (933)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 251 (933)
+|++++..+..|..+++|++|+|++|++++ +|..+ +..+++|+.|+|++|.+.+..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~-----------------------~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGI-----------------------FDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTT-----------------------TTTCTTCCEEECCSSCBCCCH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceE-eCHHH-----------------------hcCCcccCEEEecCCCeeccC
Confidence 999999988889999999999999999994 44432 234788999999999888755
Q ss_pred C
Q 002346 252 P 252 (933)
Q Consensus 252 ~ 252 (933)
+
T Consensus 141 ~ 141 (177)
T 2o6r_A 141 P 141 (177)
T ss_dssp H
T ss_pred c
Confidence 4
No 386
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=3.4e-15 Score=142.87 Aligned_cols=85 Identities=22% Similarity=0.296 Sum_probs=49.0
Q ss_pred cCcCceecccccccc-CCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCC
Q 002346 112 ATSLQDIYLDNNNFT-SVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQ 190 (933)
Q Consensus 112 l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 190 (933)
.++|++|++++|.++ +..+..+..+++|++|+|++|.+.. + ..+..+++|++|+|++|.+++.+|..+..+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC---C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC---c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 356677777777766 2222345666666666666666655 2 4455555555555555555555555555555555
Q ss_pred EEEccCCcCC
Q 002346 191 NLRLSYNNFT 200 (933)
Q Consensus 191 ~L~L~~N~l~ 200 (933)
+|+|++|+++
T Consensus 92 ~L~ls~N~i~ 101 (149)
T 2je0_A 92 HLNLSGNKIK 101 (149)
T ss_dssp EEECTTSCCC
T ss_pred EEECCCCcCC
Confidence 5555555555
No 387
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=6.4e-15 Score=161.19 Aligned_cols=237 Identities=14% Similarity=0.086 Sum_probs=133.1
Q ss_pred Ccccceeeccccccc--ccCCCccCcCcCceeccccccccCCCCCcccC--------CCCCCEEEccCCCCCCCCCCCcc
Q 002346 89 LTQLETLSFQMNNIA--GAIPSLANATSLQDIYLDNNNFTSVPTGCFDG--------LTNLQVLSLSDNPNLAPWPFPNE 158 (933)
Q Consensus 89 l~~L~~L~l~~N~l~--~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------l~~L~~L~Ls~N~~~~~~~~p~~ 158 (933)
+++|+.|||++|+|. ...+ +.++.++.+.+..| .++..+|.+ +++|+.|+|.+ .+.. .-+.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~--~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~--I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKA--GTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKN--IEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESS--SSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCE--ECTTT
T ss_pred hccCeEEecCcceeEEecCcc--cccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccc--hhHHH
Confidence 566777777777766 2111 11111233333333 455566666 67777777766 5554 23456
Q ss_pred ccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcC----CCCCCccccc-------------------------
Q 002346 159 LTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNF----TGSLPASFAK------------------------- 209 (933)
Q Consensus 159 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l----~~~~p~~~~~------------------------- 209 (933)
|.++++|+.|++++|.+..+.+..|..+.++..|.+..+.. ...-...|..
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 66677777777777766666666666666665555544221 1011111110
Q ss_pred --cccchhhcccccCCcccccccc-cCCccCcEEEecCCccCCCCCC-CCCCCCCCEEEccCCcccccCcccccCCCCCC
Q 002346 210 --SDIQNLWMNDQQLGLSGTLDVL-SGMTQLRQVWLHKNQFTGPIPD-LSKCESLFDLSLRDNQLTGVVPASVISLPALL 285 (933)
Q Consensus 210 --~~l~~l~l~~n~~~~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~-~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 285 (933)
..+..+.+.++ +. ......+ ..+++|+.|+|++|+++.+.+. |.+|.+|+.|+|.+| ++...+.+|.++++|+
T Consensus 200 ~~~~~~~l~~~~~-l~-~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 200 QPRDINFLTIEGK-LD-NADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp CGGGCSEEEEEEC-CC-HHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred CccccceEEEeee-ec-HHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence 01111111110 00 0000001 1256677777777777655543 667777777777776 6655556677777777
Q ss_pred -EEEccCccCccCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCcccc
Q 002346 286 -NISLQNNKLQGPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTC 364 (933)
Q Consensus 286 -~L~Ls~N~l~~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~ 364 (933)
.|+|.+ .++... +..+.
T Consensus 277 ~~l~l~~-~l~~I~-------------------------------------------------------------~~aF~ 294 (329)
T 3sb4_A 277 GTLELPA-SVTAIE-------------------------------------------------------------FGAFM 294 (329)
T ss_dssp EEEEECT-TCCEEC-------------------------------------------------------------TTTTT
T ss_pred EEEEEcc-cceEEc-------------------------------------------------------------hhhhh
Confidence 776665 333211 23456
Q ss_pred CCCceeEEEccCccccCcCchhhcCcccCCeEec
Q 002346 365 SQGRIITINLANKLLAGNISPAYANLTSLKNLYL 398 (933)
Q Consensus 365 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L 398 (933)
.+++|+.|+|++|+++..-+..|.++++|+.|+.
T Consensus 295 ~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 295 GCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 6789999999999999888889999999999874
No 388
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=2.2e-14 Score=141.42 Aligned_cols=128 Identities=16% Similarity=0.227 Sum_probs=111.5
Q ss_pred CCEEEEEecCCCCccccCccccCCc-ccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEc
Q 002346 66 NRVTTISLAKSGLSGTLSPEISSLT-QLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSL 144 (933)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 144 (933)
..++.|++++|+++. ++. +..+. +|++|+|++|.|++. +.+..+++|++|+|++|.|+++++..|..+++|++|+|
T Consensus 19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 468999999999984 554 55555 999999999999987 78999999999999999999998887899999999999
Q ss_pred cCCCCCCCCCCCc--cccCCccCCeeeccCcccCCCCCh----hhcCCCCCCEEEccCCcCC
Q 002346 145 SDNPNLAPWPFPN--ELTKSTSLTTLYMDNANIFGLIPD----FFDSFSNLQNLRLSYNNFT 200 (933)
Q Consensus 145 s~N~~~~~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~N~l~ 200 (933)
++|++.. +|. .+..+++|+.|++++|.+... |. .+..+++|++|++++|.+.
T Consensus 96 ~~N~i~~---~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 96 TNNSLVE---LGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSCCCCC---GGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCcCCc---chhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999976 665 788999999999999999765 55 4889999999999999876
No 389
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=1.6e-14 Score=142.47 Aligned_cols=86 Identities=17% Similarity=0.265 Sum_probs=42.3
Q ss_pred ccCcCcCceeccccccccCCCCCcccCCC-CCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCC
Q 002346 109 LANATSLQDIYLDNNNFTSVPTGCFDGLT-NLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFS 187 (933)
Q Consensus 109 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 187 (933)
+.++.+|++|+|++|+++.++. +..+. +|++|+|++|.+.. + ..+..+++|++|+|++|++++..+..|..++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~---~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRK---L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCE---E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred cCCcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCc---c-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 4444555555555555554421 22222 55555555555544 1 3444455555555555555544444445555
Q ss_pred CCCEEEccCCcCC
Q 002346 188 NLQNLRLSYNNFT 200 (933)
Q Consensus 188 ~L~~L~L~~N~l~ 200 (933)
+|++|+|++|+++
T Consensus 89 ~L~~L~L~~N~i~ 101 (176)
T 1a9n_A 89 DLTELILTNNSLV 101 (176)
T ss_dssp TCCEEECCSCCCC
T ss_pred CCCEEECCCCcCC
Confidence 5555555555553
No 390
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.50 E-value=3.9e-13 Score=150.17 Aligned_cols=171 Identities=11% Similarity=0.189 Sum_probs=112.5
Q ss_pred CcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCe
Q 002346 89 LTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTT 167 (933)
Q Consensus 89 l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~ 167 (933)
...++.+.+.+ .++.+.. .|.+. +|+.+.|.+| ++.|...+|.++ +|+.+.|.. .+.. .-+.+|.++++|+.
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~--I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQ--LKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCE--ECSSTTTTCTTCCE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccE--ehHHHhhCcccCCe
Confidence 45666666654 3554544 56664 6888888765 777888888774 688888875 4444 33467788888888
Q ss_pred eeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCcc
Q 002346 168 LYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQF 247 (933)
Q Consensus 168 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l 247 (933)
++|.+|++..+....|. .++|+.+.|..| ++ .++.. +|.++++|+.|+|..| +
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~-----------------------aF~~~~~L~~l~l~~~-l 237 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQ-----------------------AFLKTSQLKTIEIPEN-V 237 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTT-----------------------TTTTCTTCCCEECCTT-C
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhh-----------------------HhhCCCCCCEEecCCC-c
Confidence 88888888777667776 478888888744 55 33322 2344677777777664 4
Q ss_pred CCCCCC-CCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCc
Q 002346 248 TGPIPD-LSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQ 295 (933)
Q Consensus 248 ~~~~~~-~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 295 (933)
+.+... |.+ .+|+.+.| .|.++.....+|.++++|+.+++.+|.+.
T Consensus 238 ~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 238 STIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp CEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred cCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCcccc
Confidence 433332 444 67777777 34466455667777777777777777654
No 391
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=3.6e-16 Score=157.59 Aligned_cols=133 Identities=24% Similarity=0.294 Sum_probs=115.4
Q ss_pred CEEEEEecCCCCccccCc------cccCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCC
Q 002346 67 RVTTISLAKSGLSGTLSP------EISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQ 140 (933)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~------~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 140 (933)
.++.++++.+.+.|.+|. .+..+++|++|+|++|.|+++ |.+..+++|++|+|++|.|+.++. .+..+++|+
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~ 96 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIEN-LDAVADTLE 96 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-CCHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCS
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-cccccCCCCCEEECCCCCcccccc-hhhcCCcCC
Confidence 566667777777777766 899999999999999999984 589999999999999999998875 577789999
Q ss_pred EEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCC-hhhcCCCCCCEEEccCCcCCCCCCc
Q 002346 141 VLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIP-DFFDSFSNLQNLRLSYNNFTGSLPA 205 (933)
Q Consensus 141 ~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~ 205 (933)
+|+|++|++.. +| .+..+++|++|+|++|++.+..+ ..+..+++|++|++++|++++.+|.
T Consensus 97 ~L~L~~N~l~~---l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 97 ELWISYNQIAS---LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp EEEEEEEECCC---HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred EEECcCCcCCc---CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 99999999988 55 68999999999999999987643 5789999999999999999876654
No 392
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=6.4e-16 Score=155.69 Aligned_cols=160 Identities=21% Similarity=0.272 Sum_probs=87.0
Q ss_pred ccCCcccceeecccccccccCCCccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccC
Q 002346 86 ISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSL 165 (933)
Q Consensus 86 ~~~l~~L~~L~l~~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L 165 (933)
+.....++.++++.+.++|.+|.+. .++. .|..+++|++|+|++|++.. +| .+.++++|
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~----------------~l~~-~~~~l~~L~~L~ls~n~l~~---l~-~~~~l~~L 72 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIE----------------KMDA-TLSTLKACKHLALSTNNIEK---IS-SLSGMENL 72 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCC----------------CCHH-HHHHTTTCSEEECSEEEESC---CC-CHHHHTTC
T ss_pred HHhcccccCcchheeEeccccCcHh----------------hhhH-HHhcCCCCCEEECCCCCCcc---cc-ccccCCCC
Confidence 3445566666666666666554211 0000 24444445555555544444 33 44555555
Q ss_pred CeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCC
Q 002346 166 TTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKN 245 (933)
Q Consensus 166 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N 245 (933)
++|+|++|++.. +|..+..+++|++|+|++|++++ +| .+. .+++|+.|+|++|
T Consensus 73 ~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~------------------------~l~~L~~L~l~~N 125 (198)
T 1ds9_A 73 RILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIE------------------------KLVNLRVLYMSNN 125 (198)
T ss_dssp CEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHH------------------------HHHHSSEEEESEE
T ss_pred CEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccc------------------------cCCCCCEEECCCC
Confidence 555555555542 34455555556666666666652 33 222 2556666666666
Q ss_pred ccCCCCC--CCCCCCCCCEEEccCCcccccCcc----------cccCCCCCCEEEccCccCc
Q 002346 246 QFTGPIP--DLSKCESLFDLSLRDNQLTGVVPA----------SVISLPALLNISLQNNKLQ 295 (933)
Q Consensus 246 ~l~~~~~--~~~~~~~L~~L~L~~N~l~~~~p~----------~l~~l~~L~~L~Ls~N~l~ 295 (933)
++++..+ .+..+++|+.|++++|.+++.+|. .+..+++|+.|| +|.++
T Consensus 126 ~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 6665332 356666777777777777655554 266777777775 56655
No 393
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=4.8e-13 Score=130.76 Aligned_cols=104 Identities=28% Similarity=0.423 Sum_probs=60.3
Q ss_pred EEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCC
Q 002346 70 TISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNP 148 (933)
Q Consensus 70 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 148 (933)
.|++++++|+ .+|..+. ++|++|+|++|+|++++| .|.++++|++|+|++|+|+++++..|.
T Consensus 13 ~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~-------------- 75 (170)
T 3g39_A 13 TVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD-------------- 75 (170)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT--------------
T ss_pred EEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc--------------
Confidence 4455556665 3554442 556666666666665555 455555555555555555555554444
Q ss_pred CCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCC
Q 002346 149 NLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGS 202 (933)
Q Consensus 149 ~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 202 (933)
++++|++|+|++|+|++..+..|..+++|++|+|++|+++..
T Consensus 76 ------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 76 ------------KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp ------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ------------CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 455555555555555555555667777777777777777643
No 394
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=4.4e-13 Score=131.00 Aligned_cols=102 Identities=25% Similarity=0.381 Sum_probs=92.3
Q ss_pred CCCCCccccceEeCCC----------CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCcee
Q 002346 50 SSTGYCEWTGINCDNS----------NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDI 118 (933)
Q Consensus 50 ~~~~~C~w~gv~c~~~----------~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L 118 (933)
+..+.|.|+.+.|++. ..++.|+|++|+|++..|..|..+++|++|+|++|+|+++++ .|.++++|++|
T Consensus 4 P~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 4 PSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp C-CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 4556789999999752 478999999999999889999999999999999999999888 57899999999
Q ss_pred ccccccccCCCCCcccCCCCCCEEEccCCCCCC
Q 002346 119 YLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLA 151 (933)
Q Consensus 119 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~ 151 (933)
+|++|+|+++++..|..+++|++|+|++|.+..
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999999999999999999999999999998876
No 395
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=1.4e-12 Score=127.82 Aligned_cols=103 Identities=26% Similarity=0.455 Sum_probs=62.9
Q ss_pred EEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCC
Q 002346 69 TTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDN 147 (933)
Q Consensus 69 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 147 (933)
+.+++++++|+ .+|..+. ++|++|+|++|+|++++| .|.++++|++|+|++|+|+++++..|.++++|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~------ 85 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ------ 85 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE------
Confidence 56777777775 5555443 566666666666666655 4555666666666666666555554444555554
Q ss_pred CCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCC
Q 002346 148 PNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFT 200 (933)
Q Consensus 148 ~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 200 (933)
|+|++|+|.+..+..|..+++|++|+|++|+|.
T Consensus 86 --------------------L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 86 --------------------LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp --------------------EECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred --------------------EECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 455555555554555666777777777777776
No 396
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.39 E-value=6.3e-12 Score=140.42 Aligned_cols=262 Identities=11% Similarity=0.153 Sum_probs=192.2
Q ss_pred CEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEcc
Q 002346 67 RVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLS 145 (933)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 145 (933)
.++.+.+.+ +++.+-..+|.+. +|+.+.|..| ++.+.. +|.+ .+|+.+.|.+ .++.+...+|.++++|+.++|+
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 344555543 4554445677774 7999999877 776666 6877 4799999986 8999999999999999999999
Q ss_pred CCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcc
Q 002346 146 DNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLS 225 (933)
Q Consensus 146 ~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~ 225 (933)
.|++.. ++.......+|+.+.|.+ ++..+....|.++++|+.|+|..| ++ .++...
T Consensus 189 ~n~l~~---I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~a------------------ 244 (401)
T 4fdw_A 189 KTKITK---LPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEA------------------ 244 (401)
T ss_dssp TSCCSE---ECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CC-EECTTT------------------
T ss_pred CCcceE---echhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-cc-Cccccc------------------
Confidence 999887 444444478999999985 588888899999999999999875 44 333322
Q ss_pred cccccccCCccCcEEEecCCccCCCCC-CCCCCCCCCEEEccCCccc-----ccCcccccCCCCCCEEEccCccCccCCC
Q 002346 226 GTLDVLSGMTQLRQVWLHKNQFTGPIP-DLSKCESLFDLSLRDNQLT-----GVVPASVISLPALLNISLQNNKLQGPYP 299 (933)
Q Consensus 226 ~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~L~~L~L~~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 299 (933)
|.+ .+|+.+.| .|.++.+.. .|.+|++|+.+++.+|.+. ...+.+|.++++|+.++|.+ .++...
T Consensus 245 -----F~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~- 315 (401)
T 4fdw_A 245 -----FRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG- 315 (401)
T ss_dssp -----TTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC-
T ss_pred -----ccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh-
Confidence 233 56778888 344554433 4788888888888877765 35567788888888888773 344211
Q ss_pred CCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccc
Q 002346 300 LFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLL 379 (933)
Q Consensus 300 ~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l 379 (933)
...+..+++|+.|.|.+| +
T Consensus 316 ------------------------------------------------------------~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 316 ------------------------------------------------------------QGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp ------------------------------------------------------------TTTTTTCCSCCEEEECTT-C
T ss_pred ------------------------------------------------------------hhhhcCCCCccEEEECcc-c
Confidence 123344567777888554 5
Q ss_pred cCcCchhhcCcccCCeEecccCcccCCCCcccCCCC-CcCEEeccCCcCc
Q 002346 380 AGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLA-SLQNLDVSNNNLS 428 (933)
Q Consensus 380 ~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~-~L~~l~ls~N~l~ 428 (933)
+..-+..|.++ +|+.|++++|.+....+..|..++ .+..|++..|.+.
T Consensus 335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 55556789999 999999999999877777888885 7889999887654
No 397
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=2.1e-12 Score=126.53 Aligned_cols=102 Identities=25% Similarity=0.409 Sum_probs=91.2
Q ss_pred CCCCCccccceEeCCC----------CCEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCcee
Q 002346 50 SSTGYCEWTGINCDNS----------NRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDI 118 (933)
Q Consensus 50 ~~~~~C~w~gv~c~~~----------~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L 118 (933)
+..+.|....+.|.+. ..++.|+|++|+|++..|..|..+++|++|+|++|+|+++++ .|.++++|++|
T Consensus 7 P~~C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 7 PSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp CTTSEECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 3455677788888742 478999999999999889999999999999999999999887 57899999999
Q ss_pred ccccccccCCCCCcccCCCCCCEEEccCCCCCC
Q 002346 119 YLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLA 151 (933)
Q Consensus 119 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~ 151 (933)
+|++|+|+++++..|..+++|++|+|++|.+..
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 999999999999889999999999999998876
No 398
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=1.7e-11 Score=135.02 Aligned_cols=85 Identities=18% Similarity=0.222 Sum_probs=64.4
Q ss_pred CccccceEeCCCCCEEEEEecCC-CCccccCccccCCcccceeeccc-ccccccCC-CccCcCcCceeccccccccCCCC
Q 002346 54 YCEWTGINCDNSNRVTTISLAKS-GLSGTLSPEISSLTQLETLSFQM-NNIAGAIP-SLANATSLQDIYLDNNNFTSVPT 130 (933)
Q Consensus 54 ~C~w~gv~c~~~~~v~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~ 130 (933)
.|.|.+|.|.+ + +|+ .+|. |..+++|++|+|++ |.|+++++ .|.++++|++|+|++|+|+++++
T Consensus 7 ~C~~~~v~~~~-----------~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 7 PHGSSGLRCTR-----------DGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp CSSSSCEECCS-----------SCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred cccCCEEEcCC-----------CCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH
Confidence 58887777753 3 576 4677 88888888888885 88888876 68888888888888888888777
Q ss_pred CcccCCCCCCEEEccCCCCCC
Q 002346 131 GCFDGLTNLQVLSLSDNPNLA 151 (933)
Q Consensus 131 ~~~~~l~~L~~L~Ls~N~~~~ 151 (933)
..|.++++|+.|+|++|++..
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~ 94 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALES 94 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSC
T ss_pred HHhcCCcCCCEEeCCCCccce
Confidence 777777777777777666654
No 399
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.24 E-value=3e-11 Score=127.33 Aligned_cols=147 Identities=15% Similarity=0.114 Sum_probs=115.3
Q ss_pred HHHHhcCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC-CCcceeEEeEeeeCcee
Q 002346 576 LRQVTDNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR-HRHLVALLGYCINGSER 654 (933)
Q Consensus 576 l~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~ 654 (933)
+...-+.|++...++.|+++.||++.. +++.+++|+...... .....+.+|+++++.+. +..+.++++++...+..
T Consensus 9 l~~~l~~~~~~~~~~g~s~~~v~~~~~-~~~~~vlK~~~~~~~--~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~ 85 (263)
T 3tm0_A 9 LKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYK--GTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWS 85 (263)
T ss_dssp HHHHHTTSEEEECCSCCSSSEEEEEEC-SSCEEEEEEECGGGT--TSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEE
T ss_pred HHHHhccceeEeeccCCCCCeEEEEEC-CCCcEEEEeCCcccC--CCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCce
Confidence 344556798888999999999999976 478999999875321 11246889999999994 67788999999988899
Q ss_pred EEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhcc------------------------------
Q 002346 655 LLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLA------------------------------ 704 (933)
Q Consensus 655 ~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~------------------------------ 704 (933)
|+||||++|.+|.+.+.. ......++.+++++++.||+..
T Consensus 86 ~lv~e~i~G~~l~~~~~~----------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (263)
T 3tm0_A 86 NLLMSEADGVLCSEEYED----------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDC 155 (263)
T ss_dssp EEEEECCSSEEHHHHCCT----------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSG
T ss_pred EEEEEecCCeehhhccCC----------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccc
Confidence 999999999999876411 1223468899999999999821
Q ss_pred --------------------------CCCeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 705 --------------------------QQSFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 705 --------------------------~~~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
...++|+|++|.||+++++..+.|+||+.+.
T Consensus 156 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 156 ENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp GGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred ccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 1458999999999999876667799998654
No 400
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.21 E-value=4.3e-10 Score=126.05 Aligned_cols=289 Identities=13% Similarity=0.125 Sum_probs=170.4
Q ss_pred CccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCC-------------
Q 002346 83 SPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNP------------- 148 (933)
Q Consensus 83 ~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~------------- 148 (933)
..+|.++.+|+.+.|..+ ++.+.. +|.++.+|+.++|.++ ++.+...+|.++++|+.+.+..+-
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccc
Confidence 345555666666666532 444433 5566666666666533 555555556666555555543321
Q ss_pred --------CCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccc-cccchhhccc
Q 002346 149 --------NLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAK-SDIQNLWMND 219 (933)
Q Consensus 149 --------~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~l~~l~l~~ 219 (933)
... .-..+|.++++|+.+.+.++ +.......|.++.+|+.+++..| ++..-...|.. ..|+.+.+..
T Consensus 142 ~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 142 KEITIPEGVTV--IGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp SEEECCTTCCE--ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccCccccc--cchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 011 12356788899999999754 45566678888899999988776 44222333332 2344444433
Q ss_pred ccCCcccccccccCCccCcEEEecCCccCCCC-CCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCC
Q 002346 220 QQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPI-PDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPY 298 (933)
Q Consensus 220 n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 298 (933)
+..... +......+|+.+.+..+. +... ..+..+.+|+.+.+..+... .....|..+..++.+.+..+.+....
T Consensus 218 ~~~~i~---~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~ 292 (394)
T 4fs7_A 218 SLYYLG---DFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKT 292 (394)
T ss_dssp TCCEEC---TTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTT
T ss_pred CceEee---hhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecccc
Confidence 322111 112224567777765432 2222 23667777888877776554 55666777777777777665543322
Q ss_pred CCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCcc
Q 002346 299 PLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKL 378 (933)
Q Consensus 299 p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~ 378 (933)
-....+|+.+.+..+ +..+. ...+..+.+|+.++|.++
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~----------------------------------------~~aF~~c~~L~~i~lp~~- 330 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIG----------------------------------------EEAFESCTSLVSIDLPYL- 330 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEEC----------------------------------------TTTTTTCTTCCEECCCTT-
T ss_pred ccccccccccccccc-cceec----------------------------------------hhhhcCCCCCCEEEeCCc-
Confidence 222345666665432 21111 123456678888888754
Q ss_pred ccCcCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCC
Q 002346 379 LAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNN 425 (933)
Q Consensus 379 l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N 425 (933)
++..-...|.++++|+.++|..| ++..-..+|.++.+|+.+++..|
T Consensus 331 v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 331 VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 55445568889999999999877 76556778999999999988754
No 401
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=3.3e-11 Score=132.73 Aligned_cols=105 Identities=20% Similarity=0.248 Sum_probs=95.3
Q ss_pred ceeecccc-cccccCCCccCcCcCceecccc-ccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeec
Q 002346 93 ETLSFQMN-NIAGAIPSLANATSLQDIYLDN-NNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYM 170 (933)
Q Consensus 93 ~~L~l~~N-~l~~~~p~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L 170 (933)
..++++++ +|+++++ +..+++|++|+|++ |+|+++++..|.++++|+.|+|++|+|.+ ..|..|.++++|+.|+|
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--VAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE--ECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce--eCHHHhcCCcCCCEEeC
Confidence 35788888 8998776 99999999999996 99999999999999999999999999998 56778999999999999
Q ss_pred cCcccCCCCChhhcCCCCCCEEEccCCcCCC
Q 002346 171 DNANIFGLIPDFFDSFSNLQNLRLSYNNFTG 201 (933)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 201 (933)
++|+|++..+..|..++ |++|+|++|+|..
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99999998888887776 9999999999984
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=1.2e-13 Score=152.93 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=33.0
Q ss_pred CccCcEEEecCCccCCCCCC-----C-CCCCCCCEEEccCCccccc----CcccccCCCCCCEEEccCccCc
Q 002346 234 MTQLRQVWLHKNQFTGPIPD-----L-SKCESLFDLSLRDNQLTGV----VPASVISLPALLNISLQNNKLQ 295 (933)
Q Consensus 234 l~~L~~L~L~~N~l~~~~~~-----~-~~~~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 295 (933)
+++|+.|+|++|+|+..... + ...++|+.|+|++|.|+.. ++..+..+++|++|+|++|.++
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 34555566666555432211 1 2345566666666666532 3344455666666666666665
No 403
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=4.7e-13 Score=148.08 Aligned_cols=163 Identities=18% Similarity=0.134 Sum_probs=96.0
Q ss_pred CcCceeccccccccCCCCCcccC-----CCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhh----
Q 002346 113 TSLQDIYLDNNNFTSVPTGCFDG-----LTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFF---- 183 (933)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~---- 183 (933)
+.|++|+|++|.|+......+.. .++|++|+|++|.+.... +......+++|+.|+|++|+|+......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~-~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG-LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH-HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH-HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45666666666666433322222 256777777777654310 11112334567777777777654433333
Q ss_pred -cCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCC-----CCCCCC
Q 002346 184 -DSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPI-----PDLSKC 257 (933)
Q Consensus 184 -~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~-----~~~~~~ 257 (933)
...++|++|+|++|.|+......++ ..+..+++|++|+|++|.|++.. ..+..+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~--------------------~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~ 210 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLM--------------------EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN 210 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHH--------------------HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHH--------------------HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence 2456788888888877632222221 12334677888888888776422 125566
Q ss_pred CCCCEEEccCCccccc----CcccccCCCCCCEEEccCccCcc
Q 002346 258 ESLFDLSLRDNQLTGV----VPASVISLPALLNISLQNNKLQG 296 (933)
Q Consensus 258 ~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 296 (933)
++|+.|+|++|.|+.. ++..+...++|++|+|++|.|++
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 7788888888888753 34445566788888888888774
No 404
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.11 E-value=1.6e-10 Score=121.54 Aligned_cols=136 Identities=20% Similarity=0.153 Sum_probs=100.5
Q ss_pred CCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCc--ceeEEeEeeeCceeEEEEe
Q 002346 582 NFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRH--LVALLGYCINGSERLLVYE 659 (933)
Q Consensus 582 ~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e 659 (933)
.|.+....+.|..+.||++...+|+.+++|..... ....+.+|+.+++.+.+.+ +.+++++...++..++|||
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~-----~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e 95 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG-----ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLG 95 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC-----TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEE
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc-----cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEE
Confidence 34443333455669999998877888999987643 1245788999999996444 5568888887778899999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhcc-----------------------------------
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLA----------------------------------- 704 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~----------------------------------- 704 (933)
|++|.+|. ... .+ ...++.++++.++.||+..
T Consensus 96 ~i~G~~l~--~~~--------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (264)
T 1nd4_A 96 EVPGQDLL--SSH--------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEH 162 (264)
T ss_dssp CCSSEETT--TSC--------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGG
T ss_pred ecCCcccC--cCc--------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhc
Confidence 99998884 211 11 2357788888888888732
Q ss_pred --------------------CCCeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 705 --------------------QQSFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 705 --------------------~~~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
...++|+|++|.||++++++.+.|+|||.+.
T Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~ 213 (264)
T 1nd4_A 163 QGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG 213 (264)
T ss_dssp TTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred cCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence 1129999999999999887667899999764
No 405
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.99 E-value=1.7e-09 Score=119.61 Aligned_cols=143 Identities=13% Similarity=0.232 Sum_probs=108.0
Q ss_pred cCCccccCCCeEEEEEEeCCCcEEEEEEec--cccCCchhHHHHHHHHHHHHhcC--CCcceeEEeEeeeC---ceeEEE
Q 002346 585 EANILGRGGFGVVYGGELPDGTKIAVKRME--SNTMGNKGLSEFQAEIAVLTKVR--HRHLVALLGYCING---SERLLV 657 (933)
Q Consensus 585 ~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~--~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~---~~~~lv 657 (933)
..+.|+.|.++.||+.... +..+++|+.. .... ......+.+|+.+++.+. +..+++++.++.+. +..++|
T Consensus 42 ~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~-~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~v 119 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKL-LPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYI 119 (359)
T ss_dssp EEEECCC-CCSCEEEEECS-SCEEEEECCCC-----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEE
T ss_pred eEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCC-CCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEE
Confidence 4578999999999999875 4688899776 3321 122357889999999996 45688899988776 457999
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhcc---------------------------------
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLA--------------------------------- 704 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~--------------------------------- 704 (933)
|||++|..+.+.. ...++..++..++.+++++|+.||+..
T Consensus 120 me~v~G~~l~~~~-------~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (359)
T 3dxp_A 120 MEFVSGRVLWDQS-------LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETE 192 (359)
T ss_dssp EECCCCBCCCCTT-------CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCS
T ss_pred EEecCCeecCCCc-------cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCc
Confidence 9999998775422 134678889999999999999999731
Q ss_pred ----------------------CCCeEecCCCCCcEEecCCCc--EEEeccccccc
Q 002346 705 ----------------------QQSFIHRDLKPSNILIGDDMR--AKVADFGLVKN 736 (933)
Q Consensus 705 ----------------------~~~ivH~Dik~~Nill~~~~~--~kl~DfGla~~ 736 (933)
...++|||+++.||+++.++. +.|+||+.+..
T Consensus 193 ~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 193 SIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp CCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred CChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 257999999999999997753 68999998763
No 406
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.92 E-value=4.5e-08 Score=109.51 Aligned_cols=37 Identities=19% Similarity=0.450 Sum_probs=27.6
Q ss_pred CCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEcc
Q 002346 253 DLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQ 290 (933)
Q Consensus 253 ~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 290 (933)
.|.++.+|+.+.+.++... ....+|.+++.|+.+.+.
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~ 296 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS 296 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCC
Confidence 3777888888888766554 556678888888888875
No 407
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.91 E-value=2.4e-08 Score=111.76 Aligned_cols=293 Identities=12% Similarity=0.105 Sum_probs=151.7
Q ss_pred cccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCC
Q 002346 101 NIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLI 179 (933)
Q Consensus 101 ~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 179 (933)
.++.+.. +|.++.+|+.+.|.. .++.|...+|.++++|+.++|.+| ++. .-...|.++.+|+.+.+..+ +....
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~--I~~~aF~~c~~L~~i~~p~~-l~~i~ 132 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKM--IGRCTFSGCYALKSILLPLM-LKSIG 132 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCE--ECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceE--ccchhhcccccchhhcccCc-eeeec
Confidence 3555555 799999999999974 599999999999999999999866 443 23467888888888777643 33333
Q ss_pred ChhhcCCCCCCEEEccCCcCCCCCCccccc-cccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCC-CCCCC
Q 002346 180 PDFFDSFSNLQNLRLSYNNFTGSLPASFAK-SDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIP-DLSKC 257 (933)
Q Consensus 180 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~ 257 (933)
...|.....++......... .-...|.. ..|+.+.+.++.. ......|.++.+|+.+.+..| ++.... .|.++
T Consensus 133 ~~aF~~~~~~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~ 207 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEGVTV--IGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAEC 207 (394)
T ss_dssp TTTTTTCCCSEEECCTTCCE--ECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred ceeeecccccccccCccccc--cchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence 33333332222111111110 11111211 2233333222111 111123445666666666554 222222 35556
Q ss_pred CCCCEEEccCCcccccCcccccCCCCCCEEEccCccCc--cCCCCCCCCccEEeccCCcCCCCCCCCCCCCCchhhhhHh
Q 002346 258 ESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQ--GPYPLFPSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQ 335 (933)
Q Consensus 258 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~ 335 (933)
..|+.+.+..+... +.+.......|+.+.+..+.-. ...-.....++.+.+..+.. .+....+..+..
T Consensus 208 ~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~------- 277 (394)
T 4fs7_A 208 ILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSG------- 277 (394)
T ss_dssp TTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTT-------
T ss_pred cccceeecCCCceE--eehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcc-eeeccccccccc-------
Confidence 66666655554332 2222333345555555432111 00111122344444433321 111111100000
Q ss_pred hhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhcCcccCCeEecccCcccCCCCcccCCCC
Q 002346 336 IAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLA 415 (933)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~ 415 (933)
+.....+.... ....+..+.+|+.+.+.++ ++..-...|.++++|+.++|.++ ++..-..+|.++.
T Consensus 278 ----------l~~~~~~~~~i--~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 278 ----------LKKVIYGSVIV--PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCT 343 (394)
T ss_dssp ----------CCEEEECSSEE--CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred ----------cceeccCceee--ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCC
Confidence 00000000000 0123445678888888765 55445568999999999999754 7655578899999
Q ss_pred CcCEEeccCCcCc
Q 002346 416 SLQNLDVSNNNLS 428 (933)
Q Consensus 416 ~L~~l~ls~N~l~ 428 (933)
+|+.+++..| ++
T Consensus 344 ~L~~i~lp~~-l~ 355 (394)
T 4fs7_A 344 SLSNINFPLS-LR 355 (394)
T ss_dssp TCCEECCCTT-CC
T ss_pred CCCEEEECcc-cc
Confidence 9999998766 44
No 408
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.86 E-value=4.1e-11 Score=124.28 Aligned_cols=149 Identities=16% Similarity=0.151 Sum_probs=103.9
Q ss_pred CCccccceEeCCC-CCEEEEEecC---CCCccccC-ccccCCcccceeecccccccccCC--CccCcCcCce--eccccc
Q 002346 53 GYCEWTGINCDNS-NRVTTISLAK---SGLSGTLS-PEISSLTQLETLSFQMNNIAGAIP--SLANATSLQD--IYLDNN 123 (933)
Q Consensus 53 ~~C~w~gv~c~~~-~~v~~L~l~~---~~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~L~~--L~Ls~N 123 (933)
..|.|.|+.|+.. .+|+.+...+ ..+.+.+. ..+..++. .|...+|.-++..+ .|...+.|+. ++++.|
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N 153 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN 153 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTT
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCC
Confidence 4688999999864 3666665544 23334443 23333333 45566676666555 4777777777 778888
Q ss_pred cccCCC---CCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCC--CCCEEEccCCc
Q 002346 124 NFTSVP---TGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFS--NLQNLRLSYNN 198 (933)
Q Consensus 124 ~l~~~~---~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~N~ 198 (933)
....++ .....++++|+.|+|++|++.+...+|..+..+++|+.|+|++|+|.+. ..+..+. +|++|+|++|.
T Consensus 154 ~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 154 RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTST
T ss_pred HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCc
Confidence 555332 2223568899999999999988545667778999999999999999886 3444444 99999999999
Q ss_pred CCCCCCc
Q 002346 199 FTGSLPA 205 (933)
Q Consensus 199 l~~~~p~ 205 (933)
+.+.+|.
T Consensus 232 l~~~~~~ 238 (267)
T 3rw6_A 232 LCDTFRD 238 (267)
T ss_dssp TGGGCSS
T ss_pred CccccCc
Confidence 9987773
No 409
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.85 E-value=1.3e-09 Score=117.36 Aligned_cols=186 Identities=16% Similarity=0.225 Sum_probs=123.0
Q ss_pred CCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC-CCc--ceeEEeEeeeCc---eeEEEEe
Q 002346 586 ANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR-HRH--LVALLGYCINGS---ERLLVYE 659 (933)
Q Consensus 586 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lv~e 659 (933)
++.++.|....||+.. ..+++|+.... .....+.+|+++++.+. +.. +.+++.....+. ..|+|||
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~----~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~ 96 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS----RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFT 96 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH----HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEE
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc----chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEc
Confidence 4668999999999863 46889975432 34567899999999883 333 445555544333 3478999
Q ss_pred ecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhcc-----------------------------------
Q 002346 660 YMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLA----------------------------------- 704 (933)
Q Consensus 660 ~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~----------------------------------- 704 (933)
+++|.++.+... ..++..++..++.++++.++.||+..
T Consensus 97 ~i~G~~l~~~~~-------~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (304)
T 3sg8_A 97 KIKGVPLTPLLL-------NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQ 169 (304)
T ss_dssp CCCCEECCHHHH-------HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHH
T ss_pred ccCCeECCcccc-------ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCccc
Confidence 999988875432 23677888889999999999998611
Q ss_pred --------------------CCCeEecCCCCCcEEecC--CCcEEEecccccccCCCCCceeec-------------ccc
Q 002346 705 --------------------QQSFIHRDLKPSNILIGD--DMRAKVADFGLVKNAPDGKYSVET-------------RLA 749 (933)
Q Consensus 705 --------------------~~~ivH~Dik~~Nill~~--~~~~kl~DfGla~~~~~~~~~~~~-------------~~~ 749 (933)
...++|+|++|.||++++ ...+.|+||+.+........-... ...
T Consensus 170 ~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l 249 (304)
T 3sg8_A 170 MKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKIL 249 (304)
T ss_dssp HHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHH
Confidence 135899999999999998 456889999987643221100000 000
Q ss_pred cccCccc-ccccCCCCCCCccchHhHHHHHHHHHcCCCCC
Q 002346 750 GTFGYLA-PEYAATGRVTTKIDVYAFGVVLMETITGRKAL 788 (933)
Q Consensus 750 gt~~y~a-PE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~ 788 (933)
...++.. |+.... .....+.|++|.++|++.+|+.+|
T Consensus 250 ~~Y~~~~~~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 250 NHYKHKDIPTVLEK--YRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp HHHTCSCHHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCCCcHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHH
Confidence 0011111 222111 112368999999999999998655
No 410
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.84 E-value=4.4e-10 Score=123.03 Aligned_cols=139 Identities=15% Similarity=0.160 Sum_probs=70.2
Q ss_pred ccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhc--CCCCCCEEEccC--CcCCCCC-Cccc
Q 002346 133 FDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFD--SFSNLQNLRLSY--NNFTGSL-PASF 207 (933)
Q Consensus 133 ~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~--N~l~~~~-p~~~ 207 (933)
+..+++|+.|+|++|.-.. ++. + .+++|+.|+|..|.+.......+. .+++|++|+|+. |...+.. ...+
T Consensus 168 l~~~P~L~~L~L~g~~~l~---l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLS---IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHTCTTCCEEEEECCBTCB---CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HhcCCCCcEEEEeCCCCce---ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 3445566666665552111 222 2 256666666666655433333333 567777777643 2211110 0011
Q ss_pred cccccchhhcccccCCcccccccc--cCCccCcEEEecCCccCCCCC----CCCCCCCCCEEEccCCccccc----Cccc
Q 002346 208 AKSDIQNLWMNDQQLGLSGTLDVL--SGMTQLRQVWLHKNQFTGPIP----DLSKCESLFDLSLRDNQLTGV----VPAS 277 (933)
Q Consensus 208 ~~~~l~~l~l~~n~~~~~~~~~~l--~~l~~L~~L~L~~N~l~~~~~----~~~~~~~L~~L~L~~N~l~~~----~p~~ 277 (933)
.. .+ ..+++|+.|+|.+|.+.+..+ ....+++|++|+|+.|.|++. ++..
T Consensus 243 ~~--------------------~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~ 302 (362)
T 2ra8_A 243 RP--------------------LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302 (362)
T ss_dssp GG--------------------GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT
T ss_pred HH--------------------HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh
Confidence 00 01 125667777777766653221 123456777777777777653 2333
Q ss_pred ccCCCCCCEEEccCccCcc
Q 002346 278 VISLPALLNISLQNNKLQG 296 (933)
Q Consensus 278 l~~l~~L~~L~Ls~N~l~~ 296 (933)
+..+++|+.|+|++|.++.
T Consensus 303 L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 303 VDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHHTTCSEEECCSBBCCH
T ss_pred cccCCcceEEECCCCcCCH
Confidence 3445677777777776663
No 411
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=3e-09 Score=116.48 Aligned_cols=141 Identities=16% Similarity=0.158 Sum_probs=89.6
Q ss_pred ccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCccccc--CCCCCCEEEccCc--cCccCCCCCCCCcc
Q 002346 231 LSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVI--SLPALLNISLQNN--KLQGPYPLFPSKVQ 306 (933)
Q Consensus 231 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~Ls~N--~l~~~~p~~~~~l~ 306 (933)
+..+++|+.|+|++|.-. .++.+. +++|+.|+|..|.++......+. .+++|+.|+|+.+ ...+... ++
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~-----~~ 240 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD-----MN 240 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC-----GG
T ss_pred HhcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh-----HH
Confidence 455788888888877311 223343 78899999988887755444554 6888888888642 2111100 00
Q ss_pred EEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccc--cCCCceeEEEccCccccCcCc
Q 002346 307 KVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVT--CSQGRIITINLANKLLAGNIS 384 (933)
Q Consensus 307 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~L~~L~Ls~N~l~g~~p 384 (933)
.+...+ ..+++|+.|+|++|.+.+..+
T Consensus 241 ---------------------------------------------------~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~ 269 (362)
T 2ra8_A 241 ---------------------------------------------------VFRPLFSKDRFPNLKWLGIVDAEEQNVVV 269 (362)
T ss_dssp ---------------------------------------------------GTGGGSCTTTCTTCCEEEEESCTTHHHHH
T ss_pred ---------------------------------------------------HHHHHHhcCCCCCcCEEeCCCCCCchHHH
Confidence 000000 234688888888888876544
Q ss_pred hhhc---CcccCCeEecccCcccCC----CCcccCCCCCcCEEeccCCcCcc
Q 002346 385 PAYA---NLTSLKNLYLQQNNLTGP----IPDGLTKLASLQNLDVSNNNLSG 429 (933)
Q Consensus 385 ~~~~---~l~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~l~ls~N~l~g 429 (933)
..+. .+++|+.|+|+.|+|.+. ++..+..+++|+.|+|++|.++.
T Consensus 270 ~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 4443 578888888888888763 44445567888888888887763
No 412
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.79 E-value=1.9e-07 Score=104.46 Aligned_cols=292 Identities=11% Similarity=0.125 Sum_probs=178.7
Q ss_pred ccccCC-cccceeecccccccccCC-CccCcCcCceecccccc---ccCCCCCcccCCCCCCEEEccCCCCCCCCCCCcc
Q 002346 84 PEISSL-TQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNN---FTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNE 158 (933)
Q Consensus 84 ~~~~~l-~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~ 158 (933)
.+|.+. ..|+.+.+..+ ++.+.. +|.++.+|+.+.+..|. ++.|...+|.++.+|+.+.+..+ +.. .-...
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~--I~~~a 132 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE--IDSEA 132 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE--ECTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce--ehhhh
Confidence 456565 35777777654 555555 68888888888887764 66777778888888887777655 333 23456
Q ss_pred ccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCc
Q 002346 159 LTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLR 238 (933)
Q Consensus 159 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~ 238 (933)
|..+.+|+.+.+.. .+.......|..+.+|+.+.+..+ ++..-...|....|+.+.+..+... .....+.++.+|.
T Consensus 133 F~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~--i~~~af~~c~~l~ 208 (394)
T 4gt6_A 133 FHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTR--IGTNAFSECFALS 208 (394)
T ss_dssp TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCE--ECTTTTTTCTTCC
T ss_pred hhhhcccccccccc-eeeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccc--cccchhhhccccc
Confidence 77788888888864 345555667777888888887654 3323334444444444444332211 1123455666777
Q ss_pred EEEecCCccCCCCCC--------------CCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCC-C--C
Q 002346 239 QVWLHKNQFTGPIPD--------------LSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYP-L--F 301 (933)
Q Consensus 239 ~L~L~~N~l~~~~~~--------------~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~--~ 301 (933)
......+........ +.....+..+.+. +.++..-..+|.++..|+.+.+.++..+ ... . .
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~ 286 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMN 286 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTT
T ss_pred eecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccce-ecCccccc
Confidence 776665544322111 1122334444443 3344345567888899999998765443 111 1 1
Q ss_pred CCCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccC
Q 002346 302 PSKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAG 381 (933)
Q Consensus 302 ~~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 381 (933)
...|+.+.+.. .+..+. ...+..+.+|+.++|..+ ++.
T Consensus 287 c~~L~~i~l~~-~i~~I~----------------------------------------~~aF~~c~~L~~i~lp~~-v~~ 324 (394)
T 4gt6_A 287 CPALQDIEFSS-RITELP----------------------------------------ESVFAGCISLKSIDIPEG-ITQ 324 (394)
T ss_dssp CTTCCEEECCT-TCCEEC----------------------------------------TTTTTTCTTCCEEECCTT-CCE
T ss_pred ccccccccCCC-cccccC----------------------------------------ceeecCCCCcCEEEeCCc-ccE
Confidence 23566666532 221111 123455678899999765 554
Q ss_pred cCchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCCcCc
Q 002346 382 NISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNNNLS 428 (933)
Q Consensus 382 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N~l~ 428 (933)
.-...|.++++|+.+.|..+ ++..-..+|.++.+|+.+++.+|...
T Consensus 325 I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 325 ILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred ehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence 45568999999999999654 76455678999999999999887643
No 413
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.59 E-value=3.1e-07 Score=99.39 Aligned_cols=136 Identities=18% Similarity=0.259 Sum_probs=102.7
Q ss_pred CCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCC----CcceeEEeEeeeCceeEEE
Q 002346 582 NFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRH----RHLVALLGYCINGSERLLV 657 (933)
Q Consensus 582 ~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h----~niv~l~~~~~~~~~~~lv 657 (933)
.....+.++.|....||+. |+.+++|+.... .....+.+|.+++..+.+ ..+.+++++ +..++|
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~----~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lv 105 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD----SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNI 105 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH----HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH----HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEE
Confidence 5666788999999999998 667889976432 223568999999999865 234455554 456899
Q ss_pred EeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccC--------------------------------
Q 002346 658 YEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQ-------------------------------- 705 (933)
Q Consensus 658 ~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~-------------------------------- 705 (933)
|||++|.++..... ..++..++..++.++++.++.||+...
T Consensus 106 me~i~G~~l~~~~~-------~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (320)
T 3r70_A 106 MKYIKGERITYEQY-------HKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKE 178 (320)
T ss_dssp EECCCCBCCCHHHH-------TTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHT
T ss_pred EeecCCcccccccc-------ccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhc
Confidence 99999988874331 235677778888888888888885321
Q ss_pred ----------------------------CCeEecCCCCCcEEecCCCcEEEeccccccc
Q 002346 706 ----------------------------QSFIHRDLKPSNILIGDDMRAKVADFGLVKN 736 (933)
Q Consensus 706 ----------------------------~~ivH~Dik~~Nill~~~~~~kl~DfGla~~ 736 (933)
..++|+|++|.||+++.+..+.|+||+.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~ 237 (320)
T 3r70_A 179 QLLTDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNV 237 (320)
T ss_dssp TCCCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEE
T ss_pred ccccccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCccccc
Confidence 2359999999999999976679999998753
No 414
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.51 E-value=2.7e-06 Score=94.44 Aligned_cols=293 Identities=10% Similarity=0.103 Sum_probs=147.7
Q ss_pred CEEEEEecCCCCccccCccccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEcc
Q 002346 67 RVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLS 145 (933)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 145 (933)
+++.+.+.. +++.+-..+|.++.+|+.++|..+ ++.+.. +|.++ +|+.+.+.. +++.+...+|... +|+.+.+.
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DLDDFEFP 121 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CCSEEECC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccC-CcccccCC
Confidence 455555542 454333456666666666666543 444433 45554 455555543 3556666666554 56666665
Q ss_pred CCCCCCCCCCCccccCCccCCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcc
Q 002346 146 DNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLS 225 (933)
Q Consensus 146 ~N~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~ 225 (933)
.+- .. .-...|.+. +|+.+.+.. .+.......|....+|+.+.+..+.........+..... .
T Consensus 122 ~~~-~~--i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------~ 184 (379)
T 4h09_A 122 GAT-TE--IGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKN------------K 184 (379)
T ss_dssp TTC-CE--ECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETT------------S
T ss_pred Ccc-cc--ccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccc------------c
Confidence 442 21 112233332 455544433 344444555666667776666655433111110000000 0
Q ss_pred cccccccCCccCcEEEecCCccCCCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCCC---C
Q 002346 226 GTLDVLSGMTQLRQVWLHKNQFTGPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPLF---P 302 (933)
Q Consensus 226 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---~ 302 (933)
.....+.....+..+.+..+.-.-....+..+.+|+.+.+..+ +.......+.++..|+.+.+..+ ++...... .
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~ 262 (379)
T 4h09_A 185 TILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC 262 (379)
T ss_dssp SEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC
T ss_pred ceeccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccccee
Confidence 0001122234444444433322222223555666666666544 33244455666666666666544 33221111 1
Q ss_pred CCccEEeccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCc
Q 002346 303 SKVQKVSLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGN 382 (933)
Q Consensus 303 ~~l~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~ 382 (933)
..++.+.+..+ +..+. ...+..+.+|+.+.+.++.++..
T Consensus 263 ~~l~~i~l~~~-i~~i~----------------------------------------~~aF~~c~~L~~i~l~~~~i~~I 301 (379)
T 4h09_A 263 TALKTLNFYAK-VKTVP----------------------------------------YLLCSGCSNLTKVVMDNSAIETL 301 (379)
T ss_dssp TTCCEEEECCC-CSEEC----------------------------------------TTTTTTCTTCCEEEECCTTCCEE
T ss_pred ehhcccccccc-ceecc----------------------------------------cccccccccccccccccccccee
Confidence 23344433221 11100 12344567788888888877765
Q ss_pred CchhhcCcccCCeEecccCcccCCCCcccCCCCCcCEEeccCC
Q 002346 383 ISPAYANLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNN 425 (933)
Q Consensus 383 ~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N 425 (933)
-...|.++++|+.+.|..+ ++..-..+|.++.+|+.+.+..|
T Consensus 302 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 302 EPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred hhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 6678888888888888654 66455667888888888877543
No 415
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.47 E-value=4.3e-07 Score=96.20 Aligned_cols=146 Identities=22% Similarity=0.213 Sum_probs=95.1
Q ss_pred CCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCC---cceeEEeEeeeCceeEEEE
Q 002346 582 NFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHR---HLVALLGYCINGSERLLVY 658 (933)
Q Consensus 582 ~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~~lv~ 658 (933)
.....+.|+.|.++.||++...+|+.++||+..... ......|.+|++.++.+++. .+++++++. ..++||
T Consensus 16 ~~~~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~--~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvm 89 (288)
T 3d1u_A 16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDA--PALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAM 89 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTC--CCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEE
T ss_pred CccceeeeCCcchhheEEEEeCCCCeEEEEecCCCC--cchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEE
Confidence 344567899999999999988889999999865432 22235789999999999765 577888764 368999
Q ss_pred eecCCCChh--------hH---hhhcccCCC--C--------------CCCHHHHHH--------------------HHH
Q 002346 659 EYMPRGTLA--------QH---LFEWHDHGY--T--------------PLTWKQRVT--------------------IAL 691 (933)
Q Consensus 659 e~~~~gsL~--------~~---l~~~~~~~~--~--------------~l~~~~~~~--------------------i~~ 691 (933)
||++++++. +. +|....... . .-+|.+... ...
T Consensus 90 e~l~g~~~~~~~~~~lg~~LA~LH~~~~~~fG~~~~~~~G~~~q~~~w~~~W~~f~~~~rl~~~l~~a~~~~~~~~~~~~ 169 (288)
T 3d1u_A 90 EWVDERPPTPEAAERFGHQLAAMHLAGAESFGATWDGYIGPLPMDNTPRSTWPEFYAEQRILPYLRRAADRGALTPGDVR 169 (288)
T ss_dssp ECCCCCCCCHHHHHHHHHHHHHHHHTCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHHTHHHHHHHHHTTSSCHHHHH
T ss_pred EecccCCCChHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 999998753 22 232111100 0 123433210 011
Q ss_pred HHHHHHHHhh----hccCCCeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 692 DVARGVEYLH----SLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 692 ~i~~~l~~LH----~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
.+-+.++.+. ......++|+|+.+.||+++. +.+.|+|| .+.
T Consensus 170 ~~~~l~~~l~~~l~~~~~~~l~HgD~~~~N~l~~~-~~~~~iD~-~~~ 215 (288)
T 3d1u_A 170 LVEKVLDALDHLAGDPEPPARIHGDLWNGNVLWQD-DGAVVIDP-AAH 215 (288)
T ss_dssp HHHHHHHTHHHHTCSCCCCEEECSCCSGGGEEEET-TEEEECSC-CCE
T ss_pred HHHHHHHHHHHHhcCCCCCcceECCCCcCcEEEeC-CCeEEEcC-CcC
Confidence 1112222232 122468999999999999988 45889999 544
No 416
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=7.9e-08 Score=99.56 Aligned_cols=117 Identities=21% Similarity=0.276 Sum_probs=87.2
Q ss_pred cCCCCccccCc-cccCCcccce--eeccccccc---ccCC-CccCcCcCceeccccccccCCCC--CcccCCCCCCEEEc
Q 002346 74 AKSGLSGTLSP-EISSLTQLET--LSFQMNNIA---GAIP-SLANATSLQDIYLDNNNFTSVPT--GCFDGLTNLQVLSL 144 (933)
Q Consensus 74 ~~~~l~~~~~~-~~~~l~~L~~--L~l~~N~l~---~~~p-~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L 144 (933)
+++..++.++- .+...+.|.. ++++.|... +.++ ...++++|+.|+|++|+|++++. ..+..+++|+.|+|
T Consensus 124 ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~L 203 (267)
T 3rw6_A 124 RYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL 203 (267)
T ss_dssp TEETTTTEEECTTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEEC
T ss_pred ccchhccccCHHHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEEC
Confidence 34444444442 3667777777 778888543 3333 23568999999999999998763 55678999999999
Q ss_pred cCCCCCCCCCCCccccCCc--cCCeeeccCcccCCCCC-------hhhcCCCCCCEEEc
Q 002346 145 SDNPNLAPWPFPNELTKST--SLTTLYMDNANIFGLIP-------DFFDSFSNLQNLRL 194 (933)
Q Consensus 145 s~N~~~~~~~~p~~~~~l~--~L~~L~L~~n~l~~~~p-------~~~~~l~~L~~L~L 194 (933)
++|++.+. ..+..++ +|++|+|++|.+.+.+| ..+..+++|+.||=
T Consensus 204 s~N~i~~~----~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 204 SGNELKSE----RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp TTSCCCSG----GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CCCccCCc----hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 99999882 3455555 99999999999998766 34778999999873
No 417
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.32 E-value=3e-06 Score=90.80 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=95.6
Q ss_pred CCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCC---cceeEEeEee-eCceeEEEEeec
Q 002346 586 ANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHR---HLVALLGYCI-NGSERLLVYEYM 661 (933)
Q Consensus 586 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~-~~~~~~lv~e~~ 661 (933)
++.++.|....||+. |..+++|+-.. ......+.+|+++++.+.+. .+.+++.++. ..+..++||||+
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~----~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i 95 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKS----QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKV 95 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESS----HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECC
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCC----chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEecc
Confidence 456888888899988 56788887432 23456889999999999642 3566777764 345678999999
Q ss_pred CCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhc--------------------------------------
Q 002346 662 PRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSL-------------------------------------- 703 (933)
Q Consensus 662 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~-------------------------------------- 703 (933)
+|.++.+... ..++..++..++.++++.|+.||+.
T Consensus 96 ~G~~l~~~~~-------~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~ 168 (306)
T 3tdw_A 96 QGQILGEDGM-------AVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESL 168 (306)
T ss_dssp CSEECHHHHH-------TTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred CCeECchhhh-------hhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhh
Confidence 9988876321 1234555556666666666666642
Q ss_pred -------------------cCCCeEecCCCCCcEEecC---CCc-EEEecccccc
Q 002346 704 -------------------AQQSFIHRDLKPSNILIGD---DMR-AKVADFGLVK 735 (933)
Q Consensus 704 -------------------~~~~ivH~Dik~~Nill~~---~~~-~kl~DfGla~ 735 (933)
....++|+|+++.||+++. ++. +.|+||+.+.
T Consensus 169 ~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~ 223 (306)
T 3tdw_A 169 RDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAA 223 (306)
T ss_dssp HHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCE
T ss_pred HHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcC
Confidence 1235699999999999987 455 5899999765
No 418
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.30 E-value=3.6e-06 Score=88.60 Aligned_cols=134 Identities=18% Similarity=0.168 Sum_probs=99.3
Q ss_pred ccccCCCe-EEEEEEeC-CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC-CCcceeEEeEeeeCceeEEEEeecCCC
Q 002346 588 ILGRGGFG-VVYGGELP-DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR-HRHLVALLGYCINGSERLLVYEYMPRG 664 (933)
Q Consensus 588 ~lg~G~~g-~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~g 664 (933)
.+..|..+ .||+.... ++..+++|+-... ...++.+|...++.+. +--+.++++++.+++..++|||+++|.
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~-----~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~ 105 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS-----VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGK 105 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEETH-----HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSE
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCCC-----CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCc
Confidence 45556665 68988654 4678999976533 3457889999999884 444778899999999999999999998
Q ss_pred ChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhcc----------------------------------------
Q 002346 665 TLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLA---------------------------------------- 704 (933)
Q Consensus 665 sL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~---------------------------------------- 704 (933)
++.+..... ......++.++++.++.||+..
T Consensus 106 ~~~~~~~~~---------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (272)
T 4gkh_A 106 TAFQVLEEY---------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPV 176 (272)
T ss_dssp EHHHHHHHC---------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCH
T ss_pred cccccccCC---------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHH
Confidence 887765321 1223456777777777787521
Q ss_pred ---------------CCCeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 705 ---------------QQSFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 705 ---------------~~~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
...++|+|+.+.||++++++.+-|+||+.+.
T Consensus 177 ~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~ 222 (272)
T 4gkh_A 177 EQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG 222 (272)
T ss_dssp HHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred HHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence 1237899999999999988777899999764
No 419
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.29 E-value=3.6e-06 Score=92.39 Aligned_cols=147 Identities=14% Similarity=0.154 Sum_probs=92.9
Q ss_pred CCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCc--ceeEEeEeeeC-ceeEEEE
Q 002346 582 NFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRH--LVALLGYCING-SERLLVY 658 (933)
Q Consensus 582 ~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~-~~~~lv~ 658 (933)
.....+.++.|....+|+... +++.+++|..... ..+.+|+.++..+.... +.++++++... +..++||
T Consensus 42 ~~~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-------~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~ 113 (362)
T 3ovc_A 42 SVSDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-------DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCIS 113 (362)
T ss_dssp CCEEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-------HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEE
T ss_pred CCceEEECCCCCcceEEEEEE-CCcEEEEEeCCch-------hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEE
Confidence 344567889999999999976 6889999977532 25889999999986433 56777776654 5689999
Q ss_pred eecCCCChhhH------------------hhhcccC---CCC---------CCCHHHH---------------------H
Q 002346 659 EYMPRGTLAQH------------------LFEWHDH---GYT---------PLTWKQR---------------------V 687 (933)
Q Consensus 659 e~~~~gsL~~~------------------l~~~~~~---~~~---------~l~~~~~---------------------~ 687 (933)
||++|.++.+. ||..... +.. .-.|.+. .
T Consensus 114 e~l~G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~ 193 (362)
T 3ovc_A 114 RRAQGVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSA 193 (362)
T ss_dssp ECCCSEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHH
T ss_pred EecCCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99998665321 1111000 000 0011111 0
Q ss_pred HHHHHHHHHHHHhhhc-cCCCeEecCCCCCcEEecCCCcEEEeccccccc
Q 002346 688 TIALDVARGVEYLHSL-AQQSFIHRDLKPSNILIGDDMRAKVADFGLVKN 736 (933)
Q Consensus 688 ~i~~~i~~~l~~LH~~-~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~ 736 (933)
.....+.+.++++... ....++|+|+.+.||++++++.+.|+||+.+..
T Consensus 194 ~~~~~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~ 243 (362)
T 3ovc_A 194 SVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMF 243 (362)
T ss_dssp HHHHHHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEE
T ss_pred cchHHHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCccccc
Confidence 1111222222333221 125689999999999998877788999997653
No 420
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.27 E-value=7.4e-08 Score=95.01 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=36.0
Q ss_pred CccCcEEEecCCccCCC-----CCCCCCCCCCCEEEc--cCCccccc----CcccccCCCCCCEEEccCccCc
Q 002346 234 MTQLRQVWLHKNQFTGP-----IPDLSKCESLFDLSL--RDNQLTGV----VPASVISLPALLNISLQNNKLQ 295 (933)
Q Consensus 234 l~~L~~L~L~~N~l~~~-----~~~~~~~~~L~~L~L--~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 295 (933)
.++|++|+|++|.|+.. ...+...++|++|+| ++|.|+.. +...+...++|++|+|++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 44566666666665542 112455566777777 66766643 3344445567777777777665
No 421
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=4.7e-08 Score=96.47 Aligned_cols=121 Identities=15% Similarity=0.135 Sum_probs=86.3
Q ss_pred cccCccccCCcccceeecccc-ccccc-----CCCccCcCcCceeccccccccCCC----CCcccCCCCCCEEEccCCCC
Q 002346 80 GTLSPEISSLTQLETLSFQMN-NIAGA-----IPSLANATSLQDIYLDNNNFTSVP----TGCFDGLTNLQVLSLSDNPN 149 (933)
Q Consensus 80 ~~~~~~~~~l~~L~~L~l~~N-~l~~~-----~p~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~~ 149 (933)
..+...+...+.|++|+|++| .|... ...+...++|++|+|++|.|+... ...+...++|++|+|++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 345556777888888888888 77542 124666788888888888887422 23345567888999998887
Q ss_pred CCCC--CCCccccCCccCCeeec--cCcccCCC----CChhhcCCCCCCEEEccCCcCC
Q 002346 150 LAPW--PFPNELTKSTSLTTLYM--DNANIFGL----IPDFFDSFSNLQNLRLSYNNFT 200 (933)
Q Consensus 150 ~~~~--~~p~~~~~l~~L~~L~L--~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 200 (933)
...+ .+...+...++|++|+| ++|.|... +...+...++|++|+|++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 6521 13456677788999999 77888654 3445556688999999999886
No 422
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.09 E-value=0.00012 Score=81.06 Aligned_cols=262 Identities=10% Similarity=0.077 Sum_probs=150.8
Q ss_pred ccCCcccceeecccccccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCcc
Q 002346 86 ISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTS 164 (933)
Q Consensus 86 ~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~ 164 (933)
+....+|+.+.+.. .++.+.. +|.++.+|+.++|.. .++.|...+|.++ +|+.+.+..+ +.. .-..+|.. .+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~--I~~~aF~~-~~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKK--FGDYVFQG-TD 114 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCE--ECTTTTTT-CC
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeE--eccceecc-CC
Confidence 44556677776654 3554444 677777777777754 3677777777766 5666666543 222 11223333 35
Q ss_pred CCeeeccCcccCCCCChhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecC
Q 002346 165 LTTLYMDNANIFGLIPDFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHK 244 (933)
Q Consensus 165 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~ 244 (933)
|+.+.+..+ +.......|.+ .+|+.+.+..+ ++..-. ..+.+..+++.+.+..
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~------------------------~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKD------------------------GIGYKAENLEKIEVSS 167 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECS------------------------CTTTTCTTCCEEEECT
T ss_pred cccccCCCc-ccccccccccc-ceeeeeeccce-eecccc------------------------chhccccccccccccc
Confidence 666666543 33333334433 24444444322 221111 1234466666666655
Q ss_pred CccCCCC-------------CCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCccCCCC---CCCCccEE
Q 002346 245 NQFTGPI-------------PDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQGPYPL---FPSKVQKV 308 (933)
Q Consensus 245 N~l~~~~-------------~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L 308 (933)
+...... ..+..+.++..+.+..+.-. .....+....+|+.+.+..+- +..... ....|+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i 245 (379)
T 4h09_A 168 NNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEI 245 (379)
T ss_dssp TCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEE
T ss_pred ccceeecccceecccccceeccccccccccccccccceeE-Eeecccccccccceeeeccce-eEEccccccCCccceEE
Confidence 4432111 12455566777766554433 556677788899999886552 222111 12356666
Q ss_pred eccCCcCCCCCCCCCCCCCchhhhhHhhhcccCCCccccCCCCCCCCCCCCCccccCCCceeEEEccCccccCcCchhhc
Q 002346 309 SLDHNNFCKNSSDAGKPCDPQVTTLLQIAGDMGYPAILSDSWEGNNACDGWPFVTCSQGRIITINLANKLLAGNISPAYA 388 (933)
Q Consensus 309 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~ 388 (933)
.+..+ +..+. ...+..+..|+.+.+..+ +...-...|.
T Consensus 246 ~lp~~-v~~I~----------------------------------------~~aF~~~~~l~~i~l~~~-i~~i~~~aF~ 283 (379)
T 4h09_A 246 AIPKN-VTSIG----------------------------------------SFLLQNCTALKTLNFYAK-VKTVPYLLCS 283 (379)
T ss_dssp EECTT-CCEEC----------------------------------------TTTTTTCTTCCEEEECCC-CSEECTTTTT
T ss_pred EcCCC-ccEeC----------------------------------------ccccceeehhcccccccc-ceeccccccc
Confidence 65443 21111 123445567888888654 4444456889
Q ss_pred CcccCCeEecccCcccCCCCcccCCCCCcCEEeccCC
Q 002346 389 NLTSLKNLYLQQNNLTGPIPDGLTKLASLQNLDVSNN 425 (933)
Q Consensus 389 ~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~l~ls~N 425 (933)
++++|+.+.+.+|.++..-..+|.++.+|+.++|..+
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 9999999999999998666789999999999999754
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.08 E-value=7.2e-06 Score=90.14 Aligned_cols=83 Identities=7% Similarity=-0.047 Sum_probs=56.8
Q ss_pred CCcc-ccCCCeEEEEEEeC-------CCcEEEEEEeccccC-CchhHHHHHHHHHHHHhcC-C--CcceeEEeEeeeC--
Q 002346 586 ANIL-GRGGFGVVYGGELP-------DGTKIAVKRMESNTM-GNKGLSEFQAEIAVLTKVR-H--RHLVALLGYCING-- 651 (933)
Q Consensus 586 ~~~l-g~G~~g~Vy~~~~~-------~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~~-- 651 (933)
.+.| +.|....+|+.... +++.+++|+...... .......+.+|+.+++.+. + -.+.+++.++.++
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3567 88888999998664 267899997654320 0001135788888888884 3 3577888887655
Q ss_pred -ceeEEEEeecCCCChhh
Q 002346 652 -SERLLVYEYMPRGTLAQ 668 (933)
Q Consensus 652 -~~~~lv~e~~~~gsL~~ 668 (933)
+..++||||++|..+.+
T Consensus 105 ~g~~~~v~e~l~G~~l~~ 122 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPPD 122 (357)
T ss_dssp TSSCEEEEECCCCBCCCB
T ss_pred cCCceEEEEecCCCChhh
Confidence 35689999999876653
No 424
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.90 E-value=9.2e-05 Score=80.62 Aligned_cols=142 Identities=16% Similarity=0.228 Sum_probs=81.4
Q ss_pred CccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC--CCcceeEEe------EeeeCceeEEEE
Q 002346 587 NILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR--HRHLVALLG------YCINGSERLLVY 658 (933)
Q Consensus 587 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~------~~~~~~~~~lv~ 658 (933)
+.|+.|..+.||+....+| .+++|+.... . .++..|+.+++.+. .-.+.+++. +...++..++||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~---~---~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~ 110 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP---E---KKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVY 110 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSC---H---HHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEE
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCC---H---HHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEE
Confidence 4566677889999987554 5999988752 1 33445556665553 112344443 123456788999
Q ss_pred eecCCCChh--------------hHhhhcccCC---------CCCCCHHHH-----------------------------
Q 002346 659 EYMPRGTLA--------------QHLFEWHDHG---------YTPLTWKQR----------------------------- 686 (933)
Q Consensus 659 e~~~~gsL~--------------~~l~~~~~~~---------~~~l~~~~~----------------------------- 686 (933)
||++|..+. ..+|...... ...-.|...
T Consensus 111 ~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 190 (346)
T 2q83_A 111 DWIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQ 190 (346)
T ss_dssp ECCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred EeecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 999986542 1122211100 001123221
Q ss_pred --HHHHHHHHHHHHHhhh----------ccCCCeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 687 --VTIALDVARGVEYLHS----------LAQQSFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 687 --~~i~~~i~~~l~~LH~----------~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
..+...+.+++++|++ .....++|+|+++.||+++.++.+.|+||+.+.
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 191 EIDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 1111224445666653 124789999999999999888899999999754
No 425
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.78 E-value=0.00015 Score=77.26 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=94.3
Q ss_pred cCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC---CCcceeEEeEeeeCceeEEEEeec
Q 002346 585 EANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR---HRHLVALLGYCINGSERLLVYEYM 661 (933)
Q Consensus 585 ~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~ 661 (933)
..+.|+.|....+|+... ++..+++|+.... ....+.+|.+.|+.+. ...++++++++...+..++||||+
T Consensus 40 ~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~-----~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l 113 (312)
T 3jr1_A 40 HKEKLYSGEMNEIWLIND-EVQTVFVKINERS-----YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEAL 113 (312)
T ss_dssp EEEEECCSSSSEEEEEES-SSCEEEEEEEEGG-----GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECC
T ss_pred eeEEeCCccceeeeEEEE-CCCeEEEEeCCcc-----cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEec
Confidence 346789999999999987 5778999987543 2467899999999883 367888999888888899999999
Q ss_pred CCCChh--------h---Hhhhccc-CCC----------------CCCCHHHHH---HHHH----------------HHH
Q 002346 662 PRGTLA--------Q---HLFEWHD-HGY----------------TPLTWKQRV---TIAL----------------DVA 694 (933)
Q Consensus 662 ~~gsL~--------~---~l~~~~~-~~~----------------~~l~~~~~~---~i~~----------------~i~ 694 (933)
++..+. + .||.... ... -.-+|.+.. ++.. .++
T Consensus 114 ~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~ 193 (312)
T 3jr1_A 114 NKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIV 193 (312)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHH
T ss_pred cCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 987652 1 2333111 000 012455432 1111 111
Q ss_pred H-HHHHhhh-ccCCCeEecCCCCCcEEecCCCcEEEeccc
Q 002346 695 R-GVEYLHS-LAQQSFIHRDLKPSNILIGDDMRAKVADFG 732 (933)
Q Consensus 695 ~-~l~~LH~-~~~~~ivH~Dik~~Nill~~~~~~kl~DfG 732 (933)
+ ....|.. .....+||+|+.+.|++++.++ +.|.||.
T Consensus 194 ~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 194 QIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 1 1223321 1246899999999999999887 8899984
No 426
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.74 E-value=0.00011 Score=81.96 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=50.4
Q ss_pred CCccccCCCeEEEEEEeC-CCcEEEEEEeccccC--C---chhHHHHHHHHHHHHhcCC--Cc-ceeEEeEeeeCceeEE
Q 002346 586 ANILGRGGFGVVYGGELP-DGTKIAVKRMESNTM--G---NKGLSEFQAEIAVLTKVRH--RH-LVALLGYCINGSERLL 656 (933)
Q Consensus 586 ~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~---~~~~~~~~~E~~~l~~l~h--~n-iv~l~~~~~~~~~~~l 656 (933)
.+.||.|.++.||++... +++.|+||....... . ....+++..|.++++.+.. +. +.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 467999999999999654 468899998653211 0 1123467789899888742 43 4455554 3445689
Q ss_pred EEeecCCC
Q 002346 657 VYEYMPRG 664 (933)
Q Consensus 657 v~e~~~~g 664 (933)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999763
No 427
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.62 E-value=0.00017 Score=76.29 Aligned_cols=80 Identities=21% Similarity=0.222 Sum_probs=58.6
Q ss_pred cCCccCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC-C--CcceeEEeEeeeCceeEEE
Q 002346 581 DNFSEANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR-H--RHLVALLGYCINGSERLLV 657 (933)
Q Consensus 581 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~~~~~~lv 657 (933)
.....++.+|.|..+.||+.+..+|+.|+||+-.... ......|.+|+..|+.+. . -.+.+++++. ..++|
T Consensus 15 ~~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~--~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv 88 (288)
T 3f7w_A 15 REVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDA--PALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLA 88 (288)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTC--CCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEE
T ss_pred CCeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCC--cchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEE
Confidence 4556678899999999999999999999999865442 222346889999999884 2 2345556542 34789
Q ss_pred EeecCCCCh
Q 002346 658 YEYMPRGTL 666 (933)
Q Consensus 658 ~e~~~~gsL 666 (933)
|||++++..
T Consensus 89 ~e~l~~~~~ 97 (288)
T 3f7w_A 89 MEWVDERPP 97 (288)
T ss_dssp EECCCCCCC
T ss_pred EEeecccCC
Confidence 999987654
No 428
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.53 E-value=0.00062 Score=76.30 Aligned_cols=78 Identities=22% Similarity=0.219 Sum_probs=48.4
Q ss_pred CCCeEecCCCCCcEEecCCCcEEEecccccccCCCCCceeeccccc--ccCcccccccCCC---CCCCccchHhHHHHHH
Q 002346 705 QQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPDGKYSVETRLAG--TFGYLAPEYAATG---RVTTKIDVYAFGVVLM 779 (933)
Q Consensus 705 ~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~g--t~~y~aPE~~~~~---~~~~~~Dv~SlG~~l~ 779 (933)
...++|+|+++.||+++.++ ++|+||+.+........- ....+ ...|++|+..... ......++......+|
T Consensus 231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dl--a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (420)
T 2pyw_A 231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDI--GAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTW 307 (420)
T ss_dssp CCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHH--HHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHH--HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHH
Confidence 37899999999999998876 999999987643321110 00000 1345666655321 1122345567788888
Q ss_pred HHHcCC
Q 002346 780 ETITGR 785 (933)
Q Consensus 780 elltG~ 785 (933)
+.++++
T Consensus 308 ~~y~~~ 313 (420)
T 2pyw_A 308 NLFNKR 313 (420)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 429
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.39 E-value=0.0015 Score=70.25 Aligned_cols=160 Identities=12% Similarity=0.118 Sum_probs=89.8
Q ss_pred ecHHHHHHHhcCCcc-----CCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCc--cee
Q 002346 571 ISIEVLRQVTDNFSE-----ANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRH--LVA 643 (933)
Q Consensus 571 ~~~~~l~~~~~~~~~-----~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~ 643 (933)
++.+++..+-..|.+ .+.|+.|....+|+....+| .+++|...... . ..++..|+.++..+.... +.+
T Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~-~---~~~l~~e~~~l~~L~~~g~~vP~ 81 (322)
T 2ppq_A 7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV-E---KNDLPFFLGLMQHLAAKGLSCPL 81 (322)
T ss_dssp CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-------CCHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCC-C---HHHHHHHHHHHHHHHHCCCCCCc
Confidence 455666666666765 34566788889999987555 68899886531 1 134566777777774212 333
Q ss_pred EEeE------eeeCceeEEEEeecCCCChhh--------------HhhhcccC-CC------CCCCHHHHHH--------
Q 002346 644 LLGY------CINGSERLLVYEYMPRGTLAQ--------------HLFEWHDH-GY------TPLTWKQRVT-------- 688 (933)
Q Consensus 644 l~~~------~~~~~~~~lv~e~~~~gsL~~--------------~l~~~~~~-~~------~~l~~~~~~~-------- 688 (933)
++.. ....+..+++|+|++|..+.. .+|..... .. ....|.....
T Consensus 82 ~~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 161 (322)
T 2ppq_A 82 PLPRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADE 161 (322)
T ss_dssp BCCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGG
T ss_pred ccCCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHh
Confidence 3321 122456789999998865421 12211000 00 0012322111
Q ss_pred ----HHHHHHHHHHHhhhc----cCCCeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 689 ----IALDVARGVEYLHSL----AQQSFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 689 ----i~~~i~~~l~~LH~~----~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
+...+.+.++++++. ...+++|+|+.+.||+++++..+.|+||+.+.
T Consensus 162 ~~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 162 VEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp TSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 011234455555532 13579999999999999987666899998654
No 430
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=97.32 E-value=0.00084 Score=72.60 Aligned_cols=144 Identities=17% Similarity=0.122 Sum_probs=75.3
Q ss_pred CccccCCCeE-EEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC-C-CcceeEEeEeeeCceeEEEEeecCC
Q 002346 587 NILGRGGFGV-VYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR-H-RHLVALLGYCINGSERLLVYEYMPR 663 (933)
Q Consensus 587 ~~lg~G~~g~-Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h-~niv~l~~~~~~~~~~~lv~e~~~~ 663 (933)
+.|+.|+... +|+....+|+.+++|....... .++..|+.+++.+. + -.+.+++.+....+ +++||++.+
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~-----~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~ 96 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEEG-----GDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGD 96 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTTT-----CCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCS
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCCC-----ccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCC
Confidence 4566565544 6777664477888886544310 23455677777663 2 23556776643333 789999977
Q ss_pred CChhhHhhhc------------------ccC---CCCCCCHHHHH-------H-------------HHHHHHHHHHHhhh
Q 002346 664 GTLAQHLFEW------------------HDH---GYTPLTWKQRV-------T-------------IALDVARGVEYLHS 702 (933)
Q Consensus 664 gsL~~~l~~~------------------~~~---~~~~l~~~~~~-------~-------------i~~~i~~~l~~LH~ 702 (933)
..+.+++... +.. ....++..... . ....+.+.++.+.+
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~ 176 (333)
T 3csv_A 97 ALFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILS 176 (333)
T ss_dssp CBHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred cchHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 6665444221 110 11112221110 0 00111122222211
Q ss_pred ---ccCCCeEecCCCCCcEEecCC----CcEEEecccccccC
Q 002346 703 ---LAQQSFIHRDLKPSNILIGDD----MRAKVADFGLVKNA 737 (933)
Q Consensus 703 ---~~~~~ivH~Dik~~Nill~~~----~~~kl~DfGla~~~ 737 (933)
.....++|||+.+.||+++.+ +.+.|+||+.+..-
T Consensus 177 ~~~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G 218 (333)
T 3csv_A 177 AQLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG 218 (333)
T ss_dssp HHCCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred hcccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence 123689999999999999875 67999999987643
No 431
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=97.28 E-value=0.003 Score=68.05 Aligned_cols=158 Identities=10% Similarity=0.042 Sum_probs=88.8
Q ss_pred cHHHHHHHhcCCcc-----CCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCC--cceeE
Q 002346 572 SIEVLRQVTDNFSE-----ANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHR--HLVAL 644 (933)
Q Consensus 572 ~~~~l~~~~~~~~~-----~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~--niv~l 644 (933)
+.+.+..+-+.|.+ ...++ |....||+....+|+.+++|....... ....+..|..++..+... .++++
T Consensus 12 ~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~---~~~~~~~E~~~~~~L~~~g~~vp~~ 87 (328)
T 1zyl_A 12 HPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPERW---TADQILEEHQFALQLVNDEVPVAAP 87 (328)
T ss_dssp CHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCTTCCCEEEEEECTTTS---CHHHHHHHHHHHHHHHHTTCSBCCC
T ss_pred CHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcCCCCEEEEEEcCCCCC---CHHHHHHHHHHHHHHHHcCCeecce
Confidence 34444444444432 34566 778899998877788899999864322 234667788888877421 24444
Q ss_pred EeE-----eeeCceeEEEEeecCCCChh-----------hH---hhhcccC----CCCCCCHHHH----HHH--------
Q 002346 645 LGY-----CINGSERLLVYEYMPRGTLA-----------QH---LFEWHDH----GYTPLTWKQR----VTI-------- 689 (933)
Q Consensus 645 ~~~-----~~~~~~~~lv~e~~~~gsL~-----------~~---l~~~~~~----~~~~l~~~~~----~~i-------- 689 (933)
+.. ...++..++||||++|..+. .. +|..... .....++... ..+
T Consensus 88 ~~~~g~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (328)
T 1zyl_A 88 VAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIP 167 (328)
T ss_dssp CCBTTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSC
T ss_pred eecCCcEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCC
Confidence 443 12245668899999875432 11 1211000 0011222211 001
Q ss_pred -------HHHHHHHHHHhhhc----cCCCeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 690 -------ALDVARGVEYLHSL----AQQSFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 690 -------~~~i~~~l~~LH~~----~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
...+.+.++.+.+. ....++|+|+++.||+++ + .+.|+||+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~ 222 (328)
T 1zyl_A 168 SGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDAR 222 (328)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCC
Confidence 11111223333211 235689999999999999 4 89999998765
No 432
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.20 E-value=0.00011 Score=70.46 Aligned_cols=82 Identities=17% Similarity=0.122 Sum_probs=40.3
Q ss_pred CceeccccccccCCCCCcccCCCCCCEEEccCCC-CCCCCCCCccccCC----ccCCeeeccCcc-cCCCCChhhcCCCC
Q 002346 115 LQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNP-NLAPWPFPNELTKS----TSLTTLYMDNAN-IFGLIPDFFDSFSN 188 (933)
Q Consensus 115 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-~~~~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~ 188 (933)
|+.|||+++.|+......+.++++|+.|+|+++. ++.. --..+..+ ++|++|+|++|. ++..--..+..+++
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~--gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG--CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH--HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH--HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4444444444333333334445555555555553 2220 01122332 246666666653 54433345667788
Q ss_pred CCEEEccCCc
Q 002346 189 LQNLRLSYNN 198 (933)
Q Consensus 189 L~~L~L~~N~ 198 (933)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888887765
No 433
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.16 E-value=0.00085 Score=71.39 Aligned_cols=71 Identities=11% Similarity=0.062 Sum_probs=45.2
Q ss_pred CCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcc-eeEEeEeeeCceeEEEEeec-CC
Q 002346 586 ANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHL-VALLGYCINGSERLLVYEYM-PR 663 (933)
Q Consensus 586 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~-~~ 663 (933)
.+.|+.|....+|+. +.+++|+....... ..+..+|+.+++.+....+ .++++++ .+.-++|+||+ ++
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~---~~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~g 92 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEE---YINRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAGA 92 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC-------CCCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTTC
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCccc---eeCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCCC
Confidence 678999999999998 56888987653111 1123568877777742223 4666543 33447899999 66
Q ss_pred CCh
Q 002346 664 GTL 666 (933)
Q Consensus 664 gsL 666 (933)
.++
T Consensus 93 ~~l 95 (301)
T 3dxq_A 93 QTM 95 (301)
T ss_dssp EEC
T ss_pred ccC
Confidence 544
No 434
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.09 E-value=6.6e-05 Score=73.33 Aligned_cols=94 Identities=11% Similarity=0.155 Sum_probs=49.6
Q ss_pred hhhcCCCCCCEEEccCCcCCCCCCccccccccchhhcccccCCcccccccccCCccCcEEEecCCccCCCCC-----CCC
Q 002346 181 DFFDSFSNLQNLRLSYNNFTGSLPASFAKSDIQNLWMNDQQLGLSGTLDVLSGMTQLRQVWLHKNQFTGPIP-----DLS 255 (933)
Q Consensus 181 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~l~l~~n~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-----~~~ 255 (933)
+.+..-+.|+.|+|++|+|....-..++. .+...+.|+.|+|+.|+|+...- .+.
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~--------------------aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~ 123 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIE--------------------LIETSPSLRVLNVESNFLTPELLARLLRSTL 123 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHH--------------------HHHHCSSCCEEECCSSBCCHHHHHHHHHHTT
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHH--------------------HHhcCCccCeEecCCCcCCHHHHHHHHHHHh
Confidence 44445556666666666665333222221 22224556666666666654211 244
Q ss_pred CCCCCCEEEccCC---cccc----cCcccccCCCCCCEEEccCccC
Q 002346 256 KCESLFDLSLRDN---QLTG----VVPASVISLPALLNISLQNNKL 294 (933)
Q Consensus 256 ~~~~L~~L~L~~N---~l~~----~~p~~l~~l~~L~~L~Ls~N~l 294 (933)
..+.|+.|+|++| .+.. .+.+.+..-+.|+.|+++.|..
T Consensus 124 ~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 124 VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 5556777777654 3332 2344455556777777766554
No 435
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.99 E-value=0.00087 Score=61.11 Aligned_cols=38 Identities=32% Similarity=0.532 Sum_probs=31.0
Q ss_pred CcCceeccccccccCCCCCcccCCCCCCEEEccCCCCC
Q 002346 113 TSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNL 150 (933)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~~~ 150 (933)
.+|++|+|++|+|+.++.+.|..+++|+.|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 45788888888888888888888888888888888654
No 436
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.97 E-value=0.003 Score=69.08 Aligned_cols=143 Identities=14% Similarity=0.198 Sum_probs=84.4
Q ss_pred CCccccCCCeEEEEEEeC--------CCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC-CCcceeEEeEeeeCceeEE
Q 002346 586 ANILGRGGFGVVYGGELP--------DGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR-HRHLVALLGYCINGSERLL 656 (933)
Q Consensus 586 ~~~lg~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~l 656 (933)
++.|..|-...+|+.... +++.|++|+.... ......+.+|.++++.+. +.-..++++++.+ .+
T Consensus 55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~---~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~ 127 (379)
T 3feg_A 55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI---LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GR 127 (379)
T ss_dssp CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC------CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EE
T ss_pred EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc---cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----cc
Confidence 356777777899998764 2578999985332 123456779999998884 3334667776643 28
Q ss_pred EEeecCCCChhh--------------HhhhcccC---CCCCCC--HHHHHHHHHHHHH-------------------HHH
Q 002346 657 VYEYMPRGTLAQ--------------HLFEWHDH---GYTPLT--WKQRVTIALDVAR-------------------GVE 698 (933)
Q Consensus 657 v~e~~~~gsL~~--------------~l~~~~~~---~~~~l~--~~~~~~i~~~i~~-------------------~l~ 698 (933)
||||++|.+|.. .|.+.+.. ...+.. |.++.++..++.. .+.
T Consensus 128 v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (379)
T 3feg_A 128 LEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMG 207 (379)
T ss_dssp EEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHH
T ss_pred EEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHH
Confidence 999999865531 11111111 111222 4555555544322 223
Q ss_pred Hhhh----c-cCCCeEecCCCCCcEEecCC----CcEEEecccccc
Q 002346 699 YLHS----L-AQQSFIHRDLKPSNILIGDD----MRAKVADFGLVK 735 (933)
Q Consensus 699 ~LH~----~-~~~~ivH~Dik~~Nill~~~----~~~kl~DfGla~ 735 (933)
.|.+ . ....++|+|+.+.||+++.+ +.+.++||..+.
T Consensus 208 ~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~ 253 (379)
T 3feg_A 208 NLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS 253 (379)
T ss_dssp HHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred HHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence 3321 1 23578999999999999876 789999998764
No 437
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.85 E-value=0.0026 Score=71.22 Aligned_cols=73 Identities=21% Similarity=0.233 Sum_probs=49.8
Q ss_pred CCccccCCCeEEEEEEeCC--------CcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCc-ceeEEeEeeeCceeEE
Q 002346 586 ANILGRGGFGVVYGGELPD--------GTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRH-LVALLGYCINGSERLL 656 (933)
Q Consensus 586 ~~~lg~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~l 656 (933)
.+.|+.|....+|+....+ ++.|++|+..... . ...+.+|..+++.+...+ ..++++.+.+ .+
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~-~---~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~ 149 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE-T---ESHLVAESVIFTLLSERHLGPKLYGIFSG----GR 149 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC-C---HHHHHHHHHHHHHHHHTTSSSCEEEEETT----EE
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCC-c---HHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CE
Confidence 4568888889999997653 5789999874321 1 135567999988884333 3567776542 38
Q ss_pred EEeecCCCCh
Q 002346 657 VYEYMPRGTL 666 (933)
Q Consensus 657 v~e~~~~gsL 666 (933)
||||++|.++
T Consensus 150 v~e~l~G~~l 159 (429)
T 1nw1_A 150 LEEYIPSRPL 159 (429)
T ss_dssp EECCCCEEEC
T ss_pred EEEEeCCccc
Confidence 9999986444
No 438
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.84 E-value=8.7e-05 Score=72.46 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=41.6
Q ss_pred ccCccccCCcccceeecccc-ccccc-----CCCccCcCcCceeccccccccCCCCC----cccCCCCCCEEEccCCCCC
Q 002346 81 TLSPEISSLTQLETLSFQMN-NIAGA-----IPSLANATSLQDIYLDNNNFTSVPTG----CFDGLTNLQVLSLSDNPNL 150 (933)
Q Consensus 81 ~~~~~~~~l~~L~~L~l~~N-~l~~~-----~p~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~~~ 150 (933)
.+...+.+.+.|++|+|++| +|... ...+..-+.|+.|+|++|+|+..... .+...+.|+.|+|+.|.|.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34445566778888888875 66431 11355566777777777777643222 2334455666666666554
Q ss_pred C
Q 002346 151 A 151 (933)
Q Consensus 151 ~ 151 (933)
.
T Consensus 112 ~ 112 (197)
T 1pgv_A 112 P 112 (197)
T ss_dssp H
T ss_pred H
Confidence 3
No 439
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.71 E-value=0.00043 Score=66.24 Aligned_cols=34 Identities=21% Similarity=0.102 Sum_probs=16.6
Q ss_pred cCcEEEecCCc-cCCC-CCCCCCCCCCCEEEccCCc
Q 002346 236 QLRQVWLHKNQ-FTGP-IPDLSKCESLFDLSLRDNQ 269 (933)
Q Consensus 236 ~L~~L~L~~N~-l~~~-~~~~~~~~~L~~L~L~~N~ 269 (933)
+|++|+|++|. ++.. +..+..+++|+.|+|+++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 45555555543 4331 1124455666666666553
No 440
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.63 E-value=0.0087 Score=64.64 Aligned_cols=64 Identities=5% Similarity=0.076 Sum_probs=42.3
Q ss_pred CeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcC---CCcceeEEeE------eeeCceeEEEEeecCCC
Q 002346 594 FGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR---HRHLVALLGY------CINGSERLLVYEYMPRG 664 (933)
Q Consensus 594 ~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~------~~~~~~~~lv~e~~~~g 664 (933)
...||+....+| .+++|+...... ..|+.++..|. -|.+++++.. ....+..++||+|++|.
T Consensus 36 ~N~vy~v~~~~g-~~vLK~~~~~~~--------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i~G~ 106 (339)
T 3i1a_A 36 NAFAYQADSESK-SYFIKLKYGYHD--------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIHAP 106 (339)
T ss_dssp SCEEEEEECSSC-EEEEEEEECSSC--------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECCCCC
T ss_pred ccceEEEEeCCC-CEEEEEecCccc--------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEeccCCC
Confidence 579999988777 899998765431 34556665552 2224555432 23356778999999987
Q ss_pred Ch
Q 002346 665 TL 666 (933)
Q Consensus 665 sL 666 (933)
.+
T Consensus 107 ~~ 108 (339)
T 3i1a_A 107 NG 108 (339)
T ss_dssp BT
T ss_pred cC
Confidence 65
No 441
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.47 E-value=0.013 Score=65.76 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=47.8
Q ss_pred CCccccCCCeEEEEEEeCC-CcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcc-eeEEeEeeeCceeEEEEeecCC
Q 002346 586 ANILGRGGFGVVYGGELPD-GTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHL-VALLGYCINGSERLLVYEYMPR 663 (933)
Q Consensus 586 ~~~lg~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~ 663 (933)
++.|+.|-...+|+....+ +..+++|+..... .. .-+..+|..+++.+...++ .++++++. + .+||||++|
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~--~~-~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G 185 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKT--DE-IINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDG 185 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-C--CS-CSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCS
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCCh--hh-hcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCC
Confidence 3568888889999998754 4788999875431 11 1122588899998864444 56777663 2 359999987
Q ss_pred CCh
Q 002346 664 GTL 666 (933)
Q Consensus 664 gsL 666 (933)
.+|
T Consensus 186 ~~l 188 (458)
T 2qg7_A 186 YAL 188 (458)
T ss_dssp EEC
T ss_pred ccC
Confidence 544
No 442
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.39 E-value=0.0051 Score=55.95 Aligned_cols=56 Identities=25% Similarity=0.246 Sum_probs=46.8
Q ss_pred cEEEecCCccC--CCCCCCCCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCccCc
Q 002346 238 RQVWLHKNQFT--GPIPDLSKCESLFDLSLRDNQLTGVVPASVISLPALLNISLQNNKLQ 295 (933)
Q Consensus 238 ~~L~L~~N~l~--~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 295 (933)
..++.+++.|+ .++..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47889999998 5554443 56999999999999777778899999999999999987
No 443
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.38 E-value=0.006 Score=66.90 Aligned_cols=74 Identities=14% Similarity=0.119 Sum_probs=44.5
Q ss_pred CCccccCCCeEEEEEEeCC---------CcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCc-ceeEEeEeeeCceeE
Q 002346 586 ANILGRGGFGVVYGGELPD---------GTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRH-LVALLGYCINGSERL 655 (933)
Q Consensus 586 ~~~lg~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~ 655 (933)
.+.|+.|..-.+|+....+ ++.+++|+..... ....+...|..+++.+...+ +.++++.. . -+
T Consensus 38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~---~~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~ 110 (369)
T 3c5i_A 38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHV---DELYNTISEFEVYKTMSKYKIAPQLLNTF--N--GG 110 (369)
T ss_dssp EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTG---GGTSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TE
T ss_pred EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCc---cceecHHHHHHHHHHHHhcCCCCceEEec--C--Cc
Confidence 3567778888999997643 2688888765431 11112467888888884323 44666544 2 36
Q ss_pred EEEeecCCCCh
Q 002346 656 LVYEYMPRGTL 666 (933)
Q Consensus 656 lv~e~~~~gsL 666 (933)
+||||++|..+
T Consensus 111 ~v~e~i~G~~l 121 (369)
T 3c5i_A 111 RIEEWLYGDPL 121 (369)
T ss_dssp EEEECCCSEEC
T ss_pred EEEEEecCCcC
Confidence 89999987543
No 444
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=96.32 E-value=0.039 Score=53.97 Aligned_cols=103 Identities=14% Similarity=0.109 Sum_probs=66.6
Q ss_pred CChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCCcEEecCCCcEEEecccccccCCCCCce
Q 002346 664 GTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILIGDDMRAKVADFGLVKNAPDGKYS 743 (933)
Q Consensus 664 gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~~~~~~~~~ 743 (933)
-+|.+.|..+ ..+++++++|.++.|.+++|.-.-... .. ..+=+.|..|++..+|.|.+.+ +.+.
T Consensus 33 vSL~eIL~~~----~~PlsEEqaWALc~Qc~~~L~~~~~~~-~~-~~~i~~~~~i~l~~dG~V~f~~-~~s~-------- 97 (229)
T 2yle_A 33 LSLEEILRLY----NQPINEEQAWAVCYQCCGSLRAAARRR-QP-RHRVRSAAQIRVWRDGAVTLAP-AADD-------- 97 (229)
T ss_dssp EEHHHHHHHH----TSCCCHHHHHHHHHHHHHHHHHHHHTT-CC-CCCCCSGGGEEEETTSCEEECC-C-----------
T ss_pred ccHHHHHHHc----CCCcCHHHHHHHHHHHHHHHHhhhhcc-cC-CceecCCcceEEecCCceeccc-cccc--------
Confidence 3788988663 368999999999999999987762100 11 1233457999999999998763 1110
Q ss_pred eecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCC
Q 002346 744 VETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKA 787 (933)
Q Consensus 744 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p 787 (933)
.....+.|||... ...+.+.=|||+|+++|..+--..|
T Consensus 98 -----~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 98 -----AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp --------------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred -----ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 1122456888763 3556788999999999999864443
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=95.79 E-value=0.023 Score=62.26 Aligned_cols=145 Identities=16% Similarity=0.212 Sum_probs=82.4
Q ss_pred CccccCCCeEEEEEEeCC--------CcEEEEEEeccccC------------Cch----hHHHHHHHHHHHHhcC-CCcc
Q 002346 587 NILGRGGFGVVYGGELPD--------GTKIAVKRMESNTM------------GNK----GLSEFQAEIAVLTKVR-HRHL 641 (933)
Q Consensus 587 ~~lg~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~------------~~~----~~~~~~~E~~~l~~l~-h~ni 641 (933)
+.|..|-...+|+....+ ++.|.+++.-.... +.+ ..+....|..+++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 456667777899987753 36788887644211 000 0012335888888884 4445
Q ss_pred eeEEeEeeeCceeEEEEeecCCCChhh--------------HhhhcccC---CCCCCC--HHHHHHHHHHHH--------
Q 002346 642 VALLGYCINGSERLLVYEYMPRGTLAQ--------------HLFEWHDH---GYTPLT--WKQRVTIALDVA-------- 694 (933)
Q Consensus 642 v~l~~~~~~~~~~~lv~e~~~~gsL~~--------------~l~~~~~~---~~~~l~--~~~~~~i~~~i~-------- 694 (933)
.++++++.. .+|+||+++.+|.. .+.+.+.. ...... |.++.++..++.
T Consensus 138 Pkl~~~~~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 677777643 28999998755422 11111111 111222 334444443321
Q ss_pred --------------HHH----HHhhhc-cCCCeEecCCCCCcEEecCC------CcEEEecccccc
Q 002346 695 --------------RGV----EYLHSL-AQQSFIHRDLKPSNILIGDD------MRAKVADFGLVK 735 (933)
Q Consensus 695 --------------~~l----~~LH~~-~~~~ivH~Dik~~Nill~~~------~~~kl~DfGla~ 735 (933)
+-+ +++... ....++|+|+.+.||+++.+ +.+.++||..+.
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~ 279 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCC
Confidence 112 222221 23568899999999999887 789999998754
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=95.42 E-value=0.028 Score=62.21 Aligned_cols=142 Identities=12% Similarity=0.160 Sum_probs=84.1
Q ss_pred CCccccCCCeEEEEEEeCC--------CcEEEEEEeccccCCchhHHHHHHHHHHHHhcC-CCcceeEEeEeeeCceeEE
Q 002346 586 ANILGRGGFGVVYGGELPD--------GTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVR-HRHLVALLGYCINGSERLL 656 (933)
Q Consensus 586 ~~~lg~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~l 656 (933)
++.+..|-.-.+|+....+ ++.|++|+..... ...-+..+|..+++.+. +.-..++++.+. -++
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t---~~~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~ 147 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV---GKFYDSKVELDVFRYLSNINIAPNIIADFP----EGR 147 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC----CCCCHHHHHHHHHHHHHTTSSCCEEEEET----TEE
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc---chhcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCE
Confidence 4567777778999997753 5789999864431 11123457888888884 333456665432 278
Q ss_pred EEeecCCCChhh--------------H---hhhccc-----C---CCCCCCHHHHHHHHHHHH-----------------
Q 002346 657 VYEYMPRGTLAQ--------------H---LFEWHD-----H---GYTPLTWKQRVTIALDVA----------------- 694 (933)
Q Consensus 657 v~e~~~~gsL~~--------------~---l~~~~~-----~---~~~~l~~~~~~~i~~~i~----------------- 694 (933)
||||++|.+|.. . +|.... . +..+--|.++.++..++-
T Consensus 148 I~efI~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~~~L~~~~~~~p~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 227 (424)
T 3mes_A 148 IEEFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRADFPSRFDKEPILFKRIYLWREEAKIQVSKNNFQIDKELYSK 227 (424)
T ss_dssp EEECCCSEECCTGGGGSHHHHHHHHHHHHHHHTHHHHCTTSCTTSCCSCCHHHHHHHHHHHHHHHHHTCC--CCHHHHHH
T ss_pred EEEEeCCccCChhhcCCHHHHHHHHHHHHHHhcCchhhccCccccCCCCcHHHHHHHHHHHHHHhhcccchhhccccHHH
Confidence 999999866421 1 111111 0 112223444444433321
Q ss_pred --HHHHHhhh---------------------ccCCCeEecCCCCCcEEecCCCcEEEecccccc
Q 002346 695 --RGVEYLHS---------------------LAQQSFIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 695 --~~l~~LH~---------------------~~~~~ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
..+..|.+ .....++|+|+.+.||+ +.++.+.++||..+.
T Consensus 228 l~~e~~~L~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~ 290 (424)
T 3mes_A 228 ILEEIDQLEELIMGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLL-QTQNNIRMIDYEYSA 290 (424)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHTTCGGGCEEEECSCCCGGGEE-ECSSCEEECCCTTCE
T ss_pred HHHHHHHHHHHHhhhcccccccccccccccCCCCceEECCCCCcccee-cCCCcEEEEecccCC
Confidence 22233321 11356889999999999 888899999998765
No 447
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=90.94 E-value=0.18 Score=34.00 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=20.5
Q ss_pred CCccceeehhhhHHHHHHHHHHHHHHHHHHhh
Q 002346 480 SKLSVGTIVAIVVVVVIFIAVVFFVVYKFIAR 511 (933)
Q Consensus 480 ~~~~~~~i~~~v~~~~~~i~~~~~~~~~~~~r 511 (933)
++++.+.|.++++++++.++++..+.+++++|
T Consensus 6 ~~ls~GaIAGiVvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 6 RGLTGGEIVAVIFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCceeeeehHHHHHHHHHHHHHHHHeec
Confidence 45567778888887776666655555555433
No 448
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=88.60 E-value=0.53 Score=32.82 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=12.9
Q ss_pred eehhhhHHHHHHHHHHHHHHHHHHhhhcc
Q 002346 486 TIVAIVVVVVIFIAVVFFVVYKFIARRKH 514 (933)
Q Consensus 486 ~i~~~v~~~~~~i~~~~~~~~~~~~rr~~ 514 (933)
.|++.|++.+++++++.++++++.+||+.
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 34444444333333444444555455443
No 449
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=88.34 E-value=1.6 Score=42.60 Aligned_cols=116 Identities=11% Similarity=0.111 Sum_probs=79.4
Q ss_pred CCCcceeEEeEeeeCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhhhccCCCeEecCCCCC
Q 002346 637 RHRHLVALLGYCINGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPS 716 (933)
Q Consensus 637 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik~~ 716 (933)
.||+++.. .+-..++...+.|+.-+.+.=...+ ...+...+++++..|+....++++ -+|--+.|+
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~i--------k~~~~~eKlr~l~ni~~l~~~~~~-----r~tf~L~P~ 108 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDNI--------KSFTKNEKLRYLLNIKNLEEVNRT-----RYTFVLAPD 108 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGGG--------GGSCHHHHHHHHHHGGGGGGGGGS-----SEECCCSGG
T ss_pred cCCcccce-EEEEcccEEEEEEEcCcccCCHHHH--------HhcCHHHHHHHHHHHHHHHHHhcC-----ceEEEEecc
Confidence 58888866 4556666666767654422222223 347889999999999998866664 378889999
Q ss_pred cEEecCCCcEEEecccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCC
Q 002346 717 NILIGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALD 789 (933)
Q Consensus 717 Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~ 789 (933)
|++++.++.+++.--|+-... +|. ..++..=.-.+=+++..+++++..|+
T Consensus 109 NL~f~~~~~p~i~~RGik~~l------------------~P~-----~~~ee~fL~qyKAliiall~~K~~Fe 158 (215)
T 4ann_A 109 ELFFTRDGLPIAKTRGLQNVV------------------DPL-----PVSEAEFLTRYKALVICAFNEKQSFD 158 (215)
T ss_dssp GEEECTTSCEEESCCEETTTB------------------SCC-----CCCHHHHHHHHHHHHHHHHCTTCCHH
T ss_pred eEEEcCCCCEEEEEccCccCC------------------CCC-----CCCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999876653322 222 11111123367789999999998875
No 450
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=88.03 E-value=1.9 Score=47.20 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=24.3
Q ss_pred CeEecCCCCCcEEe------cCCCcEEEecccccc
Q 002346 707 SFIHRDLKPSNILI------GDDMRAKVADFGLVK 735 (933)
Q Consensus 707 ~ivH~Dik~~Nill------~~~~~~kl~DfGla~ 735 (933)
.++|+|+.+.||++ +++..++++||.+|.
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~ 279 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhcc
Confidence 35799999999999 456779999998765
No 451
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=87.68 E-value=0.61 Score=32.43 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=12.3
Q ss_pred eehhhhHHHHHHHHHHHHHHHHHHhhhcc
Q 002346 486 TIVAIVVVVVIFIAVVFFVVYKFIARRKH 514 (933)
Q Consensus 486 ~i~~~v~~~~~~i~~~~~~~~~~~~rr~~ 514 (933)
.|++.|++.+++++++.++++++.+||+.
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred eEEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 34444444333333334444444444443
No 452
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=86.56 E-value=0.094 Score=58.93 Aligned_cols=62 Identities=5% Similarity=0.062 Sum_probs=18.0
Q ss_pred cCCccccCCCeEEEEEEeCC-CcEEEE------EEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeEee
Q 002346 585 EANILGRGGFGVVYGGELPD-GTKIAV------KRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGYCI 649 (933)
Q Consensus 585 ~~~~lg~G~~g~Vy~~~~~~-~~~vav------K~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 649 (933)
+.+.|| ||.||+|.+.. ..+||| |..+....+.+....|.+|..+++.++|||+++.+++..
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 456676 99999997743 367888 777665555556678899999999999999999988764
No 453
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=84.63 E-value=0.98 Score=31.35 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=12.1
Q ss_pred eehhhhHHHHHHHHHHHHHHHHHHhhhcc
Q 002346 486 TIVAIVVVVVIFIAVVFFVVYKFIARRKH 514 (933)
Q Consensus 486 ~i~~~v~~~~~~i~~~~~~~~~~~~rr~~ 514 (933)
.++++++++ ++++++.++++++.+||+.
T Consensus 13 ~Ia~~vVGv-ll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 13 SIISAVVGI-LLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHCS
T ss_pred chHHHHHHH-HHHHHHHHHHHhheehhhh
Confidence 345555552 2333333344444455443
No 454
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=83.54 E-value=3.6 Score=40.28 Aligned_cols=115 Identities=11% Similarity=0.093 Sum_probs=78.9
Q ss_pred CCCcceeEEeEeeeCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHHHHHH-HhhhccCCCeEecCCCC
Q 002346 637 RHRHLVALLGYCINGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVARGVE-YLHSLAQQSFIHRDLKP 715 (933)
Q Consensus 637 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~-~LH~~~~~~ivH~Dik~ 715 (933)
.||++ -...-.+++...+.|+.-+++.=...+ ...+..++++++..++.... ++++ -+|--+.|
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i--------~~~~~~eKlrll~nl~~L~~~~~~~-----r~tf~l~P 112 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAI--------RKTTLLSRIRAAIHLVSKVKHHSAR-----RLIFIVCP 112 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHH--------HTSCHHHHHHHHHHHHHHHSSCCSS-----SEECCCCG
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHH--------HhcCHHHHHHHHHHHHHHHHHhhhC-----ceeEEEeC
Confidence 58888 344446677777777765444333344 23788999999999999877 6654 47788999
Q ss_pred CcEEecCCCcEEEecccccccCCCCCceeecccccccCcccccccCCCCCCCccchHhHHHHHHHHHcCCCCCC
Q 002346 716 SNILIGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKIDVYAFGVVLMETITGRKALD 789 (933)
Q Consensus 716 ~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~~l~elltG~~p~~ 789 (933)
+|+++|.++.++|.-.|+-.. ++|.-.. +..=.-.+=+++..++.++..|+
T Consensus 113 ~NL~f~~~~~p~i~hRGi~~~------------------lpP~e~~-----ee~fl~qyKali~all~~K~~Fe 163 (219)
T 4ano_A 113 ENLMFNRALEPFFLHVGVKES------------------LPPDEWD-----DERLLREVKATVLALTEGEYRFD 163 (219)
T ss_dssp GGEEECTTCCEEESCCEETTT------------------BSSCSCC-----HHHHHHHHHHHHHHHTTCSSCHH
T ss_pred ceEEEeCCCcEEEEEcCCccc------------------CCCCCCC-----HHHHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999987775322 2222111 11112367788899999987774
No 455
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.53 E-value=18 Score=30.46 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=27.0
Q ss_pred ccccCCCCCcccCCCCCCEEEccCCCCCCCCCCCccccCCccCCeeeccC
Q 002346 123 NNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDN 172 (933)
Q Consensus 123 N~l~~~~~~~~~~l~~L~~L~Ls~N~~~~~~~~p~~~~~l~~L~~L~L~~ 172 (933)
..++.|...+|.++++|+.+.|-.+ ++. .-..+|.++.+|+.+.+..
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~--Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGL--LYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSC--CCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hhe--EcHHHHhccCCccEEEEcC
Confidence 3455666666666666666666554 222 2234566666666666654
No 456
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.31 E-value=22 Score=29.83 Aligned_cols=45 Identities=27% Similarity=0.394 Sum_probs=32.2
Q ss_pred ccccCC-CccCcCcCceeccccccccCCCCCcccCCCCCCEEEccCC
Q 002346 102 IAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDN 147 (933)
Q Consensus 102 l~~~~p-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 147 (933)
++.+-. .|.++.+|+.+.|-. .++.|...+|.++.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 343333 577777777777765 467788888888888888888664
No 457
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=42.69 E-value=15 Score=23.76 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=16.7
Q ss_pred cceeehhhhHHHHHHHHHHHHHHHHH
Q 002346 483 SVGTIVAIVVVVVIFIAVVFFVVYKF 508 (933)
Q Consensus 483 ~~~~i~~~v~~~~~~i~~~~~~~~~~ 508 (933)
+.+.+++++++.++..+++.+.+|++
T Consensus 5 ~~gaIaGIVvgdi~~t~~i~~~vy~~ 30 (33)
T 2l34_A 5 SPGVLAGIVVGDLVLTVLIALAVYFL 30 (33)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEeEeHHHHHHHHHHHHHHhhe
Confidence 34567777777766666666666654
No 458
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=37.03 E-value=2.7e+02 Score=31.71 Aligned_cols=86 Identities=13% Similarity=0.173 Sum_probs=50.5
Q ss_pred eeEEeEeeeCceeEEEEeecCCCChhhH----------hhhcccCCCCC--CCHHHHHHHHHHHHH--HHHHhhhccCCC
Q 002346 642 VALLGYCINGSERLLVYEYMPRGTLAQH----------LFEWHDHGYTP--LTWKQRVTIALDVAR--GVEYLHSLAQQS 707 (933)
Q Consensus 642 v~l~~~~~~~~~~~lv~e~~~~gsL~~~----------l~~~~~~~~~~--l~~~~~~~i~~~i~~--~l~~LH~~~~~~ 707 (933)
++.|.+...+....+ .|++++.++.+. +.........+ ..+..+..++..+|- .+.|+=.
T Consensus 402 i~~Y~Vipls~~~Gl-IE~V~~~tl~~il~~~~~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YILG----- 475 (614)
T 3ls8_A 402 LTPYKVLATSTKHGF-MQFIQSVPVAEVLDTEGSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYILG----- 475 (614)
T ss_dssp CCCCCEEESSSSEEE-EECCCCEEHHHHHHHTSSHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred eeccEEEEecCCCce-EEEeCCccHHHHHHccChHHHHHHHhCCCccccccccHHHHHHHHHHHHHHhHhheeee-----
Confidence 344555444444443 477766444444 33322111111 235566666666543 3555543
Q ss_pred eEecCCCCCcEEecCCCcEEEecccccc
Q 002346 708 FIHRDLKPSNILIGDDMRAKVADFGLVK 735 (933)
Q Consensus 708 ivH~Dik~~Nill~~~~~~kl~DfGla~ 735 (933)
| +|=.++|||++.+|++.=+|||...
T Consensus 476 i--gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 476 V--GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp C--CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred c--cCCCCcceeEcCCCCEeeeehHHhh
Confidence 2 5778899999999999999999875
No 459
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=36.95 E-value=61 Score=23.60 Aligned_cols=24 Identities=8% Similarity=0.247 Sum_probs=9.7
Q ss_pred eeehhhhHHHHHHHHHHHHHHHHH
Q 002346 485 GTIVAIVVVVVIFIAVVFFVVYKF 508 (933)
Q Consensus 485 ~~i~~~v~~~~~~i~~~~~~~~~~ 508 (933)
.+++..+++..++++++.++.|++
T Consensus 13 wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333333334444444443
No 460
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=35.93 E-value=1.1e+02 Score=31.90 Aligned_cols=138 Identities=12% Similarity=0.069 Sum_probs=70.6
Q ss_pred cCCccccCCCeEEEEEEeCCCcEEEEEEeccccCCchhHHHHHHHHHHHHhcCCCcceeEEeE-------------ee--
Q 002346 585 EANILGRGGFGVVYGGELPDGTKIAVKRMESNTMGNKGLSEFQAEIAVLTKVRHRHLVALLGY-------------CI-- 649 (933)
Q Consensus 585 ~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~-------------~~-- 649 (933)
.++..-.|..| ||.... ++..|+||-.. ....+.|-.++...=.+.-|+..-+.-. +.
T Consensus 73 ~I~~s~~Gstg-vff~~t-d~~~~VVK~s~-----~l~~E~l~s~LA~~LGlpiP~~Riv~~~~~E~~e~~~~L~~~~~~ 145 (342)
T 1cja_A 73 GIERSEKGTEG-LFFVET-ESGVFIVKRST-----NIESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAIDKS 145 (342)
T ss_dssp EEEECCSTTSC-EEEEEE-SSCEEEEECCT-----THHHHHHHHHHHHHHTCCCCCEEEEESSSHHHHHHHHHHHHHCSS
T ss_pred EEEeccCCCCC-eEEEEe-CCCEEEEeCcH-----HHHHHHHHHHHHHHhCCCCCCeeEEeeCcHHHHHHHHHHHHhhhh
Confidence 34455566544 554444 58889999431 2233445555555555566653222211 00
Q ss_pred -------eCceeEEEEeecCCCChhhHhhhcccCCCCCCCHHHHHHHHHHHH--HHHHHhhh-ccCCCeEe-cCCCCCcE
Q 002346 650 -------NGSERLLVYEYMPRGTLAQHLFEWHDHGYTPLTWKQRVTIALDVA--RGVEYLHS-LAQQSFIH-RDLKPSNI 718 (933)
Q Consensus 650 -------~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~~i~--~~l~~LH~-~~~~~ivH-~Dik~~Ni 718 (933)
.....+++|||.+|..|.+.-+... ...+..+. +.++. -++.++.. ..+.+.+. .--.+.||
T Consensus 146 ~~~l~~l~~~~~~l~meyv~G~~L~e~~~~~~---~~~f~~~~----~k~LG~Ii~FDi~InN~DR~Pl~W~n~GN~~NI 218 (342)
T 1cja_A 146 FRVITTLANQANILLMELVRGITLNKLTTTSA---PEVLTKST----MQQLGSLMALDVIVNNSDRLPIAWTNEGNLDNI 218 (342)
T ss_dssp SCHHHHHTTCSEEEEEECCCEEESTTCCSSSH---HHHSCHHH----HHHHHHHHHHHHHHTCCSSSCSSSCSCCCGGGE
T ss_pred hHHHHHhhcccceehhhhcCCCccccchhhhh---hhhcCHHH----HHhhchhheehhhhcCCccCcccccCCCChhhe
Confidence 1124569999998766654321100 01122222 23322 23444443 22223222 22578999
Q ss_pred EecCCCc-EEEeccccccc
Q 002346 719 LIGDDMR-AKVADFGLVKN 736 (933)
Q Consensus 719 ll~~~~~-~kl~DfGla~~ 736 (933)
|+++++. +.++|-+.+..
T Consensus 219 L~~~~n~~~~~IDhn~af~ 237 (342)
T 1cja_A 219 MLSERGATVVPIDSKIIPL 237 (342)
T ss_dssp EEESBTTCEEECSCCCCCC
T ss_pred EEeCCCCeEEEEcCCcccc
Confidence 9987554 88999998754
No 461
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=34.37 E-value=32 Score=27.40 Aligned_cols=24 Identities=13% Similarity=0.398 Sum_probs=11.6
Q ss_pred ceeehhhhHHHHHHHHHHHHHHHH
Q 002346 484 VGTIVAIVVVVVIFIAVVFFVVYK 507 (933)
Q Consensus 484 ~~~i~~~v~~~~~~i~~~~~~~~~ 507 (933)
+..|++.+++.+++++++++++++
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555554
No 462
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=33.68 E-value=12 Score=24.54 Aligned_cols=6 Identities=50% Similarity=0.717 Sum_probs=2.3
Q ss_pred HHHhhh
Q 002346 507 KFIARR 512 (933)
Q Consensus 507 ~~~~rr 512 (933)
.+.+||
T Consensus 29 ~~iRRr 34 (35)
T 1iij_A 29 ILIKRR 34 (35)
T ss_dssp HHHHHC
T ss_pred eEEeec
Confidence 333443
No 463
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=30.29 E-value=53 Score=23.89 Aligned_cols=21 Identities=5% Similarity=0.339 Sum_probs=8.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 002346 488 VAIVVVVVIFIAVVFFVVYKF 508 (933)
Q Consensus 488 ~~~v~~~~~~i~~~~~~~~~~ 508 (933)
+..+++..++++++.++.|++
T Consensus 13 i~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 13 LLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 333333333334444444544
No 464
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=28.03 E-value=28 Score=26.22 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=13.0
Q ss_pred ehhhhHHHHHHHHHHHHHHHHHH
Q 002346 487 IVAIVVVVVIFIAVVFFVVYKFI 509 (933)
Q Consensus 487 i~~~v~~~~~~i~~~~~~~~~~~ 509 (933)
+++.++++++++++.+++...++
T Consensus 13 vlGg~~~lll~~glcI~ccvkcr 35 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSVRSR 35 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHhHHHHHHHHHHHHHHHhhHHH
Confidence 44455555666666666555443
No 465
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=27.49 E-value=48 Score=22.89 Aligned_cols=27 Identities=11% Similarity=0.403 Sum_probs=14.3
Q ss_pred ceeehhhhHHHHHHHHHHHHHHHHHHh
Q 002346 484 VGTIVAIVVVVVIFIAVVFFVVYKFIA 510 (933)
Q Consensus 484 ~~~i~~~v~~~~~~i~~~~~~~~~~~~ 510 (933)
..+++..+++.+++++++++++|++.-
T Consensus 9 ~~~Iv~gvi~~ivliGl~lLliwk~~~ 35 (43)
T 2k9j_B 9 ILVVLLSVMGAILLIGLAALLIWKLLI 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555556666666665543
No 466
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=26.68 E-value=1e+02 Score=23.59 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 002346 490 IVVVVVIFIAVVFFVVYKFIAR 511 (933)
Q Consensus 490 ~v~~~~~~i~~~~~~~~~~~~r 511 (933)
.+.++++|++.+++++...+++
T Consensus 21 LifA~vLfi~GI~iilS~KckC 42 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRRCRC 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccc
Confidence 3334444444444444433333
No 467
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=25.07 E-value=46 Score=23.10 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=5.1
Q ss_pred HHHHHHHHHhhhc
Q 002346 501 VFFVVYKFIARRK 513 (933)
Q Consensus 501 ~~~~~~~~~~rr~ 513 (933)
++++++...++++
T Consensus 29 ~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 29 TFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHTTCSSC
T ss_pred HHHHHhhhhhhhh
Confidence 3333444444333
No 468
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=24.67 E-value=60 Score=22.55 Aligned_cols=15 Identities=0% Similarity=-0.193 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhhcc
Q 002346 500 VVFFVVYKFIARRKH 514 (933)
Q Consensus 500 ~~~~~~~~~~~rr~~ 514 (933)
+++++++...+.+++
T Consensus 29 ~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 29 LGIGLFMRRRHIVRK 43 (44)
T ss_dssp HHHHHHHHTTTCCSC
T ss_pred HHHHHHhhhhHhhcc
Confidence 444455555544443
No 469
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=24.65 E-value=66 Score=22.10 Aligned_cols=9 Identities=11% Similarity=0.615 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 002346 499 AVVFFVVYK 507 (933)
Q Consensus 499 ~~~~~~~~~ 507 (933)
+++.++.|+
T Consensus 25 ~li~~~LwK 33 (42)
T 2k1a_A 25 TILVLAMWK 33 (42)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333334443
No 470
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=24.34 E-value=82 Score=23.87 Aligned_cols=18 Identities=11% Similarity=0.150 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 002346 490 IVVVVVIFIAVVFFVVYK 507 (933)
Q Consensus 490 ~v~~~~~~i~~~~~~~~~ 507 (933)
.+.++++|++.+++++..
T Consensus 22 LifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHcC
Confidence 333344444444444443
No 471
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=21.25 E-value=28 Score=19.37 Aligned_cols=10 Identities=40% Similarity=1.345 Sum_probs=7.5
Q ss_pred CCCccccceE
Q 002346 52 TGYCEWTGIN 61 (933)
Q Consensus 52 ~~~C~w~gv~ 61 (933)
...|+|.|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 3569999865
Done!