Query 002347
Match_columns 933
No_of_seqs 43 out of 45
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 22:37:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ugk_A Synaptotagmin IV, KIAA1 91.1 1.8 6.1E-05 38.0 10.4 104 20-141 25-132 (138)
2 3f04_A Synaptotagmin-1; C2A, c 87.5 2.1 7.1E-05 37.7 8.2 91 20-128 37-129 (143)
3 2enp_A B/K protein; C2 type 1, 84.6 2.1 7.2E-05 37.9 6.8 72 39-128 56-128 (147)
4 3kwu_A MUNC13-1; calcium bindi 82.4 2.6 8.9E-05 37.2 6.4 112 20-159 20-144 (148)
5 3pyc_A E3 ubiquitin-protein li 82.4 15 0.0005 31.9 11.1 117 20-159 8-130 (132)
6 2cm5_A Rabphilin-3A; protein t 80.6 6.3 0.00021 35.7 8.5 91 20-128 40-134 (166)
7 2f6h_X Myosin-2, type V myosin 80.4 0.69 2.4E-05 49.9 2.4 218 603-893 44-273 (419)
8 3n5a_A Synaptotagmin-7; calciu 80.3 6.2 0.00021 34.0 7.9 91 20-128 19-113 (138)
9 1wfj_A Putative elicitor-respo 79.8 2 6.7E-05 37.4 4.6 43 71-127 56-99 (136)
10 1wfm_A Synaptotagmin XIII; C2 78.8 1.3 4.6E-05 39.2 3.4 88 20-127 29-118 (138)
11 1rsy_A Synaptotagmin I; calciu 78.1 8 0.00027 34.6 8.2 90 20-127 45-136 (152)
12 3b7y_A E3 ubiquitin-protein li 77.4 4.3 0.00015 36.1 6.2 91 19-130 22-117 (153)
13 2r83_A Synaptotagmin-1; C2A-C2 76.3 18 0.00061 35.1 10.7 90 20-127 22-113 (284)
14 2z0u_A WW domain-containing pr 75.7 1 3.6E-05 41.5 1.8 46 71-127 94-140 (155)
15 2b3r_A Phosphatidylinositol-4- 74.6 6.6 0.00022 34.7 6.6 70 40-127 43-116 (134)
16 3fdw_A Synaptotagmin-like prot 74.5 8.7 0.0003 34.1 7.4 89 21-127 27-120 (148)
17 2d8k_A Synaptotagmin VII; exoc 73.6 7.6 0.00026 34.1 6.7 92 20-128 29-122 (141)
18 3m7f_B E3 ubiquitin-protein li 73.6 6 0.00021 36.3 6.3 74 71-159 59-138 (176)
19 1w15_A Synaptotagmin IV; metal 73.3 8.7 0.0003 34.2 7.1 89 20-126 33-125 (153)
20 1v27_A Regulating synaptic mem 73.3 24 0.00081 30.5 9.7 90 21-127 25-120 (141)
21 1rlw_A Phospholipase A2, CALB 72.8 10 0.00034 32.4 7.1 88 20-127 6-97 (126)
22 2ep6_A MCTP2 protein; beta san 71.7 5.9 0.0002 34.4 5.5 71 71-159 58-129 (133)
23 1tjx_A Similar to synaptotagmi 70.8 2.4 8.2E-05 38.1 2.9 91 20-128 28-122 (159)
24 2dmh_A Myoferlin; beta-sandwic 70.4 17 0.00059 31.6 8.2 88 20-127 10-98 (140)
25 2dmg_A KIAA1228 protein; beta- 70.3 16 0.00055 31.9 8.0 91 21-129 28-123 (142)
26 2chd_A Rabphilin-3A, exophilin 67.1 16 0.00054 32.0 7.2 91 20-128 32-127 (142)
27 1rh8_A Piccolo protein; beta-s 67.0 2.2 7.6E-05 37.3 1.8 91 20-128 21-125 (142)
28 1dqv_A Synaptotagmin III; beta 64.9 60 0.0021 32.1 11.8 89 20-126 23-114 (296)
29 3fbk_A RGS3, RGP3, regulator o 63.5 27 0.00091 31.3 8.2 88 21-127 31-122 (153)
30 2q3x_A Regulating synaptic mem 62.2 3.6 0.00012 37.9 2.3 88 20-128 33-126 (171)
31 1gmi_A Protein kinase C, epsil 62.0 6 0.00021 34.7 3.6 65 39-127 40-105 (136)
32 2bwq_A Regulating synaptic mem 60.8 6.2 0.00021 33.8 3.4 92 20-128 21-118 (129)
33 1a25_A CALB, protein kinase C 60.5 40 0.0014 29.8 8.7 89 20-127 34-126 (149)
34 2fk9_A Protein kinase C, ETA t 59.2 5.8 0.0002 37.4 3.2 90 38-159 61-154 (157)
35 2r83_A Synaptotagmin-1; C2A-C2 54.3 6.6 0.00023 38.1 2.8 47 71-128 200-247 (284)
36 1dqv_A Synaptotagmin III; beta 53.4 3.7 0.00013 40.8 0.8 48 71-129 202-250 (296)
37 2lme_A Adhesin YADA; trimeric 51.6 16 0.00054 33.0 4.6 33 563-595 13-45 (105)
38 3rdl_A Protein kinase C alpha 51.5 6.8 0.00023 33.8 2.2 60 49-127 51-111 (137)
39 2cjt_A UNC-13 homolog A, MUNC1 49.0 13 0.00045 33.2 3.6 44 70-127 45-88 (131)
40 2nq3_A Itchy homolog E3 ubiqui 45.4 31 0.0011 32.4 5.7 84 19-127 38-123 (173)
41 2cjs_A UNC-13 homolog A, MUNC1 44.0 14 0.00048 34.7 3.1 43 71-127 55-97 (167)
42 3l9b_A Otoferlin; C2-domain, b 40.0 20 0.00068 34.6 3.5 122 15-162 19-142 (144)
43 1dip_A Delta-sleep-inducing pe 29.9 47 0.0016 29.7 3.9 37 553-589 9-48 (78)
44 2er8_A Regulatory protein Leu3 28.7 26 0.0009 28.3 2.0 22 564-585 47-68 (72)
45 2jx8_A Hpcif1, phosphorylated 28.1 14 0.00048 29.9 0.3 24 841-864 29-52 (52)
46 2yy0_A C-MYC-binding protein; 26.4 74 0.0025 26.1 4.3 30 558-587 18-47 (53)
47 2z5i_A TM, general control pro 25.6 50 0.0017 27.0 3.1 25 559-583 5-29 (52)
48 1zme_C Proline utilization tra 24.5 60 0.002 25.8 3.4 20 566-585 44-63 (70)
49 1djx_A PLC-D1, phosphoinositid 22.1 3.1E+02 0.01 31.1 9.6 120 15-159 495-621 (624)
50 3ra3_B P2F; coiled coil domain 22.1 80 0.0027 23.3 3.2 23 564-589 5-27 (28)
51 2lw1_A ABC transporter ATP-bin 22.1 40 0.0014 29.3 2.0 17 566-582 22-38 (89)
No 1
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=91.05 E-value=1.8 Score=37.99 Aligned_cols=104 Identities=13% Similarity=0.222 Sum_probs=66.1
Q ss_pred EEEeeeecCCCCCccc--cccceEEEEeecCCCCCCCcccccCCCcccccCceEEeecceeee-EEEEeecccCCCCccc
Q 002347 20 QIHIQDIKPWPPSQSL--RSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLR-VTLLRDMNVKNKDADT 96 (933)
Q Consensus 20 ~IhIqeIKPWPPSqSL--rSlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~-vtL~ke~s~kg~~~~~ 96 (933)
.|+|.+-+-.|+.... .+=.-|.+...++.+....|.++--+ -.=.|||.|.++ +.. +.
T Consensus 25 ~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~~v~~-----------~~ 86 (138)
T 1ugk_A 25 VVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKT-------LDPAFDETFTFYGIPY-----------TQ 86 (138)
T ss_dssp EEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSC-------SSCEEEEEEEEECCCS-----------TT
T ss_pred EEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCC-------CCCcEeeEEEEcCcCH-----------HH
Confidence 5677777777765432 23345677776655567777766322 234699999875 221 23
Q ss_pred ccccceEEEecccccc-cccccceeeeccccccccccccccccccc
Q 002347 97 FLKNCLEFNLYEPRRD-KTQLLATATIDLADYGIVKETLSVNAPMN 141 (933)
Q Consensus 97 FqKN~LEfnLyE~Rrd-K~QlLGtAvIdLADyGii~e~~sis~p~n 141 (933)
.+...|.|.+|+-.+- +-.+||.+.|+|+++-.-.+....-.++-
T Consensus 87 ~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~ 132 (138)
T 1ugk_A 87 IQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp GGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred hccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhh
Confidence 4567899999986442 22899999999999755444444444443
No 2
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=87.52 E-value=2.1 Score=37.66 Aligned_cols=91 Identities=16% Similarity=0.152 Sum_probs=58.4
Q ss_pred EEEeeeecCCCCCccc-cccceEEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 002347 20 QIHIQDIKPWPPSQSL-RSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (933)
Q Consensus 20 ~IhIqeIKPWPPSqSL-rSlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (933)
.|+|.+-+--|+.... .+=.-|.+..-+++.....|.++--+ -.=.|||.|.+++.. +...
T Consensus 37 ~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~-----------~~l~ 98 (143)
T 3f04_A 37 LVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT-------LNPVFNEQFTFKVPY-----------SELG 98 (143)
T ss_dssp EEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSC-------SSCEEEEEEEECCCH-----------HHHT
T ss_pred EEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCC-------CCCcCcCeEEEeecH-----------hhcC
Confidence 4667666666654432 12234666665555667777766322 224699999887532 2234
Q ss_pred ccceEEEecccccc-cccccceeeecccccc
Q 002347 99 KNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (933)
Q Consensus 99 KN~LEfnLyE~Rrd-K~QlLGtAvIdLADyG 128 (933)
...|.|.+|+-.+- +-.+||.+.|+|+++-
T Consensus 99 ~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~ 129 (143)
T 3f04_A 99 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD 129 (143)
T ss_dssp TCEEEEEEEECCSSSCCEEEEEEEEEGGGCC
T ss_pred CCEEEEEEEeCCCCCCCceEEEEEEEHHHcc
Confidence 47899999986542 2289999999999873
No 3
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.64 E-value=2.1 Score=37.91 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=49.8
Q ss_pred ceEEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcccccccceEEEecccccc-ccccc
Q 002347 39 RSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLL 117 (933)
Q Consensus 39 rsVllqWENGd~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~Rrd-K~QlL 117 (933)
.-|.+...++++....|.++--++ .=.|||.|.+++.. +..+...|.|.+|+-.+- +-.+|
T Consensus 56 pyv~v~l~~~~~~~~kT~v~~~t~-------nP~wne~f~f~v~~-----------~~l~~~~L~~~V~d~d~~~~~~~i 117 (147)
T 2enp_A 56 PYVKICLLPDQKNSKQTGVKRKTQ-------KPVFEERYTFEIPF-----------LEAQRRTLLLTVVDFDKFSRHCVI 117 (147)
T ss_dssp CEEEEEEETCCSSCEECCCCCSCS-------SCCCCBCCEECCCH-----------HHHHHSEEEEEEECCSTTCCSCCC
T ss_pred cEEEEEEEeCCCcceEeecccCCC-------CCeEeeeEEEEeCh-----------HHhccCEEEEEEEECCCCcCCcEE
Confidence 467777776666667777663222 24799999987531 223456899999987542 22799
Q ss_pred ceeeecccccc
Q 002347 118 ATATIDLADYG 128 (933)
Q Consensus 118 GtAvIdLADyG 128 (933)
|.+.|+|+++.
T Consensus 118 G~~~i~l~~l~ 128 (147)
T 2enp_A 118 GKVSVPLCEVD 128 (147)
T ss_dssp EEEEEETTTSC
T ss_pred EEEEEechhcC
Confidence 99999999873
No 4
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=82.39 E-value=2.6 Score=37.23 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=63.1
Q ss_pred EEEeeeecCCCCCccc-cccceEEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 002347 20 QIHIQDIKPWPPSQSL-RSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (933)
Q Consensus 20 ~IhIqeIKPWPPSqSL-rSlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (933)
.|+|.+-+-.|+.... .+=.-|.+... . ....|.++--+ -.=.|||.|.+++.. .
T Consensus 20 ~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~-~~~kT~~~~~t-------~nP~Wne~f~f~v~~------~-------- 75 (148)
T 3kwu_A 20 SITVVCAQGLQAKDKTGSSDPYVTVQVG--K-TKKRTKTIYGN-------LNPVWEENFHFECHN------S-------- 75 (148)
T ss_dssp EEEEEEEESCCCCSTTSCCCEEEEEEET--T-EEEECCCCCSC-------SSCEEEEEEEEEECS------T--------
T ss_pred EEEEEeeeCCCCCCCCCCcCeEEEEEEC--C-EEEECCccCCC-------CCCCcccEEEEEecC------C--------
Confidence 3555555555543321 12234555552 2 33455555322 223699999887741 0
Q ss_pred ccceEEEecccccc------------cccccceeeeccccccccccccccccccccccccccCCCceEEEEEe
Q 002347 99 KNCLEFNLYEPRRD------------KTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQ 159 (933)
Q Consensus 99 KN~LEfnLyE~Rrd------------K~QlLGtAvIdLADyGii~e~~sis~p~n~Krs~Rn~~qP~Lyv~Iq 159 (933)
...|.|.+|+-... +-.+||.+.|+|.+++ .....-.|+. ++......+-.|.|+|.
T Consensus 76 ~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~---~~~~~w~~L~-~~~~~~~~~G~i~l~l~ 144 (148)
T 3kwu_A 76 SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS---GEMDVWYNLD-KRTDKSAVSGAIRLHIS 144 (148)
T ss_dssp TCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC---SEEEEEEECB-CSSTTCCCCCEEEEEEE
T ss_pred CCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc---CCCCEEEEcc-cCCCCCCCceEEEEEEE
Confidence 13699999987653 3489999999999983 2333445555 33333334556666654
No 5
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=82.38 E-value=15 Score=31.89 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=63.8
Q ss_pred EEEeeeecCCCCCcccc-ccceEEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 002347 20 QIHIQDIKPWPPSQSLR-SLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (933)
Q Consensus 20 ~IhIqeIKPWPPSqSLr-SlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (933)
.|+|.+-+-.|+..... +=.-|.+.. .++.....|.++--++ -=.|||.|.+++.- . +
T Consensus 8 ~V~v~~a~~L~~~d~~g~sDpyv~v~~-~~~~~~~kT~v~~~t~-------nP~wne~f~f~v~~-------~------~ 66 (132)
T 3pyc_A 8 RLTVLCAKNLAKKDFFRLPDPFAKIVV-DGSGQCHSTDTVKNTL-------DPKWNQHYDLYVGK-------T------D 66 (132)
T ss_dssp EEEEEEEESCCCCSTTCCCCEEEEEEE-TTTCCEEECCCCSSCS-------SCEEEEEEEEEEET-------T------C
T ss_pred EEEEEEeECCCCCCCCCCcCeEEEEEE-CCCCceEECCccCCCC-------CCCccCEEEEEeCC-------C------C
Confidence 34454444444332221 112344443 4434556666652222 24699999887621 1 1
Q ss_pred ccceEEEeccccccc----ccccceeeecccccccccccccccccccccc-ccccCCCceEEEEEe
Q 002347 99 KNCLEFNLYEPRRDK----TQLLATATIDLADYGIVKETLSVNAPMNSKR-SFRNTAQPVLFIKIQ 159 (933)
Q Consensus 99 KN~LEfnLyE~RrdK----~QlLGtAvIdLADyGii~e~~sis~p~n~Kr-s~Rn~~qP~Lyv~Iq 159 (933)
.|.|.+|+-..-. -.+||.+.|+|++..-..+......++.-+. .-....+-.|.|.|+
T Consensus 67 --~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~ 130 (132)
T 3pyc_A 67 --SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQ 130 (132)
T ss_dssp --CEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEE
T ss_pred --EEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEE
Confidence 3999999876532 3799999999988755555444445554321 112233556666654
No 6
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=80.64 E-value=6.3 Score=35.75 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=56.4
Q ss_pred EEEeeeecCCCCCcccc-ccceEEEEeecCC--CCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccc
Q 002347 20 QIHIQDIKPWPPSQSLR-SLRSVMIQWQNGD--RNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADT 96 (933)
Q Consensus 20 ~IhIqeIKPWPPSqSLr-SlrsVllqWENGd--~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~ 96 (933)
.|+|.+-+--|+..... +=.-|.+....+. .....|.++-- .-.=.|||.|.+++.. +.
T Consensus 40 ~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-------t~nP~wne~f~f~v~~-----------~~ 101 (166)
T 2cm5_A 40 IVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK-------TLNPEFNEEFFYDIKH-----------SD 101 (166)
T ss_dssp EEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCS-------CSSCEEEEEEEEECCG-----------GG
T ss_pred EEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccC-------CCCCcccceEEEEcch-----------Hh
Confidence 46666666666543221 2234555554422 34556666521 2236799999988632 12
Q ss_pred ccccceEEEeccccccc-ccccceeeecccccc
Q 002347 97 FLKNCLEFNLYEPRRDK-TQLLATATIDLADYG 128 (933)
Q Consensus 97 FqKN~LEfnLyE~RrdK-~QlLGtAvIdLADyG 128 (933)
.+...|.|.+|+-.+-. -.+||.+.|+|.+.|
T Consensus 102 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 102 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp GGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH
T ss_pred cCCCEEEEEEEECCCCCCCcEEEeEEEecccCC
Confidence 44678999999875532 389999999999865
No 7
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=80.39 E-value=0.69 Score=49.95 Aligned_cols=218 Identities=15% Similarity=0.158 Sum_probs=116.8
Q ss_pred ccccCchhhhhhHHHHHHhcccchhhhhHHHhhhccceEEEeecc-cCC-CCcceeehhhHHHHHHHH--HHHhcCCCCC
Q 002347 603 MSKVHAPARRLSRLYLHACKEDFQSRRASAARSAVSGLVLVAKAC-GND-VPRLTFWLSNSIVLRAII--SQATGRLEQP 678 (933)
Q Consensus 603 ~hKvHtPARRLSRlYiHAcK~~s~~krAsaArn~vSGLVLVaKaC-GND-VpRLTFWlSN~iVLReII--sqa~~~~~~~ 678 (933)
.+-+-.||.=|-..-.|+.|.....++-+.--.++.++=-|.+.. |+| +..|.|||||+.-|--.+ .|......
T Consensus 44 ~~~~l~PA~il~~cl~~~~~~~~~~~~~~ll~~ii~~I~~~v~~~~~~d~i~~lafWLSN~~~LL~~L~~k~~~~~~~-- 121 (419)
T 2f6h_X 44 KRDVVYPARILIIVLSEMWRFGLTKQSESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFALNSILTE-- 121 (419)
T ss_dssp HHHHSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCcchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHhhhhhhcc--
Confidence 455668888877666667776444444344333444444444455 467 588999999999999988 44431000
Q ss_pred CccccccccCcccCCCCCCCCccccccccccccccccccCCCCCCCCC----ccchHHHHhhhhhhhhhhhhhhhhhc--
Q 002347 679 FAAGQSLERNSSQRGNNNITSPLKWKESASRKKDNRNVMRGSFDDWED----PHTLPSALEKVEAWIFSRIVESIWWQ-- 752 (933)
Q Consensus 679 ~~~~~~~~~ng~~~~~~~~~~~~~wk~~~~~k~~~~~~~~~~~~dW~d----~~Tf~~ALeKvEsWIFSRIVESVWWQ-- 752 (933)
. + . ..++ ...+|.+ ...|...|+-+.-.||+.++..+-=.
T Consensus 122 ----------~-~--~---~~~~------------------~~~~~~~y~~l~~~~~~~L~~l~~~iy~~li~~l~k~L~ 167 (419)
T 2f6h_X 122 ----------E-T--F---KNGM------------------TDEEYKEYVSLVTELKDDFEALSYNIYNIWLKKLQKQLQ 167 (419)
T ss_dssp ----------C-C---------C------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------C-c--c---cccc------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 0000 0012221 33456678888889999887554311
Q ss_pred -ccCccccchhccccccccCcccccccC-CcCCCcccccccchHHHHHHHHHHHHhhccccccCCccccchHHHHHHHHH
Q 002347 753 -TLTPHMQSAAERVMDRDIGSCSRKNLE-RTSSSGDQEQINFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIME 830 (933)
Q Consensus 753 -~lTPhMQs~~~~~~~~~~~s~s~k~~g-r~~~lgDq~Qg~fSI~LWK~AF~dA~eRLCPvRagGHECGCLPvLarlVME 830 (933)
.+.|-||.+..- .+-...+..| +...... +...+++-=-+-|...+..++ .|+==|.|.+.++.
T Consensus 168 p~l~paIl~~~~~-----~~~~~~~~~~~~~k~~~~--~~~~~~~~Il~~L~~~~~~L~-------~~~V~~~l~~Q~fs 233 (419)
T 2f6h_X 168 KKAINAVVISESL-----PGFSAGETSGFLNKIFAN--TEEYTMDDILTFFNSIYWCMK-------SFHIENEVFHAVVT 233 (419)
T ss_dssp HHHHHHHTTSCSS-----TTTTC-----------------CCCHHHHHHHHHHHHHHHH-------HTTCCHHHHHHHHH
T ss_pred HHHHHHHhCcccc-----cccccccccccccccccC--CCccCHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHH
Confidence 233444432210 0000011011 0001111 112333322233333333332 46667999999999
Q ss_pred HHHhhhHHHHHHHHhhccCCCCCCCCCCCCCCCCcceecCCCCCCcCcccccccccccccccc
Q 002347 831 QCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLKNAVSDTNFRF 893 (933)
Q Consensus 831 QCVaRLDVAMFNAILRESa~eiPTDPiSDPI~DskVLPIPaG~~SFGaGAQLKNaIgnWSr~l 893 (933)
|...=+++-+||.+|-.. +-.+|-.|.|+|--|..=-.|+
T Consensus 234 Qlf~~In~~lFN~LL~r~-----------------------~~cs~s~G~qIr~nls~Le~W~ 273 (419)
T 2f6h_X 234 TLLNYVDAICFNELIMKR-----------------------NFLSWKRGLQLNYNVTRLEEWC 273 (419)
T ss_dssp HHHHHHHHHHHHHHHTCS-----------------------SCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC-----------------------cccchhhHHHHHhhHHHHHHHH
Confidence 999999999999998532 2478888999986555433333
No 8
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=80.29 E-value=6.2 Score=33.98 Aligned_cols=91 Identities=12% Similarity=0.114 Sum_probs=54.6
Q ss_pred EEEeeeecCCCCCccc-cccceEEEEeecCCC--CCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccc
Q 002347 20 QIHIQDIKPWPPSQSL-RSLRSVMIQWQNGDR--NSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADT 96 (933)
Q Consensus 20 ~IhIqeIKPWPPSqSL-rSlrsVllqWENGd~--~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~ 96 (933)
.|+|.+-+--|+.... .+=.-|.+...++++ ....|.++--+ -.=.|||.|.+++. .+.
T Consensus 19 ~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t-------~nP~wne~f~f~v~-----------~~~ 80 (138)
T 3n5a_A 19 IVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRN-------LNPIFNESFAFDIP-----------TEK 80 (138)
T ss_dssp EEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSC-------SSCEEEEEEEEECC-----------GGG
T ss_pred EEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCC-------CCCcCcceEEEECC-----------hhh
Confidence 5666666655554322 122345555544322 34556555322 22479999988743 123
Q ss_pred ccccceEEEecccccc-cccccceeeecccccc
Q 002347 97 FLKNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (933)
Q Consensus 97 FqKN~LEfnLyE~Rrd-K~QlLGtAvIdLADyG 128 (933)
.+...|.|.+|+-.+- +-.+||.+.|+|.+.+
T Consensus 81 l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 81 LRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp GGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH
T ss_pred cCceEEEEEEEECCCCCCCcEEEEEEEccccCC
Confidence 4567899999986543 2389999999998743
No 9
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=79.81 E-value=2 Score=37.40 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=33.8
Q ss_pred EEeecceeeeEEEEeecccCCCCcccccccceEEEecccccc-cccccceeeeccccc
Q 002347 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADY 127 (933)
Q Consensus 71 IEFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~Rrd-K~QlLGtAvIdLADy 127 (933)
=.|||.|.+++.- ....|.|.+|+-.+- +-.+||.+.|+|.++
T Consensus 56 P~Wne~f~f~v~~--------------~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l 99 (136)
T 1wfj_A 56 PEWNETFIFTVSE--------------GTTELKAKIFDKDVGTEDDAVGEATIPLEPV 99 (136)
T ss_dssp CEEEEEEEEEEES--------------SCCEEEEEECCSSSCTTTCCSEEEEEESHHH
T ss_pred CccCcEEEEEECC--------------CCCEEEEEEEECCCCCCCceEEEEEEEHHHh
Confidence 5799999998761 234799999987542 338999999999986
No 10
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=78.79 E-value=1.3 Score=39.21 Aligned_cols=88 Identities=10% Similarity=0.005 Sum_probs=51.5
Q ss_pred EEEeeeecCCCCCccccccceEEEEeecC-CCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 002347 20 QIHIQDIKPWPPSQSLRSLRSVMIQWQNG-DRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (933)
Q Consensus 20 ~IhIqeIKPWPPSqSLrSlrsVllqWENG-d~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (933)
.|+|.+-++ ....=.+=.-|.+.-.++ ++....|.++--+ =.=.|||.|.+++.. +..+
T Consensus 29 ~V~v~~a~~--~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~t-------lnP~wnE~f~f~v~~-----------~~l~ 88 (138)
T 1wfm_A 29 FVTRLEAVT--SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQ-------LHTTWEEGLVLPLAE-----------EELP 88 (138)
T ss_dssp EEEEEEEEC--CCCSSCCCEEEEEEEEETTEEEEEECCCCCCC-------SSEECSSCEEEECCT-----------TSST
T ss_pred EEEEEEEEc--CCCCCCcceEEEEEEEcCCCcccEecccCcCC-------CCCcCCceEEEEecH-----------HHcC
Confidence 466667663 221112223455544332 2333455554221 125799999998531 1234
Q ss_pred ccceEEEecccccc-cccccceeeeccccc
Q 002347 99 KNCLEFNLYEPRRD-KTQLLATATIDLADY 127 (933)
Q Consensus 99 KN~LEfnLyE~Rrd-K~QlLGtAvIdLADy 127 (933)
...|.|.+|+-.+- +-.+||.+.|+|+++
T Consensus 89 ~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l 118 (138)
T 1wfm_A 89 TATLTLTLRTCDRFSRHSVAGELRLGLDGT 118 (138)
T ss_dssp TCEEEEEEEECCSSCTTSCSEEEEEESSSS
T ss_pred CCEEEEEEEECCCCCCCcEEEEEEEEcccc
Confidence 56799999987442 228999999999997
No 11
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=78.10 E-value=8 Score=34.58 Aligned_cols=90 Identities=17% Similarity=0.150 Sum_probs=56.8
Q ss_pred EEEeeeecCCCCCcccc-ccceEEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 002347 20 QIHIQDIKPWPPSQSLR-SLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (933)
Q Consensus 20 ~IhIqeIKPWPPSqSLr-SlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (933)
.|+|.+-+--|+..... +=.-|.+...++++....|.++--+ -.=.|||.|.+++.. +...
T Consensus 45 ~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~-----------~~l~ 106 (152)
T 1rsy_A 45 LVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT-------LNPVFNEQFTFKVPY-----------SELG 106 (152)
T ss_dssp EEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTC-------SSCEEEEEEEECCCH-----------HHHT
T ss_pred EEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCC-------CCCcCcccEEEeecH-----------HHcC
Confidence 45666666666543221 1234556665555566667666322 235899999986532 1234
Q ss_pred ccceEEEecccccc-cccccceeeeccccc
Q 002347 99 KNCLEFNLYEPRRD-KTQLLATATIDLADY 127 (933)
Q Consensus 99 KN~LEfnLyE~Rrd-K~QlLGtAvIdLADy 127 (933)
...|.|.+|+-.+- +-.+||.+.|+|+++
T Consensus 107 ~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l 136 (152)
T 1rsy_A 107 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 136 (152)
T ss_dssp TCEEEEEEEECCSSSCCEEEEEEEEEGGGC
T ss_pred CCEEEEEEEECCCCCCCcEEEEEEEEchhc
Confidence 56899999987542 238999999999986
No 12
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=77.39 E-value=4.3 Score=36.06 Aligned_cols=91 Identities=19% Similarity=0.160 Sum_probs=51.3
Q ss_pred EEEEeeeecCCCCCccc-cccceEEEEeecCC---CCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCc
Q 002347 19 YQIHIQDIKPWPPSQSL-RSLRSVMIQWQNGD---RNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDA 94 (933)
Q Consensus 19 Y~IhIqeIKPWPPSqSL-rSlrsVllqWENGd---~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~ 94 (933)
..|+|.+-+-.|+.... .+=.-|.+...... .....|.++--+ -.=.|||.|.+++.-
T Consensus 22 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~----------- 83 (153)
T 3b7y_A 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKS-------LNPKWNEEILFRVHP----------- 83 (153)
T ss_dssp EEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSC-------SSCCCCEEEEEEECT-----------
T ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCC-------CCCCCCCEEEEEecC-----------
Confidence 34455555555543322 12234555555322 234556555322 224689999988641
Q ss_pred ccccccceEEEecccccc-cccccceeeecccccccc
Q 002347 95 DTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYGIV 130 (933)
Q Consensus 95 ~~FqKN~LEfnLyE~Rrd-K~QlLGtAvIdLADyGii 130 (933)
....|.|.+|+-.+- +-.+||.+.|+|.++-.-
T Consensus 84 ---~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 117 (153)
T 3b7y_A 84 ---QQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTE 117 (153)
T ss_dssp ---TTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBC
T ss_pred ---CCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccC
Confidence 125799999987553 238999999999986443
No 13
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=76.29 E-value=18 Score=35.06 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=56.8
Q ss_pred EEEeeeecCCCCCccc-cccceEEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 002347 20 QIHIQDIKPWPPSQSL-RSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (933)
Q Consensus 20 ~IhIqeIKPWPPSqSL-rSlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (933)
.|+|.+-+-.|+.... .+=.-|.+...+++.....|.++--+ =.=.|||.|.+++.. +..+
T Consensus 22 ~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~-------~nP~wne~f~f~v~~-----------~~~~ 83 (284)
T 2r83_A 22 LVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT-------LNPVFNEQFTFKVPY-----------SELA 83 (284)
T ss_dssp EEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSC-------SSCEEEEEEEECCCG-----------GGCT
T ss_pred EEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCC-------CCCeeCceEEEEech-----------HHhC
Confidence 3555565555543321 22335677776655556666665322 234699999987531 1245
Q ss_pred ccceEEEecccccc-cccccceeeeccccc
Q 002347 99 KNCLEFNLYEPRRD-KTQLLATATIDLADY 127 (933)
Q Consensus 99 KN~LEfnLyE~Rrd-K~QlLGtAvIdLADy 127 (933)
...|.|.+|+-.+- +-.+||.+.|+|.++
T Consensus 84 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l 113 (284)
T 2r83_A 84 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 113 (284)
T ss_dssp TCEEEEEEEECCSSSCCCEEEEEEEEGGGC
T ss_pred cCEEEEEEEECCCCCCCceeEEEEEcchhc
Confidence 56899999986542 238999999999986
No 14
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=75.67 E-value=1 Score=41.52 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=35.7
Q ss_pred EEeecceeeeEEEEeecccCCCCcccccccceEEEecccccccc-cccceeeeccccc
Q 002347 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKT-QLLATATIDLADY 127 (933)
Q Consensus 71 IEFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~RrdK~-QlLGtAvIdLADy 127 (933)
=.|||.|.+++.. +..+...|+|.+|+-.+... .+||.+.|+|+++
T Consensus 94 P~wnE~F~f~v~~-----------~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l 140 (155)
T 2z0u_A 94 LVFNEVFWVSMSY-----------PALHQKTLRVDVCTTDRSHLEECLGGAQISLAEV 140 (155)
T ss_dssp EEEEEEEEEECCH-----------HHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTS
T ss_pred CccccEEEEEcCH-----------HHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHc
Confidence 5799999988642 23456789999998754332 8999999999986
No 15
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=74.57 E-value=6.6 Score=34.72 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=44.9
Q ss_pred eEEEEeecC--CCCCCCcccccCCCcccccCceEEeecceeee-EEEEeecccCCCCcccccccceEEEeccccccc-cc
Q 002347 40 SVMIQWQNG--DRNSGSTKTVGPSLGSVIGEGKIEFNESFRLR-VTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDK-TQ 115 (933)
Q Consensus 40 sVllqWENG--d~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~-vtL~ke~s~kg~~~~~FqKN~LEfnLyE~RrdK-~Q 115 (933)
-|.+..-.+ ......|.++-=+ -.=.|||.|.++ +.. +..+...|.|.+|+-.+-. -.
T Consensus 43 yv~v~l~~~~~~~~~~kT~v~~~t-------~nP~wnE~f~f~~v~~-----------~~l~~~~L~~~V~d~d~~~~~~ 104 (134)
T 2b3r_A 43 YVKTYLLPDTHKTSKRKTKISRKT-------RNPTFNEMLVYSGYSK-----------ETLRQRELQLSVLSAESLRENF 104 (134)
T ss_dssp EEEEEEESCSSSCCCEECCCCCSC-------SSCEEEEEEEEESCCH-----------HHHTTCEEEEEEEECCSSSCCE
T ss_pred EEEEEEEcCCCCCceecCCcCcCC-------CCCCCccEEEECCcCH-----------HHhCcCEEEEEEEECCCCCCCc
Confidence 455555332 3445566665221 124699999887 532 2234568999999875432 28
Q ss_pred ccceeeeccccc
Q 002347 116 LLATATIDLADY 127 (933)
Q Consensus 116 lLGtAvIdLADy 127 (933)
+||.+.|+|++.
T Consensus 105 ~lG~~~i~l~~l 116 (134)
T 2b3r_A 105 FLGGITLPLKDF 116 (134)
T ss_dssp EEEEEEEEGGGS
T ss_pred EEEEEEEEhhhc
Confidence 999999999987
No 16
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=74.51 E-value=8.7 Score=34.07 Aligned_cols=89 Identities=15% Similarity=0.251 Sum_probs=51.8
Q ss_pred EEeeeecCCCCCcc--ccccceEEEEeecCCC--CCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccc
Q 002347 21 IHIQDIKPWPPSQS--LRSLRSVMIQWQNGDR--NSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADT 96 (933)
Q Consensus 21 IhIqeIKPWPPSqS--LrSlrsVllqWENGd~--~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~ 96 (933)
|+|.+-+--|+... -.+=.-|.+....+.. ....|.++--++ .=.|||.|.+++.. +.
T Consensus 27 V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~-------nP~wne~f~f~v~~-----------~~ 88 (148)
T 3fdw_A 27 VHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTV-------NPLYDETLRYEIPE-----------SL 88 (148)
T ss_dssp EEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCS-------SCEEEEEEEEECCS-----------TT
T ss_pred EEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCC-------CCcEeeEEEEEeCh-----------hH
Confidence 55555554444331 1122345555543332 244555552221 24799999887421 12
Q ss_pred ccccceEEEeccccccc-ccccceeeeccccc
Q 002347 97 FLKNCLEFNLYEPRRDK-TQLLATATIDLADY 127 (933)
Q Consensus 97 FqKN~LEfnLyE~RrdK-~QlLGtAvIdLADy 127 (933)
.+...|.|.+|+-.+-. -.+||.+.|+|+++
T Consensus 89 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l 120 (148)
T 3fdw_A 89 LAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSW 120 (148)
T ss_dssp GGGCEEEEEEEEECGGGCEEEEEEEEEEHHHH
T ss_pred hCceEEEEEEEECCCCcCCcEEEEEEEEcccc
Confidence 45678999999864422 28999999999987
No 17
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.61 E-value=7.6 Score=34.10 Aligned_cols=92 Identities=15% Similarity=0.141 Sum_probs=55.6
Q ss_pred EEEeeeecCCCCCcccc-ccceEEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 002347 20 QIHIQDIKPWPPSQSLR-SLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (933)
Q Consensus 20 ~IhIqeIKPWPPSqSLr-SlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (933)
.|+|.+-+-.|+..... +=.-|.+...+++.....|.++--+ -.=.|||.|.+++. ..+...
T Consensus 29 ~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~~~----------~~~~~~ 91 (141)
T 2d8k_A 29 TVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKN-------LNPHWNETFLFEGF----------PYEKVV 91 (141)
T ss_dssp EEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTC-------SSCCCCEEEEECSC----------CHHHHT
T ss_pred EEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCC-------CCCccccEEEECcc----------CHHHcc
Confidence 45666666555543211 2235666665555555666665222 22468999987631 012234
Q ss_pred ccceEEEecccccc-cccccceeeecccccc
Q 002347 99 KNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (933)
Q Consensus 99 KN~LEfnLyE~Rrd-K~QlLGtAvIdLADyG 128 (933)
...|.|.+|+-.+- +-.+||.+.|+|.++-
T Consensus 92 ~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~ 122 (141)
T 2d8k_A 92 QRILYLQVLDYDRFSRNDPIGEVSIPLNKVD 122 (141)
T ss_dssp TSEEEEEEEECCSSSSCEEEEEEEEETTTSC
T ss_pred cCEEEEEEEECCCCCCCcEEEEEEEEhhhhc
Confidence 56799999987552 2389999999999863
No 18
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=73.57 E-value=6 Score=36.30 Aligned_cols=74 Identities=14% Similarity=0.277 Sum_probs=43.0
Q ss_pred EEeecceeeeEEEEeecccCCCCcccccccceEEEecccccc-cccccceeeeccccccccccccc-----ccccccccc
Q 002347 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYGIVKETLS-----VNAPMNSKR 144 (933)
Q Consensus 71 IEFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~Rrd-K~QlLGtAvIdLADyGii~e~~s-----is~p~n~Kr 144 (933)
=.|||.|.+++. . ....|.|.+|+-.+- +-.+||.+.|+|+++-.-..... .-.||.-+.
T Consensus 59 P~Wne~f~f~v~------~--------~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~ 124 (176)
T 3m7f_B 59 PKWNEEILFRVL------P--------QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS 124 (176)
T ss_dssp CEEEEEEEEEEC------T--------TTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS
T ss_pred CcccceEEEEEc------C--------CCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC
Confidence 469999988764 1 114699999986443 22899999999998754332211 345555332
Q ss_pred ccccCCCceEEEEEe
Q 002347 145 SFRNTAQPVLFIKIQ 159 (933)
Q Consensus 145 s~Rn~~qP~Lyv~Iq 159 (933)
. +....-.|.|+|.
T Consensus 125 ~-~~~~~G~l~l~l~ 138 (176)
T 3m7f_B 125 H-KSRVKGYLRLKMT 138 (176)
T ss_dssp T-TCCCCSEEEEEEE
T ss_pred C-CCccCEEEEEEEE
Confidence 2 2334445555554
No 19
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=73.27 E-value=8.7 Score=34.16 Aligned_cols=89 Identities=13% Similarity=0.217 Sum_probs=53.1
Q ss_pred EEEeeeecCCCCCccc-cccceEEEEeecCCCC--CCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccc
Q 002347 20 QIHIQDIKPWPPSQSL-RSLRSVMIQWQNGDRN--SGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADT 96 (933)
Q Consensus 20 ~IhIqeIKPWPPSqSL-rSlrsVllqWENGd~~--SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~ 96 (933)
.|+|.+-+--|+.... .+=.-|.+..-.+.+. ...|.++-- .-.=.|||.|.+++.. +.
T Consensus 33 ~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-------t~nP~wne~f~f~v~~-----------~~ 94 (153)
T 1w15_A 33 TVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-------TPNAVFNELFVFDIPC-----------ES 94 (153)
T ss_dssp EEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCS-------CSSEEEEEEEEEECCS-----------SS
T ss_pred EEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccC-------CCCCeecceEEEECCH-----------HH
Confidence 5666666666654321 1223455555443322 445655521 2346899999987532 12
Q ss_pred ccccceEEEecccccc-cccccceeeecccc
Q 002347 97 FLKNCLEFNLYEPRRD-KTQLLATATIDLAD 126 (933)
Q Consensus 97 FqKN~LEfnLyE~Rrd-K~QlLGtAvIdLAD 126 (933)
.+...|.|.+|+-.+- +-.+||.+.|+|.+
T Consensus 95 l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 95 LEEISVEFLVLDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp STTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred hCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence 4557899999987543 22899999999988
No 20
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=73.26 E-value=24 Score=30.52 Aligned_cols=90 Identities=26% Similarity=0.361 Sum_probs=52.7
Q ss_pred EEeeeecCCCCCcccc-ccceEEEEeec--CCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcccc
Q 002347 21 IHIQDIKPWPPSQSLR-SLRSVMIQWQN--GDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTF 97 (933)
Q Consensus 21 IhIqeIKPWPPSqSLr-SlrsVllqWEN--Gd~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~F 97 (933)
|+|.+-+--|+..... +=.-|.+..-. +......|.++--++ .=.|||.|.+++.- .+..
T Consensus 25 v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~-------nP~wne~f~f~~~~----------~~~~ 87 (141)
T 1v27_A 25 VTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTL-------EPKWNQTFIYSPVH----------RREF 87 (141)
T ss_dssp EEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCS-------SCCCCCCCEECSCC----------TTGG
T ss_pred EEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCC-------CCccccEEEEccCC----------HHHh
Confidence 4555555445433211 12234444422 234556666663322 24699999887311 1234
Q ss_pred cccceEEEeccccccc---ccccceeeeccccc
Q 002347 98 LKNCLEFNLYEPRRDK---TQLLATATIDLADY 127 (933)
Q Consensus 98 qKN~LEfnLyE~RrdK---~QlLGtAvIdLADy 127 (933)
....|.|.+|+-.+-. -.+||.+.|+|++.
T Consensus 88 ~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l 120 (141)
T 1v27_A 88 RERMLEITLWDQARVREEESEFLGEILIELETA 120 (141)
T ss_dssp GTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGC
T ss_pred cCCEEEEEEEECCCCcCCCCceEEEEEEEcccc
Confidence 5578999999876643 48999999999985
No 21
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=72.82 E-value=10 Score=32.40 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=53.9
Q ss_pred EEEeeeecCCCCC---ccc-cccceEEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcc
Q 002347 20 QIHIQDIKPWPPS---QSL-RSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDAD 95 (933)
Q Consensus 20 ~IhIqeIKPWPPS---qSL-rSlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~ 95 (933)
.|+|.+-+-.|+. ... .+=.-|.+...+.......|.++--+ -.=.|||.|.+++...
T Consensus 6 ~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~~----------- 67 (126)
T 1rlw_A 6 TVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNND-------INPVWNETFEFILDPN----------- 67 (126)
T ss_dssp EEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTC-------SSCEEEEEEEEEECTT-----------
T ss_pred EEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCC-------CCCcccceEEEEecCC-----------
Confidence 4555555556651 111 12234666665444455666655222 1247999999986321
Q ss_pred cccccceEEEecccccccccccceeeeccccc
Q 002347 96 TFLKNCLEFNLYEPRRDKTQLLATATIDLADY 127 (933)
Q Consensus 96 ~FqKN~LEfnLyE~RrdK~QlLGtAvIdLADy 127 (933)
+...|.|.+|+-.+-+-.+||.+.|+|.++
T Consensus 68 --~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l 97 (126)
T 1rlw_A 68 --QENVLEITLMDANYVMDETLGTATFTVSSM 97 (126)
T ss_dssp --SCCEEEEEEEECCSSCCEEEEEEEEEGGGS
T ss_pred --CCCEEEEEEEECCCCCCceeEEEEEEHHHc
Confidence 135799999987544448999999999986
No 22
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=71.74 E-value=5.9 Score=34.43 Aligned_cols=71 Identities=17% Similarity=0.378 Sum_probs=45.5
Q ss_pred EEeecceeeeEEEEeecccCCCCcccccccceEEEecccccc-cccccceeeeccccccccccccccccccccccccccC
Q 002347 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNT 149 (933)
Q Consensus 71 IEFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~Rrd-K~QlLGtAvIdLADyGii~e~~sis~p~n~Krs~Rn~ 149 (933)
=.|||.|.+++. + . ...|.|.+|+-.+- +-.+||.+.|+|.++- +....-.|+.-+ .-+..
T Consensus 58 P~wne~f~f~~~---~-------~----~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~---~~~~~w~~L~~~-~~~~~ 119 (133)
T 2ep6_A 58 PEWNKVFTFPIK---D-------I----HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIR---DGQPNCYVLKNK-DLEQA 119 (133)
T ss_dssp CCCCEEEEEEES---C-------T----TCEEEEEEEEEETTEEEEECCBCEEEGGGCC---SSCCEECCCBCS-CTTSC
T ss_pred CccccEEEEEec---C-------C----CCEEEEEEEECCCCCCCCeeEEEEEEHHHcc---CCCceEEEeecC-CCCCc
Confidence 469999999874 1 1 24699999987553 2389999999999963 222344555422 22334
Q ss_pred CCceEEEEEe
Q 002347 150 AQPVLFIKIQ 159 (933)
Q Consensus 150 ~qP~Lyv~Iq 159 (933)
.+-.|.|+|+
T Consensus 120 ~~G~i~l~i~ 129 (133)
T 2ep6_A 120 FKGVIYLEMD 129 (133)
T ss_dssp CSSEEEEEEE
T ss_pred cceEEEEEEE
Confidence 5566666664
No 23
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=70.84 E-value=2.4 Score=38.15 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=54.4
Q ss_pred EEEeeeecCCCCCcccc-ccceEEEEeecCCC--CCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccc
Q 002347 20 QIHIQDIKPWPPSQSLR-SLRSVMIQWQNGDR--NSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADT 96 (933)
Q Consensus 20 ~IhIqeIKPWPPSqSLr-SlrsVllqWENGd~--~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~ 96 (933)
.|+|.+-+--|+..... +=.-|.+...++.+ ....|.++--+ -.=.|||.|.+++.. +.
T Consensus 28 ~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~-----------~~ 89 (159)
T 1tjx_A 28 TVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNT-------LNPYYNESFSFEVPF-----------EQ 89 (159)
T ss_dssp EEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSC-------SSCEEEEEEEEECCG-----------GG
T ss_pred EEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCC-------CCCcccceEEEEcCH-----------HH
Confidence 35566666666543221 12245555543322 34555555222 235799999987532 22
Q ss_pred ccccceEEEecccccc-cccccceeeecccccc
Q 002347 97 FLKNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (933)
Q Consensus 97 FqKN~LEfnLyE~Rrd-K~QlLGtAvIdLADyG 128 (933)
.+...|.|.+|+-.+- +-.+||.+.|+|...|
T Consensus 90 l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~ 122 (159)
T 1tjx_A 90 IQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTG 122 (159)
T ss_dssp GGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH
T ss_pred hCCcEEEEEEEECCCCCCCceEEEEEECCCCCC
Confidence 4566799999987543 2389999999998765
No 24
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.45 E-value=17 Score=31.56 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=50.9
Q ss_pred EEEeeeecCCCCCccccccceEEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcccccc
Q 002347 20 QIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLK 99 (933)
Q Consensus 20 ~IhIqeIKPWPPSqSLrSlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~FqK 99 (933)
.|+|.+-+-.|+...-.+=.-|.+... |. ...|.++- +.-.=.|||.|.+++..... -..
T Consensus 10 ~v~v~~a~~L~~~~~g~~dpyv~v~~~-~~--~~kT~v~~-------~t~nP~wne~f~f~v~~~~~----------~~~ 69 (140)
T 2dmh_A 10 RVIVESASNIPKTKFGKPDPIVSVIFK-DE--KKKTKKVD-------NELNPVWNEILEFDLRGIPL----------DFS 69 (140)
T ss_dssp EEEEEEEESCCCCSSSCCCEEEEEECS-SC--EEECCCCC-------SCSSCEEEEEEEEECSSCCC----------CTT
T ss_pred EEEEEEeeCCCCCCCCCCCeEEEEEEC-CE--eEEeeeec-------CCCCCccCcEEEEEeccccc----------CCC
Confidence 345555554554332112234555554 32 35555542 11235799999887632110 124
Q ss_pred cceEEEecccccc-cccccceeeeccccc
Q 002347 100 NCLEFNLYEPRRD-KTQLLATATIDLADY 127 (933)
Q Consensus 100 N~LEfnLyE~Rrd-K~QlLGtAvIdLADy 127 (933)
..|.|.+|+-.+- +-.+||.+.|+|.++
T Consensus 70 ~~l~i~V~d~d~~~~~~~lG~~~i~l~~l 98 (140)
T 2dmh_A 70 SSLGIIVKDFETIGQNKLIGTATVALKDL 98 (140)
T ss_dssp CEEEEEEEETTCSSSCCCCEEEEEEGGGT
T ss_pred CEEEEEEEECCCCCCCceEEEEEEEHHHh
Confidence 6799999987543 238999999999986
No 25
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.35 E-value=16 Score=31.93 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=54.3
Q ss_pred EEeeeecCCCCCccccccceEEEEeecCCC--CCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 002347 21 IHIQDIKPWPPSQSLRSLRSVMIQWQNGDR--NSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (933)
Q Consensus 21 IhIqeIKPWPPSqSLrSlrsVllqWENGd~--~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (933)
|+|.+-+--|+.....+=.-|.+..-.+.+ ....|.++--+ -.=.|||.|.+++.. +..+
T Consensus 28 v~v~~a~~L~~~d~~g~dpyv~v~l~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~-----------~~l~ 89 (142)
T 2dmg_A 28 VVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKT-------LNPVFDQSFDFSVSL-----------PEVQ 89 (142)
T ss_dssp EEEEEEECCCCSSTTCCCEEEEEEEESCCCSSSCEECCCCCSC-------SSCEEEEEEEECCCH-----------HHHH
T ss_pred EEEEEeECCCCCCCCCCCeeEEEEEEcCCCCCCcccCCccCCC-------CCCCcCceEEEEecH-----------HHhC
Confidence 445555444443322233456666654433 44556655221 235799999987532 1234
Q ss_pred ccceEEEecccccc-c-c-cccceeeeccccccc
Q 002347 99 KNCLEFNLYEPRRD-K-T-QLLATATIDLADYGI 129 (933)
Q Consensus 99 KN~LEfnLyE~Rrd-K-~-QlLGtAvIdLADyGi 129 (933)
...|.|.+|+-.+- + - .+||.+.|+|++...
T Consensus 90 ~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~ 123 (142)
T 2dmg_A 90 RRTLDVAVKNSGGFLSKDKGLLGKVLVALASEEL 123 (142)
T ss_dssp HCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTT
T ss_pred cCEEEEEEEECCCccccCCcEEEEEEEecccccc
Confidence 56899999987542 1 1 599999999998754
No 26
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=67.07 E-value=16 Score=32.02 Aligned_cols=91 Identities=18% Similarity=0.223 Sum_probs=55.0
Q ss_pred EEEeeeecCCCCCcccc-ccceEEEEeecCC--CCCCCcccccCCCcccccCceEEeecceeee-EEEEeecccCCCCcc
Q 002347 20 QIHIQDIKPWPPSQSLR-SLRSVMIQWQNGD--RNSGSTKTVGPSLGSVIGEGKIEFNESFRLR-VTLLRDMNVKNKDAD 95 (933)
Q Consensus 20 ~IhIqeIKPWPPSqSLr-SlrsVllqWENGd--~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~-vtL~ke~s~kg~~~~ 95 (933)
.|+|.+-+-.|+..... +=.-|.+...++. .....|.++-- .-.-.|||.|.++ +. .+
T Consensus 32 ~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-------t~nP~wne~f~f~~~~-----------~~ 93 (142)
T 2chd_A 32 QCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN-------TRNPVWNETLQYHGIT-----------EE 93 (142)
T ss_dssp EEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCS-------CSSCEEEEEEEEESCC-----------HH
T ss_pred EEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCC-------CCCCcCcCEEEEcccC-----------HH
Confidence 56666666666543221 2234556655432 24455655521 1235799999876 21 12
Q ss_pred cccccceEEEeccccccc-ccccceeeecccccc
Q 002347 96 TFLKNCLEFNLYEPRRDK-TQLLATATIDLADYG 128 (933)
Q Consensus 96 ~FqKN~LEfnLyE~RrdK-~QlLGtAvIdLADyG 128 (933)
..+...|.|.+|+-.+-. -.+||.+.|+|.++.
T Consensus 94 ~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~ 127 (142)
T 2chd_A 94 DMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLK 127 (142)
T ss_dssp HHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCC
T ss_pred HccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcC
Confidence 344568999999875432 289999999999863
No 27
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=67.00 E-value=2.2 Score=37.31 Aligned_cols=91 Identities=23% Similarity=0.293 Sum_probs=54.6
Q ss_pred EEEeeeecCCCCCccc-cccceEEEEeecCCC-----------CCCCcccccCCCcccccCceEEeecceeee-EEEEee
Q 002347 20 QIHIQDIKPWPPSQSL-RSLRSVMIQWQNGDR-----------NSGSTKTVGPSLGSVIGEGKIEFNESFRLR-VTLLRD 86 (933)
Q Consensus 20 ~IhIqeIKPWPPSqSL-rSlrsVllqWENGd~-----------~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~-vtL~ke 86 (933)
.|+|.+-+--|+.... .+=.-|.+....+.. ....|.++--+ -.=.|||.|.++ +..
T Consensus 21 ~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~~v~~--- 90 (142)
T 1rh8_A 21 IIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS-------LNPEWNQTVIYKSISM--- 90 (142)
T ss_dssp EEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHH-------HSCEEEEEEEECSCCH---
T ss_pred EEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCC-------CCCCCCCEEEECCcCH---
Confidence 4666666666654322 122346666655432 23555554211 125799999875 322
Q ss_pred cccCCCCcccccccceEEEecccccc-cccccceeeecccccc
Q 002347 87 MNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (933)
Q Consensus 87 ~s~kg~~~~~FqKN~LEfnLyE~Rrd-K~QlLGtAvIdLADyG 128 (933)
+......|.|.+|+-.+- +-.+||.+.|+|.+..
T Consensus 91 --------~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~ 125 (142)
T 1rh8_A 91 --------EQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTS 125 (142)
T ss_dssp --------HHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCG
T ss_pred --------HHccCCEEEEEEEECCCCCCCceEEEEEEeccccc
Confidence 123456899999987543 2389999999999864
No 28
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=64.92 E-value=60 Score=32.11 Aligned_cols=89 Identities=24% Similarity=0.276 Sum_probs=53.5
Q ss_pred EEEeeeecCCCCCccc-cccceEEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 002347 20 QIHIQDIKPWPPSQSL-RSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (933)
Q Consensus 20 ~IhIqeIKPWPPSqSL-rSlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (933)
.|+|.+-+--|+.... .+=.-|.+....+.+....|.++--+ -.=.|||.|.+++.. +..+
T Consensus 23 ~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~-----------~~l~ 84 (296)
T 1dqv_A 23 VVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKT-------LNPIFNETFQFSVPL-----------AELA 84 (296)
T ss_dssp EEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSC-------SSCEEEEEEEEECCG-----------GGGS
T ss_pred EEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCC-------CCCcEeeEEEEEecH-----------HHhc
Confidence 4666666666654321 12234666664444455566655221 235899999987531 1234
Q ss_pred ccceEEEecccccc-cccccceeeec-ccc
Q 002347 99 KNCLEFNLYEPRRD-KTQLLATATID-LAD 126 (933)
Q Consensus 99 KN~LEfnLyE~Rrd-K~QlLGtAvId-LAD 126 (933)
...|.|.+|+-.+- +-.+||.+.|+ |.+
T Consensus 85 ~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~ 114 (296)
T 1dqv_A 85 QRKLHFSVYDFDRFSRHDLIGQVVLDNLLE 114 (296)
T ss_dssp SCCCEEEEEECCSSSCCCEEEEEECCCTTG
T ss_pred CCEEEEEEEEcCCCCCCceEEEEEeccccc
Confidence 46799999987543 23899999996 444
No 29
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=63.53 E-value=27 Score=31.29 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=49.0
Q ss_pred EEeeeecCCCCCccccccceEEEEee--cCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 002347 21 IHIQDIKPWPPSQSLRSLRSVMIQWQ--NGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (933)
Q Consensus 21 IhIqeIKPWPPSqSLrSlrsVllqWE--NGd~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (933)
|+|.+-+--|+...=.+=.-|.+... .+......|.++--++ .=.|||.|.+++.. +...
T Consensus 31 V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~-------nP~wne~f~f~v~~-----------~~~~ 92 (153)
T 3fbk_A 31 LHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCR-------DPAFHEHFFFPVQE-----------EDDQ 92 (153)
T ss_dssp EEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCS-------SCEEEEEEEEECCG-----------GGTT
T ss_pred EEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCC-------CCccccEEEEeccc-----------HHhC
Confidence 45555444443321111223444432 2234455565553222 24799999887531 1122
Q ss_pred ccceEEEecccccc-c-ccccceeeeccccc
Q 002347 99 KNCLEFNLYEPRRD-K-TQLLATATIDLADY 127 (933)
Q Consensus 99 KN~LEfnLyE~Rrd-K-~QlLGtAvIdLADy 127 (933)
+ .|.|.+|+-.+- + -.+||.+.|+|.++
T Consensus 93 ~-~L~i~V~d~d~~~~~d~~lG~~~i~l~~l 122 (153)
T 3fbk_A 93 K-RLLVTVWNRASQSRQSGLIGCMSFGVKSL 122 (153)
T ss_dssp S-EEEEEEEECCSSGGGCEEEEEEEEEHHHH
T ss_pred C-EEEEEEEeCCCCCCCCcEEEEEEEEHHHh
Confidence 2 499999987552 2 37999999999984
No 30
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=62.19 E-value=3.6 Score=37.94 Aligned_cols=88 Identities=9% Similarity=0.103 Sum_probs=51.5
Q ss_pred EEEeeeecCCCCCcc--ccccceEEEEeecCCC--CCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcc
Q 002347 20 QIHIQDIKPWPPSQS--LRSLRSVMIQWQNGDR--NSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDAD 95 (933)
Q Consensus 20 ~IhIqeIKPWPPSqS--LrSlrsVllqWENGd~--~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~ 95 (933)
.|+|.+-+-.|+... =.+=.-|.+...++.+ ....|.++--+ -.=.|||.|.+++..
T Consensus 33 ~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~------------ 93 (171)
T 2q3x_A 33 EVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKT-------LDPLYQQSLVFDESP------------ 93 (171)
T ss_dssp EEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSC-------SSCEEEEEEECSSCC------------
T ss_pred EEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCC-------CCCCCCcEEEEEecC------------
Confidence 355556555554331 1122345555444322 24455555221 235799999988631
Q ss_pred cccccceEEEec-cccccc-ccccceeeecccccc
Q 002347 96 TFLKNCLEFNLY-EPRRDK-TQLLATATIDLADYG 128 (933)
Q Consensus 96 ~FqKN~LEfnLy-E~RrdK-~QlLGtAvIdLADyG 128 (933)
+...|.|.+| +-.+-+ -.+||.+.|+|+++-
T Consensus 94 --~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~ 126 (171)
T 2q3x_A 94 --QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELD 126 (171)
T ss_dssp --TTEEEEEEEEEECSTTCSSEEEEEEEECGGGSC
T ss_pred --CCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcc
Confidence 2367999999 654422 289999999999863
No 31
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=61.98 E-value=6 Score=34.72 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=41.7
Q ss_pred ceEEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcccccccceEEEecccccc-ccccc
Q 002347 39 RSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLL 117 (933)
Q Consensus 39 rsVllqWENGd~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~Rrd-K~QlL 117 (933)
.-|.++- ++...+.|.++--++ .=.|||.|.+++.- . ..|+|.+|+-.+- +-.+|
T Consensus 40 Pyv~v~l--~~~~~~~T~~~~~t~-------nP~WnE~f~f~v~~---~------------~~L~~~V~d~d~~~~dd~i 95 (136)
T 1gmi_A 40 PYIALNV--DDSRIGQTATKQKTN-------SPAWHDEFVTDVCN---G------------RKIELAVFHDAPIGYDDFV 95 (136)
T ss_dssp EEEEEEE--TTEEEEECCCCSSCS-------SCEEEEEEEEEEEE---E------------CEEEEEEEECCSSSSCEEE
T ss_pred cEEEEEE--CCeEeeeeeEECCCc-------CCccCCEEEEEecC---C------------CEEEEEEEeCCCCCCCCEE
Confidence 3555555 333345555542222 23799999998631 1 4799999986432 22799
Q ss_pred ceeeeccccc
Q 002347 118 ATATIDLADY 127 (933)
Q Consensus 118 GtAvIdLADy 127 (933)
|.+.|+|.++
T Consensus 96 G~~~i~l~~l 105 (136)
T 1gmi_A 96 ANCTIQFEEL 105 (136)
T ss_dssp EEEEEEHHHH
T ss_pred EEEEEEHHHh
Confidence 9999999875
No 32
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=60.76 E-value=6.2 Score=33.81 Aligned_cols=92 Identities=24% Similarity=0.299 Sum_probs=51.9
Q ss_pred EEEeeeecCCCCCcccc-ccceEEEEeecC--CCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccc
Q 002347 20 QIHIQDIKPWPPSQSLR-SLRSVMIQWQNG--DRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADT 96 (933)
Q Consensus 20 ~IhIqeIKPWPPSqSLr-SlrsVllqWENG--d~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~ 96 (933)
.|+|.+-+--|+..... +=.-|.+..-.+ ......|.++--+ -.=.|||.|.+++.- .+.
T Consensus 21 ~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~~~~----------~~~ 83 (129)
T 2bwq_A 21 IVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT-------LEPKWNQTFIYSPVH----------RRE 83 (129)
T ss_dssp EEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSB-------SSCEEEEEEEECSCC----------GGG
T ss_pred EEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCC-------CCCccccEEEEccCC----------HHH
Confidence 45565555555433211 223455554332 2344555555222 234799999987411 123
Q ss_pred ccccceEEEeccccccc---ccccceeeecccccc
Q 002347 97 FLKNCLEFNLYEPRRDK---TQLLATATIDLADYG 128 (933)
Q Consensus 97 FqKN~LEfnLyE~RrdK---~QlLGtAvIdLADyG 128 (933)
.....|.|.+|+-.+-. -.+||.+.|+|++.-
T Consensus 84 ~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~ 118 (129)
T 2bwq_A 84 FRERMLEITLWDQARVREEESEFLGEILIELETAL 118 (129)
T ss_dssp GGGCEEEEEEEEC-------CEEEEEEEEEGGGCC
T ss_pred hcCCeEEEEEEECCcCcCcCCceeEEEEEEccccC
Confidence 45568999999876533 479999999999853
No 33
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=60.53 E-value=40 Score=29.83 Aligned_cols=89 Identities=18% Similarity=0.268 Sum_probs=52.1
Q ss_pred EEEeeeecCCCCCcccc-ccceEEEEeecCC--CCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccc
Q 002347 20 QIHIQDIKPWPPSQSLR-SLRSVMIQWQNGD--RNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADT 96 (933)
Q Consensus 20 ~IhIqeIKPWPPSqSLr-SlrsVllqWENGd--~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~ 96 (933)
.|+|.+-+--|+..... +=.-|.+...+.. .....|.++--+ -.=.|||.|.+++.- .+
T Consensus 34 ~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~----------~~- 95 (149)
T 1a25_A 34 IVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCS-------LNPEWNETFRFQLKE----------SD- 95 (149)
T ss_dssp EEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSC-------SSCEEEEEEEEECCS----------GG-
T ss_pred EEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCC-------CCCcCCcEEEEEecc----------cc-
Confidence 45555555555443221 2234555554422 344556555221 235799999988631 01
Q ss_pred ccccceEEEecccccc-cccccceeeeccccc
Q 002347 97 FLKNCLEFNLYEPRRD-KTQLLATATIDLADY 127 (933)
Q Consensus 97 FqKN~LEfnLyE~Rrd-K~QlLGtAvIdLADy 127 (933)
....|.|.+|+-.+- +-.+||.+.|+|+++
T Consensus 96 -~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l 126 (149)
T 1a25_A 96 -KDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 126 (149)
T ss_dssp -GGCEEEEEEEECCSSSCCEEEEEEEEEHHHH
T ss_pred -CCCEEEEEEEECCCCCCCCEEEEEEEEHHHh
Confidence 124699999987543 238999999999986
No 34
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=59.23 E-value=5.8 Score=37.38 Aligned_cols=90 Identities=19% Similarity=0.242 Sum_probs=54.1
Q ss_pred cceEEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcccccccceEEEecccccc-cccc
Q 002347 38 LRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQL 116 (933)
Q Consensus 38 lrsVllqWENGd~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~Rrd-K~Ql 116 (933)
=.-|.|+-. +...+.|.++--++ .=.+||.|.++|. + ...|+|.+|+-.+- +-.+
T Consensus 61 DPYv~v~l~--~~~~~kT~v~~ktl-------nP~WNE~F~f~v~---~------------~~~L~~~V~D~d~~~~dd~ 116 (157)
T 2fk9_A 61 DPYLTVSVD--QVRVGQTSTKQKTN-------KPTYNEEFCANVT---D------------GGHLELAVFHETPLGYDHF 116 (157)
T ss_dssp CEEEEEEET--TEEEEECCCCSSCS-------SCEEEEEEEEEEE---E------------ECEEEEEEEECCSSSSCEE
T ss_pred CeEEEEEEC--CEeeEEeeecCCCC-------CCccCcEEEEEcC---C------------CCEEEEEEEECCCCCCCCE
Confidence 345666662 33345666543222 1279999999874 1 13699999985332 2289
Q ss_pred cceeeecccccccc---ccccccccccccccccccCCCceEEEEEe
Q 002347 117 LATATIDLADYGIV---KETLSVNAPMNSKRSFRNTAQPVLFIKIQ 159 (933)
Q Consensus 117 LGtAvIdLADyGii---~e~~sis~p~n~Krs~Rn~~qP~Lyv~Iq 159 (933)
||.+.|+|.++=-- .+....-+|+. .+-.|+|+|+
T Consensus 117 iG~~~i~l~~l~~~~~~~~~~~~W~~L~--------~~G~i~l~l~ 154 (157)
T 2fk9_A 117 VANCTLQFQELLRTTGASDTFEGWVDLE--------PEGKVFVVIT 154 (157)
T ss_dssp EEEEEEEHHHHHHHHTTCSEEEEEEECB--------SSCEEEEEEE
T ss_pred EEEEEEEHHHhhcccCCCCcccEEEECC--------CCcEEEEEEE
Confidence 99999999985211 02223344442 2677888776
No 35
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=54.32 E-value=6.6 Score=38.10 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=35.0
Q ss_pred EEeecceeeeEEEEeecccCCCCcccccccceEEEecccccc-cccccceeeecccccc
Q 002347 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (933)
Q Consensus 71 IEFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~Rrd-K~QlLGtAvIdLADyG 128 (933)
=.|||.|.+++.. +.++...|.|.+|+-.+- +-.+||.+.|+|...|
T Consensus 200 P~wne~f~f~v~~-----------~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~ 247 (284)
T 2r83_A 200 PYYNESFSFEVPF-----------EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTG 247 (284)
T ss_dssp CEEEEEEEEECCT-----------TTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCH
T ss_pred CEEceeEEEeCCH-----------HHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCC
Confidence 4799999887522 235566899999987653 2389999999998644
No 36
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=53.42 E-value=3.7 Score=40.77 Aligned_cols=48 Identities=8% Similarity=0.092 Sum_probs=37.0
Q ss_pred EEeecceeeeEEEEeecccCCCCcccccccceEEEecccccccc-cccceeeeccccccc
Q 002347 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKT-QLLATATIDLADYGI 129 (933)
Q Consensus 71 IEFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~RrdK~-QlLGtAvIdLADyGi 129 (933)
=.|||.|.+++.. +.++...|+|.+|+-.+... ++||.+.|+|.+.|.
T Consensus 202 P~wne~f~f~v~~-----------~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~ 250 (296)
T 1dqv_A 202 PTYNEALVFDVAP-----------ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP 250 (296)
T ss_dssp CEEEECCCCCCCS-----------GGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH
T ss_pred CeECceEEEEcCH-----------HHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCc
Confidence 5799999887532 23456689999998766433 999999999998865
No 37
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=51.61 E-value=16 Score=32.96 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=28.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhcee
Q 002347 563 VAESKIQQLEHKINMLETELREAAAIEASLYSV 595 (933)
Q Consensus 563 ~~~~kieeLe~rie~LE~ELREaAAlEvsLYSV 595 (933)
.+.+++.+|+.||++++.|+|..+|.=+||=.+
T Consensus 13 ~~~~~~~~l~~~i~~~~~~~~~g~A~a~A~a~l 45 (105)
T 2lme_A 13 KGAHKFRQLDNRLDKLDTRVDKGLASSAALNSL 45 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466999999999999999999999988887543
No 38
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=51.51 E-value=6.8 Score=33.78 Aligned_cols=60 Identities=17% Similarity=0.380 Sum_probs=39.1
Q ss_pred CCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcccccccceEEEecccccc-cccccceeeeccccc
Q 002347 49 DRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADY 127 (933)
Q Consensus 49 d~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~Rrd-K~QlLGtAvIdLADy 127 (933)
......|.++--+ -.=.|||.|.+++.. . + ....|.|.+|+-.+- +-.+||.+.|+|++.
T Consensus 51 ~~~~~kT~~~~~t-------~nP~wne~f~f~~~~--------~--~--~~~~l~i~v~d~d~~~~~~~iG~~~i~l~~l 111 (137)
T 3rdl_A 51 NESKQKTKTIRST-------LNPQWNESFTFKLKP--------S--D--KDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 111 (137)
T ss_dssp CCCCEECCCCCSC-------SSCEEEEEEEEECCG--------G--G--GGCEEEEEEEECCSSSCCEEEEEEEEEHHHH
T ss_pred CCeeecCceEcCC-------CCCCcccEEEEEcCc--------h--h--cCCEEEEEEEECCCCCCCceEEEEEEeHHHh
Confidence 3445556655322 234799999888541 0 1 123599999986443 238999999999987
No 39
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=49.05 E-value=13 Score=33.21 Aligned_cols=44 Identities=11% Similarity=0.198 Sum_probs=32.1
Q ss_pred eEEeecceeeeEEEEeecccCCCCcccccccceEEEecccccccccccceeeeccccc
Q 002347 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADY 127 (933)
Q Consensus 70 KIEFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~RrdK~QlLGtAvIdLADy 127 (933)
.=+|||.|.+.+. +. ...|.|.+|+-.-.+-.+||++.|+|.+.
T Consensus 45 nP~WnE~f~f~v~---~~-----------~~~L~~~V~D~d~~~dd~iG~~~i~l~~l 88 (131)
T 2cjt_A 45 QPSWEQDFMFEIN---RL-----------DLGLTVEVWNKGLIWDTMVGTVWIPLRTI 88 (131)
T ss_dssp SCEEEEEEEEEEC---CC-----------SSEEEEEEEECCSSCEEEEEEEEEEGGGS
T ss_pred CceECCEEEEEEe---CC-----------CCeEEEEEEECCCCCCCeEEEEEEEHHHh
Confidence 3589999999875 10 12499999986421228999999999884
No 40
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=45.39 E-value=31 Score=32.37 Aligned_cols=84 Identities=19% Similarity=0.231 Sum_probs=49.7
Q ss_pred EEEEeeeecCCC-CCccccccceEEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcccc
Q 002347 19 YQIHIQDIKPWP-PSQSLRSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTF 97 (933)
Q Consensus 19 Y~IhIqeIKPWP-PSqSLrSlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GKIEFnEsFrL~vtL~ke~s~kg~~~~~F 97 (933)
..|+|.+-+-.| +.-..++=.-|.+.. +| ....|.++-=+ -.=.|||.|.+++. .
T Consensus 38 L~V~V~~A~~L~~~~~~~~sDPYv~v~~-~~--~~~kT~v~~~t-------lnP~Wne~f~f~v~------~-------- 93 (173)
T 2nq3_A 38 LQITVISAKLKENKKNWFGPSPYVEVTV-DG--QSKKTEKCNNT-------NSPKWKQPLTVIVT------P-------- 93 (173)
T ss_dssp EEEEEEEEEECCCC--CCCCCEEEEEEE-TT--EEEECCCCSSC-------SSCEEEEEEEEEEC------T--------
T ss_pred EEEEEEEeECCCCcccCCCCCeEEEEEE-CC--EEeEccccCCC-------CCCeECCEEEEEeC------C--------
Confidence 344555544444 222222333455555 33 45566655211 23579999999761 0
Q ss_pred cccceEEEecccccc-cccccceeeeccccc
Q 002347 98 LKNCLEFNLYEPRRD-KTQLLATATIDLADY 127 (933)
Q Consensus 98 qKN~LEfnLyE~Rrd-K~QlLGtAvIdLADy 127 (933)
...|.|.+|+-.+- +-.+||.+.|+|.++
T Consensus 94 -~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l 123 (173)
T 2nq3_A 94 -VSKLHFRVWSHQTLKSDVLLGTAALDIYET 123 (173)
T ss_dssp -TCEEEEEEEECCSSSCCEEEEEEEEEHHHH
T ss_pred -CCEEEEEEEECCCCCCCceEEEEEEEHHHh
Confidence 34699999987543 227999999999986
No 41
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=43.98 E-value=14 Score=34.74 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=31.9
Q ss_pred EEeecceeeeEEEEeecccCCCCcccccccceEEEecccccccccccceeeeccccc
Q 002347 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADY 127 (933)
Q Consensus 71 IEFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~RrdK~QlLGtAvIdLADy 127 (933)
=+|||.|.+.+. + + ...|.|.+|+-.-.+-.+||++.|+|.++
T Consensus 55 P~WnE~f~f~v~---~----------~-~~~L~~~V~D~d~~~dd~iG~~~i~L~~l 97 (167)
T 2cjs_A 55 PSWEQDFMFEIN---R----------L-DLGLTVEVWNKGLIWDTMVGTVWIPLRTI 97 (167)
T ss_dssp CEEEEEEEEECC---C----------T-TSEEEEEEEECCSSCCEEEEEEEEEGGGS
T ss_pred CCCCCEEEEEee---C----------C-CCEEEEEEEECCCCCCceEEEEEEEHHHh
Confidence 589999999876 1 1 12499999986422228999999999984
No 42
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=40.04 E-value=20 Score=34.62 Aligned_cols=122 Identities=16% Similarity=0.230 Sum_probs=67.3
Q ss_pred eEEEEEEEeeeecCCCCCccccccceEEEEeecCCCCCCCcccccCCCcccc-cCceEEeecceeeeEEEEeecccCCCC
Q 002347 15 IHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRNSGSTKTVGPSLGSVI-GEGKIEFNESFRLRVTLLRDMNVKNKD 93 (933)
Q Consensus 15 v~vdY~IhIqeIKPWPPSqSLrSlrsVllqWENGd~~SGsT~~V~PSlgs~v-G~GKIEFnEsFrL~vtL~ke~s~kg~~ 93 (933)
.|+-..++|+..+-=|. ++=+-+=+-. +|.+. .|+.+ - .+-..+|||.|+.|+.= .
T Consensus 19 ~~msL~V~l~~a~~Lpg----~~Dp~akv~F-Rg~k~--kTkvi-------~~~~~npvfnE~F~wpl~~-~-------- 75 (144)
T 3l9b_A 19 SHMALIVHLKTVSELRG----RADRIAKVTF-RGQSF--YSRVL-------ENCEDVADFDETFRWPVAS-S-------- 75 (144)
T ss_dssp CCEEEEEEEEEEESCCS----CEEEEEEEEE-TTEEE--ECCCE-------EEECSCEEEEEEEEEEESS-C--------
T ss_pred CcEEEEEEEEEecCCCC----CCCCeEEEEE-eccce--eeEEe-------ccCCCCceEcceEEecCCC-C--------
Confidence 35666667776666663 2212222222 44332 22222 1 34678999999998751 1
Q ss_pred cccccccceEEEeccccc-ccccccceeeeccccccccccccccccccccccccccCCCceEEEEEeecc
Q 002347 94 ADTFLKNCLEFNLYEPRR-DKTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQPAE 162 (933)
Q Consensus 94 ~~~FqKN~LEfnLyE~Rr-dK~QlLGtAvIdLADyGii~e~~sis~p~n~Krs~Rn~~qP~Lyv~IqP~~ 162 (933)
.=.--+|++-||+-.+ -+-.+||+++|-|-+.-.- ....++.|+--.+.-.-.++-.|-|.-||.+
T Consensus 76 --ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~-~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 76 --IDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEE-NRVEVSDTLIDDNNAIIKTSLSMEVRYQAAD 142 (144)
T ss_dssp --CCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHH-SEEEEEEEEECTTSCEEEEEEEEEEEEEETT
T ss_pred --CCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccC-CeEEEeecccCCCCCccccEEEEEEEecCCC
Confidence 1223479999998755 2227999999998765322 2334555554433322223444555556654
No 43
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=29.91 E-value=47 Score=29.68 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=29.0
Q ss_pred ccCccccchhHHHhHHHHHHHHHHHHHHH---HHHHHHHH
Q 002347 553 KVYPRDTRSAVAESKIQQLEHKINMLETE---LREAAAIE 589 (933)
Q Consensus 553 ~~~~e~~~~~~~~~kieeLe~rie~LE~E---LREaAAlE 589 (933)
.-|...+.-++|..+|.||+.|+..||.| ||..|.-|
T Consensus 9 Lm~AVREEVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspE 48 (78)
T 1dip_A 9 LMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPE 48 (78)
T ss_dssp GGGTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 34555566678999999999999999998 67666544
No 44
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=28.70 E-value=26 Score=28.26 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=17.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 002347 564 AESKIQQLEHKINMLETELREA 585 (933)
Q Consensus 564 ~~~kieeLe~rie~LE~ELREa 585 (933)
....+++||.+|+.||..|...
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999888754
No 45
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=28.13 E-value=14 Score=29.94 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=21.5
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCC
Q 002347 841 FNAILRESADEIPTDPVSDPISDS 864 (933)
Q Consensus 841 FNAILRESa~eiPTDPiSDPI~Ds 864 (933)
||..-.+|-=|.|++|-.||++|+
T Consensus 29 ~N~~T~~SqWe~P~~~~~dpl~~~ 52 (52)
T 2jx8_A 29 FNRFTNQSLWEMPVLGQHDVISDP 52 (52)
T ss_dssp EETTTTEEESSCCCCTTSCCCCCC
T ss_pred EECCCCCEEeCCCCCCCCCCCCCC
Confidence 678888999999999999999996
No 46
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.42 E-value=74 Score=26.09 Aligned_cols=30 Identities=10% Similarity=0.207 Sum_probs=24.2
Q ss_pred ccchhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002347 558 DTRSAVAESKIQQLEHKINMLETELREAAA 587 (933)
Q Consensus 558 ~~~~~~~~~kieeLe~rie~LE~ELREaAA 587 (933)
..+-+.|.+++++|..|++.|.+++.|.-+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568889999999999999998887643
No 47
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=25.57 E-value=50 Score=26.97 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.4
Q ss_pred cchhHHHhHHHHHHHHHHHHHHHHH
Q 002347 559 TRSAVAESKIQQLEHKINMLETELR 583 (933)
Q Consensus 559 ~~~~~~~~kieeLe~rie~LE~ELR 583 (933)
.+..+.+..+..||..|..||+||.
T Consensus 5 ~~aefAERsV~KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 5 SKNYHLENEVARLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788899999999999999986
No 48
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=24.47 E-value=60 Score=25.83 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 002347 566 SKIQQLEHKINMLETELREA 585 (933)
Q Consensus 566 ~kieeLe~rie~LE~ELREa 585 (933)
..+++|+.+|+.||++|...
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l 63 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRL 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34778888888888887654
No 49
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=22.10 E-value=3.1e+02 Score=31.09 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=70.6
Q ss_pred eEEEEEEEeeeecCCCCCcc---ccccceEEEEeec--CCCCCCCcccccCCCcccccCc-eEEeecceeeeEEEEeecc
Q 002347 15 IHVDYQIHIQDIKPWPPSQS---LRSLRSVMIQWQN--GDRNSGSTKTVGPSLGSVIGEG-KIEFNESFRLRVTLLRDMN 88 (933)
Q Consensus 15 v~vdY~IhIqeIKPWPPSqS---LrSlrsVllqWEN--Gd~~SGsT~~V~PSlgs~vG~G-KIEFnEsFrL~vtL~ke~s 88 (933)
......|+|.+-+-||+... =.+=.-|.++--. .+.....|++|-= +| -=.|||.|.++++.
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~-------ng~NP~WnE~f~F~v~~----- 562 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITN-------NGFNPRWDMEFEFEVTV----- 562 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTT-------CSSSCEEEEEEEEEESC-----
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccC-------CCCCCccCceEEEEEec-----
Confidence 44567788888888886542 1111234444322 2445567776622 21 24789999988752
Q ss_pred cCCCCcccccccceEEEecccccc-cccccceeeeccccccccccccccccccccccccccCCCceEEEEEe
Q 002347 89 VKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQ 159 (933)
Q Consensus 89 ~kg~~~~~FqKN~LEfnLyE~Rrd-K~QlLGtAvIdLADyGii~e~~sis~p~n~Krs~Rn~~qP~Lyv~Iq 159 (933)
.+ -..|.|.+|+-.+- +-.+||.++|.|.+.- ... -.+||.-++.-. ...+.|||+|+
T Consensus 563 -----~e---l~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~--~G~--r~v~L~d~~g~~-~~~~~L~v~i~ 621 (624)
T 1djx_A 563 -----PD---LALVRFMVEDYDSSSKNDFIGQSTIPWNSLK--QGY--RHVHLLSKNGDQ-HPSATLFVKIS 621 (624)
T ss_dssp -----GG---GCEEEEEEEECCSSSCCEEEEEEEEEGGGBC--CEE--EEEEEECTTSCE-EEEEEEEEEEE
T ss_pred -----CC---CCEEEEEEEEcCCCCCCceeEEEEEEHHHcC--CCc--EEEeCCCCCcCC-CCceEEEEEEE
Confidence 01 14799999987432 3389999999998741 111 246775433221 23467888886
No 50
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.06 E-value=80 Score=23.35 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=14.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002347 564 AESKIQQLEHKINMLETELREAAAIE 589 (933)
Q Consensus 564 ~~~kieeLe~rie~LE~ELREaAAlE 589 (933)
+.+|...|.++|..||-| .||||
T Consensus 5 lkqknarlkqeiaaleye---iaale 27 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYE---IAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHC
T ss_pred HHHhhhHHHHHHHHHHHH---HHHhc
Confidence 556666777777777654 35555
No 51
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=22.06 E-value=40 Score=29.30 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 002347 566 SKIQQLEHKINMLETEL 582 (933)
Q Consensus 566 ~kieeLe~rie~LE~EL 582 (933)
..++.|+.+|+.||.++
T Consensus 22 rEle~le~~Ie~LE~~i 38 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKL 38 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555556666666554
Done!