Query 002348
Match_columns 933
No_of_seqs 216 out of 300
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 22:01:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1356 Putative transcription 100.0 2E-179 5E-184 1532.0 30.1 639 196-912 226-871 (889)
2 PF10497 zf-4CXXC_R1: Zinc-fin 99.8 2.8E-21 6.1E-26 181.1 2.9 75 194-268 2-87 (105)
3 PF02373 JmjC: JmjC domain, hy 99.5 2.3E-14 5E-19 131.6 5.9 86 774-873 29-114 (114)
4 PF13621 Cupin_8: Cupin-like d 98.9 2.1E-10 4.5E-15 117.5 1.4 40 838-877 207-249 (251)
5 smart00558 JmjC A domain famil 96.7 0.0007 1.5E-08 56.6 1.2 53 611-681 3-55 (57)
6 KOG2131 Uncharacterized conser 95.9 0.0081 1.8E-07 67.8 4.4 60 834-893 262-322 (427)
7 cd02340 ZZ_NBR1_like Zinc fing 95.3 0.0079 1.7E-07 48.9 1.4 31 329-359 1-32 (43)
8 cd02249 ZZ Zinc finger, ZZ typ 94.7 0.014 3E-07 47.7 1.1 32 330-361 2-34 (46)
9 cd02335 ZZ_ADA2 Zinc finger, Z 94.4 0.018 3.9E-07 47.8 1.3 32 330-361 2-35 (49)
10 cd02339 ZZ_Mind_bomb Zinc fing 94.0 0.027 5.7E-07 46.4 1.3 30 329-358 1-32 (45)
11 KOG1356 Putative transcription 93.8 0.038 8.2E-07 67.8 2.8 78 275-360 183-261 (889)
12 PF00569 ZZ: Zinc finger, ZZ t 93.8 0.032 7E-07 45.7 1.6 35 327-361 3-39 (46)
13 smart00291 ZnF_ZZ Zinc-binding 93.2 0.045 9.8E-07 44.4 1.4 36 328-363 4-40 (44)
14 PF07883 Cupin_2: Cupin domain 92.2 0.061 1.3E-06 45.5 1.1 26 841-866 38-63 (71)
15 cd02344 ZZ_HERC2 Zinc finger, 91.9 0.082 1.8E-06 43.7 1.4 31 329-359 1-33 (45)
16 COG1917 Uncharacterized conser 91.8 0.071 1.5E-06 51.3 1.2 57 810-871 57-115 (131)
17 KOG2130 Phosphatidylserine-spe 91.2 0.13 2.9E-06 57.5 2.5 43 838-880 261-303 (407)
18 cd02341 ZZ_ZZZ3 Zinc finger, Z 91.1 0.11 2.5E-06 43.3 1.4 32 330-361 2-37 (48)
19 cd02345 ZZ_dah Zinc finger, ZZ 90.1 0.15 3.3E-06 42.5 1.4 33 329-361 1-35 (49)
20 COG0662 {ManC} Mannose-6-phosp 89.5 0.25 5.4E-06 48.0 2.6 43 839-881 74-116 (127)
21 cd02338 ZZ_PCMF_like Zinc fing 89.4 0.18 3.9E-06 42.0 1.3 33 329-361 1-35 (49)
22 cd02337 ZZ_CBP Zinc finger, ZZ 86.1 0.32 6.9E-06 39.4 0.9 29 330-359 2-31 (41)
23 TIGR03214 ura-cupin putative a 85.5 0.42 9.1E-06 52.1 1.7 30 835-864 213-242 (260)
24 KOG0823 Predicted E3 ubiquitin 83.5 1.2 2.6E-05 48.2 3.9 49 196-250 44-92 (230)
25 cd02334 ZZ_dystrophin Zinc fin 83.2 0.85 1.8E-05 38.4 2.2 35 329-363 1-37 (49)
26 PHA02926 zinc finger-like prot 82.1 0.58 1.3E-05 50.5 1.0 54 197-251 168-228 (242)
27 cd00162 RING RING-finger (Real 82.1 1.1 2.4E-05 34.0 2.3 42 202-250 2-43 (45)
28 PRK09943 DNA-binding transcrip 81.1 1.1 2.4E-05 45.8 2.6 55 818-877 129-183 (185)
29 PRK13290 ectC L-ectoine syntha 79.1 1.3 2.8E-05 43.6 2.2 36 840-877 75-110 (125)
30 KOG0320 Predicted E3 ubiquitin 78.6 2.5 5.5E-05 44.4 4.2 48 196-250 128-175 (187)
31 PF07649 C1_3: C1-like domain; 77.5 0.94 2E-05 33.9 0.6 27 330-356 2-29 (30)
32 cd02343 ZZ_EF Zinc finger, ZZ 77.2 1.2 2.6E-05 37.5 1.2 35 329-363 1-36 (48)
33 TIGR00218 manA mannose-6-phosp 77.0 1.2 2.7E-05 49.2 1.6 15 845-859 156-170 (302)
34 PF13639 zf-RING_2: Ring finge 76.7 0.84 1.8E-05 36.4 0.1 29 213-249 16-44 (44)
35 COG4101 Predicted mannose-6-ph 74.7 1.4 3.1E-05 43.6 1.1 26 841-866 89-114 (142)
36 PRK15131 mannose-6-phosphate i 74.3 1.6 3.5E-05 50.5 1.6 17 843-859 240-256 (389)
37 PF01050 MannoseP_isomer: Mann 73.8 2 4.2E-05 43.7 1.9 22 845-866 107-128 (151)
38 cd02342 ZZ_UBA_plant Zinc fing 73.2 1.9 4.2E-05 35.6 1.4 32 329-360 1-34 (43)
39 PLN03208 E3 ubiquitin-protein 72.3 3.7 8.1E-05 43.6 3.6 52 197-251 16-77 (193)
40 KOG0317 Predicted E3 ubiquitin 72.1 2.6 5.7E-05 47.0 2.5 48 196-252 236-283 (293)
41 PHA02929 N1R/p28-like protein; 71.9 2.6 5.7E-05 46.0 2.4 28 217-251 198-225 (238)
42 PF13920 zf-C3HC4_3: Zinc fing 71.2 2.6 5.6E-05 34.6 1.7 42 200-250 3-45 (50)
43 smart00184 RING Ring finger. E 71.0 2.6 5.7E-05 30.7 1.6 27 216-248 13-39 (39)
44 COG1482 ManA Phosphomannose is 69.1 2.5 5.3E-05 47.8 1.5 19 842-860 160-178 (312)
45 PRK04190 glucose-6-phosphate i 68.9 3.5 7.6E-05 43.5 2.5 43 838-881 118-160 (191)
46 KOG2508 Predicted phospholipas 67.8 5.4 0.00012 45.9 3.8 39 503-541 33-74 (437)
47 KOG0978 E3 ubiquitin ligase in 65.7 1.5 3.3E-05 53.9 -1.0 44 198-249 642-685 (698)
48 PLN02288 mannose-6-phosphate i 64.8 3.3 7.1E-05 48.1 1.5 15 845-859 256-270 (394)
49 TIGR00599 rad18 DNA repair pro 63.0 5.7 0.00012 46.3 3.0 48 197-253 24-71 (397)
50 KOG4582 Uncharacterized conser 62.9 3.3 7.1E-05 46.0 1.0 33 328-360 152-186 (278)
51 PF15227 zf-C3HC4_4: zinc fing 62.7 3.9 8.4E-05 33.0 1.1 28 218-248 15-42 (42)
52 PF13248 zf-ribbon_3: zinc-rib 61.9 3.9 8.4E-05 30.0 0.9 25 328-352 2-26 (26)
53 TIGR01479 GMP_PMI mannose-1-ph 61.2 4.4 9.6E-05 47.7 1.7 43 837-879 412-454 (468)
54 PF10571 UPF0547: Uncharacteri 61.0 4.9 0.00011 29.9 1.3 23 330-352 2-24 (26)
55 PF13923 zf-C3HC4_2: Zinc fing 60.8 6 0.00013 30.9 1.9 29 213-248 11-39 (39)
56 PF13240 zinc_ribbon_2: zinc-r 59.8 4.4 9.6E-05 29.2 0.9 23 330-352 1-23 (23)
57 PF00190 Cupin_1: Cupin; Inte 59.2 7.7 0.00017 38.2 2.7 38 841-878 81-125 (144)
58 PF14634 zf-RING_5: zinc-RING 58.5 8.8 0.00019 30.9 2.5 42 202-250 2-44 (44)
59 PF00097 zf-C3HC4: Zinc finger 57.4 5 0.00011 31.2 0.9 40 203-248 2-41 (41)
60 smart00249 PHD PHD zinc finger 56.7 8.9 0.00019 29.5 2.2 46 201-248 1-47 (47)
61 KOG2583 Ubiquinol cytochrome c 55.5 8 0.00017 45.1 2.4 46 472-519 158-206 (429)
62 KOG0457 Histone acetyltransfer 54.8 5.2 0.00011 46.9 0.8 34 325-358 11-46 (438)
63 PTZ00194 60S ribosomal protein 53.5 6.3 0.00014 40.1 1.1 43 813-857 18-60 (143)
64 smart00154 ZnF_AN1 AN1-like Zi 53.0 8.8 0.00019 30.8 1.6 31 202-236 1-31 (39)
65 PRK15460 cpsB mannose-1-phosph 51.8 8.3 0.00018 45.9 1.9 46 836-881 420-465 (478)
66 PF08007 Cupin_4: Cupin superf 51.7 14 0.0003 41.5 3.5 41 840-880 176-216 (319)
67 PF00628 PHD: PHD-finger; Int 50.8 2.1 4.5E-05 34.9 -2.3 48 201-249 1-49 (51)
68 COG5432 RAD18 RING-finger-cont 49.3 9 0.0002 43.0 1.6 44 197-250 23-67 (391)
69 smart00835 Cupin_1 Cupin. This 48.3 14 0.0003 36.5 2.6 27 838-864 73-99 (146)
70 PF02041 Auxin_BP: Auxin bindi 48.1 10 0.00022 39.2 1.5 41 819-864 75-115 (167)
71 KOG1814 Predicted E3 ubiquitin 48.0 28 0.00061 40.9 5.2 35 199-234 273-313 (445)
72 KOG3899 Uncharacterized conser 47.1 7.1 0.00015 43.8 0.4 45 212-261 316-369 (381)
73 PF12678 zf-rbx1: RING-H2 zinc 46.7 14 0.0003 33.2 2.0 43 200-249 31-73 (73)
74 TIGR03404 bicupin_oxalic bicup 46.2 14 0.00031 42.5 2.7 83 810-894 259-342 (367)
75 TIGR00570 cdk7 CDK-activating 45.1 23 0.00049 40.3 3.9 46 199-250 3-51 (309)
76 cd02336 ZZ_RSC8 Zinc finger, Z 44.7 11 0.00023 31.4 1.0 33 330-362 2-35 (45)
77 COG3791 Uncharacterized conser 44.5 5.8 0.00012 39.3 -0.7 15 251-265 26-40 (133)
78 TIGR03214 ura-cupin putative a 43.9 16 0.00035 40.0 2.5 47 814-865 77-123 (260)
79 COG5114 Histone acetyltransfer 43.2 7.3 0.00016 44.2 -0.3 31 328-358 5-37 (432)
80 PF01238 PMI_typeI: Phosphoman 41.8 9.1 0.0002 44.0 0.2 18 843-860 253-270 (373)
81 cd00065 FYVE FYVE domain; Zinc 41.6 13 0.00028 30.9 1.1 35 199-234 2-38 (57)
82 PTZ00303 phosphatidylinositol 41.5 13 0.00028 46.4 1.4 33 199-232 460-499 (1374)
83 PRK01191 rpl24p 50S ribosomal 41.1 13 0.00028 37.0 1.1 42 813-856 17-58 (120)
84 PF02938 GAD: GAD domain; Int 40.5 9.9 0.00021 35.4 0.2 41 812-862 53-93 (95)
85 PF01363 FYVE: FYVE zinc finge 38.5 10 0.00022 32.9 -0.1 38 196-234 6-45 (69)
86 PF10272 Tmpp129: Putative tra 36.9 30 0.00064 40.1 3.3 43 114-156 208-250 (358)
87 PRK11171 hypothetical protein; 36.4 20 0.00043 39.4 1.8 28 837-864 98-125 (266)
88 smart00064 FYVE Protein presen 35.7 22 0.00048 30.7 1.6 37 197-234 8-46 (68)
89 KOG2107 Uncharacterized conser 35.1 26 0.00057 36.7 2.2 56 788-860 80-136 (179)
90 PF12861 zf-Apc11: Anaphase-pr 35.0 33 0.0007 32.4 2.6 48 198-250 31-79 (85)
91 smart00504 Ubox Modified RING 34.5 37 0.0008 28.4 2.7 42 201-251 3-44 (63)
92 COG5574 PEX10 RING-finger-cont 34.3 21 0.00046 39.7 1.5 48 197-252 213-261 (271)
93 KOG1280 Uncharacterized conser 34.2 16 0.00034 42.1 0.5 36 324-359 4-41 (381)
94 PRK13264 3-hydroxyanthranilate 34.0 29 0.00063 36.6 2.4 44 838-881 74-117 (177)
95 TIGR03037 anthran_nbaC 3-hydro 33.6 29 0.00064 36.0 2.3 45 838-882 68-112 (159)
96 PRK04023 DNA polymerase II lar 33.2 27 0.00059 45.1 2.4 39 178-220 596-645 (1121)
97 KOG3905 Dynein light intermedi 33.0 19 0.00041 41.6 0.9 24 834-857 289-313 (473)
98 PF03107 C1_2: C1 domain; Int 32.5 25 0.00054 26.5 1.2 27 330-356 2-29 (30)
99 PRK10371 DNA-binding transcrip 32.2 32 0.0007 38.0 2.5 33 835-867 59-91 (302)
100 PF15446 zf-PHD-like: PHD/FYVE 30.3 54 0.0012 34.6 3.6 50 201-251 1-60 (175)
101 KOG1841 Smad anchor for recept 30.2 33 0.00072 44.6 2.4 40 194-234 552-593 (1287)
102 KOG1039 Predicted E3 ubiquitin 30.1 22 0.00049 40.9 0.9 31 218-250 186-218 (344)
103 COG5219 Uncharacterized conser 29.0 21 0.00046 45.6 0.5 32 214-250 1489-1520(1525)
104 COG5540 RING-finger-containing 28.4 36 0.00079 38.7 2.1 50 195-250 319-369 (374)
105 PF14835 zf-RING_6: zf-RING of 28.2 34 0.00074 30.8 1.5 42 198-250 6-48 (65)
106 PF05899 Cupin_3: Protein of u 27.9 31 0.00068 30.7 1.3 17 841-857 45-61 (74)
107 PRK14892 putative transcriptio 27.8 30 0.00065 33.3 1.2 28 324-351 17-51 (99)
108 TIGR03404 bicupin_oxalic bicup 27.6 52 0.0011 38.1 3.3 28 838-865 108-135 (367)
109 PF06844 DUF1244: Protein of u 27.4 26 0.00057 31.7 0.7 13 223-235 11-23 (68)
110 KOG2177 Predicted E3 ubiquitin 27.0 33 0.00072 35.1 1.4 45 196-249 10-54 (386)
111 KOG1819 FYVE finger-containing 26.8 26 0.00056 41.9 0.7 37 197-234 899-937 (990)
112 PRK14559 putative protein seri 26.8 36 0.00079 42.2 1.9 33 325-359 12-50 (645)
113 TIGR01080 rplX_A_E ribosomal p 26.3 36 0.00078 33.6 1.5 44 813-858 13-56 (114)
114 PF12852 Cupin_6: Cupin 26.0 39 0.00084 34.4 1.7 23 842-864 57-79 (186)
115 PRK11171 hypothetical protein; 25.9 39 0.00084 37.2 1.8 30 835-864 218-247 (266)
116 KOG4286 Dystrophin-like protei 25.8 26 0.00056 43.9 0.4 35 330-364 605-641 (966)
117 PRK12380 hydrogenase nickel in 25.3 33 0.00072 33.3 1.0 24 327-350 69-94 (113)
118 KOG2164 Predicted E3 ubiquitin 25.3 34 0.00074 41.1 1.3 51 199-263 186-237 (513)
119 PF08990 Docking: Erythronolid 24.8 55 0.0012 24.8 1.8 17 786-802 3-19 (27)
120 PRK14714 DNA polymerase II lar 24.4 40 0.00087 44.5 1.8 39 178-220 630-686 (1337)
121 KOG3799 Rab3 effector RIM1 and 24.1 22 0.00048 36.2 -0.4 51 197-250 63-115 (169)
122 PF14446 Prok-RING_1: Prokaryo 23.0 35 0.00075 29.8 0.6 24 324-350 17-44 (54)
123 smart00647 IBR In Between Ring 23.0 38 0.00082 28.3 0.8 26 210-236 37-62 (64)
124 PF02311 AraC_binding: AraC-li 22.6 57 0.0012 29.8 2.0 46 835-881 36-83 (136)
125 COG5222 Uncharacterized conser 22.5 55 0.0012 37.2 2.1 42 200-249 275-317 (427)
126 PF09567 RE_MamI: MamI restric 22.3 37 0.00081 37.7 0.8 21 330-350 84-104 (314)
127 PF04810 zf-Sec23_Sec24: Sec23 22.1 20 0.00044 28.8 -0.9 30 214-250 3-32 (40)
128 KOG1785 Tyrosine kinase negati 21.9 39 0.00084 39.7 0.9 43 200-249 370-412 (563)
129 PF02318 FYVE_2: FYVE-type zin 21.6 15 0.00032 35.7 -2.2 45 198-248 53-100 (118)
130 TIGR02297 HpaA 4-hydroxyphenyl 21.3 71 0.0015 34.2 2.7 31 835-865 57-87 (287)
131 KOG1729 FYVE finger containing 21.3 18 0.00038 40.8 -2.0 38 196-234 165-205 (288)
132 KOG0954 PHD finger protein [Ge 21.2 16 0.00035 45.4 -2.3 128 198-355 270-403 (893)
133 KOG2879 Predicted E3 ubiquitin 21.1 89 0.0019 35.3 3.3 50 197-252 237-286 (298)
134 COG3492 Uncharacterized protei 21.0 22 0.00047 34.0 -1.1 15 223-237 42-56 (104)
135 PRK13503 transcriptional activ 20.5 50 0.0011 35.2 1.3 30 836-865 49-78 (278)
136 KOG1814 Predicted E3 ubiquitin 20.5 42 0.00092 39.5 0.8 101 219-363 205-313 (445)
137 KOG0825 PHD Zn-finger protein 20.4 42 0.00091 42.4 0.8 37 212-249 112-150 (1134)
138 PRK15457 ethanolamine utilizat 20.2 57 0.0012 35.9 1.7 75 775-863 142-216 (233)
139 smart00647 IBR In Between Ring 20.1 66 0.0014 26.8 1.7 32 327-358 17-56 (64)
140 KOG0311 Predicted E3 ubiquitin 20.0 49 0.0011 38.4 1.2 59 197-262 41-99 (381)
No 1
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=100.00 E-value=2.4e-179 Score=1531.98 Aligned_cols=639 Identities=42% Similarity=0.709 Sum_probs=574.5
Q ss_pred ccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCcccCccccccCCCccccccc----C
Q 002348 196 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIETSKIN----M 271 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~CNCs~Clr~~g~~~t~~~e----i 271 (933)
++-+.+||||.+.....+-+|+.|+ ..||.+|++.||+....++++..|++|+..|||..|....++++|.... .
T Consensus 226 ~g~~~mC~~C~~tlfn~hw~C~~C~-~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~~q~h~~~~Lm~Tq~i~~~al~ 304 (889)
T KOG1356|consen 226 KGIREMCDRCETTLFNIHWRCPRCG-FGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCNKGQCHALSELMPTQIIPGSALL 304 (889)
T ss_pred cCcchhhhhhcccccceeEEccccC-CeeeecchhhccccchHhHhhhhhhHHHHhcCCccccchhhcccccccchhhhh
Confidence 5888999999999888899999999 5599999999999999999999999999999999999999999997655 6
Q ss_pred ChhhhHHHHH--HHHHhhhhhhHhhcHHhhhhhHhhhhhcccCCCcccccccccCCCCcccccCccccccccccccCcCC
Q 002348 272 TDCEKVEHLR--YLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCS 349 (933)
Q Consensus 272 s~~~kv~~l~--YLl~~LLP~LK~i~~EQ~~E~EiEAkIqG~~~sei~I~~a~~~~DERvyCDnCkTSI~D~HRSC~~Cs 349 (933)
+..++++++. |+|..++|+|+.++.+|..+.+.||+|||..++. +++.+...++|++|||+|.|||.|+||+||+|+
T Consensus 305 ~~~~~~h~~r~k~~I~~~cpcl~~~~~~~~~~~~~e~~vq~~~~~~-~~~~~~~~~~e~~~~~~~~~si~~l~r~cP~~s 383 (889)
T KOG1356|consen 305 DLSDRVHAVREKFGIKAHCPCLKKQNKQQPLDAETEASVQGTEPTS-KPPVTQANPEEPLYCDHCATSIGDLKRSCPDSS 383 (889)
T ss_pred hHHHHHHHHHHHhhHHhhChhHHhhhhhccccHHHHHHHhcCCCCC-CccccccCcCCCccccccccchhhccccCCCcc
Confidence 6788888888 9999999999999999999999999999999988 777777888999999999999999999999999
Q ss_pred cccchhchHHhhcCcCCCCcccceeeeccCcccccCCCCCCcccCCCCCCCCcCCCcccccCCCCCccCCCCCCCCCCCc
Q 002348 350 YELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDC 429 (933)
Q Consensus 350 YDLCL~CC~ELR~G~~~g~~~~~~~~~~rg~~y~~g~~~~~~~~~~~~~~~~~~~~~~W~a~~dGSI~CpPke~ggCg~~ 429 (933)
|++||.||++||.|.+.-..+.++.|.+||..|.||.++...+-....... +.+ ++++|+|.|-|...+||+..
T Consensus 384 ~~~~l~~~~~i~~g~l~~~~e~~~~~~~r~~~~~~g~~~~~~~~~s~~~~~---~~~---~~~ng~~r~l~~~~~g~~~~ 457 (889)
T KOG1356|consen 384 YAICLPWLADLRRGDLKEKEECELMLRSRGVKYEHGPDPIEPSLSSVSVDE---PSS---ANENGSLRDLLLSLAGCLDR 457 (889)
T ss_pred ccccchHHHHhhcCCcccchhHHHHHHHHHHHhhcCccccccccCCCCCCC---Ccc---cccccchhhcccccCccchh
Confidence 999999999999998887777688899999999999877543222111111 112 88899999999999999999
Q ss_pred ceeccccCCcchHHHHHHHHHHHHHHhcccccccccc-ccccCcccchhccccCCCCCCceecCCCCCcCchhhHHHHHH
Q 002348 430 VLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQN-RAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQK 508 (933)
Q Consensus 430 ~L~Lr~ifp~~~is~L~~~aee~~~~~~~~~~~~~~c-s~~~~~~~lrkAA~Re~s~dN~LYcP~~~di~~~~~l~hFQ~ 508 (933)
.|+|+|++|..|.+.++.+||.-+..+-+.... ..| +...+.+.++++|.|+.+.|||||||.+ |..+++||.|||+
T Consensus 458 ~l~lkr~lpn~~~s~i~~~vE~k~~~~~~~~~l-~~~~~~~~~~~~~~s~~~~~~~cdn~Ll~l~~-d~~~~~n~~~FQE 535 (889)
T KOG1356|consen 458 GLKLKRILPNILDSIIASVVENKLTSKLSKPPL-RLCRSSQDGSGLLLSAASHSWLCDNRLLSLKV-DPLNQNNLKHFQE 535 (889)
T ss_pred hhhhhhcCchHHHHHHHHHHHhhcccccCCchh-hcCccccccccCccccCCCCcCCCCceecCcc-CccchhHHHHHHH
Confidence 999999999999999999999888775544332 233 2234567788999999999999999999 5555599999999
Q ss_pred HhhcCCCEEEEccccccCCCCCChhHHHHHHhhhccccccccCCceeEeecCCCceeecchhhhhccccCCccCCCCccc
Q 002348 509 HWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPE 588 (933)
Q Consensus 509 hW~kGePVIVr~Vl~~~s~lsW~P~~mwra~~e~~~~~~~~~~~~vkaIDCld~~eVei~i~qFF~Gy~~gr~~~~~wp~ 588 (933)
||++|||||||||++++++++|+||+|||+|+++.+.-..-.+.++.++||++ ++.+||.||++|+++++|||+
T Consensus 536 hWkqGqPViVs~V~~~l~g~lW~P~a~~~~~g~q~~~l~n~~~~~i~s~d~~~------~fwegFe~~~kr~~~~~g~p~ 609 (889)
T KOG1356|consen 536 HWKQGQPVIVSGVHKKLNGLLWKPEALSRAFGDQVVDLSNCNNSQIISNDCVD------NFWEGFEGYSKRLKSENGWPE 609 (889)
T ss_pred HHhcCCcEEehHhhhhccccccchHHHHHHhccchhhhhcCCCCCccccchhh------hHHHhhcccccCcccccCCee
Confidence 99999999999999999999999999999999987766666677788888887 789999999999999999999
Q ss_pred eeecCCCCCCCchhhhcccchHHHHhCCCCcCcCCCCCccccccccCCCCCCCCCCCcchhhccccccccCCCCCccccc
Q 002348 589 MLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLH 668 (933)
Q Consensus 589 mLKLKDWPps~~F~e~lP~h~~eFi~aLP~~EYT~pr~G~LNLAakLP~~~lkPDLGPK~YIAYG~~eelGrGDSvTkLH 668 (933)
|||||||||+++|+++||+||+|||++|||||||| ++|+||||++||.+|++||||||||||||+++++||||||||||
T Consensus 610 vLKLKDWpp~~~Fkd~lP~r~eell~sLPlpEYt~-r~G~LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr~~gtTnLH 688 (889)
T KOG1356|consen 610 VLKLKDWPPGEDFKDMLPRRFEELLASLPLPEYTD-RDGKLNLASKLPEGFVRPDLGPKLYNAYGVSTELGRGDGTTNLH 688 (889)
T ss_pred EEeecCCCchHhHhhhhhHHHHHHHHcCCchhhhc-CCCccchHhhCcccccCCCCCchhhhhccccccccCCCCceeec
Confidence 99999999999999999999999999999999999 88999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcccccccchHhHHHHHHHHHHHHhhhhhhhhccCCCCccccCCCCCCCCCCCCcccccccccCCCCccc
Q 002348 669 CDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPSGIRG 748 (933)
Q Consensus 669 ~DmSDAVNIL~htaev~~~~~q~~~i~kl~~k~~~q~~~e~~~~~~~~~~~~e~~~~~~~~~~d~~~i~~~~~~~s~~~~ 748 (933)
|||||||||||||++++. +...|+++++++.+++..|+.. ++
T Consensus 689 ~dvSDaVNILvyv~e~~~---~~~~~~~~~k~~~~~~~de~~~---------------------------~~-------- 730 (889)
T KOG1356|consen 689 LDVSDAVNILVYVGEPPG---QIEQIAKVLKKIQEGDLDEITR---------------------------SR-------- 730 (889)
T ss_pred eehhhhhhheeeeccCCc---hHHhHHHHHHhhhhcchhhhhh---------------------------hh--------
Confidence 999999999999998876 4455666666665443322211 00
Q ss_pred ccccccccccCCccccCCCCCCccCCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHH
Q 002348 749 EFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHK 828 (933)
Q Consensus 749 ~~k~~~~~~~g~~~~~~~~~~~~~~~~GAlWDIFrreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk 828 (933)
+. +..+.+|||||||||||||||||||+||++||+| ++.+|+||||||+||||.+||
T Consensus 731 ---~~----------------~~~e~~GALWhIF~~~Dv~KireyL~k~~~E~~~----~~~~v~hPIhDQS~YLd~~lr 787 (889)
T KOG1356|consen 731 ---IS----------------SVSETPGALWHIFRAQDVPKIREYLRKVCKEQGH----EVPKVHHPIHDQSWYLDRYLR 787 (889)
T ss_pred ---cc----------------ccccCCcchhhhhhhcchHHHHHHHHHhhHHhcC----CCCcccCCCcccceeccHHHH
Confidence 00 0136899999999999999999999999999998 689999999999999999999
Q ss_pred HHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHHHhhcCCcccccccchhhhhhe
Q 002348 829 KKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLV 908 (933)
Q Consensus 829 ~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~akEDKLeVkkm 908 (933)
+|||||||||||||+|+||||||||||||||||||+||||||+||||||||.||++||+|||+||++|.|||||||||||
T Consensus 788 ~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp~~h~~~eDKLqvK~m 867 (889)
T KOG1356|consen 788 RRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLPQNHKNHEDKLQVKNM 867 (889)
T ss_pred HHHHHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCCCcccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhh
Q 002348 909 FIKR 912 (933)
Q Consensus 909 ~l~~ 912 (933)
+||+
T Consensus 868 i~hA 871 (889)
T KOG1356|consen 868 IYHA 871 (889)
T ss_pred HHHH
Confidence 9999
No 2
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=99.82 E-value=2.8e-21 Score=181.11 Aligned_cols=75 Identities=31% Similarity=0.706 Sum_probs=67.8
Q ss_pred ccccCCCCccccccCCCCceEec------CcCC--CCcccHhHHhhhCCCCchh---hhhccCCCCCCcccCccccccCC
Q 002348 194 EKELERIKCHQCMKSERKYVVPC------GKCR--TKVYCIQCIKQWYPKMSEL---DVAEICPFCRRNCNCSVCLHTSG 262 (933)
Q Consensus 194 ~kk~~~~~CHQCrqkt~~~~v~C------~~C~--r~~FC~~CL~~rY~e~~~e---dv~~~CP~CRg~CNCs~Clr~~g 262 (933)
+++.+|++||||||||.+.++.| ++|. ++.||++||.+||+++++| +..|.||+|||+|||++|++++|
T Consensus 2 yd~~~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk~g 81 (105)
T PF10497_consen 2 YDSVNGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRKRG 81 (105)
T ss_pred ccCCCCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhccCC
Confidence 57889999999999999999999 6782 3899999999999998765 45799999999999999999999
Q ss_pred Cccccc
Q 002348 263 FIETSK 268 (933)
Q Consensus 263 ~~~t~~ 268 (933)
+.||+.
T Consensus 82 ~~PTg~ 87 (105)
T PF10497_consen 82 WAPTGI 87 (105)
T ss_pred CCCcHH
Confidence 999984
No 3
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.49 E-value=2.3e-14 Score=131.58 Aligned_cols=86 Identities=33% Similarity=0.435 Sum_probs=64.7
Q ss_pred CCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEec
Q 002348 774 SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIP 853 (933)
Q Consensus 774 ~~GAlWDIFrreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIP 853 (933)
.+..+|-+++++|.+|++++++++.. ..+|+| +..+.+.-.+.. ..+.||+.|+|+|++||+||||
T Consensus 29 g~~k~W~~v~~~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~p~~-l~~~gi~~~~~~Q~~Ge~V~i~ 94 (114)
T PF02373_consen 29 GGSKVWYIVPPEDADKFEKFLRSKES------------QNCPQF-LDHKNIFVSPEQ-LKKAGIPVYRFVQKPGEFVFIP 94 (114)
T ss_dssp ESEEEEEEE-GGGHHHHHHHHHHHHH------------HHSTTG-GCTGGEEEGHHH-HHHTTS--EEEEEETT-EEEE-
T ss_pred CcceEeEEechhhhhhHHHHHhhccc------------cccccc-ccccccccceee-eeccCcccccceECCCCEEEEC
Confidence 35789999999999999999998722 134454 444444444443 6779999999999999999999
Q ss_pred CCCccccccccccceecccc
Q 002348 854 AGCPHQVRNLKSCTKVAVDF 873 (933)
Q Consensus 854 AGCPHQVRNLkSCIKVAlDF 873 (933)
+|++|||.|+-.||++|.+|
T Consensus 95 pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 95 PGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp TT-EEEEEESSSEEEEEEEE
T ss_pred CCceEEEEeCCceEEEEecC
Confidence 99999999999999999988
No 4
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=98.94 E-value=2.1e-10 Score=117.49 Aligned_cols=40 Identities=35% Similarity=0.544 Sum_probs=33.2
Q ss_pred cceEEEeecCceeEecCCCccccccc--cc-cceecccccCcc
Q 002348 838 EPWTFEQKLGEAVFIPAGCPHQVRNL--KS-CTKVAVDFVSPE 877 (933)
Q Consensus 838 epWtf~Q~lGEAVFIPAGCPHQVRNL--kS-CIKVAlDFVSPE 877 (933)
.+|++++.+||++|||+|-.|||+|| .. ||.|...|.+|.
T Consensus 207 ~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~~ 249 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTPF 249 (251)
T ss_dssp -EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS-
T ss_pred ceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEecccc
Confidence 89999999999999999999999999 76 999999998764
No 5
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=96.67 E-value=0.0007 Score=56.58 Aligned_cols=53 Identities=42% Similarity=0.644 Sum_probs=42.6
Q ss_pred HHHhCCCCcCcCCCCCccccccccCCCCCCCCCCCcchhhccccccccCCCCCcccccccccccchhhhcc
Q 002348 611 EFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHT 681 (933)
Q Consensus 611 eFi~aLP~~EYT~pr~G~LNLAakLP~~~lkPDLGPK~YIAYG~~eelGrGDSvTkLH~DmSDAVNIL~ht 681 (933)
..+..||+ .+||+.+++.....|+. +|+.+|. .+|+|.+|+|..|.+|++.+.
T Consensus 3 ~~l~~lP~---------~~~ll~~~~~~~~~~~~---~~~~~G~------~~s~t~~H~d~~~~~n~~~~~ 55 (57)
T smart00558 3 NNLAKLPF---------KLNLLSDLPEDILGPDV---PYLYMGM------AGSVTPWHIDDYDLVNYLHQG 55 (57)
T ss_pred chhhhCCC---------cchHHHHCCcccCCCCc---ceEEEeC------CCCccceeEcCCCeEEEEEec
Confidence 34567776 68999999988888877 6666664 478999999999999988764
No 6
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=95.86 E-value=0.0081 Score=67.77 Aligned_cols=60 Identities=27% Similarity=0.394 Sum_probs=49.4
Q ss_pred HhCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHH-HHHHhhcCC
Q 002348 834 EFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLR-LTKEFRLLP 893 (933)
Q Consensus 834 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~r-LteEfR~Lp 893 (933)
++.+.+.++-|.+||+||+|.|==|||-||-..|.|-..++--=|+..=.+ |-+++-.++
T Consensus 262 ~~~~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~nl~~~w~~Lk~~y~a~~ 322 (427)
T KOG2131|consen 262 LFRGPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNATNLAWMWDALKEDYPALA 322 (427)
T ss_pred ccccchhhhhccCCceeeccCccccccccccceeeecccccccccHHHHHHHHHhhhhhhh
Confidence 345677899999999999999999999999999999999998888877665 344454443
No 7
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=95.32 E-value=0.0079 Score=48.87 Aligned_cols=31 Identities=32% Similarity=0.935 Sum_probs=28.8
Q ss_pred ccccCccccccccccccCcC-CcccchhchHH
Q 002348 329 VYCNHCATSIIDLHRSCPKC-SYELCLTCCKE 359 (933)
Q Consensus 329 vyCDnCkTSI~D~HRSC~~C-sYDLCL~CC~E 359 (933)
+.||.|+++|..+...|..| .||||..|...
T Consensus 1 v~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 1 VICDGCQGPIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence 57999999999999999999 79999999874
No 8
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=94.68 E-value=0.014 Score=47.66 Aligned_cols=32 Identities=25% Similarity=0.783 Sum_probs=29.7
Q ss_pred cccCccccccccccccCcCC-cccchhchHHhh
Q 002348 330 YCNHCATSIIDLHRSCPKCS-YELCLTCCKEIC 361 (933)
Q Consensus 330 yCDnCkTSI~D~HRSC~~Cs-YDLCL~CC~ELR 361 (933)
.||.|..+|...+..|..|. ||||..|..+-.
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~ 34 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK 34 (46)
T ss_pred CCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc
Confidence 59999999999999999999 999999998654
No 9
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=94.43 E-value=0.018 Score=47.75 Aligned_cols=32 Identities=28% Similarity=0.896 Sum_probs=29.0
Q ss_pred cccCccccccc-cccccCcC-CcccchhchHHhh
Q 002348 330 YCNHCATSIID-LHRSCPKC-SYELCLTCCKEIC 361 (933)
Q Consensus 330 yCDnCkTSI~D-~HRSC~~C-sYDLCL~CC~ELR 361 (933)
.||+|...|.. ++-.|..| .||||+.|...-.
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~ 35 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPDFDLCLECFSAGA 35 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcC
Confidence 59999999999 99999999 9999999998543
No 10
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=93.96 E-value=0.027 Score=46.41 Aligned_cols=30 Identities=37% Similarity=1.124 Sum_probs=28.0
Q ss_pred ccccCcc-ccccccccccCcC-CcccchhchH
Q 002348 329 VYCNHCA-TSIIDLHRSCPKC-SYELCLTCCK 358 (933)
Q Consensus 329 vyCDnCk-TSI~D~HRSC~~C-sYDLCL~CC~ 358 (933)
+.||.|+ .+|.-....|..| .||||..|..
T Consensus 1 i~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 1 IICDTCRKQGIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCCcccCeEECCCCCCccchHHHhC
Confidence 5799999 7899999999999 7999999988
No 11
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=93.81 E-value=0.038 Score=67.77 Aligned_cols=78 Identities=26% Similarity=0.608 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHhhhhhhHhhcHHhhhhhHhhhhhcccCC-CcccccccccCCCCcccccCccccccccccccCcCCcccc
Q 002348 275 EKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHS-SKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELC 353 (933)
Q Consensus 275 ~kv~~l~YLl~~LLP~LK~i~~EQ~~E~EiEAkIqG~~~-sei~I~~a~~~~DERvyCDnCkTSI~D~HRSC~~CsYDLC 353 (933)
..++.+.|++-.+- -++.+.=+.|.|.-+ ++.+ -.+.... .....|-.||.|-|++|++|+.|++|++.+|
T Consensus 183 ~~~e~~k~il~~~g---d~~c~~~~se~eAl~---~~~~~~~~a~k~--a~~g~~~mC~~C~~tlfn~hw~C~~C~~~~C 254 (889)
T KOG1356|consen 183 LDTETAKYILANLG---DQFCQLVRSEKEALS---MQRPDQKVAWKR--AVKGIREMCDRCETTLFNIHWRCPRCGFGVC 254 (889)
T ss_pred cchHHHHHHhhhcc---chhhhhhhccchhhc---ccCcccccchhh--cccCcchhhhhhcccccceeEEccccCCeee
Confidence 34566777664432 235555555554433 1111 1122222 2466788999999999999999999999999
Q ss_pred hhchHHh
Q 002348 354 LTCCKEI 360 (933)
Q Consensus 354 L~CC~EL 360 (933)
|.|.+.-
T Consensus 255 l~C~r~~ 261 (889)
T KOG1356|consen 255 LDCYRKW 261 (889)
T ss_pred ecchhhc
Confidence 9998765
No 12
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=93.81 E-value=0.032 Score=45.67 Aligned_cols=35 Identities=31% Similarity=0.762 Sum_probs=27.5
Q ss_pred CcccccCccc-cccccccccCcCC-cccchhchHHhh
Q 002348 327 ERVYCNHCAT-SIIDLHRSCPKCS-YELCLTCCKEIC 361 (933)
Q Consensus 327 ERvyCDnCkT-SI~D~HRSC~~Cs-YDLCL~CC~ELR 361 (933)
..+.||.|++ +|.-....|..|. ||||..|..+-+
T Consensus 3 ~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g~ 39 (46)
T PF00569_consen 3 HGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKGR 39 (46)
T ss_dssp SSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH--
T ss_pred CCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhCcC
Confidence 3578999999 9999999999998 999999998754
No 13
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=93.15 E-value=0.045 Score=44.39 Aligned_cols=36 Identities=28% Similarity=0.827 Sum_probs=31.7
Q ss_pred cccccCccccccccccccCcC-CcccchhchHHhhcC
Q 002348 328 RVYCNHCATSIIDLHRSCPKC-SYELCLTCCKEICEG 363 (933)
Q Consensus 328 RvyCDnCkTSI~D~HRSC~~C-sYDLCL~CC~ELR~G 363 (933)
.+.||.|...|......|..| .||||..|..+-+.+
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~~~~ 40 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKGSAG 40 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHhCcCcC
Confidence 467999999999999999999 899999999876544
No 14
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=92.23 E-value=0.061 Score=45.47 Aligned_cols=26 Identities=50% Similarity=0.814 Sum_probs=22.3
Q ss_pred EEEeecCceeEecCCCcccccccccc
Q 002348 841 TFEQKLGEAVFIPAGCPHQVRNLKSC 866 (933)
Q Consensus 841 tf~Q~lGEAVFIPAGCPHQVRNLkSC 866 (933)
++.=..||+++||||++|+++|..+-
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~n~~~~ 63 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVRNPGDE 63 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEEEESSS
T ss_pred EeEccCCEEEEECCCCeEEEEECCCC
Confidence 55557899999999999999998754
No 15
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=91.89 E-value=0.082 Score=43.71 Aligned_cols=31 Identities=29% Similarity=0.834 Sum_probs=28.2
Q ss_pred ccccCccc-cccccccccCcCC-cccchhchHH
Q 002348 329 VYCNHCAT-SIIDLHRSCPKCS-YELCLTCCKE 359 (933)
Q Consensus 329 vyCDnCkT-SI~D~HRSC~~Cs-YDLCL~CC~E 359 (933)
|.||.|.+ +|+-....|..|. ||||..|...
T Consensus 1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 57999985 8999999999998 9999999876
No 16
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=91.84 E-value=0.071 Score=51.26 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=45.1
Q ss_pred CcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCcccccccccc--ceecc
Q 002348 810 EQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSC--TKVAV 871 (933)
Q Consensus 810 ~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSC--IKVAl 871 (933)
....||-++|.+|..+-.-. |.++.=+++=+.||.|+||||.+|-+.|..+. +.+++
T Consensus 57 ~~H~hp~~~~~~~Vl~G~~~-----~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v 115 (131)
T COG1917 57 PWHTHPLGEQTIYVLEGEGT-----VQLEGEKKELKAGDVIIIPPGVVHGLKAVEDEPMVLLLV 115 (131)
T ss_pred ccccCCCcceEEEEEecEEE-----EEecCCceEecCCCEEEECCCCeeeeccCCCCceeEEEE
Confidence 45689989999998876543 55555566668999999999999999999999 55543
No 17
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=91.19 E-value=0.13 Score=57.51 Aligned_cols=43 Identities=37% Similarity=0.560 Sum_probs=40.4
Q ss_pred cceEEEeecCceeEecCCCccccccccccceecccccCccchH
Q 002348 838 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVD 880 (933)
Q Consensus 838 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 880 (933)
+|-...|.+||.||||.|==|=|-||--.|-|+..|+|=||.+
T Consensus 261 kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 261 KPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred CCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 4677899999999999999999999999999999999999965
No 18
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=91.07 E-value=0.11 Score=43.34 Aligned_cols=32 Identities=25% Similarity=0.753 Sum_probs=29.1
Q ss_pred cccCccc-cccccccccCcCC---cccchhchHHhh
Q 002348 330 YCNHCAT-SIIDLHRSCPKCS---YELCLTCCKEIC 361 (933)
Q Consensus 330 yCDnCkT-SI~D~HRSC~~Cs---YDLCL~CC~ELR 361 (933)
-||+|.. +|.-+...|..|. ||||..|...-.
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~ 37 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGE 37 (48)
T ss_pred CCCCCCCCccccceEECCCCCCCCCccCHHHHhCcC
Confidence 4999998 9999999999999 999999988644
No 19
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=90.11 E-value=0.15 Score=42.47 Aligned_cols=33 Identities=30% Similarity=0.796 Sum_probs=29.0
Q ss_pred ccccCccc-cccccccccCcCC-cccchhchHHhh
Q 002348 329 VYCNHCAT-SIIDLHRSCPKCS-YELCLTCCKEIC 361 (933)
Q Consensus 329 vyCDnCkT-SI~D~HRSC~~Cs-YDLCL~CC~ELR 361 (933)
+.||+|.. +|.-++..|..|. ||||+.|...-+
T Consensus 1 ~~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~ 35 (49)
T cd02345 1 LSCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGR 35 (49)
T ss_pred CcCCCCCCCCceEeeEECCCCCCcCchHHHHhCCC
Confidence 46999998 9999999999994 999999998554
No 20
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.51 E-value=0.25 Score=47.98 Aligned_cols=43 Identities=40% Similarity=0.611 Sum_probs=32.5
Q ss_pred ceEEEeecCceeEecCCCccccccccccceecccccCccchHH
Q 002348 839 PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDE 881 (933)
Q Consensus 839 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 881 (933)
.=.++=+.||+|+||||.||.++|.-+.-=+.++=-+|+..++
T Consensus 74 ~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~~~~e 116 (127)
T COG0662 74 GEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPPYLGE 116 (127)
T ss_pred CEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCCcCCC
Confidence 5567778999999999999999999994444444446665543
No 21
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=89.37 E-value=0.18 Score=42.00 Aligned_cols=33 Identities=27% Similarity=0.773 Sum_probs=28.9
Q ss_pred ccccCcc-ccccccccccCcC-CcccchhchHHhh
Q 002348 329 VYCNHCA-TSIIDLHRSCPKC-SYELCLTCCKEIC 361 (933)
Q Consensus 329 vyCDnCk-TSI~D~HRSC~~C-sYDLCL~CC~ELR 361 (933)
+.||.|+ .+|.-....|..| .||||..|...-+
T Consensus 1 i~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~~ 35 (49)
T cd02338 1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGV 35 (49)
T ss_pred CCCCCCcCCCcEEeeEEeCCCCCCccchhHHhCCC
Confidence 5799999 8999999999999 7999999998443
No 22
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=86.14 E-value=0.32 Score=39.40 Aligned_cols=29 Identities=34% Similarity=1.040 Sum_probs=25.6
Q ss_pred cccCccccccccccccCcC-CcccchhchHH
Q 002348 330 YCNHCATSIIDLHRSCPKC-SYELCLTCCKE 359 (933)
Q Consensus 330 yCDnCkTSI~D~HRSC~~C-sYDLCL~CC~E 359 (933)
.||.|.. |.-..+.|..| .||||..|...
T Consensus 2 ~C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 2 TCNECKH-HVETRWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred cCCCCCC-cCCCceECCCCcchhhHHHHhCC
Confidence 4999988 66799999999 89999999876
No 23
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=85.47 E-value=0.42 Score=52.05 Aligned_cols=30 Identities=13% Similarity=0.287 Sum_probs=24.2
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 864 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 864 (933)
|.+..=...=..||+|||||||||+..|.=
T Consensus 213 ~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G 242 (260)
T TIGR03214 213 YNLDNNWVPVEAGDYIWMGAYCPQACYAGG 242 (260)
T ss_pred EEECCEEEEecCCCEEEECCCCCEEEEecC
Confidence 445555666678999999999999999964
No 24
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.50 E-value=1.2 Score=48.24 Aligned_cols=49 Identities=24% Similarity=0.756 Sum_probs=37.7
Q ss_pred ccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 196 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
.+.-.-|-=|--.-.+.++-| |+ ..||-+||++|-.- . .-...||+|.+
T Consensus 44 ~~~~FdCNICLd~akdPVvTl--CG-HLFCWpClyqWl~~--~-~~~~~cPVCK~ 92 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTL--CG-HLFCWPCLYQWLQT--R-PNSKECPVCKA 92 (230)
T ss_pred CCCceeeeeeccccCCCEEee--cc-cceehHHHHHHHhh--c-CCCeeCCcccc
Confidence 456677888988878888877 99 99999999999631 1 23457899976
No 25
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=83.20 E-value=0.85 Score=38.37 Aligned_cols=35 Identities=31% Similarity=0.748 Sum_probs=29.6
Q ss_pred ccccCccc-cccccccccCcC-CcccchhchHHhhcC
Q 002348 329 VYCNHCAT-SIIDLHRSCPKC-SYELCLTCCKEICEG 363 (933)
Q Consensus 329 vyCDnCkT-SI~D~HRSC~~C-sYDLCL~CC~ELR~G 363 (933)
+-||.|+. +|.-+...|..| .||||..|...-+.+
T Consensus 1 ~~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~~~ 37 (49)
T cd02334 1 AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRTS 37 (49)
T ss_pred CCCCCCCCCCceeeeEECCCCCCcCchHHHHhCCCcC
Confidence 46999995 799999999988 499999999876554
No 26
>PHA02926 zinc finger-like protein; Provisional
Probab=82.12 E-value=0.58 Score=50.46 Aligned_cols=54 Identities=24% Similarity=0.671 Sum_probs=35.0
Q ss_pred cCCCCccccccCCCC-ceEec------CcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERK-YVVPC------GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~-~~v~C------~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.....|-=|...-.. +...+ .+|+ ..||..||.+|-..-....+...||.||..
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~ 228 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCN-HIFCITCINIWHRTRRETGASDNCPICRTR 228 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCC-chHHHHHHHHHHHhccccCcCCcCCCCcce
Confidence 334667777754211 11122 2588 899999999998643233566789999974
No 27
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=82.06 E-value=1.1 Score=34.02 Aligned_cols=42 Identities=31% Similarity=0.852 Sum_probs=28.8
Q ss_pred ccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 202 CHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 202 CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
|--|...- ...+.-..|+ ..||..|+..|+.. ....||.|+.
T Consensus 2 C~iC~~~~-~~~~~~~~C~-H~~c~~C~~~~~~~-----~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEF-REPVVLLPCG-HVFCRSCIDKWLKS-----GKNTCPLCRT 43 (45)
T ss_pred CCcCchhh-hCceEecCCC-ChhcHHHHHHHHHh-----CcCCCCCCCC
Confidence 45555443 2234445688 88999999998753 3457999986
No 28
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=81.14 E-value=1.1 Score=45.81 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=41.7
Q ss_pred cCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002348 818 DQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 877 (933)
Q Consensus 818 DQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 877 (933)
++.+|+-.-.- ++-|..=++.-..||.++||||.||..+|..+.-=+++-+++|-
T Consensus 129 ~E~~~Vl~G~~-----~~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~p~ 183 (185)
T PRK09943 129 EEIGTVLEGEI-----VLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTPT 183 (185)
T ss_pred cEEEEEEEeEE-----EEEECCEEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeCCC
Confidence 45555544332 25566777888999999999999999999888766777777774
No 29
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=79.13 E-value=1.3 Score=43.58 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=26.7
Q ss_pred eEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002348 840 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 877 (933)
Q Consensus 840 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 877 (933)
=++.=..||+++||||-||+.+|...|.=++. ++|.
T Consensus 75 ~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~v--~tP~ 110 (125)
T PRK13290 75 EVHPIRPGTMYALDKHDRHYLRAGEDMRLVCV--FNPP 110 (125)
T ss_pred EEEEeCCCeEEEECCCCcEEEEcCCCEEEEEE--ECCC
Confidence 34555789999999999999999855544443 5554
No 30
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.63 E-value=2.5 Score=44.36 Aligned_cols=48 Identities=35% Similarity=0.735 Sum_probs=37.5
Q ss_pred ccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 196 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
+.....|--|.-.....+..=++|+ ..||..||++-- ....+||.|+.
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCG-HvFC~~Cik~al------k~~~~CP~C~k 175 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCG-HVFCSQCIKDAL------KNTNKCPTCRK 175 (187)
T ss_pred cccccCCCceecchhhccccccccc-hhHHHHHHHHHH------HhCCCCCCccc
Confidence 4556889999988776665667899 999999999654 34468999985
No 31
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=77.54 E-value=0.94 Score=33.91 Aligned_cols=27 Identities=26% Similarity=0.806 Sum_probs=12.9
Q ss_pred cccCccccccc-cccccCcCCcccchhc
Q 002348 330 YCNHCATSIID-LHRSCPKCSYELCLTC 356 (933)
Q Consensus 330 yCDnCkTSI~D-~HRSC~~CsYDLCL~C 356 (933)
.|+.|+.+|.. +.-+|+.|.|.|.+.|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 59999999998 8888999999999887
No 32
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=77.17 E-value=1.2 Score=37.52 Aligned_cols=35 Identities=23% Similarity=0.533 Sum_probs=28.0
Q ss_pred ccccCccccccccccccCcCC-cccchhchHHhhcC
Q 002348 329 VYCNHCATSIIDLHRSCPKCS-YELCLTCCKEICEG 363 (933)
Q Consensus 329 vyCDnCkTSI~D~HRSC~~Cs-YDLCL~CC~ELR~G 363 (933)
+.||.|...|.-+.-.|-.|. ||||..|...-++.
T Consensus 1 i~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~g~~~ 36 (48)
T cd02343 1 ISCDGCDEIAPWHRYRCLQCTDMDLCKTCFLGGVKP 36 (48)
T ss_pred CCCCCCCCcCCCceEECCCCCCchhHHHHHhCCccC
Confidence 359999988888877788774 99999998765543
No 33
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=76.99 E-value=1.2 Score=49.25 Aligned_cols=15 Identities=40% Similarity=0.986 Sum_probs=13.7
Q ss_pred ecCceeEecCCCccc
Q 002348 845 KLGEAVFIPAGCPHQ 859 (933)
Q Consensus 845 ~lGEAVFIPAGCPHQ 859 (933)
+.||+||||||.||=
T Consensus 156 ~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 156 KPGDFFYVPSGTPHA 170 (302)
T ss_pred CCCCEEEeCCCCccc
Confidence 479999999999995
No 34
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=76.66 E-value=0.84 Score=36.39 Aligned_cols=29 Identities=41% Similarity=1.035 Sum_probs=21.6
Q ss_pred eEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCC
Q 002348 213 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 249 (933)
Q Consensus 213 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 249 (933)
++... |+ ..||..||..|... ...||.||
T Consensus 16 ~~~l~-C~-H~fh~~Ci~~~~~~------~~~CP~CR 44 (44)
T PF13639_consen 16 VVKLP-CG-HVFHRSCIKEWLKR------NNSCPVCR 44 (44)
T ss_dssp EEEET-TS-EEEEHHHHHHHHHH------SSB-TTTH
T ss_pred EEEcc-CC-CeeCHHHHHHHHHh------CCcCCccC
Confidence 44444 98 99999999999843 24999997
No 35
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=74.69 E-value=1.4 Score=43.63 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=22.9
Q ss_pred EEEeecCceeEecCCCcccccccccc
Q 002348 841 TFEQKLGEAVFIPAGCPHQVRNLKSC 866 (933)
Q Consensus 841 tf~Q~lGEAVFIPAGCPHQVRNLkSC 866 (933)
+.+-.+||...||+|.|||--||.+=
T Consensus 89 ha~~~pGDf~YiPpgVPHqp~N~S~e 114 (142)
T COG4101 89 HAEVGPGDFFYIPPGVPHQPANLSTE 114 (142)
T ss_pred eEEecCCCeEEcCCCCCCcccccCCC
Confidence 56778999999999999999999743
No 36
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=74.30 E-value=1.6 Score=50.48 Aligned_cols=17 Identities=41% Similarity=0.643 Sum_probs=14.9
Q ss_pred EeecCceeEecCCCccc
Q 002348 843 EQKLGEAVFIPAGCPHQ 859 (933)
Q Consensus 843 ~Q~lGEAVFIPAGCPHQ 859 (933)
.=++|||||||||.||=
T Consensus 240 ~l~pGeaifipAg~~HA 256 (389)
T PRK15131 240 KLNPGEAMFLFAETPHA 256 (389)
T ss_pred EeCCCCEEEeCCCCCeE
Confidence 34689999999999996
No 37
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=73.79 E-value=2 Score=43.74 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=19.5
Q ss_pred ecCceeEecCCCcccccccccc
Q 002348 845 KLGEAVFIPAGCPHQVRNLKSC 866 (933)
Q Consensus 845 ~lGEAVFIPAGCPHQVRNLkSC 866 (933)
..||.|+||+|+.|++.|.-+.
T Consensus 107 ~~g~sv~Ip~g~~H~i~n~g~~ 128 (151)
T PF01050_consen 107 KEGDSVYIPRGAKHRIENPGKT 128 (151)
T ss_pred cCCCEEEECCCCEEEEECCCCc
Confidence 5799999999999999997654
No 38
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=73.20 E-value=1.9 Score=35.65 Aligned_cols=32 Identities=22% Similarity=0.607 Sum_probs=27.5
Q ss_pred ccccCcc-ccccccccccCcC-CcccchhchHHh
Q 002348 329 VYCNHCA-TSIIDLHRSCPKC-SYELCLTCCKEI 360 (933)
Q Consensus 329 vyCDnCk-TSI~D~HRSC~~C-sYDLCL~CC~EL 360 (933)
+.||.|. ++|+-.-..|..| .||||-.|..+.
T Consensus 1 I~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~ 34 (43)
T cd02342 1 IQCDGCGVLPITGPRYKSKVKEDYDLCTICFSRM 34 (43)
T ss_pred CCCCCCCCCcccccceEeCCCCCCccHHHHhhhh
Confidence 4699999 5999999999977 699999998764
No 39
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=72.31 E-value=3.7 Score=43.57 Aligned_cols=52 Identities=27% Similarity=0.708 Sum_probs=33.1
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCC--CCchh--------hhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYP--KMSEL--------DVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~--e~~~e--------dv~~~CP~CRg~ 251 (933)
++...|.=|...-...++ +.|+ ..||..||..|.- ..+.+ .-...||.||.-
T Consensus 16 ~~~~~CpICld~~~dPVv--T~CG-H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~ 77 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVV--TLCG-HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77 (193)
T ss_pred CCccCCccCCCcCCCcEE--cCCC-chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCc
Confidence 344567777665444443 5799 9999999999842 11111 123689999983
No 40
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.11 E-value=2.6 Score=46.98 Aligned_cols=48 Identities=27% Similarity=0.829 Sum_probs=37.5
Q ss_pred ccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCcc
Q 002348 196 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 252 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 252 (933)
......|-=|--... --.|+-|+ ..||-.||.-|-.+-++ ||.||--|
T Consensus 236 ~~a~~kC~LCLe~~~--~pSaTpCG-HiFCWsCI~~w~~ek~e------CPlCR~~~ 283 (293)
T KOG0317|consen 236 PEATRKCSLCLENRS--NPSATPCG-HIFCWSCILEWCSEKAE------CPLCREKF 283 (293)
T ss_pred CCCCCceEEEecCCC--CCCcCcCc-chHHHHHHHHHHccccC------CCcccccC
Confidence 355677888887653 34677799 99999999999987654 99999754
No 41
>PHA02929 N1R/p28-like protein; Provisional
Probab=71.87 E-value=2.6 Score=45.95 Aligned_cols=28 Identities=39% Similarity=1.192 Sum_probs=22.9
Q ss_pred CcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 217 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 217 ~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
..|+ ..||..||..|... .-.||.||..
T Consensus 198 ~~C~-H~FC~~CI~~Wl~~------~~tCPlCR~~ 225 (238)
T PHA02929 198 SNCN-HVFCIECIDIWKKE------KNTCPVCRTP 225 (238)
T ss_pred CCCC-CcccHHHHHHHHhc------CCCCCCCCCE
Confidence 4688 89999999999753 3489999974
No 42
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=71.18 E-value=2.6 Score=34.56 Aligned_cols=42 Identities=26% Similarity=0.770 Sum_probs=30.8
Q ss_pred CCccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 200 IKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 200 ~~CHQCrqkt~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
..|.-|...... +.-..|+ -. ||..|+.+++. ....||.||.
T Consensus 3 ~~C~iC~~~~~~--~~~~pCg-H~~~C~~C~~~~~~------~~~~CP~Cr~ 45 (50)
T PF13920_consen 3 EECPICFENPRD--VVLLPCG-HLCFCEECAERLLK------RKKKCPICRQ 45 (50)
T ss_dssp SB-TTTSSSBSS--EEEETTC-EEEEEHHHHHHHHH------TTSBBTTTTB
T ss_pred CCCccCCccCCc--eEEeCCC-ChHHHHHHhHHhcc------cCCCCCcCCh
Confidence 468888877653 3334688 66 99999999985 4568999986
No 43
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=70.97 E-value=2.6 Score=30.69 Aligned_cols=27 Identities=30% Similarity=1.019 Sum_probs=20.7
Q ss_pred cCcCCCCcccHhHHhhhCCCCchhhhhccCCCC
Q 002348 216 CGKCRTKVYCIQCIKQWYPKMSELDVAEICPFC 248 (933)
Q Consensus 216 C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 248 (933)
-..|+ ..||..|+..|+. .....||.|
T Consensus 13 ~~~C~-H~~c~~C~~~~~~-----~~~~~CP~C 39 (39)
T smart00184 13 VLPCG-HTFCRSCIRKWLK-----SGNNTCPIC 39 (39)
T ss_pred EecCC-ChHHHHHHHHHHH-----hCcCCCCCC
Confidence 34588 7899999999975 234579987
No 44
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=69.07 E-value=2.5 Score=47.81 Aligned_cols=19 Identities=53% Similarity=0.903 Sum_probs=16.4
Q ss_pred EEeecCceeEecCCCcccc
Q 002348 842 FEQKLGEAVFIPAGCPHQV 860 (933)
Q Consensus 842 f~Q~lGEAVFIPAGCPHQV 860 (933)
+.=++|||+|||||.||=.
T Consensus 160 v~lkpGe~~fl~Agt~HA~ 178 (312)
T COG1482 160 VKLKPGEAFFLPAGTPHAY 178 (312)
T ss_pred EecCCCCEEEecCCCceee
Confidence 5567899999999999974
No 45
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=68.89 E-value=3.5 Score=43.51 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=31.5
Q ss_pred cceEEEeecCceeEecCCCccccccccccceecccccCccchHH
Q 002348 838 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDE 881 (933)
Q Consensus 838 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 881 (933)
+.+.+.=..||+|+||+|..|++.|.-+.-=+.+- +.|...++
T Consensus 118 ~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~-v~p~~~~~ 160 (191)
T PRK04190 118 EARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLA-CYPADAGH 160 (191)
T ss_pred cEEEEEECCCCEEEECCCCcEEeEECCCCCEEEEE-EEcCCccc
Confidence 37889999999999999999999998654433332 44444443
No 46
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=67.83 E-value=5.4 Score=45.93 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=32.0
Q ss_pred HHHHHHHh-hcCCCEEEEccccccCCC-CCChh-HHHHHHhh
Q 002348 503 LFRFQKHW-IKGEPVIVRNVLDKVTGL-SWEPM-VMWRALCE 541 (933)
Q Consensus 503 l~hFQ~hW-~kGePVIVr~Vl~~~s~l-sW~P~-~mwra~~e 541 (933)
-.+|-+-| .+..|||+|+.+..-.++ .|.+. ++..|++.
T Consensus 33 pl~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~p~Yl~~algd 74 (437)
T KOG2508|consen 33 PLDFYRKFVSTNTPVIIRKALPHWPALKLWSQPDYLLSALGD 74 (437)
T ss_pred hHHHHHhhhcCCCcEEEecccccCchhhccCchHHHHHhccC
Confidence 46788888 789999999999977777 89888 87777654
No 47
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=65.75 E-value=1.5 Score=53.93 Aligned_cols=44 Identities=30% Similarity=0.760 Sum_probs=31.1
Q ss_pred CCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCC
Q 002348 198 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 249 (933)
Q Consensus 198 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 249 (933)
+-.+|--|...-.+ +.=++|+ ..||..|++.||.- -.-+||.|-
T Consensus 642 ~~LkCs~Cn~R~Kd--~vI~kC~-H~FC~~Cvq~r~et-----RqRKCP~Cn 685 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKD--AVITKCG-HVFCEECVQTRYET-----RQRKCPKCN 685 (698)
T ss_pred hceeCCCccCchhh--HHHHhcc-hHHHHHHHHHHHHH-----hcCCCCCCC
Confidence 35678888733232 3335799 99999999999963 345899863
No 48
>PLN02288 mannose-6-phosphate isomerase
Probab=64.80 E-value=3.3 Score=48.15 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=14.0
Q ss_pred ecCceeEecCCCccc
Q 002348 845 KLGEAVFIPAGCPHQ 859 (933)
Q Consensus 845 ~lGEAVFIPAGCPHQ 859 (933)
.+|||||||||.||=
T Consensus 256 ~PGeaifl~ag~~HA 270 (394)
T PLN02288 256 NPGEALYLGANEPHA 270 (394)
T ss_pred CCCCEEEecCCCCce
Confidence 589999999999996
No 49
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.96 E-value=5.7 Score=46.33 Aligned_cols=48 Identities=25% Similarity=0.646 Sum_probs=35.4
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCccc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 253 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~CN 253 (933)
.....|.-|...-...+ -..|+ ..||..||..+.... ..||.|+..+.
T Consensus 24 e~~l~C~IC~d~~~~Pv--itpCg-H~FCs~CI~~~l~~~------~~CP~Cr~~~~ 71 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPV--LTSCS-HTFCSLCIRRCLSNQ------PKCPLCRAEDQ 71 (397)
T ss_pred ccccCCCcCchhhhCcc--CCCCC-CchhHHHHHHHHhCC------CCCCCCCCccc
Confidence 45578999986543333 35799 999999999987642 37999988654
No 50
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=62.89 E-value=3.3 Score=45.97 Aligned_cols=33 Identities=30% Similarity=0.825 Sum_probs=29.5
Q ss_pred cccccCccc-cccccccccCcCC-cccchhchHHh
Q 002348 328 RVYCNHCAT-SIIDLHRSCPKCS-YELCLTCCKEI 360 (933)
Q Consensus 328 RvyCDnCkT-SI~D~HRSC~~Cs-YDLCL~CC~EL 360 (933)
-+-||+|.+ .|+-.-..|.-|. ||||=.|-...
T Consensus 152 ~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~ 186 (278)
T KOG4582|consen 152 SVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN 186 (278)
T ss_pred cccCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence 478999999 9999999999885 99999998765
No 51
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=62.66 E-value=3.9 Score=33.03 Aligned_cols=28 Identities=25% Similarity=0.766 Sum_probs=19.5
Q ss_pred cCCCCcccHhHHhhhCCCCchhhhhccCCCC
Q 002348 218 KCRTKVYCIQCIKQWYPKMSELDVAEICPFC 248 (933)
Q Consensus 218 ~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 248 (933)
.|+ ..||..||.++..+... ..+.||.|
T Consensus 15 ~CG-H~FC~~Cl~~~~~~~~~--~~~~CP~C 42 (42)
T PF15227_consen 15 PCG-HSFCRSCLERLWKEPSG--SGFSCPEC 42 (42)
T ss_dssp SSS-SEEEHHHHHHHHCCSSS--ST---SSS
T ss_pred CCc-CHHHHHHHHHHHHccCC--cCCCCcCC
Confidence 588 99999999999875432 22889987
No 52
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=61.88 E-value=3.9 Score=29.96 Aligned_cols=25 Identities=28% Similarity=0.814 Sum_probs=22.2
Q ss_pred cccccCccccccccccccCcCCccc
Q 002348 328 RVYCNHCATSIIDLHRSCPKCSYEL 352 (933)
Q Consensus 328 RvyCDnCkTSI~D~HRSC~~CsYDL 352 (933)
.++|.+|.+.|-+=.+-|++|+..|
T Consensus 2 ~~~Cp~Cg~~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 2 EMFCPNCGAEIDPDAKFCPNCGAKL 26 (26)
T ss_pred cCCCcccCCcCCcccccChhhCCCC
Confidence 3689999999999999999999765
No 53
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=61.20 E-value=4.4 Score=47.72 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=29.5
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCccch
Q 002348 837 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENV 879 (933)
Q Consensus 837 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV 879 (933)
|..=++.=..||.|+||+|.||+.+|.-+--=+.+--.+|+-+
T Consensus 412 ~dg~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~~~~ 454 (468)
T TIGR01479 412 IGDETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSGSYL 454 (468)
T ss_pred ECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCCCC
Confidence 3344566688999999999999999987643333333445433
No 54
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=61.05 E-value=4.9 Score=29.86 Aligned_cols=23 Identities=26% Similarity=0.959 Sum_probs=21.1
Q ss_pred cccCccccccccccccCcCCccc
Q 002348 330 YCNHCATSIIDLHRSCPKCSYEL 352 (933)
Q Consensus 330 yCDnCkTSI~D~HRSC~~CsYDL 352 (933)
.|..|..-|-.--+.||.|+|++
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 48899999999999999999985
No 55
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=60.77 E-value=6 Score=30.91 Aligned_cols=29 Identities=31% Similarity=0.887 Sum_probs=22.4
Q ss_pred eEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCC
Q 002348 213 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFC 248 (933)
Q Consensus 213 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 248 (933)
.+....|+ ..||..|+.+|... ...||.|
T Consensus 11 ~~~~~~CG-H~fC~~C~~~~~~~------~~~CP~C 39 (39)
T PF13923_consen 11 PVVVTPCG-HSFCKECIEKYLEK------NPKCPVC 39 (39)
T ss_dssp EEEECTTS-EEEEHHHHHHHHHC------TSB-TTT
T ss_pred cCEECCCC-CchhHHHHHHHHHC------cCCCcCC
Confidence 44667899 89999999998753 2689987
No 56
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=59.76 E-value=4.4 Score=29.17 Aligned_cols=23 Identities=39% Similarity=0.969 Sum_probs=20.7
Q ss_pred cccCccccccccccccCcCCccc
Q 002348 330 YCNHCATSIIDLHRSCPKCSYEL 352 (933)
Q Consensus 330 yCDnCkTSI~D~HRSC~~CsYDL 352 (933)
||-+|...|-|=.+-|++|+..|
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCcC
Confidence 69999999999999999998865
No 57
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=59.16 E-value=7.7 Score=38.17 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=26.6
Q ss_pred EEEee----cCceeEecCCCccccccc--cccceeccccc-Cccc
Q 002348 841 TFEQK----LGEAVFIPAGCPHQVRNL--KSCTKVAVDFV-SPEN 878 (933)
Q Consensus 841 tf~Q~----lGEAVFIPAGCPHQVRNL--kSCIKVAlDFV-SPEn 878 (933)
.+.|. .||.++||+|.||=+.|. .+.+.++.=++ +|++
T Consensus 81 ~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~ 125 (144)
T PF00190_consen 81 DFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPN 125 (144)
T ss_dssp EEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTG
T ss_pred eeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCcc
Confidence 45565 999999999999999999 56666655444 3444
No 58
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=58.49 E-value=8.8 Score=30.88 Aligned_cols=42 Identities=24% Similarity=0.752 Sum_probs=28.2
Q ss_pred ccccccCCC-CceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 202 CHQCMKSER-KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 202 CHQCrqkt~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
|-.|.+.-. .....=++|+ -.||..|+.+.. .....||+|+.
T Consensus 2 C~~C~~~~~~~~~~~l~~Cg-H~~C~~C~~~~~------~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCG-HIFCEKCLKKLK------GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccC-CHHHHHHHHhhc------CCCCCCcCCCC
Confidence 445555541 2223334688 899999999888 44568999974
No 59
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=57.35 E-value=5 Score=31.21 Aligned_cols=40 Identities=23% Similarity=0.718 Sum_probs=26.3
Q ss_pred cccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCC
Q 002348 203 HQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFC 248 (933)
Q Consensus 203 HQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 248 (933)
.-|...-.... .=..|+ -.||..||.+|+.. .....||.|
T Consensus 2 ~iC~~~~~~~~-~~~~C~-H~fC~~C~~~~~~~----~~~~~CP~C 41 (41)
T PF00097_consen 2 PICLEPFEDPV-ILLPCG-HSFCRDCLRKWLEN----SGSVKCPLC 41 (41)
T ss_dssp TTTSSBCSSEE-EETTTS-EEEEHHHHHHHHHH----TSSSBTTTT
T ss_pred CcCCccccCCC-EEecCC-CcchHHHHHHHHHh----cCCccCCcC
Confidence 34444433222 345688 89999999999863 344569987
No 60
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=55.47 E-value=8 Score=45.14 Aligned_cols=46 Identities=37% Similarity=0.557 Sum_probs=39.4
Q ss_pred cccchhccccCCCCCCceecCC--CCCcCchhhHHHH-HHHhhcCCCEEEE
Q 002348 472 TDMLCKAASREGSDDNLLYCPD--STKIQEDEELFRF-QKHWIKGEPVIVR 519 (933)
Q Consensus 472 ~~~lrkAA~Re~s~dN~LYcP~--~~di~~~~~l~hF-Q~hW~kGePVIVr 519 (933)
-++|.+||+|. +-.|-||||. ...+.. .+|.+| ++|..+|.-|+|-
T Consensus 158 ~e~lH~aAfRn-gLgnslY~p~~~vg~vss-~eL~~Fa~k~fv~gn~~lvg 206 (429)
T KOG2583|consen 158 IEQLHAAAFRN-GLGNSLYSPGYQVGSVSS-SELKDFAAKHFVKGNAVLVG 206 (429)
T ss_pred HHHHHHHHHhc-ccCCcccCCcccccCccH-HHHHHHHHHHhhccceEEEe
Confidence 46789999998 8999999996 666777 889999 6899999999885
No 62
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=54.82 E-value=5.2 Score=46.85 Aligned_cols=34 Identities=29% Similarity=0.861 Sum_probs=29.8
Q ss_pred CCCcccccCccccccccc-cccCcCC-cccchhchH
Q 002348 325 NDERVYCNHCATSIIDLH-RSCPKCS-YELCLTCCK 358 (933)
Q Consensus 325 ~DERvyCDnCkTSI~D~H-RSC~~Cs-YDLCL~CC~ 358 (933)
..+...||+|..-|-+.- -.|--|. |||||-|..
T Consensus 11 ~g~ky~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs 46 (438)
T KOG0457|consen 11 PGGKYNCDYCSLDITGLIRIKCAECPDFDLCLQCFS 46 (438)
T ss_pred CCCCCCCccHhHHhccceEEEeecCCCcchhHHHHh
Confidence 446778999999999875 7999999 999999985
No 63
>PTZ00194 60S ribosomal protein L26; Provisional
Probab=53.51 E-value=6.3 Score=40.14 Aligned_cols=43 Identities=19% Similarity=0.317 Sum_probs=39.1
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCc
Q 002348 813 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCP 857 (933)
Q Consensus 813 ~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCP 857 (933)
.-|+|...-.+.+.+=+.|+++|||..|.| +-||-|.|=+|=.
T Consensus 18 ~Ap~h~r~k~msa~LSkeLr~k~~~Rs~~I--kkGD~V~Vi~Gk~ 60 (143)
T PTZ00194 18 TAPSHLRRKLMSAPLSKELRAKYNVRSMPV--RKDDEVMVVRGHH 60 (143)
T ss_pred cCcHHHHHHHhcCccCHHHHHHhCCcccee--ecCCEEEEecCCC
Confidence 578999999999999999999999999987 7799999988864
No 64
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=52.96 E-value=8.8 Score=30.84 Aligned_cols=31 Identities=26% Similarity=0.648 Sum_probs=24.1
Q ss_pred ccccccCCCCceEecCcCCCCcccHhHHhhhCCCC
Q 002348 202 CHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKM 236 (933)
Q Consensus 202 CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~ 236 (933)
|+.|++++.-....|..|+ +.||. .-||++.
T Consensus 1 C~~C~~~~~l~~f~C~~C~-~~FC~---~HR~~e~ 31 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCG-NLFCG---EHRLPED 31 (39)
T ss_pred CcccCCcccccCeECCccC-Ccccc---ccCCccc
Confidence 8899999875468899999 88964 5666653
No 65
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=51.83 E-value=8.3 Score=45.93 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=30.3
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceecccccCccchHH
Q 002348 836 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDE 881 (933)
Q Consensus 836 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 881 (933)
.|..=++.=..||.|+||+|.||+.+|.-.=-=+.+--.+|+-++|
T Consensus 420 ~idg~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g~yl~e 465 (478)
T PRK15460 420 TIDGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSGSYLEE 465 (478)
T ss_pred EECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCCCCCC
Confidence 3444455568999999999999999998542222333355554444
No 66
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=51.66 E-value=14 Score=41.52 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=31.1
Q ss_pred eEEEeecCceeEecCCCccccccccccceecccccCccchH
Q 002348 840 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVD 880 (933)
Q Consensus 840 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 880 (933)
..|+=.+||..+||.|++|++.....|+.+++-|..|-...
T Consensus 176 ~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~d 216 (319)
T PF08007_consen 176 EEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWAD 216 (319)
T ss_dssp EEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHH
T ss_pred EEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhh
Confidence 35777899999999999999999999999999999984433
No 67
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=50.84 E-value=2.1 Score=34.93 Aligned_cols=48 Identities=23% Similarity=0.510 Sum_probs=29.2
Q ss_pred CccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCC
Q 002348 201 KCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 249 (933)
Q Consensus 201 ~CHQCrqkt-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 249 (933)
+|+-|++.+ .+.++.|..|+ ..|=..|+...-.........|.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~-~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCN-RWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTS-CEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCC-hhhCcccCCCChhhccCCCCcEECcCCc
Confidence 477888855 57899999999 4343444442222111112379999885
No 68
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=49.31 E-value=9 Score=43.04 Aligned_cols=44 Identities=27% Similarity=0.881 Sum_probs=33.0
Q ss_pred cCCCCccccccCCCCceEecC-cCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 197 LERIKCHQCMKSERKYVVPCG-KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~-~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
..-..||-|.- ...++|- .|+ .-||.-||+++.++-. .||+||-
T Consensus 23 Ds~lrC~IC~~---~i~ip~~TtCg-HtFCslCIR~hL~~qp------~CP~Cr~ 67 (391)
T COG5432 23 DSMLRCRICDC---RISIPCETTCG-HTFCSLCIRRHLGTQP------FCPVCRE 67 (391)
T ss_pred hhHHHhhhhhh---eeecceecccc-cchhHHHHHHHhcCCC------CCccccc
Confidence 34467888853 2456775 499 8999999999988653 5998886
No 69
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=48.31 E-value=14 Score=36.46 Aligned_cols=27 Identities=22% Similarity=0.414 Sum_probs=24.3
Q ss_pred cceEEEeecCceeEecCCCcccccccc
Q 002348 838 EPWTFEQKLGEAVFIPAGCPHQVRNLK 864 (933)
Q Consensus 838 epWtf~Q~lGEAVFIPAGCPHQVRNLk 864 (933)
+-+++.-..||+++||+|-+|+..|.-
T Consensus 73 ~~~~~~l~~GD~~~ip~g~~H~~~n~~ 99 (146)
T smart00835 73 KVYDARLREGDVFVVPQGHPHFQVNSG 99 (146)
T ss_pred eEEEEEecCCCEEEECCCCEEEEEcCC
Confidence 557888899999999999999999974
No 70
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=48.07 E-value=10 Score=39.21 Aligned_cols=41 Identities=32% Similarity=0.456 Sum_probs=24.0
Q ss_pred CccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCcccccccc
Q 002348 819 QCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 864 (933)
Q Consensus 819 Q~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 864 (933)
.+.||...+ ++|.-+|=.|.=..+.-.-||.+++|||.|-.
T Consensus 75 GTl~l~~~~-----~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 75 GTLYLASSH-----EKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp EEEEE--SS-----SSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred eEEEEeccc-----ccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 356776333 26999999999999999999999999999954
No 71
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.01 E-value=28 Score=40.94 Aligned_cols=35 Identities=23% Similarity=0.703 Sum_probs=27.2
Q ss_pred CCCccc--cccC----CCCceEecCcCCCCcccHhHHhhhCC
Q 002348 199 RIKCHQ--CMKS----ERKYVVPCGKCRTKVYCIQCIKQWYP 234 (933)
Q Consensus 199 ~~~CHQ--Crqk----t~~~~v~C~~C~r~~FC~~CL~~rY~ 234 (933)
...|.. |+-- .-..++.|++|+ ..||.-|..+|.|
T Consensus 273 v~yCPr~~Cq~p~~~d~~~~l~~CskCn-FaFCtlCk~t~HG 313 (445)
T KOG1814|consen 273 VVYCPRACCQLPVKQDPGRALAICSKCN-FAFCTLCKLTWHG 313 (445)
T ss_pred cccCChhhccCccccCchhhhhhhccCc-cHHHHHHHHhhcC
Confidence 356665 4433 235689999999 9999999999998
No 72
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.06 E-value=7.1 Score=43.84 Aligned_cols=45 Identities=27% Similarity=0.777 Sum_probs=30.6
Q ss_pred ceEecCcCC-CCcccHhHHhhhCCCCchhhh--------hccCCCCCCcccCccccccC
Q 002348 212 YVVPCGKCR-TKVYCIQCIKQWYPKMSELDV--------AEICPFCRRNCNCSVCLHTS 261 (933)
Q Consensus 212 ~~v~C~~C~-r~~FC~~CL~~rY~e~~~edv--------~~~CP~CRg~CNCs~Clr~~ 261 (933)
.-..|++|- |-.+|..||.+||-.-. ++| .-+||.||. ++|.+.-
T Consensus 316 ~ga~c~nc~crp~wc~~cla~~f~~rq-~~v~r~~~~~~~~~cp~cr~----~fci~dv 369 (381)
T KOG3899|consen 316 IGAPCENCICRPLWCRSCLAQIFIGRQ-DNVYRYEYHRGSAQCPTCRK----NFCIRDV 369 (381)
T ss_pred cCCcccccccccHHHHHHHHHHHhhcc-cchhHHHHHhcCCCCcchhh----ceEEeee
Confidence 345888865 58999999999995432 222 367888887 3565543
No 73
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=46.70 E-value=14 Score=33.16 Aligned_cols=43 Identities=28% Similarity=0.882 Sum_probs=26.5
Q ss_pred CCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCC
Q 002348 200 IKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 249 (933)
Q Consensus 200 ~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 249 (933)
..|--|+.......+.=..|+ ..|-..||.+|..... .||.||
T Consensus 31 ~~~~~~~~~~~~~~i~~~~C~-H~FH~~Ci~~Wl~~~~------~CP~CR 73 (73)
T PF12678_consen 31 DPCPECQAPQDECPIVWGPCG-HIFHFHCISQWLKQNN------TCPLCR 73 (73)
T ss_dssp STTCCHHHCTTTS-EEEETTS-EEEEHHHHHHHHTTSS------B-TTSS
T ss_pred ChhhhhcCCccccceEecccC-CCEEHHHHHHHHhcCC------cCCCCC
Confidence 334444444322223334588 9999999999985432 999997
No 74
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=46.18 E-value=14 Score=42.47 Aligned_cols=83 Identities=22% Similarity=0.332 Sum_probs=46.7
Q ss_pred CcccCCcccCccccCHHH-HHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHHH
Q 002348 810 EQVIHPIHDQCFYLSSEH-KKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKE 888 (933)
Q Consensus 810 ~~v~dPIHDQ~fYLt~eh-k~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteE 888 (933)
....||--+..+|+-.-. +..+-..-| ...++.=..||++|||+|.+|.++|.-+--=+-+-+.+....+.- .|++=
T Consensus 259 ~~H~H~~~~E~~yvl~G~~~~~v~d~~g-~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i-~l~~~ 336 (367)
T TIGR03404 259 ELHWHPNADEWQYFIQGQARMTVFAAGG-NARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADV-SLNQW 336 (367)
T ss_pred CCeeCcCCCeEEEEEEEEEEEEEEecCC-cEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCcee-EHHHH
Confidence 445677666656654332 221111111 356677789999999999999999997643333333333222221 24555
Q ss_pred hhcCCc
Q 002348 889 FRLLPK 894 (933)
Q Consensus 889 fR~Lp~ 894 (933)
+..+|.
T Consensus 337 l~~~p~ 342 (367)
T TIGR03404 337 LALTPP 342 (367)
T ss_pred HhhCCH
Confidence 555554
No 75
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.14 E-value=23 Score=40.31 Aligned_cols=46 Identities=17% Similarity=0.560 Sum_probs=30.5
Q ss_pred CCCccccccCC---CCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 199 RIKCHQCMKSE---RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 199 ~~~CHQCrqkt---~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
..+|-.|.... ...+..=..|+ ..||..|+.+-+..- ...||.|+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CG-H~~C~sCv~~l~~~~-----~~~CP~C~~ 51 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCG-HTLCESCVDLLFVRG-----SGSCPECDT 51 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCC-CcccHHHHHHHhcCC-----CCCCCCCCC
Confidence 35799998753 22111222799 999999999987432 238997764
No 76
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=44.74 E-value=11 Score=31.42 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=27.0
Q ss_pred cccCccccccccccccCcCC-cccchhchHHhhc
Q 002348 330 YCNHCATSIIDLHRSCPKCS-YELCLTCCKEICE 362 (933)
Q Consensus 330 yCDnCkTSI~D~HRSC~~Cs-YDLCL~CC~ELR~ 362 (933)
.||.|..-+...+-+|.++. ||||-.|..+-|-
T Consensus 2 ~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~G~f 35 (45)
T cd02336 2 HCFTCGNDCTRVRYHNLKAKKYDLCPSCYQEGRF 35 (45)
T ss_pred cccCCCCccCceEEEecCCCccccChHHHhCcCC
Confidence 58888888877777788887 9999999988554
No 77
>COG3791 Uncharacterized conserved protein [Function unknown]
Probab=44.48 E-value=5.8 Score=39.31 Aligned_cols=15 Identities=40% Similarity=0.789 Sum_probs=12.3
Q ss_pred cccCccccccCCCcc
Q 002348 251 NCNCSVCLHTSGFIE 265 (933)
Q Consensus 251 ~CNCs~Clr~~g~~~ 265 (933)
+|||+.|+|..|..-
T Consensus 26 ~ChCs~Crk~~G~~~ 40 (133)
T COG3791 26 ACHCSDCRKASGAAF 40 (133)
T ss_pred eeCchHhhhhhCCce
Confidence 899999999966544
No 78
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=43.92 E-value=16 Score=39.98 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=32.2
Q ss_pred CCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccc
Q 002348 814 HPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 814 dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
|+-.++-+|+-.---. .-+..-+++=..||+++||||.||..+|...
T Consensus 77 ~~g~ee~iyVl~G~l~-----v~~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~ 123 (260)
T TIGR03214 77 GEGIETFLFVISGEVN-----VTAEGETHELREGGYAYLPPGSKWTLANAQA 123 (260)
T ss_pred CCceEEEEEEEeCEEE-----EEECCEEEEECCCCEEEECCCCCEEEEECCC
Confidence 3344455665443221 2245667777889999999999999999863
No 79
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=43.24 E-value=7.3 Score=44.19 Aligned_cols=31 Identities=32% Similarity=0.929 Sum_probs=27.1
Q ss_pred cccccCcccccccc-ccccCcC-CcccchhchH
Q 002348 328 RVYCNHCATSIIDL-HRSCPKC-SYELCLTCCK 358 (933)
Q Consensus 328 RvyCDnCkTSI~D~-HRSC~~C-sYDLCL~CC~ 358 (933)
...||.|..-|.|. |-+|..| .|||||-|.-
T Consensus 5 k~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~ 37 (432)
T COG5114 5 KIHCDVCFLDMTDLTFIKCNECPAVDLCLPCFV 37 (432)
T ss_pred eeeehHHHHhhhcceeeeeecccccceehhhhh
Confidence 45799999999986 5689999 9999999984
No 80
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=41.78 E-value=9.1 Score=44.01 Aligned_cols=18 Identities=56% Similarity=0.973 Sum_probs=13.8
Q ss_pred EeecCceeEecCCCcccc
Q 002348 843 EQKLGEAVFIPAGCPHQV 860 (933)
Q Consensus 843 ~Q~lGEAVFIPAGCPHQV 860 (933)
.=.+|||+|+|||.||-.
T Consensus 253 ~L~pGeaifl~a~~~HAY 270 (373)
T PF01238_consen 253 ELQPGEAIFLPAGEPHAY 270 (373)
T ss_dssp EE-TT-EEEEHTTHHEEE
T ss_pred EecCCceEEecCCCcccc
Confidence 335999999999999983
No 81
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=41.62 E-value=13 Score=30.88 Aligned_cols=35 Identities=23% Similarity=0.666 Sum_probs=27.2
Q ss_pred CCCccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002348 199 RIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 234 (933)
Q Consensus 199 ~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~ 234 (933)
...|+.|.++= ..+...|+.|+ ..||..|...+-.
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg-~~~C~~C~~~~~~ 38 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCG-RIFCSKCSSNRIP 38 (57)
T ss_pred cCcCcccCccccCCccccccCcCc-CCcChHHcCCeee
Confidence 35788888644 35578999999 8899999997744
No 82
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=41.49 E-value=13 Score=46.42 Aligned_cols=33 Identities=21% Similarity=0.526 Sum_probs=28.0
Q ss_pred CCCccccccCCCC-------ceEecCcCCCCcccHhHHhhh
Q 002348 199 RIKCHQCMKSERK-------YVVPCGKCRTKVYCIQCIKQW 232 (933)
Q Consensus 199 ~~~CHQCrqkt~~-------~~v~C~~C~r~~FC~~CL~~r 232 (933)
...|+.|.++-.. ++-.|++|+ ..||..|-.++
T Consensus 460 SdtC~~C~kkFfSlsK~L~~RKHHCRkCG-rVFC~~CSSnR 499 (1374)
T PTZ00303 460 SDSCPSCGRAFISLSRPLGTRAHHCRSCG-IRLCVFCITKR 499 (1374)
T ss_pred CCcccCcCCcccccccccccccccccCCc-cccCccccCCc
Confidence 4789999998742 567799999 99999999877
No 83
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=41.13 E-value=13 Score=37.00 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=37.3
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCC
Q 002348 813 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 856 (933)
Q Consensus 813 ~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGC 856 (933)
.-|.|...-.+.+.+=+.|+++|||..|.| +.||-|.|=||-
T Consensus 17 ~a~~~~r~k~msa~LSkeLr~~y~ir~~~I--kkGD~V~VisG~ 58 (120)
T PRK01191 17 NAPLHLRQKLMSAPLSKELREKYGIRSLPV--RKGDTVKVMRGD 58 (120)
T ss_pred cCCHHHHHHHhcCccCHHHHHHhCCccceE--eCCCEEEEeecC
Confidence 467888888899999999999999999977 589999999985
No 84
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=40.46 E-value=9.9 Score=35.44 Aligned_cols=41 Identities=34% Similarity=0.570 Sum_probs=32.0
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCcccccc
Q 002348 812 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRN 862 (933)
Q Consensus 812 v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRN 862 (933)
...||-. ||+++.+++|.+.+|.++ ||+||+=||-.+.|++
T Consensus 53 ~~s~i~k---fl~e~~~~~l~~~~~a~~-------GD~ll~~Ag~~~~v~~ 93 (95)
T PF02938_consen 53 LKSPIAK---FLSEEELKALIERLGAKP-------GDLLLFVAGKKEIVNK 93 (95)
T ss_dssp EECTTCC---CCHHHHHHHHHHHTT--T-------TEEEEEEEESHHHHHH
T ss_pred ccCcccc---cCCHHHHHHHHHHhCCCC-------CCEEEEECCCHHHHHh
Confidence 3445543 599999999999999975 9999999999888764
No 85
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=38.48 E-value=10 Score=32.90 Aligned_cols=38 Identities=29% Similarity=0.574 Sum_probs=23.1
Q ss_pred ccCCCCccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002348 196 ELERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 234 (933)
Q Consensus 196 k~~~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~ 234 (933)
+.....|..|.++= ..+...|+.|+ ..||..|..++..
T Consensus 6 d~~~~~C~~C~~~F~~~~rrhhCr~CG-~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 6 DSEASNCMICGKKFSLFRRRHHCRNCG-RVVCSSCSSQRIP 45 (69)
T ss_dssp GGG-SB-TTT--B-BSSS-EEE-TTT---EEECCCS-EEEE
T ss_pred CCCCCcCcCcCCcCCCceeeEccCCCC-CEECCchhCCEEc
Confidence 46678899999876 46788999999 8999999987764
No 86
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=36.90 E-value=30 Score=40.15 Aligned_cols=43 Identities=9% Similarity=0.015 Sum_probs=33.3
Q ss_pred ccccCCCChhHHHHHhhhHhhhhcccCCCccccccCCCCcccc
Q 002348 114 MSEELDYDAEEIALIRIRERRRSRRLEPDGAMIKTNPHKGRQK 156 (933)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 156 (933)
+-+.++.--++.+..+.++|=+..+.-..++-+.-.-.+++-+
T Consensus 208 ~v~~F~Irlns~~y~~L~~kL~~PI~~~~ni~i~~tl~drF~e 250 (358)
T PF10272_consen 208 GVKPFTIRLNSSEYRDLREKLRAPIRIARNIVIHQTLSDRFVE 250 (358)
T ss_pred CCcceEEEEcHHHHHHHHHHhhCccccCCCceECCCHHHHHHH
Confidence 4466777778889999999999988888888876566666633
No 87
>PRK11171 hypothetical protein; Provisional
Probab=36.41 E-value=20 Score=39.38 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=23.2
Q ss_pred ccceEEEeecCceeEecCCCcccccccc
Q 002348 837 VEPWTFEQKLGEAVFIPAGCPHQVRNLK 864 (933)
Q Consensus 837 VepWtf~Q~lGEAVFIPAGCPHQVRNLk 864 (933)
+..=++.=..||.|+||+|.||+.+|.-
T Consensus 98 ~~g~~~~L~~GDsi~~p~~~~H~~~N~g 125 (266)
T PRK11171 98 LEGKTHALSEGGYAYLPPGSDWTLRNAG 125 (266)
T ss_pred ECCEEEEECCCCEEEECCCCCEEEEECC
Confidence 3344666678999999999999999975
No 88
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=35.05 E-value=26 Score=36.72 Aligned_cols=56 Identities=23% Similarity=0.460 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEe-ecCceeEecCCCcccc
Q 002348 788 PKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQ-KLGEAVFIPAGCPHQV 860 (933)
Q Consensus 788 pKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q-~lGEAVFIPAGCPHQV 860 (933)
+||..|...|..++ ..+-=|-+++-|.|.+.+. +-|-=.+ .-||-|+||||.=|--
T Consensus 80 eKvk~FfEEhlh~d---------eeiR~il~GtgYfDVrd~d--------d~WIRi~vekGDlivlPaGiyHRF 136 (179)
T KOG2107|consen 80 EKVKSFFEEHLHED---------EEIRYILEGTGYFDVRDKD--------DQWIRIFVEKGDLIVLPAGIYHRF 136 (179)
T ss_pred HHHHHHHHHhcCch---------hheEEEeecceEEeeccCC--------CCEEEEEEecCCEEEecCcceeee
Confidence 68888888776654 2345577889999988775 6776554 4699999999998863
No 90
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=35.00 E-value=33 Score=32.40 Aligned_cols=48 Identities=25% Similarity=0.593 Sum_probs=34.4
Q ss_pred CCCCccccccCCCC-ceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 198 ERIKCHQCMKSERK-YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 198 ~~~~CHQCrqkt~~-~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
-...|..|+-.... .++.+ .|+ ..|=+.||.+|-... ..+-.||-||.
T Consensus 31 fdg~Cp~Ck~Pgd~Cplv~g-~C~-H~FH~hCI~kWl~~~---~~~~~CPmCR~ 79 (85)
T PF12861_consen 31 FDGCCPDCKFPGDDCPLVWG-KCS-HNFHMHCILKWLSTQ---SSKGQCPMCRQ 79 (85)
T ss_pred cccCCCCccCCCCCCceeec-cCc-cHHHHHHHHHHHccc---cCCCCCCCcCC
Confidence 33567778776532 34444 499 899999999998742 34679999996
No 91
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=34.48 E-value=37 Score=28.42 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=29.4
Q ss_pred CccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 201 KCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 201 ~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.|--|+.--...++ ..|+ ..||..||..|..+ ...||.|+..
T Consensus 3 ~Cpi~~~~~~~Pv~--~~~G-~v~~~~~i~~~~~~------~~~cP~~~~~ 44 (63)
T smart00504 3 LCPISLEVMKDPVI--LPSG-QTYERRAIEKWLLS------HGTDPVTGQP 44 (63)
T ss_pred CCcCCCCcCCCCEE--CCCC-CEEeHHHHHHHHHH------CCCCCCCcCC
Confidence 45556655444433 4688 89999999999853 4589998763
No 92
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.28 E-value=21 Score=39.72 Aligned_cols=48 Identities=33% Similarity=0.971 Sum_probs=36.6
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhh-hCCCCchhhhhccCCCCCCcc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQ-WYPKMSELDVAEICPFCRRNC 252 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~-rY~e~~~edv~~~CP~CRg~C 252 (933)
.....|-=|--... ...|+-|+ ..||-.||.- |--+-+ ..||.||.-|
T Consensus 213 ~~d~kC~lC~e~~~--~ps~t~Cg-HlFC~~Cl~~~~t~~k~-----~~CplCRak~ 261 (271)
T COG5574 213 LADYKCFLCLEEPE--VPSCTPCG-HLFCLSCLLISWTKKKY-----EFCPLCRAKV 261 (271)
T ss_pred ccccceeeeecccC--Cccccccc-chhhHHHHHHHHHhhcc-----ccCchhhhhc
Confidence 55678999987765 66899999 9999999987 543322 2699999754
No 93
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=34.24 E-value=16 Score=42.08 Aligned_cols=36 Identities=33% Similarity=0.989 Sum_probs=29.4
Q ss_pred CCCCcccccCcccccccccc-ccCcCC-cccchhchHH
Q 002348 324 GNDERVYCNHCATSIIDLHR-SCPKCS-YELCLTCCKE 359 (933)
Q Consensus 324 ~~DERvyCDnCkTSI~D~HR-SC~~Cs-YDLCL~CC~E 359 (933)
+.-|+|-||.|..-=|-|.| -|-.|+ ||||-+|...
T Consensus 4 ~rHe~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen 41 (381)
T KOG1280|consen 4 SRHEGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYEN 41 (381)
T ss_pred CCcCCceeccccccceeeeeeEeeeecchhHHHHHhhc
Confidence 45689999999887777776 488885 9999999864
No 94
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=34.03 E-value=29 Score=36.62 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=38.0
Q ss_pred cceEEEeecCceeEecCCCccccccccccceecccccCccchHH
Q 002348 838 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDE 881 (933)
Q Consensus 838 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 881 (933)
+..++.=+.||..+||+|.||..+.-..||-+.+.=..|+..-.
T Consensus 74 ~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~LviE~~r~~~~~d 117 (177)
T PRK13264 74 KRRDVPIREGEMFLLPPHVPHSPQREAGSIGLVIERKRPEGELD 117 (177)
T ss_pred ceeeEEECCCCEEEeCCCCCcCCccCCCeEEEEEEeCCCCCCcc
Confidence 34678889999999999999999889999999988888886554
No 95
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=33.59 E-value=29 Score=36.02 Aligned_cols=45 Identities=11% Similarity=0.228 Sum_probs=39.6
Q ss_pred cceEEEeecCceeEecCCCccccccccccceecccccCccchHHH
Q 002348 838 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDEC 882 (933)
Q Consensus 838 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC 882 (933)
+..++.=..||..+||+|.||..+--..||=+.+.=..|++...+
T Consensus 68 ~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvIE~~r~~~~~d~ 112 (159)
T TIGR03037 68 KREDVPIREGDIFLLPPHVPHSPQRPAGSIGLVIERKRPQGELDG 112 (159)
T ss_pred cEEEEEECCCCEEEeCCCCCcccccCCCcEEEEEEeCCCCCCCcc
Confidence 356788889999999999999998899999999999999987663
No 96
>PRK04023 DNA polymerase II large subunit; Validated
Probab=33.21 E-value=27 Score=45.07 Aligned_cols=39 Identities=33% Similarity=0.521 Sum_probs=28.2
Q ss_pred ccccCCCCCCcccccccc-----------ccCCCCccccccCCCCceEecCcCC
Q 002348 178 VLKSNSNNNGRCTARNEK-----------ELERIKCHQCMKSERKYVVPCGKCR 220 (933)
Q Consensus 178 ~~~~~~~~~~~~~~r~~k-----------k~~~~~CHQCrqkt~~~~v~C~~C~ 220 (933)
+||-.|+.+|+ +|.-. ....+.|..|.+.+. ...|.+|+
T Consensus 596 ~LFPiG~~GG~--~R~i~~A~~~~g~~eVEVg~RfCpsCG~~t~--~frCP~CG 645 (1121)
T PRK04023 596 VLFPIGNAGGS--TRDINKAAKYKGTIEVEIGRRKCPSCGKETF--YRRCPFCG 645 (1121)
T ss_pred ccccccccCcc--cccHHHHHhcCCceeecccCccCCCCCCcCC--cccCCCCC
Confidence 78888877776 34211 256779999999874 56899998
No 97
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=33.00 E-value=19 Score=41.56 Aligned_cols=24 Identities=38% Similarity=0.419 Sum_probs=14.9
Q ss_pred HhCccceEEEe-ecCceeEecCCCc
Q 002348 834 EFGVEPWTFEQ-KLGEAVFIPAGCP 857 (933)
Q Consensus 834 EyGVepWtf~Q-~lGEAVFIPAGCP 857 (933)
-||.---|=-| -.-||||||||--
T Consensus 289 ~yG~~fttpAlVVEkdaVfIPAGWD 313 (473)
T KOG3905|consen 289 SYGFPFTTPALVVEKDAVFIPAGWD 313 (473)
T ss_pred hcCcccCCcceEeecceeEeccCCC
Confidence 36654333333 3469999999963
No 98
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=32.51 E-value=25 Score=26.52 Aligned_cols=27 Identities=26% Similarity=0.892 Sum_probs=22.5
Q ss_pred cccCcccccccc-ccccCcCCcccchhc
Q 002348 330 YCNHCATSIIDL-HRSCPKCSYELCLTC 356 (933)
Q Consensus 330 yCDnCkTSI~D~-HRSC~~CsYDLCL~C 356 (933)
-|+.|...+-.+ --+|..|.|.|-+.|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCcc
Confidence 388888888888 888899989888876
No 99
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=32.21 E-value=32 Score=38.05 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=27.8
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccc
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCT 867 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCI 867 (933)
|-|.+-++.-.+||+||||+|.||+......|-
T Consensus 59 ~~i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~~ 91 (302)
T PRK10371 59 YLINNEKVQINQGHITLFWACTPHQLTDPGNCR 91 (302)
T ss_pred EEECCEEEEEcCCcEEEEecCCcccccccCCCc
Confidence 667788899999999999999999987655553
No 100
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=30.32 E-value=54 Score=34.58 Aligned_cols=50 Identities=20% Similarity=0.436 Sum_probs=37.2
Q ss_pred Ccccccc----CCCCceEecCcCCCCcccHhHHhhhCCCC------chhhhhccCCCCCCc
Q 002348 201 KCHQCMK----SERKYVVPCGKCRTKVYCIQCIKQWYPKM------SELDVAEICPFCRRN 251 (933)
Q Consensus 201 ~CHQCrq----kt~~~~v~C~~C~r~~FC~~CL~~rY~e~------~~edv~~~CP~CRg~ 251 (933)
+|+.|.. ..++.+|.|+.|. ..|=-.||-.|-.-. ..++..-+|-+|.|+
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs-~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCS-SSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccC-hHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 5889953 2468899999999 888888998886421 234566789998875
No 101
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=30.21 E-value=33 Score=44.63 Aligned_cols=40 Identities=25% Similarity=0.474 Sum_probs=33.0
Q ss_pred ccccCCCCccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002348 194 EKELERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 234 (933)
Q Consensus 194 ~kk~~~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~ 234 (933)
.+.....-|-+|+||. ..+.-.|++|+ +.||+-|+..+.-
T Consensus 552 vpdse~pncm~clqkft~ikrrhhcRacg-kVlcgvccnek~~ 593 (1287)
T KOG1841|consen 552 VPDSEAPNCMDCLQKFTPIKRRHHCRACG-KVLCGVCCNEKSA 593 (1287)
T ss_pred CccccCchHHHHHhhcccccccccchhcc-ceeehhhcchhhh
Confidence 3457778899999998 35667999999 9999999998864
No 102
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.14 E-value=22 Score=40.89 Aligned_cols=31 Identities=35% Similarity=1.186 Sum_probs=24.5
Q ss_pred cCCCCcccHhHHhhhC--CCCchhhhhccCCCCCC
Q 002348 218 KCRTKVYCIQCIKQWY--PKMSELDVAEICPFCRR 250 (933)
Q Consensus 218 ~C~r~~FC~~CL~~rY--~e~~~edv~~~CP~CRg 250 (933)
+|. -.||..||.+|= ... ...+...||.||.
T Consensus 186 nC~-H~~Cl~Cir~wr~~~q~-~~~~sksCP~CRv 218 (344)
T KOG1039|consen 186 NCN-HSFCLNCIRKWRQATQF-ESKTSKSCPFCRV 218 (344)
T ss_pred Ccc-hhhhhcHhHhhhhhhcc-ccccccCCCcccC
Confidence 488 889999999996 322 3357789999997
No 103
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=28.98 E-value=21 Score=45.63 Aligned_cols=32 Identities=25% Similarity=0.993 Sum_probs=24.7
Q ss_pred EecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 214 VPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 214 v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
-+|..|. ..|=+.||++|+.- --.-.||.||-
T Consensus 1489 krC~TCk-nKFH~~CLyKWf~S----s~~s~CPlCRs 1520 (1525)
T COG5219 1489 KRCATCK-NKFHTRCLYKWFAS----SARSNCPLCRS 1520 (1525)
T ss_pred cccchhh-hhhhHHHHHHHHHh----cCCCCCCcccc
Confidence 4677787 77999999999952 33468999984
No 104
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.42 E-value=36 Score=38.73 Aligned_cols=50 Identities=20% Similarity=0.642 Sum_probs=36.6
Q ss_pred cccCCCCccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 195 KELERIKCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 195 kk~~~~~CHQCrqkt-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
..+.|--|--|.-+- +...++-.=|+ ..|=.+|+.+|-. +..-+||+||.
T Consensus 319 ea~~GveCaICms~fiK~d~~~vlPC~-H~FH~~Cv~kW~~-----~y~~~CPvCrt 369 (374)
T COG5540 319 EADKGVECAICMSNFIKNDRLRVLPCD-HRFHVGCVDKWLL-----GYSNKCPVCRT 369 (374)
T ss_pred hcCCCceEEEEhhhhcccceEEEeccC-ceechhHHHHHHh-----hhcccCCccCC
Confidence 457778899998654 23334444588 8999999999965 45569999985
No 105
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=28.24 E-value=34 Score=30.85 Aligned_cols=42 Identities=29% Similarity=0.908 Sum_probs=19.9
Q ss_pred CCCCccccccCCCCceEec-CcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 198 ERIKCHQCMKSERKYVVPC-GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 198 ~~~~CHQCrqkt~~~~v~C-~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
+...|.-|-.--. ...| .+|. ..||..||....+ ..||+|.-
T Consensus 6 ~lLrCs~C~~~l~--~pv~l~~Ce-H~fCs~Ci~~~~~--------~~CPvC~~ 48 (65)
T PF14835_consen 6 ELLRCSICFDILK--EPVCLGGCE-HIFCSSCIRDCIG--------SECPVCHT 48 (65)
T ss_dssp HTTS-SSS-S--S--S-B---SSS---B-TTTGGGGTT--------TB-SSS--
T ss_pred HhcCCcHHHHHhc--CCceeccCc-cHHHHHHhHHhcC--------CCCCCcCC
Confidence 3456777754422 3345 4688 8999999987655 25999964
No 106
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=27.90 E-value=31 Score=30.75 Aligned_cols=17 Identities=41% Similarity=0.714 Sum_probs=12.6
Q ss_pred EEEeecCceeEecCCCc
Q 002348 841 TFEQKLGEAVFIPAGCP 857 (933)
Q Consensus 841 tf~Q~lGEAVFIPAGCP 857 (933)
+..=..||+||||+|..
T Consensus 45 ~~~~~aGD~~~~p~G~~ 61 (74)
T PF05899_consen 45 TVTFKAGDAFFLPKGWT 61 (74)
T ss_dssp EEEEETTEEEEE-TTEE
T ss_pred EEEEcCCcEEEECCCCE
Confidence 34457899999999984
No 107
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=27.82 E-value=30 Score=33.34 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=22.2
Q ss_pred CCCCcccccCccccccc-------cccccCcCCcc
Q 002348 324 GNDERVYCNHCATSIID-------LHRSCPKCSYE 351 (933)
Q Consensus 324 ~~DERvyCDnCkTSI~D-------~HRSC~~CsYD 351 (933)
...--+.|.+|....+. .|+.|++|+|-
T Consensus 17 klpt~f~CP~Cge~~v~v~~~k~~~h~~C~~CG~y 51 (99)
T PRK14892 17 KLPKIFECPRCGKVSISVKIKKNIAIITCGNCGLY 51 (99)
T ss_pred CCCcEeECCCCCCeEeeeecCCCcceEECCCCCCc
Confidence 33456779999977776 79999999983
No 108
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=27.60 E-value=52 Score=38.07 Aligned_cols=28 Identities=21% Similarity=0.532 Sum_probs=23.4
Q ss_pred cceEEEeecCceeEecCCCccccccccc
Q 002348 838 EPWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 838 epWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
+-+++.=..||.++||+|.+|-.+|+..
T Consensus 108 ~~~~~~L~~GD~~~fP~g~~H~~~n~~~ 135 (367)
T TIGR03404 108 RNYIDDVGAGDLWYFPPGIPHSLQGLDE 135 (367)
T ss_pred cEEEeEECCCCEEEECCCCeEEEEECCC
Confidence 3455567899999999999999999854
No 109
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=27.37 E-value=26 Score=31.69 Aligned_cols=13 Identities=31% Similarity=1.275 Sum_probs=9.7
Q ss_pred cccHhHHhhhCCC
Q 002348 223 VYCIQCIKQWYPK 235 (933)
Q Consensus 223 ~FC~~CL~~rY~e 235 (933)
.||..||.+||.+
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999999999964
No 110
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.96 E-value=33 Score=35.14 Aligned_cols=45 Identities=24% Similarity=0.608 Sum_probs=34.7
Q ss_pred ccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCC
Q 002348 196 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 249 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 249 (933)
...-..|.-|...=... ....|+ ..||..||...-. ....||.||
T Consensus 10 ~~~~~~C~iC~~~~~~p--~~l~C~-H~~c~~C~~~~~~------~~~~Cp~cr 54 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP--VLLPCG-HNFCRACLTRSWE------GPLSCPVCR 54 (386)
T ss_pred ccccccChhhHHHhhcC--cccccc-chHhHHHHHHhcC------CCcCCcccC
Confidence 35667888888765543 444588 9999999998876 458999999
No 111
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=26.83 E-value=26 Score=41.91 Aligned_cols=37 Identities=19% Similarity=0.474 Sum_probs=26.3
Q ss_pred cCCCCccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002348 197 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 234 (933)
Q Consensus 197 ~~~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~ 234 (933)
+....|--|+..- ..+.-.|++|+ +.||+.|-..--|
T Consensus 899 ~~a~~cmacq~pf~afrrrhhcrncg-gifcg~cs~asap 937 (990)
T KOG1819|consen 899 EDAEQCMACQMPFNAFRRRHHCRNCG-GIFCGKCSCASAP 937 (990)
T ss_pred CcchhhhhccCcHHHHHHhhhhcccC-ceeecccccCCCC
Confidence 4455666666543 35567899999 9999999776544
No 112
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=26.79 E-value=36 Score=42.23 Aligned_cols=33 Identities=36% Similarity=1.020 Sum_probs=23.2
Q ss_pred CCCcccccCccccccccccccCcCCcc------cchhchHH
Q 002348 325 NDERVYCNHCATSIIDLHRSCPKCSYE------LCLTCCKE 359 (933)
Q Consensus 325 ~DERvyCDnCkTSI~D~HRSC~~CsYD------LCL~CC~E 359 (933)
++.--||.+|.+++. +..|++|+.+ +|-.|=..
T Consensus 12 ~~~akFC~~CG~~l~--~~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 12 PNNNRFCQKCGTSLT--HKPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CCCCccccccCCCCC--CCcCCCCCCCCCcccccccccCCc
Confidence 455568888888874 4678888877 67777444
No 113
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=26.34 E-value=36 Score=33.59 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=39.2
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCcc
Q 002348 813 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPH 858 (933)
Q Consensus 813 ~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPH 858 (933)
.-|+|...-++...+=+.|.++||++.+.| +-||-|-|=+|-=.
T Consensus 13 ~a~~~~r~~~~~a~ls~elr~~y~~r~~~I--kkGD~V~Vi~Gk~K 56 (114)
T TIGR01080 13 TAPLHVRRKLMSAPLSKELREKYGKRALPV--RKGDKVRIMRGDFK 56 (114)
T ss_pred cCcHhhhhheeecccCHHHHHHcCccccee--ecCCEEEEecCCCC
Confidence 568999999999999999999999999966 78999999998643
No 114
>PF12852 Cupin_6: Cupin
Probab=25.96 E-value=39 Score=34.38 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=18.2
Q ss_pred EEeecCceeEecCCCcccccccc
Q 002348 842 FEQKLGEAVFIPAGCPHQVRNLK 864 (933)
Q Consensus 842 f~Q~lGEAVFIPAGCPHQVRNLk 864 (933)
+.=..||.||+|.|.||...--.
T Consensus 57 ~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 57 IRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred EEecCCCEEEEcCCCCeEeCCCC
Confidence 44467999999999999985433
No 115
>PRK11171 hypothetical protein; Provisional
Probab=25.91 E-value=39 Score=37.17 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=26.8
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 864 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 864 (933)
+.+..-++.=..||++++|+++||+.+|.-
T Consensus 218 ~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g 247 (266)
T PRK11171 218 YRLNNDWVEVEAGDFIWMRAYCPQACYAGG 247 (266)
T ss_pred EEECCEEEEeCCCCEEEECCCCCEEEECCC
Confidence 677788888899999999999999999963
No 116
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=25.83 E-value=26 Score=43.89 Aligned_cols=35 Identities=26% Similarity=0.538 Sum_probs=30.6
Q ss_pred cccCcc-ccccccccccCcCC-cccchhchHHhhcCc
Q 002348 330 YCNHCA-TSIIDLHRSCPKCS-YELCLTCCKEICEGR 364 (933)
Q Consensus 330 yCDnCk-TSI~D~HRSC~~Cs-YDLCL~CC~ELR~G~ 364 (933)
-|+.|| -+|+-|--.|-+|. ||||++|+---|.|.
T Consensus 605 kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgraak 641 (966)
T KOG4286|consen 605 KCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRAAK 641 (966)
T ss_pred hcchhhhCccceeeeeehhhcChhHHhhHhhhccccc
Confidence 499997 59999999999995 899999998887764
No 117
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=25.35 E-value=33 Score=33.33 Aligned_cols=24 Identities=25% Similarity=0.758 Sum_probs=18.8
Q ss_pred CcccccCccc--cccccccccCcCCc
Q 002348 327 ERVYCNHCAT--SIIDLHRSCPKCSY 350 (933)
Q Consensus 327 ERvyCDnCkT--SI~D~HRSC~~CsY 350 (933)
-+.+|..|.. ++-+++..||+|+-
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs 94 (113)
T PRK12380 69 AQAWCWDCSQVVEIHQHDAQCPHCHG 94 (113)
T ss_pred cEEEcccCCCEEecCCcCccCcCCCC
Confidence 3779999975 55567788999973
No 118
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.28 E-value=34 Score=41.15 Aligned_cols=51 Identities=27% Similarity=0.817 Sum_probs=35.8
Q ss_pred CCCccccccCCCCceEec-CcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCcccCccccccCCC
Q 002348 199 RIKCHQCMKSERKYVVPC-GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGF 263 (933)
Q Consensus 199 ~~~CHQCrqkt~~~~v~C-~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~CNCs~Clr~~g~ 263 (933)
..-|-=|--... +.+ ++|+ ..||.+||-+... .+ .|++-|.|..|+.+-.+
T Consensus 186 ~~~CPICL~~~~---~p~~t~CG-HiFC~~CiLqy~~-~s---------~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPS---VPVRTNCG-HIFCGPCILQYWN-YS---------AIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCC---cccccccC-ceeeHHHHHHHHh-hh---------cccCCccCCchhhhccc
Confidence 556777766543 222 3599 9999999997653 21 67888999999877543
No 119
>PF08990 Docking: Erythronolide synthase docking; InterPro: IPR015083 The N-terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerise to form amphipathic parallel alpha-helical coiled coils: dimerisation is essential for protein function []. ; GO: 0016740 transferase activity, 0048037 cofactor binding; PDB: 2HG4_E.
Probab=24.79 E-value=55 Score=24.85 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=13.9
Q ss_pred ChhHHHHHHHHHHHhhc
Q 002348 786 DVPKLEAYLRKHFKEFR 802 (933)
Q Consensus 786 DvpKLreyL~kh~~Ef~ 802 (933)
+-+||++||++...|.+
T Consensus 3 ~e~kLr~YLkr~t~eL~ 19 (27)
T PF08990_consen 3 NEDKLRDYLKRVTAELR 19 (27)
T ss_dssp -HCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45799999999988864
No 120
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=24.43 E-value=40 Score=44.55 Aligned_cols=39 Identities=21% Similarity=0.457 Sum_probs=25.8
Q ss_pred ccccCCCCCCccccccccc------------------cCCCCccccccCCCCceEecCcCC
Q 002348 178 VLKSNSNNNGRCTARNEKE------------------LERIKCHQCMKSERKYVVPCGKCR 220 (933)
Q Consensus 178 ~~~~~~~~~~~~~~r~~kk------------------~~~~~CHQCrqkt~~~~v~C~~C~ 220 (933)
+||-.|+.+|+ +|.-.+ .....|.+|...+.. .+|.+|+
T Consensus 630 ~LFPig~aGG~--qR~I~kAa~~a~~~~d~~G~ieVEV~~rkCPkCG~~t~~--~fCP~CG 686 (1337)
T PRK14714 630 TLFPIGEAGGA--QRDVAKAAKHAPDMSDEGGVIEVEVGRRRCPSCGTETYE--NRCPDCG 686 (1337)
T ss_pred ccccccccCcc--cccHHHHHHhhhhccccCCeEEEEEEEEECCCCCCcccc--ccCcccC
Confidence 78888877776 342111 123789999987753 3888888
No 121
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.12 E-value=22 Score=36.17 Aligned_cols=51 Identities=22% Similarity=0.523 Sum_probs=35.0
Q ss_pred cCCCCccccccCCC--CceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 197 LERIKCHQCMKSER--KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 197 ~~~~~CHQCrqkt~--~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
+...+||-|.+.+. +---.|.-|+ .+||.+|--+--. --..+.|.|-.|+.
T Consensus 63 ~ddatC~IC~KTKFADG~GH~C~YCq-~r~CARCGGrv~l--rsNKv~wvcnlc~k 115 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADGCGHNCSYCQ-TRFCARCGGRVSL--RSNKVMWVCNLCRK 115 (169)
T ss_pred CcCcchhhhhhcccccccCcccchhh-hhHHHhcCCeeee--ccCceEEeccCCcH
Confidence 55678999987763 3346788898 8899988543221 11367899888765
No 122
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=23.04 E-value=35 Score=29.75 Aligned_cols=24 Identities=33% Similarity=0.787 Sum_probs=19.9
Q ss_pred CCCCcccccCccccccccccccC----cCCc
Q 002348 324 GNDERVYCNHCATSIIDLHRSCP----KCSY 350 (933)
Q Consensus 324 ~~DERvyCDnCkTSI~D~HRSC~----~CsY 350 (933)
+.|..|.|.-|.|+ |||.|- .|.+
T Consensus 17 ~~dDiVvCp~Cgap---yHR~C~~~~g~C~~ 44 (54)
T PF14446_consen 17 DGDDIVVCPECGAP---YHRDCWEKAGGCIN 44 (54)
T ss_pred CCCCEEECCCCCCc---ccHHHHhhCCceEe
Confidence 47888999999998 899997 5554
No 123
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=23.00 E-value=38 Score=28.31 Aligned_cols=26 Identities=27% Similarity=0.713 Sum_probs=21.3
Q ss_pred CCceEecCcCCCCcccHhHHhhhCCCC
Q 002348 210 RKYVVPCGKCRTKVYCIQCIKQWYPKM 236 (933)
Q Consensus 210 ~~~~v~C~~C~r~~FC~~CL~~rY~e~ 236 (933)
....+.|..|+ ..||..|...|-+.+
T Consensus 37 ~~~~v~C~~C~-~~fC~~C~~~~H~~~ 62 (64)
T smart00647 37 GCNRVTCPKCG-FSFCFRCKVPWHSPV 62 (64)
T ss_pred CCCeeECCCCC-CeECCCCCCcCCCCC
Confidence 34588999999 999999998886554
No 124
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=22.64 E-value=57 Score=29.78 Aligned_cols=46 Identities=24% Similarity=0.404 Sum_probs=28.0
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc--ccceecccccCccchHH
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK--SCTKVAVDFVSPENVDE 881 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLk--SCIKVAlDFVSPEnV~e 881 (933)
+.|..=++.=.+||++|||.|.+|...--. .+....+.| +|+-+.+
T Consensus 36 ~~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~-~~~~~~~ 83 (136)
T PF02311_consen 36 LHIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF-SPDFLEE 83 (136)
T ss_dssp EEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE----GGGG
T ss_pred EEECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE-CHHHHHH
Confidence 345555677789999999999999988777 677666666 5554444
No 125
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=22.52 E-value=55 Score=37.21 Aligned_cols=42 Identities=33% Similarity=0.761 Sum_probs=27.1
Q ss_pred CCccccccCCCCc-eEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCC
Q 002348 200 IKCHQCMKSERKY-VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 249 (933)
Q Consensus 200 ~~CHQCrqkt~~~-~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 249 (933)
..|.-|..--+.. ++.| |+ .-||..||.+..- |..+.||.|-
T Consensus 275 LkCplc~~Llrnp~kT~c--C~-~~fc~eci~~al~-----dsDf~CpnC~ 317 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPC--CG-HTFCDECIGTALL-----DSDFKCPNCS 317 (427)
T ss_pred ccCcchhhhhhCcccCcc--cc-chHHHHHHhhhhh-----hccccCCCcc
Confidence 5666665433221 2233 77 8999999987654 4556899874
No 126
>PF09567 RE_MamI: MamI restriction endonuclease; InterPro: IPR019067 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MamI restriction endonuclease which recognises and cleaves GATNN^NNATC. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=22.35 E-value=37 Score=37.72 Aligned_cols=21 Identities=38% Similarity=1.043 Sum_probs=19.8
Q ss_pred cccCccccccccccccCcCCc
Q 002348 330 YCNHCATSIIDLHRSCPKCSY 350 (933)
Q Consensus 330 yCDnCkTSI~D~HRSC~~CsY 350 (933)
-|+||.+-+.-|.-+||+|+.
T Consensus 84 ~C~~CGa~V~~~e~~Cp~C~S 104 (314)
T PF09567_consen 84 KCNNCGANVSRLEESCPNCGS 104 (314)
T ss_pred hhccccceeeehhhcCCCCCc
Confidence 699999999999999999975
No 127
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=22.13 E-value=20 Score=28.77 Aligned_cols=30 Identities=27% Similarity=0.610 Sum_probs=14.5
Q ss_pred EecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 214 VPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 214 v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
++|++|+ . +-+=|-......-.|.||+|..
T Consensus 3 ~rC~~C~-a------ylNp~~~~~~~~~~w~C~~C~~ 32 (40)
T PF04810_consen 3 VRCRRCR-A------YLNPFCQFDDGGKTWICNFCGT 32 (40)
T ss_dssp -B-TTT---------BS-TTSEEETTTTEEEETTT--
T ss_pred cccCCCC-C------EECCcceEcCCCCEEECcCCCC
Confidence 5788887 2 1222444444446799999964
No 128
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=21.95 E-value=39 Score=39.69 Aligned_cols=43 Identities=28% Similarity=0.927 Sum_probs=30.8
Q ss_pred CCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCC
Q 002348 200 IKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 249 (933)
Q Consensus 200 ~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 249 (933)
..|--|--++.+.++. -|+ ...|..||..|-.. +-.-.||+||
T Consensus 370 eLCKICaendKdvkIE--PCG-HLlCt~CLa~WQ~s----d~gq~CPFCR 412 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIE--PCG-HLLCTSCLAAWQDS----DEGQTCPFCR 412 (563)
T ss_pred HHHHHhhccCCCcccc--ccc-chHHHHHHHhhccc----CCCCCCCcee
Confidence 3477777776644432 488 88999999999743 2256899998
No 129
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.56 E-value=15 Score=35.74 Aligned_cols=45 Identities=22% Similarity=0.473 Sum_probs=0.0
Q ss_pred CCCCccccccCC---CCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCC
Q 002348 198 ERIKCHQCMKSE---RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFC 248 (933)
Q Consensus 198 ~~~~CHQCrqkt---~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 248 (933)
....|.-|.++. .+....|..|. ..+|..|-.. ...+..|.|-+|
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~-~~VC~~C~~~-----~~~~~~WlC~vC 100 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCK-HRVCKKCGVY-----SKKEPIWLCKVC 100 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTT-EEEETTSEEE-----TSSSCCEEEHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCC-ccccCccCCc-----CCCCCCEEChhh
No 130
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=21.27 E-value=71 Score=34.24 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=24.7
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
+.|..=++.=..||+||||+|.+|++..-.+
T Consensus 57 ~~~~~~~~~l~~g~~~ii~~~~~H~~~~~~~ 87 (287)
T TIGR02297 57 LQLDEHEYSEYAPCFFLTPPSVPHGFVTDLD 87 (287)
T ss_pred EEECCEEEEecCCeEEEeCCCCccccccCCC
Confidence 5566666777799999999999999875444
No 131
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=21.26 E-value=18 Score=40.79 Aligned_cols=38 Identities=21% Similarity=0.583 Sum_probs=31.0
Q ss_pred ccCCCCccccccCC---CCceEecCcCCCCcccHhHHhhhCC
Q 002348 196 ELERIKCHQCMKSE---RKYVVPCGKCRTKVYCIQCIKQWYP 234 (933)
Q Consensus 196 k~~~~~CHQCrqkt---~~~~v~C~~C~r~~FC~~CL~~rY~ 234 (933)
+.....|+.|.... ..+.-.|++|+ ..||..|-.++|.
T Consensus 165 D~ea~~C~~C~~~~Ftl~~RRHHCR~CG-~ivC~~Cs~n~~~ 205 (288)
T KOG1729|consen 165 DSEATECMVCGCTEFTLSERRHHCRNCG-DIVCAPCSRNRFL 205 (288)
T ss_pred cccceecccCCCccccHHHHHHHHHhcc-hHhhhhhhcCccc
Confidence 46778999999843 35566799999 8899999999985
No 132
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=21.18 E-value=16 Score=45.40 Aligned_cols=128 Identities=21% Similarity=0.445 Sum_probs=71.3
Q ss_pred CCCCccccccCC---CCceEecCcCCCCcccHhHHhhh-CCCCchhhhhccCCCC-CCcc-cCccccccCCCcccccccC
Q 002348 198 ERIKCHQCMKSE---RKYVVPCGKCRTKVYCIQCIKQW-YPKMSELDVAEICPFC-RRNC-NCSVCLHTSGFIETSKINM 271 (933)
Q Consensus 198 ~~~~CHQCrqkt---~~~~v~C~~C~r~~FC~~CL~~r-Y~e~~~edv~~~CP~C-Rg~C-NCs~Clr~~g~~~t~~~ei 271 (933)
+...|-.||-.+ ...+|+|.+|+ - |.-+. ||=+..-+-.|.|-.| .|+| -|-.|-++.|.+++.+
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn---~---cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~--- 340 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCN---I---CVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTK--- 340 (893)
T ss_pred ccceeceecCCCccccceeEEeccch---h---HHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccC---
Confidence 667899999986 46789999998 2 22222 6632222356999999 4655 3667778888776542
Q ss_pred ChhhhHHHHHHHHHhhhhhhHhhcHHhhhhhHhhhhhcccCCCcccccccccCCCCcccccCccccccccccccCcCCcc
Q 002348 272 TDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYE 351 (933)
Q Consensus 272 s~~~kv~~l~YLl~~LLP~LK~i~~EQ~~E~EiEAkIqG~~~sei~I~~a~~~~DERvyCDnCkTSI~D~HRSC~~CsYD 351 (933)
.+.+.+|..-..-.|- +.-|-..-+|==.+|-++. ..-.-+.|+.|++-.- .|-.|+..
T Consensus 341 ---sgT~wAHvsCALwIPE---Vsie~~ekmePItkfs~Ip-----------esRwslvC~LCk~k~G----ACIqCs~k 399 (893)
T KOG0954|consen 341 ---SGTKWAHVSCALWIPE---VSIECPEKMEPITKFSHIP-----------ESRWSLVCNLCKVKSG----ACIQCSNK 399 (893)
T ss_pred ---CCCeeeEeeeeeccce---eeccCHhhcCcccccCCCc-----------HHHHHHHHHHhcccCc----ceEEeccc
Confidence 1123333322223343 3222211122223344433 2234468999998754 45566655
Q ss_pred cchh
Q 002348 352 LCLT 355 (933)
Q Consensus 352 LCL~ 355 (933)
-|.+
T Consensus 400 ~C~t 403 (893)
T KOG0954|consen 400 TCRT 403 (893)
T ss_pred chhh
Confidence 5554
No 133
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.10 E-value=89 Score=35.30 Aligned_cols=50 Identities=30% Similarity=0.638 Sum_probs=34.9
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCcc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 252 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 252 (933)
+..+.|--|+.--.-..+. ..|+ ..||+-||....- -++...||.|-..|
T Consensus 237 t~~~~C~~Cg~~PtiP~~~-~~C~-HiyCY~Ci~ts~~----~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVI-GKCG-HIYCYYCIATSRL----WDASFTCPLCGENV 286 (298)
T ss_pred cCCceeeccCCCCCCCeee-cccc-ceeehhhhhhhhc----chhhcccCccCCCC
Confidence 4556788888655322221 2388 8999999998763 27788999997654
No 134
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.99 E-value=22 Score=34.03 Aligned_cols=15 Identities=27% Similarity=1.097 Sum_probs=12.8
Q ss_pred cccHhHHhhhCCCCc
Q 002348 223 VYCIQCIKQWYPKMS 237 (933)
Q Consensus 223 ~FC~~CL~~rY~e~~ 237 (933)
.||..||.+||.+-+
T Consensus 42 gFCRNCLs~Wy~eaa 56 (104)
T COG3492 42 GFCRNCLSNWYREAA 56 (104)
T ss_pred HHHHHHHHHHHHHHH
Confidence 699999999997643
No 135
>PRK13503 transcriptional activator RhaS; Provisional
Probab=20.54 E-value=50 Score=35.16 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=22.7
Q ss_pred CccceEEEeecCceeEecCCCccccccccc
Q 002348 836 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 836 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
.|..=++.=..||++|||+|.+|...+...
T Consensus 49 ~i~~~~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 49 VFNGQPYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred EecCCcccccCCcEEEECCCccchhhhccC
Confidence 334444555789999999999999877665
No 136
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.51 E-value=42 Score=39.54 Aligned_cols=101 Identities=20% Similarity=0.509 Sum_probs=62.1
Q ss_pred CCCCcccHhHHhhhCCCCchhhh--hccCCCCCCcccCccccccCCCcccccccCChhhhHHHHHHHHHhhhhhhHhhcH
Q 002348 219 CRTKVYCIQCIKQWYPKMSELDV--AEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICE 296 (933)
Q Consensus 219 C~r~~FC~~CL~~rY~e~~~edv--~~~CP~CRg~CNCs~Clr~~g~~~t~~~eis~~~kv~~l~YLl~~LLP~LK~i~~ 296 (933)
|. ..||-.|++..|--++.+.+ .-+||-|- |. ...+++ .||++=.
T Consensus 205 C~-Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~----C~------~~a~~g----------------------~vKelvg 251 (445)
T KOG1814|consen 205 CS-HVFCKSCLKDYFTIQIQEGQVSCLKCPDPK----CG------SVAPPG----------------------QVKELVG 251 (445)
T ss_pred cc-hHHHHHHHHHHHHHhhhcceeeeecCCCCC----Cc------ccCCch----------------------HHHHHHH
Confidence 66 89999999999976555432 24454431 11 112222 4666655
Q ss_pred HhhhhhHhhhhhcccCCCcccccccccCCCCcccccC--ccccc-c---ccccccCcCCcccchhchHHhhcC
Q 002348 297 EQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNH--CATSI-I---DLHRSCPKCSYELCLTCCKEICEG 363 (933)
Q Consensus 297 EQ~~E~EiEAkIqG~~~sei~I~~a~~~~DERvyCDn--CkTSI-~---D~HRSC~~CsYDLCL~CC~ELR~G 363 (933)
++..++.-+ +-++++.-..+.-+||-+ |.++. - +.---|.+|-|-+|--|= .-+.|
T Consensus 252 ~EL~arYe~----------l~lqk~l~~msdv~yCPr~~Cq~p~~~d~~~~l~~CskCnFaFCtlCk-~t~HG 313 (445)
T KOG1814|consen 252 DELFARYEK----------LMLQKTLELMSDVVYCPRACCQLPVKQDPGRALAICSKCNFAFCTLCK-LTWHG 313 (445)
T ss_pred HHHHHHHHH----------HHHHHHHHhhcccccCChhhccCccccCchhhhhhhccCccHHHHHHH-HhhcC
Confidence 655554322 334455556778899988 88873 2 334469999999998873 33334
No 137
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=20.41 E-value=42 Score=42.35 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=22.1
Q ss_pred ceEecC--cCCCCcccHhHHhhhCCCCchhhhhccCCCCC
Q 002348 212 YVVPCG--KCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 249 (933)
Q Consensus 212 ~~v~C~--~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 249 (933)
..-.|- +|. ..||.-||..|-..+..+.+.-.|+||-
T Consensus 112 s~~i~P~~~~~-~~~CP~Ci~s~~DqL~~~~k~c~H~FC~ 150 (1134)
T KOG0825|consen 112 SSNICPVQTHV-ENQCPNCLKSCNDQLEESEKHTAHYFCE 150 (1134)
T ss_pred ccCcCchhhhh-hhhhhHHHHHHHHHhhccccccccccHH
Confidence 344444 355 6677777777766665555555566653
No 138
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=20.22 E-value=57 Score=35.88 Aligned_cols=75 Identities=19% Similarity=0.085 Sum_probs=52.4
Q ss_pred CceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecC
Q 002348 775 GGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPA 854 (933)
Q Consensus 775 ~GAlWDIFrreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPA 854 (933)
.=.+-|+|-.+|-+.|--- |-.+... ....+-=|||.+|+-...-. +-|.+=++.=.+||.+|||.
T Consensus 142 ~v~~~d~~~~~d~s~m~aG-------f~~~~~~--sf~wtl~~dEi~YVLEGe~~-----l~IdG~t~~l~pGDvlfIPk 207 (233)
T PRK15457 142 CVGLTDLVTGDDGSSMAAG-------FMQWENA--FFPWTLNYDEIDMVLEGELH-----VRHEGETMIAKAGDVMFIPK 207 (233)
T ss_pred cEEeeeeeccCCCCceeeE-------EEEEecC--ccceeccceEEEEEEEeEEE-----EEECCEEEEeCCCcEEEECC
Confidence 4566788888888877221 1111112 23477788998887665443 77888999999999999999
Q ss_pred CCccccccc
Q 002348 855 GCPHQVRNL 863 (933)
Q Consensus 855 GCPHQVRNL 863 (933)
|.+|.-.+-
T Consensus 208 Gs~~hf~tp 216 (233)
T PRK15457 208 GSSIEFGTP 216 (233)
T ss_pred CCeEEecCC
Confidence 999876443
No 139
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=20.13 E-value=66 Score=26.83 Aligned_cols=32 Identities=31% Similarity=0.960 Sum_probs=24.2
Q ss_pred Cccccc--Cccccccc------cccccCcCCcccchhchH
Q 002348 327 ERVYCN--HCATSIID------LHRSCPKCSYELCLTCCK 358 (933)
Q Consensus 327 ERvyCD--nCkTSI~D------~HRSC~~CsYDLCL~CC~ 358 (933)
...+|- .|...|.- .+-.|++|.+.+|..|=.
T Consensus 17 ~~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~ 56 (64)
T smart00647 17 DLKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKV 56 (64)
T ss_pred CccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCC
Confidence 455787 78666544 478899999999999943
No 140
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.03 E-value=49 Score=38.37 Aligned_cols=59 Identities=20% Similarity=0.484 Sum_probs=37.9
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCcccCccccccCC
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSG 262 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~CNCs~Clr~~g 262 (933)
....+|--|.--=.. .+.=..|. .+||..||.+-+- .-...||-||..|--+.=||.+.
T Consensus 41 ~~~v~c~icl~llk~-tmttkeCl-hrfc~~ci~~a~r-----~gn~ecptcRk~l~SkrsLr~Dp 99 (381)
T KOG0311|consen 41 DIQVICPICLSLLKK-TMTTKECL-HRFCFDCIWKALR-----SGNNECPTCRKKLVSKRSLRIDP 99 (381)
T ss_pred hhhhccHHHHHHHHh-hcccHHHH-HHHHHHHHHHHHH-----hcCCCCchHHhhccccccCCCCc
Confidence 345677777632211 11223588 9999999987653 22358999999887776666653
Done!