Query 002348
Match_columns 933
No_of_seqs 216 out of 300
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 22:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ypd_A Probable JMJC domain-co 100.0 3E-129 9E-134 1062.4 15.8 353 494-918 15-370 (392)
2 4gjz_A Lysine-specific demethy 99.2 1.5E-11 5E-16 123.3 6.0 36 836-871 197-232 (235)
3 3k2o_A Bifunctional arginine d 99.1 4.2E-10 1.4E-14 123.1 12.7 53 836-888 252-304 (336)
4 3al5_A HTYW5, JMJC domain-cont 98.9 4.8E-09 1.6E-13 114.1 10.5 42 837-878 237-278 (338)
5 3k3o_A PHF8, PHD finger protei 98.8 3.1E-08 1E-12 109.8 14.8 79 836-920 213-295 (371)
6 2yu1_A JMJC domain-containing 98.8 2.5E-08 8.5E-13 113.0 14.3 53 835-887 261-313 (451)
7 3kv4_A PHD finger protein 8; e 98.8 1.5E-08 5.1E-13 114.7 10.6 79 837-920 298-379 (447)
8 3kv5_D JMJC domain-containing 98.7 2.5E-08 8.5E-13 114.0 10.7 51 837-887 333-383 (488)
9 3kv9_A JMJC domain-containing 98.7 7.6E-08 2.6E-12 107.5 13.6 52 836-887 241-292 (397)
10 3d8c_A Hypoxia-inducible facto 98.7 4.5E-09 1.5E-13 115.0 3.7 40 836-875 257-297 (349)
11 3pua_A GRC5, PHD finger protei 98.6 2E-07 6.8E-12 104.0 12.7 79 836-920 240-322 (392)
12 3pur_A Lysine-specific demethy 97.3 0.00011 3.9E-09 84.5 4.9 51 837-887 363-413 (528)
13 2xxz_A Lysine-specific demethy 97.2 0.0004 1.4E-08 76.2 6.5 87 774-879 232-318 (332)
14 3avr_A Lysine-specific demethy 97.1 0.00053 1.8E-08 79.2 6.5 89 774-881 291-379 (531)
15 4ask_A Lysine-specific demethy 96.5 0.0026 8.8E-08 73.0 6.2 87 774-879 266-352 (510)
16 3dxt_A JMJC domain-containing 96.0 0.0078 2.7E-07 66.6 6.5 94 777-881 210-303 (354)
17 3opt_A DNA damage-responsive t 95.0 0.029 9.8E-07 62.5 6.8 93 777-880 253-345 (373)
18 2ox0_A JMJC domain-containing 94.7 0.047 1.6E-06 61.1 7.3 95 776-881 227-321 (381)
19 2ysl_A Tripartite motif-contai 92.0 0.24 8.1E-06 41.3 5.7 49 197-251 18-66 (73)
20 1vrb_A Putative asparaginyl hy 91.9 0.11 3.7E-06 56.9 4.3 36 837-872 215-252 (342)
21 2d8t_A Dactylidin, ring finger 91.5 0.22 7.4E-06 41.7 4.9 46 197-251 13-58 (71)
22 1x4j_A Ring finger protein 38; 91.0 0.18 6.3E-06 42.6 4.0 47 197-250 21-68 (75)
23 2opk_A Hypothetical protein; p 90.9 0.07 2.4E-06 48.7 1.4 24 842-865 75-98 (112)
24 2ecw_A Tripartite motif-contai 90.6 0.24 8.3E-06 41.9 4.5 53 197-252 17-69 (85)
25 1yhf_A Hypothetical protein SP 90.6 0.12 4.1E-06 46.0 2.6 58 813-877 57-114 (115)
26 2csy_A Zinc finger protein 183 90.5 0.18 6.2E-06 43.2 3.6 48 197-253 13-60 (81)
27 4ayc_A E3 ubiquitin-protein li 90.2 0.34 1.2E-05 45.9 5.5 43 200-251 54-96 (138)
28 2pfw_A Cupin 2, conserved barr 90.2 0.097 3.3E-06 46.7 1.7 58 812-877 50-107 (116)
29 3ht1_A REMF protein; cupin fol 90.0 0.16 5.6E-06 46.7 3.1 41 837-877 76-116 (145)
30 3lag_A Uncharacterized protein 89.8 0.11 3.7E-06 46.8 1.6 24 842-865 61-84 (98)
31 3fjs_A Uncharacterized protein 89.8 0.13 4.5E-06 46.9 2.2 42 835-877 69-110 (114)
32 2b8m_A Hypothetical protein MJ 89.7 0.18 6E-06 45.4 3.0 36 843-878 69-106 (117)
33 3h8u_A Uncharacterized conserv 89.5 0.17 5.7E-06 45.9 2.6 37 841-877 80-116 (125)
34 2q30_A Uncharacterized protein 89.5 0.11 3.7E-06 45.6 1.3 36 839-876 73-108 (110)
35 2fc7_A ZZZ3 protein; structure 89.2 0.2 6.8E-06 44.8 2.9 37 326-362 19-60 (82)
36 1iym_A EL5; ring-H2 finger, ub 89.2 0.34 1.2E-05 38.2 4.0 46 198-250 4-51 (55)
37 3lrq_A E3 ubiquitin-protein li 89.1 0.16 5.6E-06 45.6 2.3 49 197-252 20-68 (100)
38 1v70_A Probable antibiotics sy 89.0 0.17 5.9E-06 43.3 2.3 37 840-876 67-103 (105)
39 4e2g_A Cupin 2 conserved barre 88.7 0.33 1.1E-05 43.9 4.1 59 812-877 57-115 (126)
40 2kiz_A E3 ubiquitin-protein li 88.5 0.32 1.1E-05 40.2 3.5 48 196-250 11-59 (69)
41 2ecm_A Ring finger and CHY zin 88.5 0.21 7.1E-06 39.3 2.2 46 198-250 4-51 (55)
42 2ozj_A Cupin 2, conserved barr 87.9 0.19 6.4E-06 45.0 1.8 36 835-870 71-106 (114)
43 1juh_A Quercetin 2,3-dioxygena 87.9 0.2 7E-06 54.6 2.4 40 841-881 292-332 (350)
44 2fqp_A Hypothetical protein BP 87.8 0.24 8.2E-06 43.5 2.4 25 841-865 60-84 (97)
45 2ecv_A Tripartite motif-contai 87.8 0.26 8.8E-06 41.8 2.5 54 197-253 17-70 (85)
46 2xlg_A SLL1785 protein, CUCA; 87.7 0.32 1.1E-05 50.8 3.8 76 812-890 59-163 (239)
47 1tot_A CREB-binding protein; z 87.6 0.17 5.7E-06 41.7 1.1 33 328-361 6-39 (52)
48 3d82_A Cupin 2, conserved barr 87.5 0.27 9.1E-06 42.5 2.5 28 841-868 69-96 (102)
49 2ecj_A Tripartite motif-contai 87.5 0.72 2.5E-05 36.5 4.9 45 198-248 14-58 (58)
50 2dip_A Zinc finger SWIM domain 87.1 0.21 7.1E-06 46.1 1.6 37 325-361 28-66 (98)
51 2ecy_A TNF receptor-associated 87.0 0.26 8.8E-06 40.6 2.0 46 198-251 14-59 (66)
52 2gu9_A Tetracenomycin polyketi 86.8 0.34 1.2E-05 42.3 2.9 40 838-877 60-99 (113)
53 2y43_A E3 ubiquitin-protein li 86.8 0.76 2.6E-05 40.7 5.1 46 198-251 21-66 (99)
54 2e5r_A Dystrobrevin alpha; ZZ 86.8 0.25 8.7E-06 42.0 1.9 34 329-362 12-47 (63)
55 1o5u_A Novel thermotoga mariti 86.7 0.22 7.4E-06 45.3 1.5 31 839-869 67-97 (101)
56 3kgz_A Cupin 2 conserved barre 86.5 0.39 1.3E-05 46.8 3.3 41 837-877 79-119 (156)
57 3ibm_A Cupin 2, conserved barr 86.4 0.34 1.2E-05 47.4 2.8 60 812-877 72-132 (167)
58 2djb_A Polycomb group ring fin 86.4 0.44 1.5E-05 40.0 3.1 47 197-251 13-59 (72)
59 2ect_A Ring finger protein 126 85.7 0.71 2.4E-05 39.0 4.1 48 197-251 13-61 (78)
60 3h7j_A Bacilysin biosynthesis 85.3 0.3 1E-05 50.2 1.9 59 813-877 163-221 (243)
61 2ysj_A Tripartite motif-contai 85.0 0.8 2.7E-05 37.2 4.0 46 197-248 18-63 (63)
62 2egp_A Tripartite motif-contai 84.8 0.37 1.3E-05 40.6 2.0 53 197-252 10-63 (79)
63 2yur_A Retinoblastoma-binding 84.7 0.55 1.9E-05 39.7 3.0 48 197-250 13-60 (74)
64 2ckl_A Polycomb group ring fin 84.6 1.3 4.6E-05 39.8 5.7 47 197-251 13-59 (108)
65 2ozi_A Hypothetical protein RP 84.5 0.29 1E-05 44.2 1.2 23 843-865 62-84 (98)
66 2l0b_A E3 ubiquitin-protein li 84.1 0.57 1.9E-05 41.3 2.9 48 197-251 38-86 (91)
67 2lv9_A Histone-lysine N-methyl 84.0 0.64 2.2E-05 42.5 3.3 48 197-249 26-74 (98)
68 1chc_A Equine herpes virus-1 r 84.0 0.77 2.6E-05 37.7 3.5 47 198-252 4-50 (68)
69 2i45_A Hypothetical protein; n 83.9 0.49 1.7E-05 41.8 2.5 38 840-880 67-104 (107)
70 1y9q_A Transcriptional regulat 83.8 0.36 1.2E-05 47.3 1.6 43 835-878 139-181 (192)
71 1weu_A Inhibitor of growth fam 83.7 1.9 6.6E-05 39.3 6.2 49 196-250 33-84 (91)
72 1lr5_A Auxin binding protein 1 83.3 0.43 1.5E-05 45.7 1.9 25 840-864 88-112 (163)
73 2ep4_A Ring finger protein 24; 83.2 1.1 3.6E-05 37.5 4.1 47 197-250 13-60 (74)
74 2oa2_A BH2720 protein; 1017534 82.6 0.66 2.3E-05 43.9 2.9 25 841-865 89-113 (148)
75 3knv_A TNF receptor-associated 82.6 0.26 8.9E-06 47.4 0.1 47 197-251 29-75 (141)
76 3l2h_A Putative sugar phosphat 82.3 0.69 2.4E-05 44.1 2.9 41 837-877 83-124 (162)
77 3l11_A E3 ubiquitin-protein li 82.1 0.83 2.8E-05 41.6 3.2 46 198-251 14-59 (115)
78 3cew_A Uncharacterized cupin p 82.1 0.55 1.9E-05 42.7 2.1 29 837-865 63-91 (125)
79 3jzv_A Uncharacterized protein 81.7 0.58 2E-05 46.1 2.2 30 836-865 87-116 (166)
80 1t1h_A Gspef-atpub14, armadill 81.5 1.1 3.9E-05 37.7 3.7 47 197-251 6-52 (78)
81 3fl2_A E3 ubiquitin-protein li 81.3 0.65 2.2E-05 42.9 2.3 47 198-252 51-97 (124)
82 4ic3_A E3 ubiquitin-protein li 81.3 1.1 3.8E-05 38.1 3.6 42 197-251 22-64 (74)
83 1vj2_A Novel manganese-contain 81.2 0.63 2.2E-05 42.7 2.1 29 837-865 83-111 (126)
84 4axo_A EUTQ, ethanolamine util 80.9 0.71 2.4E-05 45.4 2.5 60 814-880 81-140 (151)
85 1jm7_A BRCA1, breast cancer ty 80.8 0.69 2.4E-05 41.5 2.2 47 199-251 21-67 (112)
86 3ql9_A Transcriptional regulat 80.8 0.89 3.1E-05 43.9 3.1 52 196-250 54-110 (129)
87 2ckl_B Ubiquitin ligase protei 80.6 0.82 2.8E-05 44.3 2.8 48 198-252 53-100 (165)
88 2ecn_A Ring finger protein 141 80.3 0.59 2E-05 38.7 1.5 44 197-250 13-56 (70)
89 2lri_C Autoimmune regulator; Z 80.2 1.4 4.9E-05 37.7 3.9 50 196-250 9-58 (66)
90 1x82_A Glucose-6-phosphate iso 80.0 0.87 3E-05 45.4 2.9 40 838-877 117-156 (190)
91 2o8q_A Hypothetical protein; c 79.8 0.91 3.1E-05 41.6 2.7 60 813-878 60-120 (134)
92 2ecl_A Ring-box protein 2; RNF 79.8 2.6 8.8E-05 36.5 5.4 30 215-251 44-73 (81)
93 3ng2_A RNF4, snurf, ring finge 79.6 0.48 1.6E-05 39.1 0.7 50 196-252 7-61 (71)
94 1jm7_B BARD1, BRCA1-associated 79.5 2.3 7.8E-05 39.0 5.3 45 197-251 20-64 (117)
95 2xeu_A Ring finger protein 4; 79.5 0.39 1.4E-05 38.6 0.1 46 199-251 3-53 (64)
96 2ea6_A Ring finger protein 4; 79.4 0.54 1.8E-05 38.4 0.9 47 198-251 14-65 (69)
97 1z6u_A NP95-like ring finger p 79.3 0.84 2.9E-05 44.2 2.4 48 198-253 77-124 (150)
98 3lwc_A Uncharacterized protein 79.2 0.88 3E-05 42.3 2.4 37 839-877 76-113 (119)
99 1wfl_A Zinc finger protein 216 78.1 1.8 6.1E-05 38.4 3.8 36 196-236 22-57 (74)
100 4i4a_A Similar to unknown prot 78.0 1.9 6.6E-05 38.9 4.3 56 835-894 67-124 (128)
101 1wfp_A Zinc finger (AN1-like) 77.9 2.3 7.9E-05 37.6 4.5 36 196-236 22-57 (74)
102 2ct2_A Tripartite motif protei 77.9 0.96 3.3E-05 38.7 2.1 52 197-252 13-66 (88)
103 3bcw_A Uncharacterized protein 77.7 0.83 2.8E-05 43.0 1.8 30 842-871 89-118 (123)
104 1g25_A CDK-activating kinase a 77.7 1.3 4.5E-05 36.2 2.8 46 200-251 4-52 (65)
105 2bnm_A Epoxidase; oxidoreducta 77.3 0.99 3.4E-05 44.1 2.3 45 813-863 137-185 (198)
106 2lbm_A Transcriptional regulat 77.2 1.3 4.4E-05 43.5 3.0 52 195-249 59-115 (142)
107 3rns_A Cupin 2 conserved barre 77.2 0.89 3E-05 46.3 2.0 48 813-866 170-218 (227)
108 1y3t_A Hypothetical protein YX 76.4 1.1 3.8E-05 47.2 2.5 50 835-885 252-301 (337)
109 1qwr_A Mannose-6-phosphate iso 76.1 0.9 3.1E-05 49.3 1.7 17 844-860 162-178 (319)
110 3a1b_A DNA (cytosine-5)-methyl 76.0 2 6.9E-05 42.9 4.0 52 196-250 76-133 (159)
111 1fi2_A Oxalate oxidase, germin 75.7 1.7 6E-05 43.4 3.6 39 840-878 119-157 (201)
112 3i7d_A Sugar phosphate isomera 75.7 1.6 5.4E-05 42.4 3.2 42 836-877 79-122 (163)
113 4h7l_A Uncharacterized protein 75.3 0.45 1.5E-05 47.3 -0.8 46 812-862 61-108 (157)
114 1zx5_A Mannosephosphate isomer 75.3 0.97 3.3E-05 48.7 1.7 18 843-860 161-178 (300)
115 1wil_A KIAA1045 protein; ring 74.9 2.4 8.2E-05 38.5 3.8 54 196-250 12-75 (89)
116 2f4p_A Hypothetical protein TM 74.5 1.7 5.8E-05 41.3 3.0 35 842-876 89-123 (147)
117 3o36_A Transcription intermedi 74.4 4.6 0.00016 40.1 6.2 49 198-251 3-51 (184)
118 3ztg_A E3 ubiquitin-protein li 73.0 1.5 5.1E-05 38.2 2.1 49 197-251 11-59 (92)
119 1o4t_A Putative oxalate decarb 71.8 1.4 4.7E-05 41.0 1.6 31 835-865 91-121 (133)
120 1v87_A Deltex protein 2; ring- 71.6 1.4 4.8E-05 39.9 1.6 38 213-252 55-92 (114)
121 1rmd_A RAG1; V(D)J recombinati 71.5 1.6 5.5E-05 39.8 2.0 46 198-251 22-67 (116)
122 2pv0_B DNA (cytosine-5)-methyl 71.1 3.4 0.00012 46.4 4.8 52 196-250 90-147 (386)
123 4ap4_A E3 ubiquitin ligase RNF 70.8 2.7 9.2E-05 38.2 3.3 49 196-251 69-122 (133)
124 2vqa_A SLL1358 protein, MNCA; 70.4 1.4 4.9E-05 47.2 1.6 55 841-896 279-333 (361)
125 3rns_A Cupin 2 conserved barre 70.3 1.5 5.1E-05 44.6 1.6 55 811-871 52-106 (227)
126 2wfp_A Mannose-6-phosphate iso 70.0 1.5 5.2E-05 49.0 1.7 15 845-859 245-259 (394)
127 1e4u_A Transcriptional repress 70.0 2.4 8.2E-05 37.0 2.6 50 197-253 9-61 (78)
128 1rc6_A Hypothetical protein YL 69.9 1.4 4.7E-05 45.7 1.3 47 814-865 197-243 (261)
129 2l5u_A Chromodomain-helicase-D 69.8 2.9 0.0001 34.9 3.0 50 196-250 8-57 (61)
130 3u5n_A E3 ubiquitin-protein li 69.8 4.2 0.00015 41.2 4.8 51 196-251 4-54 (207)
131 2pyt_A Ethanolamine utilizatio 68.9 2.3 7.8E-05 40.3 2.5 35 837-871 90-124 (133)
132 3hct_A TNF receptor-associated 68.8 1.6 5.3E-05 40.2 1.3 45 198-250 17-61 (118)
133 1y3t_A Hypothetical protein YX 68.8 2 7E-05 45.2 2.3 48 835-883 80-127 (337)
134 2yql_A PHD finger protein 21A; 68.6 1 3.5E-05 36.9 0.0 50 196-250 6-55 (56)
135 3h7j_A Bacilysin biosynthesis 67.9 2.1 7.1E-05 43.9 2.1 47 813-865 51-98 (243)
136 1pmi_A PMI, phosphomannose iso 67.7 1.8 6.2E-05 49.2 1.7 16 844-859 270-285 (440)
137 1wfk_A Zinc finger, FYVE domai 67.3 2.3 7.8E-05 38.2 2.0 36 197-233 7-44 (88)
138 2ecg_A Baculoviral IAP repeat- 67.3 4 0.00014 34.6 3.4 42 197-251 23-65 (75)
139 1juh_A Quercetin 2,3-dioxygena 66.7 1.9 6.7E-05 46.9 1.7 70 812-887 66-140 (350)
140 1sef_A Conserved hypothetical 66.7 2 6.9E-05 44.9 1.7 31 835-865 216-246 (274)
141 1bor_A Transcription factor PM 66.5 2.5 8.7E-05 34.0 1.9 43 197-251 4-46 (56)
142 2ea5_A Cell growth regulator w 66.1 6.7 0.00023 33.1 4.6 43 197-251 13-55 (68)
143 4e2q_A Ureidoglycine aminohydr 65.5 2.1 7.1E-05 45.7 1.6 29 835-863 220-248 (266)
144 2yho_A E3 ubiquitin-protein li 65.3 4.7 0.00016 34.9 3.6 41 198-251 17-58 (79)
145 1j58_A YVRK protein; cupin, de 65.0 2.2 7.4E-05 46.4 1.7 27 839-865 300-326 (385)
146 2vpv_A Protein MIF2, MIF2P; nu 65.0 3 0.0001 41.6 2.5 29 837-865 125-153 (166)
147 4diq_A Lysine-specific demethy 64.6 3.8 0.00013 47.3 3.6 42 835-876 223-266 (489)
148 2d40_A Z3393, putative gentisa 64.3 3.3 0.00011 45.4 2.9 40 837-876 136-175 (354)
149 4ap4_A E3 ubiquitin ligase RNF 64.2 3.3 0.00011 37.6 2.5 46 199-251 7-57 (133)
150 1f62_A Transcription factor WS 64.0 5.7 0.00019 31.6 3.5 47 201-250 2-49 (51)
151 2y1n_A E3 ubiquitin-protein li 63.8 2.6 8.7E-05 47.4 2.0 46 199-252 332-377 (389)
152 2xdv_A MYC-induced nuclear ant 63.4 4 0.00014 46.4 3.5 30 835-864 194-223 (442)
153 2vje_A E3 ubiquitin-protein li 62.8 3.3 0.00011 34.4 2.0 49 197-251 6-54 (64)
154 1mm2_A MI2-beta; PHD, zinc fin 62.0 3.3 0.00011 34.6 1.9 50 196-250 6-55 (61)
155 1wff_A Riken cDNA 2810002D23 p 61.6 8.5 0.00029 34.9 4.5 37 195-236 21-58 (85)
156 1wg2_A Zinc finger (AN1-like) 60.5 5.9 0.0002 34.2 3.2 36 196-236 12-47 (64)
157 1sq4_A GLXB, glyoxylate-induce 60.4 2.9 0.0001 44.1 1.6 31 835-865 103-133 (278)
158 1fp0_A KAP-1 corepressor; PHD 60.3 4.8 0.00016 36.5 2.7 51 195-250 21-71 (88)
159 3v43_A Histone acetyltransfera 60.2 4.2 0.00014 37.6 2.4 49 199-250 61-111 (112)
160 2ct0_A Non-SMC element 1 homol 59.5 14 0.00048 32.2 5.5 50 196-251 12-61 (74)
161 3nw4_A Gentisate 1,2-dioxygena 58.8 4.4 0.00015 45.1 2.7 29 837-865 139-167 (368)
162 3bu7_A Gentisate 1,2-dioxygena 58.6 4.3 0.00015 45.5 2.6 29 836-864 328-356 (394)
163 1sfn_A Conserved hypothetical 58.6 3.4 0.00012 42.6 1.7 32 834-865 198-229 (246)
164 1dgw_A Canavalin; duplicated s 58.1 4.6 0.00016 39.8 2.4 27 839-865 82-108 (178)
165 3t6p_A Baculoviral IAP repeat- 57.9 4.9 0.00017 44.2 2.9 42 197-251 293-335 (345)
166 1joc_A EEA1, early endosomal a 57.3 2.1 7.1E-05 40.7 -0.2 37 197-234 67-105 (125)
167 1zrr_A E-2/E-2' protein; nicke 56.8 7.2 0.00025 39.2 3.6 36 841-876 123-158 (179)
168 2ysm_A Myeloid/lymphoid or mix 56.0 9.3 0.00032 35.0 4.0 59 196-260 4-63 (111)
169 2vqa_A SLL1358 protein, MNCA; 55.6 3.3 0.00011 44.4 1.0 25 840-864 96-120 (361)
170 2yw8_A RUN and FYVE domain-con 55.4 2.4 8.1E-05 37.4 -0.1 38 196-234 16-55 (82)
171 1wgm_A Ubiquitin conjugation f 54.4 9.7 0.00033 34.4 3.7 46 198-251 21-66 (98)
172 2ro1_A Transcription intermedi 54.4 4.7 0.00016 40.6 1.9 48 199-251 2-49 (189)
173 2vje_B MDM4 protein; proto-onc 53.8 5.3 0.00018 33.0 1.7 48 197-251 5-53 (63)
174 2d5f_A Glycinin A3B4 subunit; 53.7 5.3 0.00018 46.0 2.4 32 845-876 118-149 (493)
175 1sfn_A Conserved hypothetical 53.5 4.4 0.00015 41.8 1.5 30 837-866 83-112 (246)
176 3es1_A Cupin 2, conserved barr 52.8 6.1 0.00021 39.5 2.3 35 841-876 119-153 (172)
177 2puy_A PHD finger protein 21A; 52.2 3.6 0.00012 34.0 0.5 48 197-249 3-50 (60)
178 3t7l_A Zinc finger FYVE domain 52.0 5.2 0.00018 35.9 1.5 37 196-233 17-55 (90)
179 1z2q_A LM5-1; membrane protein 51.8 6.1 0.00021 34.9 1.9 37 196-233 18-56 (84)
180 2c2l_A CHIP, carboxy terminus 51.5 5.8 0.0002 40.5 2.0 48 197-252 206-253 (281)
181 2ct7_A Ring finger protein 31; 51.5 7.6 0.00026 34.3 2.5 36 323-358 19-59 (86)
182 1x4w_A Hypothetical protein FL 51.4 6.1 0.00021 34.4 1.8 36 196-236 12-50 (67)
183 1x4u_A Zinc finger, FYVE domai 51.3 5.3 0.00018 35.2 1.5 38 196-234 11-50 (84)
184 2e9q_A 11S globulin subunit be 50.9 5.5 0.00019 45.5 1.9 35 844-878 131-165 (459)
185 4b29_A Dimethylsulfoniopropion 50.7 5.2 0.00018 41.7 1.5 46 813-864 149-195 (217)
186 2e6r_A Jumonji/ARID domain-con 50.6 3.7 0.00013 37.1 0.4 53 195-250 12-65 (92)
187 1vr3_A Acireductone dioxygenas 49.5 10 0.00034 38.7 3.4 37 841-877 128-164 (191)
188 3dpl_R Ring-box protein 1; ubi 49.3 12 0.0004 34.5 3.5 28 217-251 71-98 (106)
189 3asl_A E3 ubiquitin-protein li 49.3 7.5 0.00026 33.4 2.0 48 201-250 20-68 (70)
190 3hcs_A TNF receptor-associated 49.1 5.4 0.00018 38.6 1.3 45 198-250 17-61 (170)
191 1sq4_A GLXB, glyoxylate-induce 48.4 5.5 0.00019 42.1 1.3 31 835-865 225-255 (278)
192 3htk_C E3 SUMO-protein ligase 48.3 10 0.00035 40.7 3.3 50 197-252 179-230 (267)
193 1rc6_A Hypothetical protein YL 48.3 8 0.00027 39.9 2.5 30 836-865 95-124 (261)
194 4e2q_A Ureidoglycine aminohydr 48.3 5.7 0.00019 42.4 1.4 24 841-864 110-133 (266)
195 1y02_A CARP2, FYVE-ring finger 47.9 5.5 0.00019 37.9 1.1 37 197-234 17-55 (120)
196 3shb_A E3 ubiquitin-protein li 47.7 6.9 0.00024 34.5 1.6 48 201-250 28-76 (77)
197 2kre_A Ubiquitin conjugation f 47.4 12 0.00042 33.8 3.3 46 197-251 27-72 (100)
198 1wfh_A Zinc finger (AN1-like) 46.7 15 0.0005 31.8 3.4 36 196-236 12-47 (64)
199 3c3v_A Arachin ARAH3 isoform; 46.5 7.6 0.00026 45.0 2.2 34 845-878 131-164 (510)
200 1sef_A Conserved hypothetical 46.3 8.7 0.0003 40.1 2.4 30 836-865 98-127 (274)
201 2d40_A Z3393, putative gentisa 45.2 9.9 0.00034 41.6 2.7 27 837-863 303-329 (354)
202 1wev_A Riken cDNA 1110020M19; 44.8 2.4 8.3E-05 38.0 -1.8 54 196-250 13-71 (88)
203 4a0k_B E3 ubiquitin-protein li 44.3 5.4 0.00018 37.6 0.4 26 218-250 83-108 (117)
204 1fxz_A Glycinin G1; proglycini 44.0 8.8 0.0003 44.0 2.1 30 842-871 115-144 (476)
205 3bu7_A Gentisate 1,2-dioxygena 43.0 11 0.00037 42.4 2.6 27 836-862 158-184 (394)
206 2arc_A ARAC, arabinose operon 42.5 14 0.00049 33.9 3.0 30 835-864 51-80 (164)
207 3ask_A E3 ubiquitin-protein li 42.2 7 0.00024 41.0 0.9 49 200-250 175-224 (226)
208 2k16_A Transcription initiatio 42.1 13 0.00044 31.8 2.4 51 197-250 16-67 (75)
209 3cjx_A Protein of unknown func 42.1 11 0.00039 37.2 2.3 33 845-877 85-126 (165)
210 2e6s_A E3 ubiquitin-protein li 41.3 11 0.00038 33.0 1.9 48 201-250 28-76 (77)
211 1vfy_A Phosphatidylinositol-3- 41.2 9.9 0.00034 32.7 1.5 33 200-233 12-46 (73)
212 1dvp_A HRS, hepatocyte growth 40.8 7.8 0.00027 39.6 1.0 34 199-233 161-196 (220)
213 3zyq_A Hepatocyte growth facto 40.3 8.2 0.00028 39.8 1.0 34 199-233 164-199 (226)
214 2y0o_A Probable D-lyxose ketol 39.7 11 0.00039 37.9 1.9 41 839-881 117-158 (175)
215 3v43_A Histone acetyltransfera 39.6 11 0.00039 34.7 1.8 46 210-260 23-70 (112)
216 1vq8_T 50S ribosomal protein L 38.3 9.3 0.00032 36.5 1.0 42 813-856 14-55 (120)
217 2a20_A Regulating synaptic mem 37.7 3 0.0001 35.6 -2.2 52 195-249 5-58 (62)
218 3zyq_A Hepatocyte growth facto 37.3 68 0.0023 33.0 7.4 61 299-359 129-197 (226)
219 2kr4_A Ubiquitin conjugation f 36.8 12 0.00042 32.6 1.5 44 198-250 13-56 (85)
220 1uij_A Beta subunit of beta co 36.7 12 0.00041 42.0 1.7 46 813-863 65-114 (416)
221 1fxz_A Glycinin G1; proglycini 36.3 15 0.00051 42.1 2.4 66 811-876 353-419 (476)
222 2ri7_A Nucleosome-remodeling f 36.2 8.6 0.00029 37.6 0.4 49 196-251 5-59 (174)
223 3j21_U 50S ribosomal protein L 34.9 12 0.0004 35.9 1.0 40 814-855 18-57 (121)
224 1wen_A Inhibitor of growth fam 34.7 22 0.00075 30.7 2.7 48 197-250 14-64 (71)
225 2yt5_A Metal-response element- 34.3 5.2 0.00018 33.4 -1.3 50 196-249 3-59 (66)
226 3mpx_A FYVE, rhogef and PH dom 33.1 9.1 0.00031 42.1 0.0 38 196-234 372-411 (434)
227 2ea7_A 7S globulin-1; beta bar 31.7 20 0.00067 40.6 2.4 26 839-864 102-127 (434)
228 3c3v_A Arachin ARAH3 isoform; 31.2 20 0.00068 41.6 2.4 102 773-876 351-453 (510)
229 1wim_A KIAA0161 protein; ring 31.0 13 0.00044 32.6 0.6 51 199-250 5-60 (94)
230 3kv5_D JMJC domain-containing 30.7 21 0.00071 41.1 2.4 58 197-261 35-98 (488)
231 1v5n_A PDI-like hypothetical p 30.4 17 0.00059 32.5 1.4 31 328-358 47-77 (89)
232 2cav_A Protein (canavalin); vi 29.5 25 0.00085 39.9 2.8 27 840-866 128-155 (445)
233 1xwh_A Autoimmune regulator; P 29.4 13 0.00044 31.4 0.3 49 196-249 5-53 (66)
234 1j58_A YVRK protein; cupin, de 28.7 26 0.0009 37.9 2.7 25 841-865 123-147 (385)
235 2o1q_A Putative acetyl/propion 28.5 20 0.00069 34.1 1.6 26 845-870 89-115 (145)
236 2vrw_B P95VAV, VAV1, proto-onc 28.4 30 0.001 37.8 3.1 38 324-361 353-393 (406)
237 2zet_C Melanophilin; complex, 28.3 17 0.00057 35.9 0.9 35 327-361 67-104 (153)
238 2d5f_A Glycinin A3B4 subunit; 27.8 15 0.00051 42.4 0.6 121 773-897 346-467 (493)
239 3nw0_A Non-structural maintena 27.3 46 0.0016 34.7 4.1 49 197-251 178-226 (238)
240 2dj8_A Protein CBFA2T1; zinc f 27.1 44 0.0015 27.5 3.2 32 197-231 13-45 (60)
241 1wep_A PHF8; structural genomi 26.3 1.9E+02 0.0066 24.8 7.3 47 197-250 10-62 (79)
242 1zbd_B Rabphilin-3A; G protein 25.8 40 0.0014 32.5 3.1 37 326-362 53-92 (134)
243 3kgl_A Cruciferin; 11S SEED gl 24.2 28 0.00097 39.9 2.0 30 845-874 150-179 (466)
244 3lqh_A Histone-lysine N-methyl 23.8 55 0.0019 33.1 3.8 47 199-251 2-63 (183)
245 2o35_A Hypothetical protein DU 23.4 23 0.00078 33.1 0.8 13 223-235 42-54 (105)
246 3fyb_A Protein of unknown func 23.3 23 0.00079 33.0 0.8 13 223-235 41-53 (104)
247 2yw8_A RUN and FYVE domain-con 23.0 46 0.0016 29.1 2.7 35 324-359 15-52 (82)
248 3qac_A 11S globulin SEED stora 23.0 35 0.0012 39.1 2.5 34 845-878 135-168 (465)
249 2kwj_A Zinc finger protein DPF 22.9 17 0.00059 33.7 -0.1 57 201-261 3-68 (114)
250 2f42_A STIP1 homology and U-bo 22.6 31 0.001 34.8 1.6 44 199-250 106-149 (179)
251 1wem_A Death associated transc 22.4 48 0.0017 28.3 2.7 47 197-250 14-69 (76)
252 2ku3_A Bromodomain-containing 22.3 32 0.0011 29.7 1.5 49 196-249 13-64 (71)
253 3nw4_A Gentisate 1,2-dioxygena 22.3 43 0.0015 37.3 2.9 30 838-867 315-344 (368)
254 2yu4_A E3 SUMO-protein ligase 22.1 26 0.00089 31.0 0.9 51 198-250 6-58 (94)
255 2jmo_A Parkin; IBR, E3 ligase, 22.0 57 0.0019 28.4 3.1 34 326-359 23-67 (80)
256 1x4s_A Protein FON, zinc finge 21.7 46 0.0016 28.3 2.3 33 199-232 11-45 (59)
257 2l43_A N-teminal domain from h 21.5 46 0.0016 29.7 2.4 49 197-250 23-74 (88)
258 2xb1_A Pygopus homolog 2, B-ce 21.3 24 0.00083 32.5 0.6 46 199-250 3-60 (105)
259 1z2q_A LM5-1; membrane protein 21.2 68 0.0023 28.1 3.4 35 324-359 17-54 (84)
260 2hqh_E Restin; beta/BETA struc 20.2 25 0.00085 25.5 0.3 9 327-335 2-10 (26)
No 1
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-129 Score=1062.42 Aligned_cols=353 Identities=32% Similarity=0.537 Sum_probs=273.8
Q ss_pred CCCcCchhhHHHHHHHhhcCCCEEEEccccccCCCCCChhHHHHHHhhhccccccccCCceeEeecCCCceeecchhhhh
Q 002348 494 STKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFF 573 (933)
Q Consensus 494 ~~di~~~~~l~hFQ~hW~kGePVIVr~Vl~~~s~lsW~P~~mwra~~e~~~~~~~~~~~~vkaIDCld~~eVei~i~qFF 573 (933)
..|..+++|+.|||+||++|||||||||++++++++|+|++||++|++. .+++|||++|++++|++++||
T Consensus 15 L~d~~~~~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~gd~----------~~~lidC~~~~~~~i~v~~Ff 84 (392)
T 2ypd_A 15 LKDYKNSSNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGDH----------QADLLNCKDSIISNANVKEFW 84 (392)
T ss_dssp ECCTTCTTHHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHTTS----------CCCCEETTTCCBCSCCHHHHH
T ss_pred ecCCCCcccHHHHHHHHhCCCcEEEechhhhCcCCccCHHHHHHHhcCc----------eeeeeeCCCCccccCcHHHHh
Confidence 3455666999999999999999999999999999999999999998742 367899999999999999999
Q ss_pred ccccCCcc---CCCCccceeecCCCCCCCchhhhcccchHHHHhCCCCcCcCCCCCccccccccCCCCCCCCCCCcchhh
Q 002348 574 KGYTQGRT---YDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYI 650 (933)
Q Consensus 574 ~Gy~~gr~---~~~~wp~mLKLKDWPps~~F~e~lP~h~~eFi~aLP~~EYT~pr~G~LNLAakLP~~~lkPDLGPK~YI 650 (933)
+||++++. ++++||+|||||||||+++|+++||+||+|||++|||||||||+ |+||||++||+++++|||||||||
T Consensus 85 ~Gf~~~~~r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p~-G~LNLAs~LP~~~~kPDLGPK~Yi 163 (392)
T 2ypd_A 85 DGFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCS 163 (392)
T ss_dssp HTSSBGGGC------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHSTT-CTTCCTTTSCGGGCC---CCEEEE
T ss_pred hhccccccCCcCCCCCcceeeecCCCChHHHHHHhHHHHHHHHHcCCchHhhCCC-ccchHHHhCCCCCCCCCCCcchhh
Confidence 99998753 57999999999999999999999999999999999999999986 999999999999999999999999
Q ss_pred ccccccccCCCCCcccccccccccchhhhcccccccchHhHHHHHHHHHHHHhhhhhhhhccCCCCccccCCCCCCCCCC
Q 002348 651 AYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKED 730 (933)
Q Consensus 651 AYG~~eelGrGDSvTkLH~DmSDAVNIL~htaev~~~~~q~~~i~kl~~k~~~q~~~e~~~~~~~~~~~~e~~~~~~~~~ 730 (933)
|||+++++|+|+|||||||||||||||||||++++... ..... ...+++.++ +
T Consensus 164 AYG~~~~~~~~~gvT~LH~DmsDaVNiL~h~~~~~~~~-~~~~~-~~l~~~~~~-------------------------~ 216 (392)
T 2ypd_A 164 AYGVVAAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNG-ILSKA-GILKKFEEE-------------------------D 216 (392)
T ss_dssp ECCSTTTTCTTCCSEEEEECSSEEEEEEEEEECCBCTT-CCCHH-HHHHHHHTS-------------------------C
T ss_pred hcCcchhcccCCCcceeeeehhhhhhhhheecccCccc-cchhh-hhhhhhhhc-------------------------c
Confidence 99999999999999999999999999999998654222 11111 112222111 1
Q ss_pred CCcccccccccCCCCcccccccccccccCCccccCCCCCCccCCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCC
Q 002348 731 TDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVE 810 (933)
Q Consensus 731 ~d~~~i~~~~~~~s~~~~~~k~~~~~~~g~~~~~~~~~~~~~~~~GAlWDIFrreDvpKLreyL~kh~~Ef~h~~~~pv~ 810 (933)
+|.. . + .++.+ ..+.+||+||||||||++|||+||++|++||. .++.
T Consensus 217 ~d~~--~---------~--~r~~~----------------~~~~~GAlW~Ifr~~D~~klr~~L~~~~~e~~----~~~~ 263 (392)
T 2ypd_A 217 LDDI--L---------R--KRLKD----------------SSEIPGALWHIYAGKDVDKIREFLQKISKEQG----LEVL 263 (392)
T ss_dssp CCHH--H---------H--HHHTC----------------TTCCEEEEEEEECGGGHHHHHHHHHHHHHHHC--------
T ss_pred ccHH--H---------h--hhccC----------------CCCCCCceeeeeCHhhHHHHHHHHHHHHHhhC----CCcc
Confidence 2100 0 0 00110 13578999999999999999999999999984 5678
Q ss_pred cccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHHHhh
Q 002348 811 QVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFR 890 (933)
Q Consensus 811 ~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR 890 (933)
++.||||||+||||++||++|+|||||+||||+|++|||||||||||||||||+||||||+||||||||++|++||+|||
T Consensus 264 ~~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~spe~~~~c~~lt~E~R 343 (392)
T 2ypd_A 264 PEHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELR 343 (392)
T ss_dssp --CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECCGGGHHHHHHHHHHC-
T ss_pred CCCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHHhcccchhhHhhhhcChhhHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccchhhhhheehhhhhhhhh
Q 002348 891 LLPKNHRAREDKLEVYLVFIKRKCYVHE 918 (933)
Q Consensus 891 ~Lp~~H~akEDKLeVkkm~l~~~~~~~e 918 (933)
+|| +|++||||||||||+||++..+..
T Consensus 344 ~l~-~~~~~edkLqvk~m~~~av~~av~ 370 (392)
T 2ypd_A 344 LLK-EEINYDDKLQVKNILYHAVKEMVR 370 (392)
T ss_dssp ----------------------------
T ss_pred hcc-hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 996 699999999999999999655443
No 2
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=99.18 E-value=1.5e-11 Score=123.31 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=32.3
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceecc
Q 002348 836 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 871 (933)
Q Consensus 836 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 871 (933)
++.++.++|.+||++|||+|..|||+||..||.|..
T Consensus 197 ~~~~~~~~l~pGD~LyiP~gW~H~V~~l~~sisvn~ 232 (235)
T 4gjz_A 197 KAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSF 232 (235)
T ss_dssp GCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEE
T ss_pred CCCcEEEEECCCCEEEeCCCCcEEEEECCCEEEEEE
Confidence 357899999999999999999999999999887753
No 3
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=99.09 E-value=4.2e-10 Score=123.08 Aligned_cols=53 Identities=32% Similarity=0.444 Sum_probs=50.4
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHHH
Q 002348 836 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKE 888 (933)
Q Consensus 836 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteE 888 (933)
+..++.++|.+||++|||+|-.|||+||..||.|+..|++|.|+...+++|-+
T Consensus 252 ~~~~~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~~~~~~~~ 304 (336)
T 3k2o_A 252 EFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVR 304 (336)
T ss_dssp GGCCEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHHHHHHHH
T ss_pred cCceEEEEECCCCEEEeCCCCcEEEecCCCeEEEEcccCCcccHHHHHHHHHh
Confidence 46889999999999999999999999999999999999999999999999964
No 4
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=98.87 E-value=4.8e-09 Score=114.11 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=39.5
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCccc
Q 002348 837 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 878 (933)
Q Consensus 837 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 878 (933)
+.++.+++.+||++|||+|..|||+||-.||.|..-|.++..
T Consensus 237 ~~~~~~~L~pGD~LyiP~gWwH~v~~l~~sisvn~~~~~~~~ 278 (338)
T 3al5_A 237 ARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLPS 278 (338)
T ss_dssp CCEEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECSSCG
T ss_pred CCCEEEEECCCCEEEECCCCeEEEeeCCCEEEEEEEecCCcc
Confidence 579999999999999999999999999999999999988764
No 5
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=98.82 E-value=3.1e-08 Score=109.81 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=60.1
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH-HhhcCCcccccccchh---hhhheehh
Q 002348 836 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK-EFRLLPKNHRAREDKL---EVYLVFIK 911 (933)
Q Consensus 836 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte-EfR~Lp~~H~akEDKL---eVkkm~l~ 911 (933)
..+++.++|..||++|||+|..|||.||..||-|+..|++..|+...++..+ |-|.= -.+|. ...+|++|
T Consensus 213 ~~~~~ev~l~pGEtLfIPsGWwH~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~~------~~~~f~fp~F~~~~w~ 286 (371)
T 3k3o_A 213 VDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLS------TADLFRFPNFETICWY 286 (371)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHHC----------CCCTTHHHHHHH
T ss_pred cCceEEEEECCCcEEEeCCCCeEEEecCCCeEEECCcccchhhHHHHHHHHHHHHhcC------CCcccccccHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999876 43321 11222 23555666
Q ss_pred hhhhhhhhh
Q 002348 912 RKCYVHEIS 920 (933)
Q Consensus 912 ~~~~~~e~~ 920 (933)
.+-.+++.+
T Consensus 287 ~~~~~~~~~ 295 (371)
T 3k3o_A 287 VGKHILDIF 295 (371)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655555543
No 6
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=98.82 E-value=2.5e-08 Score=113.01 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=49.3
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 887 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte 887 (933)
+..+++.++|..||++|||+|.-|||.||..||-|+..|++.-|+..-+++++
T Consensus 261 ~~~~~~~v~l~pGE~LfIPsGWwH~V~nledsIait~NF~~~~nl~~~l~~~~ 313 (451)
T 2yu1_A 261 RVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYN 313 (451)
T ss_dssp HSSCCEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCSSSHHHHHHHHH
T ss_pred ccccceEEEECCCcEEEeCCCceEEEecCCCeEEEeeeeCCcccHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999888876
No 7
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=98.77 E-value=1.5e-08 Score=114.72 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=61.9
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHHHhhcCCcccccccchhh---hhheehhhh
Q 002348 837 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLE---VYLVFIKRK 913 (933)
Q Consensus 837 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~akEDKLe---Vkkm~l~~~ 913 (933)
.+++.++|..||++|||+|..|||.||..||-|+..|++..|+..-++..+==+.+- -.+|.. ..+|++|.+
T Consensus 298 ~~~~~v~l~pGetlfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~E~~~~-----~~~~~~~p~f~~~~w~~~ 372 (447)
T 3kv4_A 298 DKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLS-----TADLFRFPNFETICWYVG 372 (447)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEESSCEEEEEEEECCSTTHHHHHHHHHHHHHTT-----CCGGGSCTTHHHHHHHHH
T ss_pred cceEEEEECCCcEEecCCCCeEEEecCCCEEEEccccccccCHHHHHHHHHHHHhcC-----CCccccccCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999887223321 123332 355666666
Q ss_pred hhhhhhh
Q 002348 914 CYVHEIS 920 (933)
Q Consensus 914 ~~~~e~~ 920 (933)
-.+++.+
T Consensus 373 ~~~~~~~ 379 (447)
T 3kv4_A 373 KHILDIF 379 (447)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655544
No 8
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=98.73 E-value=2.5e-08 Score=114.00 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=48.3
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH
Q 002348 837 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 887 (933)
Q Consensus 837 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte 887 (933)
.+++.++|.+||++|||+|..|||.||..||-|...|++..|+...++..+
T Consensus 333 ~~~~~~~l~pGe~lfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~ 383 (488)
T 3kv5_D 333 DKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYE 383 (488)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred cceEEEeeCCCCEEEeCCCceEEeeCCCCeEEEccccCCccCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999888654
No 9
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=98.71 E-value=7.6e-08 Score=107.49 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=48.3
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH
Q 002348 836 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 887 (933)
Q Consensus 836 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte 887 (933)
..+++.++|.+||++|||+|..|||.||..||-|...|+++.|+...++..+
T Consensus 241 ~~~~~~v~l~pGe~lfIPsGW~H~V~nledSIai~~NFl~~~nl~~~l~~~~ 292 (397)
T 3kv9_A 241 VDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYE 292 (397)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred cCceEEEEECCCCEEEeCCCCeEEccCCcCeEEECCcccCchhHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999998887654
No 10
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=98.71 E-value=4.5e-09 Score=115.00 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=36.4
Q ss_pred CccceEEEeecCceeEecCCCcccccccc-ccceecccccC
Q 002348 836 GVEPWTFEQKLGEAVFIPAGCPHQVRNLK-SCTKVAVDFVS 875 (933)
Q Consensus 836 GVepWtf~Q~lGEAVFIPAGCPHQVRNLk-SCIKVAlDFVS 875 (933)
.+.++.+++.+||++|||+|..|||+||. .++.|++.|..
T Consensus 257 ~~~~~~~~l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w~ 297 (349)
T 3d8c_A 257 NVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 297 (349)
T ss_dssp GCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEE
T ss_pred cCCcEEEEECCCCEEEECCCCcEEEEEcCCCCcEEEEEEEc
Confidence 35799999999999999999999999998 58889988865
No 11
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=98.60 E-value=2e-07 Score=104.00 Aligned_cols=79 Identities=19% Similarity=0.120 Sum_probs=61.7
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH-HhhcCCcccccccchh---hhhheehh
Q 002348 836 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK-EFRLLPKNHRAREDKL---EVYLVFIK 911 (933)
Q Consensus 836 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte-EfR~Lp~~H~akEDKL---eVkkm~l~ 911 (933)
..+++.++|..||++|||+|..|||.|+..||-|...||+..|+..-++..+ |-|.= -.+|. ...+|++|
T Consensus 240 ~~~~~ev~l~pGEtlfIPsGWwH~V~nledSIai~gNFl~~~nl~~~l~~~~~E~~~~------~~~~f~fp~F~~~~wy 313 (392)
T 3pua_A 240 VDKCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYEVERRLK------LGSLTQFPNFETACWY 313 (392)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCTTCHHHHHHHHHHHHHHT------CCCSSCCTTHHHHHHH
T ss_pred ccceEEEEECCCcEEeeCCCceEEEecCCCEEEEcCcccChhhHHHHHHHHHHHHHhC------CCccCcCCChHHHHHH
Confidence 3689999999999999999999999999999999999999999999998887 54321 11222 33566666
Q ss_pred hhhhhhhhh
Q 002348 912 RKCYVHEIS 920 (933)
Q Consensus 912 ~~~~~~e~~ 920 (933)
.+-.+++.+
T Consensus 314 ~~~~~l~~~ 322 (392)
T 3pua_A 314 MGKHLLEAF 322 (392)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665555543
No 12
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=97.35 E-value=0.00011 Score=84.48 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=46.9
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHH
Q 002348 837 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 887 (933)
Q Consensus 837 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte 887 (933)
.....++|..||++|||+|..|+|.|+..||-|...||+..||..-+++++
T Consensus 363 ~~~~~v~l~pGEtlfIPsGW~HaV~tleDSIaiggNFl~~~nl~~qlri~~ 413 (528)
T 3pur_A 363 GAVKRVVIKEGQTLLIPAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMRVYH 413 (528)
T ss_dssp TCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCGGGHHHHHHHHH
T ss_pred ccEEEEEECCCCEEEecCCceEEEecCCCeEEEcCcccchhhHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999888664
No 13
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=97.17 E-value=0.0004 Score=76.24 Aligned_cols=87 Identities=18% Similarity=0.290 Sum_probs=71.6
Q ss_pred CCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEec
Q 002348 774 SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIP 853 (933)
Q Consensus 774 ~~GAlWDIFrreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIP 853 (933)
.+--+|=.-..+.+.+++++++++. .|. |.+.++++.+. |+ +.||.=+.|+|++||.|+|+
T Consensus 232 p~~~~Wy~VP~e~~~~~e~l~~k~~--------------~d~-~~~~~~~~p~~---L~-~~gIPvyr~~QkpGd~Vi~~ 292 (332)
T 2xxz_A 232 PGDCEWFAVHEHYWETISAFCDRHG--------------VDY-LTGSWWPILDD---LY-ASNIPVYRFVQRPGDLVWIN 292 (332)
T ss_dssp ESCEEEEEECGGGHHHHHHHHHHTT--------------CCT-TTSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEEC
T ss_pred CCceEEEEECHHHHHHHHHHHHhcC--------------Cch-hhceecCCHHH---HH-hCCCCeEEEEECCCCEEEEC
Confidence 3456899999999999999998632 122 34567776643 33 35999999999999999999
Q ss_pred CCCccccccccccceecccccCccch
Q 002348 854 AGCPHQVRNLKSCTKVAVDFVSPENV 879 (933)
Q Consensus 854 AGCPHQVRNLkSCIKVAlDFVSPEnV 879 (933)
+||-|||.|.=-|+++|..|..|...
T Consensus 293 PgayH~v~n~G~~~n~awN~a~~~~~ 318 (332)
T 2xxz_A 293 AGTVHWVQATGWCNNIAWNVGPLTAY 318 (332)
T ss_dssp TTCEEEEEESSSEEEEEEEEESCTTG
T ss_pred CCceEEEEecceeeEEEEEeCCCcHH
Confidence 99999999999999999999999765
No 14
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=97.06 E-value=0.00053 Score=79.25 Aligned_cols=89 Identities=21% Similarity=0.293 Sum_probs=73.5
Q ss_pred CCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEec
Q 002348 774 SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIP 853 (933)
Q Consensus 774 ~~GAlWDIFrreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIP 853 (933)
.+-.+|=.-..++..|++++++++. .|. |...|+++.+. |+ +.||.-+.|+|++||.|+++
T Consensus 291 gg~~~Wy~VP~e~~~k~e~l~~k~~--------------~~~-~~~~~~~~p~~---L~-~~gIPvyr~vQkpGd~Vi~~ 351 (531)
T 3avr_A 291 PGDCEWFVVPEGYWGVLNDFCEKNN--------------LNF-LMGSWWPNLED---LY-EANVPVYRFIQRPGDLVWIN 351 (531)
T ss_dssp ESCEEEEEECGGGHHHHHHHHHHTT--------------CCT-TTSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEEC
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHcC--------------CCh-hhceeecCHHH---HH-hCCCCeEEEEECCCCEEEEC
Confidence 3456899999999999999998651 233 34567777553 33 35999999999999999999
Q ss_pred CCCccccccccccceecccccCccchHH
Q 002348 854 AGCPHQVRNLKSCTKVAVDFVSPENVDE 881 (933)
Q Consensus 854 AGCPHQVRNLkSCIKVAlDFVSPEnV~e 881 (933)
+||.|||.|+=-|+++|..|..|.-+.-
T Consensus 352 PgayH~v~n~G~~~n~awN~a~~~~~q~ 379 (531)
T 3avr_A 352 AGTVHWVQAIGWCNNIAWNVGPLTACQY 379 (531)
T ss_dssp TTCEEEEEESSSEEEEEEEECCSSHHHH
T ss_pred CCceEEEEecceeeeeEEEeccCchHHH
Confidence 9999999999999999999999996653
No 15
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=96.48 E-value=0.0026 Score=73.03 Aligned_cols=87 Identities=18% Similarity=0.270 Sum_probs=71.3
Q ss_pred CCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEec
Q 002348 774 SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIP 853 (933)
Q Consensus 774 ~~GAlWDIFrreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIP 853 (933)
.+--+|=.=..+...+++++++++.. |. +.+.|+.+.+. | .+.||.=+.|+|++||.|+++
T Consensus 266 gg~c~WY~VP~e~~~k~e~l~~k~~~--------------d~-l~~~~~pspe~---L-~kagIPvyr~iQkPGdfVit~ 326 (510)
T 4ask_A 266 PGDCEWFAVHEHYWETISAFCDRHGV--------------DY-LTGSWWPILDD---L-YASNIPVYRFVQRPGDLVWIN 326 (510)
T ss_dssp ESCEEEEEECGGGHHHHHHHHHHTTC--------------CT-TTSCBCCCHHH---H-HHTTCCCEEEEECTTCEEEEC
T ss_pred CCceeEEEECHHHHHHHHHHHHHhCc--------------ch-hhccccCCHHH---H-HhCCCCeEEEEECCCCEEEEC
Confidence 34569999999999999999986421 22 33667776653 3 347999999999999999999
Q ss_pred CCCccccccccccceecccccCccch
Q 002348 854 AGCPHQVRNLKSCTKVAVDFVSPENV 879 (933)
Q Consensus 854 AGCPHQVRNLkSCIKVAlDFVSPEnV 879 (933)
+|+.|+|.|.-=|+++|-.|.-|-..
T Consensus 327 PgtyH~Vqs~Gf~~niaWNvap~t~~ 352 (510)
T 4ask_A 327 AGTVHWVQATGWCNNIAWNVGPLTAY 352 (510)
T ss_dssp TTCEEEEEESSSEEEEEEEECBSSHH
T ss_pred CCceEEEEecCeeeeeEEEecCCCHH
Confidence 99999999999999999999888543
No 16
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=95.98 E-value=0.0078 Score=66.61 Aligned_cols=94 Identities=21% Similarity=0.215 Sum_probs=79.0
Q ss_pred eEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCC
Q 002348 777 ALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 856 (933)
Q Consensus 777 AlWDIFrreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGC 856 (933)
-+|=.-.+++..|+++++++.+.+.- ..|. +=+|.+.+.++++. |+ +.||.-.+++|++||.|++-.|+
T Consensus 210 K~WY~VP~~~~~kfE~l~k~~~p~~~-~~c~------~fL~h~~~lisP~~---L~-~~GIpv~~~vQ~pGEfViTfP~a 278 (354)
T 3dxt_A 210 KTWYVVPPEHGQRLERLARELFPGSS-RGCG------AFLRHKVALISPTV---LK-ENGIPFNRITQEAGEFMVTFPYG 278 (354)
T ss_dssp EEEEEECGGGHHHHHHHHHHHSHHHH-HHCT------TGGGGCCEEECHHH---HH-HTTCCCEEEEECTTCEEEECTTC
T ss_pred eEEEEeCHHHHHHHHHHHHHhCchhh-hhcH------HHHhcCcccCCHHH---HH-HCCCceEEEEeCCCcEEEECCCc
Confidence 49999999999999999998865421 1232 23566788899873 44 47999999999999999999999
Q ss_pred ccccccccccceecccccCccchHH
Q 002348 857 PHQVRNLKSCTKVAVDFVSPENVDE 881 (933)
Q Consensus 857 PHQVRNLkSCIKVAlDFVSPEnV~e 881 (933)
=|.|.|+--++..|..|..|+=+..
T Consensus 279 YH~gfn~Gfn~aEAvNFA~~~Wl~~ 303 (354)
T 3dxt_A 279 YHAGFNHGFNCAEAINFATPRWIDY 303 (354)
T ss_dssp EEEEEESSSEEEEEEEECCGGGHHH
T ss_pred eEEEeeccccHhHhhccCcHHHHHh
Confidence 9999999999999999999998764
No 17
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=95.05 E-value=0.029 Score=62.52 Aligned_cols=93 Identities=19% Similarity=0.213 Sum_probs=74.8
Q ss_pred eEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCC
Q 002348 777 ALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 856 (933)
Q Consensus 777 AlWDIFrreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGC 856 (933)
-+|=.-..+++.|+++++++++.+.- ..|. +=+|...+.+++. .|+ +.||.-.+++|++||.|++=.|+
T Consensus 253 K~WY~VP~~~~~kfE~l~k~~~p~~~-~~c~------~fL~h~~~lisP~---~L~-~~GIpv~r~vQ~pGEfViTfP~a 321 (373)
T 3opt_A 253 KQWYSIPQEDRFKFYKFMQEQFPEEA-KNCP------EFLRHKMFLASPK---LLQ-ENGIRCNEIVHHEGEFMITYPYG 321 (373)
T ss_dssp EEEEECCGGGHHHHHHHHHHSSHHHH-SSCS------SCTTTSCEEECHH---HHH-TTTCCCEEEEECTTCEEEECTTC
T ss_pred eEEEEeCHHHHHHHHHHHHHhChhhh-hhCH------HHhhCCcccCCHH---HHH-hcCCceEEEEECCCCEEEECCCc
Confidence 48999999999999999998876421 1232 3356677888885 344 57999999999999999999999
Q ss_pred ccccccccccceecccccCccchH
Q 002348 857 PHQVRNLKSCTKVAVDFVSPENVD 880 (933)
Q Consensus 857 PHQVRNLkSCIKVAlDFVSPEnV~ 880 (933)
=|.|.|+--++..|..|..|+=+.
T Consensus 322 YH~gfn~Gfn~aEAvNFA~~~Wl~ 345 (373)
T 3opt_A 322 YHAGFNYGYNLAESVNFALEEWLP 345 (373)
T ss_dssp CEEEEESSSEEEEEEEECCC----
T ss_pred eEEEEecCccHHHHHccCcHHHHH
Confidence 999999999999999999987654
No 18
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=94.68 E-value=0.047 Score=61.06 Aligned_cols=95 Identities=16% Similarity=0.138 Sum_probs=78.7
Q ss_pred ceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCC
Q 002348 776 GALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAG 855 (933)
Q Consensus 776 GAlWDIFrreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAG 855 (933)
--+|=.-.++++.|+++++++++.+.-. .| .+=+|...+.++++. |+ +.||.-.+++|++||.|++=.|
T Consensus 227 pK~WY~VP~~~~~kfE~l~~~~~P~~~~-~~------~~~L~h~~~~isP~~---L~-~~GIpv~r~vQ~pGEfViTfP~ 295 (381)
T 2ox0_A 227 PKSWYSVPPEHGKRLERLAKGFFPGSAQ-SC------EAFLRHKMTLISPLM---LK-KYGIPFDKVTQEAGEFMITFPY 295 (381)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHSHHHHH-HC------TTGGGGSCEEECHHH---HH-HTTCCCEEEEECTTCEEEECTT
T ss_pred ceEEEecCHHHHHHHHHHHHHhChhhhh-cc------hHHhhccccccCHHH---HH-HCCCceEEEEecCCCEEEECCC
Confidence 3589999999999999999998764211 23 233566788888853 33 5799999999999999999999
Q ss_pred CccccccccccceecccccCccchHH
Q 002348 856 CPHQVRNLKSCTKVAVDFVSPENVDE 881 (933)
Q Consensus 856 CPHQVRNLkSCIKVAlDFVSPEnV~e 881 (933)
+=|.|.|+=-++..|..|..|+=+..
T Consensus 296 aYH~gfn~GfN~aEAvNFA~~~Wl~~ 321 (381)
T 2ox0_A 296 GYHAGFNHGFNCAESTNFATRRWIEY 321 (381)
T ss_dssp CEEEEEECSSEEEEEEEECCTTHHHH
T ss_pred cEEEeecCcccHHHHhccCcHHHHHH
Confidence 99999999999999999999876654
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.00 E-value=0.24 Score=41.28 Aligned_cols=49 Identities=27% Similarity=0.590 Sum_probs=35.1
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.....|--|...-...++. .|+ ..||..||..|.... .....||.||..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~--~Cg-H~fC~~Ci~~~~~~~---~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTI--DCG-HNFCLKCITQIGETS---CGFFKCPLCKTS 66 (73)
T ss_dssp CCCCBCTTTCSBCSSEEEC--TTC-CEEEHHHHHHHCSSS---CSCCCCSSSCCC
T ss_pred ccCCEeccCCcccCCeEEc--CCC-ChhhHHHHHHHHHcC---CCCCCCCCCCCc
Confidence 3456788888765543333 799 889999999998521 234589999874
No 20
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=91.88 E-value=0.11 Score=56.92 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=32.7
Q ss_pred ccceEEEeecCceeEecCCCccccccc--cccceeccc
Q 002348 837 VEPWTFEQKLGEAVFIPAGCPHQVRNL--KSCTKVAVD 872 (933)
Q Consensus 837 VepWtf~Q~lGEAVFIPAGCPHQVRNL--kSCIKVAlD 872 (933)
..++.++-.+||+.|||+|.+|||+++ ..|+.|.+-
T Consensus 215 ~~~~~~~L~pGD~LyiP~gwwH~v~s~~~~~slsvsi~ 252 (342)
T 1vrb_A 215 PDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFG 252 (342)
T ss_dssp CSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEEC
T ss_pred CCceEEEECCCcEEEeCCCccEEEEECCCCceEEEEEC
Confidence 567999999999999999999999999 468888877
No 21
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.51 E-value=0.22 Score=41.74 Aligned_cols=46 Identities=26% Similarity=0.602 Sum_probs=33.8
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.....|--|...-...++. .|+ ..||..||..|+... ..||.||..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~--~Cg-H~fC~~Ci~~~~~~~------~~CP~Cr~~ 58 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSL--PCK-HVFCYLCVKGASWLG------KRCALCRQE 58 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEE--TTT-EEEEHHHHHHCTTCS------SBCSSSCCB
T ss_pred CCCCCCccCCcccCCCEEc--cCC-CHHHHHHHHHHHHCC------CcCcCcCch
Confidence 4556788888665443332 698 889999999998642 589999874
No 22
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.95 E-value=0.18 Score=42.56 Aligned_cols=47 Identities=23% Similarity=0.688 Sum_probs=34.1
Q ss_pred cCCCCccccccCCC-CceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 197 LERIKCHQCMKSER-KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 197 ~~~~~CHQCrqkt~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
.....|.-|...-. ...+....|+ ..||..||.+|... ...||.||.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~-H~fh~~Ci~~w~~~------~~~CP~Cr~ 68 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCN-HEFHAKCVDKWLKA------NRTCPICRA 68 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTT-EEEETTHHHHHHHH------CSSCTTTCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCC-CHhHHHHHHHHHHc------CCcCcCcCC
Confidence 45567888986532 3344555698 88999999999742 358999986
No 23
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=90.89 E-value=0.07 Score=48.73 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.5
Q ss_pred EEeecCceeEecCCCccccccccc
Q 002348 842 FEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 842 f~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
+.=..||.|+||||+||+++|.-.
T Consensus 75 ~~l~~Gd~i~ipa~~~H~~~n~~~ 98 (112)
T 2opk_A 75 RVMRPGDWLHVPAHCRHRVAWTDG 98 (112)
T ss_dssp EEECTTEEEEECTTCCEEEEEECS
T ss_pred EEECCCCEEEECCCCcEEEEeCCC
Confidence 444679999999999999999864
No 24
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=90.64 E-value=0.24 Score=41.92 Aligned_cols=53 Identities=26% Similarity=0.618 Sum_probs=36.6
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCcc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 252 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 252 (933)
.....|.-|...-...++ ..|+ ..||..||..|+...........||.||...
T Consensus 17 ~~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVS--ADCN-HSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp CTTTSCTTTCSCCSSCEE--CTTS-CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred ccCCCCcCCChhhCccee--CCCC-CHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 345679999876554442 3599 8999999999985322122367899998754
No 25
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=90.59 E-value=0.12 Score=46.02 Aligned_cols=58 Identities=26% Similarity=0.448 Sum_probs=38.7
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002348 813 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 877 (933)
Q Consensus 813 ~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 877 (933)
.|+ +++-+|+....- ++.+..=++.=..||+++||+|.||+++|...|.-+.+ ++.||
T Consensus 57 ~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~v-~~~~~ 114 (115)
T 1yhf_A 57 SSP-GDAMVTILSGLA-----EITIDQETYRVAEGQTIVMPAGIPHALYAVEAFQMLLV-VVKPE 114 (115)
T ss_dssp CCS-SEEEEEEEESEE-----EEEETTEEEEEETTCEEEECTTSCEEEEESSCEEEEEE-EECSC
T ss_pred ECC-CcEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCCceEEEE-EEccC
Confidence 455 456666654432 13345556777899999999999999999886544333 44444
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.48 E-value=0.18 Score=43.18 Aligned_cols=48 Identities=23% Similarity=0.593 Sum_probs=36.0
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCccc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 253 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~CN 253 (933)
.....|--|...-...++ ..|+ ..||..||..|+.. ...||.||..-+
T Consensus 13 ~~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVV--TKCR-HYFCESCALEHFRA------TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEEE--CTTS-CEEEHHHHHHHHHH------CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCeeE--ccCC-CHhHHHHHHHHHHC------CCcCCCcCcccc
Confidence 455678888776555443 5799 89999999999842 458999998654
No 27
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=90.25 E-value=0.34 Score=45.93 Aligned_cols=43 Identities=28% Similarity=0.827 Sum_probs=32.0
Q ss_pred CCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 200 IKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 200 ~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.+|--|...-...++ ..|+ ..||..||..|... ...||.||..
T Consensus 54 ~~C~iC~~~~~~~~~--~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 96 (138)
T 4ayc_A 54 LQCIICSEYFIEAVT--LNCA-HSFCSYCINEWMKR------KIECPICRKD 96 (138)
T ss_dssp SBCTTTCSBCSSEEE--ETTS-CEEEHHHHHHHTTT------CSBCTTTCCB
T ss_pred CCCcccCcccCCceE--CCCC-CCccHHHHHHHHHc------CCcCCCCCCc
Confidence 468888766554443 3699 89999999999854 2479999874
No 28
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=90.23 E-value=0.097 Score=46.67 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=39.2
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002348 812 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 877 (933)
Q Consensus 812 v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 877 (933)
..|| .+|-+|+-.-.- ++-|..=++.=..||+++||+|.||+++|...|. .+.+.+|.
T Consensus 50 H~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~--~l~v~~p~ 107 (116)
T 2pfw_A 50 HAHR-HSQVSYVVEGEF-----HVNVDGVIKVLTAGDSFFVPPHVDHGAVCPTGGI--LIDTFSPA 107 (116)
T ss_dssp ECCS-SEEEEEEEEECE-----EEEETTEEEEECTTCEEEECTTCCEEEEESSCEE--EEEEEESC
T ss_pred EECC-cceEEEEEeeEE-----EEEECCEEEEeCCCCEEEECcCCceeeEeCCCcE--EEEEECCc
Confidence 4566 666666643322 1333444677789999999999999999998763 34445553
No 29
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=90.03 E-value=0.16 Score=46.74 Aligned_cols=41 Identities=32% Similarity=0.244 Sum_probs=31.3
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002348 837 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 877 (933)
Q Consensus 837 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 877 (933)
|..=++.=..||+|+||+|.||+++|...---+.+-+++|.
T Consensus 76 ~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~i~~~~ 116 (145)
T 3ht1_A 76 DQGRTEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVVAPCE 116 (145)
T ss_dssp GGTEEEEECTTCEEEECTTCCBEEECCTTCCEEEEEEEESC
T ss_pred ECCEEEEECCCCEEEECCCCeEEeEcCCCCCEEEEEEECCC
Confidence 44556777899999999999999999876544555555555
No 30
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=89.78 E-value=0.11 Score=46.78 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=20.6
Q ss_pred EEeecCceeEecCCCccccccccc
Q 002348 842 FEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 842 f~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
+.-..||++|||+|.+|++.|.-+
T Consensus 61 ~~l~~G~~~~ip~G~~H~~~N~g~ 84 (98)
T 3lag_A 61 AQLKTGRSYARKAGVQHDVRNEST 84 (98)
T ss_dssp CCBCTTCCEEECTTCEEEEBCCSS
T ss_pred EEecCCcEEEEcCCCcEECEECCC
Confidence 445789999999999999999754
No 31
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=89.77 E-value=0.13 Score=46.87 Aligned_cols=42 Identities=21% Similarity=0.402 Sum_probs=31.1
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 877 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 877 (933)
+-|..=++.=..||+|+||+|.||+++|...+. +.+-+|.|.
T Consensus 69 ~~i~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~-~~~~~v~p~ 110 (114)
T 3fjs_A 69 IGVDGAQRRLHQGDLLYLGAGAAHDVNAITNTS-LLVTVVLVD 110 (114)
T ss_dssp EEETTEEEEECTTEEEEECTTCCEEEEESSSEE-EEEEEECC-
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEeCCCcE-EEEEEEeCC
Confidence 445555777889999999999999999997653 344555554
No 32
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=89.70 E-value=0.18 Score=45.36 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=26.6
Q ss_pred EeecCceeEecCCCcccccccccc--ceecccccCccc
Q 002348 843 EQKLGEAVFIPAGCPHQVRNLKSC--TKVAVDFVSPEN 878 (933)
Q Consensus 843 ~Q~lGEAVFIPAGCPHQVRNLkSC--IKVAlDFVSPEn 878 (933)
.=..||++|||+|.||+++|..+. .-+.+.|-+|+.
T Consensus 69 ~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i~~~~~~~ 106 (117)
T 2b8m_A 69 NYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAPHPKK 106 (117)
T ss_dssp EEETTCEEEECTTCEEEEECCSSSEEEEEEEECSCGGG
T ss_pred EeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCCCCC
Confidence 557899999999999999998653 344444444543
No 33
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=89.46 E-value=0.17 Score=45.95 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=28.9
Q ss_pred EEEeecCceeEecCCCccccccccccceecccccCcc
Q 002348 841 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 877 (933)
Q Consensus 841 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 877 (933)
++.=..||+|+||+|.||+++|..+---+.+.+++|-
T Consensus 80 ~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~~p~ 116 (125)
T 3h8u_A 80 VTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAPG 116 (125)
T ss_dssp EEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEEST
T ss_pred EEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEECCC
Confidence 5555789999999999999999876554555566663
No 34
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=89.45 E-value=0.11 Score=45.60 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=28.1
Q ss_pred ceEEEeecCceeEecCCCccccccccccceecccccCc
Q 002348 839 PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 876 (933)
Q Consensus 839 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 876 (933)
.=++.=..||+++||||.||+++|...+. .+..++|
T Consensus 73 ~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~--~l~~~~p 108 (110)
T 2q30_A 73 DAVIPAPRGAVLVAPISTPHGVRAVTDMK--VLVTIAP 108 (110)
T ss_dssp GCEEEECTTEEEEEETTSCEEEEESSSEE--EEEEEES
T ss_pred CEEEEECCCCEEEeCCCCcEEEEEcCCcE--EEEEECC
Confidence 35677789999999999999999998753 3444554
No 35
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=89.23 E-value=0.2 Score=44.78 Aligned_cols=37 Identities=22% Similarity=0.690 Sum_probs=31.3
Q ss_pred CCcccccCccc-cccccccccCcCC----cccchhchHHhhc
Q 002348 326 DERVYCNHCAT-SIIDLHRSCPKCS----YELCLTCCKEICE 362 (933)
Q Consensus 326 DERvyCDnCkT-SI~D~HRSC~~Cs----YDLCL~CC~ELR~ 362 (933)
-..+.||.|.. +|+-.-..|..|. ||||..|....+.
T Consensus 19 H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~ 60 (82)
T 2fc7_A 19 HVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHE 60 (82)
T ss_dssp ESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCC
T ss_pred eCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccc
Confidence 34678999996 8999999999996 9999999986543
No 36
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=89.22 E-value=0.34 Score=38.16 Aligned_cols=46 Identities=20% Similarity=0.671 Sum_probs=32.0
Q ss_pred CCCCccccccCCC--CceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 198 ERIKCHQCMKSER--KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 198 ~~~~CHQCrqkt~--~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
....|.-|...-. ...+....|+ ..||..||..|... ...||.||.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~-H~f~~~Ci~~w~~~------~~~CP~Cr~ 51 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCG-HGFHAECVDMWLGS------HSTCPLCRL 51 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSC-CEECTTHHHHTTTT------CCSCSSSCC
T ss_pred CCCcCccCCccccCCCceEECCCCC-CcccHHHHHHHHHc------CCcCcCCCC
Confidence 3456777765532 2234444698 88999999999854 357999986
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=89.13 E-value=0.16 Score=45.62 Aligned_cols=49 Identities=33% Similarity=0.874 Sum_probs=37.5
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCcc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 252 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 252 (933)
.....|.-|...-. .-+.|..|+ ..||..||..|+... ...||.||..-
T Consensus 20 ~~~~~C~IC~~~~~-~p~~~~~Cg-H~FC~~Ci~~~~~~~-----~~~CP~Cr~~~ 68 (100)
T 3lrq_A 20 AEVFRCFICMEKLR-DARLCPHCS-KLCCFSCIRRWLTEQ-----RAQCPHCRAPL 68 (100)
T ss_dssp HHHTBCTTTCSBCS-SEEECTTTC-CEEEHHHHHHHHHHT-----CSBCTTTCCBC
T ss_pred CCCCCCccCCcccc-CccccCCCC-ChhhHHHHHHHHHHC-----cCCCCCCCCcC
Confidence 34567999987654 356778999 999999999998532 16899999854
No 38
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=89.02 E-value=0.17 Score=43.31 Aligned_cols=37 Identities=32% Similarity=0.430 Sum_probs=26.3
Q ss_pred eEEEeecCceeEecCCCccccccccccceecccccCc
Q 002348 840 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 876 (933)
Q Consensus 840 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 876 (933)
=++.=..||+++||+|.||+++|...---+.+-+++|
T Consensus 67 ~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~v~~p 103 (105)
T 1v70_A 67 EEALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAP 103 (105)
T ss_dssp EEEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEES
T ss_pred EEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEeCC
Confidence 3556679999999999999999986432233344444
No 39
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=88.72 E-value=0.33 Score=43.88 Aligned_cols=59 Identities=27% Similarity=0.359 Sum_probs=40.2
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002348 812 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 877 (933)
Q Consensus 812 v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 877 (933)
..|| ++|-+|+-.-.- ++-|..-++.=..||+|+||+|.||.++|... --+.+.+++|-
T Consensus 57 H~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~-~~~~l~v~~p~ 115 (126)
T 4e2g_A 57 HEHP-HEQAGVMLEGTL-----ELTIGEETRVLRPGMAYTIPGGVRHRARTFED-GCLVLDIFSPP 115 (126)
T ss_dssp ECCS-SEEEEEEEEECE-----EEEETTEEEEECTTEEEEECTTCCEEEECCTT-CEEEEEEEESC
T ss_pred ccCC-CceEEEEEEeEE-----EEEECCEEEEeCCCCEEEECCCCcEEeEECCC-CEEEEEEECCC
Confidence 3556 466666544322 23344556777899999999999999999988 33455666664
No 40
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=88.55 E-value=0.32 Score=40.19 Aligned_cols=48 Identities=27% Similarity=0.582 Sum_probs=33.7
Q ss_pred ccCCCCccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 196 ELERIKCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 196 k~~~~~CHQCrqkt-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
......|.-|...- ....+....|+ ..||..||..|... ...||.||.
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~-H~fc~~Ci~~~~~~------~~~CP~Cr~ 59 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCM-HLFHQVCVDQWLIT------NKKCPICRV 59 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTS-CEEEHHHHHHHHHH------CSBCTTTCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCC-CHHHHHHHHHHHHc------CCCCcCcCc
Confidence 35566788887543 22334555798 88999999999742 346999986
No 41
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=88.49 E-value=0.21 Score=39.34 Aligned_cols=46 Identities=17% Similarity=0.479 Sum_probs=33.6
Q ss_pred CCCCccccccCC--CCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 198 ERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 198 ~~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
....|--|...- ....+....|+ ..||..||..|... ...||.||.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~ 51 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCG-HLLHRTCYEEMLKE------GYRCPLCSG 51 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTS-CEEETTHHHHHHHH------TCCCTTSCC
T ss_pred CCCcCcccChhhcCCCcCeEecCCC-CcccHHHHHHHHHc------CCcCCCCCC
Confidence 345688887653 22345667798 89999999999742 278999986
No 42
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=87.87 E-value=0.19 Score=44.99 Aligned_cols=36 Identities=8% Similarity=0.132 Sum_probs=28.3
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceec
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVA 870 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVA 870 (933)
+.|..=++.=..||+++||||.||.++|...|.=+.
T Consensus 71 ~~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~ 106 (114)
T 2ozj_A 71 ITFDDQKIDLVPEDVLMVPAHKIHAIAGKGRFKMLQ 106 (114)
T ss_dssp EEETTEEEEECTTCEEEECTTCCBEEEEEEEEEEEE
T ss_pred EEECCEEEEecCCCEEEECCCCcEEEEeCCCcEEEE
Confidence 445555677789999999999999999986654433
No 43
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=87.85 E-value=0.2 Score=54.59 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=34.0
Q ss_pred EEEeecCceeEecCCCccccccccccceecccccCc-cchHH
Q 002348 841 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP-ENVDE 881 (933)
Q Consensus 841 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP-EnV~e 881 (933)
++.=+.||+||||||.||+++|.... +..+=|.+| ..++.
T Consensus 292 ~~~l~~Gd~~~iPag~~h~~~~~~~~-~~~l~~~~g~~g~~~ 332 (350)
T 1juh_A 292 ATELGSGDVAFIPGGVEFKYYSEAYF-SKVLFVSSGSDGLDQ 332 (350)
T ss_dssp CEEECTTCEEEECTTCCEEEEESSSS-EEEEEEEESSSSHHH
T ss_pred EEEeCCCCEEEECCCCCEEEEecCCe-EEEEEEecCccchhh
Confidence 44557899999999999999998776 888888888 77766
No 44
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=87.82 E-value=0.24 Score=43.48 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.5
Q ss_pred EEEeecCceeEecCCCccccccccc
Q 002348 841 TFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 841 tf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
++.=..||+|+||||.||+++|.-+
T Consensus 60 ~~~l~~Gd~~~~p~~~~H~~~N~g~ 84 (97)
T 2fqp_A 60 TSQLTRGVSYTRPEGVEHNVINPSD 84 (97)
T ss_dssp EEEECTTCCEEECTTCEEEEECCSS
T ss_pred EEEEcCCCEEEeCCCCcccCEeCCC
Confidence 4555779999999999999999864
No 45
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.79 E-value=0.26 Score=41.77 Aligned_cols=54 Identities=20% Similarity=0.464 Sum_probs=35.9
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCccc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 253 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~CN 253 (933)
.....|--|...-...++ ..|+ ..||..||..|+.......-...||.||....
T Consensus 17 ~~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLS--LDCG-HSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCTTTCSCCSSCBC--CSSS-CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred cCCCCCCCCCcccCCcee--CCCC-CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 345678888876544332 2698 89999999999743111123578999987543
No 46
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=87.75 E-value=0.32 Score=50.85 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=52.6
Q ss_pred ccCCcccCccccCHHHHHHHHHHh--------Cccce----------EEEeecCceeEecCCCccccccccccc-eeccc
Q 002348 812 VIHPIHDQCFYLSSEHKKKLKEEF--------GVEPW----------TFEQKLGEAVFIPAGCPHQVRNLKSCT-KVAVD 872 (933)
Q Consensus 812 v~dPIHDQ~fYLt~ehk~rLkEEy--------GVepW----------tf~Q~lGEAVFIPAGCPHQVRNLkSCI-KVAlD 872 (933)
..||-.+..||+-.-.-. + .. |-+|| ++.=..||.||||+|+||..+|.-.-- ++.+=
T Consensus 59 H~H~~~~E~~yVLeG~~~-~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~H~~~N~~~~~~~~~l~ 135 (239)
T 2xlg_A 59 HIHYFINEWFWTPEGGIE-L--FHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGFVNPTDKTLPIVFV 135 (239)
T ss_dssp EEESSEEEEEEETTCCCE-E--EEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEEEEEECCSSSCEEEEEE
T ss_pred eECCCccEEEEEEEeEEE-E--EEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEE
Confidence 456666677776544221 1 12 44566 788889999999999999999976532 33133
Q ss_pred cc----------CccchHHHHHHHHHhh
Q 002348 873 FV----------SPENVDECLRLTKEFR 890 (933)
Q Consensus 873 FV----------SPEnV~eC~rLteEfR 890 (933)
++ +|..+.++++...+..
T Consensus 136 ~~~~~~~~~~~~~p~~~e~~f~~l~~~~ 163 (239)
T 2xlg_A 136 WMRNEVAPDFPYHDGGMREYFQAVGPRI 163 (239)
T ss_dssp EEECSSCTTCSCTTCSHHHHHHHHSCBC
T ss_pred EEecccChhhccCcchHHHHHHHhhhhc
Confidence 34 8888999998887653
No 47
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=87.60 E-value=0.17 Score=41.69 Aligned_cols=33 Identities=27% Similarity=0.863 Sum_probs=28.3
Q ss_pred cccccCccccccccccccCcC-CcccchhchHHhh
Q 002348 328 RVYCNHCATSIIDLHRSCPKC-SYELCLTCCKEIC 361 (933)
Q Consensus 328 RvyCDnCkTSI~D~HRSC~~C-sYDLCL~CC~ELR 361 (933)
.+.||+|...| -.-..|..| .||||..|...-.
T Consensus 6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~ 39 (52)
T 1tot_A 6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKS 39 (52)
T ss_dssp CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHHC
T ss_pred EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCCC
Confidence 47899999996 677889999 6999999988754
No 48
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=87.50 E-value=0.27 Score=42.46 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=23.0
Q ss_pred EEEeecCceeEecCCCccccccccccce
Q 002348 841 TFEQKLGEAVFIPAGCPHQVRNLKSCTK 868 (933)
Q Consensus 841 tf~Q~lGEAVFIPAGCPHQVRNLkSCIK 868 (933)
++.=..||+|+||+|.+|+++|...|.=
T Consensus 69 ~~~l~~Gd~~~ip~~~~H~~~~~~~~~~ 96 (102)
T 3d82_A 69 NITLQAGEMYVIPKGVEHKPMAKEECKI 96 (102)
T ss_dssp EEEEETTEEEEECTTCCBEEEEEEEEEE
T ss_pred EEEEcCCCEEEECCCCeEeeEcCCCCEE
Confidence 4555789999999999999999865543
No 49
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.48 E-value=0.72 Score=36.49 Aligned_cols=45 Identities=24% Similarity=0.803 Sum_probs=32.3
Q ss_pred CCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCC
Q 002348 198 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFC 248 (933)
Q Consensus 198 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 248 (933)
....|--|...-...++ ..|+ ..||..||..|+... .....||.|
T Consensus 14 ~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~~---~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVI--IECG-HNFCKACITRWWEDL---ERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCC--CSSC-CCCCHHHHHHHTTSS---CCSCCCSCC
T ss_pred cCCCCccCCcccCccEe--CCCC-CccCHHHHHHHHHhc---CCCCCCCCC
Confidence 45678888766544333 4698 889999999997642 235689998
No 50
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=87.07 E-value=0.21 Score=46.09 Aligned_cols=37 Identities=30% Similarity=0.814 Sum_probs=31.2
Q ss_pred CCCcccccCccc-cccccccccCcC-CcccchhchHHhh
Q 002348 325 NDERVYCNHCAT-SIIDLHRSCPKC-SYELCLTCCKEIC 361 (933)
Q Consensus 325 ~DERvyCDnCkT-SI~D~HRSC~~C-sYDLCL~CC~ELR 361 (933)
.-..+.||.|.. +|.-+-..|..| .||||..|...-+
T Consensus 28 ~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~ 66 (98)
T 2dip_A 28 KHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC 66 (98)
T ss_dssp SCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS
T ss_pred ccCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC
Confidence 334589999996 799999999999 7999999977643
No 51
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.98 E-value=0.26 Score=40.61 Aligned_cols=46 Identities=17% Similarity=0.545 Sum_probs=32.5
Q ss_pred CCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 198 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 198 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
....|--|...-...++ ..|+ ..||..||..|.. .....||.||..
T Consensus 14 ~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~-----~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQ--TECG-HRFCESCMAALLS-----SSSPKCTACQES 59 (66)
T ss_dssp CCEECTTTCCEESSCCC--CSSS-CCCCHHHHHHHHT-----TSSCCCTTTCCC
T ss_pred cCCCCCCCChHhcCeeE--CCCC-CHHHHHHHHHHHH-----hCcCCCCCCCcC
Confidence 34567777755443333 4799 8899999999985 223579999864
No 52
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=86.84 E-value=0.34 Score=42.30 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=29.0
Q ss_pred cceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002348 838 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 877 (933)
Q Consensus 838 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 877 (933)
..=++.=..||+++||+|.||+.+|..+---+.+-+++|.
T Consensus 60 ~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~~~~ 99 (113)
T 2gu9_A 60 DGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYHPP 99 (113)
T ss_dssp TTEEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEESC
T ss_pred CCEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCC
Confidence 3445677899999999999999999865433344445554
No 53
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=86.84 E-value=0.76 Score=40.75 Aligned_cols=46 Identities=22% Similarity=0.623 Sum_probs=33.9
Q ss_pred CCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 198 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 198 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
....|--|...-... +....|+ ..||..||..|... ...||.||..
T Consensus 21 ~~~~C~IC~~~~~~p-~~~~~Cg-H~fC~~Ci~~~~~~------~~~CP~Cr~~ 66 (99)
T 2y43_A 21 DLLRCGICFEYFNIA-MIIPQCS-HNYCSLCIRKFLSY------KTQCPTCCVT 66 (99)
T ss_dssp HHTBCTTTCSBCSSE-EECTTTC-CEEEHHHHHHHHTT------CCBCTTTCCB
T ss_pred CCCCcccCChhhCCc-CEECCCC-CHhhHHHHHHHHHC------CCCCCCCCCc
Confidence 456788887665443 3345799 89999999999863 2589999874
No 54
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.75 E-value=0.25 Score=42.00 Aligned_cols=34 Identities=29% Similarity=0.798 Sum_probs=30.1
Q ss_pred ccccCccc-cccccccccCcC-CcccchhchHHhhc
Q 002348 329 VYCNHCAT-SIIDLHRSCPKC-SYELCLTCCKEICE 362 (933)
Q Consensus 329 vyCDnCkT-SI~D~HRSC~~C-sYDLCL~CC~ELR~ 362 (933)
+.||.|.. +|.-+-..|..| .||||..|...-+.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~ 47 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHA 47 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCc
Confidence 88999996 599999999999 79999999987553
No 55
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=86.72 E-value=0.22 Score=45.34 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=25.8
Q ss_pred ceEEEeecCceeEecCCCcccccccccccee
Q 002348 839 PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKV 869 (933)
Q Consensus 839 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKV 869 (933)
.-++.=..||+|+||+|.||+.+|....-|+
T Consensus 67 g~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~ 97 (101)
T 1o5u_A 67 GKKYVIEKGDLVTFPKGLRCRWKVLEPVRKH 97 (101)
T ss_dssp CCEEEEETTCEEEECTTCEEEEEEEEEEEEE
T ss_pred CCEEEECCCCEEEECCCCcEEEEeCCCeeEE
Confidence 4567778999999999999999998765543
No 56
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=86.49 E-value=0.39 Score=46.80 Aligned_cols=41 Identities=24% Similarity=0.173 Sum_probs=29.5
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002348 837 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 877 (933)
Q Consensus 837 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 877 (933)
|..=++.=..||+||||+|++|+++|..+---+-+-+++|+
T Consensus 79 v~g~~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~~~~ 119 (156)
T 3kgz_A 79 VGETISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCVVNAA 119 (156)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEECCSSSCEEEEEEEESS
T ss_pred ECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEeCC
Confidence 44446667789999999999999999876433344444544
No 57
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=86.38 E-value=0.34 Score=47.44 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=39.7
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCcccccccc-ccceecccccCcc
Q 002348 812 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLK-SCTKVAVDFVSPE 877 (933)
Q Consensus 812 v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLk-SCIKVAlDFVSPE 877 (933)
..|+ ++|-+|+-.-.- ++-|..=++.=..||+||||+|.||+++|.. +---+.+-+++|+
T Consensus 72 H~H~-~~E~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~ 132 (167)
T 3ibm_A 72 ERHE-HTHVVMVVRGHA-----EVVLDDRVEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSD 132 (167)
T ss_dssp BBCS-SCEEEEEEESEE-----EEEETTEEEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEEESS
T ss_pred ccCC-CcEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeCC
Confidence 4566 677676654332 2334555777789999999999999999987 4333333445554
No 58
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.38 E-value=0.44 Score=39.97 Aligned_cols=47 Identities=21% Similarity=0.504 Sum_probs=34.3
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.....|--|...-.. .+.-..|+ ..||..||..|... ...||.||..
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~~Cg-H~fC~~Ci~~~~~~------~~~CP~Cr~~ 59 (72)
T 2djb_A 13 TPYILCSICKGYLID-ATTITECL-HTFCKSCIVRHFYY------SNRCPKCNIV 59 (72)
T ss_dssp CGGGSCTTTSSCCSS-CEECSSSC-CEECHHHHHHHHHH------CSSCTTTCCC
T ss_pred CCCCCCCCCChHHHC-cCEECCCC-CHHHHHHHHHHHHc------CCcCCCcCcc
Confidence 345678888765443 33445799 89999999999842 4689999874
No 59
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=85.72 E-value=0.71 Score=39.02 Aligned_cols=48 Identities=23% Similarity=0.617 Sum_probs=32.6
Q ss_pred cCCCCccccccCCC-CceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSER-KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.....|.-|...-. ...+.-..|+ ..||..||..|... ...||.||..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 61 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCN-HLFHDSCIVPWLEQ------HDSCPVCRKS 61 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTS-CEEETTTTHHHHTT------TCSCTTTCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCC-CeecHHHHHHHHHc------CCcCcCcCCc
Confidence 34567888865532 1223333588 88999999999853 2489999874
No 60
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=85.31 E-value=0.3 Score=50.23 Aligned_cols=59 Identities=22% Similarity=0.195 Sum_probs=40.6
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002348 813 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 877 (933)
Q Consensus 813 ~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 877 (933)
.|| +.|-+|+..-.- ++-|..=++.=..||+|+||+|+||+++|.-.---+.++.++|-
T Consensus 163 ~H~-~~e~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~p~ 221 (243)
T 3h7j_A 163 KHR-NEQIGICIGGGY-----DMTVEGCTVEMKFGTAYFCEPREDHGAINRSEKESKSINIFFPP 221 (243)
T ss_dssp CCS-SEEEEEECSSCE-----EEEETTEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEEESC
T ss_pred eCC-CcEEEEEEECEE-----EEEECCEEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcCC
Confidence 555 566667654422 23444446667899999999999999999866544556666664
No 61
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.96 E-value=0.8 Score=37.20 Aligned_cols=46 Identities=28% Similarity=0.599 Sum_probs=32.8
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCC
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFC 248 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 248 (933)
.....|--|...-...++. .|+ ..||..||.+|... ......||.|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~--~Cg-H~fC~~Ci~~~~~~---~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTI--DCG-HNFCLKCITQIGET---SCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEEC--TTS-SEECHHHHHHHHHH---CSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEe--CCC-CcchHHHHHHHHHc---CCCCCcCcCC
Confidence 3456788888665544443 799 89999999999852 1234589988
No 62
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=84.83 E-value=0.37 Score=40.58 Aligned_cols=53 Identities=19% Similarity=0.456 Sum_probs=35.9
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCc-hhhhhccCCCCCCcc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMS-ELDVAEICPFCRRNC 252 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~-~edv~~~CP~CRg~C 252 (933)
.....|--|...-...++ ..|+ ..||..||..|+.... .......||.||...
T Consensus 10 ~~~~~C~IC~~~~~~p~~--l~Cg-H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLS--LDCG-HSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCCCEETTTTEECSSCCC--CSSS-CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred ccCCCCcCCCcccCCeeE--CCCC-CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 345678888765443333 3699 8999999999986421 112356899998754
No 63
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=84.67 E-value=0.55 Score=39.73 Aligned_cols=48 Identities=25% Similarity=0.573 Sum_probs=33.6
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
.....|--|...-...++ -..|+ ..||..||..|.... -...||.||.
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~~Cg-H~fC~~Ci~~~~~~~----~~~~CP~Cr~ 60 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVV-IPCCG-NSYCDECIRTALLES----DEHTCPTCHQ 60 (74)
T ss_dssp CGGGSCSSSCCCCTTCEE-CSSSC-CEECTTHHHHHHHHS----SSSCCSSSCC
T ss_pred CCCCCCcCCChHHhCCeE-cCCCC-CHHHHHHHHHHHHhc----CCCcCCCCCC
Confidence 345678888765554443 33499 899999999998521 1358999988
No 64
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=84.56 E-value=1.3 Score=39.83 Aligned_cols=47 Identities=19% Similarity=0.518 Sum_probs=35.0
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.....|--|...-.. -+....|+ ..||..||..|.... ..||.||..
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~~Cg-H~fC~~Ci~~~~~~~------~~CP~Cr~~ 59 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID-ATTIIECL-HSFCKTCIVRYLETS------KYCPICDVQ 59 (108)
T ss_dssp GGGTBCTTTSSBCSS-EEEETTTC-CEEEHHHHHHHHTSC------SBCTTTCCB
T ss_pred CCcCCCccCChHHhC-cCEeCCCC-ChhhHHHHHHHHHhC------CcCcCCCcc
Confidence 345678888765544 34445799 999999999998642 689999874
No 65
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=84.50 E-value=0.29 Score=44.24 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.3
Q ss_pred EeecCceeEecCCCccccccccc
Q 002348 843 EQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 843 ~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
.=..||++++|||.+|+++|--+
T Consensus 62 ~l~aGd~~~~p~G~~H~~~N~g~ 84 (98)
T 2ozi_A 62 QLKTGRSYARKAGVQHDVRNEST 84 (98)
T ss_dssp CBCTTCCEEECTTCEEEEEECSS
T ss_pred EECCCCEEEECCCCceeCEECCC
Confidence 34689999999999999999765
No 66
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=84.12 E-value=0.57 Score=41.34 Aligned_cols=48 Identities=23% Similarity=0.540 Sum_probs=34.0
Q ss_pred cCCCCccccccCCC-CceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSER-KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
+....|.-|...-. +..+....|+ ..||..||..|... ...||.||..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~-H~Fh~~Ci~~wl~~------~~~CP~Cr~~ 86 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCH-HYFHKPCVSIWLQK------SGTCPVCRCM 86 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTT-EEEEHHHHHHHHTT------TCBCTTTCCB
T ss_pred CCCCCCcccChhhcCCCcEEecCCC-ChHHHHHHHHHHHc------CCcCcCcCcc
Confidence 45667889975432 2234444599 89999999999853 2489999863
No 67
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=84.05 E-value=0.64 Score=42.46 Aligned_cols=48 Identities=21% Similarity=0.524 Sum_probs=33.3
Q ss_pred cCCCCccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCC
Q 002348 197 LERIKCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 249 (933)
Q Consensus 197 ~~~~~CHQCrqkt-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 249 (933)
.....| .|++.. .+.++.|-.|. .-|=..|+.--....+ -.|.||.|+
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~-~w~H~~C~~~~~~~~p---~~w~C~~C~ 74 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCS-VWQHIDCMGIDRQHIP---DTYLCERCQ 74 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTC-BEEETTTTTCCTTSCC---SSBCCTTTS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCC-CcCcCcCCCCCccCCC---CCEECCCCc
Confidence 445678 688776 47789999999 6677778753222221 269999996
No 68
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=84.01 E-value=0.77 Score=37.69 Aligned_cols=47 Identities=21% Similarity=0.686 Sum_probs=33.4
Q ss_pred CCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCcc
Q 002348 198 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 252 (933)
Q Consensus 198 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 252 (933)
....|.-|...-.. .+....|+ ..||..||.+|.. ....||.||..-
T Consensus 4 ~~~~C~IC~~~~~~-~~~~~~C~-H~fc~~Ci~~~~~------~~~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDPSN-YSMALPCL-HAFCYVCITRWIR------QNPTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCCCS-CEEETTTT-EEESTTHHHHHHH------HSCSTTTTCCCC
T ss_pred CCCCCeeCCccccC-CcEecCCC-CeeHHHHHHHHHh------CcCcCcCCChhh
Confidence 35578888766443 23455799 8899999999973 235899998643
No 69
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=83.90 E-value=0.49 Score=41.82 Aligned_cols=38 Identities=18% Similarity=0.404 Sum_probs=26.5
Q ss_pred eEEEeecCceeEecCCCccccccccccceecccccCccchH
Q 002348 840 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVD 880 (933)
Q Consensus 840 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 880 (933)
=++.=..||+++||+|.||..+|...|.=+ ++.|....
T Consensus 67 ~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l---~i~~~~~~ 104 (107)
T 2i45_A 67 GSMTIREGEMAVVPKSVSHRPRSENGCSLV---LIELSDPS 104 (107)
T ss_dssp CEEEECTTEEEEECTTCCEEEEEEEEEEEE---EEECC---
T ss_pred cEEEECCCCEEEECCCCcEeeEeCCCeEEE---EEECCCcc
Confidence 366778899999999999999997654322 45555433
No 70
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=83.78 E-value=0.36 Score=47.28 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=33.3
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceecccccCccc
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 878 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 878 (933)
+.|..=++.=..||+|+||+|.||+.+|.-+--- .+-++.|..
T Consensus 139 ~~~~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~~-~l~v~~~~~ 181 (192)
T 1y9q_A 139 VFFDEQWHELQQGEHIRFFSDQPHGYAAVTEKAV-FQNIVAYPR 181 (192)
T ss_dssp EEETTEEEEECTTCEEEEECSSSEEEEESSSCEE-EEEEEECCC
T ss_pred EEECCEEEEeCCCCEEEEcCCCCeEeECCCCCcE-EEEEEecCc
Confidence 4556667788899999999999999999855333 666777654
No 71
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.65 E-value=1.9 Score=39.26 Aligned_cols=49 Identities=18% Similarity=0.532 Sum_probs=34.7
Q ss_pred ccCCCCccccccCCCCceEecCc--CCCCcccHhHHhhhCCCCchh-hhhccCCCCCC
Q 002348 196 ELERIKCHQCMKSERKYVVPCGK--CRTKVYCIQCIKQWYPKMSEL-DVAEICPFCRR 250 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~--C~r~~FC~~CL~~rY~e~~~e-dv~~~CP~CRg 250 (933)
......| -|++...+.++.|-+ |.+.-|=..|+. ++.. .-.|.||.|+.
T Consensus 33 ~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg-----l~~~p~g~W~Cp~C~~ 84 (91)
T 1weu_A 33 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG-----LTTKPRGKWFCPRCSQ 84 (91)
T ss_dssp SCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT-----CSSCCCSSCCCTTTCC
T ss_pred CCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC-----cCcCCCCCEECcCccC
Confidence 3566788 899987788999999 765556666665 2221 24699999965
No 72
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=83.33 E-value=0.43 Score=45.70 Aligned_cols=25 Identities=28% Similarity=0.237 Sum_probs=23.1
Q ss_pred eEEEeecCceeEecCCCcccccccc
Q 002348 840 WTFEQKLGEAVFIPAGCPHQVRNLK 864 (933)
Q Consensus 840 Wtf~Q~lGEAVFIPAGCPHQVRNLk 864 (933)
-++.=..||+|+||+|.||+++|..
T Consensus 88 ~~~~l~~Gd~i~ip~~~~H~~~n~~ 112 (163)
T 1lr5_A 88 QEIPFFQNTTFSIPVNDPHQVWNSD 112 (163)
T ss_dssp EEEEECTTEEEEECTTCCEEEECCC
T ss_pred EEEEeCCCCEEEECCCCcEEeEeCC
Confidence 6778889999999999999999986
No 73
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.25 E-value=1.1 Score=37.53 Aligned_cols=47 Identities=17% Similarity=0.617 Sum_probs=31.2
Q ss_pred cCCCCccccccCCC-CceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 197 LERIKCHQCMKSER-KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 197 ~~~~~CHQCrqkt~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
.....|--|...-. ...+.-..|+ ..||..||..|... ...||.||.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-H~f~~~Ci~~~~~~------~~~CP~Cr~ 60 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCK-HAFHRKCLIKWLEV------RKVCPLCNM 60 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTT-EEEEHHHHHHHHHH------CSBCTTTCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCC-CEecHHHHHHHHHc------CCcCCCcCc
Confidence 34557888876632 1122222588 88999999999742 248999986
No 74
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=82.62 E-value=0.66 Score=43.85 Aligned_cols=25 Identities=40% Similarity=0.375 Sum_probs=21.9
Q ss_pred EEEeecCceeEecCCCccccccccc
Q 002348 841 TFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 841 tf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
++.=..||+|+||+|.||+++|..+
T Consensus 89 ~~~l~~Gd~i~ip~g~~H~~~n~~~ 113 (148)
T 2oa2_A 89 QEEVFDDYAILIPAGTWHNVRNTGN 113 (148)
T ss_dssp EEEEETTCEEEECTTCEEEEEECSS
T ss_pred eEEECCCCEEEECCCCcEEEEECCC
Confidence 3677899999999999999999854
No 75
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=82.60 E-value=0.26 Score=47.43 Aligned_cols=47 Identities=19% Similarity=0.519 Sum_probs=34.6
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.....|--|..--...++ ..|+ -.||..||..|... -...||.||.-
T Consensus 29 ~~~~~C~IC~~~~~~pv~--~~Cg-H~FC~~Ci~~~~~~-----~~~~CP~Cr~~ 75 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQ--AQCG-HRYCSFCLASILSS-----GPQNCAACVHE 75 (141)
T ss_dssp CGGGBCTTTCSBCSSEEE--CTTS-CEEEHHHHHHHGGG-----SCEECHHHHHT
T ss_pred CcCcCCCCCChhhcCcEE--CCCC-CccCHHHHHHHHhc-----CCCCCCCCCCc
Confidence 456789999876655544 4899 99999999999842 23478888763
No 76
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=82.34 E-value=0.69 Score=44.11 Aligned_cols=41 Identities=20% Similarity=0.136 Sum_probs=30.6
Q ss_pred ccceEEEeecCceeEecCC-CccccccccccceecccccCcc
Q 002348 837 VEPWTFEQKLGEAVFIPAG-CPHQVRNLKSCTKVAVDFVSPE 877 (933)
Q Consensus 837 VepWtf~Q~lGEAVFIPAG-CPHQVRNLkSCIKVAlDFVSPE 877 (933)
|..=++.=..||+|+||+| .+|+++|.-+---+.+-+.+|-
T Consensus 83 ~~~~~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~v~~p~ 124 (162)
T 3l2h_A 83 MENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQRL 124 (162)
T ss_dssp ETTEEEEECTTCEEEECTTSCCEEEECCSSSCEEEEEEEECC
T ss_pred ECCEEEEeCCCCEEEECCCCceEEeEeCCCCCEEEEEEECCC
Confidence 3444677789999999998 9999999766544455555553
No 77
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=82.09 E-value=0.83 Score=41.60 Aligned_cols=46 Identities=30% Similarity=0.695 Sum_probs=33.5
Q ss_pred CCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 198 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 198 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
....|.-|...-...++. .|+ ..||..||..|.... ...||.||..
T Consensus 14 ~~~~C~iC~~~~~~p~~~--~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~ 59 (115)
T 3l11_A 14 SECQCGICMEILVEPVTL--PCN-HTLCKPCFQSTVEKA-----SLCCPFCRRR 59 (115)
T ss_dssp HHHBCTTTCSBCSSCEEC--TTS-CEECHHHHCCCCCTT-----TSBCTTTCCB
T ss_pred CCCCCccCCcccCceeEc--CCC-CHHhHHHHHHHHhHC-----cCCCCCCCcc
Confidence 346788888665544443 799 899999999998531 3689999873
No 78
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=82.08 E-value=0.55 Score=42.69 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=24.4
Q ss_pred ccceEEEeecCceeEecCCCccccccccc
Q 002348 837 VEPWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 837 VepWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
|..-++.=..||+|+||+|.||+.+|..+
T Consensus 63 i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~ 91 (125)
T 3cew_A 63 IDGEKIELQAGDWLRIAPDGKRQISAASD 91 (125)
T ss_dssp ETTEEEEEETTEEEEECTTCCEEEEEBTT
T ss_pred ECCEEEEeCCCCEEEECCCCcEEEEcCCC
Confidence 44556777899999999999999999843
No 79
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=81.71 E-value=0.58 Score=46.06 Aligned_cols=30 Identities=23% Similarity=0.008 Sum_probs=24.5
Q ss_pred CccceEEEeecCceeEecCCCccccccccc
Q 002348 836 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 836 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
-|..=++.=..||+||||+|.||+++|...
T Consensus 87 ~v~g~~~~l~~GD~i~ip~g~~H~~~n~~~ 116 (166)
T 3jzv_A 87 MVGRAVSAVAPYDLVTIPGWSWHQFRAPAD 116 (166)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEECCTT
T ss_pred EECCEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 344446777889999999999999999754
No 80
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=81.49 E-value=1.1 Score=37.70 Aligned_cols=47 Identities=17% Similarity=0.386 Sum_probs=34.9
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.....|--|..--...++. .|+ ..||..||..|... -...||.||..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~--~Cg-H~fc~~Ci~~~~~~-----~~~~CP~C~~~ 52 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIV--STG-QTYERSSIQKWLDA-----GHKTCPKSQET 52 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEE--TTT-EEEEHHHHHHHHTT-----TCCBCTTTCCB
T ss_pred cccCCCCCccccccCCEEc--CCC-CeecHHHHHHHHHH-----CcCCCCCCcCC
Confidence 3456788888765554443 699 99999999999953 14589999864
No 81
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=81.32 E-value=0.65 Score=42.95 Aligned_cols=47 Identities=21% Similarity=0.564 Sum_probs=34.1
Q ss_pred CCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCcc
Q 002348 198 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 252 (933)
Q Consensus 198 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 252 (933)
....|.-|...-...++ ..|+ ..||..||..|... -...||.||...
T Consensus 51 ~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 51 ETFQCICCQELVFRPIT--TVCQ-HNVCKDCLDRSFRA-----QVFSCPACRYDL 97 (124)
T ss_dssp HHTBCTTTSSBCSSEEE--CTTS-CEEEHHHHHHHHHT-----TCCBCTTTCCBC
T ss_pred cCCCCCcCChHHcCcEE--eeCC-CcccHHHHHHHHhH-----CcCCCCCCCccC
Confidence 34678888866554443 3799 89999999999852 234899999754
No 82
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=81.27 E-value=1.1 Score=38.11 Aligned_cols=42 Identities=29% Similarity=0.653 Sum_probs=31.7
Q ss_pred cCCCCccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.....|--|.......++ ..|+ .. ||..|+.+| ..||.||..
T Consensus 22 ~~~~~C~iC~~~~~~~~~--~pCg-H~~~C~~C~~~~----------~~CP~Cr~~ 64 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVF--VPCG-HLVTCKQCAEAV----------DKCPMCYTV 64 (74)
T ss_dssp HHHTBCTTTSSSBCCEEE--ETTC-CBCCCHHHHTTC----------SBCTTTCCB
T ss_pred ccCCCCCCCCCCCCCEEE--cCCC-ChhHHHHhhhcC----------ccCCCcCcC
Confidence 345689999877654443 3688 65 999999987 689999963
No 83
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=81.22 E-value=0.63 Score=42.72 Aligned_cols=29 Identities=21% Similarity=0.106 Sum_probs=23.7
Q ss_pred ccceEEEeecCceeEecCCCccccccccc
Q 002348 837 VEPWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 837 VepWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
|..=++.=..||+|+||+|.||+.+|..+
T Consensus 83 i~~~~~~l~~Gd~i~ip~g~~H~~~~~~~ 111 (126)
T 1vj2_A 83 KEQGEETVEEGFYIFVEPNEIHGFRNDTD 111 (126)
T ss_dssp CSSCEEEEETTEEEEECTTCCEEEECCSS
T ss_pred ECCEEEEECCCCEEEECCCCcEEeEeCCC
Confidence 34445666789999999999999999864
No 84
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=80.85 E-value=0.71 Score=45.40 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=41.4
Q ss_pred CCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCccchH
Q 002348 814 HPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVD 880 (933)
Q Consensus 814 dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 880 (933)
|.=+|+.+|+-.-.- ++-|.+=++.=..||+||||+|.||..+|...|..+++ +.|-+..
T Consensus 81 ~~~~eE~~yVLeG~~-----~l~i~g~~~~l~~GD~i~iP~G~~h~~~n~~~a~~l~V--~~P~~~~ 140 (151)
T 4axo_A 81 TLNYDEIDYVIDGTL-----DIIIDGRKVSASSGELIFIPKGSKIQFSVPDYARFIYV--TYPADWA 140 (151)
T ss_dssp ECSSEEEEEEEEEEE-----EEEETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEE--EECSCC-
T ss_pred eCCCcEEEEEEEeEE-----EEEECCEEEEEcCCCEEEECCCCEEEEEeCCCEEEEEE--ECCCCcc
Confidence 444667777544221 12345557788899999999999999999988877776 4455443
No 85
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=80.81 E-value=0.69 Score=41.50 Aligned_cols=47 Identities=21% Similarity=0.698 Sum_probs=33.1
Q ss_pred CCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 199 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 199 ~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
...|--|...-...++ ..|+ ..||..||..|.... .....||.||..
T Consensus 21 ~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~~---~~~~~CP~Cr~~ 67 (112)
T 1jm7_A 21 ILECPICLELIKEPVS--TKCD-HIFCKFCMLKLLNQK---KGPSQCPLCKND 67 (112)
T ss_dssp HTSCSSSCCCCSSCCB--CTTS-CCCCSHHHHHHHHSS---SSSCCCTTTSCC
T ss_pred CCCCcccChhhcCeEE--CCCC-CHHHHHHHHHHHHhC---CCCCCCcCCCCc
Confidence 4578888765443333 4699 899999999998532 123589999874
No 86
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=80.76 E-value=0.89 Score=43.92 Aligned_cols=52 Identities=17% Similarity=0.479 Sum_probs=40.2
Q ss_pred ccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchh-----hhhccCCCCCC
Q 002348 196 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSEL-----DVAEICPFCRR 250 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~e-----dv~~~CP~CRg 250 (933)
++....|..|... +.++-|.+|. ..||..||..-.+.-... +-.|.|+.|+-
T Consensus 54 Dg~~~~C~vC~dG--G~LlcCd~Cp-r~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG--GNLICCDFCH-NAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC--SEEEECSSSS-CEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC--CeeEecCCCc-hhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 5667789999966 6699999999 899999999876533222 33599999954
No 87
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=80.58 E-value=0.82 Score=44.31 Aligned_cols=48 Identities=21% Similarity=0.622 Sum_probs=35.3
Q ss_pred CCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCcc
Q 002348 198 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 252 (933)
Q Consensus 198 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 252 (933)
...+|--|...-.. .+.+..|+ ..||..||..|... -...||.||...
T Consensus 53 ~~~~C~IC~~~~~~-p~~~~~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 53 SELMCPICLDMLKN-TMTTKECL-HRFCADCIITALRS-----GNKECPTCRKKL 100 (165)
T ss_dssp HHHBCTTTSSBCSS-EEEETTTC-CEEEHHHHHHHHHT-----TCCBCTTTCCBC
T ss_pred CCCCCcccChHhhC-cCEeCCCC-ChhHHHHHHHHHHh-----CcCCCCCCCCcC
Confidence 34589999755443 45556899 89999999999752 145799999854
No 88
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.26 E-value=0.59 Score=38.70 Aligned_cols=44 Identities=27% Similarity=0.807 Sum_probs=32.5
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
.....|--|...-.. .-..|+ ..||..||..|... ...||.||.
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~ 56 (70)
T 2ecn_A 13 TDEEECCICMDGRAD---LILPCA-HSFCQKCIDKWSDR------HRNCPICRL 56 (70)
T ss_dssp CCCCCCSSSCCSCCS---EEETTT-EEECHHHHHHSSCC------CSSCHHHHH
T ss_pred CCCCCCeeCCcCccC---cccCCC-CcccHHHHHHHHHC------cCcCCCcCC
Confidence 445678888877655 223588 78999999999862 457998875
No 89
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=80.22 E-value=1.4 Score=37.65 Aligned_cols=50 Identities=16% Similarity=0.343 Sum_probs=37.4
Q ss_pred ccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 196 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
...+..|..|++. +.++.|-.|. ..|=..||.-.-..+. +-.|.||.|..
T Consensus 9 ~~~~~~C~vC~~~--~~ll~Cd~C~-~~~H~~Cl~P~l~~~P--~g~W~C~~C~~ 58 (66)
T 2lri_C 9 LAPGARCGVCGDG--TDVLRCTHCA-AAFHWRCHFPAGTSRP--GTGLRCRSCSG 58 (66)
T ss_dssp CCTTCCCTTTSCC--TTCEECSSSC-CEECHHHHCTTTCCCC--SSSCCCTTTTT
T ss_pred CCCCCCcCCCCCC--CeEEECCCCC-CceecccCCCccCcCC--CCCEECccccC
Confidence 3456679999865 4589999999 8899999975444333 23599999975
No 90
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=80.04 E-value=0.87 Score=45.40 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=30.9
Q ss_pred cceEEEeecCceeEecCCCccccccccccceecccccCcc
Q 002348 838 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 877 (933)
Q Consensus 838 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 877 (933)
+.+++.=..||+|+||+|.||+.+|.-+--=+.+.+++|.
T Consensus 117 ~~~~~~l~~GD~v~ip~g~~H~~~N~g~~~~~~l~v~~~~ 156 (190)
T 1x82_A 117 DAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYPAD 156 (190)
T ss_dssp CEEEEEECTTCEEEECTTCEEEEEECSSSCEEEEEEEETT
T ss_pred cEEEEEECCCcEEEECCCCeEEEEECCcccEEEEEEECCC
Confidence 4567888999999999999999999866433445555554
No 91
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=79.79 E-value=0.91 Score=41.61 Aligned_cols=60 Identities=23% Similarity=0.324 Sum_probs=38.8
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccc-eEEEeecCceeEecCCCccccccccccceecccccCccc
Q 002348 813 IHPIHDQCFYLSSEHKKKLKEEFGVEP-WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 878 (933)
Q Consensus 813 ~dPIHDQ~fYLt~ehk~rLkEEyGVep-Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 878 (933)
.|+-.++.+|+-.-.-. +-+.. -++.=..||+|+||+|.||..+|...-. ..+-+++|..
T Consensus 60 ~H~~~~E~~~vl~G~~~-----~~~~~~~~~~l~~Gd~~~ip~g~~H~~~~~~~~~-~~l~~~~p~~ 120 (134)
T 2o8q_A 60 THTVGFQLFYVLRGWVE-----FEYEDIGAVMLEAGGSAFQPPGVRHRELRHSDDL-EVLEIVSPAG 120 (134)
T ss_dssp EECCSCEEEEEEESEEE-----EEETTTEEEEEETTCEEECCTTCCEEEEEECTTC-EEEEEESSTT
T ss_pred ECCCCcEEEEEEeCEEE-----EEECCcEEEEecCCCEEEECCCCcEEeEeCCCCe-EEEEEECCCc
Confidence 45555666665433221 33334 5677889999999999999999965422 3344566654
No 92
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.79 E-value=2.6 Score=36.46 Aligned_cols=30 Identities=23% Similarity=0.840 Sum_probs=23.7
Q ss_pred ecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 215 PCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 215 ~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.-..|+ ..|+..||.+|.... ..||.||..
T Consensus 44 ~~~~C~-H~FH~~Ci~~Wl~~~------~~CP~CR~~ 73 (81)
T 2ecl_A 44 VWGECN-HSFHNCCMSLWVKQN------NRCPLCQQD 73 (81)
T ss_dssp EEETTS-CEEEHHHHHHHTTTC------CBCTTTCCB
T ss_pred EeCCCC-CccChHHHHHHHHhC------CCCCCcCCC
Confidence 333698 899999999998643 389999964
No 93
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=79.65 E-value=0.48 Score=39.08 Aligned_cols=50 Identities=26% Similarity=0.715 Sum_probs=34.9
Q ss_pred ccCCCCccccccCCC-----CceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCcc
Q 002348 196 ELERIKCHQCMKSER-----KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 252 (933)
Q Consensus 196 k~~~~~CHQCrqkt~-----~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 252 (933)
......|--|...-. +..+....|+ ..||..||..|... ...||.||..-
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~~ 61 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKN------ANTCPTCRKKI 61 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTS-CEEEHHHHHHHHHH------CSBCTTTCCBC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCC-ChHhHHHHHHHHHc------CCCCCCCCCcc
Confidence 455667888875422 2234556799 89999999999742 25899998743
No 94
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=79.49 E-value=2.3 Score=38.99 Aligned_cols=45 Identities=24% Similarity=0.729 Sum_probs=33.5
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
....+|--|...-...++ -..|+ ..||..||..|.. ..||.||..
T Consensus 20 ~~~~~C~IC~~~~~~pv~-~~~Cg-H~fC~~Ci~~~~~--------~~CP~Cr~~ 64 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVC-LGGCE-HIFCSNCVSDCIG--------TGCPVCYTP 64 (117)
T ss_dssp HHTTSCSSSCSCCSSCBC-CCSSS-CCBCTTTGGGGTT--------TBCSSSCCB
T ss_pred hhCCCCCCCChHhhCccE-eCCCC-CHHHHHHHHHHhc--------CCCcCCCCc
Confidence 456788888765443332 22688 9999999999985 589999986
No 95
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=79.45 E-value=0.39 Score=38.61 Aligned_cols=46 Identities=28% Similarity=0.799 Sum_probs=30.7
Q ss_pred CCCccccccCCC-----CceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 199 RIKCHQCMKSER-----KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 199 ~~~CHQCrqkt~-----~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
...|--|...-. ...+....|+ ..||..||..|... ...||.||..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 53 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKN------ANTCPTCRKK 53 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTS-CEEEHHHHHHHHHH------CSBCTTTCCB
T ss_pred CCCCCccChhhhCccccCCCEEeCCCC-CchhHHHHHHHHHc------CCCCCCCCcc
Confidence 345666654321 1233455798 88999999999742 4589999874
No 96
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.45 E-value=0.54 Score=38.38 Aligned_cols=47 Identities=28% Similarity=0.787 Sum_probs=31.9
Q ss_pred CCCCccccccCCC-----CceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 198 ERIKCHQCMKSER-----KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 198 ~~~~CHQCrqkt~-----~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
....|--|...-. ...+.-..|+ ..||..||..|... ...||.||..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 65 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKN------ANTCPTCRKK 65 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSS-CEEEHHHHHHHHHH------CSSCTTTCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCC-ChhcHHHHHHHHHc------CCCCCCCCCc
Confidence 3456777765421 1233445788 89999999999742 4589999864
No 97
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=79.30 E-value=0.84 Score=44.24 Aligned_cols=48 Identities=21% Similarity=0.539 Sum_probs=35.1
Q ss_pred CCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCccc
Q 002348 198 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 253 (933)
Q Consensus 198 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~CN 253 (933)
....|--|...-...++ ..|+ ..||..||..|... -...||.||....
T Consensus 77 ~~~~C~IC~~~~~~pv~--~~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVT--TECF-HNVCKDCLQRSFKA-----QVFSCPACRHDLG 124 (150)
T ss_dssp HHTBCTTTSSBCSSEEE--CTTS-CEEEHHHHHHHHHT-----TCCBCTTTCCBCC
T ss_pred cCCEeecCChhhcCCEE--cCCC-CchhHHHHHHHHHh-----CCCcCCCCCccCC
Confidence 34678888876555444 5799 89999999999853 2247999988543
No 98
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=79.16 E-value=0.88 Score=42.28 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=26.6
Q ss_pred ceEEEeecCceeEecCCCccccccc-cccceecccccCcc
Q 002348 839 PWTFEQKLGEAVFIPAGCPHQVRNL-KSCTKVAVDFVSPE 877 (933)
Q Consensus 839 pWtf~Q~lGEAVFIPAGCPHQVRNL-kSCIKVAlDFVSPE 877 (933)
.=++.=..||+|+||||++|..+|. ..+. .+--++|-
T Consensus 76 g~~~~l~~GD~v~ip~g~~H~~~~~~~~~~--~l~v~~P~ 113 (119)
T 3lwc_A 76 GETVTAGPGEIVYMPKGETVTIRSHEEGAL--TAYVTYPH 113 (119)
T ss_dssp TEEEEECTTCEEEECTTCEEEEEEEEEEEE--EEEEEECC
T ss_pred CEEEEECCCCEEEECCCCEEEEEcCCCCeE--EEEEECCC
Confidence 3456678999999999999999997 3333 33345553
No 99
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=78.13 E-value=1.8 Score=38.36 Aligned_cols=36 Identities=19% Similarity=0.518 Sum_probs=27.8
Q ss_pred ccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCC
Q 002348 196 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKM 236 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~ 236 (933)
+....+|..|+++---....|+ |+ ..||. .-||++.
T Consensus 22 k~~~nRC~~CrKkvgL~gf~Cr-Cg-~~FCs---~HRy~e~ 57 (74)
T 1wfl_A 22 KPKKNRCFMCRKKVGLTGFDCR-CG-NLFCG---LHRYSDK 57 (74)
T ss_dssp CSCTTBCSSSCCBCGGGCEECT-TS-CEECS---SSCSTTT
T ss_pred CCcCCcChhhCCcccccCeecC-CC-CEech---hcCCCcc
Confidence 3456789999998543458999 99 88975 7889875
No 100
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=77.98 E-value=1.9 Score=38.93 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=35.8
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc--ccceecccccCccchHHHHHHHHHhhcCCc
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK--SCTKVAVDFVSPENVDECLRLTKEFRLLPK 894 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLk--SCIKVAlDFVSPEnV~eC~rLteEfR~Lp~ 894 (933)
+-|..=++.=..||+|+||+|.+|+++|.. .+.-+++ +++|+-+. .+..+...-|.
T Consensus 67 ~~i~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i-~f~~~~~~---~~~~~~~~~~~ 124 (128)
T 4i4a_A 67 IRINDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTI-WWDKESTL---NFLTRLEQDHH 124 (128)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEE-EECHHHHH---HHHHHHHHC--
T ss_pred EEECCEEEEECCCcEEEECCCCcEEeEeCCCCCEEEEEE-EECHHHHH---HHHHhcccccc
Confidence 345555777799999999999999999973 3333343 44555444 35555544443
No 101
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=77.93 E-value=2.3 Score=37.63 Aligned_cols=36 Identities=22% Similarity=0.597 Sum_probs=28.5
Q ss_pred ccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCC
Q 002348 196 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKM 236 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~ 236 (933)
+.....|+.|+++.--....| .|+ ..||. .-||++.
T Consensus 22 k~~~~RC~~C~kkvgL~~f~C-rCg-~~FCs---~HRy~e~ 57 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVTGFKC-RCG-STFCG---THRYPES 57 (74)
T ss_dssp TCCCCBCSSSCCBCTTTCEEC-TTS-CEECT---TTCSTTT
T ss_pred cccCccchhhcCcccccceEe-ccC-CEecc---ccCCCcC
Confidence 556689999998875456899 699 88975 6788875
No 102
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.86 E-value=0.96 Score=38.71 Aligned_cols=52 Identities=25% Similarity=0.533 Sum_probs=34.0
Q ss_pred cCCCCccccccCCCC--ceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCcc
Q 002348 197 LERIKCHQCMKSERK--YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 252 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~--~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 252 (933)
.....|--|...-.. ....-..|+ ..||..||.+|.... .....||.||..-
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-H~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCG-HTICRQCLEKLLASS---INGVRCPFCSKIT 66 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSS-CEEEHHHHHHHHHHC---SSCBCCTTTCCCB
T ss_pred cCCCCCccCCccccccCCCeEECCCC-ChhhHHHHHHHHHcC---CCCcCCCCCCCcc
Confidence 344568888765432 112223698 899999999997421 1246899999753
No 103
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=77.71 E-value=0.83 Score=43.02 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=25.3
Q ss_pred EEeecCceeEecCCCccccccccccceecc
Q 002348 842 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 871 (933)
Q Consensus 842 f~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 871 (933)
+.=..||+|+||+|.||..+|....-|+-+
T Consensus 89 ~~l~~GD~~~ip~g~~h~~~~~~~~rK~yv 118 (123)
T 3bcw_A 89 HAVKAGDAFIMPEGYTGRWEVDRHVKKIYF 118 (123)
T ss_dssp EEEETTCEEEECTTCCCEEEEEEEEEEEEE
T ss_pred EEECCCCEEEECCCCeEEEEECCceeEEEE
Confidence 445789999999999999999988777643
No 104
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=77.67 E-value=1.3 Score=36.19 Aligned_cols=46 Identities=20% Similarity=0.552 Sum_probs=30.4
Q ss_pred CCccccccC---CCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 200 IKCHQCMKS---ERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 200 ~~CHQCrqk---t~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.+|--|... +....+.=..|+ ..||..||.+|+.. ....||.||..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~~ 52 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCG-HTLCESCVDLLFVR-----GAGNCPECGTP 52 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTC-CCEEHHHHHHHHHT-----TSSSCTTTCCC
T ss_pred CcCCcCCCCccCCCccCeecCCCC-CHhHHHHHHHHHHc-----CCCcCCCCCCc
Confidence 467777761 222111224699 89999999999743 13579999874
No 105
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=77.33 E-value=0.99 Score=44.13 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=32.1
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccc----eEEEeecCceeEecCCCccccccc
Q 002348 813 IHPIHDQCFYLSSEHKKKLKEEFGVEP----WTFEQKLGEAVFIPAGCPHQVRNL 863 (933)
Q Consensus 813 ~dPIHDQ~fYLt~ehk~rLkEEyGVep----Wtf~Q~lGEAVFIPAGCPHQVRNL 863 (933)
.||- ++-+|+-.-.- ++.|.. =++.=..||+|+||+|.||+++|.
T Consensus 137 ~h~~-~E~~~Vl~G~~-----~~~~~~~~~~~~~~l~~GD~~~~~~~~~H~~~n~ 185 (198)
T 2bnm_A 137 GHAG-NEFLFVLEGEI-----HMKWGDKENPKEALLPTGASMFVEEHVPHAFTAA 185 (198)
T ss_dssp CCSS-CEEEEEEESCE-----EEEESCTTSCEEEEECTTCEEEECTTCCEEEEES
T ss_pred cCCC-eEEEEEEeeeE-----EEEECCcCCcccEEECCCCEEEeCCCCceEEEec
Confidence 4443 56666643321 244555 677888999999999999999998
No 106
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=77.21 E-value=1.3 Score=43.47 Aligned_cols=52 Identities=17% Similarity=0.483 Sum_probs=40.7
Q ss_pred cccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCch-----hhhhccCCCCC
Q 002348 195 KELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSE-----LDVAEICPFCR 249 (933)
Q Consensus 195 kk~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~-----edv~~~CP~CR 249 (933)
.++....|-.|... +.++-|..|. ..||..||..-.+.-.. .+-.|.||.|+
T Consensus 59 ~Dg~~d~C~vC~~G--G~LlcCD~Cp-r~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG--GNLICCDFCH-NAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TTSCBCSCSSSCCC--SSEEECSSSC-CEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCCeecccCCC--CcEEeCCCCC-CeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 35777899999976 4599999999 99999999977653222 23469999995
No 107
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=77.16 E-value=0.89 Score=46.29 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=34.0
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCcccccc-cccc
Q 002348 813 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRN-LKSC 866 (933)
Q Consensus 813 ~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRN-LkSC 866 (933)
.|| ++|-+|+-.-.- ++.|..=++.=..||+|+||||+||.++| ...|
T Consensus 170 ~H~-~~e~~~Vl~G~~-----~~~i~g~~~~l~~Gd~i~ip~~~~H~~~~~~~~~ 218 (227)
T 3rns_A 170 KAP-GDALVTVLDGEG-----KYYVDGKPFIVKKGESAVLPANIPHAVEAETENF 218 (227)
T ss_dssp CCS-SEEEEEEEEEEE-----EEEETTEEEEEETTEEEEECTTSCEEEECCSSCE
T ss_pred ECC-CcEEEEEEeEEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCCCCE
Confidence 466 566666544322 24444556777899999999999999999 7654
No 108
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=76.38 E-value=1.1 Score=47.17 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=38.8
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHH
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRL 885 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rL 885 (933)
+-|..-++.=..||.++||+|+||+.+|... --..+-+++|....+-++-
T Consensus 252 ~~i~~~~~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~~~~~~~~~~ 301 (337)
T 1y3t_A 252 MWTDGQEIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVPGLFEPFFRT 301 (337)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECSS-SEEEEEEEESSTTTHHHHH
T ss_pred EEECCEEEEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcCccHHHHHHH
Confidence 3455567888999999999999999999976 4445566788888765543
No 109
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3
Probab=76.13 E-value=0.9 Score=49.31 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=14.9
Q ss_pred eecCceeEecCCCcccc
Q 002348 844 QKLGEAVFIPAGCPHQV 860 (933)
Q Consensus 844 Q~lGEAVFIPAGCPHQV 860 (933)
=++|||+|||||.||=.
T Consensus 162 l~pGd~~~ipaGt~HA~ 178 (319)
T 1qwr_A 162 IKPGDFYYVPSGTLHAL 178 (319)
T ss_dssp CCTTCEEEECTTCCEEE
T ss_pred cCCCCEEEcCCCCceEe
Confidence 35899999999999974
No 110
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=75.99 E-value=2 Score=42.89 Aligned_cols=52 Identities=19% Similarity=0.559 Sum_probs=42.9
Q ss_pred ccCCCCccccccCCCCceEecC--cCCCCcccHhHHhhhCCCCchhhh----hccCCCCCC
Q 002348 196 ELERIKCHQCMKSERKYVVPCG--KCRTKVYCIQCIKQWYPKMSELDV----AEICPFCRR 250 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~--~C~r~~FC~~CL~~rY~e~~~edv----~~~CP~CRg 250 (933)
++....|.+|-.. +.++.|. +|. ..||..||....+.-+.+++ .|.|=.|.-
T Consensus 76 DG~~~yC~wC~~G--g~l~~Cdn~~C~-r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 76 DGYQSYCTICCGG--REVLMCGNNNCC-RCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TSSBSSCTTTSCC--SEEEECSSTTTC-CEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCcceeeEecCC--CeEEeeCCCCCC-CchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 5677899999976 5699999 699 89999999999998666554 499888764
No 111
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=75.75 E-value=1.7 Score=43.39 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=29.5
Q ss_pred eEEEeecCceeEecCCCccccccccccceecccccCccc
Q 002348 840 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 878 (933)
Q Consensus 840 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 878 (933)
.++.=..||+++||+|.+|.++|.-.---+.+-+.++.+
T Consensus 119 ~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~~ 157 (201)
T 1fi2_A 119 YSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQN 157 (201)
T ss_dssp EEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESSSC
T ss_pred EEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCC
Confidence 466778899999999999999998654444555556554
No 112
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=75.70 E-value=1.6 Score=42.37 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=31.0
Q ss_pred CccceEEEeecCceeEecCC--CccccccccccceecccccCcc
Q 002348 836 GVEPWTFEQKLGEAVFIPAG--CPHQVRNLKSCTKVAVDFVSPE 877 (933)
Q Consensus 836 GVepWtf~Q~lGEAVFIPAG--CPHQVRNLkSCIKVAlDFVSPE 877 (933)
-|..=++.=..||+|+||+| .+|+++|.-+---+.+-+.+|-
T Consensus 79 ~~~~~~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v~~p~ 122 (163)
T 3i7d_A 79 VDDQGEHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVGTRT 122 (163)
T ss_dssp EETTEEEEECTTCEEEECTTCCCCBEEECCSSSCEEEEEEEECC
T ss_pred EECCEEEEeCCCCEEEECCCCCcceEEEECCCCCEEEEEEECCC
Confidence 34445677789999999999 9999999866544455555553
No 113
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=75.34 E-value=0.45 Score=47.31 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=35.3
Q ss_pred ccCCcccCccccCH--HHHHHHHHHhCccceEEEeecCceeEecCCCcccccc
Q 002348 812 VIHPIHDQCFYLSS--EHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRN 862 (933)
Q Consensus 812 v~dPIHDQ~fYLt~--ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRN 862 (933)
..|+-+++.||+-. ..- ++-|..=++.=+.||+|+||+|.+|++.+
T Consensus 61 H~H~~~~E~~yVLe~~G~g-----~v~idge~~~l~~GD~v~IPpg~~H~i~g 108 (157)
T 4h7l_A 61 HYHREHQEIYVVLDHAAHA-----TIELNGQSYPLTKLLAISIPPLVRHRIVG 108 (157)
T ss_dssp BBCSSCEEEEEEEEECTTC-----EEEETTEEEECCTTEEEEECTTCCEEEES
T ss_pred eECCCCcEEEEEEecCcEE-----EEEECCEEEEeCCCCEEEECCCCeEeeEC
Confidence 46777888888754 322 24555667888999999999999999985
No 114
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3
Probab=75.33 E-value=0.97 Score=48.72 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.3
Q ss_pred EeecCceeEecCCCcccc
Q 002348 843 EQKLGEAVFIPAGCPHQV 860 (933)
Q Consensus 843 ~Q~lGEAVFIPAGCPHQV 860 (933)
.=++|||+|||||.||=.
T Consensus 161 ~l~pGd~~~ipaGt~HA~ 178 (300)
T 1zx5_A 161 ETTPYDTFVIRPGIPHAG 178 (300)
T ss_dssp ECCTTCEEEECTTCCEEE
T ss_pred ECCCCCEEEcCCCCceEc
Confidence 336899999999999964
No 115
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=74.89 E-value=2.4 Score=38.53 Aligned_cols=54 Identities=19% Similarity=0.532 Sum_probs=43.0
Q ss_pred ccCCCCccccccCCCCceEecCcCCCCcccHhHHhh-hCCCCc---------hhhhhccCCCCCC
Q 002348 196 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQ-WYPKMS---------ELDVAEICPFCRR 250 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~-rY~e~~---------~edv~~~CP~CRg 250 (933)
-..-.+|--|.+-+...+.+|+-|+ ..|=..||++ .|..-. .-++-|.||.|-.
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~-RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCT-RVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSS-SCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCCcccCccccccccceecccccc-ccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 3566789999999999999999999 8899999999 576331 1245699999954
No 116
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=74.47 E-value=1.7 Score=41.27 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=25.7
Q ss_pred EEeecCceeEecCCCccccccccccceecccccCc
Q 002348 842 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 876 (933)
Q Consensus 842 f~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 876 (933)
+.=..||+|+||+|.||+.+|....--+.+-++.|
T Consensus 89 ~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~~ 123 (147)
T 2f4p_A 89 RILKKGDVVEIPPNVVHWHGAAPDEELVHIGISTQ 123 (147)
T ss_dssp EEEETTCEEEECTTCCEEEEEBTTBCEEEEEEECC
T ss_pred EEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcc
Confidence 55679999999999999999986543333444443
No 117
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=74.42 E-value=4.6 Score=40.09 Aligned_cols=49 Identities=27% Similarity=0.577 Sum_probs=36.4
Q ss_pred CCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 198 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 198 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
+...|..|++. +.++.|-.|. ..|-..|+..-..... +-.|.||.|+..
T Consensus 3 ~~~~C~~C~~~--g~ll~Cd~C~-~~~H~~C~~p~l~~~p--~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG--GELLCCEKCP-KVFHLSCHVPTLTNFP--SGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC--SSCEECSSSS-CEECTTTSSSCCSSCC--SSCCCCTTTSCS
T ss_pred CCCccccCCCC--CeeeecCCCC-cccCccccCCCCCCCC--CCCEECccccCc
Confidence 44679999866 5599999999 8888899865443332 235999999863
No 118
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=73.03 E-value=1.5 Score=38.16 Aligned_cols=49 Identities=27% Similarity=0.587 Sum_probs=34.7
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.....|.-|...-...++ -..|+ ..||..||..|+... -...||.||..
T Consensus 11 ~~~~~C~IC~~~~~~p~~-~~~Cg-H~fC~~Ci~~~~~~~----~~~~CP~Cr~~ 59 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVV-IPCCG-NSYCDECIRTALLES----DEHTCPTCHQN 59 (92)
T ss_dssp CTTTEETTTTEECSSCEE-CTTTC-CEECHHHHHHHHHHC----TTCCCTTTCCS
T ss_pred CcCCCCCCCChhhcCceE-CCCCC-CHHHHHHHHHHHHhc----CCCcCcCCCCc
Confidence 456789999875554443 33499 999999999997421 13589999874
No 119
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=71.80 E-value=1.4 Score=41.00 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=25.3
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
+-|..-++.=..||+++||+|.||+.+|.-.
T Consensus 91 ~~i~~~~~~l~~Gd~i~i~~~~~H~~~n~~~ 121 (133)
T 1o4t_A 91 FHDNGKDVPIKAGDVCFTDSGESHSIENTGN 121 (133)
T ss_dssp EEETTEEEEEETTEEEEECTTCEEEEECCSS
T ss_pred EEECCEEEEeCCCcEEEECCCCcEEeEECCC
Confidence 3345556777899999999999999999754
No 120
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=71.58 E-value=1.4 Score=39.86 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=26.3
Q ss_pred eEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCcc
Q 002348 213 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 252 (933)
Q Consensus 213 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 252 (933)
++.-..|+ ..||..||..|...- .......||.||..-
T Consensus 55 ~~~~~~C~-H~Fh~~Ci~~wl~~~-~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 55 VGRLTKCS-HAFHLLCLLAMYCNG-NKDGSLQCPSCKTIY 92 (114)
T ss_dssp CEEESSSC-CEECHHHHHHHHHHT-CCSSCCBCTTTCCBS
T ss_pred ceecCCCC-CcccHHHHHHHHHcc-cCCCCCcCCCCCCcc
Confidence 44456798 899999999998210 002346899999753
No 121
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=71.49 E-value=1.6 Score=39.75 Aligned_cols=46 Identities=26% Similarity=0.657 Sum_probs=33.9
Q ss_pred CCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 198 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 198 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
....|--|...-...++ ..|+ ..||..||..|... ....||.||..
T Consensus 22 ~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~~ 67 (116)
T 1rmd_A 22 KSISCQICEHILADPVE--TSCK-HLFCRICILRCLKV-----MGSYCPSCRYP 67 (116)
T ss_dssp HHTBCTTTCSBCSSEEE--CTTS-CEEEHHHHHHHHHH-----TCSBCTTTCCB
T ss_pred CCCCCCCCCcHhcCcEE--cCCC-CcccHHHHHHHHhH-----CcCcCCCCCCC
Confidence 34678888766554444 5799 99999999999743 13479999873
No 122
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=71.07 E-value=3.4 Score=46.37 Aligned_cols=52 Identities=21% Similarity=0.609 Sum_probs=42.2
Q ss_pred ccCCCCccccccCCCCceEecC--cCCCCcccHhHHhhhCCCCchhhh----hccCCCCCC
Q 002348 196 ELERIKCHQCMKSERKYVVPCG--KCRTKVYCIQCIKQWYPKMSELDV----AEICPFCRR 250 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~--~C~r~~FC~~CL~~rY~e~~~edv----~~~CP~CRg 250 (933)
++....|.+|-.. +.++.|. +|. ..||..||.+..+.-..+++ .|.|=.|.-
T Consensus 90 DG~~~yCr~C~~G--g~l~~Cdn~~C~-r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 90 DGYQSYCSICCSG--ETLLICGNPDCT-RCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSBCSCTTTCCC--SSCEECCSTTCC-CEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcccceEcCCC--CeEEEeCCCCCC-cchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 5677789999976 4599999 799 89999999999987665554 499988764
No 123
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=70.78 E-value=2.7 Score=38.20 Aligned_cols=49 Identities=27% Similarity=0.715 Sum_probs=33.2
Q ss_pred ccCCCCccccccCCC-----CceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 196 ELERIKCHQCMKSER-----KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 196 k~~~~~CHQCrqkt~-----~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
......|--|...-. +.......|+ ..||..||.+|.. ....||.||..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~------~~~~CP~Cr~~ 122 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLK------NANTCPTCRKK 122 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTS-BEEEHHHHHHHHH------HCSBCTTTCCB
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCC-ChhhHHHHHHHHH------cCCCCCCCCCc
Confidence 345566777765321 1223455788 8999999999963 24699999963
No 124
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=70.43 E-value=1.4 Score=47.22 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=35.7
Q ss_pred EEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHHHHhhcCCccc
Q 002348 841 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNH 896 (933)
Q Consensus 841 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H 896 (933)
++.=..||+++||+|+||+++|.-+--=+.+-|++|.+... +.|+.=++.+|.+-
T Consensus 279 ~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~v 333 (361)
T 2vqa_A 279 VSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQS-IDLSTWLASNPSSV 333 (361)
T ss_dssp EEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESSSSCCC-EEHHHHHHTSCHHH
T ss_pred EEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECCCCcce-eeHHHHhhhCCHHH
Confidence 56667899999999999999998653334455555554222 12344566666543
No 125
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=70.29 E-value=1.5 Score=44.61 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=39.6
Q ss_pred cccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceecc
Q 002348 811 QVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 871 (933)
Q Consensus 811 ~v~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 871 (933)
...|| +++.+|+-.--- ++.|..=++.=..||.++||||.||-++|+..|+=+..
T Consensus 52 ~h~h~-~~~~~~Vl~G~~-----~~~i~~~~~~l~~Gd~~~~p~~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 52 AEAML-GNRYYYCFNGNG-----EIFIENNKKTISNGDFLEITANHNYSIEARDNLKLIEI 106 (227)
T ss_dssp ECSCS-SCEEEEEEESEE-----EEEESSCEEEEETTEEEEECSSCCEEEEESSSEEEEEE
T ss_pred ccccC-CCEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCCcEEEEE
Confidence 44677 778777643321 23445556667789999999999999999998766544
No 126
>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*
Probab=69.99 E-value=1.5 Score=49.01 Aligned_cols=15 Identities=47% Similarity=0.738 Sum_probs=14.3
Q ss_pred ecCceeEecCCCccc
Q 002348 845 KLGEAVFIPAGCPHQ 859 (933)
Q Consensus 845 ~lGEAVFIPAGCPHQ 859 (933)
++|||+|||||.||=
T Consensus 245 ~pGd~~fipAG~~HA 259 (394)
T 2wfp_A 245 NPGEAMFLFAETPHA 259 (394)
T ss_dssp CTTCEEEECTTCCEE
T ss_pred CCCCEEEcCCCCceE
Confidence 789999999999996
No 127
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=69.97 E-value=2.4 Score=36.95 Aligned_cols=50 Identities=24% Similarity=0.652 Sum_probs=32.9
Q ss_pred cCCCCccccccCCC---CceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCccc
Q 002348 197 LERIKCHQCMKSER---KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 253 (933)
Q Consensus 197 ~~~~~CHQCrqkt~---~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~CN 253 (933)
.....|--|...-. -....| .|+ ..||..||.+...+ ....||.||..-.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~-~CG-H~fC~~Cl~~~~~~-----~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPC-TCG-YQICRFCWHRIRTD-----ENGLCPACRKPYP 61 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSS-TTS-CCCCHHHHHHHTTS-----SCSBCTTTCCBCS
T ss_pred ccCCcCCccCccCcccccccccc-CCC-CCcCHHHHHHHHhc-----CCCCCCCCCCccC
Confidence 34456777776321 112334 588 89999999988642 3468999998543
No 128
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=69.86 E-value=1.4 Score=45.68 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=31.7
Q ss_pred CCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccc
Q 002348 814 HPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 814 dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
|+-.++-+|+-.-.- ++.|..=++.=..||+||||+|+||+.+|.-.
T Consensus 197 H~~~~E~~~Vl~G~~-----~~~i~~~~~~l~~GD~i~~~~~~~H~~~n~g~ 243 (261)
T 1rc6_A 197 THVQEHGAYILSGQG-----VYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGR 243 (261)
T ss_dssp EESSCEEEEEEESEE-----EEESSSCEEEEETTCEEEECSSEEEEEEEC--
T ss_pred CCCceEEEEEEEeEE-----EEEECCEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 444445556533221 24555667788899999999999999999854
No 129
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=69.81 E-value=2.9 Score=34.93 Aligned_cols=50 Identities=20% Similarity=0.571 Sum_probs=38.2
Q ss_pred ccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 196 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
......|..|++. +.++.|-.|. ..|=..||..-...+. +-.|.||.|..
T Consensus 8 ~~~~~~C~vC~~~--g~ll~CD~C~-~~fH~~Cl~p~l~~~p--~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG--GEIILCDTCP-RAYHMVCLDPDMEKAP--EGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC--SSEEECSSSS-CEEEHHHHCTTCCSCC--CSSCCCTTGGG
T ss_pred CCCCCCCccCCCC--CcEEECCCCC-hhhhhhccCCCCCCCC--CCceECccccc
Confidence 4566789999875 5699999999 6899999986443332 34799999964
No 130
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=69.77 E-value=4.2 Score=41.20 Aligned_cols=51 Identities=25% Similarity=0.534 Sum_probs=38.0
Q ss_pred ccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 196 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
..+...|..|++. +.++.|-.|. ..|-..|+..-....+ +-.|.||.|+..
T Consensus 4 d~~~~~C~~C~~~--g~ll~Cd~C~-~~~H~~Cl~p~l~~~p--~~~W~C~~C~~~ 54 (207)
T 3u5n_A 4 DPNEDWCAVCQNG--GDLLCCEKCP-KVFHLTCHVPTLLSFP--SGDWICTFCRDI 54 (207)
T ss_dssp CSSCSSBTTTCCC--EEEEECSSSS-CEECTTTSSSCCSSCC--SSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCC--CceEEcCCCC-CccCCccCCCCCCCCC--CCCEEeCceeCc
Confidence 3566789999866 4699999999 8898999865443332 235999999863
No 131
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=68.93 E-value=2.3 Score=40.32 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=28.1
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecc
Q 002348 837 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 871 (933)
Q Consensus 837 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 871 (933)
+..=++.=+.||+++||+|.||..+|...+.++.+
T Consensus 90 ~~g~~~~l~~GD~i~~p~g~~h~~~~~~~~~~l~v 124 (133)
T 2pyt_A 90 HEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFLYV 124 (133)
T ss_dssp ETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEE
T ss_pred ECCEEEEECCCcEEEECCCCEEEEEeCCCEEEEEE
Confidence 33455677899999999999999999877766654
No 132
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=68.83 E-value=1.6 Score=40.19 Aligned_cols=45 Identities=22% Similarity=0.567 Sum_probs=32.4
Q ss_pred CCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 198 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 198 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
....|--|...-...++ ..|+ ..||..||..|... -...||.||.
T Consensus 17 ~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~ 61 (118)
T 3hct_A 17 SKYECPICLMALREAVQ--TPCG-HRFCKACIIKSIRD-----AGHKCPVDNE 61 (118)
T ss_dssp GGGBCTTTCSBCSSEEE--CTTS-CEEEHHHHHHHHHH-----HCSBCTTTCC
T ss_pred CCCCCCcCChhhcCeEE--CCcC-ChhhHHHHHHHHhh-----CCCCCCCCCC
Confidence 34678888866554433 3699 89999999999742 1238999985
No 133
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=68.81 E-value=2 Score=45.15 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=34.8
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceecccccCccchHHHH
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECL 883 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~ 883 (933)
+.|..-++.=..||.|+||+|.||..+|...- -..+.+++|....+-+
T Consensus 80 ~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~-~~~~~~~~p~~~~~~~ 127 (337)
T 1y3t_A 80 LTLDGERYLLISGDYANIPAGTPHSYRMQSHR-TRLVSYTMKGNVAHLY 127 (337)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECSTT-EEEEEEEETTSSTHHH
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEECCCC-eEEEEEECCCCHHHHH
Confidence 33455667778999999999999999998762 2344556666666544
No 134
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.61 E-value=1 Score=36.91 Aligned_cols=50 Identities=26% Similarity=0.594 Sum_probs=37.0
Q ss_pred ccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 196 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
.++...|..|++. +.++.|-.|. ..|=..||..-...+. .-.|.||.|..
T Consensus 6 ~~~~~~C~vC~~~--g~ll~Cd~C~-~~~H~~Cl~ppl~~~p--~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS--GQLLMCDTCS-RVYHLDCLDPPLKTIP--KGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS--SCCEECSSSS-CEECSSSSSSCCCSCC--CSSCCCHHHHC
T ss_pred CCCCCCCccCCCC--CeEEEcCCCC-cceECccCCCCcCCCC--CCceEChhhhC
Confidence 4667789999986 4699999999 7788888874333332 23799999864
No 135
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=67.86 E-value=2.1 Score=43.92 Aligned_cols=47 Identities=23% Similarity=0.164 Sum_probs=33.5
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeE-ecCCCccccccccc
Q 002348 813 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVF-IPAGCPHQVRNLKS 865 (933)
Q Consensus 813 ~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVF-IPAGCPHQVRNLkS 865 (933)
.|| +.|-+|+-.--- ++-|..=++.=..||+|| ||+|.||+++|..+
T Consensus 51 ~H~-~~e~~~Vl~G~~-----~~~~~~~~~~l~~Gd~i~~ip~~~~H~~~n~~~ 98 (243)
T 3h7j_A 51 QHK-EVQIGMVVSGEL-----MMTVGDVTRKMTALESAYIAPPHVPHGARNDTD 98 (243)
T ss_dssp CCS-SEEEEEEEESEE-----EEEETTEEEEEETTTCEEEECTTCCEEEEECSS
T ss_pred ECC-CcEEEEEEEeEE-----EEEECCEEEEECCCCEEEEcCCCCcEeeEeCCC
Confidence 566 667666643322 233444466678999997 99999999999877
No 136
>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3
Probab=67.66 E-value=1.8 Score=49.16 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=14.6
Q ss_pred eecCceeEecCCCccc
Q 002348 844 QKLGEAVFIPAGCPHQ 859 (933)
Q Consensus 844 Q~lGEAVFIPAGCPHQ 859 (933)
=++|||+|||||.||=
T Consensus 270 L~pGea~flpAg~~HA 285 (440)
T 1pmi_A 270 LNKGEAMFLQAKDPHA 285 (440)
T ss_dssp ECTTCEEEECTTCCEE
T ss_pred cCCCCEEecCCCCccc
Confidence 4689999999999996
No 137
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=67.31 E-value=2.3 Score=38.23 Aligned_cols=36 Identities=19% Similarity=0.421 Sum_probs=30.1
Q ss_pred cCCCCccccccCC--CCceEecCcCCCCcccHhHHhhhC
Q 002348 197 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWY 233 (933)
Q Consensus 197 ~~~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY 233 (933)
.....|..|.++- ..+.-.|+.|+ ..||..|...+.
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG-~vfC~~Cs~~~~ 44 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCG-RAFCNGCLSFSA 44 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSC-CEEETTTSCEEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCC-CEEChhHcCCce
Confidence 5667899999875 46678999999 999999998764
No 138
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.26 E-value=4 Score=34.59 Aligned_cols=42 Identities=29% Similarity=0.653 Sum_probs=29.6
Q ss_pred cCCCCccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.....|--|...-...++ ..|+ .. ||..|+.+. ..||.||..
T Consensus 23 ~~~~~C~IC~~~~~~~~~--~pCg-H~~~C~~C~~~~----------~~CP~Cr~~ 65 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVF--VPCG-HLVTCKQCAEAV----------DKCPMCYTV 65 (75)
T ss_dssp HHHHSCSSSCSSCCCBCC--SSSC-CCCBCHHHHHHC----------SBCTTTCCB
T ss_pred CCCCCCCcCCCCCCCEEE--ecCC-CHHHHHHHhhCC----------CCCccCCce
Confidence 345579899876554332 4688 66 999999642 589999973
No 139
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=66.66 E-value=1.9 Score=46.90 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=49.8
Q ss_pred ccCCcccCccccCHHHHHHHHHHhCccc-----eEEEeecCceeEecCCCccccccccccceecccccCccchHHHHHHH
Q 002348 812 VIHPIHDQCFYLSSEHKKKLKEEFGVEP-----WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLT 886 (933)
Q Consensus 812 v~dPIHDQ~fYLt~ehk~rLkEEyGVep-----Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLt 886 (933)
..|+-.++.||+-.-.- ++-|.. -++.=..||.|+||+|.||..+|.-.-. ..+-.++|....+-++-.
T Consensus 66 H~H~~~~E~~~Vl~G~~-----~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~~l~v~~p~~~~~~f~~l 139 (350)
T 1juh_A 66 HIHQKHYENFYCNKGSF-----QLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDT-EMTGVIVPGGFEDLFYYL 139 (350)
T ss_dssp EECSSCEEEEEEEESEE-----EEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTE-EEEEEEESSCTTHHHHHH
T ss_pred ccCCCceEEEEEEEEEE-----EEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCCCC-EEEEEEcCccHHHHHHHh
Confidence 35666667777643322 244555 6788899999999999999999986654 667788888876665443
Q ss_pred H
Q 002348 887 K 887 (933)
Q Consensus 887 e 887 (933)
.
T Consensus 140 ~ 140 (350)
T 1juh_A 140 G 140 (350)
T ss_dssp S
T ss_pred c
Confidence 3
No 140
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=66.65 E-value=2 Score=44.90 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=26.1
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
+-|..-++.=..||+|+||||+||+.+|.-.
T Consensus 216 ~~i~~~~~~l~~GD~i~i~~~~~H~~~n~~~ 246 (274)
T 1sef_A 216 YNLDNEWYPVEKGDYIFMSAYVPQAAYAVGR 246 (274)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEEECS
T ss_pred EEECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 4555567788999999999999999999755
No 141
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=66.46 E-value=2.5 Score=33.97 Aligned_cols=43 Identities=21% Similarity=0.613 Sum_probs=30.0
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
....+|--|...-...+ -..|+ ..||..||..| ...||.||..
T Consensus 4 ~~~~~C~IC~~~~~~p~--~l~Cg-H~fC~~Ci~~~---------~~~CP~Cr~~ 46 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPK--LLPCL-HTLCSGCLEAS---------GMQCPICQAP 46 (56)
T ss_dssp CCCSSCSSSCSSCBCCS--CSTTS-CCSBTTTCSSS---------SSSCSSCCSS
T ss_pred ccCCCceEeCCccCCeE--EcCCC-CcccHHHHccC---------CCCCCcCCcE
Confidence 45567888876544322 23588 88999999872 4579999874
No 142
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.15 E-value=6.7 Score=33.07 Aligned_cols=43 Identities=28% Similarity=0.677 Sum_probs=30.3
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.....|--|.......+ -.-|+-..||..|+.+ .+.||.||..
T Consensus 13 ~~~~~C~IC~~~~~~~v--~~pCgH~~~C~~C~~~----------~~~CP~CR~~ 55 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWV--LLPCRHTCLCDGCVKY----------FQQCPMCRQF 55 (68)
T ss_dssp CCSSCCSSSSSSCCCCE--ETTTTBCCSCTTHHHH----------CSSCTTTCCC
T ss_pred CCCCCCCCcCcCCCCEE--EECCCChhhhHHHHhc----------CCCCCCCCcc
Confidence 45678999988766433 2357723399999983 2689999973
No 143
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=65.45 E-value=2.1 Score=45.73 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=22.5
Q ss_pred hCccceEEEeecCceeEecCCCccccccc
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNL 863 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNL 863 (933)
|-+..=.+.=+.||++|||+||||+..|.
T Consensus 220 y~l~~~~~~V~~GD~i~~~~~~~h~~~n~ 248 (266)
T 4e2q_A 220 YRLGDNWYPVQAGDVIWMAPFVPQWYAAL 248 (266)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred EEECCEEEEecCCCEEEECCCCcEEEEeC
Confidence 33444445567899999999999999886
No 144
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=65.28 E-value=4.7 Score=34.93 Aligned_cols=41 Identities=29% Similarity=0.724 Sum_probs=29.6
Q ss_pred CCCCccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 198 ERIKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 198 ~~~~CHQCrqkt~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
....|--|.......+. ..|+ .. ||..|+.++ +.||.||..
T Consensus 17 ~~~~C~IC~~~~~~~v~--~pCg-H~~~C~~C~~~~----------~~CP~Cr~~ 58 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTF--CPCG-HTVCCESCAAQL----------QSCPVCRSR 58 (79)
T ss_dssp HHTBCTTTSSSBCCEEE--ETTC-BCCBCHHHHTTC----------SBCTTTCCB
T ss_pred CCCEeEEeCcccCcEEE--ECCC-CHHHHHHHHHhc----------CcCCCCCch
Confidence 34578888876654333 3588 55 999999865 399999984
No 145
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=65.02 E-value=2.2 Score=46.39 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=22.9
Q ss_pred ceEEEeecCceeEecCCCccccccccc
Q 002348 839 PWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 839 pWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
.-++.=..||+++||+|+||+++|.-+
T Consensus 300 ~~~~~l~~GD~~~ip~~~~H~~~n~~~ 326 (385)
T 1j58_A 300 ARTFNYQAGDVGYVPFAMGHYVENIGD 326 (385)
T ss_dssp EEEEEEESSCEEEECTTCBEEEEECSS
T ss_pred EEEEEEcCCCEEEECCCCeEEEEECCC
Confidence 345666799999999999999999854
No 146
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=65.02 E-value=3 Score=41.62 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=24.6
Q ss_pred ccceEEEeecCceeEecCCCccccccccc
Q 002348 837 VEPWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 837 VepWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
|..=+|.=..||.++||||.||..+|.-+
T Consensus 125 l~g~~~~L~~Gds~~iP~g~~H~~~N~~d 153 (166)
T 2vpv_A 125 VCKNKFLSVKGSTFQIPAFNEYAIANRGN 153 (166)
T ss_dssp ETTEEEEEETTCEEEECTTCEEEEEECSS
T ss_pred ECCEEEEEcCCCEEEECCCCCEEEEECCC
Confidence 44457777899999999999999999765
No 147
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Probab=64.57 E-value=3.8 Score=47.29 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=34.5
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc--cceecccccCc
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS--CTKVAVDFVSP 876 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS--CIKVAlDFVSP 876 (933)
.+-..+.++-.+||..|||.|.+|||+++-. ++.+++-+-.|
T Consensus 223 ~~~p~~e~~L~pGDvLYiP~g~~H~~~s~~~~~SlhlTi~~~~~ 266 (489)
T 4diq_A 223 LGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQR 266 (489)
T ss_dssp CCCCSEEEEECTTCEEEECTTCEEEEEBCSSCCEEEEEEEECTT
T ss_pred ccCcceEEEECCCCEEEECCCCceEEEecCCCceEEEeecccCc
Confidence 3567789999999999999999999999954 57777666544
No 148
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=64.28 E-value=3.3 Score=45.35 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=30.5
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceecccccCc
Q 002348 837 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 876 (933)
Q Consensus 837 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 876 (933)
|.+-++.=..||+|+||+|.+|+.+|.-+---+-++|..|
T Consensus 136 v~g~~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v~d~ 175 (354)
T 2d40_A 136 VDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDL 175 (354)
T ss_dssp ETTEEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEECH
T ss_pred ECCEEEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEEECc
Confidence 4555788889999999999999999985532344666655
No 149
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=64.15 E-value=3.3 Score=37.60 Aligned_cols=46 Identities=26% Similarity=0.787 Sum_probs=31.5
Q ss_pred CCCccccccCCC-----CceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 199 RIKCHQCMKSER-----KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 199 ~~~CHQCrqkt~-----~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
...|--|...-. +..+.-..|+ ..||..||.+|.... ..||.||..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~~------~~CP~Cr~~ 57 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKNA------NTCPTCRKK 57 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTC-CEEEHHHHHHHHTTC------SBCTTTCCB
T ss_pred CCCCcccChhhhCccccccCeEecCCC-ChhhHHHHHHHHHhC------CCCCCCCCc
Confidence 456777764422 1223445799 899999999998643 389998873
No 150
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=64.00 E-value=5.7 Score=31.62 Aligned_cols=47 Identities=23% Similarity=0.678 Sum_probs=35.0
Q ss_pred CccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 201 KCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 201 ~CHQCrqkt-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
.|..|++.. .+.++.|-.|. ..|=..||.--..++. +-.|.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~-~~~H~~Cl~p~l~~~P--~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECN-KAFHLFCLRPALYEVP--DGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTC-CEECHHHHCTTCCSCC--SSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCC-hhhCcccCCCCcCCCC--CCcEECcCccc
Confidence 588898875 56789999999 6788888864333332 23799999975
No 151
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=63.78 E-value=2.6 Score=47.40 Aligned_cols=46 Identities=26% Similarity=0.785 Sum_probs=33.9
Q ss_pred CCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCcc
Q 002348 199 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 252 (933)
Q Consensus 199 ~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 252 (933)
...|.-|...-.. .....|+ ..||..||..|... ....||.||...
T Consensus 332 ~~~C~ICle~~~~--pv~lpCG-H~FC~~Ci~~wl~~-----~~~~CP~CR~~i 377 (389)
T 2y1n_A 332 FQLCKICAENDKD--VKIEPCG-HLMCTSCLTSWQES-----EGQGCPFCRCEI 377 (389)
T ss_dssp SSBCTTTSSSBCC--EEEETTC-CEECHHHHHHHHHH-----TCSBCTTTCCBC
T ss_pred CCCCCccCcCCCC--eEEeCCC-ChhhHHHHHHHHhc-----CCCCCCCCCCcc
Confidence 3689999876543 3445799 88999999998641 235899999753
No 152
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}
Probab=63.44 E-value=4 Score=46.35 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=27.4
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 864 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 864 (933)
+|...+.++=.+||+.|||+|.+|+|+++-
T Consensus 194 ~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~ 223 (442)
T 2xdv_A 194 IGRPVHEFMLKPGDLLYFPRGTIHQADTPA 223 (442)
T ss_dssp SCSCSEEEEECTTCEEEECTTCEEEEECCS
T ss_pred cCCcceEEEECCCcEEEECCCceEEEEecC
Confidence 566778999999999999999999999986
No 153
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=62.76 E-value=3.3 Score=34.42 Aligned_cols=49 Identities=22% Similarity=0.472 Sum_probs=33.6
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.....|--|.......++.-..|+-..||..|+.++.. ..+.||.||..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~------~~~~CPiCR~~ 54 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK------RNKPCPVCRQP 54 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH------TTCCCTTTCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH------cCCcCCCcCcc
Confidence 34567889987776555432357723389999998763 24689999973
No 154
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=62.03 E-value=3.3 Score=34.58 Aligned_cols=50 Identities=22% Similarity=0.593 Sum_probs=36.7
Q ss_pred ccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 196 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
+.+...|..|++. +.++.|-.|. ..|=..||..-..++. +-.|.||.|+.
T Consensus 6 d~~~~~C~vC~~~--g~ll~Cd~C~-~~fH~~Cl~ppl~~~p--~g~W~C~~C~~ 55 (61)
T 1mm2_A 6 DHHMEFCRVCKDG--GELLCCDTCP-SSYHIHCLNPPLPEIP--NGEWLCPRCTC 55 (61)
T ss_dssp CSSCSSCTTTCCC--SSCBCCSSSC-CCBCSSSSSSCCSSCC--SSCCCCTTTTT
T ss_pred cCCCCcCCCCCCC--CCEEEcCCCC-HHHcccccCCCcCcCC--CCccCChhhcC
Confidence 4567789999864 5689999999 6788888875433332 24799999964
No 155
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=61.58 E-value=8.5 Score=34.89 Aligned_cols=37 Identities=22% Similarity=0.494 Sum_probs=28.6
Q ss_pred cccCCCCccccccCCCC-ceEecCcCCCCcccHhHHhhhCCCC
Q 002348 195 KELERIKCHQCMKSERK-YVVPCGKCRTKVYCIQCIKQWYPKM 236 (933)
Q Consensus 195 kk~~~~~CHQCrqkt~~-~~v~C~~C~r~~FC~~CL~~rY~e~ 236 (933)
++.....|+.|+++..- .-..|+ |+ ..||. .-||++.
T Consensus 21 ~k~~~~rC~~C~kkvgl~~~f~Cr-Cg-~~FC~---~HRy~e~ 58 (85)
T 1wff_A 21 KKKIMKHCFLCGKKTGLATSFECR-CG-NNFCA---SHRYAEA 58 (85)
T ss_dssp CCCCCCBCSSSCCBCSSSSCEECT-TC-CEECT---TTCSTGG
T ss_pred CcccCccchhhCCeecccCCeEcC-CC-CEecc---cCCCccC
Confidence 45667899999998754 368996 99 88975 6788864
No 156
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=60.53 E-value=5.9 Score=34.19 Aligned_cols=36 Identities=25% Similarity=0.588 Sum_probs=27.7
Q ss_pred ccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCC
Q 002348 196 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKM 236 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~ 236 (933)
+.....|..|+++..-....| .|+ +.||. .-||++.
T Consensus 12 ~~~~~rC~~C~kkvgl~~f~C-rCg-~~FC~---~HR~~e~ 47 (64)
T 1wg2_A 12 VRPNNRCFSCNKKVGVMGFKC-KCG-STFCG---SHRYPEK 47 (64)
T ss_dssp SCCSCSCTTTCCCCTTSCEEC-TTS-CEECS---SSCSSTT
T ss_pred CCcCCcChhhCCcccccCeEe-ecC-CEecc---cCCCccc
Confidence 445678999999854446899 799 88975 6788875
No 157
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=60.37 E-value=2.9 Score=44.12 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=25.3
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
+.|..=++.=..||+++||||.||+++|.-+
T Consensus 103 v~v~g~~~~L~~GD~i~ip~~~~H~~~N~g~ 133 (278)
T 1sq4_A 103 LTLQGQVHAMQPGGYAFIPPGADYKVRNTTG 133 (278)
T ss_dssp EEESSCEEEECTTEEEEECTTCCEEEECCSS
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEECCC
Confidence 3444557778899999999999999999843
No 158
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=60.30 E-value=4.8 Score=36.53 Aligned_cols=51 Identities=18% Similarity=0.450 Sum_probs=38.6
Q ss_pred cccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 195 KELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 195 kk~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
...+...|..|++.. .++.|-.|. ..|=..||..-..+++ +-.|.||.|+.
T Consensus 21 ~d~n~~~C~vC~~~g--~LL~CD~C~-~~fH~~Cl~PpL~~~P--~g~W~C~~C~~ 71 (88)
T 1fp0_A 21 LDDSATICRVCQKPG--DLVMCNQCE-FCFHLDCHLPALQDVP--GEEWSCSLCHV 71 (88)
T ss_dssp SSSSSSCCSSSCSSS--CCEECTTSS-CEECTTSSSTTCCCCC--SSSCCCCSCCC
T ss_pred cCCCCCcCcCcCCCC--CEEECCCCC-CceecccCCCCCCCCc--CCCcCCccccC
Confidence 356777899999764 599999999 7788888865444433 24699999975
No 159
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=60.24 E-value=4.2 Score=37.64 Aligned_cols=49 Identities=20% Similarity=0.566 Sum_probs=36.5
Q ss_pred CCCccccccCC--CCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 199 RIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 199 ~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
-+.|+.|++.. .+.++.|..|. ..|=..||..-..+++. -.|.||.|+.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~-~~yH~~Cl~p~l~~~P~--~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCD-RGFHMECCDPPLTRMPK--GMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTC-CEECGGGCSSCCSSCCS--SCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCC-CeeecccCCCCCCCCCC--CCeECCCCCC
Confidence 34788888753 35789999999 77889998755554433 2799999974
No 160
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.47 E-value=14 Score=32.22 Aligned_cols=50 Identities=16% Similarity=0.429 Sum_probs=37.2
Q ss_pred ccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 196 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
......|.-|+.--. .-..|..|+ .+|=..||.+|+... -.-.||.||..
T Consensus 12 ~~~i~~C~IC~~~i~-~g~~C~~C~-h~fH~~Ci~kWl~~~----~~~~CP~Cr~~ 61 (74)
T 2ct0_A 12 PDAVKICNICHSLLI-QGQSCETCG-IRMHLPCVAKYFQSN----AEPRCPHCNDY 61 (74)
T ss_dssp SSSSCBCSSSCCBCS-SSEECSSSC-CEECHHHHHHHSTTC----SSCCCTTTCSC
T ss_pred cCCCCcCcchhhHcc-cCCccCCCC-chhhHHHHHHHHHhc----CCCCCCCCcCc
Confidence 355667888886654 346899999 889999999999532 12589999864
No 161
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=58.78 E-value=4.4 Score=45.14 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=25.1
Q ss_pred ccceEEEeecCceeEecCCCccccccccc
Q 002348 837 VEPWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 837 VepWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
|.+=++.=..||+|+||+|+.|++.|--+
T Consensus 139 vdG~~~~~~~GD~v~iP~g~~H~~~N~gd 167 (368)
T 3nw4_A 139 VNGDPVRMSRGDLLLTPGWCFHGHMNDTD 167 (368)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEECSS
T ss_pred ECCEEEEEeCCCEEEECCCCcEEeEeCCC
Confidence 56668888999999999999999999643
No 162
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=58.60 E-value=4.3 Score=45.54 Aligned_cols=29 Identities=21% Similarity=0.094 Sum_probs=25.8
Q ss_pred CccceEEEeecCceeEecCCCcccccccc
Q 002348 836 GVEPWTFEQKLGEAVFIPAGCPHQVRNLK 864 (933)
Q Consensus 836 GVepWtf~Q~lGEAVFIPAGCPHQVRNLk 864 (933)
-|.+-+|.-..||+||||+|.+||+.|.-
T Consensus 328 ~V~ge~~~~~~GD~~~iP~g~~H~~~N~g 356 (394)
T 3bu7_A 328 IVGGKRFDWSEHDIFCVPAWTWHEHCNTQ 356 (394)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEEECC
T ss_pred EECCEEEEEeCCCEEEECCCCeEEeEeCC
Confidence 35677899999999999999999999974
No 163
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=58.57 E-value=3.4 Score=42.62 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=25.7
Q ss_pred HhCccceEEEeecCceeEecCCCccccccccc
Q 002348 834 EFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 834 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
+|-+..=++.=..||.+|++|||||+.+|.-.
T Consensus 198 ~~~~~~~~~~l~~GD~~~~~~~~pH~~~n~g~ 229 (246)
T 1sfn_A 198 LYKLEENYYPVTAGDIIWMGAHCPQWYGALGR 229 (246)
T ss_dssp EEEETTEEEEEETTCEEEECTTCCEEEEEESS
T ss_pred EEEECCEEEEcCCCCEEEECCCCCEEEEcCCC
Confidence 35555666677889999999999999999643
No 164
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=58.15 E-value=4.6 Score=39.79 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.0
Q ss_pred ceEEEeecCceeEecCCCccccccccc
Q 002348 839 PWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 839 pWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
.-++.=..||+++||+|.||..+|.-+
T Consensus 82 ~~~~~l~~GDv~~~P~g~~H~~~N~g~ 108 (178)
T 1dgw_A 82 RDTYKLDQGDAIKIQAGTPFYLINPDN 108 (178)
T ss_dssp EEEEEEETTEEEEECTTCCEEEEECCS
T ss_pred cEEEEECCCCEEEECCCCeEEEEeCCC
Confidence 346667889999999999999999854
No 165
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=57.89 E-value=4.9 Score=44.24 Aligned_cols=42 Identities=31% Similarity=0.726 Sum_probs=32.7
Q ss_pred cCCCCccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.....|.-|...-...+.. .|+ .. ||..|+..+ ..||.||..
T Consensus 293 ~~~~~C~IC~~~~~~~v~l--pCg-H~~fC~~C~~~~----------~~CP~CR~~ 335 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFI--PCG-HLVVCQECAPSL----------RKCPICRGI 335 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEE--TTC-CEEECTTTGGGC----------SBCTTTCCB
T ss_pred cCCCCCCccCCcCCceEEc--CCC-ChhHhHHHHhcC----------CcCCCCCCC
Confidence 4568999999876654432 688 66 999999977 589999974
No 166
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=57.30 E-value=2.1 Score=40.75 Aligned_cols=37 Identities=22% Similarity=0.478 Sum_probs=29.7
Q ss_pred cCCCCccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002348 197 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 234 (933)
Q Consensus 197 ~~~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~ 234 (933)
.....|..|..+- ..+.-.|+.|+ ..||..|...+.+
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG-~vfC~~Cs~~~~~ 105 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCG-NIFCAECSAKNAL 105 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTC-CEECGGGSCEEEC
T ss_pred CCCCCCcCcCCccccccccccCCCCC-eEEChHHhCCccc
Confidence 4456899998865 35678999999 8999999988754
No 167
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=56.80 E-value=7.2 Score=39.17 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=25.6
Q ss_pred EEEeecCceeEecCCCccccccccccceecccccCc
Q 002348 841 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 876 (933)
Q Consensus 841 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 876 (933)
++.=..||.|+||||.||...+-..--=+|+.|-++
T Consensus 123 ~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~~ 158 (179)
T 1zrr_A 123 QVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDN 158 (179)
T ss_dssp EEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECC
T ss_pred EEEECCCCEEEECCCCeEeeecCCCceEEEEEeccC
Confidence 455689999999999999988866532234444443
No 168
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=55.99 E-value=9.3 Score=34.96 Aligned_cols=59 Identities=19% Similarity=0.431 Sum_probs=43.1
Q ss_pred ccCCCCccccccCCC-CceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCcccCcccccc
Q 002348 196 ELERIKCHQCMKSER-KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHT 260 (933)
Q Consensus 196 k~~~~~CHQCrqkt~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~CNCs~Clr~ 260 (933)
..+...|..|..... ..++.|..|. ..|=..||......+ ....|.||.|. .|.+|.+.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~-~~~H~~Cl~~~~~~~--~~~~W~C~~C~---~C~~C~~~ 63 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCG-QHYHGMCLDIAVTPL--KRAGWQCPECK---VCQNCKQS 63 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSC-CEECTTTTTCCCCTT--TSTTCCCTTTC---CCTTTCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCC-CCcChHHhCCccccc--cccCccCCcCC---cccccCcc
Confidence 346678999987763 4569999999 778888988655322 24579999987 57777654
No 169
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=55.56 E-value=3.3 Score=44.45 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.1
Q ss_pred eEEEeecCceeEecCCCcccccccc
Q 002348 840 WTFEQKLGEAVFIPAGCPHQVRNLK 864 (933)
Q Consensus 840 Wtf~Q~lGEAVFIPAGCPHQVRNLk 864 (933)
-++.=..||+++||+|.||..+|.-
T Consensus 96 ~~~~l~~GD~~~ip~g~~H~~~n~~ 120 (361)
T 2vqa_A 96 EIADVDKGGLWYFPRGWGHSIEGIG 120 (361)
T ss_dssp EEEEEETTEEEEECTTCEEEEEECS
T ss_pred EEEEEcCCCEEEECCCCeEEEEeCC
Confidence 4566778999999999999999986
No 170
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=55.37 E-value=2.4 Score=37.39 Aligned_cols=38 Identities=24% Similarity=0.590 Sum_probs=30.5
Q ss_pred ccCCCCccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002348 196 ELERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 234 (933)
Q Consensus 196 k~~~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~ 234 (933)
+.....|..|.++- ..+.-.|+.|+ ..||..|..++.+
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG-~v~C~~Cs~~~~~ 55 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCG-HIFCNTCSSNELA 55 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTC-CEECSGGGCEEEC
T ss_pred CccCCcccCcCCcccCccccccCCCCC-CEEChHHhCCeee
Confidence 34566899999875 35678999999 9999999998754
No 171
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=54.40 E-value=9.7 Score=34.38 Aligned_cols=46 Identities=13% Similarity=-0.044 Sum_probs=34.5
Q ss_pred CCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 198 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 198 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
....|--|..--.+.++ ..|+...||..||..|..+ ...||+|+..
T Consensus 21 ~~~~CpI~~~~m~dPV~--~~cG~htf~r~cI~~~l~~------~~~cP~~~~~ 66 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVV--LPSSRVTVDRSTIARHLLS------DQTDPFNRSP 66 (98)
T ss_dssp TTTBCTTTCSBCSSEEE--CTTTCCEEEHHHHHHHTTT------SCBCTTTCSB
T ss_pred HhcCCcCccccccCCeE--CCCCCeEECHHHHHHHHHh------CCCCCCCCCC
Confidence 45678888876666554 3577678999999999864 3589999863
No 172
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=54.38 E-value=4.7 Score=40.61 Aligned_cols=48 Identities=19% Similarity=0.477 Sum_probs=35.2
Q ss_pred CCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 199 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 199 ~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
...|..|+.. +.++.|-.|. ..|-..|+..-..... .-.|.||.|+..
T Consensus 2 ~~~C~~C~~~--g~ll~Cd~C~-~~~H~~Cl~p~l~~~p--~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP--GDLVMCNQCE-FCFHLDCHLPALQDVP--GEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC--SSCCCCTTTC-CBCCSTTSTTCCSSCC--CTTCCTTTTSCS
T ss_pred CCcCccCCCC--CceeECCCCC-chhccccCCCCcccCC--CCCCCCcCccCC
Confidence 3568999866 4588999999 7798889864333222 346999999865
No 173
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=53.79 E-value=5.3 Score=33.04 Aligned_cols=48 Identities=21% Similarity=0.552 Sum_probs=32.7
Q ss_pred cCCCCccccccCCCCceEecCcCCCCc-ccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKV-YCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~-FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.....|--|.......++.=..|+ .. ||..|+.++.. ..+.||.||..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCg-H~~~C~~C~~~~~~------~~~~CPiCR~~ 53 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTG-HLVTCFHCARRLKK------AGASCPICKKE 53 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEE-EEEECHHHHHHHHH------TTCBCTTTCCB
T ss_pred CcCCCCcccCCcCCCeEEEecCCC-CHhHHHHHHHHHHH------hCCcCCCcCch
Confidence 345678889877655444333566 44 99999997652 23799999973
No 174
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=53.74 E-value=5.3 Score=45.99 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=25.0
Q ss_pred ecCceeEecCCCccccccccccceecccccCc
Q 002348 845 KLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 876 (933)
Q Consensus 845 ~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 876 (933)
..||+|+||||.||-..|.-+--=|++-++.+
T Consensus 118 ~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d~ 149 (493)
T 2d5f_A 118 NEGDVLVIPPGVPYWTYNTGDEPVVAISLLDT 149 (493)
T ss_dssp ETTEEEEECTTCCEEEEECSSSCEEEEEEECT
T ss_pred cCCCEEEECCCCcEEEEeCCCCCEEEEEEecC
Confidence 67999999999999999998754455444443
No 175
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=53.46 E-value=4.4 Score=41.76 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=24.4
Q ss_pred ccceEEEeecCceeEecCCCcccccccccc
Q 002348 837 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSC 866 (933)
Q Consensus 837 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSC 866 (933)
|..=++.=..||+++||||.||+++|...+
T Consensus 83 ~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~ 112 (246)
T 1sfn_A 83 VGGETRTLREYDYVYLPAGEKHMLTAKTDA 112 (246)
T ss_dssp CSSCEEEECTTEEEEECTTCCCEEEEEEEE
T ss_pred ECCEEEEECCCCEEEECCCCCEEEEeCCCE
Confidence 444466677899999999999999998544
No 176
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=52.81 E-value=6.1 Score=39.51 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=26.4
Q ss_pred EEEeecCceeEecCCCccccccccccceecccccCc
Q 002348 841 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 876 (933)
Q Consensus 841 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 876 (933)
++.=..||+| ||+|.||+.+|.-.---..+-.++|
T Consensus 119 ~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V~~P 153 (172)
T 3es1_A 119 KRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFILIE 153 (172)
T ss_dssp EEEECTTCEE-EECSCCBEEECCSSSCEEEEEEEEE
T ss_pred EEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEEEcC
Confidence 4556799999 9999999999987654444444454
No 177
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=52.23 E-value=3.6 Score=34.01 Aligned_cols=48 Identities=27% Similarity=0.669 Sum_probs=35.7
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCC
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 249 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 249 (933)
.+...|..|++. +.++.|-.|. ..|=..|+..-...++ .-.|.||.|.
T Consensus 3 ~~~~~C~vC~~~--g~ll~Cd~C~-~~fH~~Cl~ppl~~~p--~g~W~C~~C~ 50 (60)
T 2puy_A 3 IHEDFCSVCRKS--GQLLMCDTCS-RVYHLDCLDPPLKTIP--KGMWICPRCQ 50 (60)
T ss_dssp CCCSSCTTTCCC--SSCEECSSSS-CEECGGGSSSCCSSCC--CSCCCCHHHH
T ss_pred CCCCCCcCCCCC--CcEEEcCCCC-cCEECCcCCCCcCCCC--CCceEChhcc
Confidence 456789999976 5699999999 7788889875433332 2379999884
No 178
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=52.03 E-value=5.2 Score=35.88 Aligned_cols=37 Identities=27% Similarity=0.544 Sum_probs=30.1
Q ss_pred ccCCCCccccccCC--CCceEecCcCCCCcccHhHHhhhC
Q 002348 196 ELERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWY 233 (933)
Q Consensus 196 k~~~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY 233 (933)
+.....|..|+++= ..+.-.|+.|+ ..||..|...+-
T Consensus 17 d~~~~~C~~C~~~F~~~~RrhhCr~CG-~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRRHHCRACG-KVFCGVCCNRKC 55 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTC-CEECGGGSCEEE
T ss_pred cccCCcCcCCCCcccchhhCccccCCC-CEECCcccCCee
Confidence 35567899999765 35678999999 999999998874
No 179
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=51.82 E-value=6.1 Score=34.89 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=30.3
Q ss_pred ccCCCCccccccCC--CCceEecCcCCCCcccHhHHhhhC
Q 002348 196 ELERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWY 233 (933)
Q Consensus 196 k~~~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY 233 (933)
+.....|..|+++= ..+.-.|+.|+ ..||..|..++.
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG-~v~C~~Cs~~~~ 56 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCG-YVLCGDCSRHRA 56 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTC-CEECTGGGCCEE
T ss_pred CCCCCCCcCcCCccccchhcccccCCC-cEEChHHhCCeE
Confidence 35567899999875 35678999999 999999998874
No 180
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=51.52 E-value=5.8 Score=40.46 Aligned_cols=48 Identities=10% Similarity=0.109 Sum_probs=34.6
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCcc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 252 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~C 252 (933)
.....|.-|..--.+.++ ..|+ ..||..||..|..+. ...||+|+...
T Consensus 206 ~~~~~c~i~~~~~~dPv~--~~~g-h~f~~~~i~~~~~~~-----~~~cP~~~~~~ 253 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCI--TPSG-ITYDRKDIEEHLQRV-----GHFNPVTRSPL 253 (281)
T ss_dssp CSTTBCTTTCSBCSSEEE--CSSC-CEEETTHHHHHHHHT-----CSSCTTTCCCC
T ss_pred CcccCCcCcCCHhcCCeE--CCCC-CEECHHHHHHHHHHC-----CCCCcCCCCCC
Confidence 356678888877666565 4599 999999999997421 22499998643
No 181
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=51.50 E-value=7.6 Score=34.33 Aligned_cols=36 Identities=28% Similarity=0.917 Sum_probs=26.9
Q ss_pred cCCCCc-ccccCcccccc----ccccccCcCCcccchhchH
Q 002348 323 CGNDER-VYCNHCATSII----DLHRSCPKCSYELCLTCCK 358 (933)
Q Consensus 323 ~~~DER-vyCDnCkTSI~----D~HRSC~~CsYDLCL~CC~ 358 (933)
+..+.+ .||-+|.+.|. .....|+.|++.+|..|-.
T Consensus 19 v~~~~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 19 LMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp CCSCCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred HhcCCCEeECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 334444 47999999764 3446899999999999964
No 182
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.41 E-value=6.1 Score=34.37 Aligned_cols=36 Identities=25% Similarity=0.679 Sum_probs=26.3
Q ss_pred ccCCCCccccccCCCCc---eEecCcCCCCcccHhHHhhhCCCC
Q 002348 196 ELERIKCHQCMKSERKY---VVPCGKCRTKVYCIQCIKQWYPKM 236 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~---~v~C~~C~r~~FC~~CL~~rY~e~ 236 (933)
+....+|..|+++..-. ...| .|+ ..||. .-||++.
T Consensus 12 ~~~~~rC~~C~kk~gL~~~egf~C-rCg-~~FC~---~HRy~e~ 50 (67)
T 1x4w_A 12 QKSRRRCFQCQTKLELVQQELGSC-RCG-YVFCM---LHRLPEQ 50 (67)
T ss_dssp CSCTTBCSSSCCBCCHHHHHHHCC-SSS-CCCCT---TTCSTGG
T ss_pred CccCCcchhhCCeecccccCceEe-cCC-CEehh---ccCCccc
Confidence 34457899999987622 1589 899 88976 6788764
No 183
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.30 E-value=5.3 Score=35.23 Aligned_cols=38 Identities=21% Similarity=0.474 Sum_probs=30.9
Q ss_pred ccCCCCccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002348 196 ELERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 234 (933)
Q Consensus 196 k~~~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~ 234 (933)
+.....|..|+++= ..+.-.|+.|+ ..||..|..++.+
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG-~vfC~~Cs~~~~~ 50 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCG-NSFCSRCCSFKVP 50 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSC-CEECTTTSCEEEC
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCC-cEEChhhcCCcee
Confidence 45667899999875 35678999999 8999999987654
No 184
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=50.86 E-value=5.5 Score=45.47 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=26.3
Q ss_pred eecCceeEecCCCccccccccccceecccccCccc
Q 002348 844 QKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 878 (933)
Q Consensus 844 Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 878 (933)
=+.||+|+||||.||-..|.-+--=+++-++++.|
T Consensus 131 l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~n 165 (459)
T 2e9q_A 131 FREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRN 165 (459)
T ss_dssp EETTEEEEECTTCCEEEEECSSSCEEEEEEEESSS
T ss_pred ecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCCC
Confidence 35699999999999999999865555554444433
No 185
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=50.69 E-value=5.2 Score=41.74 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=30.5
Q ss_pred cCCcccCccccCHHHHHHHHHHhCcc-ceEEEeecCceeEecCCCcccccccc
Q 002348 813 IHPIHDQCFYLSSEHKKKLKEEFGVE-PWTFEQKLGEAVFIPAGCPHQVRNLK 864 (933)
Q Consensus 813 ~dPIHDQ~fYLt~ehk~rLkEEyGVe-pWtf~Q~lGEAVFIPAGCPHQVRNLk 864 (933)
.|| ++|.+|+=... -||.|+ .=++.=..||.||||+|.||.+|+..
T Consensus 149 sHp-~EEiy~VLsG~-----~e~~v~~g~~~~l~pGd~v~ipsgv~Ha~rt~d 195 (217)
T 4b29_A 149 EHL-PEELYSVVSGR-----ALFHLRNAPDLMLEPGQTRFHPANAPHAMTTLT 195 (217)
T ss_dssp ECS-SEEEEEEEEEC-----EEEEETTSCCEEECTTCEEEECTTCCEEEECCS
T ss_pred CCC-CceEEEEEeCC-----EEEEECCCCEEecCCCCEEEcCCCCceeEEECC
Confidence 566 45655542111 135555 44566789999999999999998743
No 186
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.64 E-value=3.7 Score=37.06 Aligned_cols=53 Identities=21% Similarity=0.525 Sum_probs=37.5
Q ss_pred cccCCCCccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 195 KELERIKCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 195 kk~~~~~CHQCrqkt-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
...+...|..|++.. ...++.|-.|. ..|=..||..-..++. .-.|.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~-~~~H~~Cl~Ppl~~~P--~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCD-DNYHIFCLLPPLPEIP--RGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTC-CEECSSSSSSCCSSCC--SSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCC-chhccccCCCCcccCC--CCCcCCccCcC
Confidence 346677899999887 46799999999 5677777763332222 23699999853
No 187
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=49.53 E-value=10 Score=38.71 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=27.6
Q ss_pred EEEeecCceeEecCCCccccccccccceecccccCcc
Q 002348 841 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 877 (933)
Q Consensus 841 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 877 (933)
++.=..||.|+||||.||...+-.+--=+|+.|-+++
T Consensus 128 ~i~v~~GDlIiIPaG~~H~f~~~~~~~~~airlF~~~ 164 (191)
T 1vr3_A 128 RISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGE 164 (191)
T ss_dssp EEEEETTEEEEECTTCCEEEEECTTCCEEEEEEESSS
T ss_pred EEEECCCCEEEECcCCcCCcccCCCCCEEEEEEECCC
Confidence 6777899999999999999887655333455555554
No 188
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=49.34 E-value=12 Score=34.47 Aligned_cols=28 Identities=29% Similarity=0.978 Sum_probs=22.9
Q ss_pred CcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 217 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 217 ~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
..|+ ..|+..||..|... ...||.||..
T Consensus 71 ~~C~-H~FH~~Ci~~Wl~~------~~~CP~Cr~~ 98 (106)
T 3dpl_R 71 GVCN-HAFHFHCISRWLKT------RQVCPLDNRE 98 (106)
T ss_dssp ETTS-CEEEHHHHHHHHTT------CSBCSSSCSB
T ss_pred cccC-cEECHHHHHHHHHc------CCcCcCCCCc
Confidence 4688 89999999999753 3589999873
No 189
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=49.31 E-value=7.5 Score=33.44 Aligned_cols=48 Identities=23% Similarity=0.588 Sum_probs=35.5
Q ss_pred CccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 201 KCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 201 ~CHQCrqkt-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
.|+.|++.+ .+.++.|-.|. ..|=..||..-...+. +...|.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~-~~yH~~Cl~Ppl~~~P-~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECD-MAFHIYCLDPPLSSVP-SEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTC-CEEEGGGSSSCCSSCC-SSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCC-CceecccCCCCcCCCC-CCCCcCCcCccC
Confidence 678888876 57789999999 6777888875444433 233899999974
No 190
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=49.09 E-value=5.4 Score=38.62 Aligned_cols=45 Identities=22% Similarity=0.581 Sum_probs=32.8
Q ss_pred CCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 198 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 198 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
....|--|...-...+ .+ .|+ -.||..||.+|... -...||.||.
T Consensus 17 ~~~~C~IC~~~~~~pv-~~-~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~ 61 (170)
T 3hcs_A 17 SKYECPICLMALREAV-QT-PCG-HRFCKACIIKSIRD-----AGHKCPVDNE 61 (170)
T ss_dssp GGGBCTTTCSBCSSEE-EC-TTS-CEEEHHHHHHHHHH-----HCSBCTTTCC
T ss_pred CCCCCCCCChhhcCcE-EC-CCC-CHHHHHHHHHHHHh-----CCCCCCCCcc
Confidence 4467888887655544 44 799 89999999999742 1238999875
No 191
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=48.38 E-value=5.5 Score=42.05 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=25.3
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
|-+..=++.=..||.+|+|+||||+.+|.-.
T Consensus 225 ~~~~~~~~~v~~GD~~~~~~~~~h~~~n~g~ 255 (278)
T 1sq4_A 225 YRLNQDWVEVEAGDFMWLRAFCPQACYSGGP 255 (278)
T ss_dssp EEETTEEEEEETTCEEEEEESCCEEEECCSS
T ss_pred EEECCEEEEeCCCCEEEECCCCCEEEEcCCC
Confidence 5555556777899999999999999999654
No 192
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=48.30 E-value=10 Score=40.68 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=38.6
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCC--CCCcc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPF--CRRNC 252 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~--CRg~C 252 (933)
....+|.-|..--...++ ...|+ ..||..||..|..+. -.+.||+ |+..+
T Consensus 179 ~~el~CPIcl~~f~DPVt-s~~CG-HsFcR~cI~~~~~~~----~~~~CPvtGCr~~l 230 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLI-SRKCN-HVFDRDGIQNYLQGY----TTRDCPQAACSQVV 230 (267)
T ss_dssp BCCSBCTTTSSBCSSEEE-ESSSC-CEEEHHHHHHHSTTC----SCEECSGGGCSCEE
T ss_pred ceeeECcCccCcccCCee-eCCCC-CcccHHHHHHHHHhC----CCCCCCcccccCcC
Confidence 567789999987666554 45799 899999999998642 3489999 99843
No 193
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=48.28 E-value=8 Score=39.94 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=24.5
Q ss_pred CccceEEEeecCceeEecCCCccccccccc
Q 002348 836 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 836 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
-|..=++.=..||++++|||.||+.+|.-+
T Consensus 95 ~~~~~~~~L~~Gd~~~~~~~~~H~~~N~~~ 124 (261)
T 1rc6_A 95 KAEGKTFALSEGGYLYCPPGSLMTFVNAQA 124 (261)
T ss_dssp EETTEEEEEETTEEEEECTTCCCEEEECSS
T ss_pred EECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 344456677899999999999999999854
No 194
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=48.28 E-value=5.7 Score=42.37 Aligned_cols=24 Identities=8% Similarity=0.295 Sum_probs=20.6
Q ss_pred EEEeecCceeEecCCCcccccccc
Q 002348 841 TFEQKLGEAVFIPAGCPHQVRNLK 864 (933)
Q Consensus 841 tf~Q~lGEAVFIPAGCPHQVRNLk 864 (933)
++.=..||++++|||.|||++|-.
T Consensus 110 ~~~L~~Gds~y~p~~~~H~~~N~~ 133 (266)
T 4e2q_A 110 SKKLTVDSYAYLPPNFHHSLDCVE 133 (266)
T ss_dssp CEEECTTEEEEECTTCCCEEEESS
T ss_pred EEEEcCCCEEEECCCCCEEEEeCC
Confidence 455578999999999999999954
No 195
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=47.89 E-value=5.5 Score=37.92 Aligned_cols=37 Identities=22% Similarity=0.432 Sum_probs=26.8
Q ss_pred cCCCCccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002348 197 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 234 (933)
Q Consensus 197 ~~~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~ 234 (933)
.....|..|..+= ..+.-.|++|+ ..||..|..++.+
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG-~ifC~~Cs~~~~~ 55 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCK-KNFCMTCSSQVGN 55 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTC-CEECGGGEEC---
T ss_pred cccCcccCcCCccccccccccCCCCC-CeeCHHHhCCCCC
Confidence 4457899999865 35678999999 9999999998765
No 196
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=47.69 E-value=6.9 Score=34.45 Aligned_cols=48 Identities=23% Similarity=0.604 Sum_probs=34.3
Q ss_pred CccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 201 KCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 201 ~CHQCrqkt-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
.|+.|++.. .+.++.|-.|. ..|=..||.---..+.. ...|.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~-~~yH~~Cl~PpL~~~P~-g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECD-MAFHIYCLDPPLSSVPS-EDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTC-CEEETTTSSSCCSSCCS-SSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCC-CccCcccCCCcccCCCC-CCceECcCccc
Confidence 688999887 46789999999 67778887743333322 33399999985
No 197
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=47.38 E-value=12 Score=33.81 Aligned_cols=46 Identities=11% Similarity=-0.002 Sum_probs=34.8
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
.....|-=|..--.+.++- .|+ ..||..||..|... ...||+|+..
T Consensus 27 p~~~~CpI~~~~m~dPV~~--~cG-htf~r~~I~~~l~~------~~~cP~~~~~ 72 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRL--PSG-TIMDRSIILRHLLN------SPTDPFNRQT 72 (100)
T ss_dssp STTTBCTTTCSBCSSEEEE--TTT-EEEEHHHHHHHTTS------CSBCSSSCCB
T ss_pred cHhhCCcCccCcccCCeEC--CCC-CEEchHHHHHHHHc------CCCCCCCCCC
Confidence 3457788887766665653 488 88999999999864 3589999863
No 198
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=46.68 E-value=15 Score=31.77 Aligned_cols=36 Identities=22% Similarity=0.576 Sum_probs=27.8
Q ss_pred ccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCC
Q 002348 196 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKM 236 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~ 236 (933)
+.....|..|+++.--....| .|+ +.||. .-||++.
T Consensus 12 k~~~~rC~~C~kkvgl~~f~C-rCg-~~FC~---~HRy~e~ 47 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGLTGFMC-RCG-TTFCG---SHRYPEV 47 (64)
T ss_dssp CSSCCCCTTTCCCCCTTCEEC-SSS-CEECT---TTCSTTT
T ss_pred CCcCCcChhhCCccCccCEEe-ecC-CEecc---ccCCccc
Confidence 455688999999865446899 699 88975 6789875
No 199
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=46.48 E-value=7.6 Score=45.00 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=26.6
Q ss_pred ecCceeEecCCCccccccccccceecccccCccc
Q 002348 845 KLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 878 (933)
Q Consensus 845 ~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 878 (933)
..||+|+||||.||-..|.-+--=||+-++.+-|
T Consensus 131 ~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n 164 (510)
T 3c3v_A 131 NEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNN 164 (510)
T ss_dssp CTTEEEEECTTCEEEEEECSSSCEEEEEEECTTB
T ss_pred cCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCC
Confidence 5699999999999999999875555655555554
No 200
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=46.31 E-value=8.7 Score=40.06 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=24.4
Q ss_pred CccceEEEeecCceeEecCCCccccccccc
Q 002348 836 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 836 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
.|..=++.=..||++++|||.||+.+|.-+
T Consensus 98 ~~~~~~~~L~~GD~~~~~~~~~H~~~N~~~ 127 (274)
T 1sef_A 98 SDGQETHELEAGGYAYFTPEMKMYLANAQE 127 (274)
T ss_dssp ECSSCEEEEETTEEEEECTTSCCEEEESSS
T ss_pred EECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 344446677789999999999999999854
No 201
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=45.21 E-value=9.9 Score=41.59 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=24.2
Q ss_pred ccceEEEeecCceeEecCCCccccccc
Q 002348 837 VEPWTFEQKLGEAVFIPAGCPHQVRNL 863 (933)
Q Consensus 837 VepWtf~Q~lGEAVFIPAGCPHQVRNL 863 (933)
|.+-+|.=..||+++||+|++||++|-
T Consensus 303 v~~~~~~~~~GD~~~vP~~~~H~~~n~ 329 (354)
T 2d40_A 303 IGNETFSFSAKDIFVVPTWHGVSFQTT 329 (354)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred ECCEEEEEcCCCEEEECCCCeEEEEeC
Confidence 456788889999999999999999994
No 202
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=44.76 E-value=2.4 Score=37.96 Aligned_cols=54 Identities=20% Similarity=0.468 Sum_probs=36.5
Q ss_pred ccCCCCccccccCCC---CceEecCcCCCCcccHhHHhhhCCCCc--hhhhhccCCCCCC
Q 002348 196 ELERIKCHQCMKSER---KYVVPCGKCRTKVYCIQCIKQWYPKMS--ELDVAEICPFCRR 250 (933)
Q Consensus 196 k~~~~~CHQCrqkt~---~~~v~C~~C~r~~FC~~CL~~rY~e~~--~edv~~~CP~CRg 250 (933)
+.....|..|++.+. +.++.|-.|. ..|=..|+.-...... ..+-.|.||.|+.
T Consensus 13 ~e~~~~C~vC~~~~~~~~~~ll~CD~C~-~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 13 MEMGLACVVCRQMTVASGNQLVECQECH-NLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp HHHCCSCSSSCCCCCCTTCCEEECSSSC-CEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCCCcCCCCCCCCCCCCCceEECCCCC-CeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 456788999999864 6799999999 6566666653332110 1133599998854
No 203
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=44.26 E-value=5.4 Score=37.64 Aligned_cols=26 Identities=27% Similarity=0.957 Sum_probs=0.0
Q ss_pred cCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 218 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 218 ~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
.|+ ..|+..||..|... ...||.||.
T Consensus 83 ~C~-H~FH~~CI~~Wl~~------~~~CP~Cr~ 108 (117)
T 4a0k_B 83 VCN-HAFHFHCISRWLKT------RQVCPLDNR 108 (117)
T ss_dssp ---------------------------------
T ss_pred CcC-ceEcHHHHHHHHHc------CCcCCCCCC
Confidence 588 89999999999864 357999986
No 204
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=44.02 E-value=8.8 Score=44.01 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=23.3
Q ss_pred EEeecCceeEecCCCccccccccccceecc
Q 002348 842 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 871 (933)
Q Consensus 842 f~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 871 (933)
..=+.||+|+||||.||-..|.-+--=|++
T Consensus 115 ~~l~~GDvi~iPaG~~h~~~N~G~~~l~~i 144 (476)
T 1fxz_A 115 YNFREGDLIAVPTGVAWWMYNNEDTPVVAV 144 (476)
T ss_dssp EEECTTEEEEECTTCEEEEEECSSSCEEEE
T ss_pred EEEeCCCEEEECCCCcEEEEeCCCCCEEEE
Confidence 344679999999999999999975434443
No 205
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=43.04 E-value=11 Score=42.37 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=24.4
Q ss_pred CccceEEEeecCceeEecCCCcccccc
Q 002348 836 GVEPWTFEQKLGEAVFIPAGCPHQVRN 862 (933)
Q Consensus 836 GVepWtf~Q~lGEAVFIPAGCPHQVRN 862 (933)
-|.+=++.-..||+|+||+|..|+++|
T Consensus 158 ~v~G~~~~~~~GD~i~~P~g~~H~~~N 184 (394)
T 3bu7_A 158 IVDGHKVELGANDFVLTPNGTWHEHGI 184 (394)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEEE
T ss_pred EECCEEEEEcCCCEEEECcCCCEEEEc
Confidence 345668999999999999999999999
No 206
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=42.45 E-value=14 Score=33.93 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=23.9
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc
Q 002348 835 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 864 (933)
Q Consensus 835 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 864 (933)
+-|..=++.=..||++|||+|.+|+.++-.
T Consensus 51 ~~i~~~~~~l~~Gd~~~i~p~~~H~~~~~~ 80 (164)
T 2arc_A 51 VKNQGREFVCRPGDILLFPPGEIHHYGRHP 80 (164)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECT
T ss_pred EEECCEEEEecCCeEEEEcCCCCEEEEeCC
Confidence 344555667789999999999999988764
No 207
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=42.23 E-value=7 Score=40.98 Aligned_cols=49 Identities=22% Similarity=0.569 Sum_probs=32.3
Q ss_pred CCccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 200 IKCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 200 ~~CHQCrqkt-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
-.|..|++.+ .+.++.|-.|. ..|=..||..--..++ +...|.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~-~~yH~~CL~PPL~~vP-~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECD-MAFHIYCLDPPLSSVP-SEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSC-CEECSCC--CCCCSCC-SSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCC-cceeCccCCCCcccCC-CCCCCCCcCCcC
Confidence 3799999876 46789999999 5677778874333332 233799999964
No 208
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=42.09 E-value=13 Score=31.78 Aligned_cols=51 Identities=20% Similarity=0.474 Sum_probs=36.6
Q ss_pred cCCCCccccccCCCC-ceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 197 LERIKCHQCMKSERK-YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~-~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
.+...|..|++...+ .++.|-.|. .-|=..|+.-.-... .+..|.||.|+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~-~wfH~~Cv~~~~~~~--~~~~w~C~~C~~ 67 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCD-DWYHWPCVGIMAAPP--EEMQWFCPKCAN 67 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSS-SEEEHHHHTCSSCCC--SSSCCCCTTTHH
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCC-cccccccCCCCccCC--CCCCEEChhccC
Confidence 345679999988754 689999999 777788887433221 235799999964
No 209
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=42.09 E-value=11 Score=37.18 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=28.7
Q ss_pred ecCceeEecCCCcccccccc----ccceec-----ccccCcc
Q 002348 845 KLGEAVFIPAGCPHQVRNLK----SCTKVA-----VDFVSPE 877 (933)
Q Consensus 845 ~lGEAVFIPAGCPHQVRNLk----SCIKVA-----lDFVSPE 877 (933)
..||.+++|+|.+|++.+.. -||-++ +-|+.|.
T Consensus 85 ~aGd~~~~P~g~~H~~~a~~~~~~gci~l~v~~GpL~~~~~~ 126 (165)
T 3cjx_A 85 TAGCYLYEPGGSIHQFNTPRDNEGQTEVIFMLSGCNVNFTQD 126 (165)
T ss_dssp ETTEEEEECTTCEECEECCTTCSSCEEEEEEEESCEEEECTT
T ss_pred CCCeEEEeCCCCceeeEeCCCCCCCcEEEEEEeccceecCCC
Confidence 58999999999999999998 897777 6777774
No 210
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.27 E-value=11 Score=33.05 Aligned_cols=48 Identities=23% Similarity=0.578 Sum_probs=33.0
Q ss_pred CccccccCC-CCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 201 KCHQCMKSE-RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 201 ~CHQCrqkt-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
.|..|.+.+ .+.++.|-.|. ..|=..||.--...+. +...|.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~-~~yH~~Cl~Ppl~~~P-~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECN-VAYHIYCLNPPLDKVP-EEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSC-CEEETTSSSSCCSSCC-CSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCC-ccccccccCCCccCCC-CCCCcCCcCccC
Confidence 677888765 56788999999 6677777763333332 223799999974
No 211
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=41.17 E-value=9.9 Score=32.68 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=27.1
Q ss_pred CCccccccCC--CCceEecCcCCCCcccHhHHhhhC
Q 002348 200 IKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWY 233 (933)
Q Consensus 200 ~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY 233 (933)
..|..|+++= ..+.-.|+.|+ ..||..|..++.
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG-~v~C~~Cs~~~~ 46 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCG-GVFCQEHSSNSI 46 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTC-CEECGGGSCEEE
T ss_pred CcccCCCCccCCccccccCCCCC-EEEcccccCCeE
Confidence 4799999865 35678999999 899999998664
No 212
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=40.78 E-value=7.8 Score=39.56 Aligned_cols=34 Identities=26% Similarity=0.614 Sum_probs=28.4
Q ss_pred CCCccccccCC--CCceEecCcCCCCcccHhHHhhhC
Q 002348 199 RIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWY 233 (933)
Q Consensus 199 ~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY 233 (933)
...|+.|+++= ..+.-.|+.|+ ..||..|...+.
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG-~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCG-QVFCGQCTAKQC 196 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTC-CEECSTTSCEEE
T ss_pred CCccCCCCCccCCcccccccCCcC-CEEChHHhCCee
Confidence 46899998765 35678999999 899999998775
No 213
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=40.26 E-value=8.2 Score=39.83 Aligned_cols=34 Identities=21% Similarity=0.641 Sum_probs=28.0
Q ss_pred CCCccccccCC--CCceEecCcCCCCcccHhHHhhhC
Q 002348 199 RIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWY 233 (933)
Q Consensus 199 ~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY 233 (933)
...|..|+++= ..+.-.|++|+ ..||..|..++-
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG-~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACG-QIFCGKCSSKYS 199 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTC-CEECTTTCCEEE
T ss_pred CCCCcCcCCCCCccccccccCCCc-CEeChhhcCCcc
Confidence 45899998765 35678999999 999999998764
No 214
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=39.66 E-value=11 Score=37.90 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=31.8
Q ss_pred ceE-EEeecCceeEecCCCccccccccccceecccccCccchHH
Q 002348 839 PWT-FEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDE 881 (933)
Q Consensus 839 pWt-f~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 881 (933)
+|+ ++..+||.|.||.|.+|...|.... |.++=||+-|-++
T Consensus 117 a~~~i~L~pGesvtIppg~~H~f~ageeg--vli~EvSt~~dDe 158 (175)
T 2y0o_A 117 VWHEIELEPGGQYTIPPNTKHWFQAGEEG--AVVTEMSSTSTDK 158 (175)
T ss_dssp CCEEEEECTTCEEEECTTCCEEEEEEEEE--EEEEEEEECCCGG
T ss_pred CCcEEEECCCCEEEECCCCcEEEEeCCCC--EEEEEEeCCCCCC
Confidence 344 5899999999999999999996554 6667777766554
No 215
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=39.58 E-value=11 Score=34.74 Aligned_cols=46 Identities=20% Similarity=0.470 Sum_probs=32.5
Q ss_pred CCceEecCcCCCCcccHhHHhhhCCCCch--hhhhccCCCCCCcccCcccccc
Q 002348 210 RKYVVPCGKCRTKVYCIQCIKQWYPKMSE--LDVAEICPFCRRNCNCSVCLHT 260 (933)
Q Consensus 210 ~~~~v~C~~C~r~~FC~~CL~~rY~e~~~--edv~~~CP~CRg~CNCs~Clr~ 260 (933)
.+.++.|..|+ ..|=..||...- +++. ....|.||.|+ .|.+|.+.
T Consensus 23 ~~~Ll~C~~C~-~~~H~~Cl~~~~-~~~~~~~~~~W~C~~C~---~C~vC~~~ 70 (112)
T 3v43_A 23 PEELISCADCG-NSGHPSCLKFSP-ELTVRVKALRWQCIECK---TCSSCRDQ 70 (112)
T ss_dssp CCCCEECTTTC-CEECHHHHTCCH-HHHHHHHTSCCCCTTTC---CBTTTCCC
T ss_pred chhceEhhhcC-CCCCCchhcCCH-HHHHHhhccccccccCC---ccccccCc
Confidence 45799999999 777788986321 1111 23469999998 58888764
No 216
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=38.26 E-value=9.3 Score=36.54 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=36.9
Q ss_pred cCCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCCC
Q 002348 813 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 856 (933)
Q Consensus 813 ~dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAGC 856 (933)
.=|.|...-.+.+.+-+.|+++|||..|.| +-||-|.|=||=
T Consensus 14 ~Ap~h~rrk~msa~LskeLr~ky~vr~~~I--kkGD~V~Vi~G~ 55 (120)
T 1vq8_T 14 RAPLHERHKQVRATLSADLREEYGQRNVRV--NAGDTVEVLRGD 55 (120)
T ss_dssp TCCGGGSGGGGEEEECHHHHHHHTCSEEEC--CTTCEEEECSST
T ss_pred cCCcchhhheeeCcCCHHHHHhhccccccc--cCCCEEEEEecC
Confidence 358999999999999899999999999875 679999999984
No 217
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=37.73 E-value=3 Score=35.59 Aligned_cols=52 Identities=21% Similarity=0.534 Sum_probs=37.0
Q ss_pred cccCCCCccccccCCC--CceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCC
Q 002348 195 KELERIKCHQCMKSER--KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 249 (933)
Q Consensus 195 kk~~~~~CHQCrqkt~--~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 249 (933)
.+....+|+-|.+.+. +.--.|..|. .+||.+|=-.+- +....+.|.|-.||
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh~C~yCk-~r~CaRCGg~v~--lr~~k~~WvC~lC~ 58 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGHNCSYCQ-TKFCARCGGRVS--LRSNKVMWVCNLCR 58 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCEEBTTTC-CEECTTSEEEEE--SSTTCEEEEEHHHH
T ss_pred ccCCcchhhhhccceeccCCCccccccC-CeeecccCCEee--ecCCeEEEEehhhh
Confidence 3567788999987773 4457888899 889998866433 23346789887765
No 218
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=37.33 E-value=68 Score=32.95 Aligned_cols=61 Identities=13% Similarity=0.324 Sum_probs=41.4
Q ss_pred hhhhHhhhhhcccCCCcccccccccCCCCc------ccccCcccccccc--ccccCcCCcccchhchHH
Q 002348 299 TQEIEFEASIQRVHSSKVGVSETLCGNDER------VYCNHCATSIIDL--HRSCPKCSYELCLTCCKE 359 (933)
Q Consensus 299 ~~E~EiEAkIqG~~~sei~I~~a~~~~DER------vyCDnCkTSI~D~--HRSC~~CsYDLCL~CC~E 359 (933)
+.+.+-+=|-+|+...+++...+.+..... -.|-.|.++.-=+ -.+|.+|+.-+|-.|+..
T Consensus 129 i~~~Y~~Lk~~G~~FP~~~~~damf~~~~~p~W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 129 VQDTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp HHHHHHHHHHHTCCCCCCCGGGGCCCCCCCCCCCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred HHHHHHHHHhcCCCcccchhHHHhhhcccccccccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 456666667788887666655554432221 2799998754333 358999999999999874
No 219
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=36.78 E-value=12 Score=32.61 Aligned_cols=44 Identities=14% Similarity=-0.002 Sum_probs=32.8
Q ss_pred CCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 198 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 198 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
....|-=|..--.+.++ ..|+ ..||..||..|..+ ...||+|+.
T Consensus 13 ~~~~CpI~~~~m~dPV~--~~cG-htf~r~~I~~~l~~------~~~cP~~~~ 56 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVR--LPSG-TVMDRSIILRHLLN------SPTDPFNRQ 56 (85)
T ss_dssp TTTBCTTTCSBCSSEEE--CTTS-CEEEHHHHHHHHHH------CSBCTTTCC
T ss_pred hheECcccCchhcCCeE--CCCC-CEECHHHHHHHHhc------CCCCCCCcC
Confidence 45677777766555554 3488 88999999999852 368999986
No 220
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=36.70 E-value=12 Score=42.04 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=32.3
Q ss_pred cCCcccCccccCHHHHHHHHHHhCc----cceEEEeecCceeEecCCCccccccc
Q 002348 813 IHPIHDQCFYLSSEHKKKLKEEFGV----EPWTFEQKLGEAVFIPAGCPHQVRNL 863 (933)
Q Consensus 813 ~dPIHDQ~fYLt~ehk~rLkEEyGV----epWtf~Q~lGEAVFIPAGCPHQVRNL 863 (933)
+||=.++.+|+-.-.- .+|| ...++.=..||+++||+|.+|-+.|.
T Consensus 65 Hh~~a~E~~yVl~G~g-----~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~ 114 (416)
T 1uij_A 65 HHADADFLLFVLSGRA-----ILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNP 114 (416)
T ss_dssp EEESEEEEEEEEESCE-----EEEEECSSCEEEEEECTTEEEEECTTCEEEEEEC
T ss_pred ccCCCceEEEEEeeEE-----EEEEEECCCCeEEEecCCCEEEECCCCeEEEEec
Confidence 3555566666544321 1333 35567778899999999999999999
No 221
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=36.26 E-value=15 Score=42.15 Aligned_cols=66 Identities=9% Similarity=0.025 Sum_probs=38.3
Q ss_pred cccCCcccCccccCHHHHH-HHHHHhCccceEEEeecCceeEecCCCccccccccccceecccccCc
Q 002348 811 QVIHPIHDQCFYLSSEHKK-KLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 876 (933)
Q Consensus 811 ~v~dPIHDQ~fYLt~ehk~-rLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 876 (933)
...||-.++.+|+..-.-+ .+-.+-|-+-.+..=..||.++||+|.||.+.|...-+.+..=|+||
T Consensus 353 pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP~G~~H~~~ng~~~l~~l~f~~s~ 419 (476)
T 1fxz_A 353 PHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTND 419 (476)
T ss_dssp EEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSTTEEEEEEESSS
T ss_pred ceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEECCCCeEEEEeCCCCEEEEEEECCC
Confidence 4467766676666543211 11111222223333578999999999999999964444444434455
No 222
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=36.22 E-value=8.6 Score=37.61 Aligned_cols=49 Identities=22% Similarity=0.710 Sum_probs=35.3
Q ss_pred ccCCCCccccccCC--CCceEecCcCCCCcccHhHHhhhCCCCchhh----hhccCCCCCCc
Q 002348 196 ELERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYPKMSELD----VAEICPFCRRN 251 (933)
Q Consensus 196 k~~~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~e~~~ed----v~~~CP~CRg~ 251 (933)
......| .|++.. .+..+.|-.|. .-|-..|+. ++..+ -.|.||.|+..
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~-~WfH~~Cv~-----~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQ-NWYHGRCVG-----ILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTC-CEEEHHHHT-----CCHHHHTTCSSCCCHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCC-chhChhhcC-----CchhhccCccCeecCCCcch
Confidence 3566788 888863 46689999999 889999984 33322 36999999763
No 223
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.86 E-value=12 Score=35.93 Aligned_cols=40 Identities=25% Similarity=0.462 Sum_probs=35.9
Q ss_pred CCcccCccccCHHHHHHHHHHhCccceEEEeecCceeEecCC
Q 002348 814 HPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAG 855 (933)
Q Consensus 814 dPIHDQ~fYLt~ehk~rLkEEyGVepWtf~Q~lGEAVFIPAG 855 (933)
=|.|...-++.+.+=+.|+++|||.-|.| +-||-|.|=+|
T Consensus 18 Ap~h~r~k~msa~LSkeLR~ky~~r~~~I--kkGD~V~Vi~G 57 (121)
T 3j21_U 18 APLHVRQKLMSAPLSRELREKYKVRNLPV--RVGDKVRIMRG 57 (121)
T ss_dssp CCTTGGGGGSEEEBCHHHHHHTCCSEEEC--CSSSEEEECSS
T ss_pred CCcchhhhhhcCcCCHHHHHHhCCccccc--ccCCEEEEeec
Confidence 47888888888888889999999999988 57999999998
No 224
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=34.74 E-value=22 Score=30.67 Aligned_cols=48 Identities=19% Similarity=0.547 Sum_probs=33.9
Q ss_pred cCCCCccccccCCCCceEecCc--CCCCcccHhHHhhhCCCCchh-hhhccCCCCCC
Q 002348 197 LERIKCHQCMKSERKYVVPCGK--CRTKVYCIQCIKQWYPKMSEL-DVAEICPFCRR 250 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~--C~r~~FC~~CL~~rY~e~~~e-dv~~~CP~CRg 250 (933)
.....| -|++...+.++.|-+ |.+.-|=..|+. ++.. .-.|.||.|+.
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg-----l~~~p~g~w~Cp~C~~ 64 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG-----LTTKPRGKWFCPRCSQ 64 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT-----CSSCCSSCCCCTTTSS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC-----cCcCCCCCEECCCCCc
Confidence 456788 699977788999999 775456666665 2221 24699999964
No 225
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=34.28 E-value=5.2 Score=33.37 Aligned_cols=50 Identities=22% Similarity=0.425 Sum_probs=34.7
Q ss_pred ccCCCCccccccCC---CCceEecCcCCCCcccHhHHhhhCCCCchh----hhhccCCCCC
Q 002348 196 ELERIKCHQCMKSE---RKYVVPCGKCRTKVYCIQCIKQWYPKMSEL----DVAEICPFCR 249 (933)
Q Consensus 196 k~~~~~CHQCrqkt---~~~~v~C~~C~r~~FC~~CL~~rY~e~~~e----dv~~~CP~CR 249 (933)
.++...|..|++.. .+.++.|-.|. ..|=..|+.- .++.+ +-.|.||.|.
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~-~~~H~~C~~p---~l~~~~~~p~~~W~C~~C~ 59 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCG-QGYHQLCHTP---HIDSSVIDSDEKWLCRQCV 59 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSC-CEEETTTSSS---CCCHHHHHSSCCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCC-hHHHhhhCCC---cccccccCCCCCEECCCCc
Confidence 46678899999874 37899999999 5555555543 33332 2359999885
No 226
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=33.09 E-value=9.1 Score=42.06 Aligned_cols=38 Identities=24% Similarity=0.527 Sum_probs=0.0
Q ss_pred ccCCCCccccccCC--CCceEecCcCCCCcccHhHHhhhCC
Q 002348 196 ELERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYP 234 (933)
Q Consensus 196 k~~~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~ 234 (933)
......|..|+..- ..+...|+.|+ ..||..|..++.+
T Consensus 372 ~~~~~~c~~c~~~f~~~~r~h~Cr~Cg-~~~C~~Cs~~~~~ 411 (434)
T 3mpx_A 372 VTHVMMCMNCGCDFSLTLRRHHCHACG-KIVCRNCSRNKYP 411 (434)
T ss_dssp -----------------------------------------
T ss_pred cccCCcCCCcCCCCCCcchhhhcccCc-CEeehhhCCCeee
Confidence 35567899999864 24568999999 8999999998875
No 227
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=31.70 E-value=20 Score=40.61 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.1
Q ss_pred ceEEEeecCceeEecCCCcccccccc
Q 002348 839 PWTFEQKLGEAVFIPAGCPHQVRNLK 864 (933)
Q Consensus 839 pWtf~Q~lGEAVFIPAGCPHQVRNLk 864 (933)
..++.=..||+++||+|.+|.+.|.-
T Consensus 102 ~~~~~l~~GDv~~iP~G~~H~~~N~g 127 (434)
T 2ea7_A 102 RDSYILEQGHAQKIPAGTTFFLVNPD 127 (434)
T ss_dssp EEEEEEETTEEEEECTTCEEEEEECC
T ss_pred CEEEEeCCCCEEEECCCccEEEEeCC
Confidence 45777788999999999999999995
No 228
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=31.19 E-value=20 Score=41.59 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=55.3
Q ss_pred CCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHH-HHHHHhCccceEEEeecCceeE
Q 002348 773 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKK-KLKEEFGVEPWTFEQKLGEAVF 851 (933)
Q Consensus 773 ~~~GAlWDIFrreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~-rLkEEyGVepWtf~Q~lGEAVF 851 (933)
..+|.+.-+... +.|-|.. |.--...+....+.-+....||-.++.+|+..-.-+ .+-.+-|-+-.+..=..||.++
T Consensus 351 ~~gG~v~~~~~~-~fP~L~~-l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~v 428 (510)
T 3c3v_A 351 PQAGSLKTANEL-NLLILRW-LGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLV 428 (510)
T ss_dssp TTTEEEEEECTT-TSTTHHH-HTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred CCCeEEEEeccc-cCccccc-ceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEE
Confidence 457777777664 5777632 110001111112222345678877787776544211 1111222222333357899999
Q ss_pred ecCCCccccccccccceecccccCc
Q 002348 852 IPAGCPHQVRNLKSCTKVAVDFVSP 876 (933)
Q Consensus 852 IPAGCPHQVRNLkSCIKVAlDFVSP 876 (933)
||+|.||-+.|...-+.+..=|+|+
T Consensus 429 iP~G~~H~~~Ng~e~l~~l~f~~s~ 453 (510)
T 3c3v_A 429 VPQNFAVAGKSQSDNFEYVAFKTDS 453 (510)
T ss_dssp ECTTCEEEEEECSSEEEEEEEESSS
T ss_pred ECCCCeEEEEeCCCCEEEEEEECCC
Confidence 9999999999964444444433344
No 229
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.00 E-value=13 Score=32.64 Aligned_cols=51 Identities=22% Similarity=0.582 Sum_probs=32.9
Q ss_pred CCCccccccCCCCc-eEecCcCCCCcccHhHHhhhCCCCchhh--hhccCCC--CCC
Q 002348 199 RIKCHQCMKSERKY-VVPCGKCRTKVYCIQCIKQWYPKMSELD--VAEICPF--CRR 250 (933)
Q Consensus 199 ~~~CHQCrqkt~~~-~v~C~~C~r~~FC~~CL~~rY~e~~~ed--v~~~CP~--CRg 250 (933)
..+|--|...-... .+.-..|+ ..||..||..+......+. ....||. |+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~Cg-H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~ 60 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQ-CIFCTLCLKQYVELLIKEGLETAISCPDAACPK 60 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTT-EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSS
T ss_pred CcCCcccCcccccccceEcCCCC-CcccHHHHHHHHHHHhhcCCcccccCccccCCC
Confidence 34677777554333 33444699 9999999998875322222 2478998 765
No 230
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=30.72 E-value=21 Score=41.14 Aligned_cols=58 Identities=17% Similarity=0.463 Sum_probs=40.3
Q ss_pred cCCCCccccccCC--CCceEecCcCCCCcccHhHHhhhCCCCchhh----hhccCCCCCCcccCccccccC
Q 002348 197 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYPKMSELD----VAEICPFCRRNCNCSVCLHTS 261 (933)
Q Consensus 197 ~~~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~e~~~ed----v~~~CP~CRg~CNCs~Clr~~ 261 (933)
.....| -|++.. .+.++.|-.|. .-|=+.|+. ++.++ -.|.||.|+..-.-+.-.+++
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~-~WfH~~Cvg-----l~~~~~~~~~~~~C~~C~~~~~~~~~k~~~ 98 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICK-DWFHGSCVG-----VEEHHAVDIDLYHCPNCAVLHGSSLMKKRR 98 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTC-CEEEHHHHT-----CCGGGGGGEEEBCCHHHHHHHCSCEECCCC
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCC-CceeeeecC-----cCcccccCCCEEECCCCcCCcCcchhcccc
Confidence 455667 787763 56789999999 778888884 33332 359999998766555554444
No 231
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=30.36 E-value=17 Score=32.54 Aligned_cols=31 Identities=19% Similarity=0.564 Sum_probs=28.3
Q ss_pred cccccCccccccccccccCcCCcccchhchH
Q 002348 328 RVYCNHCATSIIDLHRSCPKCSYELCLTCCK 358 (933)
Q Consensus 328 RvyCDnCkTSI~D~HRSC~~CsYDLCL~CC~ 358 (933)
...||.|...+..+.-.|..|.|+|=+.|-.
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~ 77 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDECDFDLHAKCAL 77 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTTCCCCCHHHHH
T ss_pred CeEeCCCCCcCCCcEEEcCCCCCeEcHHhcC
Confidence 4679999999999999999999999999974
No 232
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=29.52 E-value=25 Score=39.93 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.4
Q ss_pred eEEEeecCceeEecCCCcccccccc-cc
Q 002348 840 WTFEQKLGEAVFIPAGCPHQVRNLK-SC 866 (933)
Q Consensus 840 Wtf~Q~lGEAVFIPAGCPHQVRNLk-SC 866 (933)
.++.=+.||.++||+|.+|.+.|.- ++
T Consensus 128 ~~~~l~~GDv~~~P~G~~H~~~N~g~~~ 155 (445)
T 2cav_A 128 DTYKLDQGDAIKIQAGTPFYLINPDNNQ 155 (445)
T ss_dssp EEEEEETTEEEEECTTCCEEEEECCSSC
T ss_pred EEEEecCCCEEEECCCCcEEEEECCCCC
Confidence 4677788999999999999999996 44
No 233
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=29.38 E-value=13 Score=31.36 Aligned_cols=49 Identities=14% Similarity=0.466 Sum_probs=35.2
Q ss_pred ccCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCC
Q 002348 196 ELERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 249 (933)
Q Consensus 196 k~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 249 (933)
..+...|..|++. +.++.|-.|. ..|=..||..--..+. .-.|.||.|.
T Consensus 5 ~~~~~~C~vC~~~--g~ll~CD~C~-~~fH~~Cl~ppl~~~P--~g~W~C~~C~ 53 (66)
T 1xwh_A 5 QKNEDECAVCRDG--GELICCDGCP-RAFHLACLSPPLREIP--SGTWRCSSCL 53 (66)
T ss_dssp CSCCCSBSSSSCC--SSCEECSSCC-CEECTTTSSSCCSSCC--SSCCCCHHHH
T ss_pred CCCCCCCccCCCC--CCEEEcCCCC-hhhcccccCCCcCcCC--CCCeECcccc
Confidence 4567789999875 5699999999 6787888874332222 2469999885
No 234
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=28.71 E-value=26 Score=37.87 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=22.2
Q ss_pred EEEeecCceeEecCCCccccccccc
Q 002348 841 TFEQKLGEAVFIPAGCPHQVRNLKS 865 (933)
Q Consensus 841 tf~Q~lGEAVFIPAGCPHQVRNLkS 865 (933)
++.=..||.++||+|.+|.++|...
T Consensus 123 ~~~l~~GD~~~ip~g~~H~~~n~~~ 147 (385)
T 1j58_A 123 IDDVGEGDLWYFPSGLPHSIQALEE 147 (385)
T ss_dssp EEEEETTEEEEECTTCCEEEEEEEE
T ss_pred EEEeCCCCEEEECCCCeEEEEECCC
Confidence 5577899999999999999999865
No 235
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=28.52 E-value=20 Score=34.08 Aligned_cols=26 Identities=8% Similarity=-0.123 Sum_probs=22.3
Q ss_pred ecCceeEecCCCccc-cccccccceec
Q 002348 845 KLGEAVFIPAGCPHQ-VRNLKSCTKVA 870 (933)
Q Consensus 845 ~lGEAVFIPAGCPHQ-VRNLkSCIKVA 870 (933)
..||.+++|+|.+|+ +.+...|+=+.
T Consensus 89 ~~Gd~~~~p~g~~H~p~~~~e~~~~l~ 115 (145)
T 2o1q_A 89 IAPGYGYESANARHDKTEFPVASEFYM 115 (145)
T ss_dssp ESSEEEEECTTCEESCCEEEEEEEEEE
T ss_pred CCCEEEEECcCCccCCeECCCCeEEEE
Confidence 689999999999999 88888886443
No 236
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=28.44 E-value=30 Score=37.77 Aligned_cols=38 Identities=16% Similarity=0.378 Sum_probs=29.8
Q ss_pred CCCCcccccCcccccccccc---ccCcCCcccchhchHHhh
Q 002348 324 GNDERVYCNHCATSIIDLHR---SCPKCSYELCLTCCKEIC 361 (933)
Q Consensus 324 ~~DERvyCDnCkTSI~D~HR---SC~~CsYDLCL~CC~ELR 361 (933)
......+|++|...+.-+-+ .|..|++-+|-.|...+.
T Consensus 353 ~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 353 SFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp CCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC
T ss_pred cCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC
Confidence 34566799999998863322 599999999999988765
No 237
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.32 E-value=17 Score=35.93 Aligned_cols=35 Identities=23% Similarity=0.691 Sum_probs=30.0
Q ss_pred CcccccCcccc---ccccccccCcCCcccchhchHHhh
Q 002348 327 ERVYCNHCATS---IIDLHRSCPKCSYELCLTCCKEIC 361 (933)
Q Consensus 327 ERvyCDnCkTS---I~D~HRSC~~CsYDLCL~CC~ELR 361 (933)
..-.|.+|..+ +++--+-|..|.+.+|-.|+..++
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~ 104 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHP 104 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccC
Confidence 45689999998 788899999999999999995554
No 238
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=27.84 E-value=15 Score=42.35 Aligned_cols=121 Identities=11% Similarity=0.107 Sum_probs=62.8
Q ss_pred CCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHH-HHHHHhCccceEEEeecCceeE
Q 002348 773 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKK-KLKEEFGVEPWTFEQKLGEAVF 851 (933)
Q Consensus 773 ~~~GAlWDIFrreDvpKLreyL~kh~~Ef~h~~~~pv~~v~dPIHDQ~fYLt~ehk~-rLkEEyGVepWtf~Q~lGEAVF 851 (933)
..+|.+.-+... +.|-|.. |.--...+....+.-.....||=.++.+|+..-.-+ .+-.+.|-+-.+..=..||.++
T Consensus 346 ~~gG~v~~~~~~-~~P~L~~-lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~v 423 (493)
T 2d5f_A 346 PKAGRISTLNSL-TLPALRQ-FGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLV 423 (493)
T ss_dssp TTTEEEEEESTT-TSTTHHH-HTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred CCCeEEEEeccc-cCccccc-cceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEE
Confidence 456777777654 6777632 110011111111222234578877777776543211 1111222222233457899999
Q ss_pred ecCCCccccccccccceecccccCccchHHHHHHHHHhhcCCcccc
Q 002348 852 IPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHR 897 (933)
Q Consensus 852 IPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~ 897 (933)
||+|.||...|...-..+..=|.|+..-..- |+.=|+.+|.+-.
T Consensus 424 vP~G~~H~~~n~~e~~~~l~~~ts~~p~~~~--l~s~~~~~p~eVl 467 (493)
T 2d5f_A 424 VPQNFVVAEQGGEQGLEYVVFKTHHNAVSSY--IKDVFRAIPSEVL 467 (493)
T ss_dssp ECTTCEEEEEEEEEEEEEEEEESSTTCCEEE--HHHHHHHSCHHHH
T ss_pred ECCCCeEeeeeCCCCEEEEEEECCCCCccee--HHHHHHhCCHHHH
Confidence 9999999999976444443333232221111 2666777776543
No 239
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=27.32 E-value=46 Score=34.70 Aligned_cols=49 Identities=16% Similarity=0.441 Sum_probs=37.9
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCCc
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 251 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg~ 251 (933)
+.-..|..|+.--. .-..|.+|+ .+|=..|+.+|+... ..-.||.|...
T Consensus 178 ~~i~~C~iC~~iv~-~g~~C~~C~-~~~H~~C~~~~~~~~----~~~~CP~C~~~ 226 (238)
T 3nw0_A 178 DAVKICNICHSLLI-QGQSCETCG-IRMHLPCVAKYFQSN----AEPRCPHCNDY 226 (238)
T ss_dssp TTCCBCTTTCSBCS-SCEECSSSC-CEECHHHHHHHTTTC----SSCBCTTTCCB
T ss_pred CCCCcCcchhhHHh-CCcccCccC-hHHHHHHHHHHHHhC----CCCCCCCCCCC
Confidence 35889999997765 357999999 889999999998532 24589988763
No 240
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=27.08 E-value=44 Score=27.50 Aligned_cols=32 Identities=25% Similarity=0.596 Sum_probs=24.4
Q ss_pred cCCCCccccccCCCCceEecCcCCCCcccH-hHHhh
Q 002348 197 LERIKCHQCMKSERKYVVPCGKCRTKVYCI-QCIKQ 231 (933)
Q Consensus 197 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~-~CL~~ 231 (933)
.....|+.|.+. ....|+.|....||. .|-..
T Consensus 13 ~~~~~C~~C~~~---~~~~Cs~C~~v~YCs~~CQ~~ 45 (60)
T 2dj8_A 13 DSSESCWNCGRK---ASETCSGCNTARYCGSFCQHK 45 (60)
T ss_dssp CCSCCCSSSCSC---CCEECTTTSCCEESSHHHHHH
T ss_pred CCCcccccCCCC---CcccCCCCCCEeeeCHHHHHH
Confidence 456789999874 367999999889996 56554
No 241
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.29 E-value=1.9e+02 Score=24.82 Aligned_cols=47 Identities=23% Similarity=0.668 Sum_probs=33.4
Q ss_pred cCCCCccccccCC--CCceEecCcCCCCcccHhHHhhhCCCCchhh----hhccCCCCCC
Q 002348 197 LERIKCHQCMKSE--RKYVVPCGKCRTKVYCIQCIKQWYPKMSELD----VAEICPFCRR 250 (933)
Q Consensus 197 ~~~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~e~~~ed----v~~~CP~CRg 250 (933)
.....| -|++.. ....+.|-.|. .-|=..|+. ++.++ ..|.||.|+.
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~-~WfH~~Cvg-----l~~~~~~~~~~~~C~~C~~ 62 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQ-DWFHGSCVG-----IEEENAVDIDIYHCPDCEA 62 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTC-CEEEHHHHT-----CCHHHHTTCSBBCCTTTTT
T ss_pred CCccEE-EcCCccCCCCceEEcCCCC-CcEEeeecC-----cccccccCCCeEECCCccc
Confidence 556677 788865 56789999998 666667764 33332 4699999986
No 242
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=25.81 E-value=40 Score=32.51 Aligned_cols=37 Identities=22% Similarity=0.577 Sum_probs=30.2
Q ss_pred CCcccccCccccc-c--ccccccCcCCcccchhchHHhhc
Q 002348 326 DERVYCNHCATSI-I--DLHRSCPKCSYELCLTCCKEICE 362 (933)
Q Consensus 326 DERvyCDnCkTSI-~--D~HRSC~~CsYDLCL~CC~ELR~ 362 (933)
+..-.|.+|..+. | +--+-|..|.+.+|-.|+-....
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~ 92 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN 92 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCC
Confidence 4556899999887 3 56789999999999999887653
No 243
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=24.22 E-value=28 Score=39.92 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=22.1
Q ss_pred ecCceeEecCCCccccccccccceeccccc
Q 002348 845 KLGEAVFIPAGCPHQVRNLKSCTKVAVDFV 874 (933)
Q Consensus 845 ~lGEAVFIPAGCPHQVRNLkSCIKVAlDFV 874 (933)
+.||+|.||||.||=.-|.-.-==+++-++
T Consensus 150 ~~GDvi~iPaG~~~~~~N~g~e~L~~l~~~ 179 (466)
T 3kgl_A 150 RTGDTIATHPGVAQWFYNDGNQPLVIVSVL 179 (466)
T ss_dssp ETTEEEEECTTCEEEEECCSSSCEEEEEEE
T ss_pred cCCCEEEECCCCcEEEEeCCCCcEEEEEEE
Confidence 569999999999999999864433333333
No 244
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=23.79 E-value=55 Score=33.06 Aligned_cols=47 Identities=28% Similarity=0.550 Sum_probs=31.6
Q ss_pred CCCccccccCCC-----CceEecCcCCCCcccHhHHhhhCCCCchh----------hhhccCCCCCCc
Q 002348 199 RIKCHQCMKSER-----KYVVPCGKCRTKVYCIQCIKQWYPKMSEL----------DVAEICPFCRRN 251 (933)
Q Consensus 199 ~~~CHQCrqkt~-----~~~v~C~~C~r~~FC~~CL~~rY~e~~~e----------dv~~~CP~CRg~ 251 (933)
|..|--|++.-. ...+.|-.|. .-|=+.|.. ++.+ +..|.||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~-~W~H~~Cvg-----i~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCD-RWVHSKCEN-----LSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTC-CEEEGGGSS-----CCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCC-cccchhccc-----cCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 567888877642 2389999999 555556653 3332 247999999873
No 245
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=23.45 E-value=23 Score=33.08 Aligned_cols=13 Identities=31% Similarity=1.255 Sum_probs=11.6
Q ss_pred cccHhHHhhhCCC
Q 002348 223 VYCIQCIKQWYPK 235 (933)
Q Consensus 223 ~FC~~CL~~rY~e 235 (933)
.||..||.+||.+
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999999999964
No 246
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=23.27 E-value=23 Score=32.99 Aligned_cols=13 Identities=23% Similarity=1.035 Sum_probs=11.6
Q ss_pred cccHhHHhhhCCC
Q 002348 223 VYCIQCIKQWYPK 235 (933)
Q Consensus 223 ~FC~~CL~~rY~e 235 (933)
.||..||.+||.+
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999999999963
No 247
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=23.04 E-value=46 Score=29.12 Aligned_cols=35 Identities=26% Similarity=0.761 Sum_probs=27.8
Q ss_pred CCCCcccccCccccccccc---cccCcCCcccchhchHH
Q 002348 324 GNDERVYCNHCATSIIDLH---RSCPKCSYELCLTCCKE 359 (933)
Q Consensus 324 ~~DERvyCDnCkTSI~D~H---RSC~~CsYDLCL~CC~E 359 (933)
+.++...|..|..+ |.+. -+|..|+.-+|-.|+..
T Consensus 15 ~d~~~~~C~~C~~~-Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 15 KDDEATHCRQCEKE-FSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCCBCTTTCCB-CBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCccCCcccCcCCc-ccCccccccCCCCCCEEChHHhCC
Confidence 45667789999986 4444 48999999999999864
No 248
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=22.98 E-value=35 Score=39.11 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=25.6
Q ss_pred ecCceeEecCCCccccccccccceecccccCccc
Q 002348 845 KLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 878 (933)
Q Consensus 845 ~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 878 (933)
+.||+|+||||.+|=.-|--+-==|++-++.|-|
T Consensus 135 ~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n 168 (465)
T 3qac_A 135 REGDIFAMPAGVSHWAYNNGDQPLVAVILIDTAN 168 (465)
T ss_dssp ETTEEEEECTTCEEEEECCSSSCEEEEEEECTTS
T ss_pred cCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCC
Confidence 6799999999999999998655445555555444
No 249
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=22.88 E-value=17 Score=33.66 Aligned_cols=57 Identities=18% Similarity=0.482 Sum_probs=0.0
Q ss_pred CccccccCC--------CCceEecCcCCCCcccHhHHhhhCCCCchh-hhhccCCCCCCcccCccccccC
Q 002348 201 KCHQCMKSE--------RKYVVPCGKCRTKVYCIQCIKQWYPKMSEL-DVAEICPFCRRNCNCSVCLHTS 261 (933)
Q Consensus 201 ~CHQCrqkt--------~~~~v~C~~C~r~~FC~~CL~~rY~e~~~e-dv~~~CP~CRg~CNCs~Clr~~ 261 (933)
.|..|.... .+.++.|..|. ..|=..||.......... ...|.||.|. .|.+|.+..
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~-~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~---~C~~C~~~~ 68 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCG-RSGHPTCLQFTLNMTEAVKTYKWQCIECK---SCILCGTSE 68 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSC-CEECTTTTTCCHHHHHHHHHTTCCCGGGC---CCTTTTCCT
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCC-CccchhhCCChhhhhhccCCCccCccccC---ccCcccccC
No 250
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=22.57 E-value=31 Score=34.80 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=31.0
Q ss_pred CCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 199 RIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 199 ~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
...|-=|..--.+.++. .|+ ..||..||..|.... ...||+|+.
T Consensus 106 ~f~CPI~~elm~DPV~~--~~G-htfer~~I~~~l~~~-----~~tcP~t~~ 149 (179)
T 2f42_A 106 YLCGKISFELMREPCIT--PSG-ITYDRKDIEEHLQRV-----GHFDPVTRS 149 (179)
T ss_dssp GGBCTTTCSBCSSEEEC--TTS-CEEEHHHHHHHHHHT-----CSBCTTTCC
T ss_pred hhcccCccccCCCCeEC--CCC-CEECHHHHHHHHHhC-----CCCCCCCcC
Confidence 45566666655555654 588 899999999998431 126999985
No 251
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.42 E-value=48 Score=28.35 Aligned_cols=47 Identities=23% Similarity=0.708 Sum_probs=32.3
Q ss_pred cCCCCccccccCCC-CceEecCcCCCCcccHhHHhhhCCCCchh--------hhhccCCCCCC
Q 002348 197 LERIKCHQCMKSER-KYVVPCGKCRTKVYCIQCIKQWYPKMSEL--------DVAEICPFCRR 250 (933)
Q Consensus 197 ~~~~~CHQCrqkt~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~e--------dv~~~CP~CRg 250 (933)
.....| -|++... ..++.|-.|. .-|=..|+. ++.+ ...|.||.|+.
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~-~WfH~~Cvg-----l~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCE-EWFHGDCVG-----ISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSC-CEEEHHHHS-----CCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCC-CcEeCeEEc-----cchhhhhhccCCCCeEECcCCcC
Confidence 345778 6888775 4789999998 666667764 3332 24699998863
No 252
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=22.29 E-value=32 Score=29.72 Aligned_cols=49 Identities=20% Similarity=0.432 Sum_probs=36.9
Q ss_pred ccCCCCccccccCC---CCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCC
Q 002348 196 ELERIKCHQCMKSE---RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCR 249 (933)
Q Consensus 196 k~~~~~CHQCrqkt---~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 249 (933)
..+...|..|++.+ .+.++.|-.|. ..|=..|+.-. .+. +-.|.||.|+
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~-~~~H~~Cl~~~--~vP--~g~W~C~~C~ 64 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCN-LAVHQECYGVP--YIP--EGQWLCRHCL 64 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSC-CEEEHHHHTCS--SCC--SSCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCC-CccccccCCCC--cCC--CCCcCCccCc
Confidence 46678899999874 46799999999 67888888743 222 2469999885
No 253
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=22.27 E-value=43 Score=37.31 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=25.2
Q ss_pred cceEEEeecCceeEecCCCccccccccccc
Q 002348 838 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCT 867 (933)
Q Consensus 838 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCI 867 (933)
.+=+|.=..||++.||+|++||..|...|+
T Consensus 315 ~~~~~~w~~gD~fvvP~w~~h~~~n~~~a~ 344 (368)
T 3nw4_A 315 NGETTKLEKGDMFVVPSWVPWSLQAETQFD 344 (368)
T ss_dssp TTEEEEECTTCEEEECTTCCEEEEESSSEE
T ss_pred CCEEEEecCCCEEEECCCCcEEEEeCCCEE
Confidence 445688889999999999999999976554
No 254
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.15 E-value=26 Score=30.96 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=33.1
Q ss_pred CCCCccccccCCCCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCC--CCC
Q 002348 198 ERIKCHQCMKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPF--CRR 250 (933)
Q Consensus 198 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~--CRg 250 (933)
...+|--|..--.+.++ -..|+ ..||..||..|..+.....-...||+ |+.
T Consensus 6 ~~~~CPI~~~~~~dPV~-~~~cG-h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~ 58 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVK-NKVCG-HTYEEDAIVRMIESRQKRKKKAYCPQIGCSH 58 (94)
T ss_dssp SCCBCTTTCSBCSSEEE-ESSSC-CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCC
T ss_pred cEeECcCcCchhcCCEE-cCCCC-CeecHHHHHHHHHHccCcCCCCCCCcCcCcc
Confidence 45678888766555443 22488 89999999999842100012468998 764
No 255
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=22.03 E-value=57 Score=28.44 Aligned_cols=34 Identities=21% Similarity=0.737 Sum_probs=27.5
Q ss_pred CCcccccC--cccccc----ccccccC-----cCCcccchhchHH
Q 002348 326 DERVYCNH--CATSII----DLHRSCP-----KCSYELCLTCCKE 359 (933)
Q Consensus 326 DERvyCDn--CkTSI~----D~HRSC~-----~CsYDLCL~CC~E 359 (933)
+..+||-. |.+.|. +....|+ +|+|.+|..|-.+
T Consensus 23 ~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~ 67 (80)
T 2jmo_A 23 MGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEA 67 (80)
T ss_dssp CSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEE
T ss_pred CCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcc
Confidence 34999988 999885 3457898 9999999999643
No 256
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=21.65 E-value=46 Score=28.30 Aligned_cols=33 Identities=24% Similarity=0.648 Sum_probs=25.3
Q ss_pred CCCccccccCC-CCceEecCcCCCCcccH-hHHhhh
Q 002348 199 RIKCHQCMKSE-RKYVVPCGKCRTKVYCI-QCIKQW 232 (933)
Q Consensus 199 ~~~CHQCrqkt-~~~~v~C~~C~r~~FC~-~CL~~r 232 (933)
...|..|.... ...+-.|.+|+ .+||. .|.+.+
T Consensus 11 ~~~C~vC~~~~~~~akY~CPrC~-~rYCSl~C~k~H 45 (59)
T 1x4s_A 11 AGPCGFCPAGEVQPARYTCPRCN-APYCSLRCYRTH 45 (59)
T ss_dssp CEEECSSCTTCCEEECEECTTTC-CEESSHHHHHHH
T ss_pred CCcCcCCCCCcCCCccccCcCCC-CCccChHHHHHH
Confidence 46899998643 34477999999 88997 787764
No 257
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=21.47 E-value=46 Score=29.69 Aligned_cols=49 Identities=20% Similarity=0.460 Sum_probs=35.7
Q ss_pred cCCCCccccccCC---CCceEecCcCCCCcccHhHHhhhCCCCchhhhhccCCCCCC
Q 002348 197 LERIKCHQCMKSE---RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 250 (933)
Q Consensus 197 ~~~~~CHQCrqkt---~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 250 (933)
.+...|-.|++.+ .+.++.|-.|. ..|=..|+.-. .++ +-.|.||.|..
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~-~~fH~~Cl~p~--~vP--~g~W~C~~C~~ 74 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCN-LAVHQECYGVP--YIP--EGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSC-CCCCHHHHTCS--SCC--SSCCCCHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCC-chhhcccCCCC--ccC--CCceECccccC
Confidence 4557899999874 35799999999 67888898743 222 24799998853
No 258
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=21.30 E-value=24 Score=32.46 Aligned_cols=46 Identities=22% Similarity=0.607 Sum_probs=32.5
Q ss_pred CCCccccccC--CCCceEecC-cCCCCcccHhHHhhhCCCCchh---------hhhccCCCCCC
Q 002348 199 RIKCHQCMKS--ERKYVVPCG-KCRTKVYCIQCIKQWYPKMSEL---------DVAEICPFCRR 250 (933)
Q Consensus 199 ~~~CHQCrqk--t~~~~v~C~-~C~r~~FC~~CL~~rY~e~~~e---------dv~~~CP~CRg 250 (933)
...|..|++. +.+..+.|- .|. .-|=..|+. ++.+ +..|.||.|+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~-~WfH~~CVg-----lt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQ-KWFHRECTG-----MTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTC-CEEEGGGTT-----CCHHHHHHHHHCTTEEECCHHHHH
T ss_pred cCCCCCCCCccCCCCCEEEecCCcc-cccccccCC-----cCHHHHHhhccCCCCCEECccccC
Confidence 4568899988 556788997 787 556666653 4442 24699999875
No 259
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=21.21 E-value=68 Score=28.13 Aligned_cols=35 Identities=26% Similarity=0.775 Sum_probs=28.1
Q ss_pred CCCCcccccCccccccccc---cccCcCCcccchhchHH
Q 002348 324 GNDERVYCNHCATSIIDLH---RSCPKCSYELCLTCCKE 359 (933)
Q Consensus 324 ~~DERvyCDnCkTSI~D~H---RSC~~CsYDLCL~CC~E 359 (933)
..++...|..|.++ |.+- -+|..|+.-+|-.|+..
T Consensus 17 pd~~~~~C~~C~~~-Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 17 EDEDAPACNGCGCV-FTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CTTTCCBCTTTCCB-CCTTSCCEECTTTCCEECTGGGCC
T ss_pred cCCCCCCCcCcCCc-cccchhcccccCCCcEEChHHhCC
Confidence 45567789999988 4444 58999999999999864
No 260
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=20.24 E-value=25 Score=25.51 Aligned_cols=9 Identities=44% Similarity=1.206 Sum_probs=5.4
Q ss_pred CcccccCcc
Q 002348 327 ERVYCNHCA 335 (933)
Q Consensus 327 ERvyCDnCk 335 (933)
+|.||++|-
T Consensus 2 ~RpYCe~CE 10 (26)
T 2hqh_E 2 SRPYCEICE 10 (26)
T ss_dssp --CEETTTT
T ss_pred CCccchHHH
Confidence 678888874
Done!