Query 002349
Match_columns 933
No_of_seqs 918 out of 6447
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 22:41:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.1E-69 3.6E-74 667.6 33.1 501 18-525 5-754 (768)
2 4eco_A Uncharacterized protein 100.0 3.7E-58 1.3E-62 552.1 23.4 451 24-487 29-578 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 6.4E-57 2.2E-61 549.1 28.4 475 22-515 266-871 (876)
4 3t6q_A CD180 antigen; protein- 100.0 6.7E-54 2.3E-58 515.2 29.8 456 58-515 14-565 (606)
5 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-53 5.6E-58 529.1 32.2 454 56-515 14-565 (844)
6 3rgz_A Protein brassinosteroid 100.0 5.9E-54 2E-58 527.6 22.8 420 69-489 224-741 (768)
7 3vq2_A TLR4, TOLL-like recepto 100.0 8.9E-53 3.1E-57 505.4 28.7 443 68-515 32-563 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 4.8E-52 1.6E-56 506.0 31.7 460 56-515 4-627 (680)
9 4aoj_A High affinity nerve gro 100.0 8.6E-52 3E-56 450.9 22.5 259 598-871 41-319 (329)
10 4asz_A BDNF/NT-3 growth factor 100.0 6.4E-52 2.2E-56 445.6 19.7 258 598-870 13-288 (299)
11 3omv_A RAF proto-oncogene seri 100.0 2.9E-51 9.8E-56 440.3 22.4 258 598-870 36-299 (307)
12 4gt4_A Tyrosine-protein kinase 100.0 3.7E-51 1.3E-55 441.6 21.9 257 599-870 27-305 (308)
13 3t6q_A CD180 antigen; protein- 100.0 9.7E-50 3.3E-54 479.0 30.6 423 69-493 58-565 (606)
14 4fih_A Serine/threonine-protei 100.0 8.7E-51 3E-55 441.7 19.2 250 598-865 74-324 (346)
15 4b9d_A Serine/threonine-protei 100.0 7.5E-51 2.6E-55 442.9 17.8 251 598-865 24-277 (350)
16 2z63_A TOLL-like receptor 4, v 100.0 8.3E-50 2.8E-54 476.2 26.5 440 68-515 28-536 (570)
17 4g3f_A NF-kappa-beta-inducing 100.0 1.7E-50 5.8E-55 438.3 17.8 252 598-870 58-315 (336)
18 4aw0_A HPDK1, 3-phosphoinositi 100.0 2.1E-50 7.2E-55 432.1 18.1 247 598-863 32-283 (311)
19 3fpq_A Serine/threonine-protei 100.0 8.9E-50 3E-54 425.6 20.5 247 601-865 29-283 (290)
20 3hyh_A Carbon catabolite-derep 100.0 2E-49 6.9E-54 418.9 21.4 246 598-865 13-263 (275)
21 4fie_A Serine/threonine-protei 100.0 1.3E-49 4.3E-54 443.2 20.3 250 598-865 151-401 (423)
22 3hmm_A TGF-beta receptor type- 100.0 1.5E-49 5.2E-54 430.5 16.5 268 598-871 3-297 (303)
23 4ase_A Vascular endothelial gr 100.0 1.7E-49 5.9E-54 436.2 15.7 268 590-871 56-347 (353)
24 3ubd_A Ribosomal protein S6 ki 100.0 1.9E-49 6.6E-54 424.9 14.9 248 598-865 24-282 (304)
25 2z81_A CD282 antigen, TOLL-lik 100.0 4.3E-49 1.5E-53 467.6 17.6 447 55-514 3-514 (549)
26 3vq2_A TLR4, TOLL-like recepto 100.0 3.8E-48 1.3E-52 465.2 25.1 418 68-493 56-563 (606)
27 1ziw_A TOLL-like receptor 3; i 100.0 2.4E-47 8.3E-52 464.5 31.0 303 190-492 250-626 (680)
28 4ecn_A Leucine-rich repeat pro 100.0 3.8E-48 1.3E-52 471.9 22.7 409 92-511 323-841 (876)
29 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-47 4.5E-52 476.1 26.9 419 69-492 49-564 (844)
30 4g31_A Eukaryotic translation 100.0 2.3E-47 7.7E-52 411.1 20.1 252 597-865 4-280 (299)
31 2z7x_B TOLL-like receptor 1, v 100.0 6.8E-48 2.3E-52 454.0 17.3 426 73-515 5-486 (520)
32 4eco_A Uncharacterized protein 100.0 2.2E-48 7.4E-53 467.2 10.8 433 69-514 106-630 (636)
33 2z63_A TOLL-like receptor 4, v 100.0 8.4E-47 2.9E-51 450.2 24.0 417 69-494 53-537 (570)
34 4g8a_A TOLL-like receptor 4; l 100.0 2.6E-45 8.9E-50 443.2 27.7 471 39-515 8-585 (635)
35 4b99_A Mitogen-activated prote 100.0 1.5E-45 5.2E-50 412.1 22.1 262 598-866 54-346 (398)
36 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-46 8.4E-51 440.7 15.8 412 68-492 21-485 (520)
37 4f9c_A Cell division cycle 7-r 100.0 9.8E-45 3.3E-49 401.4 21.7 263 592-865 15-353 (361)
38 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1E-44 3.4E-49 430.6 23.4 428 71-515 34-515 (562)
39 3uto_A Twitchin; kinase, muscl 100.0 5.4E-44 1.8E-48 419.7 24.5 253 597-865 156-411 (573)
40 2z81_A CD282 antigen, TOLL-lik 100.0 6.1E-45 2.1E-49 431.9 16.0 415 68-494 50-516 (549)
41 3v47_A TOLL-like receptor 5B a 100.0 3.9E-44 1.3E-48 414.7 22.0 391 53-494 5-414 (455)
42 1ogq_A PGIP-2, polygalacturona 100.0 6.2E-44 2.1E-48 390.4 18.9 293 21-342 2-302 (313)
43 3v5w_A G-protein coupled recep 100.0 1.9E-43 6.3E-48 410.4 19.0 248 598-865 189-450 (689)
44 3uim_A Brassinosteroid insensi 100.0 1.1E-42 3.9E-47 383.6 24.3 285 585-870 17-310 (326)
45 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-43 6.2E-48 419.8 18.9 410 68-493 52-515 (562)
46 2qkw_B Protein kinase; three-h 100.0 1.5E-42 5.1E-47 381.7 19.6 277 591-871 32-315 (321)
47 3v47_A TOLL-like receptor 5B a 100.0 1E-42 3.5E-47 402.7 17.3 380 54-468 15-412 (455)
48 3p86_A Serine/threonine-protei 100.0 3.5E-42 1.2E-46 375.9 19.8 265 596-876 35-303 (309)
49 3fxz_A Serine/threonine-protei 100.0 1.3E-41 4.4E-46 369.4 22.0 252 597-866 19-271 (297)
50 3zgw_A Maternal embryonic leuc 100.0 1.2E-41 4.1E-46 376.3 21.7 252 596-866 8-262 (347)
51 1jl5_A Outer protein YOPM; leu 100.0 1.6E-41 5.5E-46 389.7 22.5 371 68-489 11-410 (454)
52 3fe3_A MAP/microtubule affinit 100.0 3.6E-41 1.2E-45 370.4 23.7 249 597-866 14-266 (328)
53 2c30_A Serine/threonine-protei 100.0 6.5E-41 2.2E-45 368.1 25.0 263 586-866 23-296 (321)
54 3kul_A Ephrin type-A receptor 100.0 2.5E-41 8.7E-46 372.0 20.6 260 598-874 49-316 (325)
55 3sxs_A Cytoplasmic tyrosine-pr 100.0 6E-41 2E-45 358.8 22.8 258 597-872 7-265 (268)
56 3s95_A LIMK-1, LIM domain kina 100.0 2.5E-41 8.6E-46 370.0 20.2 259 598-871 10-282 (310)
57 4hcu_A Tyrosine-protein kinase 100.0 5.1E-41 1.7E-45 359.6 21.6 255 598-870 10-265 (269)
58 2yab_A Death-associated protei 100.0 1.1E-40 3.9E-45 370.8 24.6 252 597-865 11-273 (361)
59 4eqm_A Protein kinase; transfe 100.0 1E-40 3.6E-45 361.8 23.6 262 598-873 11-277 (294)
60 2nru_A Interleukin-1 receptor- 100.0 1.4E-40 4.9E-45 363.4 24.7 280 584-870 11-305 (307)
61 3soc_A Activin receptor type-2 100.0 2E-41 6.8E-46 372.6 15.8 268 597-870 23-317 (322)
62 1tki_A Titin; serine kinase, m 100.0 1.8E-40 6.1E-45 364.3 22.9 253 597-866 4-259 (321)
63 1o6l_A RAC-beta serine/threoni 100.0 2.2E-40 7.7E-45 365.1 23.5 250 597-866 4-262 (337)
64 2psq_A Fibroblast growth facto 100.0 1.2E-40 3.9E-45 373.3 21.5 259 597-870 80-363 (370)
65 3tki_A Serine/threonine-protei 100.0 1.1E-40 3.9E-45 366.3 20.9 255 597-867 6-264 (323)
66 2y0a_A Death-associated protei 100.0 3E-40 1E-44 363.6 23.9 253 597-866 10-273 (326)
67 2qol_A Ephrin receptor; recept 100.0 8.1E-41 2.8E-45 374.7 18.4 258 598-872 45-310 (373)
68 2bdw_A Hypothetical protein K1 100.0 3.4E-40 1.2E-44 368.1 23.1 253 596-865 27-285 (362)
69 3gen_A Tyrosine-protein kinase 100.0 2.2E-40 7.6E-45 357.4 20.9 256 597-870 23-279 (283)
70 3soa_A Calcium/calmodulin-depe 100.0 3.8E-40 1.3E-44 376.2 23.9 255 595-865 8-268 (444)
71 3niz_A Rhodanese family protei 100.0 2.8E-40 9.6E-45 361.4 21.8 262 597-865 20-301 (311)
72 1kob_A Twitchin; kinase, intra 100.0 6.2E-40 2.1E-44 368.2 24.9 254 597-866 50-306 (387)
73 1qcf_A Haematopoetic cell kina 100.0 1.4E-40 4.8E-45 383.2 20.0 261 597-875 187-448 (454)
74 3v8s_A RHO-associated protein 100.0 1.1E-40 3.7E-45 376.4 18.3 261 591-867 62-332 (410)
75 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 2.1E-40 7.2E-45 381.3 20.4 265 597-879 183-448 (452)
76 1ob3_A PFPK5, cell division co 100.0 3.4E-40 1.2E-44 356.9 20.7 261 598-865 2-281 (288)
77 4g8a_A TOLL-like receptor 4; l 100.0 6.8E-40 2.3E-44 395.8 25.3 417 69-492 77-584 (635)
78 3txo_A PKC-L, NPKC-ETA, protei 100.0 2.1E-40 7.2E-45 367.7 18.1 250 596-865 21-281 (353)
79 3lb7_A RAF proto-oncogene seri 100.0 7E-40 2.4E-44 357.4 21.6 260 598-872 36-301 (307)
80 3cbl_A C-FES, proto-oncogene t 100.0 2.1E-40 7.1E-45 372.5 17.9 257 597-870 113-373 (377)
81 4fvq_A Tyrosine-protein kinase 100.0 4E-40 1.4E-44 356.6 18.6 254 598-874 8-278 (289)
82 3ork_A Serine/threonine protei 100.0 2E-40 6.7E-45 362.9 16.3 257 597-868 11-278 (311)
83 3dtc_A Mitogen-activated prote 100.0 9.2E-40 3.2E-44 350.2 20.9 253 598-869 7-271 (271)
84 1mp8_A Focal adhesion kinase 1 100.0 5.3E-40 1.8E-44 354.1 19.0 256 597-870 14-275 (281)
85 3t9t_A Tyrosine-protein kinase 100.0 8.8E-40 3E-44 349.5 20.3 255 598-870 8-263 (267)
86 3q4u_A Activin receptor type-1 100.0 7.8E-40 2.7E-44 356.5 20.2 257 597-869 7-300 (301)
87 4euu_A Serine/threonine-protei 100.0 2.5E-39 8.7E-44 355.5 24.4 266 598-869 9-307 (319)
88 2eva_A TAK1 kinase - TAB1 chim 100.0 1E-39 3.5E-44 356.4 21.1 257 598-873 8-265 (307)
89 1fot_A TPK1 delta, CAMP-depend 100.0 1.4E-39 4.7E-44 356.2 22.1 246 597-865 5-259 (318)
90 4aw2_A Serine/threonine-protei 100.0 4.4E-40 1.5E-44 374.2 18.5 264 590-866 66-340 (437)
91 3poz_A Epidermal growth factor 100.0 6.4E-40 2.2E-44 361.4 19.3 256 598-871 15-278 (327)
92 3ugc_A Tyrosine-protein kinase 100.0 6.4E-40 2.2E-44 356.1 19.0 263 598-870 10-290 (295)
93 3vhe_A Vascular endothelial gr 100.0 3.4E-40 1.2E-44 369.0 17.4 269 588-870 12-354 (359)
94 1luf_A Muscle-specific tyrosin 100.0 1.6E-39 5.4E-44 361.2 22.6 263 596-873 45-337 (343)
95 2x4f_A Myosin light chain kina 100.0 9.8E-40 3.4E-44 365.7 20.5 250 600-865 91-343 (373)
96 4f0f_A Serine/threonine-protei 100.0 3.6E-39 1.2E-43 348.7 24.3 252 598-869 19-287 (287)
97 1xjd_A Protein kinase C, theta 100.0 5.3E-40 1.8E-44 363.0 17.9 250 595-864 14-269 (345)
98 1opk_A P150, C-ABL, proto-onco 100.0 8.4E-40 2.9E-44 380.3 20.4 258 597-871 219-478 (495)
99 3l9p_A Anaplastic lymphoma kin 100.0 1.9E-40 6.6E-45 371.2 14.4 261 597-872 70-346 (367)
100 2zv2_A Calcium/calmodulin-depe 100.0 1.5E-39 5.1E-44 353.7 20.9 250 597-865 12-293 (298)
101 3h4j_B AMPK kdaid, SNF1-like p 100.0 3.4E-40 1.1E-44 363.2 15.7 247 598-866 9-260 (336)
102 1qpc_A LCK kinase; alpha beta 100.0 1.4E-39 4.6E-44 350.5 20.1 260 597-874 12-272 (279)
103 3qd2_B Eukaryotic translation 100.0 9.8E-40 3.3E-44 361.0 19.5 253 596-865 4-326 (332)
104 1rdq_E PKA C-alpha, CAMP-depen 100.0 2E-39 6.8E-44 359.7 21.9 246 598-866 41-295 (350)
105 2w4o_A Calcium/calmodulin-depe 100.0 2E-39 6.9E-44 360.3 21.8 252 596-865 51-306 (349)
106 3qup_A Tyrosine-protein kinase 100.0 6.9E-40 2.4E-44 360.8 17.6 262 597-873 22-300 (323)
107 3tt0_A Basic fibroblast growth 100.0 2.1E-39 7.3E-44 365.1 21.9 261 597-872 68-353 (382)
108 3f3z_A Calcium/calmodulin-depe 100.0 2.6E-39 9E-44 347.8 21.6 251 596-864 7-261 (277)
109 3bz5_A Internalin-J, INLJ; leu 100.0 2.4E-39 8.2E-44 372.0 22.6 350 69-493 43-392 (457)
110 1rjb_A FL cytokine receptor; k 100.0 1.7E-39 5.8E-44 361.0 20.6 264 596-873 43-336 (344)
111 4fr4_A YANK1, serine/threonine 100.0 1.4E-39 4.8E-44 363.9 19.9 249 598-864 15-271 (384)
112 2izr_A Casein kinase I isoform 100.0 1E-39 3.5E-44 360.5 18.5 257 598-869 9-279 (330)
113 3a62_A Ribosomal protein S6 ki 100.0 2E-39 6.7E-44 357.3 20.7 250 597-866 16-278 (327)
114 3kex_A Receptor tyrosine-prote 100.0 7E-40 2.4E-44 360.9 17.0 257 598-872 13-277 (325)
115 2ivs_A Proto-oncogene tyrosine 100.0 1.5E-39 5.1E-44 356.6 19.5 259 597-870 22-310 (314)
116 3o0g_A Cell division protein k 100.0 2.1E-39 7.2E-44 351.4 20.4 261 598-865 2-283 (292)
117 2i0e_A Protein kinase C-beta I 100.0 2.3E-39 7.8E-44 359.2 21.1 250 596-865 18-277 (353)
118 2a2a_A Death-associated protei 100.0 3.9E-39 1.3E-43 354.4 22.7 253 596-865 10-273 (321)
119 2pmi_A Negative RE, cyclin-dep 100.0 2.6E-39 9E-44 354.9 21.1 264 597-865 4-294 (317)
120 3c0i_A Peripheral plasma membr 100.0 1.9E-39 6.5E-44 361.0 20.2 255 597-865 23-287 (351)
121 3og7_A AKAP9-BRAF fusion prote 100.0 2.6E-39 8.8E-44 350.2 20.7 260 597-871 23-288 (289)
122 2y94_A 5'-AMP-activated protei 100.0 4.5E-39 1.5E-43 369.6 23.5 247 598-865 16-267 (476)
123 4dc2_A Protein kinase C IOTA t 100.0 3.5E-39 1.2E-43 361.9 22.0 251 597-865 51-319 (396)
124 3kfa_A Tyrosine-protein kinase 100.0 2E-39 6.7E-44 350.9 19.0 258 596-870 11-270 (288)
125 1csn_A Casein kinase-1; phosph 100.0 2.2E-39 7.4E-44 352.5 19.3 260 598-871 10-283 (298)
126 3hko_A Calcium/calmodulin-depe 100.0 3.6E-39 1.2E-43 358.6 21.4 261 593-865 21-331 (345)
127 3kmu_A ILK, integrin-linked ki 100.0 4.5E-39 1.6E-43 344.6 21.4 251 598-870 10-269 (271)
128 2h34_A Serine/threonine-protei 100.0 4.3E-39 1.5E-43 351.9 21.6 263 596-874 32-299 (309)
129 3a8x_A Protein kinase C IOTA t 100.0 4.6E-39 1.6E-43 356.2 22.0 250 598-865 9-276 (345)
130 3kk8_A Calcium/calmodulin depe 100.0 5.4E-39 1.8E-43 346.8 22.0 252 597-865 5-262 (284)
131 2h8h_A Proto-oncogene tyrosine 100.0 1.1E-39 3.7E-44 382.9 17.6 264 597-878 266-530 (535)
132 2eue_A Carbon catabolite derep 100.0 4.5E-39 1.5E-43 345.7 20.7 246 598-865 13-263 (275)
133 2vd5_A DMPK protein; serine/th 100.0 1.1E-39 3.8E-44 368.3 16.7 263 590-866 53-329 (412)
134 3lxl_A Tyrosine-protein kinase 100.0 6.4E-40 2.2E-44 361.7 14.3 266 598-873 23-305 (327)
135 3uc3_A Serine/threonine-protei 100.0 2.1E-39 7.1E-44 361.8 18.5 254 597-866 19-276 (361)
136 3fdn_A Serine/threonine-protei 100.0 4.9E-39 1.7E-43 346.2 20.5 248 597-866 8-259 (279)
137 3ttj_A Mitogen-activated prote 100.0 3.4E-39 1.2E-43 371.5 20.6 259 597-866 61-357 (464)
138 3cc6_A Protein tyrosine kinase 100.0 5.2E-39 1.8E-43 346.3 20.7 255 597-869 11-271 (281)
139 1k9a_A Carboxyl-terminal SRC k 100.0 4.5E-39 1.5E-43 370.0 21.5 251 597-870 192-444 (450)
140 1o6v_A Internalin A; bacterial 100.0 9.2E-39 3.1E-43 370.1 24.1 347 91-491 45-391 (466)
141 1t46_A HOMO sapiens V-KIT hard 100.0 3.7E-39 1.3E-43 353.3 19.5 260 597-870 22-306 (313)
142 2v62_A Serine/threonine-protei 100.0 1.9E-39 6.7E-44 360.4 17.2 265 598-871 37-328 (345)
143 3oz6_A Mitogen-activated prote 100.0 2.6E-39 8.9E-44 365.5 18.5 263 595-865 6-329 (388)
144 3p1a_A MYT1 kinase, membrane-a 100.0 3.6E-39 1.2E-43 352.7 18.9 246 597-865 56-305 (311)
145 1o6v_A Internalin A; bacterial 100.0 9.7E-39 3.3E-43 369.9 23.6 346 113-511 43-389 (466)
146 3mtl_A Cell division protein k 100.0 2.5E-39 8.7E-44 356.1 17.7 262 598-866 2-283 (324)
147 3gni_B Strad alpha; kinase fol 100.0 6.5E-39 2.2E-43 362.5 21.4 265 597-865 24-334 (389)
148 1jl5_A Outer protein YOPM; leu 100.0 1.2E-38 4.2E-43 365.8 24.0 354 85-489 4-371 (454)
149 4agu_A Cyclin-dependent kinase 100.0 6.8E-39 2.3E-43 350.9 20.6 262 597-865 2-285 (311)
150 2pvf_A Fibroblast growth facto 100.0 7.1E-39 2.4E-43 354.3 21.0 260 597-871 34-318 (334)
151 1ua2_A CAK, cell division prot 100.0 9.2E-39 3.2E-43 355.1 22.0 267 594-867 6-294 (346)
152 3cok_A Serine/threonine-protei 100.0 7E-39 2.4E-43 344.7 20.2 250 597-865 10-263 (278)
153 4ejn_A RAC-alpha serine/threon 100.0 2.9E-39 1E-43 371.8 18.3 250 597-866 147-406 (446)
154 1p4o_A Insulin-like growth fac 100.0 1.8E-39 6E-44 357.4 15.7 265 592-871 19-299 (322)
155 1mqb_A Ephrin type-A receptor 100.0 4.8E-39 1.6E-43 355.3 19.1 258 598-872 44-310 (333)
156 3g33_A Cell division protein k 100.0 6.4E-39 2.2E-43 350.5 19.8 263 596-865 7-297 (308)
157 3bhy_A Death-associated protei 100.0 1.2E-38 4E-43 343.9 21.6 251 597-864 4-265 (283)
158 3op5_A Serine/threonine-protei 100.0 1.6E-39 5.4E-44 363.9 15.1 265 597-871 34-329 (364)
159 2yex_A Serine/threonine-protei 100.0 1.4E-38 4.8E-43 341.9 21.8 254 596-865 5-262 (276)
160 3lzb_A Epidermal growth factor 100.0 5.4E-39 1.8E-43 353.8 18.7 257 598-872 15-279 (327)
161 1u59_A Tyrosine-protein kinase 100.0 1.1E-38 3.8E-43 344.8 20.9 256 598-871 9-272 (287)
162 4e5w_A Tyrosine-protein kinase 100.0 1.7E-39 5.7E-44 354.1 14.4 262 598-869 21-300 (302)
163 2buj_A Serine/threonine-protei 100.0 3.6E-39 1.2E-43 354.0 17.1 265 597-874 28-309 (317)
164 2r5t_A Serine/threonine-protei 100.0 5.8E-39 2E-43 358.4 19.0 245 597-861 37-286 (373)
165 2jam_A Calcium/calmodulin-depe 100.0 1.1E-38 3.8E-43 347.9 20.5 252 596-865 7-262 (304)
166 2y7j_A Phosphorylase B kinase 100.0 1.7E-38 5.8E-43 355.2 22.4 260 589-865 85-360 (365)
167 3is5_A Calcium-dependent prote 100.0 1.1E-38 3.7E-43 344.5 20.0 253 597-865 21-279 (285)
168 3dbq_A Dual specificity protei 100.0 4.2E-39 1.4E-43 357.4 17.2 252 598-867 9-276 (343)
169 3f66_A Hepatocyte growth facto 100.0 2.2E-38 7.6E-43 344.5 22.3 257 598-871 25-291 (298)
170 3lm5_A Serine/threonine-protei 100.0 3.1E-38 1.1E-42 347.9 23.7 260 592-866 22-289 (327)
171 3c1x_A Hepatocyte growth facto 100.0 1.1E-38 3.7E-43 357.0 20.2 256 599-871 90-355 (373)
172 3gbz_A Kinase, CMGC CDK; ssgci 100.0 6.1E-39 2.1E-43 353.9 17.8 264 595-866 31-320 (329)
173 3bz5_A Internalin-J, INLJ; leu 100.0 4E-38 1.4E-42 361.8 25.0 333 68-473 64-396 (457)
174 1u5q_A Serine/threonine protei 100.0 9.7E-39 3.3E-43 354.3 19.2 249 597-867 53-308 (348)
175 2acx_A G protein-coupled recep 100.0 9.2E-39 3.2E-43 371.5 19.9 252 597-865 183-445 (576)
176 3kn6_A Ribosomal protein S6 ki 100.0 5.6E-39 1.9E-43 353.2 17.2 247 603-866 16-272 (325)
177 3mdy_A Bone morphogenetic prot 100.0 1.2E-38 4.2E-43 353.0 20.0 270 591-872 30-332 (337)
178 2xir_A Vascular endothelial gr 100.0 8.5E-39 2.9E-43 350.9 18.5 268 589-870 18-309 (316)
179 2rku_A Serine/threonine-protei 100.0 2.4E-38 8.2E-43 343.5 21.6 248 598-865 15-266 (294)
180 2wqm_A Serine/threonine-protei 100.0 1.3E-38 4.4E-43 348.5 19.4 264 597-873 31-299 (310)
181 2zmd_A Dual specificity protei 100.0 1E-38 3.5E-43 359.9 19.0 251 598-866 56-322 (390)
182 3pls_A Macrophage-stimulating 100.0 1.6E-38 5.6E-43 345.5 19.9 258 599-872 22-288 (298)
183 1nxk_A MAP kinase-activated pr 100.0 2.6E-38 9E-43 357.6 22.3 250 598-867 61-324 (400)
184 2vgo_A Serine/threonine-protei 100.0 3.3E-38 1.1E-42 340.5 22.1 245 598-864 14-262 (284)
185 2id5_A Lingo-1, leucine rich r 100.0 1.4E-38 4.9E-43 370.1 20.6 346 119-514 14-360 (477)
186 3lxp_A Non-receptor tyrosine-p 100.0 8.8E-39 3E-43 350.9 17.6 260 600-871 33-310 (318)
187 2qr7_A Ribosomal protein S6 ki 100.0 1.1E-38 3.8E-43 352.8 18.5 251 596-865 20-278 (342)
188 3gxj_A TGF-beta receptor type- 100.0 2.2E-40 7.6E-45 361.1 4.8 261 597-873 2-299 (303)
189 4eut_A Serine/threonine-protei 100.0 8E-39 2.7E-43 362.1 17.7 268 598-871 9-309 (396)
190 2owb_A Serine/threonine-protei 100.0 1.9E-38 6.5E-43 350.9 20.2 249 597-865 40-292 (335)
191 3llt_A Serine/threonine kinase 100.0 1.4E-38 4.9E-43 355.9 19.3 265 591-865 28-356 (360)
192 3dls_A PAS domain-containing s 100.0 8.3E-39 2.8E-43 353.2 17.1 244 596-866 22-276 (335)
193 3mwu_A Calmodulin-domain prote 100.0 2.7E-38 9.1E-43 367.9 22.2 252 596-865 20-277 (486)
194 2clq_A Mitogen-activated prote 100.0 2.7E-38 9.4E-43 343.2 20.7 253 599-865 23-279 (295)
195 3mi9_A Cell division protein k 100.0 2.5E-38 8.6E-43 352.6 20.7 265 597-867 16-314 (351)
196 3lij_A Calcium/calmodulin depe 100.0 3.5E-38 1.2E-42 367.5 22.8 252 596-865 35-292 (494)
197 1xbb_A Tyrosine-protein kinase 100.0 9.6E-39 3.3E-43 346.1 16.6 255 597-870 15-278 (291)
198 2ac3_A MAP kinase-interacting 100.0 1.7E-38 5.9E-43 348.5 18.9 256 598-866 12-297 (316)
199 3nyv_A Calmodulin-domain prote 100.0 2E-38 6.8E-43 369.1 20.3 251 597-865 25-282 (484)
200 4aaa_A Cyclin-dependent kinase 100.0 1.1E-38 3.7E-43 352.4 17.0 262 597-865 24-307 (331)
201 2h6d_A 5'-AMP-activated protei 100.0 3.6E-38 1.2E-42 338.7 20.6 247 598-865 11-262 (276)
202 1t4h_A Serine/threonine-protei 100.0 3.9E-38 1.3E-42 341.1 20.8 247 599-865 27-283 (290)
203 2a19_B Interferon-induced, dou 100.0 1.1E-38 3.9E-43 344.1 16.5 252 596-874 9-277 (284)
204 2i1m_A Macrophage colony-stimu 100.0 7.6E-39 2.6E-43 354.1 15.5 259 597-869 45-324 (333)
205 4hgt_A Casein kinase I isoform 100.0 1.1E-38 3.7E-43 346.6 16.4 263 595-871 6-280 (296)
206 2ozo_A Tyrosine-protein kinase 100.0 2.8E-38 9.5E-43 376.1 21.3 248 605-870 343-597 (613)
207 3brb_A Proto-oncogene tyrosine 100.0 3.5E-38 1.2E-42 345.5 20.4 260 596-870 32-307 (313)
208 1cm8_A Phosphorylated MAP kina 100.0 2.4E-38 8.2E-43 354.0 19.4 255 597-865 24-308 (367)
209 1vzo_A Ribosomal protein S6 ki 100.0 5.5E-39 1.9E-43 357.8 14.1 254 597-868 53-325 (355)
210 1b6c_B TGF-B superfamily recep 100.0 3.4E-38 1.2E-42 350.2 20.3 265 591-871 35-336 (342)
211 3i6u_A CDS1, serine/threonine- 100.0 3.2E-38 1.1E-42 359.5 20.3 255 595-866 132-401 (419)
212 2xrw_A Mitogen-activated prote 100.0 4.8E-38 1.7E-42 352.6 21.4 259 597-866 24-320 (371)
213 3g2f_A Bone morphogenetic prot 100.0 9.7E-39 3.3E-43 353.7 15.4 270 597-874 12-321 (336)
214 2wtk_C Serine/threonine-protei 100.0 2E-37 6.7E-42 338.2 25.5 252 596-865 3-264 (305)
215 3uzp_A CKI-delta, CKID, casein 100.0 2E-38 6.9E-43 344.5 17.4 259 597-871 8-280 (296)
216 2j7t_A Serine/threonine-protei 100.0 2E-38 7E-43 345.5 17.4 253 597-865 18-276 (302)
217 3eqc_A Dual specificity mitoge 100.0 1.9E-38 6.7E-43 354.8 17.5 260 598-865 33-325 (360)
218 3a7i_A MST3 kinase, serine/thr 100.0 1.5E-37 5.1E-42 338.8 23.9 249 598-866 22-272 (303)
219 2r3i_A Cell division protein k 100.0 5.1E-38 1.7E-42 341.8 19.8 262 598-865 3-284 (299)
220 3q5i_A Protein kinase; CDPK, m 100.0 7.5E-38 2.6E-42 365.7 22.4 252 596-865 34-302 (504)
221 2w5a_A Serine/threonine-protei 100.0 1.3E-38 4.4E-43 342.9 14.5 257 597-869 5-272 (279)
222 3pg1_A Mitogen-activated prote 100.0 3.9E-38 1.3E-42 352.7 19.1 270 588-865 12-317 (362)
223 3rp9_A Mitogen-activated prote 100.0 9E-38 3.1E-42 360.9 22.6 261 597-866 52-398 (458)
224 3n9x_A Phosphotransferase; mal 100.0 1.8E-37 6.3E-42 354.9 24.9 198 597-801 25-252 (432)
225 3c4z_A Rhodopsin kinase; Ser/T 100.0 4.8E-38 1.7E-42 364.9 20.3 251 598-864 185-448 (543)
226 2w1i_A JAK2; chromosomal rearr 100.0 2.8E-38 9.6E-43 348.3 17.4 263 597-869 40-320 (326)
227 2id5_A Lingo-1, leucine rich r 100.0 1E-37 3.4E-42 363.0 22.7 320 95-440 14-333 (477)
228 2jii_A Serine/threonine-protei 100.0 1.4E-38 4.8E-43 354.6 14.6 260 598-871 42-336 (352)
229 3ll6_A Cyclin G-associated kin 100.0 2.1E-38 7E-43 351.2 15.8 255 598-871 28-308 (337)
230 1fvr_A Tyrosine-protein kinase 100.0 4.8E-38 1.6E-42 346.7 18.5 258 598-872 25-301 (327)
231 1byg_A CSK, protein (C-termina 100.0 2.3E-38 8E-43 340.6 15.6 251 597-870 20-272 (278)
232 3com_A Serine/threonine-protei 100.0 9.7E-38 3.3E-42 342.2 20.7 252 596-865 27-279 (314)
233 1u46_A ACK-1, activated CDC42 100.0 2.5E-38 8.6E-43 342.8 15.8 257 598-871 18-284 (291)
234 2yfx_A Tyrosine-protein kinase 100.0 9.9E-38 3.4E-42 344.1 20.8 261 597-872 29-305 (327)
235 4e7w_A Glycogen synthase kinas 100.0 5.5E-38 1.9E-42 354.6 18.9 258 598-865 40-322 (394)
236 2pml_X PFPK7, Ser/Thr protein 100.0 6.4E-38 2.2E-42 348.9 19.1 261 597-865 30-323 (348)
237 1phk_A Phosphorylase kinase; g 100.0 1.3E-37 4.6E-42 338.3 21.2 253 596-865 15-284 (298)
238 3byv_A Rhoptry kinase; malaria 100.0 6.8E-39 2.3E-43 360.5 11.0 242 597-864 72-359 (377)
239 4fl3_A Tyrosine-protein kinase 100.0 5.5E-38 1.9E-42 374.4 19.3 247 604-869 375-629 (635)
240 3e7e_A HBUB1, BUB1A, mitotic c 100.0 1E-37 3.5E-42 349.5 20.3 251 597-870 64-338 (365)
241 1x8b_A WEE1HU, WEE1-like prote 100.0 1.3E-37 4.3E-42 336.7 20.2 247 596-865 9-280 (289)
242 2fst_X Mitogen-activated prote 100.0 4.6E-38 1.6E-42 351.3 17.2 258 597-866 28-313 (367)
243 3sv0_A Casein kinase I-like; t 100.0 8.8E-38 3E-42 359.6 19.3 259 597-869 6-276 (483)
244 3pfq_A PKC-B, PKC-beta, protei 100.0 1E-37 3.5E-42 374.7 20.6 250 596-865 339-598 (674)
245 2vwi_A Serine/threonine-protei 100.0 6.2E-38 2.1E-42 341.8 16.5 261 597-865 14-288 (303)
246 2ycf_A Serine/threonine-protei 100.0 1.8E-37 6.2E-42 341.3 20.3 253 596-865 8-275 (322)
247 3o6n_A APL1; leucine-rich repe 100.0 1.5E-37 5.3E-42 351.4 20.2 374 44-515 3-379 (390)
248 3e3p_A Protein kinase, putativ 100.0 1.3E-37 4.6E-42 348.1 19.2 270 591-865 16-315 (360)
249 3an0_A Dual specificity mitoge 100.0 2.5E-38 8.5E-43 351.0 12.7 255 596-865 49-311 (340)
250 3kvw_A DYRK2, dual specificity 100.0 1.1E-37 3.9E-42 355.8 18.3 260 597-866 96-410 (429)
251 3fme_A Dual specificity mitoge 100.0 1.3E-37 4.3E-42 337.1 17.8 254 597-865 6-267 (290)
252 3rgf_A Cyclin-dependent kinase 100.0 3.3E-37 1.1E-41 350.3 21.9 266 597-868 19-337 (405)
253 3qyz_A Mitogen-activated prote 100.0 2.3E-37 7.9E-42 346.4 20.2 260 597-866 26-315 (364)
254 2i6l_A Mitogen-activated prote 100.0 1.7E-37 5.8E-42 341.1 18.5 260 598-865 11-306 (320)
255 3eb0_A Putative uncharacterize 100.0 1.5E-37 5.2E-42 350.3 18.5 262 594-865 3-322 (383)
256 3nsz_A CK II alpha, casein kin 100.0 2E-37 6.8E-42 342.2 19.0 254 598-865 36-320 (330)
257 1z57_A Dual specificity protei 100.0 4.1E-37 1.4E-41 341.0 21.4 258 598-865 14-329 (339)
258 2j0j_A Focal adhesion kinase 1 100.0 1.9E-37 6.5E-42 371.2 20.0 256 596-869 388-649 (656)
259 2wei_A Calmodulin-domain prote 100.0 4.6E-37 1.6E-41 332.2 20.7 254 594-865 18-277 (287)
260 4exu_A Mitogen-activated prote 100.0 7.6E-37 2.6E-41 342.9 23.1 255 597-866 41-325 (371)
261 2y4i_B KSR2, HKSR2, kinase sup 100.0 5.6E-38 1.9E-42 344.9 13.2 258 597-873 32-304 (319)
262 2vx3_A Dual specificity tyrosi 100.0 6.5E-37 2.2E-41 345.0 22.2 261 597-865 53-373 (382)
263 1blx_A Cyclin-dependent kinase 100.0 3.5E-37 1.2E-41 339.6 19.6 261 596-865 9-297 (326)
264 2x7f_A TRAF2 and NCK-interacti 100.0 2.8E-37 9.5E-42 340.5 18.3 254 595-865 21-287 (326)
265 1j1b_A Glycogen synthase kinas 100.0 1.1E-37 3.7E-42 355.2 15.4 258 598-865 54-337 (420)
266 2b9h_A MAP kinase FUS3, mitoge 100.0 1.2E-36 4E-41 339.5 22.9 260 597-866 10-307 (353)
267 3oja_B Anopheles plasmodium-re 100.0 4.7E-37 1.6E-41 366.7 21.0 335 90-514 49-384 (597)
268 3q60_A ROP5B; pseudokinase, tr 100.0 1.2E-37 4E-42 349.7 14.1 252 598-864 62-352 (371)
269 1zy4_A Serine/threonine-protei 100.0 8.7E-37 3E-41 332.6 20.2 253 596-865 4-284 (303)
270 3coi_A Mitogen-activated prote 100.0 1.2E-36 4E-41 339.3 20.3 254 598-866 24-307 (353)
271 3cek_A Dual specificity protei 100.0 6.7E-37 2.3E-41 335.3 17.9 252 597-866 27-294 (313)
272 1wak_A Serine/threonine-protei 100.0 7.1E-37 2.4E-41 347.0 17.9 259 598-865 37-392 (397)
273 2eu9_A Dual specificity protei 100.0 2.3E-36 7.9E-41 337.2 21.6 258 598-865 19-334 (355)
274 3fhr_A MAP kinase-activated pr 100.0 1.2E-36 4.2E-41 336.3 18.1 254 597-866 27-289 (336)
275 2rio_A Serine/threonine-protei 100.0 1.9E-36 6.4E-41 346.5 18.9 252 599-865 16-296 (434)
276 3p23_A Serine/threonine-protei 100.0 3.1E-36 1E-40 343.6 19.0 249 598-865 24-284 (432)
277 2dyl_A Dual specificity mitoge 100.0 4.3E-36 1.5E-40 329.7 19.4 252 597-864 24-283 (318)
278 1q8y_A SR protein kinase; tran 100.0 4.9E-36 1.7E-40 337.1 19.3 260 598-866 19-335 (373)
279 3aln_A Dual specificity mitoge 100.0 3.4E-36 1.1E-40 331.9 17.0 255 598-864 22-285 (327)
280 3qa8_A MGC80376 protein; kinas 100.0 1.1E-36 3.8E-41 357.0 12.6 261 597-862 13-295 (676)
281 2iwi_A Serine/threonine-protei 100.0 1.5E-36 5.2E-41 332.3 12.8 248 592-867 25-286 (312)
282 3a99_A Proto-oncogene serine/t 100.0 4E-36 1.4E-40 330.0 13.9 242 596-865 41-294 (320)
283 3uqc_A Probable conserved tran 100.0 1.8E-35 6.3E-40 318.6 17.0 233 598-873 31-267 (286)
284 1ogq_A PGIP-2, polygalacturona 100.0 2.7E-35 9.1E-40 321.9 12.5 257 260-519 51-312 (313)
285 4fmz_A Internalin; leucine ric 100.0 3.4E-34 1.2E-38 318.6 21.7 218 256-488 129-346 (347)
286 4fcg_A Uncharacterized protein 100.0 4.7E-35 1.6E-39 321.9 14.2 279 22-343 24-313 (328)
287 2pzi_A Probable serine/threoni 100.0 7.5E-35 2.6E-39 352.4 17.3 237 598-868 80-325 (681)
288 4fmz_A Internalin; leucine ric 100.0 4.9E-34 1.7E-38 317.4 20.8 307 88-464 40-346 (347)
289 3o6n_A APL1; leucine-rich repe 100.0 2.9E-34 9.8E-39 324.6 19.2 312 139-514 44-356 (390)
290 3dzo_A Rhoptry kinase domain; 100.0 7.5E-35 2.6E-39 331.0 14.0 240 598-863 78-362 (413)
291 2vuw_A Serine/threonine-protei 100.0 3.3E-35 1.1E-39 325.1 10.5 244 597-865 19-332 (336)
292 3m2w_A MAP kinase-activated pr 100.0 3.6E-34 1.2E-38 311.3 18.3 232 598-866 17-258 (299)
293 3oja_B Anopheles plasmodium-re 100.0 4.2E-34 1.5E-38 341.1 19.0 333 43-442 8-360 (597)
294 2ft3_A Biglycan; proteoglycan, 100.0 5.7E-33 2E-37 306.6 23.0 293 141-485 34-330 (332)
295 1xku_A Decorin; proteoglycan, 100.0 1.3E-32 4.6E-37 303.4 22.4 291 73-390 36-330 (330)
296 2ft3_A Biglycan; proteoglycan, 100.0 5.6E-32 1.9E-36 298.7 26.1 287 165-507 34-330 (332)
297 1xku_A Decorin; proteoglycan, 100.0 5E-32 1.7E-36 298.8 22.1 268 165-462 53-330 (330)
298 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-36 4.3E-41 352.3 -20.8 379 92-489 3-441 (461)
299 1z7x_W Ribonuclease inhibitor; 100.0 7.6E-36 2.6E-40 345.7 -19.1 385 69-472 4-448 (461)
300 2z80_A TOLL-like receptor 2, v 100.0 1.1E-30 3.8E-35 290.9 13.0 285 52-371 26-317 (353)
301 2z66_A Variable lymphocyte rec 100.0 1.3E-30 4.5E-35 284.2 12.9 289 52-378 3-297 (306)
302 2z80_A TOLL-like receptor 2, v 100.0 1.7E-30 5.9E-35 289.3 11.8 277 216-494 35-320 (353)
303 3oja_A Leucine-rich immune mol 100.0 2.7E-32 9.1E-37 316.3 -3.1 219 257-489 32-251 (487)
304 3ogk_B Coronatine-insensitive 100.0 1.9E-33 6.5E-38 336.4 -17.6 430 54-490 40-528 (592)
305 2z66_A Variable lymphocyte rec 100.0 1.7E-29 5.9E-34 275.3 14.2 250 239-492 11-265 (306)
306 3zyj_A Leucine-rich repeat-con 100.0 8.4E-29 2.9E-33 284.2 19.2 249 237-490 45-294 (440)
307 3zyj_A Leucine-rich repeat-con 100.0 6.3E-29 2.1E-33 285.3 17.8 248 262-514 46-296 (440)
308 3zyi_A Leucine-rich repeat-con 100.0 5.3E-29 1.8E-33 287.0 17.0 231 259-491 75-306 (452)
309 3zyi_A Leucine-rich repeat-con 100.0 1.1E-28 3.7E-33 284.3 19.3 251 260-515 55-308 (452)
310 4fcg_A Uncharacterized protein 100.0 1.4E-28 4.6E-33 270.3 18.6 227 259-490 81-316 (328)
311 1wwl_A Monocyte differentiatio 100.0 9E-30 3.1E-34 278.1 6.4 247 89-368 40-309 (312)
312 3g06_A SSPH2 (leucine-rich rep 100.0 6.9E-29 2.4E-33 293.2 14.4 287 42-399 10-304 (622)
313 1ozn_A Reticulon 4 receptor; N 100.0 2.4E-28 8.3E-33 263.3 17.4 210 283-492 32-242 (285)
314 1wwl_A Monocyte differentiatio 100.0 1.3E-29 4.3E-34 277.0 6.8 251 208-489 39-310 (312)
315 1ozn_A Reticulon 4 receptor; N 100.0 2.8E-28 9.5E-33 262.9 16.7 252 239-494 15-267 (285)
316 3ogk_B Coronatine-insensitive 99.9 2.6E-31 8.8E-36 317.9 -12.4 414 69-485 74-548 (592)
317 4azs_A Methyltransferase WBDD; 99.9 7E-29 2.4E-33 291.4 7.2 184 606-800 242-437 (569)
318 3g06_A SSPH2 (leucine-rich rep 99.9 9.6E-27 3.3E-31 274.9 23.9 268 141-475 41-308 (622)
319 3o53_A Protein LRIM1, AGAP0063 99.9 5.5E-29 1.9E-33 272.6 2.5 248 162-470 32-282 (317)
320 3o53_A Protein LRIM1, AGAP0063 99.9 4.7E-29 1.6E-33 273.1 1.2 257 94-387 12-270 (317)
321 3oja_A Leucine-rich immune mol 99.9 2.7E-27 9.4E-32 274.2 7.6 234 236-483 35-270 (487)
322 2o6q_A Variable lymphocyte rec 99.9 7.3E-26 2.5E-30 241.7 18.0 169 53-225 2-170 (270)
323 2z62_A TOLL-like receptor 4, v 99.9 7.9E-26 2.7E-30 242.4 15.3 212 259-494 28-243 (276)
324 2p1m_B Transport inhibitor res 99.9 8.7E-30 3E-34 304.8 -19.1 425 55-489 34-520 (594)
325 2z62_A TOLL-like receptor 4, v 99.9 3E-25 1E-29 237.8 17.1 230 216-468 11-241 (276)
326 2o6q_A Variable lymphocyte rec 99.9 1.1E-24 3.6E-29 232.6 19.0 205 260-491 17-221 (270)
327 1p9a_G Platelet glycoprotein I 99.9 4E-25 1.4E-29 238.1 14.0 204 279-489 6-209 (290)
328 2p1m_B Transport inhibitor res 99.9 2.3E-28 7.7E-33 292.5 -15.3 414 69-486 67-542 (594)
329 3en9_A Glycoprotease, O-sialog 99.9 1.5E-25 5.2E-30 261.6 7.6 185 601-802 339-539 (540)
330 1p9a_G Platelet glycoprotein I 99.9 1.9E-24 6.6E-29 232.7 15.7 204 255-465 6-209 (290)
331 3rfs_A Internalin B, repeat mo 99.9 9.3E-25 3.2E-29 233.3 12.6 182 303-493 59-240 (272)
332 3rfs_A Internalin B, repeat mo 99.9 1.2E-24 4.2E-29 232.4 12.4 166 303-475 81-246 (272)
333 4glp_A Monocyte differentiatio 99.9 6E-24 2.1E-28 231.7 13.7 205 115-344 90-307 (310)
334 2ast_B S-phase kinase-associat 99.9 6E-26 2E-30 250.9 -3.7 268 54-352 35-314 (336)
335 2xwt_C Thyrotropin receptor; s 99.9 1.6E-23 5.6E-28 219.1 15.0 203 83-317 25-236 (239)
336 3goz_A Leucine-rich repeat-con 99.9 3.4E-25 1.2E-29 247.2 0.5 255 72-326 2-303 (362)
337 3goz_A Leucine-rich repeat-con 99.9 3.3E-25 1.1E-29 247.3 -0.3 251 96-346 2-299 (362)
338 4glp_A Monocyte differentiatio 99.9 2E-23 6.9E-28 227.5 12.4 203 258-488 90-307 (310)
339 3m19_A Variable lymphocyte rec 99.9 9.2E-23 3.2E-27 215.0 16.5 182 308-492 15-196 (251)
340 2xwt_C Thyrotropin receptor; s 99.9 2.6E-23 8.8E-28 217.6 12.1 196 284-485 32-236 (239)
341 4ay9_X Follicle-stimulating ho 99.9 5.5E-23 1.9E-27 228.0 13.5 245 54-317 7-256 (350)
342 3m19_A Variable lymphocyte rec 99.9 2E-22 6.9E-27 212.4 16.5 181 259-466 14-194 (251)
343 2o6s_A Variable lymphocyte rec 99.9 1.2E-22 4.2E-27 207.5 13.1 187 52-259 3-189 (208)
344 2ca6_A RAN GTPase-activating p 99.9 3.1E-25 1.1E-29 250.0 -7.7 242 251-492 24-320 (386)
345 2ca6_A RAN GTPase-activating p 99.9 2.4E-25 8.3E-30 250.9 -9.3 264 107-412 23-339 (386)
346 3cvr_A Invasion plasmid antige 99.9 4.1E-23 1.4E-27 240.8 7.6 155 44-225 33-193 (571)
347 1h6u_A Internalin H; cell adhe 99.9 1.9E-22 6.4E-27 219.3 12.0 197 255-491 37-233 (308)
348 2ast_B S-phase kinase-associat 99.9 4.5E-24 1.6E-28 235.7 -1.6 199 165-389 48-257 (336)
349 4ay9_X Follicle-stimulating ho 99.9 3.6E-22 1.2E-26 221.5 12.6 246 238-513 12-261 (350)
350 1zar_A RIO2 kinase; serine kin 99.9 1.7E-22 5.9E-27 216.0 9.5 150 593-774 85-252 (282)
351 1h6u_A Internalin H; cell adhe 99.9 5.2E-22 1.8E-26 215.9 13.1 211 213-440 20-230 (308)
352 3cvr_A Invasion plasmid antige 99.9 8.9E-22 3E-26 229.5 14.4 189 260-476 60-255 (571)
353 2o6s_A Variable lymphocyte rec 99.8 1.8E-20 6.1E-25 191.5 15.2 161 284-451 29-189 (208)
354 3e6j_A Variable lymphocyte rec 99.8 3.9E-20 1.3E-24 191.8 13.9 162 52-229 15-176 (229)
355 1dce_A Protein (RAB geranylger 99.8 2.1E-22 7.3E-27 236.2 -4.4 267 57-362 286-567 (567)
356 4b8c_D Glucose-repressible alc 99.8 1.9E-21 6.6E-26 235.3 3.7 269 22-321 129-405 (727)
357 2v9t_B SLIT homolog 2 protein 99.8 6.7E-20 2.3E-24 188.7 12.0 160 52-226 7-166 (220)
358 2xot_A Amphoterin-induced prot 99.8 3.9E-20 1.3E-24 205.9 10.2 158 333-490 41-204 (361)
359 2v70_A SLIT-2, SLIT homolog 2 99.8 1E-19 3.5E-24 187.3 12.1 155 72-229 15-170 (220)
360 2xot_A Amphoterin-induced prot 99.8 5.4E-20 1.9E-24 204.8 10.8 179 334-515 21-207 (361)
361 2v70_A SLIT-2, SLIT homolog 2 99.8 1E-19 3.6E-24 187.2 10.8 136 357-492 34-170 (220)
362 2v9t_B SLIT homolog 2 protein 99.8 1.3E-19 4.4E-24 186.5 11.4 153 335-490 15-167 (220)
363 1m9s_A Internalin B; cell inva 99.8 1.3E-19 4.4E-24 213.8 12.4 80 140-225 21-100 (605)
364 1m9s_A Internalin B; cell inva 99.8 1.9E-19 6.4E-24 212.4 12.4 173 137-322 40-212 (605)
365 1h6t_A Internalin B; cell adhe 99.8 7.1E-20 2.4E-24 197.2 7.8 186 240-465 29-214 (291)
366 3e6j_A Variable lymphocyte rec 99.8 7E-19 2.4E-23 182.3 14.0 156 333-492 21-176 (229)
367 1h6t_A Internalin B; cell adhe 99.8 2.3E-19 7.9E-24 193.1 10.2 191 211-416 23-213 (291)
368 1dce_A Protein (RAB geranylger 99.8 3.8E-21 1.3E-25 225.5 -5.2 217 137-386 346-567 (567)
369 1xeu_A Internalin C; cellular 99.8 2E-18 6.7E-23 182.8 12.1 171 138-322 17-187 (263)
370 1zth_A RIO1 serine protein kin 99.7 1.6E-18 5.6E-23 182.9 9.9 136 600-750 49-219 (258)
371 1xeu_A Internalin C; cellular 99.7 1.4E-18 4.7E-23 184.0 8.4 170 258-442 18-187 (263)
372 4b8c_D Glucose-repressible alc 99.7 5.2E-19 1.8E-23 214.1 4.5 142 300-445 217-359 (727)
373 4ezg_A Putative uncharacterize 99.7 6.5E-18 2.2E-22 170.7 9.4 105 115-223 43-147 (197)
374 1w8a_A SLIT protein; signaling 99.7 9.7E-18 3.3E-22 168.5 10.2 112 380-491 30-142 (192)
375 1w8a_A SLIT protein; signaling 99.7 1.2E-17 4.2E-22 167.8 10.9 180 334-519 11-192 (192)
376 4ezg_A Putative uncharacterize 99.7 7.9E-18 2.7E-22 170.1 8.0 108 352-463 85-193 (197)
377 3sb4_A Hypothetical leucine ri 99.7 4.3E-18 1.5E-22 186.9 4.0 219 257-482 99-328 (329)
378 3sb4_A Hypothetical leucine ri 99.7 1.3E-17 4.5E-22 183.1 6.1 290 82-385 13-327 (329)
379 2ell_A Acidic leucine-rich nuc 99.7 1.1E-16 3.9E-21 157.0 9.6 133 91-225 23-160 (168)
380 2o6r_A Variable lymphocyte rec 99.7 2.4E-16 8.3E-21 156.1 10.7 136 52-202 3-138 (177)
381 2wfh_A SLIT homolog 2 protein 99.6 3.9E-16 1.3E-20 156.7 11.0 129 358-490 13-141 (193)
382 2je0_A Acidic leucine-rich nuc 99.6 1.3E-16 4.5E-21 153.2 5.5 128 91-220 16-148 (149)
383 2ell_A Acidic leucine-rich nuc 99.6 2.3E-16 7.9E-21 154.8 7.3 133 356-490 25-162 (168)
384 4gyi_A RIO2 kinase; protein ki 99.6 1.4E-16 4.9E-21 173.9 5.2 137 600-750 97-265 (397)
385 2wfh_A SLIT homolog 2 protein 99.6 1.1E-15 3.6E-20 153.6 11.2 125 73-201 15-139 (193)
386 2o6r_A Variable lymphocyte rec 99.6 1.1E-15 3.7E-20 151.5 10.9 135 357-494 9-143 (177)
387 2je0_A Acidic leucine-rich nuc 99.6 3.8E-16 1.3E-20 149.9 5.3 126 356-483 18-148 (149)
388 4fdw_A Leucine rich hypothetic 99.6 1.3E-14 4.5E-19 162.6 15.7 210 250-486 171-381 (401)
389 4fdw_A Leucine rich hypothetic 99.6 2.1E-14 7E-19 161.0 15.0 221 260-491 136-361 (401)
390 1ds9_A Outer arm dynein; leuci 99.6 2.8E-17 9.5E-22 166.2 -7.9 150 69-225 19-185 (198)
391 1ds9_A Outer arm dynein; leuci 99.5 1E-16 3.5E-21 162.0 -4.8 152 330-488 17-185 (198)
392 1a9n_A U2A', U2A'; complex (nu 99.5 5E-15 1.7E-19 146.4 5.6 134 86-225 13-153 (176)
393 4fs7_A Uncharacterized protein 99.5 7.9E-14 2.7E-18 156.9 16.0 329 86-480 65-393 (394)
394 4fs7_A Uncharacterized protein 99.5 3.6E-13 1.2E-17 151.5 19.8 322 69-456 72-393 (394)
395 3g39_A Variable lymphocyte rec 99.5 3.8E-14 1.3E-18 139.0 9.8 111 381-494 11-121 (170)
396 1a9n_A U2A', U2A'; complex (nu 99.5 8.8E-15 3E-19 144.7 5.2 133 351-489 15-154 (176)
397 2r9u_A Variable lymphocyte rec 99.5 8.5E-14 2.9E-18 137.0 9.8 109 382-493 15-123 (174)
398 3g39_A Variable lymphocyte rec 99.4 3.4E-13 1.2E-17 132.2 9.4 108 357-467 11-118 (170)
399 2r9u_A Variable lymphocyte rec 99.4 4.7E-13 1.6E-17 131.6 9.1 103 72-177 16-118 (174)
400 2ifg_A High affinity nerve gro 99.3 1.7E-12 5.8E-17 143.4 8.2 110 55-178 7-117 (347)
401 2ifg_A High affinity nerve gro 99.2 6.2E-12 2.1E-16 138.8 8.0 102 360-464 13-116 (347)
402 3tm0_A Aminoglycoside 3'-phosp 99.2 1.7E-11 5.8E-16 129.6 10.0 148 592-748 8-212 (263)
403 4gt6_A Cell surface protein; l 99.2 6.1E-11 2.1E-15 133.2 15.1 330 109-487 56-390 (394)
404 3un9_A NLR family member X1; l 99.2 5.5E-14 1.9E-18 156.0 -10.4 38 283-320 72-114 (372)
405 3un9_A NLR family member X1; l 99.2 1.2E-13 4.1E-18 153.2 -8.6 164 92-274 72-254 (372)
406 4gt6_A Cell surface protein; l 99.2 1.9E-10 6.4E-15 129.2 17.2 329 86-463 57-390 (394)
407 1nd4_A Aminoglycoside 3'-phosp 99.1 1E-10 3.4E-15 123.4 5.9 137 599-749 21-214 (264)
408 4h09_A Hypothetical leucine ri 98.9 1.6E-08 5.4E-13 112.9 17.7 83 135-222 41-123 (379)
409 3rw6_A Nuclear RNA export fact 98.9 5.2E-12 1.8E-16 131.4 -11.0 161 54-218 76-257 (267)
410 4h09_A Hypothetical leucine ri 98.9 2.2E-08 7.4E-13 111.8 17.4 103 110-219 40-142 (379)
411 3dxp_A Putative acyl-COA dehyd 98.9 3.7E-09 1.3E-13 117.0 10.9 142 602-749 42-248 (359)
412 2ra8_A Uncharacterized protein 98.9 3.2E-10 1.1E-14 124.5 0.6 63 426-488 251-320 (362)
413 3sg8_A APH(2'')-ID; antibiotic 98.8 1.7E-09 5.8E-14 116.8 5.7 184 603-802 25-288 (304)
414 2ra8_A Uncharacterized protein 98.8 4.3E-10 1.5E-14 123.5 0.2 111 92-220 107-227 (362)
415 3r70_A Aminoglycoside phosphot 98.6 4E-07 1.4E-11 98.7 13.5 136 599-749 38-237 (320)
416 1io0_A Tropomodulin; LRR prote 98.5 3.2E-09 1.1E-13 105.2 -5.1 95 83-177 27-136 (185)
417 3d1u_A Putative fructosamine-3 98.5 7.2E-07 2.5E-11 94.8 12.3 77 601-681 18-97 (288)
418 3rw6_A Nuclear RNA export fact 98.5 1.6E-08 5.4E-13 105.2 -0.9 80 400-481 167-257 (267)
419 3tdw_A Gentamicin resistance p 98.4 2.5E-06 8.7E-11 91.6 13.4 136 603-749 24-224 (306)
420 1io0_A Tropomodulin; LRR prote 98.3 2.8E-08 9.6E-13 98.3 -3.5 119 107-225 27-164 (185)
421 4gkh_A Aminoglycoside 3'-phosp 98.2 5.9E-06 2E-10 87.1 10.8 135 605-749 31-223 (272)
422 3ovc_A Hygromycin-B 4-O-kinase 98.1 6.5E-06 2.2E-10 90.6 10.8 77 600-682 43-122 (362)
423 3ats_A Putative uncharacterize 98.1 6E-06 2E-10 91.0 9.2 81 603-683 25-122 (357)
424 2q83_A YTAA protein; 2635576, 97.8 2.9E-05 9.8E-10 84.9 8.2 140 604-748 38-251 (346)
425 2olc_A MTR kinase, methylthior 97.8 6.3E-05 2.1E-09 84.0 10.3 75 603-679 35-120 (397)
426 3e4g_A ATP synthase subunit S, 97.7 6.1E-06 2.1E-10 79.4 0.6 84 92-175 61-150 (176)
427 3e4g_A ATP synthase subunit S, 97.7 4E-06 1.4E-10 80.6 -0.7 85 116-223 61-150 (176)
428 3f7w_A Putative fructosamine-3 97.6 0.0001 3.5E-09 78.2 9.0 79 599-681 16-97 (288)
429 2pyw_A Uncharacterized protein 97.6 7.7E-05 2.6E-09 84.0 8.2 78 718-798 231-313 (420)
430 3jr1_A Putative fructosamine-3 97.6 0.00025 8.5E-09 75.7 11.6 140 601-745 39-232 (312)
431 1pgv_A TMD-1, tropomodulin TMD 97.2 1.4E-05 4.8E-10 78.4 -3.8 70 84-153 33-111 (197)
432 2ppq_A HSK, HK, homoserine kin 97.2 0.0025 8.6E-08 68.5 13.2 158 588-748 7-216 (322)
433 1zyl_A Hypothetical protein YI 97.2 0.0051 1.7E-07 66.3 15.3 158 588-749 11-223 (328)
434 3dxq_A Choline/ethanolamine ki 97.1 0.0013 4.5E-08 70.1 10.1 74 600-681 20-95 (301)
435 3rfe_A Platelet glycoprotein I 97.0 0.00061 2.1E-08 62.4 5.2 53 431-485 12-65 (130)
436 3csv_A Aminoglycoside phosphot 96.9 0.0038 1.3E-07 67.5 11.0 141 604-749 24-217 (333)
437 1pgv_A TMD-1, tropomodulin TMD 96.8 7.6E-05 2.6E-09 73.1 -3.3 114 110-223 35-168 (197)
438 1nw1_A Choline kinase (49.2 KD 96.7 0.0028 9.7E-08 71.1 8.4 73 603-681 78-159 (429)
439 2qg7_A Ethanolamine kinase PV0 96.6 0.013 4.3E-07 66.1 12.8 73 604-681 114-188 (458)
440 3feg_A Choline/ethanolamine ki 96.5 0.0063 2.1E-07 66.7 9.7 141 604-749 56-254 (379)
441 3rfe_A Platelet glycoprotein I 96.5 0.0026 8.8E-08 58.1 5.3 57 407-465 12-69 (130)
442 2yle_A Protein spire homolog 1 96.4 0.024 8.4E-07 55.6 11.5 103 679-800 33-135 (229)
443 3i1a_A Spectinomycin phosphotr 96.2 0.013 4.4E-07 63.4 10.0 31 719-749 206-236 (339)
444 3c5i_A Choline kinase; choline 96.2 0.0063 2.1E-07 66.9 7.5 73 604-681 39-121 (369)
445 3f2s_A CK, chetk-alpha, cholin 95.5 0.039 1.3E-06 60.6 9.7 142 604-749 58-280 (401)
446 3mes_A Choline kinase; malaria 94.1 0.16 5.3E-06 56.4 10.0 141 603-749 75-291 (424)
447 4ann_A ESSB; membrane protein, 85.2 2.1 7.1E-05 42.0 7.8 123 644-802 36-158 (215)
448 3g15_A CK, chetk-alpha, cholin 83.7 2.1 7.3E-05 47.0 8.1 30 720-749 245-280 (401)
449 4ano_A ESSB; membrane protein, 77.8 5 0.00017 39.5 7.4 115 652-802 48-163 (219)
450 3cxl_A N-chimerin; SH2, RHO-GA 75.0 0.38 1.3E-05 54.1 -1.6 59 603-664 147-214 (463)
451 2jwa_A Receptor tyrosine-prote 72.5 3.4 0.00012 28.8 3.3 6 532-537 15-20 (44)
452 2k1k_A Ephrin type-A receptor 52.6 9.9 0.00034 25.7 2.6 13 530-542 8-20 (38)
453 2k9y_A Ephrin type-A receptor 38.1 25 0.00086 24.0 3.0 12 535-546 16-27 (41)
454 1cja_A Protein (actin-fragmin 37.6 1.1E+02 0.0038 31.9 9.0 138 604-749 75-237 (342)
455 2ks1_B Epidermal growth factor 37.4 16 0.00056 25.5 1.8 27 529-556 12-38 (44)
456 2l2t_A Receptor tyrosine-prote 33.4 24 0.00082 24.6 2.2 24 534-557 15-38 (44)
457 2lz0_A Uncharacterized protein 32.4 70 0.0024 26.8 5.5 42 418-460 11-52 (100)
458 3ox7_P MH027; urokinase-type p 27.4 14 0.00049 20.6 0.2 9 54-62 6-14 (23)
459 2lz0_A Uncharacterized protein 26.8 1E+02 0.0034 25.8 5.5 37 349-386 14-50 (100)
460 2knc_A Integrin alpha-IIB; tra 24.6 1.1E+02 0.0038 22.4 4.4 16 532-547 12-27 (54)
461 2l8s_A Integrin alpha-1; trans 20.6 1.1E+02 0.0037 22.4 3.6 15 533-547 10-24 (54)
462 3ls8_A Phosphatidylinositol 3- 20.5 3.7E+02 0.013 30.6 10.2 83 658-748 403-501 (614)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-69 Score=667.62 Aligned_cols=501 Identities=35% Similarity=0.541 Sum_probs=392.6
Q ss_pred hcCCCChHHHHHHHHHHHhCCCCCCCcCCCCCCCCCCCCCccceEecCCCCcEEEEEcCCCCcCcc---cC---------
Q 002349 18 SFGSVDSEDGATLLKIKKSFRDVDNVLYDWTDSPSSDYCVWRGITCDNVTFTVIALNLSGLNLDGE---IS--------- 85 (933)
Q Consensus 18 ~~~~~~~~d~~all~~k~~~~~~~~~l~~w~~~~~~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~---~~--------- 85 (933)
+++...++|++||++||+++.||. .+++|+. ++|||.|.||+|+ +++|++|||+++++.|. +|
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~--~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKN-LLPDWSS--NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTT-SSTTCCT--TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred ccccCCHHHHHHHHHHHhhCCCcc-cccCCCC--CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence 334446889999999999999998 9999974 5799999999998 68999999999999887 43
Q ss_pred --------------CCCCCCCCccEEEccCCcccccCCC--CccCCCCCceecccccccCCCCCccc-c-----------
Q 002349 86 --------------PAVGDLKDLQSIDLRGNRLSGQIPD--EIGDCSSLKSLDLSFNELYGDIPFSI-S----------- 137 (933)
Q Consensus 86 --------------~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~~-~----------- 137 (933)
+.++++++|++|||++|.++|.+|. .|+++++|++|||++|.+.+.+|..+ .
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence 5788889999999999999988887 78888888888888777766655432 1
Q ss_pred --------------------------------------cccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCC
Q 002349 138 --------------------------------------KLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGT 179 (933)
Q Consensus 138 --------------------------------------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 179 (933)
.+++|++|+|++|.+++.+|. ++++++|++|+|++|++++.
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC
T ss_pred CCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc
Confidence 223333333444444433333 44444455555544444433
Q ss_pred cccccc----------------------------------------------cC-CCCcEEeccCccccCccCcCCcCCC
Q 002349 180 LSPDMC----------------------------------------------QL-SGLWYFDVRNNSLTGSIPQNIGNCT 212 (933)
Q Consensus 180 ~~~~~~----------------------------------------------~l-~~L~~L~L~~n~l~~~~p~~l~~l~ 212 (933)
+|..+. .. ++|++|+|++|.+++.+|..+++++
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence 332222 22 4444444444444444455555555
Q ss_pred CCcEEccccccccCcC-------------------------CCCcc----------------------------ccccce
Q 002349 213 SFQVLDLSYNQLSGEI-------------------------PFNIG----------------------------FLQIAT 239 (933)
Q Consensus 213 ~L~~L~L~~N~l~~~~-------------------------p~~~~----------------------------~~~L~~ 239 (933)
+|++|+|++|++++.+ |..+. ..+|++
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence 5555555555554433 33221 123556
Q ss_pred EeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccc
Q 002349 240 LSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQL 319 (933)
Q Consensus 240 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 319 (933)
|++++|++++.+|..++.+++|++|+|++|.+++.+|..|+++++|+.|+|++|++++.+|..+..+++|++|++++|++
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 66666666667777788888888888888888888888888888899999999988888888888899999999999999
Q ss_pred cccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCcccc
Q 002349 320 TGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVEL 399 (933)
Q Consensus 320 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 399 (933)
++.+|..+..+++|+.|++++|++.+.+|.++..+++|++|++++|++++.+|..+..+++|++|++++|.++|.+|..+
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 98889999999999999999999998999999999999999999999999999999999999999999999887777543
Q ss_pred ----------------------------------------------------------------------ccccccceee
Q 002349 400 ----------------------------------------------------------------------SRIGNLDTLD 409 (933)
Q Consensus 400 ----------------------------------------------------------------------~~l~~L~~L~ 409 (933)
..+++|+.||
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 2356789999
Q ss_pred ccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcC
Q 002349 410 MSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSG 489 (933)
Q Consensus 410 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 489 (933)
|++|+++|.+|..|++++.|+.|+|++|+++|.+|..|+++++|+.|||++|+++|.+|..+..+++|++|+|++|+++|
T Consensus 639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhccccc-eeecCCCCCCCcccCCcccCCCCC
Q 002349 490 DVMSLINCLSLS-VLFIGNPGLCGYWLHSACRDSHPT 525 (933)
Q Consensus 490 ~~~~~~~~~~~~-~~~~~N~~~C~~~l~~~~~~~~~~ 525 (933)
.+|...++.++. ..|.|||++||.++. .|......
T Consensus 719 ~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~ 754 (768)
T 3rgz_A 719 PIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNAD 754 (768)
T ss_dssp ECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC--
T ss_pred cCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccC
Confidence 999988888887 779999999999986 88655443
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.7e-58 Score=552.09 Aligned_cols=451 Identities=20% Similarity=0.285 Sum_probs=251.1
Q ss_pred hHHHHHHHHHHHhCCCCC--------CCcCCCCCCCCCCCCCc---cceEecCCCCcEEEEEcCCCCcCcccCCCCCCCC
Q 002349 24 SEDGATLLKIKKSFRDVD--------NVLYDWTDSPSSDYCVW---RGITCDNVTFTVIALNLSGLNLDGEISPAVGDLK 92 (933)
Q Consensus 24 ~~d~~all~~k~~~~~~~--------~~l~~w~~~~~~~~c~w---~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~ 92 (933)
..|+.||.+|++++.++. ....+|+. +.+||.| .||+|+.. +||+.|+|++++++|.+|+++++|+
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~--~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF--NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCC--SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC--CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 569999999999986542 12457975 4799999 99999764 8999999999999999999999999
Q ss_pred CccEEEccCCcc------cc------cCCCCccCCCCCceecccccccCCCCCccccc-ccchhhhhhc-----------
Q 002349 93 DLQSIDLRGNRL------SG------QIPDEIGDCSSLKSLDLSFNELYGDIPFSISK-LKQLEFLILK----------- 148 (933)
Q Consensus 93 ~L~~L~Ls~n~l------~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~----------- 148 (933)
+|++|+|++|++ .| .+|... +.+|+ +++++|.+.+.+|..+.. +..+..+++.
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 182 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCC
T ss_pred cceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccc
Confidence 999999999977 22 333322 34444 555555555555444432 1222222222
Q ss_pred ---------ccCccCCCCcccccCCCCceeeeecCCCCCC-----------------cccccc--cCCCCcEEeccCccc
Q 002349 149 ---------NNQLIGPIPSTLSQLPNLKVFGLRGNNLVGT-----------------LSPDMC--QLSGLWYFDVRNNSL 200 (933)
Q Consensus 149 ---------~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-----------------~~~~~~--~l~~L~~L~L~~n~l 200 (933)
.|++++ +|..++++++|++|+|++|++++. +|..++ ++++|++|+|++|.+
T Consensus 183 l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l 261 (636)
T 4eco_A 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261 (636)
T ss_dssp CCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT
T ss_pred hhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC
Confidence 344554 555555555555555555555543 455554 555555555555555
Q ss_pred cCccCcCCcCCCCCcEEcccccc-ccC-cCCCCccc-------cccceEeccccccccccCc--cccccccccEEeccCC
Q 002349 201 TGSIPQNIGNCTSFQVLDLSYNQ-LSG-EIPFNIGF-------LQIATLSLQGNQLTGKIPS--VIGLMQALAVLDLSCN 269 (933)
Q Consensus 201 ~~~~p~~l~~l~~L~~L~L~~N~-l~~-~~p~~~~~-------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N 269 (933)
.+.+|..++++++|++|+|++|+ +++ .+|..++. .+|++|+|++|+++ .+|. .++.+++|++|++++|
T Consensus 262 ~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence 55555555555555555555554 554 44444433 34555555555555 4444 4555555555555555
Q ss_pred cCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCc-ceEeeeccccccccCCccccccc--cccccccccccCCCC
Q 002349 270 MLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTK-LHYLELNDNQLTGHIPPALGKLT--DLFDLNVANNHLEGP 346 (933)
Q Consensus 270 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~~~~~l~~l~--~L~~L~L~~N~l~~~ 346 (933)
+++|.+| .|+++++|++|+|++|+++ .+|..+..+++ |++|++++|+++ .+|..+..++ +|+.|++++|++.+.
T Consensus 341 ~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 341 QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp CCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred cCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCc
Confidence 5554444 5555555555555555555 44555555555 555555555555 4444444433 455555555555555
Q ss_pred CCCCcc-------cCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccc-------cccceeeccC
Q 002349 347 IPDNLS-------SCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRI-------GNLDTLDMSN 412 (933)
Q Consensus 347 ~p~~l~-------~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-------~~L~~L~Ls~ 412 (933)
+|..+. .+++|+.|++++|+++...+..+..+++|++|+|++|+++...+..+... ++|+.|+|++
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred chhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcC
Confidence 555444 44455555555555553333333445555555555555552222222211 1555555555
Q ss_pred CccCCCCCCCCC--CccccccccccCcccccccccccccccccceEEc------cCCccccccchhhccccccceeeecC
Q 002349 413 NKISGSIPSPLG--DLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDL------SHNHLTGVIPEELSQLQNMFSLRLDY 484 (933)
Q Consensus 413 N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~l~~ 484 (933)
|+|+ .+|..+. .+++|+.|+|++|+|++ +|..+.++++|+.|+| ++|++.+.+|..+..+++|+.|+|++
T Consensus 498 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 498 NKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575 (636)
T ss_dssp SCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred CcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence 5555 4444444 55555555555555554 4555555555555555 33445555555555555555555555
Q ss_pred CCC
Q 002349 485 NNL 487 (933)
Q Consensus 485 N~l 487 (933)
|++
T Consensus 576 N~l 578 (636)
T 4eco_A 576 NDI 578 (636)
T ss_dssp SCC
T ss_pred CcC
Confidence 555
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.4e-57 Score=549.10 Aligned_cols=475 Identities=18% Similarity=0.270 Sum_probs=403.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcCCCCCCC---CCCC--CCc------------cceEecCCCCcEEEEEcCCCCcCccc
Q 002349 22 VDSEDGATLLKIKKSFRDVDNVLYDWTDSP---SSDY--CVW------------RGITCDNVTFTVIALNLSGLNLDGEI 84 (933)
Q Consensus 22 ~~~~d~~all~~k~~~~~~~~~l~~w~~~~---~~~~--c~w------------~gv~C~~~~~~v~~l~l~~~~l~~~~ 84 (933)
...+|+.||++||+++.+| +|+.+. ..+| |.| .||+|+. ++||+.|+|++++++|.+
T Consensus 266 ~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEE
T ss_pred cchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcC
Confidence 3467999999999999887 897653 2344 999 9999986 689999999999999999
Q ss_pred CCCCCCCCCccEEEc-cCCcccccCCCCc---------------------------------------------------
Q 002349 85 SPAVGDLKDLQSIDL-RGNRLSGQIPDEI--------------------------------------------------- 112 (933)
Q Consensus 85 ~~~l~~l~~L~~L~L-s~n~l~~~~p~~l--------------------------------------------------- 112 (933)
|++|++|++|++|+| ++|.++|..|-..
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence 999999999999999 8999888744221
Q ss_pred cCCCCCceecccc--cccCCCCCcccccccchhhhhhcccCccC-----------------CCCcccc--cCCCCceeee
Q 002349 113 GDCSSLKSLDLSF--NELYGDIPFSISKLKQLEFLILKNNQLIG-----------------PIPSTLS--QLPNLKVFGL 171 (933)
Q Consensus 113 ~~l~~L~~L~Ls~--n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~~L~~L~L 171 (933)
.....++.+.++. |.++| +|..|+++++|++|+|++|.+++ .+|..++ ++++|++|+|
T Consensus 420 ~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L 498 (876)
T 4ecn_A 420 DSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498 (876)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred ccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence 1223445555554 88998 99999999999999999999998 3899988 9999999999
Q ss_pred ecCCCCCCcccccccCCCCcEEeccCcc-ccC-ccCcCCcCCC-------CCcEEccccccccCcCCC--Ccc-ccccce
Q 002349 172 RGNNLVGTLSPDMCQLSGLWYFDVRNNS-LTG-SIPQNIGNCT-------SFQVLDLSYNQLSGEIPF--NIG-FLQIAT 239 (933)
Q Consensus 172 ~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~L~~N~l~~~~p~--~~~-~~~L~~ 239 (933)
++|++.+.+|..|+++++|++|+|++|+ ++| .+|..+++++ +|++|+|++|+++ .+|. .+. ..+|++
T Consensus 499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~ 577 (876)
T 4ecn_A 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGL 577 (876)
T ss_dssp ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCE
T ss_pred cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCE
Confidence 9999999999999999999999999998 998 8898777666 9999999999999 8887 554 457999
Q ss_pred EeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCC-ccEEEeeCCccCCCCCCccccCCc--ceEeeecc
Q 002349 240 LSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSY-TEKLYLHSNKLTGHIPPELGNMTK--LHYLELND 316 (933)
Q Consensus 240 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~--L~~L~L~~ 316 (933)
|+|++|+++ .+| .|+.+++|+.|+|++|.++ .+|..+.++++ |+.|+|++|+++ .+|..+..++. |+.|+|++
T Consensus 578 L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~ 653 (876)
T 4ecn_A 578 LDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSY 653 (876)
T ss_dssp EECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCS
T ss_pred EECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcC
Confidence 999999999 778 8999999999999999999 88889999999 999999999999 78888887765 99999999
Q ss_pred ccccccCCccc---c--ccccccccccccccCCCCCCCCc-ccCCCCCceeccCcccCCCCCcc-ccc-------ccccc
Q 002349 317 NQLTGHIPPAL---G--KLTDLFDLNVANNHLEGPIPDNL-SSCTNLNSLNVHGNKLNGTIPPA-FQR-------LESMT 382 (933)
Q Consensus 317 N~l~~~~~~~l---~--~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~l~~N~l~~~~~~~-~~~-------l~~L~ 382 (933)
|++++.+|... . .+++|+.|++++|++. .+|..+ ..+++|+.|+|++|+++ .+|.. +.. +++|+
T Consensus 654 N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCC
T ss_pred CcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCcc
Confidence 99998766432 2 3458999999999999 555554 58899999999999999 45544 432 33999
Q ss_pred eecCCcccccCCCccccc--cccccceeeccCCccCCCCCCCCCCccccccccccC------cccccccccccccccccc
Q 002349 383 YLNLSLNNIRGPIPVELS--RIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSR------NQLTGFIPGEFGNLRSVM 454 (933)
Q Consensus 383 ~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~ 454 (933)
+|+|++|+++ .+|..+. .+++|+.|+|++|+|++ +|..+..+++|+.|+|++ |++.+.+|..|.++++|+
T Consensus 732 ~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 732 TIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp EEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred EEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence 9999999999 7788887 99999999999999997 799999999999999976 889999999999999999
Q ss_pred eEEccCCccccccchhhccccccceeeecCCCCcCcccchh-hccccc-eeecCCCCCC--Cccc
Q 002349 455 EIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSLI-NCLSLS-VLFIGNPGLC--GYWL 515 (933)
Q Consensus 455 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~~~~~-~~~~~N~~~C--~~~l 515 (933)
.|+|++|+| +.+|..+. ++|+.|+|++|++....+... ...... ..+.+|++.| ||+.
T Consensus 810 ~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~ 871 (876)
T 4ecn_A 810 QLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871 (876)
T ss_dssp EEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCGG
T ss_pred EEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCCC
Confidence 999999999 68888766 699999999999987654321 111222 4566776654 7764
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.7e-54 Score=515.25 Aligned_cols=456 Identities=23% Similarity=0.223 Sum_probs=353.0
Q ss_pred ccceEecCC---------CCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceeccccccc
Q 002349 58 WRGITCDNV---------TFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNEL 128 (933)
Q Consensus 58 w~gv~C~~~---------~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 128 (933)
+.-+.|++. ...++.|+|++|.+++..|..|+++++|++|+|++|++++..|..|+++++|++|+|++|.+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 556888653 24789999999999998899999999999999999999988899999999999999999999
Q ss_pred CCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCC
Q 002349 129 YGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNI 208 (933)
Q Consensus 129 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 208 (933)
++..|..|+++++|++|+|++|++++..|..++++++|++|+|++|++.+...+.+..+++|++|++++|.+++..|..+
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 173 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh
Confidence 98889999999999999999999998778889999999999999999998665666679999999999999998888889
Q ss_pred cCCCCCc--EEccccccccCcCCCCcccc---------------------------------------------------
Q 002349 209 GNCTSFQ--VLDLSYNQLSGEIPFNIGFL--------------------------------------------------- 235 (933)
Q Consensus 209 ~~l~~L~--~L~L~~N~l~~~~p~~~~~~--------------------------------------------------- 235 (933)
+.+++|+ .|++++|++++..|..+...
T Consensus 174 ~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~ 253 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253 (606)
T ss_dssp HTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG
T ss_pred hhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhc
Confidence 9999998 89999999887666543221
Q ss_pred -ccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccc----------
Q 002349 236 -QIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELG---------- 304 (933)
Q Consensus 236 -~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~---------- 304 (933)
+++.|++++|++++..+..|+.+++|++|++++|.++ .+|..+.++++|++|++++|++++..|..+.
T Consensus 254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 4555666666666666666666666666666666666 4555666666666666666666654444444
Q ss_pred ---------------cCCcceEeeeccccccccC--CccccccccccccccccccCCCCCCCCcccCCCCCceeccCccc
Q 002349 305 ---------------NMTKLHYLELNDNQLTGHI--PPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKL 367 (933)
Q Consensus 305 ---------------~l~~L~~L~L~~N~l~~~~--~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l 367 (933)
.+++|++|++++|.+++.. +..+..+++|+.|++++|++.+..|..+..+++|+.|++++|++
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 4455555555555555433 44556666666666666666666666666677777777777777
Q ss_pred CCCCCc-ccccccccceecCCcccccCCCccccccccccceeeccCCccCCC---CCCCCCCccccccccccCccccccc
Q 002349 368 NGTIPP-AFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGS---IPSPLGDLEHLLKLNLSRNQLTGFI 443 (933)
Q Consensus 368 ~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~ 443 (933)
++..+. .|..+++|++|++++|.+++..|..+..+++|++|+|++|++++. .+..+..+++|+.|+|++|++++..
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 655543 366777777777777777776777777777777777777777652 2355777788888888888888778
Q ss_pred ccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcccc-hhhccccc-eeecCCCCCCCccc
Q 002349 444 PGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMS-LINCLSLS-VLFIGNPGLCGYWL 515 (933)
Q Consensus 444 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~-~~~~~N~~~C~~~l 515 (933)
|..|.++++|++|+|++|++++..|..+..+++| .|++++|++++.++. +..+..+. +.+.+|||.|+|..
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 8888888888888888888888888888888888 888888888887765 35566666 77899999999865
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-53 Score=529.12 Aligned_cols=454 Identities=21% Similarity=0.220 Sum_probs=359.4
Q ss_pred CCccceEecCCCCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccC-CCCccCCCCCceecccccccCCCCCc
Q 002349 56 CVWRGITCDNVTFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQI-PDEIGDCSSLKSLDLSFNELYGDIPF 134 (933)
Q Consensus 56 c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~ 134 (933)
|.|..|.+ ...+++.|||++|.+++..+..|.++++|++|+|++|.+.+.+ |..|+++++|++|+|++|.+.+..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 46777777 4568899999999999988999999999999999999777676 77899999999999999999988899
Q ss_pred ccccccchhhhhhcccCccCCCCcc--cccCCCCceeeeecCCCCCCcc-cccccCCCCcEEeccCccccCccCcCCcCC
Q 002349 135 SISKLKQLEFLILKNNQLIGPIPST--LSQLPNLKVFGLRGNNLVGTLS-PDMCQLSGLWYFDVRNNSLTGSIPQNIGNC 211 (933)
Q Consensus 135 ~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 211 (933)
.|+++++|++|+|++|.+++.+|.. |+++++|++|+|++|.+.+..+ ..|+++++|++|+|++|.+++..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999999877765 9999999999999999988765 578999999999999999998888888777
Q ss_pred --CCCcEEccccccccCcCCCCccc-------cccceEeccccccccccCccccc-------------------------
Q 002349 212 --TSFQVLDLSYNQLSGEIPFNIGF-------LQIATLSLQGNQLTGKIPSVIGL------------------------- 257 (933)
Q Consensus 212 --~~L~~L~L~~N~l~~~~p~~~~~-------~~L~~L~L~~n~l~~~~p~~~~~------------------------- 257 (933)
++|+.|++++|.+++..|..+.. ..|++|+|++|++++..+..+..
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 77888888888877766654322 23677777777666554443322
Q ss_pred -------------cccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCC
Q 002349 258 -------------MQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIP 324 (933)
Q Consensus 258 -------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 324 (933)
.++|+.|+|++|.+.+..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 1457777777777776667777777777777777777776666677777777777777777776667
Q ss_pred ccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCC------------------C--------------
Q 002349 325 PALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTI------------------P-------------- 372 (933)
Q Consensus 325 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~------------------~-------------- 372 (933)
..|..+++|+.|++++|++.+..+..|..+++|+.|++++|.+++.. |
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N 411 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN 411 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSC
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccC
Confidence 77777777777777777776666666777777777777777665321 1
Q ss_pred --------cccccccccceecCCcccccCCCcc-ccccccccceeeccCCccC-----CCCCCCCCCccccccccccCcc
Q 002349 373 --------PAFQRLESMTYLNLSLNNIRGPIPV-ELSRIGNLDTLDMSNNKIS-----GSIPSPLGDLEHLLKLNLSRNQ 438 (933)
Q Consensus 373 --------~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~ 438 (933)
..+..+++|++|+|++|++++..+. .+..+++|+.|+|++|.++ +..+..|.++++|+.|+|++|+
T Consensus 412 ~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 491 (844)
T 3j0a_A 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491 (844)
T ss_dssp CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH
T ss_pred ccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCc
Confidence 1133677788888888888754433 3556788888888888886 4455678899999999999999
Q ss_pred cccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcccchhhccccc-eeecCCCCCCCccc
Q 002349 439 LTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSLINCLSLS-VLFIGNPGLCGYWL 515 (933)
Q Consensus 439 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~-~~~~~N~~~C~~~l 515 (933)
|++..|..|.++++|+.|+|++|+|++..|..+. ++|+.|+|++|++++.+|... ..+. +.+.+|||.|+|.+
T Consensus 492 l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~--~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF--VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp HTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC--SSCCEEEEEEECCCCSSSC
T ss_pred ccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh--CCcCEEEecCCCccccccc
Confidence 9999999999999999999999999988777766 899999999999999888643 3455 77899999999975
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.9e-54 Score=527.62 Aligned_cols=420 Identities=37% Similarity=0.571 Sum_probs=341.4
Q ss_pred cEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcc----------------------cccCCCCccCC-CCCceecccc
Q 002349 69 TVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRL----------------------SGQIPDEIGDC-SSLKSLDLSF 125 (933)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l----------------------~~~~p~~l~~l-~~L~~L~Ls~ 125 (933)
.+..|+|++|.+++.+|..++++++|++|+|++|.+ +|.+|..+.++ ++|++|+|++
T Consensus 224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303 (768)
T ss_dssp SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCS
T ss_pred CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcC
Confidence 345556666666555555555555555555555544 44555555543 6666666666
Q ss_pred cccCCCCCcccccccchhhhhhcccCccCCCCcc-cccCCCCceeeeecCCCCCCcccccccCC-CCcEEeccCccccCc
Q 002349 126 NELYGDIPFSISKLKQLEFLILKNNQLIGPIPST-LSQLPNLKVFGLRGNNLVGTLSPDMCQLS-GLWYFDVRNNSLTGS 203 (933)
Q Consensus 126 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~ 203 (933)
|.+++.+|..|+++++|++|+|++|.++|.+|.. ++++++|++|+|++|++++.+|..+..++ +|++|++++|.+++.
T Consensus 304 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~ 383 (768)
T 3rgz_A 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383 (768)
T ss_dssp SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC
Confidence 6666666666666666666666666666666654 66666666666666666666666666665 677777777777666
Q ss_pred cCcCCcC--CCCCcEEccccccccCcCCCCccc-cccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCC
Q 002349 204 IPQNIGN--CTSFQVLDLSYNQLSGEIPFNIGF-LQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILG 280 (933)
Q Consensus 204 ~p~~l~~--l~~L~~L~L~~N~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 280 (933)
+|..+.. +++|++|++++|++++.+|..+.. .+|++|+|++|++++.+|..++.+++|+.|+|++|.+++.+|..+.
T Consensus 384 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 463 (768)
T 3rgz_A 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463 (768)
T ss_dssp CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 6666655 677888888888888888877754 4799999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCce
Q 002349 281 NLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSL 360 (933)
Q Consensus 281 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 360 (933)
.+++|++|+|++|++++.+|..+.++++|++|+|++|++++.+|.+++.+++|+.|++++|++.+.+|..+..+++|+.|
T Consensus 464 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcccCCCCCccc-----------------------------------------------------------------
Q 002349 361 NVHGNKLNGTIPPAF----------------------------------------------------------------- 375 (933)
Q Consensus 361 ~l~~N~l~~~~~~~~----------------------------------------------------------------- 375 (933)
++++|+++|.+|..+
T Consensus 544 ~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~ 623 (768)
T 3rgz_A 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623 (768)
T ss_dssp ECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEE
T ss_pred ECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceeccc
Confidence 999999988777544
Q ss_pred -----ccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccc
Q 002349 376 -----QRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNL 450 (933)
Q Consensus 376 -----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 450 (933)
..+++|++|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|..|+++++|+.|+|++|+++|.+|..++++
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence 335679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEccCCccccccchhhccccccceeeecCCCCcC
Q 002349 451 RSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSG 489 (933)
Q Consensus 451 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 489 (933)
++|++|||++|+++|.+|.. ..+.++....+.+|+.-|
T Consensus 704 ~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 704 TMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp CCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEE
T ss_pred CCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhc
Confidence 99999999999999999964 456667777788886433
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.9e-53 Score=505.44 Aligned_cols=443 Identities=20% Similarity=0.195 Sum_probs=378.2
Q ss_pred CcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhh
Q 002349 68 FTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLIL 147 (933)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (933)
.+++.|+|++|.+++..+..|.++++|++|+|++|++++..|..|+++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 57899999999999988889999999999999999999888999999999999999999999888999999999999999
Q ss_pred cccCccCCCCcccccCCCCceeeeecCCCCC-CcccccccCCCCcEEeccCccccCccCcCCcCCCCCc----EEccccc
Q 002349 148 KNNQLIGPIPSTLSQLPNLKVFGLRGNNLVG-TLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQ----VLDLSYN 222 (933)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~N 222 (933)
++|.+++..|..++++++|++|+|++|++.+ .+|..|+++++|++|++++|++++..|..++.+++|+ +|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 9999998887899999999999999999986 5799999999999999999999998888888887765 7999999
Q ss_pred cccCcCCCCccccccceEeccccccc------------------------------------------------------
Q 002349 223 QLSGEIPFNIGFLQIATLSLQGNQLT------------------------------------------------------ 248 (933)
Q Consensus 223 ~l~~~~p~~~~~~~L~~L~L~~n~l~------------------------------------------------------ 248 (933)
++++..+..+...+|++|++++|.++
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 98876666666667777887777653
Q ss_pred ----cccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCC--------------------Cccc
Q 002349 249 ----GKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIP--------------------PELG 304 (933)
Q Consensus 249 ----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p--------------------~~l~ 304 (933)
+.+|. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.+| ..+.
T Consensus 272 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~ 347 (606)
T 3vq2_A 272 NDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKV 347 (606)
T ss_dssp TTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCC
T ss_pred ccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhc
Confidence 12222 3444455555555555542 22 444444455555554444 2333 2456
Q ss_pred cCCcceEeeecccccccc--CCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCC-ccccccccc
Q 002349 305 NMTKLHYLELNDNQLTGH--IPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIP-PAFQRLESM 381 (933)
Q Consensus 305 ~l~~L~~L~L~~N~l~~~--~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L 381 (933)
.+++|++|++++|++++. .|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|++.+..| ..|..+++|
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 777888888888888865 37788889999999999999884 66889999999999999999998887 689999999
Q ss_pred ceecCCcccccCCCccccccccccceeeccCCccCC-CCCCCCCCccccccccccCcccccccccccccccccceEEccC
Q 002349 382 TYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISG-SIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSH 460 (933)
Q Consensus 382 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 460 (933)
++|++++|.+++..|..+..+++|++|+|++|.+++ .+|..|..+++|+.|+|++|++++..|..|.++++|++|+|++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 999999999999999999999999999999999997 4799999999999999999999999999999999999999999
Q ss_pred CccccccchhhccccccceeeecCCCCcCcccchhhccc-cc-eeecCCCCCCCccc
Q 002349 461 NHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSLINCLS-LS-VLFIGNPGLCGYWL 515 (933)
Q Consensus 461 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~~-~~~~~N~~~C~~~l 515 (933)
|++++.+|..+..+++|+.|+|++|+++..+..+..+.. +. +.+.+|||.|+|++
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999999999999999999999999987777666653 66 78899999999975
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.8e-52 Score=505.98 Aligned_cols=460 Identities=23% Similarity=0.217 Sum_probs=315.0
Q ss_pred CCccceEecCC---------CCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceeccccc
Q 002349 56 CVWRGITCDNV---------TFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFN 126 (933)
Q Consensus 56 c~w~gv~C~~~---------~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 126 (933)
|.++.|.|+.. ..+++.|+|++|++++..+..|+++++|++|+|++|.+++..|..|+++++|++|+|++|
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred eECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 45555666532 247889999999999877778999999999999999999888888999999999999999
Q ss_pred ccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCc
Q 002349 127 ELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQ 206 (933)
Q Consensus 127 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 206 (933)
.+++..+..|+++++|++|+|++|++++..|..|+++++|++|+|++|.+++..|..++++++|++|++++|.+++..+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 99865555799999999999999999887778899999999999999999988888888899999999999988876665
Q ss_pred CCc--CCCCCcEEccccccccCcCCCCcc---------------------------------------------------
Q 002349 207 NIG--NCTSFQVLDLSYNQLSGEIPFNIG--------------------------------------------------- 233 (933)
Q Consensus 207 ~l~--~l~~L~~L~L~~N~l~~~~p~~~~--------------------------------------------------- 233 (933)
.+. .+++|++|++++|++++..|..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 543 457788888888777765554321
Q ss_pred c---cccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCC------------------------------
Q 002349 234 F---LQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILG------------------------------ 280 (933)
Q Consensus 234 ~---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------------ 280 (933)
. .+|++|+|++|++++..|..|+.+++|++|+|++|.+++..|..|.
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 1 1256666666666666666666666666666666666554443332
Q ss_pred ---CCCCccEEEeeCCccCCCCCCccccCCcceEeeecc----------------------------ccccccCCccccc
Q 002349 281 ---NLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELND----------------------------NQLTGHIPPALGK 329 (933)
Q Consensus 281 ---~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~----------------------------N~l~~~~~~~l~~ 329 (933)
.+++|++|++++|++++..+..|.++++|++|++++ |++++..|..|..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 334444444444555544444444444444444333 2333333444555
Q ss_pred cccccccccccccCCCCCC-CCcccCCCCCceeccCcccCC--------------------------CCCcccccccccc
Q 002349 330 LTDLFDLNVANNHLEGPIP-DNLSSCTNLNSLNVHGNKLNG--------------------------TIPPAFQRLESMT 382 (933)
Q Consensus 330 l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~~--------------------------~~~~~~~~l~~L~ 382 (933)
+++|+.|++++|++.+.+| ..+.++++|++|++++|++.+ .+|..|..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 5555555555555544333 334444444444444444332 2344455555566
Q ss_pred eecCCcccccCCCccccccccccceeeccCCccCCCC--------CCCCCCccccccccccCcccccccccccccccccc
Q 002349 383 YLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSI--------PSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVM 454 (933)
Q Consensus 383 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 454 (933)
+|+|++|++++..+..|..+++|++|+|++|++++.. +..|.++++|+.|+|++|+++.+.+..|.++++|+
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 6666666666555555666666666666666665431 12356667777777777777755555788888888
Q ss_pred eEEccCCccccccchhhccccccceeeecCCCCcCcccchh--hccccc-eeecCCCCCCCccc
Q 002349 455 EIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSLI--NCLSLS-VLFIGNPGLCGYWL 515 (933)
Q Consensus 455 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~~~~~-~~~~~N~~~C~~~l 515 (933)
.|+|++|+|++..+..|..+++|+.|+|++|++++.++... .+..+. +.+.+|||.|+|..
T Consensus 564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 88888888887777778888889999999998888877643 456666 77899999999974
No 9
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=8.6e-52 Score=450.95 Aligned_cols=259 Identities=24% Similarity=0.402 Sum_probs=209.9
Q ss_pred hccCcceeeecccceeEEEEEEc------CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK------NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLL 671 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 671 (933)
++|...++||+|+||+||+|+++ +++.||||+++.......++|.+|++++++++|||||+++|+|.+++..++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 46777889999999999999975 367899999987777777889999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhcCCC------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCe
Q 002349 672 FYDFMENGSLWDILHGPT------------KKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEA 739 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~ 739 (933)
|||||++|+|.++++... ...++++.+++.++.|+|+||+|||++ +||||||||+|||+++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEECCCCcE
Confidence 999999999999996432 234699999999999999999999965 99999999999999999999
Q ss_pred EEeecccccccccCCCc-eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcc
Q 002349 740 HLTDFGIAKSLCVSKSY-TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTAN 817 (933)
Q Consensus 740 kl~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~ 817 (933)
||+|||+|+........ ......||+.|||||++.+..++.++|||||||++|||+| |+.||.+....+.......
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~-- 275 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQ-- 275 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHH--
T ss_pred EEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHc--
Confidence 99999999876433322 2345679999999999999999999999999999999999 8999987655443322211
Q ss_pred cccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 818 NAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
+. .+..+. .++.++.+++.+||+.||++||||+||+++|+.+..
T Consensus 276 g~-----~~~~p~-----~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~ 319 (329)
T 4aoj_A 276 GR-----ELERPR-----ACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQ 319 (329)
T ss_dssp TC-----CCCCCT-----TCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHH
T ss_pred CC-----CCCCcc-----cccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhh
Confidence 11 111111 234678999999999999999999999999988754
No 10
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=6.4e-52 Score=445.65 Aligned_cols=258 Identities=25% Similarity=0.416 Sum_probs=214.3
Q ss_pred hccCcceeeecccceeEEEEEEc------CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK------NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLL 671 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 671 (933)
++|...+.||+|+||+||+|++. +++.||||+++.......++|.+|++++++++|||||+++|+|.+++..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 57888899999999999999875 367899999987776777889999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhcCC----------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEE
Q 002349 672 FYDFMENGSLWDILHGP----------TKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHL 741 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~----------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl 741 (933)
|||||++|+|.++++.. .....+++.++..++.|+|+||+|||++ +||||||||+|||+++++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCCCcEEE
Confidence 99999999999999632 1245799999999999999999999966 9999999999999999999999
Q ss_pred eecccccccccCCCce-eeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccc
Q 002349 742 TDFGIAKSLCVSKSYT-STYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNA 819 (933)
Q Consensus 742 ~DfGla~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 819 (933)
+|||+|+......... .....||+.|||||++.+..|+.++|||||||++|||+| |+.||.+....+...... .+.
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~--~~~ 247 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECIT--QGR 247 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHH--HTC
T ss_pred CCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH--cCC
Confidence 9999998764433322 233569999999999999999999999999999999999 899998765443332221 111
Q ss_pred cccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 820 VMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
. +..+. .++.++.+++.+||+.||++|||++||.+.|+.+.
T Consensus 248 ~-----~~~p~-----~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~ 288 (299)
T 4asz_A 248 V-----LQRPR-----TCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLA 288 (299)
T ss_dssp C-----CCCCT-----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred C-----CCCCc-----cchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 1 11111 23467899999999999999999999999998764
No 11
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-51 Score=440.27 Aligned_cols=258 Identities=29% Similarity=0.437 Sum_probs=206.2
Q ss_pred hccCcceeeecccceeEEEEEEcCCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEe
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDF 675 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 675 (933)
+++...+.||+|+||+||+|++++ .||||+++... .+..++|.+|++++++++|||||+++|++.+ +..++||||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy 112 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQW 112 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred HHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEc
Confidence 577888999999999999998764 59999986543 4456789999999999999999999999864 568999999
Q ss_pred cCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCC-
Q 002349 676 MENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSK- 754 (933)
Q Consensus 676 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~- 754 (933)
|++|+|.++++. ...++++.++..|+.|+|+||+|||++ +||||||||+|||+++++.+||+|||+|+......
T Consensus 113 ~~gGsL~~~l~~--~~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~ 187 (307)
T 3omv_A 113 CEGSSLYKHLHV--QETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG 187 (307)
T ss_dssp CSSCBHHHHHHT--SCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC------
T ss_pred CCCCCHHHHHhh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceecccCCc
Confidence 999999999973 456799999999999999999999965 99999999999999999999999999998764322
Q ss_pred CceeeeecccccccCcccccc---CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccc
Q 002349 755 SYTSTYIMGTIGYIDPEYART---SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISAT 831 (933)
Q Consensus 755 ~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (933)
.......+||+.|||||++.+ ..|+.++|||||||++|||+||+.||.+................ .|.....
T Consensus 188 ~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~-----~p~~~~~ 262 (307)
T 3omv_A 188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYA-----SPDLSKL 262 (307)
T ss_dssp ------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCC-----CCCSTTS
T ss_pred ceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCC-----CCCcccc
Confidence 223445689999999999864 35899999999999999999999999876554443332221111 1111111
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 832 CKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 832 ~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
. ..++..+.+++.+||+.||++||||+||++.|+.+.
T Consensus 263 ~--~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~ 299 (307)
T 3omv_A 263 Y--KNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ 299 (307)
T ss_dssp C--TTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred c--ccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence 1 123467899999999999999999999999887654
No 12
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=3.7e-51 Score=441.65 Aligned_cols=257 Identities=21% Similarity=0.346 Sum_probs=211.6
Q ss_pred ccCcceeeecccceeEEEEEEc------CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEE
Q 002349 599 NLSEKYIIGYGASSTVYKCVLK------NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLL 671 (933)
Q Consensus 599 ~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 671 (933)
+++..+.||+|+||+||+|.+. .++.||||+++... ....++|.+|+.++++++|||||+++|+|.+++..++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence 4566788999999999999974 35789999997643 3456789999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhcCCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCC
Q 002349 672 FYDFMENGSLWDILHGPT-------------KKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFE 738 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~ 738 (933)
|||||++|+|.++|+... ....+++.++..++.|||+||+|||++ +||||||||+|||+++++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGC
T ss_pred EEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEECCCCC
Confidence 999999999999996421 124689999999999999999999966 9999999999999999999
Q ss_pred eEEeecccccccccCCCc-eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhc
Q 002349 739 AHLTDFGIAKSLCVSKSY-TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTA 816 (933)
Q Consensus 739 ~kl~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~ 816 (933)
+||+|||+|+........ ......||+.|||||++.++.|+.++|||||||++|||+| |+.||.+....+......
T Consensus 184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~-- 261 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIR-- 261 (308)
T ss_dssp EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHH--
T ss_pred EEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHH--
Confidence 999999999876433322 2345679999999999999999999999999999999998 899998765443322211
Q ss_pred ccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 817 NNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
.+.. +..+. .++..+.+++.+||+.||++||||+||++.|+.+.
T Consensus 262 ~~~~-----~~~p~-----~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 262 NRQV-----LPCPD-----DCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp TTCC-----CCCCT-----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred cCCC-----CCCcc-----cchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhcc
Confidence 1111 11111 23567899999999999999999999999998753
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.7e-50 Score=479.03 Aligned_cols=423 Identities=20% Similarity=0.208 Sum_probs=371.9
Q ss_pred cEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhc
Q 002349 69 TVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILK 148 (933)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 148 (933)
.+..|+|++|.+++..|..|+++++|++|+|++|++++..|..|+++++|++|+|++|.+++..|..++++++|++|+|+
T Consensus 58 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~ 137 (606)
T 3t6q_A 58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLG 137 (606)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECC
T ss_pred cceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECC
Confidence 57789999999998888889999999999999999988888899999999999999999987667788899999999999
Q ss_pred ccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCc--EEeccCccccC------------------------
Q 002349 149 NNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLW--YFDVRNNSLTG------------------------ 202 (933)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~--~L~L~~n~l~~------------------------ 202 (933)
+|++++..+..+..+++|++|+|++|++++..+..++.+++|+ .|++++|.+++
T Consensus 138 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~ 217 (606)
T 3t6q_A 138 SNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLV 217 (606)
T ss_dssp SSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHH
T ss_pred CCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHH
Confidence 9998874434455588888888888888877676677766666 56666655543
Q ss_pred ---------------------------------------------------ccCcCCcCCCCCcEEccccccccCcCCCC
Q 002349 203 ---------------------------------------------------SIPQNIGNCTSFQVLDLSYNQLSGEIPFN 231 (933)
Q Consensus 203 ---------------------------------------------------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 231 (933)
..+..|+++++|++|++++|+++ .+|..
T Consensus 218 ~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~ 296 (606)
T 3t6q_A 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG 296 (606)
T ss_dssp HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSS
T ss_pred HhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChh
Confidence 33444777889999999999998 66665
Q ss_pred cc-ccccceEeccccccccccCccccccccccEEeccCCcCcCCCCC-CCCCCCCccEEEeeCCccCCCC--CCccccCC
Q 002349 232 IG-FLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPP-ILGNLSYTEKLYLHSNKLTGHI--PPELGNMT 307 (933)
Q Consensus 232 ~~-~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~ 307 (933)
+. ..+|++|++++|++++..|..+..+++|++|++++|.+.+.++. .+.++++|++|++++|.+++.. +..+..++
T Consensus 297 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 376 (606)
T 3t6q_A 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376 (606)
T ss_dssp CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT
T ss_pred hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCC
Confidence 54 45799999999999988888999999999999999999866554 5999999999999999999766 78899999
Q ss_pred cceEeeeccccccccCCccccccccccccccccccCCCCCCC-CcccCCCCCceeccCcccCCCCCcccccccccceecC
Q 002349 308 KLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPD-NLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNL 386 (933)
Q Consensus 308 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 386 (933)
+|++|++++|++++..|..+..+++|+.|++++|++.+..+. .+..+++|+.|++++|++++..|..|..+++|++|++
T Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence 999999999999999999999999999999999999877654 4899999999999999999999999999999999999
Q ss_pred CcccccCC---CccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCcc
Q 002349 387 SLNNIRGP---IPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHL 463 (933)
Q Consensus 387 ~~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 463 (933)
++|.+++. .+..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++| .|+|++|++
T Consensus 457 ~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l 535 (606)
T 3t6q_A 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535 (606)
T ss_dssp TTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred CCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc
Confidence 99999863 33678999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred ccccchhhccccccceeeecCCCCcCcccc
Q 002349 464 TGVIPEELSQLQNMFSLRLDYNNLSGDVMS 493 (933)
Q Consensus 464 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~ 493 (933)
++.+|..+..+++|+.|++++|+|+|..+.
T Consensus 536 ~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 536 SIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999999999999999999997763
No 14
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=8.7e-51 Score=441.73 Aligned_cols=250 Identities=24% Similarity=0.349 Sum_probs=212.6
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEec
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFM 676 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~ 676 (933)
+.|+..+.||+|+||+||+|+++ +|+.||||++........+.+.+|++++++++|||||++++++.+++..|+|||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 46888999999999999999986 58899999997665555677899999999999999999999999999999999999
Q ss_pred CCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCCc
Q 002349 677 ENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSY 756 (933)
Q Consensus 677 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~ 756 (933)
+||+|.+++. ...+++.++..++.|++.||+|||++ +||||||||+|||++.++.+||+|||+|+.+.... .
T Consensus 154 ~gg~L~~~l~----~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~-~ 225 (346)
T 4fih_A 154 EGGALTDIVT----HTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV-P 225 (346)
T ss_dssp TTEEHHHHHH----HSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSS-C
T ss_pred CCCcHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCCC-C
Confidence 9999999995 35699999999999999999999966 99999999999999999999999999998764332 2
Q ss_pred eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccccCHH
Q 002349 757 TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDLG 836 (933)
Q Consensus 757 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (933)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+......+...... ..+.+... ..
T Consensus 226 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~-------~~~~~~~~---~~ 295 (346)
T 4fih_A 226 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-------LPPRLKNL---HK 295 (346)
T ss_dssp CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHS-------SCCCCSCG---GG
T ss_pred cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcC-------CCCCCCcc---cc
Confidence 344578999999999999999999999999999999999999999877655544332211 11111111 11
Q ss_pred HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 837 AVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 837 ~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
.+..+.+++.+||+.||++|||++|++++
T Consensus 296 ~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 296 VSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp SCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 23578899999999999999999999875
No 15
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=7.5e-51 Score=442.93 Aligned_cols=251 Identities=25% Similarity=0.342 Sum_probs=205.2
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 674 (933)
++|+..+.||+|+||+||+|+++ +++.||||++.... ....+.+.+|++++++++|||||++++++.+++..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 68999999999999999999976 58999999996543 3456779999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCC
Q 002349 675 FMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSK 754 (933)
Q Consensus 675 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~ 754 (933)
||+||+|.+++.. .....+++.++..++.||+.||+|||++ +||||||||+|||++.++.+||+|||+|+.+....
T Consensus 104 y~~gg~L~~~i~~-~~~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 104 YCEGGDLFKRINA-QKGVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp CCTTCBHHHHHHH-TTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred CCCCCcHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccccceeecCCc
Confidence 9999999999963 2345689999999999999999999966 99999999999999999999999999998764221
Q ss_pred CceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccccC
Q 002349 755 SYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKD 834 (933)
Q Consensus 755 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (933)
......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+............. .. +....
T Consensus 180 -~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~--~~-----~~~~~---- 247 (350)
T 4b9d_A 180 -ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISG--SF-----PPVSL---- 247 (350)
T ss_dssp -HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHT--CC-----CCCCT----
T ss_pred -ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcC--CC-----CCCCc----
Confidence 2234468999999999999999999999999999999999999999876554443332221 11 11111
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 835 LGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 835 ~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+.++.+++.+||+.||++|||++|++++
T Consensus 248 -~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 248 -HYSYDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp -TSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred -cCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 123578899999999999999999999863
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.3e-50 Score=476.17 Aligned_cols=440 Identities=20% Similarity=0.201 Sum_probs=394.5
Q ss_pred CcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhh
Q 002349 68 FTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLIL 147 (933)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (933)
.++..|+|++|.+++..+..|.++++|++|+|++|++++..|..|+++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46889999999999888889999999999999999999877889999999999999999999888889999999999999
Q ss_pred cccCccCCCCcccccCCCCceeeeecCCCCC-CcccccccCCCCcEEeccCccccCccCcCCcCCCCC----cEEccccc
Q 002349 148 KNNQLIGPIPSTLSQLPNLKVFGLRGNNLVG-TLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSF----QVLDLSYN 222 (933)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~L~~N 222 (933)
++|++++..+..++++++|++|+|++|.+.+ .+|..|+++++|++|++++|.+++..|..++.+++| +.|++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999997666679999999999999999987 478999999999999999999998888889999998 89999999
Q ss_pred cccCcCCCCccccccceEecccc---------------------------------------------------------
Q 002349 223 QLSGEIPFNIGFLQIATLSLQGN--------------------------------------------------------- 245 (933)
Q Consensus 223 ~l~~~~p~~~~~~~L~~L~L~~n--------------------------------------------------------- 245 (933)
.+++..|..+...+|++|++++|
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 99988887777667888887776
Q ss_pred -ccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCC
Q 002349 246 -QLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIP 324 (933)
Q Consensus 246 -~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 324 (933)
.+.+..|..+..+++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCccccccc
Confidence 445566777888899999999999998 577788888 9999999999998 5554 478899999999999987665
Q ss_pred ccccccccccccccccccCCCCC--CCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCc-ccccc
Q 002349 325 PALGKLTDLFDLNVANNHLEGPI--PDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIP-VELSR 401 (933)
Q Consensus 325 ~~l~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~ 401 (933)
. ..+++|+.|++++|++.+.. +..+..+++|++|++++|++.+..+. |..+++|++|++++|.+.+..+ ..+..
T Consensus 343 ~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 343 E--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp C--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred c--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc
Confidence 5 78899999999999998654 66788999999999999999965444 9999999999999999998766 57889
Q ss_pred ccccceeeccCCccCCCCCCCCCCccccccccccCcccc-cccccccccccccceEEccCCccccccchhhcccccccee
Q 002349 402 IGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLT-GFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSL 480 (933)
Q Consensus 402 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 480 (933)
+++|++|++++|.+++..|..|..+++|+.|+|++|+++ +.+|..|.++++|++|+|++|++++..|..+..+++|++|
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 999999999999999999999999999999999999998 6899999999999999999999999999999999999999
Q ss_pred eecCCCCcCcccc-hhhccccc-eeecCCCCCCCccc
Q 002349 481 RLDYNNLSGDVMS-LINCLSLS-VLFIGNPGLCGYWL 515 (933)
Q Consensus 481 ~l~~N~l~~~~~~-~~~~~~~~-~~~~~N~~~C~~~l 515 (933)
++++|++++.++. +.++..+. +.+.+||+.|+|+.
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999998775 45666776 77899999999864
No 17
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=1.7e-50 Score=438.26 Aligned_cols=252 Identities=25% Similarity=0.286 Sum_probs=206.0
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEec
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFM 676 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~ 676 (933)
+.|...++||+|+||+||+|+++ +++.||||+++.... ..+|++++++++|||||++++++.+++..|+|||||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 132 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELL 132 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEecc
Confidence 56788889999999999999976 488999999975432 247999999999999999999999999999999999
Q ss_pred CCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCC-CeEEeecccccccccCCC
Q 002349 677 ENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDF-EAHLTDFGIAKSLCVSKS 755 (933)
Q Consensus 677 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~-~~kl~DfGla~~~~~~~~ 755 (933)
+||+|.++++ ..+.+++.++..++.|++.||+|||++ +||||||||+|||++.++ .+||+|||+|+.+.....
T Consensus 133 ~gg~L~~~l~---~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~ 206 (336)
T 4g3f_A 133 EGGSLGQLIK---QMGCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGL 206 (336)
T ss_dssp TTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC-----
T ss_pred CCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCc
Confidence 9999999995 456799999999999999999999965 999999999999999987 699999999987643321
Q ss_pred c----eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccc
Q 002349 756 Y----TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISAT 831 (933)
Q Consensus 756 ~----~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (933)
. .....+||+.|||||++.+..|+.++||||+||++|||+||+.||.+................ ...+++
T Consensus 207 ~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~-~~~~~~----- 280 (336)
T 4g3f_A 207 GKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPP-IREIPP----- 280 (336)
T ss_dssp -------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCG-GGGSCT-----
T ss_pred ccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCCC-chhcCc-----
Confidence 1 223467999999999999999999999999999999999999999865443333222211111 111111
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 832 CKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 832 ~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
..+..+.+++.+||+.||++|||++|+++++....
T Consensus 281 ----~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l 315 (336)
T 4g3f_A 281 ----SCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKAL 315 (336)
T ss_dssp ----TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ----cCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHH
Confidence 12457888999999999999999999999886654
No 18
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=2.1e-50 Score=432.06 Aligned_cols=247 Identities=23% Similarity=0.263 Sum_probs=210.3
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
++|+..+.||+|+||+||+|+++ +++.||||++.... ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 57999999999999999999976 58899999996532 334677999999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
|||+||+|.+++. ..+.+++.++..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+|+.+...
T Consensus 112 Ey~~gG~L~~~i~---~~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 112 SYAKNGELLKYIR---KIGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp CCCTTEEHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ecCCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecCCC
Confidence 9999999999995 456799999999999999999999966 9999999999999999999999999999987533
Q ss_pred C-CceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccc
Q 002349 754 K-SYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 754 ~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
. .......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+................+ +..
T Consensus 186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~----p~~----- 256 (311)
T 4aw0_A 186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYDF----PEK----- 256 (311)
T ss_dssp TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCC----CTT-----
T ss_pred CCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCC----Ccc-----
Confidence 2 233456789999999999999999999999999999999999999998765544433332222111 111
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRPTMHEVS 863 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RPt~~evl 863 (933)
.+.++.+++.+|++.||++|||++|+.
T Consensus 257 ----~s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 257 ----FFPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp ----CCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred ----cCHHHHHHHHHHccCCHhHCcChHHHc
Confidence 124678899999999999999999864
No 19
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=8.9e-50 Score=425.58 Aligned_cols=247 Identities=23% Similarity=0.329 Sum_probs=200.3
Q ss_pred CcceeeecccceeEEEEEEcC-CceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEec----CCccEEEE
Q 002349 601 SEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLS----SSGNLLFY 673 (933)
Q Consensus 601 ~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~----~~~~~lv~ 673 (933)
+..+.||+|+||+||+|.+.. ++.||+|++.... ....+.|.+|++++++++|||||+++++|.+ +...++||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 556689999999999999764 7889999996542 3446779999999999999999999999865 34579999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCC-CCCeEEeeccccccccc
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDK-DFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~-~~~~kl~DfGla~~~~~ 752 (933)
|||++|+|.++++ ..+.+++..+..++.||+.||+|||++ .++||||||||+|||++. ++.+||+|||+|+....
T Consensus 109 Ey~~gg~L~~~l~---~~~~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~ 184 (290)
T 3fpq_A 109 ELMTSGTLKTYLK---RFKVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA 184 (290)
T ss_dssp ECCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred eCCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEecccChhheeEECCCCCEEEEeCcCCEeCCC
Confidence 9999999999995 456799999999999999999999976 233999999999999985 79999999999986432
Q ss_pred CCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccc
Q 002349 753 SKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 753 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
......+||+.|||||++.+ .|+.++|||||||++|||+||+.||.+............. .... +.+...
T Consensus 185 ---~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~-~~~~----~~~~~~- 254 (290)
T 3fpq_A 185 ---SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTS-GVKP----ASFDKV- 254 (290)
T ss_dssp ---TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTT-TCCC----GGGGGC-
T ss_pred ---CccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHc-CCCC----CCCCcc-
Confidence 23445789999999999875 5999999999999999999999999866555444332221 1111 111111
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
.+.++.+++.+||+.||++|||++|++++
T Consensus 255 ----~~~~~~~li~~~L~~dP~~R~s~~e~l~H 283 (290)
T 3fpq_A 255 ----AIPEVKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp ----CCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred ----CCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 12467889999999999999999999875
No 20
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=2e-49 Score=418.93 Aligned_cols=246 Identities=19% Similarity=0.282 Sum_probs=193.8
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
++|+..+.||+|+||+||+|+++ +++.||||++.... ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 68999999999999999999975 58999999996542 334567999999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
||+ +|+|.+++. ..+++++.++..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+|+.....
T Consensus 93 Ey~-~g~L~~~l~---~~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~ 165 (275)
T 3hyh_A 93 EYA-GNELFDYIV---QRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG 165 (275)
T ss_dssp ECC-CEEHHHHHH---HSCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC------
T ss_pred eCC-CCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeecCCC
Confidence 999 679999984 456899999999999999999999976 9999999999999999999999999999875332
Q ss_pred CCceeeeecccccccCccccccCCC-CcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYARTSRL-TEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
......+||+.|||||++.+..+ ++++||||+||++|||+||+.||.+................ ++..
T Consensus 166 --~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~~~--------~p~~- 234 (275)
T 3hyh_A 166 --NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYT--------LPKF- 234 (275)
T ss_dssp -----------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCC--------CCTT-
T ss_pred --CccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCC--------CCCC-
Confidence 23345689999999999998876 58999999999999999999999876544333222211111 1111
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
.+..+.+++.+|++.||++|||++|++++
T Consensus 235 ----~s~~~~~li~~~L~~dP~~R~s~~eil~h 263 (275)
T 3hyh_A 235 ----LSPGAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp ----SCHHHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred ----CCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence 13567889999999999999999999974
No 21
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=1.3e-49 Score=443.24 Aligned_cols=250 Identities=24% Similarity=0.343 Sum_probs=213.2
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEec
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFM 676 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~ 676 (933)
+.|+..+.||+|+||+||+|+++ +|+.||||++........+.+.+|+++|++++|||||+++++|.+++..|+|||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence 56999999999999999999976 48999999997666556677899999999999999999999999999999999999
Q ss_pred CCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCCc
Q 002349 677 ENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSY 756 (933)
Q Consensus 677 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~ 756 (933)
+||+|.++++ ...+++.++..++.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+.+.... .
T Consensus 231 ~gG~L~~~i~----~~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~-~ 302 (423)
T 4fie_A 231 EGGALTDIVT----HTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV-P 302 (423)
T ss_dssp TTEEHHHHHH----HSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSSC-C
T ss_pred CCCcHHHHHh----ccCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCCCC-c
Confidence 9999999995 34699999999999999999999966 99999999999999999999999999998764332 2
Q ss_pred eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccccCHH
Q 002349 757 TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDLG 836 (933)
Q Consensus 757 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (933)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+......+....... .+.+... ..
T Consensus 303 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~-------~~~~~~~---~~ 372 (423)
T 4fie_A 303 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNL-------PPRLKNL---HK 372 (423)
T ss_dssp CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSC-------CCCCSCT---TS
T ss_pred cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCC-------CCCCccc---cc
Confidence 3445689999999999999999999999999999999999999998776655543332211 1111111 01
Q ss_pred HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 837 AVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 837 ~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
.+..+.+++.+||+.||++|||++|++++
T Consensus 373 ~s~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 373 VSPSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp SCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 23578899999999999999999999875
No 22
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.5e-49 Score=430.47 Aligned_cols=268 Identities=23% Similarity=0.316 Sum_probs=205.1
Q ss_pred hccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCC----ccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSS----GNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----~~~lv~ 673 (933)
++|...+.||+|+||+||+|+++ |+.||||++..... ....++.|+..+.+++|||||++++++.+++ ..++||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEEC-CEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence 46778899999999999999984 68999999965432 2223455677778899999999999997654 468999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCCeeeccCCCCceEeCCCCCeEEeeccccc
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDC-----SPRIIHRDVKSSNILLDKDFEAHLTDFGIAK 748 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~Dikp~NIll~~~~~~kl~DfGla~ 748 (933)
|||++|+|.++++ ..+++++.+.+++.|+++||+|||+++ .++||||||||+|||++.++.+||+|||+|+
T Consensus 81 Ey~~~gsL~~~l~----~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~ 156 (303)
T 3hmm_A 81 DYHEHGSLFDYLN----RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 156 (303)
T ss_dssp ECCTTCBHHHHHH----HCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred cCCCCCcHHHHHH----hCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCc
Confidence 9999999999995 346899999999999999999999641 3489999999999999999999999999998
Q ss_pred ccccCCCc---eeeeecccccccCccccccC------CCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHH-------
Q 002349 749 SLCVSKSY---TSTYIMGTIGYIDPEYARTS------RLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLIL------- 812 (933)
Q Consensus 749 ~~~~~~~~---~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~------- 812 (933)
........ .....+||+.|||||++.+. .++.++|||||||++|||+||+.||...........
T Consensus 157 ~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~ 236 (303)
T 3hmm_A 157 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP 236 (303)
T ss_dssp EEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSC
T ss_pred cccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccc
Confidence 76443322 22345799999999999764 367899999999999999999887753221110000
Q ss_pred --hhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 813 --SKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 813 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
............+|.++......+.+..+.+++.+||+.||++||||+||++.|+.+..
T Consensus 237 ~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~ 297 (303)
T 3hmm_A 237 SVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp CHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHH
Confidence 00000011223344454444455677889999999999999999999999999987643
No 23
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=1.7e-49 Score=436.19 Aligned_cols=268 Identities=24% Similarity=0.334 Sum_probs=217.3
Q ss_pred HHHHHHHhhccCcceeeecccceeEEEEEEcC------CceEEEEEecccC-chhHHHHHHHHHHHhcCCC-Cceeeeee
Q 002349 590 YEDIMRMTENLSEKYIIGYGASSTVYKCVLKN------CKPVAIKRLYSHY-PQCLKEFETELETVGSIKH-RNLVSLQG 661 (933)
Q Consensus 590 ~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h-~niv~~~~ 661 (933)
.++++...++|+..+.||+|+||+||+|.+.+ ++.||||++.... ....+.|.+|++++++++| ||||+++|
T Consensus 56 ~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g 135 (353)
T 4ase_A 56 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG 135 (353)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred CcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEE
Confidence 34455556899999999999999999999754 3579999997654 3345779999999999965 89999999
Q ss_pred EEecC-CccEEEEEecCCCCHHHHhcCCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCC
Q 002349 662 YSLSS-SGNLLFYDFMENGSLWDILHGPT-------------KKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVK 727 (933)
Q Consensus 662 ~~~~~-~~~~lv~e~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik 727 (933)
+|... +..++|||||++|+|.++|+... ....+++.++..++.|||+||+|||++ +|||||||
T Consensus 136 ~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDLK 212 (353)
T 4ase_A 136 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLA 212 (353)
T ss_dssp EECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCS
T ss_pred EEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecCccC
Confidence 99764 56899999999999999996321 134589999999999999999999965 99999999
Q ss_pred CCceEeCCCCCeEEeecccccccccCCCc-eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCc
Q 002349 728 SSNILLDKDFEAHLTDFGIAKSLCVSKSY-TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNEC 805 (933)
Q Consensus 728 p~NIll~~~~~~kl~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~ 805 (933)
|+|||+++++.+||+|||+|+.+...... ......||+.|||||++.+..|+.++|||||||++|||+| |+.||.+..
T Consensus 213 ~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~ 292 (353)
T 4ase_A 213 ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 292 (353)
T ss_dssp GGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred ccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCC
Confidence 99999999999999999999876544333 3345679999999999999999999999999999999998 899998654
Q ss_pred chhHHHHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 806 NLHHLILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
........... + ..+..+.. ++.++.+++.+||+.||++|||++||+++|+.+..
T Consensus 293 ~~~~~~~~i~~-g-----~~~~~p~~-----~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq 347 (353)
T 4ase_A 293 IDEEFCRRLKE-G-----TRMRAPDY-----TTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 347 (353)
T ss_dssp CSHHHHHHHHH-T-----CCCCCCTT-----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-C-----CCCCCCcc-----CCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHH
Confidence 43333222111 1 11112221 24578899999999999999999999999987643
No 24
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=1.9e-49 Score=424.90 Aligned_cols=248 Identities=24% Similarity=0.291 Sum_probs=200.3
Q ss_pred hccCcceeeecccceeEEEEEEc----CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK----NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLL 671 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~----~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 671 (933)
++|+..+.||+|+||+||+|+.. .++.||||++.... .....++.+|++++++++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 57999999999999999999863 36789999996542 2234568899999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 672 FYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
|||||+||+|.+++. ..+.+++.++..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+|+...
T Consensus 104 vmEy~~gg~L~~~l~---~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~ 177 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLS---KEVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESI 177 (304)
T ss_dssp EECCCTTCEEHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC--
T ss_pred EEEcCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecccccceecc
Confidence 999999999999995 456799999999999999999999966 99999999999999999999999999998653
Q ss_pred cCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccc
Q 002349 752 VSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISAT 831 (933)
Q Consensus 752 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (933)
... ......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+....+............ +..
T Consensus 178 ~~~-~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~--------p~~ 248 (304)
T 3ubd_A 178 DHE-KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGM--------PQF 248 (304)
T ss_dssp ----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCC--------CTT
T ss_pred CCC-ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHHHHHHHHcCCCCC--------CCc
Confidence 322 22345689999999999999999999999999999999999999998766554443332221111 111
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCH-----HHHHHH
Q 002349 832 CKDLGAVKKVFQLALLCSKRQPTDRPTM-----HEVSRV 865 (933)
Q Consensus 832 ~~~~~~~~~l~~li~~cl~~dP~~RPt~-----~evl~~ 865 (933)
.+.++.+++.+||+.||++|||+ +|++++
T Consensus 249 -----~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~H 282 (304)
T 3ubd_A 249 -----LSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRH 282 (304)
T ss_dssp -----SCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTS
T ss_pred -----CCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHcC
Confidence 23567889999999999999984 566653
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.3e-49 Score=467.63 Aligned_cols=447 Identities=20% Similarity=0.251 Sum_probs=352.0
Q ss_pred CCCccceEecCC-----------CCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecc
Q 002349 55 YCVWRGITCDNV-----------TFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDL 123 (933)
Q Consensus 55 ~c~w~gv~C~~~-----------~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 123 (933)
.|.|.|+ |+.. ...++.|+|++|.+++..+..+.++++|++|+|++|++++..|..|+++++|++|||
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 5999998 8642 137899999999999888899999999999999999999888899999999999999
Q ss_pred cccccCCCCCcccccccchhhhhhcccCccC-CCCcccccCCCCceeeeecCCCCCCcc-cccccCCCCcEEeccCcccc
Q 002349 124 SFNELYGDIPFSISKLKQLEFLILKNNQLIG-PIPSTLSQLPNLKVFGLRGNNLVGTLS-PDMCQLSGLWYFDVRNNSLT 201 (933)
Q Consensus 124 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 201 (933)
++|.+++..|..|+++++|++|+|++|.+++ .+|..++++++|++|+|++|++.+.+| ..|.++++|++|++++|.++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 9999998777779999999999999999987 467889999999999999999665665 57999999999999999999
Q ss_pred CccCcCCcCCCCCcEEccccccccCcCCCCc--cccccceEecccccccccc--C-cc----------------------
Q 002349 202 GSIPQNIGNCTSFQVLDLSYNQLSGEIPFNI--GFLQIATLSLQGNQLTGKI--P-SV---------------------- 254 (933)
Q Consensus 202 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~~L~~L~L~~n~l~~~~--p-~~---------------------- 254 (933)
+.+|..++++++|++|++++|.+. .+|..+ ...+|++|++++|++++.. | ..
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred ccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence 999999988888888888777765 233222 1346777777777776532 1 11
Q ss_pred ------ccccccccEEeccCCcCcCCC------CCCCCCCCCccEEEeeCCccCCC-----CCCccccCCcceEeeeccc
Q 002349 255 ------IGLMQALAVLDLSCNMLSGPI------PPILGNLSYTEKLYLHSNKLTGH-----IPPELGNMTKLHYLELNDN 317 (933)
Q Consensus 255 ------~~~l~~L~~L~Ls~N~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~-----~p~~l~~l~~L~~L~L~~N 317 (933)
+..+++|+.|++++|.+.+.. ...+..+++|+.|++.++.+... ++..+...++|+.|++++|
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence 223344444555554443321 12334455566666666554421 1111233467899999999
Q ss_pred cccccCCccc-cccccccccccccccCCCCC---CCCcccCCCCCceeccCcccCCCCC--cccccccccceecCCcccc
Q 002349 318 QLTGHIPPAL-GKLTDLFDLNVANNHLEGPI---PDNLSSCTNLNSLNVHGNKLNGTIP--PAFQRLESMTYLNLSLNNI 391 (933)
Q Consensus 318 ~l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~---p~~l~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l 391 (933)
+++ .+|..+ ..+++|+.|++++|++.+.+ +..+..+++|+.|++++|++++..+ ..+..+++|++|++++|++
T Consensus 321 ~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399 (549)
T ss_dssp CCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred ccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence 988 566665 57999999999999998765 3457888999999999999986533 4688999999999999999
Q ss_pred cCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhh
Q 002349 392 RGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEEL 471 (933)
Q Consensus 392 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 471 (933)
+ .+|..+..+++|++|+|++|.++ .+|..+. ++|+.|+|++|+|++.+ .++++|++|+|++|+|+ .+|. .
T Consensus 400 ~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~ 469 (549)
T 2z81_A 400 H-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-A 469 (549)
T ss_dssp C-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-G
T ss_pred c-cCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-c
Confidence 9 67888888999999999999998 4554442 58999999999999753 57899999999999999 5665 5
Q ss_pred ccccccceeeecCCCCcCcccc-hhhccccc-eeecCCCCCCCcc
Q 002349 472 SQLQNMFSLRLDYNNLSGDVMS-LINCLSLS-VLFIGNPGLCGYW 514 (933)
Q Consensus 472 ~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~-~~~~~N~~~C~~~ 514 (933)
..+++|+.|+|++|++++.++. +..+..+. +.+.+|||.|+|+
T Consensus 470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 6899999999999999998876 56666776 7789999999986
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.8e-48 Score=465.22 Aligned_cols=418 Identities=21% Similarity=0.165 Sum_probs=356.1
Q ss_pred CcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhh
Q 002349 68 FTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLIL 147 (933)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (933)
.++..|+|++|.+++..|..|+++++|++|+|++|++++..|..|+++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 36789999999999888889999999999999999999888999999999999999999999877788999999999999
Q ss_pred cccCccC-CCCcccccCCCCceeeeecCCCCCCcccccccCCCCc----EEeccCccccCccCcCCcCCCCCcEEccccc
Q 002349 148 KNNQLIG-PIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLW----YFDVRNNSLTGSIPQNIGNCTSFQVLDLSYN 222 (933)
Q Consensus 148 ~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N 222 (933)
++|.+++ .+|..|+++++|++|+|++|++++..+..+..+++|+ +|++++|.+++..+..+... +|+.|++++|
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n 214 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGN 214 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCC
Confidence 9999986 6799999999999999999999988888787776655 78888888875444444333 6777777666
Q ss_pred cccC----------------------------------------------------------------------------
Q 002349 223 QLSG---------------------------------------------------------------------------- 226 (933)
Q Consensus 223 ~l~~---------------------------------------------------------------------------- 226 (933)
.+++
T Consensus 215 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 294 (606)
T 3vq2_A 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294 (606)
T ss_dssp CSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEES
T ss_pred ccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecC
Confidence 5431
Q ss_pred ----cCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCC--CC
Q 002349 227 ----EIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGH--IP 300 (933)
Q Consensus 227 ----~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p 300 (933)
.+|......+|++|++++|++ +.+| .+ .+++|+.|++++|...+.. .+..+++|++|++++|++++. .|
T Consensus 295 ~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~ 369 (606)
T 3vq2_A 295 VSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCS 369 (606)
T ss_dssp CCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECC
T ss_pred ccchhhhhccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchh
Confidence 122111122455666666666 3455 23 5666666666666433322 566788899999999999865 37
Q ss_pred CccccCCcceEeeeccccccccCCccccccccccccccccccCCCCCC-CCcccCCCCCceeccCcccCCCCCccccccc
Q 002349 301 PELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIP-DNLSSCTNLNSLNVHGNKLNGTIPPAFQRLE 379 (933)
Q Consensus 301 ~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 379 (933)
..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..| ..+..+++|+.|++++|++++..|..|..++
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 889999999999999999995 66899999999999999999998877 7899999999999999999999999999999
Q ss_pred ccceecCCcccccC-CCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEc
Q 002349 380 SMTYLNLSLNNIRG-PIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDL 458 (933)
Q Consensus 380 ~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 458 (933)
+|++|++++|.+++ .+|..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++|++|+|
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 99999999999997 47889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccchhhcccc-ccceeeecCCCCcCcccc
Q 002349 459 SHNHLTGVIPEELSQLQ-NMFSLRLDYNNLSGDVMS 493 (933)
Q Consensus 459 s~N~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~~~ 493 (933)
++|+++ .+|..+..++ +|+.|++++|+|.|..+.
T Consensus 529 ~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 529 SFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999 6777799997 599999999999997653
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.4e-47 Score=464.51 Aligned_cols=303 Identities=19% Similarity=0.233 Sum_probs=215.5
Q ss_pred CcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCCCCcc----------------------------------cc
Q 002349 190 LWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIG----------------------------------FL 235 (933)
Q Consensus 190 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~----------------------------------~~ 235 (933)
|++|++++|.+++..|..++.+++|++|++++|++++..|..+. ..
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 55555555555555555555556666666666655544332221 12
Q ss_pred ccceEeccccccccccCccccccccccEEeccCC----------------------------cCcCCCCCCCCCCCCccE
Q 002349 236 QIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCN----------------------------MLSGPIPPILGNLSYTEK 287 (933)
Q Consensus 236 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N----------------------------~l~~~~~~~~~~l~~L~~ 287 (933)
+|++|++++|++++..+..|..+++|++|++++| ++++..|..|..+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 3455555555555555544544444444444333 333333444555555555
Q ss_pred EEeeCCccCCCCC-CccccCCcceEeeeccccccccCCccccccccccccccccccCC--CCCCCCcccCCCCCceeccC
Q 002349 288 LYLHSNKLTGHIP-PELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLE--GPIPDNLSSCTNLNSLNVHG 364 (933)
Q Consensus 288 L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~l~~ 364 (933)
|+|++|.+++.+| ..+.++++|++|++++|++++..+..|..+++|+.|++++|.+. +..|..+..+++|+.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 5555555544333 34555555555555555555555555566666666666666654 46788899999999999999
Q ss_pred cccCCCCCcccccccccceecCCcccccCCCc--------cccccccccceeeccCCccCCCCCCCCCCccccccccccC
Q 002349 365 NKLNGTIPPAFQRLESMTYLNLSLNNIRGPIP--------VELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSR 436 (933)
Q Consensus 365 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 436 (933)
|++++..+..|.++++|++|+|++|++++..+ ..+..+++|+.|+|++|+++...+..|.++++|+.|+|++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence 99998888899999999999999999986422 2478899999999999999965556799999999999999
Q ss_pred cccccccccccccccccceEEccCCccccccchhhc-cccccceeeecCCCCcCccc
Q 002349 437 NQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELS-QLQNMFSLRLDYNNLSGDVM 492 (933)
Q Consensus 437 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~~~ 492 (933)
|+|++..+..|.++++|+.|+|++|+|++..|..+. .+++|+.|++++|+|.|..+
T Consensus 570 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 999988888899999999999999999999988888 89999999999999999865
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.8e-48 Score=471.93 Aligned_cols=409 Identities=19% Similarity=0.268 Sum_probs=354.4
Q ss_pred CCccEEEccCCcccccCCCCccCCCCCceecc-cccccCCCCCcccc---------------------------------
Q 002349 92 KDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDL-SFNELYGDIPFSIS--------------------------------- 137 (933)
Q Consensus 92 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L-s~n~l~~~~p~~~~--------------------------------- 137 (933)
.+++.|+|++|+++|.+|++|++|++|++||| ++|.++|..|....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999999999999999999999 99998877553311
Q ss_pred ------------------cccchhhhhhcc--cCccCCCCcccccCCCCceeeeecCCCCC-----------------Cc
Q 002349 138 ------------------KLKQLEFLILKN--NQLIGPIPSTLSQLPNLKVFGLRGNNLVG-----------------TL 180 (933)
Q Consensus 138 ------------------~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-----------------~~ 180 (933)
....++.+.+.. |++++ +|..|+++++|+.|+|++|++++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 122344455544 88998 89999999999999999999998 38
Q ss_pred ccccc--cCCCCcEEeccCccccCccCcCCcCCCCCcEEcccccc-ccC-cCCCCcccc--------ccceEeccccccc
Q 002349 181 SPDMC--QLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQ-LSG-EIPFNIGFL--------QIATLSLQGNQLT 248 (933)
Q Consensus 181 ~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~-l~~-~~p~~~~~~--------~L~~L~L~~n~l~ 248 (933)
|..++ ++++|++|+|++|.+.+.+|..++++++|++|+|++|+ +++ .+|..++.. +|++|+|++|+++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 99988 99999999999999999999999999999999999998 998 788765543 7999999999999
Q ss_pred cccCc--cccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCc-ceEeeeccccccccCCc
Q 002349 249 GKIPS--VIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTK-LHYLELNDNQLTGHIPP 325 (933)
Q Consensus 249 ~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~~~~ 325 (933)
.+|. .++.+++|+.|+|++|.++ .+| .|+++++|+.|+|++|+++ .+|..+.++++ |+.|+|++|+++ .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 7888 8999999999999999999 777 9999999999999999999 88999999999 999999999999 7888
Q ss_pred ccccccc--ccccccccccCCCCCCCCc---c--cCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccc
Q 002349 326 ALGKLTD--LFDLNVANNHLEGPIPDNL---S--SCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVE 398 (933)
Q Consensus 326 ~l~~l~~--L~~L~L~~N~l~~~~p~~l---~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 398 (933)
.+..++. |+.|++++|++.+.+|... . .+++|+.|++++|+++...+..+..+++|+.|+|++|+++ .+|..
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 715 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPEN 715 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence 8887765 9999999999998766433 2 3458999999999999544445568999999999999999 55554
Q ss_pred ccc--------ccccceeeccCCccCCCCCCCCC--CccccccccccCcccccccccccccccccceEEccC------Cc
Q 002349 399 LSR--------IGNLDTLDMSNNKISGSIPSPLG--DLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSH------NH 462 (933)
Q Consensus 399 ~~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~ 462 (933)
+.. +++|+.|+|++|+|+ .+|..+. .+++|+.|+|++|+|++ +|..+.++++|+.|+|++ |+
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred HhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccc
Confidence 433 339999999999999 7888887 99999999999999997 799999999999999977 88
Q ss_pred cccccchhhccccccceeeecCCCCcCcccchhhccccc-eeecCCCCCC
Q 002349 463 LTGVIPEELSQLQNMFSLRLDYNNLSGDVMSLINCLSLS-VLFIGNPGLC 511 (933)
Q Consensus 463 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~-~~~~~N~~~C 511 (933)
+.+.+|..+..+++|+.|+|++|++...+..+. ..+. +.+.+|++..
T Consensus 794 l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 794 ILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCE
T ss_pred ccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCc
Confidence 999999999999999999999999944444332 3555 6788998754
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-47 Score=476.13 Aligned_cols=419 Identities=21% Similarity=0.247 Sum_probs=370.8
Q ss_pred cEEEEEcCCCCcCccc-CCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcc--cccccchhhh
Q 002349 69 TVIALNLSGLNLDGEI-SPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFS--ISKLKQLEFL 145 (933)
Q Consensus 69 ~v~~l~l~~~~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L 145 (933)
.+..|+|++|+..+.+ |.+|+++++|++|+|++|++++..|..|+++++|++|+|++|.+++.+|.. |+++++|++|
T Consensus 49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L 128 (844)
T 3j0a_A 49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128 (844)
T ss_dssp SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEE
Confidence 5678999999888888 568999999999999999999988999999999999999999999877776 9999999999
Q ss_pred hhcccCccCCCC-cccccCCCCceeeeecCCCCCCcccccccC--CCCcEEeccCccccCccCcCCcCCCC------CcE
Q 002349 146 ILKNNQLIGPIP-STLSQLPNLKVFGLRGNNLVGTLSPDMCQL--SGLWYFDVRNNSLTGSIPQNIGNCTS------FQV 216 (933)
Q Consensus 146 ~L~~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~ 216 (933)
+|++|.+++..+ ..|+++++|++|+|++|.+++..+..+..+ ++|+.|++++|.+.+..|..++.+.+ |+.
T Consensus 129 ~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~ 208 (844)
T 3j0a_A 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208 (844)
T ss_dssp EEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSE
T ss_pred ECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeE
Confidence 999999998755 579999999999999999999999999888 89999999999999988888877766 999
Q ss_pred EccccccccCcCCCCcc---------------------------------------ccccceEeccccccccccCccccc
Q 002349 217 LDLSYNQLSGEIPFNIG---------------------------------------FLQIATLSLQGNQLTGKIPSVIGL 257 (933)
Q Consensus 217 L~L~~N~l~~~~p~~~~---------------------------------------~~~L~~L~L~~n~l~~~~p~~~~~ 257 (933)
|++++|++++.++..+. ..++++|+|++|.+++..+..|..
T Consensus 209 L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~ 288 (844)
T 3j0a_A 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288 (844)
T ss_dssp EBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS
T ss_pred EecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc
Confidence 99999988766654332 146889999999999988999999
Q ss_pred cccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccccccccccc
Q 002349 258 MQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLN 337 (933)
Q Consensus 258 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~ 337 (933)
+++|+.|+|++|.+++..+..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..+..|..+++|+.|+
T Consensus 289 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368 (844)
T ss_dssp CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEE
T ss_pred CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEE
Confidence 99999999999999988889999999999999999999988899999999999999999999988888899999999999
Q ss_pred cccccCCCCC------------------CC----------------------CcccCCCCCceeccCcccCCCCCc-ccc
Q 002349 338 VANNHLEGPI------------------PD----------------------NLSSCTNLNSLNVHGNKLNGTIPP-AFQ 376 (933)
Q Consensus 338 L~~N~l~~~~------------------p~----------------------~l~~l~~L~~L~l~~N~l~~~~~~-~~~ 376 (933)
+++|.+++.. |. .+..+++|+.|++++|++++..+. .+.
T Consensus 369 Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 448 (844)
T 3j0a_A 369 LRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448 (844)
T ss_dssp EETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC
T ss_pred CCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccc
Confidence 9998876421 11 123678999999999999976554 466
Q ss_pred cccccceecCCccccc-----CCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCccccccccccccccc
Q 002349 377 RLESMTYLNLSLNNIR-----GPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLR 451 (933)
Q Consensus 377 ~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 451 (933)
.+++|++|+|++|.++ +..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..|..+. +
T Consensus 449 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~ 526 (844)
T 3j0a_A 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--A 526 (844)
T ss_dssp SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--S
T ss_pred cCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--c
Confidence 7899999999999997 44556788999999999999999999999999999999999999999988888776 8
Q ss_pred ccceEEccCCccccccchhhccccccceeeecCCCCcCccc
Q 002349 452 SVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVM 492 (933)
Q Consensus 452 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 492 (933)
+|+.|||++|+|++.+|..+ .+|+.|++++|++.|..+
T Consensus 527 ~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 527 NLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred cccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 99999999999999999775 478899999999999765
No 30
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=2.3e-47 Score=411.12 Aligned_cols=252 Identities=20% Similarity=0.295 Sum_probs=191.5
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCC-------
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSS------- 667 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~------- 667 (933)
.++|+..+.||+|+||+||+|+++ +++.||||++.... ....+.+.+|++++++++|||||++++++.+.+
T Consensus 4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~ 83 (299)
T 4g31_A 4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP 83 (299)
T ss_dssp HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence 357999999999999999999976 57899999997544 334567899999999999999999999986543
Q ss_pred -----ccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEe
Q 002349 668 -----GNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLT 742 (933)
Q Consensus 668 -----~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~ 742 (933)
..|+|||||++|+|.+++.........++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+
T Consensus 84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vKl~ 160 (299)
T 4g31_A 84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVG 160 (299)
T ss_dssp ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEEC
T ss_pred cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEEEc
Confidence 3689999999999999997533334567778899999999999999966 99999999999999999999999
Q ss_pred ecccccccccCCCc-----------eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHH
Q 002349 743 DFGIAKSLCVSKSY-----------TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLI 811 (933)
Q Consensus 743 DfGla~~~~~~~~~-----------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~ 811 (933)
|||+|+.+...... .....+||+.|||||++.+..|+.++||||+||++|||++ ||.+..+.....
T Consensus 161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~~~~~ 237 (299)
T 4g31_A 161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERVRTL 237 (299)
T ss_dssp CCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHH
T ss_pred cCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHHHHHH
Confidence 99999876432211 1234579999999999999999999999999999999996 776433221111
Q ss_pred HhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 812 LSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
. ...... .++... .......+++.+||+.||++|||+.|++++
T Consensus 238 ~-~~~~~~----~p~~~~------~~~~~~~~li~~~L~~dP~~Rps~~eil~h 280 (299)
T 4g31_A 238 T-DVRNLK----FPPLFT------QKYPCEYVMVQDMLSPSPMERPEAINIIEN 280 (299)
T ss_dssp H-HHHTTC----CCHHHH------HHCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred H-HHhcCC----CCCCCc------ccCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 1 111111 111111 122456789999999999999999999874
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.8e-48 Score=453.96 Aligned_cols=426 Identities=18% Similarity=0.174 Sum_probs=293.6
Q ss_pred EEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhcccCc
Q 002349 73 LNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQL 152 (933)
Q Consensus 73 l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 152 (933)
+|+++++++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|++
T Consensus 5 l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 5 VDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp EECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred EecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 455555555 3444443 4555555555555544444555555555555555555544455555555555555555555
Q ss_pred cCCCCcccccCCCCceeeeecCCCCC-CcccccccCCCCcEEeccCccccCccCcCCcCCCCC--cEEccccccc--cCc
Q 002349 153 IGPIPSTLSQLPNLKVFGLRGNNLVG-TLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSF--QVLDLSYNQL--SGE 227 (933)
Q Consensus 153 ~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~~N~l--~~~ 227 (933)
+ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|++++|.+++ ..+..+++| ++|++++|++ .+.
T Consensus 82 ~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 82 V-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp C-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred e-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccc
Confidence 5 23433 45555555555555554 244555555555555555555543 223444444 5555555555 444
Q ss_pred CCCCccc---------------------------cccceEeccccc-------cccccCccccccccccEEeccCCcCcC
Q 002349 228 IPFNIGF---------------------------LQIATLSLQGNQ-------LTGKIPSVIGLMQALAVLDLSCNMLSG 273 (933)
Q Consensus 228 ~p~~~~~---------------------------~~L~~L~L~~n~-------l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 273 (933)
.|..+.. .+|+.|++++|. +.+.+| .++.+++|+.|++++|.+++
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCH
Confidence 4443332 345666666665 555444 55666666667666666654
Q ss_pred CCCCCCC---CCCCccEEEeeCCccCCCCCCcc-----ccCCcceEeeeccccccccCC-cccccc---ccccccccccc
Q 002349 274 PIPPILG---NLSYTEKLYLHSNKLTGHIPPEL-----GNMTKLHYLELNDNQLTGHIP-PALGKL---TDLFDLNVANN 341 (933)
Q Consensus 274 ~~~~~~~---~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~~~-~~l~~l---~~L~~L~L~~N 341 (933)
..+..+. ..++|++|++++|+++|.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCC
Confidence 2211111 13478888888888888888887 8888888888888888 344 455554 67889999999
Q ss_pred cCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccC--CCccccccccccceeeccCCccCCCC
Q 002349 342 HLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRG--PIPVELSRIGNLDTLDMSNNKISGSI 419 (933)
Q Consensus 342 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~ 419 (933)
++.... .+..+++|++|++++|++++.+|..+..+++|++|++++|++++ .+|..+..+++|++|+|++|.+++.+
T Consensus 313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 313 RMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred cccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence 886432 23688999999999999999899999999999999999999996 55677999999999999999999855
Q ss_pred CC-CCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcccc-hhhc
Q 002349 420 PS-PLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMS-LINC 497 (933)
Q Consensus 420 p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~ 497 (933)
|. .+..+++|+.|++++|++++..|..+. ++|+.|+|++|+++ .+|..+..+++|+.|++++|+++..++. +..+
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 467 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRL 467 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccC
Confidence 65 588899999999999999988887775 79999999999999 7888888999999999999999987665 5566
Q ss_pred cccc-eeecCCCCCCCccc
Q 002349 498 LSLS-VLFIGNPGLCGYWL 515 (933)
Q Consensus 498 ~~~~-~~~~~N~~~C~~~l 515 (933)
..+. +.+.+||+.|+|++
T Consensus 468 ~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 468 TSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TTCCEEECCSSCBCCCHHH
T ss_pred CcccEEECcCCCCcccCCc
Confidence 6666 77899999999865
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-48 Score=467.23 Aligned_cols=433 Identities=18% Similarity=0.253 Sum_probs=313.8
Q ss_pred cEEEEEcCCCCc------Cc------ccCCCCCCCCCccEEEccCCcccccCCCCccCC-------------------CC
Q 002349 69 TVIALNLSGLNL------DG------EISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDC-------------------SS 117 (933)
Q Consensus 69 ~v~~l~l~~~~l------~~------~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-------------------~~ 117 (933)
+...|+|++|.+ .| .+|+.. +..|+ +++++|.+.+.+|..++.+ ..
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 182 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCC
T ss_pred cceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccc
Confidence 567899999976 23 333322 44556 6777776666666555421 12
Q ss_pred Cceeccc--ccccCCCCCcccccccchhhhhhcccCccCC-----------------CCcccc--cCCCCceeeeecCCC
Q 002349 118 LKSLDLS--FNELYGDIPFSISKLKQLEFLILKNNQLIGP-----------------IPSTLS--QLPNLKVFGLRGNNL 176 (933)
Q Consensus 118 L~~L~Ls--~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~L~~N~l 176 (933)
++.+.+. .|+++| +|.+|+++++|++|+|++|.+++. +|..++ ++++|++|+|++|++
T Consensus 183 l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l 261 (636)
T 4eco_A 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261 (636)
T ss_dssp CCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT
T ss_pred hhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC
Confidence 2222222 567776 777777777777777777777765 777777 777777777777777
Q ss_pred CCCcccccccCCCCcEEeccCcc-ccC-ccCcCCcCC------CCCcEEccccccccCcCCC--Cccc-cccceEecccc
Q 002349 177 VGTLSPDMCQLSGLWYFDVRNNS-LTG-SIPQNIGNC------TSFQVLDLSYNQLSGEIPF--NIGF-LQIATLSLQGN 245 (933)
Q Consensus 177 ~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~L~~N~l~~~~p~--~~~~-~~L~~L~L~~n 245 (933)
.+.+|..|+++++|++|++++|+ ++| .+|..++++ ++|++|+|++|+++ .+|. .++. .+|++|+|++|
T Consensus 262 ~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence 77777777777777777777777 777 677777665 77777777777777 6666 4443 36777777777
Q ss_pred ccccccCccccccccccEEeccCCcCcCCCCCCCCCCCC-ccEEEeeCCccCCCCCCccccCC--cceEeeecccccccc
Q 002349 246 QLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSY-TEKLYLHSNKLTGHIPPELGNMT--KLHYLELNDNQLTGH 322 (933)
Q Consensus 246 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~ 322 (933)
+++|.+| .++.+++|++|+|++|+++ .+|..+.++++ |++|+|++|+++ .+|..+..++ +|++|++++|++++.
T Consensus 341 ~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 341 QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp CCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred cCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCc
Confidence 7777777 7777888888888888887 66777778877 888888888887 6777776654 788888888888877
Q ss_pred CCcccc-------ccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCccccccc-------ccceecCCc
Q 002349 323 IPPALG-------KLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLE-------SMTYLNLSL 388 (933)
Q Consensus 323 ~~~~l~-------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~-------~L~~L~L~~ 388 (933)
+|..+. .+++|+.|++++|+++...+..+..+++|+.|++++|+++...+..+.... +|++|+|++
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred chhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcC
Confidence 777777 677888888888888743333345578888888888888843333444332 888888888
Q ss_pred ccccCCCccccc--cccccceeeccCCccCCCCCCCCCCccccccccc------cCcccccccccccccccccceEEccC
Q 002349 389 NNIRGPIPVELS--RIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNL------SRNQLTGFIPGEFGNLRSVMEIDLSH 460 (933)
Q Consensus 389 N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~ 460 (933)
|+++ .+|..+. .+++|+.|+|++|+|++ +|..+..+++|+.|+| ++|++.+.+|..|.++++|++|+|++
T Consensus 498 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 498 NKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575 (636)
T ss_dssp SCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred CcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence 8888 6677765 88888888888888886 7888888888888888 56888999999999999999999999
Q ss_pred CccccccchhhccccccceeeecCCCCcCcccch--hhccc--cceeecCCCCCCCcc
Q 002349 461 NHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSL--INCLS--LSVLFIGNPGLCGYW 514 (933)
Q Consensus 461 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~--~~~~~--~~~~~~~N~~~C~~~ 514 (933)
|++ +.+|..+. ++|+.|+|++|++.+..... ..... ....+..+...|+|+
T Consensus 576 N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 576 NDI-RKVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp SCC-CBCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred CcC-CccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence 999 57887766 89999999999988754321 11111 123445555666775
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.4e-47 Score=450.19 Aligned_cols=417 Identities=21% Similarity=0.257 Sum_probs=375.7
Q ss_pred cEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhc
Q 002349 69 TVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILK 148 (933)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 148 (933)
.+..|+|++|.+++..+..|+++++|++|+|++|++++..|..|+++++|++|+|++|.+++..+..|+++++|++|+|+
T Consensus 53 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 132 (570)
T 2z63_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132 (570)
T ss_dssp SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECC
T ss_pred CceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecC
Confidence 57899999999998888899999999999999999998888899999999999999999997666679999999999999
Q ss_pred ccCccC-CCCcccccCCCCceeeeecCCCCCCcccccccCCCC----cEEeccCccccCccCcCCcCCCCCcEEccccc-
Q 002349 149 NNQLIG-PIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGL----WYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYN- 222 (933)
Q Consensus 149 ~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N- 222 (933)
+|.+++ .+|..|+++++|++|++++|++++..+..+..+++| +.|++++|.+++..|..+..+ +|+.|++++|
T Consensus 133 ~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~ 211 (570)
T 2z63_A 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNF 211 (570)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred CCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEeccccc
Confidence 999987 579999999999999999999998888889999998 899999999998888777766 7899988887
Q ss_pred ---------------------------------------------------------cccCcCCCCcc-ccccceEeccc
Q 002349 223 ---------------------------------------------------------QLSGEIPFNIG-FLQIATLSLQG 244 (933)
Q Consensus 223 ---------------------------------------------------------~l~~~~p~~~~-~~~L~~L~L~~ 244 (933)
.+.+.+|..+. ..+|++|++++
T Consensus 212 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 291 (570)
T 2z63_A 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291 (570)
T ss_dssp SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEES
T ss_pred ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecC
Confidence 23333444443 34799999999
Q ss_pred cccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccC-
Q 002349 245 NQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHI- 323 (933)
Q Consensus 245 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~- 323 (933)
|.++ .+|..+..+ +|+.|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++..
T Consensus 292 ~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~ 364 (570)
T 2z63_A 292 VTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGC 364 (570)
T ss_dssp CEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEE
T ss_pred ccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccc
Confidence 9998 578888888 9999999999998 4444 4788999999999999877665 78899999999999999654
Q ss_pred -CccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCC-cccccccccceecCCcccccCCCcccccc
Q 002349 324 -PPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIP-PAFQRLESMTYLNLSLNNIRGPIPVELSR 401 (933)
Q Consensus 324 -~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 401 (933)
+..+..+++|++|++++|.+.+..+. +..+++|+.|++++|++.+..+ ..|..+++|++|++++|.+.+..|..+..
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 443 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred ccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc
Confidence 67889999999999999999865554 9999999999999999998766 57899999999999999999999999999
Q ss_pred ccccceeeccCCccC-CCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhcccccccee
Q 002349 402 IGNLDTLDMSNNKIS-GSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSL 480 (933)
Q Consensus 402 l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 480 (933)
+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..+..+++|+.|
T Consensus 444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 999999999999998 5799999999999999999999999999999999999999999999999988999999999999
Q ss_pred eecCCCCcCcccch
Q 002349 481 RLDYNNLSGDVMSL 494 (933)
Q Consensus 481 ~l~~N~l~~~~~~~ 494 (933)
++++|+++|..+..
T Consensus 524 ~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 524 WLHTNPWDCSCPRI 537 (570)
T ss_dssp ECCSSCBCCCTTTT
T ss_pred EecCCcccCCCcch
Confidence 99999999988754
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.6e-45 Score=443.18 Aligned_cols=471 Identities=21% Similarity=0.196 Sum_probs=357.7
Q ss_pred CCCCCcCCCCCCC--CCCCCCc----cceEecCC---------CCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCc
Q 002349 39 DVDNVLYDWTDSP--SSDYCVW----RGITCDNV---------TFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNR 103 (933)
Q Consensus 39 ~~~~~l~~w~~~~--~~~~c~w----~gv~C~~~---------~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~ 103 (933)
|+...+++|+.+. ..++|.| ..|.|.+. +..++.|||++|.|++..+.+|.++++|++|||++|+
T Consensus 8 ~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~ 87 (635)
T 4g8a_A 8 DDDDKLAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE 87 (635)
T ss_dssp -----------------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCcchhhcccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc
Confidence 3344566665331 1234543 24678642 2468899999999998777889999999999999999
Q ss_pred ccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCC-ccc
Q 002349 104 LSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGT-LSP 182 (933)
Q Consensus 104 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~ 182 (933)
|++..|.+|++|++|++|+|++|+|++..|..|.++++|++|+|++|++++..+..|+++++|++|+|++|++.+. +|.
T Consensus 88 i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~ 167 (635)
T 4g8a_A 88 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 167 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch
Confidence 9977777899999999999999999976667899999999999999999987777899999999999999999864 577
Q ss_pred ccccCCCCcEEeccCccccCccCcCCcCCCCCc----EEccccccccCcCCCCccccccceEecccccccccc-------
Q 002349 183 DMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQ----VLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKI------- 251 (933)
Q Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~------- 251 (933)
.++.+++|++|++++|++++..|..+..+.+++ .++++.|.++...+..+....+..+++.+|..+..+
T Consensus 168 ~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~ 247 (635)
T 4g8a_A 168 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 247 (635)
T ss_dssp GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHT
T ss_pred hhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcC
Confidence 889999999999999999988888877666544 577888888765555444444455555544322100
Q ss_pred ---------------------------------------------------Cc----------------------ccccc
Q 002349 252 ---------------------------------------------------PS----------------------VIGLM 258 (933)
Q Consensus 252 ---------------------------------------------------p~----------------------~~~~l 258 (933)
+. .+...
T Consensus 248 l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 327 (635)
T 4g8a_A 248 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 327 (635)
T ss_dssp TTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSC
T ss_pred Ccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccc
Confidence 00 11222
Q ss_pred ccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccc--cCCcccccccccccc
Q 002349 259 QALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTG--HIPPALGKLTDLFDL 336 (933)
Q Consensus 259 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~~~~l~~l~~L~~L 336 (933)
.+|+.|++++|.+.+..+. .+..|+.+++..|.+... .....+++|+.|++++|.+.. ..+..+..+.+|+.|
T Consensus 328 ~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 402 (635)
T 4g8a_A 328 FGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYL 402 (635)
T ss_dssp CCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEE
T ss_pred hhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhh
Confidence 3344444444444433222 234455555555554422 234467788888888888753 345556677788888
Q ss_pred ccccccCCCCCCCCcccCCCCCceeccCcccCCCCC-cccccccccceecCCcccccCCCccccccccccceeeccCCcc
Q 002349 337 NVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIP-PAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKI 415 (933)
Q Consensus 337 ~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 415 (933)
++..|.+.. .+..+..+++|+.+++++|+.....+ ..|..+.+++.++++.|.+.+..+..+..++.|+.|+|++|.+
T Consensus 403 ~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~ 481 (635)
T 4g8a_A 403 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 481 (635)
T ss_dssp ECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred hcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccc
Confidence 888888763 45678889999999999888775554 5688999999999999999999999999999999999999975
Q ss_pred -CCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcccch
Q 002349 416 -SGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSL 494 (933)
Q Consensus 416 -~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 494 (933)
.+..|..|..+++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|++++.++..
T Consensus 482 ~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 482 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred ccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 4468889999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred h-hc-cccc-eeecCCCCCCCccc
Q 002349 495 I-NC-LSLS-VLFIGNPGLCGYWL 515 (933)
Q Consensus 495 ~-~~-~~~~-~~~~~N~~~C~~~l 515 (933)
. .+ ..++ +.+.+|||.|+|.+
T Consensus 562 l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 562 LQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp TTCCCTTCCEEECTTCCBCCSGGG
T ss_pred HHhhhCcCCEEEeeCCCCcccCCc
Confidence 3 33 3455 77899999999975
No 35
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-45 Score=412.11 Aligned_cols=262 Identities=25% Similarity=0.352 Sum_probs=207.8
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEec------CCc
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLS------SSG 668 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~------~~~ 668 (933)
++|+..+.||+|+||+||+|+++ +|+.||||++.... ....+.+.+|+++|++++|||||++++++.. .+.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 57999999999999999999976 58999999997543 3345678899999999999999999998764 356
Q ss_pred cEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccc
Q 002349 669 NLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAK 748 (933)
Q Consensus 669 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~ 748 (933)
.|+|||||+ |+|.+++. ..+++++.++..++.|++.||+|||++ +||||||||+|||++.++.+||+|||+|+
T Consensus 134 ~~ivmE~~~-g~L~~~i~---~~~~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGla~ 206 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIH---SSQPLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGMAR 206 (398)
T ss_dssp EEEEEECCS-EEHHHHHT---SSSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCB
T ss_pred EEEEEeCCC-CCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecceee
Confidence 799999996 68999994 467899999999999999999999966 99999999999999999999999999998
Q ss_pred ccccCC---CceeeeecccccccCccccccC-CCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccccccc
Q 002349 749 SLCVSK---SYTSTYIMGTIGYIDPEYARTS-RLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETV 824 (933)
Q Consensus 749 ~~~~~~---~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 824 (933)
.+.... .......+||+.|||||++.+. .++.++||||+||++|||++|+.||.+......+..+....+......
T Consensus 207 ~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~ 286 (398)
T 4b99_A 207 GLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAV 286 (398)
T ss_dssp CC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGG
T ss_pred ecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHH
Confidence 764322 2223456899999999998875 569999999999999999999999998777666554433222221111
Q ss_pred Cccc------------ccc-ccCH-----HHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 825 DPEI------------SAT-CKDL-----GAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 825 ~~~~------------~~~-~~~~-----~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
.... +.. .... .....+.+++.+||..||++|||++|++++-
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp 346 (398)
T 4b99_A 287 IQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRHP 346 (398)
T ss_dssp TC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSG
T ss_pred hhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcCH
Confidence 1000 000 0000 1135678999999999999999999998753
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-46 Score=440.70 Aligned_cols=412 Identities=18% Similarity=0.197 Sum_probs=358.6
Q ss_pred CcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhh
Q 002349 68 FTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLIL 147 (933)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (933)
.+++.|+|++|.+++..+..|.++++|++|+|++|++++..|..|+++++|++|||++|+++ .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 47889999999999888889999999999999999999888999999999999999999998 67776 8999999999
Q ss_pred cccCccC-CCCcccccCCCCceeeeecCCCCCCcccccccCCCC--cEEeccCccc--cCccCcCCcC------------
Q 002349 148 KNNQLIG-PIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGL--WYFDVRNNSL--TGSIPQNIGN------------ 210 (933)
Q Consensus 148 ~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~p~~l~~------------ 210 (933)
++|++++ .+|..|+++++|++|+|++|++++ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9999997 578999999999999999999986 467778888 9999999999 6677766655
Q ss_pred --------------CCCCcEEcccccc-------ccCcCCCCccccccceEeccccccccccCcccc---ccccccEEec
Q 002349 211 --------------CTSFQVLDLSYNQ-------LSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIG---LMQALAVLDL 266 (933)
Q Consensus 211 --------------l~~L~~L~L~~N~-------l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~L 266 (933)
+++|+.|++++|+ +.+.+|......+|+.|++++|.+++..+..+. ..++|++|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 7788999999987 666666444556899999999998865433322 2458999999
Q ss_pred cCCcCcCCCCCCC-----CCCCCccEEEeeCCccCCCCC-CccccC---CcceEeeeccccccccCCccccccccccccc
Q 002349 267 SCNMLSGPIPPIL-----GNLSYTEKLYLHSNKLTGHIP-PELGNM---TKLHYLELNDNQLTGHIPPALGKLTDLFDLN 337 (933)
Q Consensus 267 s~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~p-~~l~~l---~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~ 337 (933)
++|.++|.+|..+ +++++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|+
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ 330 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLD 330 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred ecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEE
Confidence 9999999999988 9999999999999999 455 455554 67999999999997542 236889999999
Q ss_pred cccccCCCCCCCCcccCCCCCceeccCcccCC--CCCcccccccccceecCCcccccCCCcc-ccccccccceeeccCCc
Q 002349 338 VANNHLEGPIPDNLSSCTNLNSLNVHGNKLNG--TIPPAFQRLESMTYLNLSLNNIRGPIPV-ELSRIGNLDTLDMSNNK 414 (933)
Q Consensus 338 L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~ 414 (933)
+++|++.+..|..+..+++|+.|++++|++++ .+|..|..+++|++|++++|.+++.+|. .+..+++|+.|+|++|+
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 99999999899999999999999999999996 4567899999999999999999985665 48889999999999999
Q ss_pred cCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCccc
Q 002349 415 ISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVM 492 (933)
Q Consensus 415 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 492 (933)
+++..|..+. ++|+.|+|++|+|+ .+|..+.++++|++|+|++|++++..+..+..+++|++|++++|+++|..+
T Consensus 411 l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 411 LTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 9988887765 78999999999999 788888899999999999999995444449999999999999999999765
No 37
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=9.8e-45 Score=401.43 Aligned_cols=263 Identities=22% Similarity=0.302 Sum_probs=200.7
Q ss_pred HHHHHhhccCcceeeecccceeEEEEEEc----CCceEEEEEecccCchhHHHHHHHHHHHhcC-CCCceeeeeeEEecC
Q 002349 592 DIMRMTENLSEKYIIGYGASSTVYKCVLK----NCKPVAIKRLYSHYPQCLKEFETELETVGSI-KHRNLVSLQGYSLSS 666 (933)
Q Consensus 592 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~ 666 (933)
.+....++|++.+.||+|+||+||+|+++ .++.||+|++.... ...++.+|+++++.+ +|||||++++++.+.
T Consensus 15 ~~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~ 92 (361)
T 4f9c_A 15 AVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKN 92 (361)
T ss_dssp HSGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEET
T ss_pred hcCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEEC
Confidence 33345678999999999999999999864 35789999986643 345688999999998 699999999999999
Q ss_pred CccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCC-CCeEEeecc
Q 002349 667 SGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKD-FEAHLTDFG 745 (933)
Q Consensus 667 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~-~~~kl~DfG 745 (933)
++.|+||||+++|+|.+++. .+++.++..++.|++.||+|||++ ||+||||||+|||++.+ +.+||+|||
T Consensus 93 ~~~~lvmE~~~g~~L~~~~~------~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl~DFG 163 (361)
T 4f9c_A 93 DHVVIAMPYLEHESFLDILN------SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYALVDFG 163 (361)
T ss_dssp TEEEEEEECCCCCCHHHHHT------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred CEEEEEEeCCCcccHHHHHc------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEECcCC
Confidence 99999999999999999983 489999999999999999999966 99999999999999877 799999999
Q ss_pred cccccccCCC---------------------------ceeeeecccccccCccccccC-CCCcchhhHHHHHHHHHHHhC
Q 002349 746 IAKSLCVSKS---------------------------YTSTYIMGTIGYIDPEYARTS-RLTEKSDVYSFGIVLLELLTG 797 (933)
Q Consensus 746 la~~~~~~~~---------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGv~l~elltg 797 (933)
+|+....... ......+||+.|||||++.+. .|+.++||||+||++|||++|
T Consensus 164 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G 243 (361)
T 4f9c_A 164 LAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSG 243 (361)
T ss_dssp TCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHT
T ss_pred CCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHC
Confidence 9986532211 112335799999999999875 589999999999999999999
Q ss_pred CCCCCCCcc-hhHHHHhhhcccc-------------c------c--------------cccCcccccc----c----cCH
Q 002349 798 RKAVDNECN-LHHLILSKTANNA-------------V------M--------------ETVDPEISAT----C----KDL 835 (933)
Q Consensus 798 ~~p~~~~~~-~~~~~~~~~~~~~-------------~------~--------------~~~~~~~~~~----~----~~~ 835 (933)
+.||....+ ..++.......+. . . +...+..... . ...
T Consensus 244 ~~Pf~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 323 (361)
T 4f9c_A 244 RYPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWN 323 (361)
T ss_dssp CSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CT
T ss_pred CCCCCCCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhccccccccccccccccccccccccc
Confidence 999964433 2222211110000 0 0 0000000000 0 000
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 836 GAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 836 ~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+.+..+++.+|++.||++|||++|++++
T Consensus 324 ~is~~a~DLl~~lL~~dP~~R~ta~eaL~H 353 (361)
T 4f9c_A 324 EVPDEAYDLLDKLLDLNPASRITAEEALLH 353 (361)
T ss_dssp TCCHHHHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred cCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence 113567899999999999999999999875
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1e-44 Score=430.65 Aligned_cols=428 Identities=19% Similarity=0.198 Sum_probs=331.6
Q ss_pred EEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhccc
Q 002349 71 IALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNN 150 (933)
Q Consensus 71 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 150 (933)
..+|++++++++ +|..+. ++|++|+|++|++++..|..|+++++|++|+|++|.+++..|..|+++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 578888998885 776654 78899999999998777778999999999999999998877888999999999999999
Q ss_pred CccCCCCcccccCCCCceeeeecCCCCC-CcccccccCCCCcEEeccCccccCccCcCCcCCCCC--cEEccccccc--c
Q 002349 151 QLIGPIPSTLSQLPNLKVFGLRGNNLVG-TLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSF--QVLDLSYNQL--S 225 (933)
Q Consensus 151 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~~N~l--~ 225 (933)
+++ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|++++|.+++. .+..+++| ++|++++|++ +
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 988 56666 78999999999999886 3467889999999999999998853 35555555 9999999988 7
Q ss_pred CcCCCCccccc--cceEeccccccccccCc-cccccccccEEeccCCcC-----cCCCCCCCCCC---------------
Q 002349 226 GEIPFNIGFLQ--IATLSLQGNQLTGKIPS-VIGLMQALAVLDLSCNML-----SGPIPPILGNL--------------- 282 (933)
Q Consensus 226 ~~~p~~~~~~~--L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l-----~~~~~~~~~~l--------------- 282 (933)
+..|..+.... ...+++++|.+.+.++. .+..+++|+.|++++|.. .+.+ ..+..+
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HHHHSCSSCEEEEEEEEEECH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH-HHHhccCcceEEEecCCcCcH
Confidence 77777766543 23456677777665543 345567777777777631 1000 111222
Q ss_pred ------------CCccEEEeeCCccCCCCCCcc-----ccCCcceEeeeccccccccCC-cccccc---ccccccccccc
Q 002349 283 ------------SYTEKLYLHSNKLTGHIPPEL-----GNMTKLHYLELNDNQLTGHIP-PALGKL---TDLFDLNVANN 341 (933)
Q Consensus 283 ------------~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~~~-~~l~~l---~~L~~L~L~~N 341 (933)
++|++|++++|.++|.+|..+ .+++.|+.++++.|.+ .+| ..+..+ .+|+.|++++|
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCC
Confidence 367777777777777677666 6666666666666665 233 222222 56888889988
Q ss_pred cCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCC--ccccccccccceeeccCCccCCCC
Q 002349 342 HLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPI--PVELSRIGNLDTLDMSNNKISGSI 419 (933)
Q Consensus 342 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~ 419 (933)
++.... ....+++|++|++++|++++.+|..|..+++|++|+|++|++++.. |..+..+++|+.|+|++|++++.+
T Consensus 342 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 342 PFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred Cccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 886322 1268899999999999999989999999999999999999999743 467889999999999999999845
Q ss_pred CC-CCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcccc-hhhc
Q 002349 420 PS-PLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMS-LINC 497 (933)
Q Consensus 420 p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~ 497 (933)
|. .+..+++|+.|+|++|++++.+|..+. ++|++|+|++|+|+ .+|..+..+++|+.|+|++|++++.++. +..+
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 496 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRL 496 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTC
T ss_pred ChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcC
Confidence 54 588899999999999999988877665 78999999999999 6777777999999999999999987766 5666
Q ss_pred cccc-eeecCCCCCCCccc
Q 002349 498 LSLS-VLFIGNPGLCGYWL 515 (933)
Q Consensus 498 ~~~~-~~~~~N~~~C~~~l 515 (933)
..+. +.+.+|||.|+|++
T Consensus 497 ~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 497 TSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTCCCEECCSCCBCCCHHH
T ss_pred CCCCEEEecCCCcCCCcch
Confidence 6666 77899999999865
No 39
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=5.4e-44 Score=419.66 Aligned_cols=253 Identities=20% Similarity=0.290 Sum_probs=215.6
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEe
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDF 675 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 675 (933)
.++|++.+.||+|+||+||+|+++ +|+.||+|++........+.+.+|+++|+.++|||||+++++|.++...++||||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~ 235 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 235 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence 468999999999999999999976 5889999999876666677889999999999999999999999999999999999
Q ss_pred cCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCC--CCeEEeecccccccccC
Q 002349 676 MENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKD--FEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 676 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~--~~~kl~DfGla~~~~~~ 753 (933)
|+||+|.+++. .....+++.++..++.||+.||+|||++ +|+||||||+|||++.+ +.+||+|||+|+.+...
T Consensus 236 ~~gg~L~~~i~--~~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~ 310 (573)
T 3uto_A 236 MSGGELFEKVA--DEHNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK 310 (573)
T ss_dssp CCCCBHHHHHT--CTTSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTT
T ss_pred cCCCcHHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEccCC
Confidence 99999999985 2446799999999999999999999976 99999999999999854 89999999999987432
Q ss_pred CCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCK 833 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (933)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+......................+.
T Consensus 311 --~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~------ 382 (573)
T 3uto_A 311 --QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSG------ 382 (573)
T ss_dssp --SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCSGGGTT------
T ss_pred --CceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCCCCCcccccC------
Confidence 334456899999999999999999999999999999999999999998766655544333222222211111
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 834 DLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 834 ~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
.+..+.+++.+||+.||++|||++|++++
T Consensus 383 ---~s~~~~dli~~~L~~dp~~R~t~~e~l~H 411 (573)
T 3uto_A 383 ---ISEDGKDFIRKLLLADPNTRMTIHQALEH 411 (573)
T ss_dssp ---SCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred ---CCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 13567889999999999999999999985
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.1e-45 Score=431.94 Aligned_cols=415 Identities=20% Similarity=0.263 Sum_probs=344.7
Q ss_pred CcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCC-CCCcccccccchhhhh
Q 002349 68 FTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYG-DIPFSISKLKQLEFLI 146 (933)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~ 146 (933)
.++..|+|++|.+++..+..|+++++|++|+|++|++++..|..|+++++|++|+|++|.+++ .+|..++++++|++|+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 367899999999999888999999999999999999998777779999999999999999986 4678899999999999
Q ss_pred hcccCccCCCC-cccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcC-CcCCCCCcEEccccccc
Q 002349 147 LKNNQLIGPIP-STLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQN-IGNCTSFQVLDLSYNQL 224 (933)
Q Consensus 147 L~~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~N~l 224 (933)
|++|.+.+.+| ..++++++|++|++++|++++..|..+..+++|++|++++|.+.. +|.. +..+++|++|++++|++
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBC
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCcc
Confidence 99999655555 689999999999999999999999999999999999999998863 4443 35688999999999998
Q ss_pred cCcC--CCCc--ccc----------------------------ccceEecccccccccc------CccccccccccEEec
Q 002349 225 SGEI--PFNI--GFL----------------------------QIATLSLQGNQLTGKI------PSVIGLMQALAVLDL 266 (933)
Q Consensus 225 ~~~~--p~~~--~~~----------------------------~L~~L~L~~n~l~~~~------p~~~~~l~~L~~L~L 266 (933)
++.. |..+ ... +++.|++++|.+.+.. ...+..+.+|+.|++
T Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 288 (549)
T 2z81_A 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288 (549)
T ss_dssp TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred ccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence 8632 1111 112 3455555555554421 123566788999999
Q ss_pred cCCcCcCC-----CCCCCCCCCCccEEEeeCCccCCCCCCcc-ccCCcceEeeeccccccccCC---ccccccccccccc
Q 002349 267 SCNMLSGP-----IPPILGNLSYTEKLYLHSNKLTGHIPPEL-GNMTKLHYLELNDNQLTGHIP---PALGKLTDLFDLN 337 (933)
Q Consensus 267 s~N~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~ 337 (933)
.++.+... .+..+...++|+.|++++|+++ .+|..+ ..+++|++|++++|++++.+| ..++.+++|+.|+
T Consensus 289 ~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~ 367 (549)
T 2z81_A 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367 (549)
T ss_dssp ESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE
T ss_pred cccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEE
Confidence 99887632 1112234578999999999998 667665 579999999999999998764 4478899999999
Q ss_pred cccccCCCCCC--CCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCcc
Q 002349 338 VANNHLEGPIP--DNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKI 415 (933)
Q Consensus 338 L~~N~l~~~~p--~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 415 (933)
+++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++. +|..+ .++|+.|+|++|+|
T Consensus 368 Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l 443 (549)
T 2z81_A 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNL 443 (549)
T ss_dssp CTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCC
T ss_pred ccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCCh
Confidence 99999986432 45889999999999999999 678889999999999999999984 44433 26899999999999
Q ss_pred CCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcccch
Q 002349 416 SGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSL 494 (933)
Q Consensus 416 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 494 (933)
++.+ ..+++|++|+|++|+|+ .+|. ...+++|++|+|++|++++.+|..+..+++|+.|++++|+|+|..+..
T Consensus 444 ~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 444 DSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp SCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred hhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence 9653 57899999999999999 5665 578999999999999999999999999999999999999999988743
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.9e-44 Score=414.67 Aligned_cols=391 Identities=20% Similarity=0.229 Sum_probs=303.6
Q ss_pred CCCCCccc--eEecCCCCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCC
Q 002349 53 SDYCVWRG--ITCDNVTFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYG 130 (933)
Q Consensus 53 ~~~c~w~g--v~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 130 (933)
.+.|.|.+ |.|++ ++++ .+|. +. ++|++|+|++|++++..|..|+++++|++|+|++|.+.+
T Consensus 5 ~~~c~~~~~~~~c~~------------~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~ 68 (455)
T 3v47_A 5 TSECSVIGYNAICIN------------RGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL 68 (455)
T ss_dssp --CCEEETTEEECCS------------SCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC
T ss_pred cceeEEEccccCcCC------------CCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccc
Confidence 34566655 66653 3444 4444 22 789999999999998888999999999999999999986
Q ss_pred CC-CcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccc--cccCCCCcEEeccCccccCccCcC
Q 002349 131 DI-PFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPD--MCQLSGLWYFDVRNNSLTGSIPQN 207 (933)
Q Consensus 131 ~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~p~~ 207 (933)
.+ |..|.++++|++|+|++|++++..|..|+++++|++|+|++|++++..+.. +..+++|++|+|++|.+++..|..
T Consensus 69 ~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 148 (455)
T 3v47_A 69 VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG
T ss_pred eECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc
Confidence 66 456899999999999999999888889999999999999999998766555 888899999999999998877766
Q ss_pred -CcCCCCCcEEccccccccCcCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCC--------
Q 002349 208 -IGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPI-------- 278 (933)
Q Consensus 208 -l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-------- 278 (933)
+.++++|++|++++|++++..|..+.... ..+|+.|++++|.+.+..+..
T Consensus 149 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~---------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 207 (455)
T 3v47_A 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQ---------------------GKHFTLLRLSSITLQDMNEYWLGWEKCGN 207 (455)
T ss_dssp GGGGCTTCCEEECTTCCBSCCCTTTSGGGT---------------------TCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred ccCCCCcccEEeCCCCcccccChhhhhccc---------------------cccccccccccCcccccchhhcccccccc
Confidence 78888899998888888766665443210 134555555555555443332
Q ss_pred CCCCCCccEEEeeCCccCCCCCCccccC---CcceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccC-
Q 002349 279 LGNLSYTEKLYLHSNKLTGHIPPELGNM---TKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSC- 354 (933)
Q Consensus 279 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l---~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l- 354 (933)
+..+++|++|+|++|++++..|..+... ++|+.|++++|.+.+.. +..+.+.+..+..+..+
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ 273 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGLE 273 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGGT
T ss_pred ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------cchhhhccCccccccccc
Confidence 2345667777777777776666655444 67777777777665321 12222333333334333
Q ss_pred -CCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCcccccccc
Q 002349 355 -TNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLN 433 (933)
Q Consensus 355 -~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 433 (933)
++|+.|++++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|.+++..|..|..+++|+.|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 6889999999999888888899999999999999999988888899999999999999999888888899999999999
Q ss_pred ccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcccch
Q 002349 434 LSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSL 494 (933)
Q Consensus 434 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 494 (933)
|++|++++..|..|.++++|++|+|++|++++..+..+..+++|++|++++|+++|.+|..
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 9999999888999999999999999999999877778899999999999999999988754
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.2e-44 Score=390.36 Aligned_cols=293 Identities=31% Similarity=0.495 Sum_probs=229.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCcCCCCCCCCCCCCC--ccceEecCCC--CcEEEEEcCCCCcCc--ccCCCCCCCCCc
Q 002349 21 SVDSEDGATLLKIKKSFRDVDNVLYDWTDSPSSDYCV--WRGITCDNVT--FTVIALNLSGLNLDG--EISPAVGDLKDL 94 (933)
Q Consensus 21 ~~~~~d~~all~~k~~~~~~~~~l~~w~~~~~~~~c~--w~gv~C~~~~--~~v~~l~l~~~~l~~--~~~~~l~~l~~L 94 (933)
.|.++|++||++||+++.||. .+++|+. +.+||. |.||+|+..+ ++|+.|+|++++++| .+|+.++++++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~--~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L 78 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLP--TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCT--TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCC--CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence 588999999999999999886 7899965 468998 9999998655 789999999999998 888888888888
Q ss_pred cEEEccC-CcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeec
Q 002349 95 QSIDLRG-NRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRG 173 (933)
Q Consensus 95 ~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 173 (933)
++|+|++ |++.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++|+|++|.+++.+|..++.+++|++|+|++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence 8888884 888888888888888888888888888888888888888888888888888877777777777777777777
Q ss_pred CCCCCCcccccccCC-CCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCCCCccccccceEeccccccccccC
Q 002349 174 NNLVGTLSPDMCQLS-GLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIP 252 (933)
Q Consensus 174 N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p 252 (933)
|++++.+|..++.++ +|++|++++|++++.+|..+..++ |++|++++|+ +++..|
T Consensus 159 N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-----------------------l~~~~~ 214 (313)
T 1ogq_A 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-----------------------LEGDAS 214 (313)
T ss_dssp SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-----------------------EEECCG
T ss_pred CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-----------------------ccCcCC
Confidence 777766666666665 666666666666666666555554 5555555444 444556
Q ss_pred ccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCcccccccc
Q 002349 253 SVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTD 332 (933)
Q Consensus 253 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~ 332 (933)
..+..+++|+.|+|++|.+++.++. +..+++|++|+|++|++++.+|..+..+++|++|+|++|++++.+|.. ..+++
T Consensus 215 ~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~ 292 (313)
T 1ogq_A 215 VLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQR 292 (313)
T ss_dssp GGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGG
T ss_pred HHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccc
Confidence 6677777888888888888765554 677778888888888887777777888888888888888887777765 67777
Q ss_pred cccccccccc
Q 002349 333 LFDLNVANNH 342 (933)
Q Consensus 333 L~~L~L~~N~ 342 (933)
|+.|++++|+
T Consensus 293 L~~l~l~~N~ 302 (313)
T 1ogq_A 293 FDVSAYANNK 302 (313)
T ss_dssp SCGGGTCSSS
T ss_pred cChHHhcCCC
Confidence 7777777776
No 43
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=1.9e-43 Score=410.41 Aligned_cols=248 Identities=23% Similarity=0.251 Sum_probs=199.5
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHH---HHHHHHHHHhcCCCCceeeeeeEEecCCccE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLK---EFETELETVGSIKHRNLVSLQGYSLSSSGNL 670 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~---~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 670 (933)
++|+..++||+|+||+||+|+++ +|+.||||++.... ..... ....++++++.++|||||+++++|.+.+..|
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly 268 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 268 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence 67999999999999999999976 48899999996432 11122 2344577788889999999999999999999
Q ss_pred EEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccc
Q 002349 671 LFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSL 750 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~ 750 (933)
+|||||+||+|.+++. ..+.+++..+..++.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+.+
T Consensus 269 lVmEy~~GGdL~~~l~---~~~~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFGlA~~~ 342 (689)
T 3v5w_A 269 FILDLMNGGDLHYHLS---QHGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDF 342 (689)
T ss_dssp EEECCCCSCBHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEecCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccceeeec
Confidence 9999999999999995 456799999999999999999999965 9999999999999999999999999999876
Q ss_pred ccCCCceeeeecccccccCccccc-cCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHH-HhhhcccccccccCccc
Q 002349 751 CVSKSYTSTYIMGTIGYIDPEYAR-TSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLI-LSKTANNAVMETVDPEI 828 (933)
Q Consensus 751 ~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 828 (933)
.... ....+||+.|||||++. +..|+.++||||+||++|||++|+.||.+........ ........ ..+
T Consensus 343 ~~~~---~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~------~~~ 413 (689)
T 3v5w_A 343 SKKK---PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMA------VEL 413 (689)
T ss_dssp SSCC---CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCC------CCC
T ss_pred CCCC---CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCC------CCC
Confidence 4332 33468999999999996 4579999999999999999999999997543222111 11111110 111
Q ss_pred cccccCHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHH
Q 002349 829 SATCKDLGAVKKVFQLALLCSKRQPTDRPT-----MHEVSRV 865 (933)
Q Consensus 829 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPt-----~~evl~~ 865 (933)
+.. .+.++.+++.+||+.||++|++ ++||.++
T Consensus 414 p~~-----~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~H 450 (689)
T 3v5w_A 414 PDS-----FSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKES 450 (689)
T ss_dssp CTT-----SCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTS
T ss_pred Ccc-----CCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcC
Confidence 111 1356788999999999999998 7888764
No 44
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=1.1e-42 Score=383.58 Aligned_cols=285 Identities=39% Similarity=0.648 Sum_probs=233.3
Q ss_pred ccccCHHHHHHHhhccCcceeeecccceeEEEEEEcCCceEEEEEecccCc-hhHHHHHHHHHHHhcCCCCceeeeeeEE
Q 002349 585 MALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYP-QCLKEFETELETVGSIKHRNLVSLQGYS 663 (933)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~ 663 (933)
...+.++++....++|+..+.||+|+||.||+|.+++++.||||++..... .....+.+|++++++++||||+++++++
T Consensus 17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 96 (326)
T 3uim_A 17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 96 (326)
T ss_dssp CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEE
T ss_pred cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEE
Confidence 456778999999999999999999999999999988899999999976532 2334689999999999999999999999
Q ss_pred ecCCccEEEEEecCCCCHHHHhcCCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEe
Q 002349 664 LSSSGNLLFYDFMENGSLWDILHGPT-KKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLT 742 (933)
Q Consensus 664 ~~~~~~~lv~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~ 742 (933)
...+..++||||+++|+|.++++... ....+++..+..++.|++.||+|||+++..+|+||||||+||+++.++.+||+
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~ 176 (326)
T 3uim_A 97 MTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVG 176 (326)
T ss_dssp CCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEEC
T ss_pred ecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEec
Confidence 99999999999999999999997532 33459999999999999999999997555599999999999999999999999
Q ss_pred ecccccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCC-------CcchhHHHHhhh
Q 002349 743 DFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDN-------ECNLHHLILSKT 815 (933)
Q Consensus 743 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~-------~~~~~~~~~~~~ 815 (933)
|||+++..............||+.|+|||++.+..++.++||||+|+++|+|++|+.||+. ......+.....
T Consensus 177 Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 256 (326)
T 3uim_A 177 DFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLL 256 (326)
T ss_dssp CCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTT
T ss_pred cCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHh
Confidence 9999987755555555556799999999999998999999999999999999999999961 112222222222
Q ss_pred cccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 816 ANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
.........+....... ....+..+.+++.+|++.||++|||++||+++|+...
T Consensus 257 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~ 310 (326)
T 3uim_A 257 KEKKLEALVDVDLQGNY-KDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDG 310 (326)
T ss_dssp SSCCSTTSSCTTCTTSC-CHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSS
T ss_pred hchhhhhhcChhhcccc-CHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcc
Confidence 22222222233222222 3466789999999999999999999999999998743
No 45
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.8e-43 Score=419.83 Aligned_cols=410 Identities=18% Similarity=0.196 Sum_probs=336.2
Q ss_pred CcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhh
Q 002349 68 FTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLIL 147 (933)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (933)
..++.|+|++|.+++..+..|.++++|++|+|++|++++..|..|+++++|++|||++|.++ .+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 47889999999999888889999999999999999999888999999999999999999998 77877 8999999999
Q ss_pred cccCccC-CCCcccccCCCCceeeeecCCCCCCcccccccCCCC--cEEeccCccc--cCccCcCCcCCC--CCcEEccc
Q 002349 148 KNNQLIG-PIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGL--WYFDVRNNSL--TGSIPQNIGNCT--SFQVLDLS 220 (933)
Q Consensus 148 ~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~--~L~~L~L~ 220 (933)
++|++++ .+|..|+++++|++|+|++|++.+. .+..+++| ++|++++|.+ ++..|..+..+. .| .++++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~ 204 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFH 204 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEEC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEec
Confidence 9999997 4578999999999999999999864 45555666 9999999999 888888777654 22 34555
Q ss_pred cccccCcCCCCc--cccccceEecccc----------------------------ccccc----cCccccccccccEEec
Q 002349 221 YNQLSGEIPFNI--GFLQIATLSLQGN----------------------------QLTGK----IPSVIGLMQALAVLDL 266 (933)
Q Consensus 221 ~N~l~~~~p~~~--~~~~L~~L~L~~n----------------------------~l~~~----~p~~~~~l~~L~~L~L 266 (933)
+|.+.+.++... ...+|+.|++++| .+++. ++..+ ..++|++|++
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l 283 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNI 283 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEE
Confidence 666555443321 1123444444444 33221 11111 2248999999
Q ss_pred cCCcCcCCCCCCC-----CCCCCccEEEeeCCccCCCCC-CccccC---CcceEeeeccccccccCCccccccccccccc
Q 002349 267 SCNMLSGPIPPIL-----GNLSYTEKLYLHSNKLTGHIP-PELGNM---TKLHYLELNDNQLTGHIPPALGKLTDLFDLN 337 (933)
Q Consensus 267 s~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~p-~~l~~l---~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~ 337 (933)
++|.++|.+|..+ .+++.|+.+++..|.+ .+| ..+..+ .+|+.|++++|.+.... ....+++|++|+
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 359 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLN 359 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred eccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEE
Confidence 9999999999887 7888888888888887 344 333322 67999999999997432 236889999999
Q ss_pred cccccCCCCCCCCcccCCCCCceeccCcccCCCC--CcccccccccceecCCcccccCCCc-cccccccccceeeccCCc
Q 002349 338 VANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTI--PPAFQRLESMTYLNLSLNNIRGPIP-VELSRIGNLDTLDMSNNK 414 (933)
Q Consensus 338 L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~ 414 (933)
+++|++++..|..+..+++|+.|++++|++++.. |..|..+++|++|++++|++++.+| ..+..+++|+.|+|++|+
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 9999999989999999999999999999999643 4678999999999999999998455 458899999999999999
Q ss_pred cCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchh-hccccccceeeecCCCCcCcccc
Q 002349 415 ISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEE-LSQLQNMFSLRLDYNNLSGDVMS 493 (933)
Q Consensus 415 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~~~~~~ 493 (933)
+++..|..+. ++|+.|+|++|+|+ .+|..+.++++|++|+|++|+|++ +|.. +..+++|+.|++++|+|+|..+.
T Consensus 440 l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 440 LTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 9988777665 78999999999999 677777799999999999999995 5554 99999999999999999998764
No 46
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=1.5e-42 Score=381.66 Aligned_cols=277 Identities=41% Similarity=0.630 Sum_probs=226.6
Q ss_pred HHHHHHhhccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccE
Q 002349 591 EDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNL 670 (933)
Q Consensus 591 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 670 (933)
.++...+++|+..+.||+|+||.||+|.+++++.||||++........+.+.+|++++++++||||+++++++...+..+
T Consensus 32 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 111 (321)
T 2qkw_B 32 VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMI 111 (321)
T ss_dssp SCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCE
T ss_pred HHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEE
Confidence 34455678999999999999999999998889999999998776667788999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHhcCCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccc
Q 002349 671 LFYDFMENGSLWDILHGPT-KKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKS 749 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~ 749 (933)
+||||+++|+|.+++.... ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 112 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~ 188 (321)
T 2qkw_B 112 LIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGISKK 188 (321)
T ss_dssp EEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEEECCCTTCEE
T ss_pred EEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEEEeecccccc
Confidence 9999999999999996432 223689999999999999999999976 999999999999999999999999999986
Q ss_pred cccCC-CceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchh-----HHHHhhhcccccccc
Q 002349 750 LCVSK-SYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLH-----HLILSKTANNAVMET 823 (933)
Q Consensus 750 ~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~-----~~~~~~~~~~~~~~~ 823 (933)
..... ........||+.|+|||++.+..++.++||||||+++|||++|+.||....... .+.............
T Consensus 189 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (321)
T 2qkw_B 189 GTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQI 268 (321)
T ss_dssp CSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSS
T ss_pred cccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHh
Confidence 53222 222334568999999999999999999999999999999999999997543221 111111222222233
Q ss_pred cCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 824 VDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 824 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
+++...... ....+..+.+++.+||+.||++|||++|+++.|+.+..
T Consensus 269 ~~~~~~~~~-~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~ 315 (321)
T 2qkw_B 269 VDPNLADKI-RPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR 315 (321)
T ss_dssp SSSSCTTCS-CHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cChhhcccc-CHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhh
Confidence 333332222 34677889999999999999999999999999987643
No 47
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1e-42 Score=402.68 Aligned_cols=380 Identities=22% Similarity=0.236 Sum_probs=293.1
Q ss_pred CCCCccceEecC-CCCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccC-CCCccCCCCCceecccccccCCC
Q 002349 54 DYCVWRGITCDN-VTFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQI-PDEIGDCSSLKSLDLSFNELYGD 131 (933)
Q Consensus 54 ~~c~w~gv~C~~-~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~ 131 (933)
-.|.+.|++.-. ...+++.|+|++|.+++..|..++++++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+++.
T Consensus 15 ~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 94 (455)
T 3v47_A 15 AICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94 (455)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE
T ss_pred cCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc
Confidence 347777765422 3457899999999999988999999999999999999998766 46799999999999999999988
Q ss_pred CCcccccccchhhhhhcccCccCCCCcc--cccCCCCceeeeecCCCCCCcccc-cccCCCCcEEeccCccccCccCcCC
Q 002349 132 IPFSISKLKQLEFLILKNNQLIGPIPST--LSQLPNLKVFGLRGNNLVGTLSPD-MCQLSGLWYFDVRNNSLTGSIPQNI 208 (933)
Q Consensus 132 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~p~~l 208 (933)
.|..|+++++|++|+|++|++++.+|.. ++.+++|++|+|++|++++..|.. +.++++|++|++++|.+++..|..+
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 8999999999999999999999866655 999999999999999999888876 8999999999999999999999988
Q ss_pred cCC--CCCcEEccccccccCcCCCCcc---------ccccceEeccccccccccCccccccccccEEeccCCcCcCCCCC
Q 002349 209 GNC--TSFQVLDLSYNQLSGEIPFNIG---------FLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPP 277 (933)
Q Consensus 209 ~~l--~~L~~L~L~~N~l~~~~p~~~~---------~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 277 (933)
..+ .+|+.|++++|.+++..+..+. ..+|++|++++|++++..|..+...
T Consensus 175 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~------------------- 235 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA------------------- 235 (455)
T ss_dssp GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH-------------------
T ss_pred hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc-------------------
Confidence 877 6899999999999865544332 1234555555555554444444332
Q ss_pred CCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccc--cccccccccccccCCCCCCCCcccCC
Q 002349 278 ILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGK--LTDLFDLNVANNHLEGPIPDNLSSCT 355 (933)
Q Consensus 278 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~--l~~L~~L~L~~N~l~~~~p~~l~~l~ 355 (933)
...++|+.|++++|.+.+.. +..+.+.+..+..+.. .++|+.|++++|++.+..|..+..++
T Consensus 236 --~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 299 (455)
T 3v47_A 236 --IAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299 (455)
T ss_dssp --TTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT
T ss_pred --ccccceeeEeeccccccccc--------------cchhhhccCcccccccccccCceEEEecCccccccchhhcccCC
Confidence 00144555555555443211 0111111111222222 24666667777776666666777777
Q ss_pred CCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCcccccccccc
Q 002349 356 NLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLS 435 (933)
Q Consensus 356 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 435 (933)
+|++|++++|++++..|..|..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..|..|..+++|++|+|+
T Consensus 300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECC
Confidence 77777777777777777777778888888888888877777888888888888888888888888889999999999999
Q ss_pred CcccccccccccccccccceEEccCCccccccc
Q 002349 436 RNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIP 468 (933)
Q Consensus 436 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 468 (933)
+|+|++..+..|.++++|++|+|++|++++..|
T Consensus 380 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999998777788999999999999999998777
No 48
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=3.5e-42 Score=375.94 Aligned_cols=265 Identities=28% Similarity=0.431 Sum_probs=206.3
Q ss_pred HhhccCcceeeecccceeEEEEEEcCCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
..++|+..+.||+|+||+||+|.+ .++.||||++.... ....+++.+|++++++++||||+++++++...+..++||
T Consensus 35 ~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 113 (309)
T 3p86_A 35 PWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVT 113 (309)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEE
T ss_pred ChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEE
Confidence 457899999999999999999987 46889999987653 334567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPR--IIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
||+++|+|.++++.......+++..++.++.|++.||+|||++ + |+||||||+||+++.++.+||+|||+++...
T Consensus 114 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~ 190 (309)
T 3p86_A 114 EYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKA 190 (309)
T ss_dssp ECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEECCCC------
T ss_pred ecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEECCCCCCcccc
Confidence 9999999999996422223499999999999999999999965 7 9999999999999999999999999997643
Q ss_pred cCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccc
Q 002349 752 VSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISAT 831 (933)
Q Consensus 752 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (933)
.. ........||+.|+|||++.+..++.++|||||||++|||++|+.||.+................ ..++.
T Consensus 191 ~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~------~~~~~- 262 (309)
T 3p86_A 191 ST-FLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKR------LEIPR- 262 (309)
T ss_dssp ------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHSCCC------CCCCT-
T ss_pred cc-ccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCC------CCCCc-
Confidence 22 22234467999999999999999999999999999999999999999866544433222111111 11111
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCCCCC
Q 002349 832 CKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAPEPQ 876 (933)
Q Consensus 832 ~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~~ 876 (933)
..+..+.+++.+||+.||++|||++++++.|+.+.....|+
T Consensus 263 ----~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~p~ 303 (309)
T 3p86_A 263 ----NLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAVPP 303 (309)
T ss_dssp ----TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-----
T ss_pred ----cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCCCC
Confidence 12357889999999999999999999999999887655443
No 49
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=1.3e-41 Score=369.43 Aligned_cols=252 Identities=25% Similarity=0.332 Sum_probs=211.6
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEe
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDF 675 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 675 (933)
.++|+..+.||+|+||+||+|.+. +++.||||++........+.+.+|+.++++++||||+++++++..++..++||||
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 98 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 98 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence 358999999999999999999964 5889999999766555677889999999999999999999999999999999999
Q ss_pred cCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCC
Q 002349 676 MENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKS 755 (933)
Q Consensus 676 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~ 755 (933)
+++|+|.+++.. ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.......
T Consensus 99 ~~~~~L~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 171 (297)
T 3fxz_A 99 LAGGSLTDVVTE----TCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS 171 (297)
T ss_dssp CTTCBHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC
T ss_pred CCCCCHHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc
Confidence 999999999952 3689999999999999999999976 999999999999999999999999999987643322
Q ss_pred ceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccccCH
Q 002349 756 YTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDL 835 (933)
Q Consensus 756 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (933)
......||+.|+|||++.+..++.++||||+||++|||++|+.||.+.................. ..+ .
T Consensus 172 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~-----~~~-----~ 240 (297)
T 3fxz_A 172 -KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPEL-----QNP-----E 240 (297)
T ss_dssp -CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCC-----SCG-----G
T ss_pred -ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCC-----CCc-----c
Confidence 23446799999999999999999999999999999999999999987655444333222111100 000 1
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 836 GAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 836 ~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
..+..+.+++.+||+.||++|||++|++++-
T Consensus 241 ~~~~~~~~li~~~l~~dp~~Rps~~ell~h~ 271 (297)
T 3fxz_A 241 KLSAIFRDFLNRCLEMDVEKRGSAKELLQHQ 271 (297)
T ss_dssp GSCHHHHHHHHHHSCSSTTTSCCHHHHTTCG
T ss_pred ccCHHHHHHHHHHccCChhHCcCHHHHhhCh
Confidence 1235688999999999999999999998753
No 50
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=376.29 Aligned_cols=252 Identities=21% Similarity=0.296 Sum_probs=201.4
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
..++|+..+.||+|+||+||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++...+..++||
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 87 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVL 87 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEE
Confidence 3578999999999999999999975 58899999986643 334567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
||+++|+|.+++. ....+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++......
T Consensus 88 E~~~gg~L~~~l~---~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~ 161 (347)
T 3zgw_A 88 EYCPGGELFDYII---SQDRLSEEETRVVFRQIVSAVAYVHSQ---GYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGN 161 (347)
T ss_dssp ECCTTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBC----
T ss_pred eCCCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCccHHHEEEcCCCCEEEEeccCcccccCC
Confidence 9999999999984 345799999999999999999999976 9999999999999999999999999999876444
Q ss_pred CCceeeeecccccccCccccccCCC-CcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYARTSRL-TEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
........+||+.|+|||++.+..+ +.++||||+||++|+|++|+.||.+................. +..
T Consensus 162 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~--------p~~- 232 (347)
T 3zgw_A 162 KDYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVMALYKKIMRGKYDV--------PKW- 232 (347)
T ss_dssp ----------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCC--------CTT-
T ss_pred CCccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCC--------CCC-
Confidence 4444455689999999999998875 899999999999999999999998765544433322221111 111
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
.+..+.+++.+|++.||++|||++|++++-
T Consensus 233 ----~s~~~~~li~~~L~~dP~~Rps~~eil~hp 262 (347)
T 3zgw_A 233 ----LSPSSILLLQQMLQVDPKKRISMKNLLNHP 262 (347)
T ss_dssp ----CCHHHHHHHHHHTCSSGGGSCCHHHHHTCH
T ss_pred ----CCHHHHHHHHHHcccCHhHCcCHHHHhcCc
Confidence 134677899999999999999999999753
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.6e-41 Score=389.73 Aligned_cols=371 Identities=26% Similarity=0.320 Sum_probs=283.0
Q ss_pred CcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCC-------------ceecccccccCCCCCc
Q 002349 68 FTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSL-------------KSLDLSFNELYGDIPF 134 (933)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------------~~L~Ls~n~l~~~~p~ 134 (933)
.++..++++++++ |.+|++++++++|++|++++|+++|.+|..++++++| ++|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 3677899999999 8999999999999999999999999999999999875 999999999985 554
Q ss_pred ccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCC
Q 002349 135 SISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSF 214 (933)
Q Consensus 135 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (933)
. .++|++|+|++|.+++ +|.. +++|++|++++|++++. +.. .++|++|++++|++++ +| .++++++|
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 2 3789999999999997 7754 48999999999999853 221 2799999999999996 77 59999999
Q ss_pred cEEccccccccCcCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCc
Q 002349 215 QVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNK 294 (933)
Q Consensus 215 ~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 294 (933)
++|++++|++++ +|... .+|++|++++|++++ +| .++.+++|++|++++|.+++ +|... ++|++|++++|+
T Consensus 156 ~~L~l~~N~l~~-lp~~~--~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~ 226 (454)
T 1jl5_A 156 KIIDVDNNSLKK-LPDLP--PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNI 226 (454)
T ss_dssp CEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSC
T ss_pred CEEECCCCcCcc-cCCCc--ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCc
Confidence 999999999996 66544 489999999999997 55 68999999999999999996 44433 589999999999
Q ss_pred cCCCCCCccccCCcceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcc
Q 002349 295 LTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPA 374 (933)
Q Consensus 295 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~ 374 (933)
++ .+| .+..+++|++|++++|++++ +|.. +++|+.|++++|++.+ +|.. .++|+.|++++|++++. |..
T Consensus 227 l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~ 295 (454)
T 1jl5_A 227 LE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL 295 (454)
T ss_dssp CS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC
T ss_pred CC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc
Confidence 99 677 49999999999999999995 5543 4799999999999996 5544 37899999999999862 211
Q ss_pred cccccccceecCCcccccCCCccccccc-cccceeeccCCccCCCCCCCCCCccccccccccCccccccccccccccccc
Q 002349 375 FQRLESMTYLNLSLNNIRGPIPVELSRI-GNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSV 453 (933)
Q Consensus 375 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 453 (933)
.++|++|++++|++++. + .+ ++|+.|++++|++++ +|.. +++|+.|++++|++++ +|. .+++|
T Consensus 296 ---~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L 359 (454)
T 1jl5_A 296 ---PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNL 359 (454)
T ss_dssp ---CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTC
T ss_pred ---CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhc
Confidence 26899999999999852 2 23 589999999999996 6654 5789999999999994 666 47899
Q ss_pred ceEEccCCcccc--ccchhhccc-------------cccceeeecCCCCcC
Q 002349 454 MEIDLSHNHLTG--VIPEELSQL-------------QNMFSLRLDYNNLSG 489 (933)
Q Consensus 454 ~~L~Ls~N~l~~--~~p~~~~~l-------------~~L~~L~l~~N~l~~ 489 (933)
++|+|++|++++ .+|.++..+ ++|+.|++++|++++
T Consensus 360 ~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred cEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 999999999999 889999988 899999999999998
No 52
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=3.6e-41 Score=370.42 Aligned_cols=249 Identities=21% Similarity=0.292 Sum_probs=208.5
Q ss_pred hhccCcceeeecccceeEEEEEE-cCCceEEEEEeccc--CchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVL-KNCKPVAIKRLYSH--YPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
.++|+..+.||+|+||.||+|.+ .+++.||||++... .....+++.+|++++++++||||+++++++...+..++||
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 93 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM 93 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence 45899999999999999999997 46899999999654 2345667889999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
||+++|+|.+++. ..+.+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 94 e~~~~~~L~~~l~---~~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 167 (328)
T 3fe3_A 94 EYASGGEVFDYLV---AHGRMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEFTVG 167 (328)
T ss_dssp CCCTTCBHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSS
T ss_pred ECCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCceecCCC
Confidence 9999999999984 346799999999999999999999976 9999999999999999999999999999876432
Q ss_pred CCceeeeecccccccCccccccCCCC-cchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYARTSRLT-EKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
. .....+||+.|+|||++.+..+. +++||||+||++|+|++|+.||.+................. +.
T Consensus 168 ~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~--------p~-- 235 (328)
T 3fe3_A 168 G--KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRI--------PF-- 235 (328)
T ss_dssp C--GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCC--------CT--
T ss_pred C--ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCC--------CC--
Confidence 2 23445799999999999988765 89999999999999999999998765443332222211111 11
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
..+..+.+++.+|++.||.+|||++|++++-
T Consensus 236 ---~~s~~~~~li~~~L~~dP~~R~t~~eil~h~ 266 (328)
T 3fe3_A 236 ---YMSTDCENLLKRFLVLNPIKRGTLEQIMKDR 266 (328)
T ss_dssp ---TSCHHHHHHHHHHCCSSTTTSCCHHHHTTCT
T ss_pred ---CCCHHHHHHHHHHCCCChhHCcCHHHHhcCH
Confidence 1235678899999999999999999998753
No 53
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=6.5e-41 Score=368.10 Aligned_cols=263 Identities=22% Similarity=0.314 Sum_probs=218.4
Q ss_pred cccCHHHHHHHhhc----------cCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCC
Q 002349 586 ALHVYEDIMRMTEN----------LSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHR 654 (933)
Q Consensus 586 ~~~~~~~~~~~~~~----------~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 654 (933)
..++++++..+++. |+..+.||+|+||.||+|+.. +++.||||++........+.+.+|+.++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 34678888888864 677789999999999999987 6899999999776666678899999999999999
Q ss_pred ceeeeeeEEecCCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeC
Q 002349 655 NLVSLQGYSLSSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLD 734 (933)
Q Consensus 655 niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~ 734 (933)
||+++++++...+..++||||+++++|.+++. ...+++..+..++.|++.||+|||++ +|+||||||+||+++
T Consensus 103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~----~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~ 175 (321)
T 2c30_A 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVS----QVRLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSILLT 175 (321)
T ss_dssp TBCCEEEEEEETTEEEEEECCCCSCBHHHHHT----TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEC
T ss_pred CcceEEEEEEECCEEEEEEecCCCCCHHHHHH----hcCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEC
Confidence 99999999999999999999999999999984 34699999999999999999999976 999999999999999
Q ss_pred CCCCeEEeecccccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhh
Q 002349 735 KDFEAHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSK 814 (933)
Q Consensus 735 ~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~ 814 (933)
.++.+||+|||+++...... .......||+.|+|||++.+..++.++||||||+++|||++|+.||.............
T Consensus 176 ~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~~ 254 (321)
T 2c30_A 176 LDGRVKLSDFGFCAQISKDV-PKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLR 254 (321)
T ss_dssp TTCCEEECCCTTCEECCSSS-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHH
T ss_pred CCCcEEEeeeeeeeecccCc-cccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHh
Confidence 99999999999998764322 22344679999999999999999999999999999999999999998665444332221
Q ss_pred hcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 815 TANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
... .+.... ....+..+.+++.+|++.||++|||++|++++-
T Consensus 255 ~~~-------~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp 296 (321)
T 2c30_A 255 DSP-------PPKLKN---SHKVSPVLRDFLERMLVRDPQERATAQELLDHP 296 (321)
T ss_dssp HSS-------CCCCTT---GGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTSG
T ss_pred cCC-------CCCcCc---cccCCHHHHHHHHHHccCChhhCcCHHHHhcCh
Confidence 111 111111 011235688999999999999999999999854
No 54
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.5e-41 Score=372.02 Aligned_cols=260 Identities=27% Similarity=0.430 Sum_probs=212.1
Q ss_pred hccCcceeeecccceeEEEEEEc----CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK----NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 672 (933)
++|+..+.||+|+||.||+|.+. .+..||||++.... ....+.+.+|++++++++||||+++++++..++..++|
T Consensus 49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 128 (325)
T 3kul_A 49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV 128 (325)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEE
T ss_pred hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEE
Confidence 57888899999999999999975 34569999997653 44567799999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
|||+++|+|.++++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 129 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 203 (325)
T 3kul_A 129 TEYMENGSLDTFLRT--HDGQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLED 203 (325)
T ss_dssp EECCTTCBHHHHHHT--TTTCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEECC-
T ss_pred eeCCCCCcHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCccccccc
Confidence 999999999999963 446799999999999999999999966 999999999999999999999999999987643
Q ss_pred CCCc--eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCcccc
Q 002349 753 SKSY--TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEIS 829 (933)
Q Consensus 753 ~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (933)
.... ......+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+............. . .....
T Consensus 204 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~-~------~~~~~ 276 (325)
T 3kul_A 204 DPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEG-Y------RLPAP 276 (325)
T ss_dssp ---CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTT-C------CCCCC
T ss_pred CccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcC-C------CCCCC
Confidence 3222 2223456788999999999999999999999999999999 99999865544333222111 0 01111
Q ss_pred ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCCC
Q 002349 830 ATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAPE 874 (933)
Q Consensus 830 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~ 874 (933)
...+..+.+++.+||+.||++|||+++|++.|+.+...++
T Consensus 277 -----~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~ 316 (325)
T 3kul_A 277 -----MGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPE 316 (325)
T ss_dssp -----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC
T ss_pred -----CCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCcc
Confidence 1224678899999999999999999999999998765443
No 55
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=6e-41 Score=358.81 Aligned_cols=258 Identities=23% Similarity=0.345 Sum_probs=215.5
Q ss_pred hhccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEec
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFM 676 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~ 676 (933)
.++|+..+.||+|+||.||+|.++++..||+|++..... ..+++.+|++++++++||||+++++++......++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI 85 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence 468899999999999999999999888999999976543 3567899999999999999999999999999999999999
Q ss_pred CCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCCc
Q 002349 677 ENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSY 756 (933)
Q Consensus 677 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~ 756 (933)
++++|.+++.. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++........
T Consensus 86 ~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~ 160 (268)
T 3sxs_A 86 SNGCLLNYLRS--HGKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYV 160 (268)
T ss_dssp TTCBHHHHHHH--HGGGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEE
T ss_pred CCCcHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecchhhhh
Confidence 99999999952 344699999999999999999999966 9999999999999999999999999999876544333
Q ss_pred eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCccccccccCH
Q 002349 757 TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDL 835 (933)
Q Consensus 757 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (933)
......+|+.|+|||.+.+..++.++||||+|+++|+|++ |+.||.................. ..+.
T Consensus 161 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~-------~~~~----- 228 (268)
T 3sxs_A 161 SSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHRL-------YRPH----- 228 (268)
T ss_dssp ECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCC-------CCCT-----
T ss_pred cccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcCCCC-------CCCC-----
Confidence 3344456788999999999889999999999999999999 99999865544433222211110 0011
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCC
Q 002349 836 GAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPA 872 (933)
Q Consensus 836 ~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 872 (933)
..+..+.+++.+|++.||++|||++|+++.|+.+...
T Consensus 229 ~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (268)
T 3sxs_A 229 LASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK 265 (268)
T ss_dssp TSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred cChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence 1135688999999999999999999999999988654
No 56
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.5e-41 Score=369.97 Aligned_cols=259 Identities=23% Similarity=0.382 Sum_probs=211.2
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEec
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFM 676 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~ 676 (933)
++|...+.||+|+||+||+|.+. +++.||+|++........+.+.+|++++++++||||+++++++.+++..++||||+
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 89 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYI 89 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEec
Confidence 57889999999999999999976 47899999997776677788999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCCc
Q 002349 677 ENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSY 756 (933)
Q Consensus 677 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~ 756 (933)
++|+|.++++. ....+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++........
T Consensus 90 ~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~ 164 (310)
T 3s95_A 90 KGGTLRGIIKS--MDSQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQ 164 (310)
T ss_dssp TTCBHHHHHHH--CCTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC-----
T ss_pred CCCcHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceeccccccc
Confidence 99999999963 356799999999999999999999966 9999999999999999999999999999876432221
Q ss_pred e-------------eeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccc
Q 002349 757 T-------------STYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMET 823 (933)
Q Consensus 757 ~-------------~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 823 (933)
. .....||+.|+|||++.+..++.++||||||+++|||++|..||........... ......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~-----~~~~~~ 239 (310)
T 3s95_A 165 PEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFG-----LNVRGF 239 (310)
T ss_dssp ---------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSS-----BCHHHH
T ss_pred ccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHh-----hhhhcc
Confidence 1 1145799999999999999999999999999999999999999864322110000 000000
Q ss_pred cCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 824 VDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 824 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
.+...+. ..+..+.+++.+|++.||++|||++++++.|+.+..
T Consensus 240 ~~~~~~~-----~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~ 282 (310)
T 3s95_A 240 LDRYCPP-----NCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRM 282 (310)
T ss_dssp HHHTCCT-----TCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ccccCCC-----CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 0000111 123468889999999999999999999999987653
No 57
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=5.1e-41 Score=359.58 Aligned_cols=255 Identities=28% Similarity=0.387 Sum_probs=213.6
Q ss_pred hccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEecC
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFME 677 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~ 677 (933)
++|+..+.||+|+||.||+|.+.+++.||+|++..... ..+++.+|++++++++||||+++++++.+++..++||||++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 88 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME 88 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCC
Confidence 57888999999999999999998889999999976543 35679999999999999999999999999999999999999
Q ss_pred CCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCCce
Q 002349 678 NGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSYT 757 (933)
Q Consensus 678 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~~ 757 (933)
+++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.........
T Consensus 89 ~~~L~~~l~~--~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~ 163 (269)
T 4hcu_A 89 HGCLSDYLRT--QRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTS 163 (269)
T ss_dssp TCBHHHHHHT--TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHS
T ss_pred CCcHHHHHHh--cCcccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEecccccccccccccccc
Confidence 9999999963 445799999999999999999999976 99999999999999999999999999998764333333
Q ss_pred eeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCccccccccCHH
Q 002349 758 STYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDLG 836 (933)
Q Consensus 758 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (933)
.....+|+.|+|||.+.+..++.++||||+|+++|+|++ |+.||................ ....+. .
T Consensus 164 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~~-------~~~~~~-----~ 231 (269)
T 4hcu_A 164 STGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGF-------RLYKPR-----L 231 (269)
T ss_dssp TTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTC-------CCCCCT-----T
T ss_pred ccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcCc-------cCCCCC-----c
Confidence 334457888999999999999999999999999999999 999998655443332221110 111111 1
Q ss_pred HHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 837 AVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 837 ~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
.+..+.+++.+|++.||++|||+++++++|+.+.
T Consensus 232 ~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~ 265 (269)
T 4hcu_A 232 ASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIA 265 (269)
T ss_dssp SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHH
Confidence 2357889999999999999999999999998754
No 58
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=1.1e-40 Score=370.82 Aligned_cols=252 Identities=22% Similarity=0.316 Sum_probs=209.9
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCch------hHHHHHHHHHHHhcCCCCceeeeeeEEecCCcc
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQ------CLKEFETELETVGSIKHRNLVSLQGYSLSSSGN 669 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 669 (933)
.++|...+.||+|+||+||+|.++ +++.||+|++...... ..+.+.+|+.++++++||||+++++++.+....
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 467999999999999999999976 4789999999764321 357799999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCC----CeEEeecc
Q 002349 670 LLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDF----EAHLTDFG 745 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~----~~kl~DfG 745 (933)
++||||+++|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++ .+||+|||
T Consensus 91 ~lv~e~~~gg~L~~~l~---~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~DFG 164 (361)
T 2yab_A 91 VLILELVSGGELFDFLA---QKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFG 164 (361)
T ss_dssp EEEEECCCSCBHHHHHT---TCSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCS
T ss_pred EEEEEcCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEecC
Confidence 99999999999999994 456799999999999999999999976 999999999999998877 79999999
Q ss_pred cccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccC
Q 002349 746 IAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVD 825 (933)
Q Consensus 746 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (933)
+++...... ......||+.|+|||++.+..++.++||||+||++|+|++|..||.+..................
T Consensus 165 ~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~---- 238 (361)
T 2yab_A 165 LAHEIEDGV--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFD---- 238 (361)
T ss_dssp SCEECCTTC--CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCC----
T ss_pred CceEcCCCC--ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCC----
Confidence 998764322 23445799999999999999999999999999999999999999987655544433222211111
Q ss_pred ccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 826 PEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 826 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
+.... ..+..+.+++.+|+..||++|||++|++++
T Consensus 239 ~~~~~-----~~s~~~~~li~~~L~~dP~~R~t~~e~l~h 273 (361)
T 2yab_A 239 EEFFS-----QTSELAKDFIRKLLVKETRKRLTIQEALRH 273 (361)
T ss_dssp HHHHT-----TSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred chhcc-----CCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 11111 113567889999999999999999999874
No 59
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1e-40 Score=361.84 Aligned_cols=262 Identities=27% Similarity=0.410 Sum_probs=209.9
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
++|+..+.||+|+||.||+|.+. .++.||+|++.... ....+.+.+|+.++++++||||+++++++..++..++||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 90 (294)
T 4eqm_A 11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVM 90 (294)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEE
Confidence 57999999999999999999976 57899999985432 334567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
||+++++|.+++. ..+++++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 91 e~~~g~~L~~~l~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 164 (294)
T 4eqm_A 91 EYIEGPTLSEYIE---SHGPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSET 164 (294)
T ss_dssp ECCCSCBHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC---
T ss_pred eCCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCccccccc
Confidence 9999999999995 345799999999999999999999976 9999999999999999999999999999876544
Q ss_pred CCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCK 833 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (933)
.........||+.|+|||.+.+..++.++||||+|+++|+|++|+.||.+.............. ... ......
T Consensus 165 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~--~~~-~~~~~~---- 237 (294)
T 4eqm_A 165 SLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDS--VPN-VTTDVR---- 237 (294)
T ss_dssp ----------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSC--CCC-HHHHSC----
T ss_pred cccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhhcc--CCC-cchhcc----
Confidence 4344445679999999999999999999999999999999999999998765444332211111 100 000111
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHHccCCCCC
Q 002349 834 DLGAVKKVFQLALLCSKRQPTDRP-TMHEVSRVLGSLVPAP 873 (933)
Q Consensus 834 ~~~~~~~l~~li~~cl~~dP~~RP-t~~evl~~L~~~~~~~ 873 (933)
...+..+.+++.+|++.||++|| +++++.+.|+.+....
T Consensus 238 -~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~ 277 (294)
T 4eqm_A 238 -KDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHEN 277 (294)
T ss_dssp -TTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSS
T ss_pred -cCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhc
Confidence 11246788999999999999998 8999999998876543
No 60
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=1.4e-40 Score=363.44 Aligned_cols=280 Identities=33% Similarity=0.567 Sum_probs=226.1
Q ss_pred cccccCHHHHHHHhhccCcc------eeeecccceeEEEEEEcCCceEEEEEecccC----chhHHHHHHHHHHHhcCCC
Q 002349 584 NMALHVYEDIMRMTENLSEK------YIIGYGASSTVYKCVLKNCKPVAIKRLYSHY----PQCLKEFETELETVGSIKH 653 (933)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~------~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h 653 (933)
....+.++++..++++|... +.||+|+||.||+|.+ +++.||||++.... ....+.+.+|++++++++|
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h 89 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH 89 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence 34568899999999999888 8999999999999987 56889999986532 3346779999999999999
Q ss_pred CceeeeeeEEecCCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEe
Q 002349 654 RNLVSLQGYSLSSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILL 733 (933)
Q Consensus 654 ~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll 733 (933)
|||+++++++...+..++||||+++++|.+++........+++..+..++.|++.||+|||++ +|+||||||+||++
T Consensus 90 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nili 166 (307)
T 2nru_A 90 ENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILL 166 (307)
T ss_dssp TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEE
T ss_pred CCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEE
Confidence 999999999999999999999999999999997544456799999999999999999999966 99999999999999
Q ss_pred CCCCCeEEeecccccccccCCCc-eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchh---H
Q 002349 734 DKDFEAHLTDFGIAKSLCVSKSY-TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLH---H 809 (933)
Q Consensus 734 ~~~~~~kl~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~---~ 809 (933)
+.++.+||+|||+++........ ......||+.|+|||.+.+ .++.++||||||+++|+|++|+.||....... .
T Consensus 167 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~ 245 (307)
T 2nru_A 167 DEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLD 245 (307)
T ss_dssp CTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTH
T ss_pred cCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHH
Confidence 99999999999999876432222 2334579999999998875 48899999999999999999999997543221 1
Q ss_pred HHHhhhc-ccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 810 LILSKTA-NNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 810 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
+...... .....+.+++.+.. .....+..+.+++.+|++.||++|||++++++.|+.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~ 305 (307)
T 2nru_A 246 IKEEIEDEEKTIEDYIDKKMND--ADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT 305 (307)
T ss_dssp HHHHHHTTSCCHHHHSCSSCSC--CCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC
T ss_pred HHHHhhhhhhhhhhhccccccc--cchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHh
Confidence 1111111 11111122222211 23456788999999999999999999999999998764
No 61
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=2e-41 Score=372.62 Aligned_cols=268 Identities=26% Similarity=0.348 Sum_probs=208.8
Q ss_pred hhccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCc----cEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSG----NLLF 672 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~----~~lv 672 (933)
.++|+..+.||+|+||+||+|++. ++.||||++.... .....+.+|+.++++++||||+++++++..... .++|
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv 100 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI 100 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence 368999999999999999999976 6899999996543 334556779999999999999999999987543 5999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-------CCCeeeccCCCCceEeCCCCCeEEeecc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDC-------SPRIIHRDVKSSNILLDKDFEAHLTDFG 745 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-------~~~ivH~Dikp~NIll~~~~~~kl~DfG 745 (933)
|||+++|+|.++++. ..+++..+..++.|++.||+|||+.+ +.+|+||||||+||+++.++.+||+|||
T Consensus 101 ~e~~~~g~L~~~l~~----~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg 176 (322)
T 3soc_A 101 TAFHEKGSLSDFLKA----NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFG 176 (322)
T ss_dssp EECCTTCBHHHHHHH----CCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCT
T ss_pred EecCCCCCHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCC
Confidence 999999999999952 45999999999999999999999420 1299999999999999999999999999
Q ss_pred cccccccCCCc-eeeeecccccccCccccccC-----CCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhh-----
Q 002349 746 IAKSLCVSKSY-TSTYIMGTIGYIDPEYARTS-----RLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSK----- 814 (933)
Q Consensus 746 la~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~-----~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~----- 814 (933)
+++........ ......||+.|+|||++.+. .++.++|||||||++|||++|+.||.+...........
T Consensus 177 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~ 256 (322)
T 3soc_A 177 LALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQH 256 (322)
T ss_dssp TCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSS
T ss_pred cccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccC
Confidence 99876433222 22335799999999999873 45678999999999999999999997543211110000
Q ss_pred -----hcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 815 -----TANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 815 -----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
...........+.+.........+..+.+++.+||+.||++|||++||++.|+.+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~ 317 (322)
T 3soc_A 257 PSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQ 317 (322)
T ss_dssp CCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 00000111222333333334456778999999999999999999999999998653
No 62
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.8e-40 Score=364.31 Aligned_cols=253 Identities=18% Similarity=0.215 Sum_probs=209.9
Q ss_pred hhccCcceeeecccceeEEEEEEcC-CceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEe
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDF 675 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 675 (933)
.++|+..+.||+|+||+||+|.+.. ++.||+|.+.... .....+.+|++++++++||||+++++++.+.+..++||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 4689999999999999999999764 7889999987543 3456789999999999999999999999999999999999
Q ss_pred cCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCC--CCCeEEeecccccccccC
Q 002349 676 MENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDK--DFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 676 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~--~~~~kl~DfGla~~~~~~ 753 (933)
+++|+|.+++. .....+++.++..++.|++.||+|||++ +|+||||||+||+++. ++.+||+|||+++.....
T Consensus 83 ~~g~~L~~~l~--~~~~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~ 157 (321)
T 1tki_A 83 ISGLDIFERIN--TSAFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG 157 (321)
T ss_dssp CCCCBHHHHHT--SSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT
T ss_pred CCCCCHHHHHH--hcCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCC
Confidence 99999999995 2345799999999999999999999966 9999999999999987 789999999999876432
Q ss_pred CCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCK 833 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (933)
.......||+.|+|||++.+..++.++||||+||++|+|++|+.||.+......................+
T Consensus 158 --~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~------- 228 (321)
T 1tki_A 158 --DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFK------- 228 (321)
T ss_dssp --CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHT-------
T ss_pred --CccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHcCCCCCChhhhc-------
Confidence 23345679999999999999889999999999999999999999998765544333222211111110000
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 834 DLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 834 ~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
..+..+.+++.+|+..||++|||+.|++++-
T Consensus 229 --~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp 259 (321)
T 1tki_A 229 --EISIEAMDFVDRLLVKERKSRMTASEALQHP 259 (321)
T ss_dssp --TSCHHHHHHHHTTSCSSGGGSCCHHHHHHSH
T ss_pred --cCCHHHHHHHHHHcCCChhHCcCHHHHhcCh
Confidence 1235788999999999999999999999844
No 63
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=2.2e-40 Score=365.06 Aligned_cols=250 Identities=21% Similarity=0.250 Sum_probs=208.5
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 672 (933)
.++|+..+.||+|+||+||+|+.+ +++.||+|++.... ....+.+.+|++++++++||||+++++++...+..++|
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv 83 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence 368999999999999999999976 58899999996542 33456788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
|||+++|+|.+++. ..+.+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 84 ~E~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 157 (337)
T 1o6l_A 84 MEYANGGELFFHLS---RERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS 157 (337)
T ss_dssp EECCTTCBHHHHHH---HHSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred EeCCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhccc
Confidence 99999999999984 346789999999999999999999966 999999999999999999999999999986422
Q ss_pred CCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccc
Q 002349 753 SKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 753 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
. .......+||+.|+|||++.+..++.++||||+||++|||++|+.||.+................ ++.
T Consensus 158 ~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~--------~p~-- 226 (337)
T 1o6l_A 158 D-GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIR--------FPR-- 226 (337)
T ss_dssp T-TCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCC--------CCT--
T ss_pred C-CCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC--------CCC--
Confidence 2 22334567999999999999999999999999999999999999999865543333222211111 111
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHHH
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRP-----TMHEVSRVL 866 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RP-----t~~evl~~L 866 (933)
..+..+.+++.+|++.||++|| +++|++++-
T Consensus 227 ---~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h~ 262 (337)
T 1o6l_A 227 ---TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHR 262 (337)
T ss_dssp ---TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSG
T ss_pred ---CCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcCC
Confidence 1235688899999999999999 899998753
No 64
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=1.2e-40 Score=373.28 Aligned_cols=259 Identities=22% Similarity=0.372 Sum_probs=211.0
Q ss_pred hhccCcceeeecccceeEEEEEEc--------CCceEEEEEecccC-chhHHHHHHHHHHHhcC-CCCceeeeeeEEecC
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK--------NCKPVAIKRLYSHY-PQCLKEFETELETVGSI-KHRNLVSLQGYSLSS 666 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~ 666 (933)
.++|...+.||+|+||.||+|.+. .+..||||+++... ....+++.+|+++++++ +||||+++++++...
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 368899999999999999999863 34579999997654 33457799999999999 899999999999999
Q ss_pred CccEEEEEecCCCCHHHHhcCCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEe
Q 002349 667 SGNLLFYDFMENGSLWDILHGPT-------------KKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILL 733 (933)
Q Consensus 667 ~~~~lv~e~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll 733 (933)
+..++||||+++|+|.+++.... ....+++.+++.++.|++.||+|||++ +|+||||||+|||+
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll 236 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLV 236 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchhhEEE
Confidence 99999999999999999996422 124589999999999999999999976 99999999999999
Q ss_pred CCCCCeEEeecccccccccCCCc-eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHH
Q 002349 734 DKDFEAHLTDFGIAKSLCVSKSY-TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLI 811 (933)
Q Consensus 734 ~~~~~~kl~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~ 811 (933)
+.++.+||+|||+++........ ......+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+........
T Consensus 237 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~~ 316 (370)
T 2psq_A 237 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFK 316 (370)
T ss_dssp CTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHH
T ss_pred CCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHH
Confidence 99999999999999866433222 1223457889999999999999999999999999999999 999998654333222
Q ss_pred HhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 812 LSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
.... .. .+..+. ..+..+.+++.+||+.||++|||+.|+++.|+.+.
T Consensus 317 ~~~~--~~-----~~~~~~-----~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il 363 (370)
T 2psq_A 317 LLKE--GH-----RMDKPA-----NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL 363 (370)
T ss_dssp HHHT--TC-----CCCCCT-----TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHhc--CC-----CCCCCC-----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 1111 11 111111 22457889999999999999999999999998754
No 65
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=1.1e-40 Score=366.31 Aligned_cols=255 Identities=22% Similarity=0.317 Sum_probs=205.5
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 674 (933)
.++|+..+.||+|+||+||+|.+. +++.||||++.... ....+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 85 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence 368999999999999999999977 67899999986543 2334668899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCC
Q 002349 675 FMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSK 754 (933)
Q Consensus 675 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~ 754 (933)
|+++|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.+....
T Consensus 86 ~~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 159 (323)
T 3tki_A 86 YCSGGELFDRIE---PDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNN 159 (323)
T ss_dssp CCTTEEGGGGSB---TTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred cCCCCcHHHHHh---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccceeccCC
Confidence 999999999994 456799999999999999999999966 99999999999999999999999999998653222
Q ss_pred C-ceeeeecccccccCccccccCCC-CcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccc
Q 002349 755 S-YTSTYIMGTIGYIDPEYARTSRL-TEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 755 ~-~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
. .......||+.|+|||++.+..+ +.++||||+||++|+|++|+.||...................... .
T Consensus 160 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~----~---- 231 (323)
T 3tki_A 160 RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP----W---- 231 (323)
T ss_dssp EECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTSTT----G----
T ss_pred cccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCCc----c----
Confidence 1 22334679999999999988775 789999999999999999999998654432222211111111100 0
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHc
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLG 867 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~ 867 (933)
...+..+.+++.+|++.||++|||++|++++-.
T Consensus 232 --~~~~~~~~~li~~~L~~dP~~R~t~~eil~h~~ 264 (323)
T 3tki_A 232 --KKIDSAPLALLHKILVENPSARITIPDIKKDRW 264 (323)
T ss_dssp --GGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTT
T ss_pred --ccCCHHHHHHHHHHccCChhhCcCHHHHhhChh
Confidence 112356788999999999999999999987643
No 66
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=3e-40 Score=363.61 Aligned_cols=253 Identities=21% Similarity=0.307 Sum_probs=210.1
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCc------hhHHHHHHHHHHHhcCCCCceeeeeeEEecCCcc
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYP------QCLKEFETELETVGSIKHRNLVSLQGYSLSSSGN 669 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 669 (933)
.++|...+.||+|+||.||+|.++ +++.||+|++..... ...+.+.+|++++++++||||+++++++......
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 89 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV 89 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence 467999999999999999999976 478999999865432 1357899999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCC----CeEEeecc
Q 002349 670 LLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDF----EAHLTDFG 745 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~----~~kl~DfG 745 (933)
++||||+++++|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++ .+||+|||
T Consensus 90 ~lv~e~~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg 163 (326)
T 2y0a_A 90 ILILELVAGGELFDFLA---EKESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFG 163 (326)
T ss_dssp EEEEECCCSCBHHHHHT---TSSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECCCT
T ss_pred EEEEEcCCCCCHHHHHH---hcCCcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEECC
Confidence 99999999999999994 456799999999999999999999966 999999999999999887 89999999
Q ss_pred cccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccC
Q 002349 746 IAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVD 825 (933)
Q Consensus 746 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (933)
+++...... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||.+...................
T Consensus 164 ~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~--- 238 (326)
T 2y0a_A 164 LAHKIDFGN--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFED--- 238 (326)
T ss_dssp TCEECCTTS--CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHTCCCCCH---
T ss_pred CCeECCCCC--ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHhcCCCcCc---
Confidence 998764322 223457999999999999999999999999999999999999999876554443332221111111
Q ss_pred ccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 826 PEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 826 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
.... ..+..+.+++.+|++.||++|||++|++++-
T Consensus 239 -~~~~-----~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp 273 (326)
T 2y0a_A 239 -EYFS-----NTSALAKDFIRRLLVKDPKKRMTIQDSLQHP 273 (326)
T ss_dssp -HHHT-----TSCHHHHHHHHHHSCSSGGGSCCHHHHHHST
T ss_pred -cccc-----cCCHHHHHHHHHHccCChhhCCCHHHHhcCC
Confidence 1000 1135678999999999999999999999863
No 67
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=8.1e-41 Score=374.75 Aligned_cols=258 Identities=26% Similarity=0.404 Sum_probs=200.5
Q ss_pred hccCcceeeecccceeEEEEEEc----CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK----NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 672 (933)
++|+..+.||+|+||.||+|+++ .+..||||+++... ....++|.+|++++++++||||+++++++...+..++|
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 124 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIV 124 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEE
Confidence 58999999999999999999975 46789999997653 34567899999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
|||+++|+|.++++. ....+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 125 ~e~~~~~sL~~~l~~--~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 199 (373)
T 2qol_A 125 TEYMENGSLDSFLRK--HDAQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVLED 199 (373)
T ss_dssp EECCTTCBHHHHHHT--TTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred EeCCCCCcHHHHHHh--CCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCcccccccc
Confidence 999999999999963 445799999999999999999999976 999999999999999999999999999987643
Q ss_pred CCCc--eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCcccc
Q 002349 753 SKSY--TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEIS 829 (933)
Q Consensus 753 ~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (933)
.... ......+++.|+|||++.+..++.++|||||||++|||++ |+.||............. ... . ...
T Consensus 200 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~i~--~~~-~----~~~- 271 (373)
T 2qol_A 200 DPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVD--EGY-R----LPP- 271 (373)
T ss_dssp --------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHHHH--TTE-E----CCC-
T ss_pred CCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH--cCC-C----CCC-
Confidence 3221 1222345778999999999999999999999999999998 999997654433222111 110 0 000
Q ss_pred ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCC
Q 002349 830 ATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPA 872 (933)
Q Consensus 830 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 872 (933)
....+..+.+++.+||+.||++||++++|++.|+.+...
T Consensus 272 ----~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~ 310 (373)
T 2qol_A 272 ----PMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN 310 (373)
T ss_dssp ----CTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ----CccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence 112346789999999999999999999999999877543
No 68
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=3.4e-40 Score=368.08 Aligned_cols=253 Identities=23% Similarity=0.323 Sum_probs=209.2
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 672 (933)
..++|+..+.||+|+||.||+|.++ +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv 106 (362)
T 2bdw_A 27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 106 (362)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 4578999999999999999999976 47899999996543 33456789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCC---CCeEEeecccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKD---FEAHLTDFGIAKS 749 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~---~~~kl~DfGla~~ 749 (933)
|||+++|+|.+.+. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.+ +.+||+|||+++.
T Consensus 107 ~e~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~ 180 (362)
T 2bdw_A 107 FDLVTGGELFEDIV---AREFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIE 180 (362)
T ss_dssp ECCCCSCBHHHHHT---TCSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTCBC
T ss_pred EecCCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcceE
Confidence 99999999999994 456799999999999999999999976 99999999999999865 4599999999987
Q ss_pred cccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccc
Q 002349 750 LCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEIS 829 (933)
Q Consensus 750 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (933)
..... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||.+.................... ...
T Consensus 181 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~---~~~ 255 (362)
T 2bdw_A 181 VNDSE--AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSP---EWD 255 (362)
T ss_dssp CTTCC--SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTT---GGG
T ss_pred ecCCc--ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCcc---ccc
Confidence 64322 2234579999999999999999999999999999999999999998765444333222221111111 000
Q ss_pred ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 830 ATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 830 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+..+.+++.+|++.||++|||+.|++++
T Consensus 256 ------~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 256 ------TVTPEAKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp ------GSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred ------CCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 123568899999999999999999999864
No 69
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=2.2e-40 Score=357.41 Aligned_cols=256 Identities=20% Similarity=0.303 Sum_probs=210.6
Q ss_pred hhccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEec
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFM 676 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~ 676 (933)
.++|+..+.||+|+||.||+|.+++++.||+|++..... ..+++.+|++++++++||||+++++++.+.+..++||||+
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 101 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM 101 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCC
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEecc
Confidence 468899999999999999999999888999999976543 3467899999999999999999999999999999999999
Q ss_pred CCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCCc
Q 002349 677 ENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSY 756 (933)
Q Consensus 677 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~ 756 (933)
++++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++........
T Consensus 102 ~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~ 176 (283)
T 3gen_A 102 ANGCLLNYLRE--MRHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYT 176 (283)
T ss_dssp TTCBHHHHHHC--GGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHH
T ss_pred CCCcHHHHHHH--hccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEccccccccccccccc
Confidence 99999999963 345799999999999999999999976 9999999999999999999999999999876433322
Q ss_pred eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCccccccccCH
Q 002349 757 TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDL 835 (933)
Q Consensus 757 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (933)
......+|+.|+|||.+.+..++.++||||+|+++|+|++ |+.||................ ....+.
T Consensus 177 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~-------~~~~~~----- 244 (283)
T 3gen_A 177 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGL-------RLYRPH----- 244 (283)
T ss_dssp STTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTC-------CCCCCT-----
T ss_pred cccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhccc-------CCCCCC-----
Confidence 2333457788999999999999999999999999999998 999998655443332222111 111111
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 836 GAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 836 ~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
..+..+.+++.+||+.||++|||+++++++|..+.
T Consensus 245 ~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~ 279 (283)
T 3gen_A 245 LASEKVYTIMYSCWHEKADERPTFKILLSNILDVM 279 (283)
T ss_dssp TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHh
Confidence 11357889999999999999999999999997653
No 70
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=3.8e-40 Score=376.22 Aligned_cols=255 Identities=22% Similarity=0.255 Sum_probs=209.8
Q ss_pred HHhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEE
Q 002349 595 RMTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLL 671 (933)
Q Consensus 595 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 671 (933)
...++|+..+.||+|+||+||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+++..++
T Consensus 8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~l 87 (444)
T 3soa_A 8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYL 87 (444)
T ss_dssp HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEE
T ss_pred cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEE
Confidence 35678999999999999999999975 57899999987644 3345678999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeC---CCCCeEEeeccccc
Q 002349 672 FYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLD---KDFEAHLTDFGIAK 748 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~---~~~~~kl~DfGla~ 748 (933)
||||+++|+|.+.+. ....+++..+..++.|++.||+|||++ +|+||||||+||+++ .++.+||+|||+++
T Consensus 88 v~E~~~gg~L~~~i~---~~~~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~a~ 161 (444)
T 3soa_A 88 IFDLVTGGELFEDIV---AREYYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAI 161 (444)
T ss_dssp EECCCBCCBHHHHHH---HCSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSSCB
T ss_pred EEEeCCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCceeE
Confidence 999999999999985 356799999999999999999999966 999999999999998 46789999999998
Q ss_pred ccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccc
Q 002349 749 SLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEI 828 (933)
Q Consensus 749 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (933)
...... .......||+.|+|||++.+..++.++||||+||++|+|++|+.||.+......................+
T Consensus 162 ~~~~~~-~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~-- 238 (444)
T 3soa_A 162 EVEGEQ-QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWD-- 238 (444)
T ss_dssp CCCTTC-CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTTTT--
T ss_pred EecCCC-ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCCCCCCccccc--
Confidence 764322 22334679999999999999999999999999999999999999998765544443332222211111111
Q ss_pred cccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 829 SATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 829 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+..+.+++.+|++.||++|||++|++++
T Consensus 239 -------~~s~~~~~li~~~L~~dP~~Rpta~e~L~h 268 (444)
T 3soa_A 239 -------TVTPEAKDLINKMLTINPSKRITAAEALKH 268 (444)
T ss_dssp -------TSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred -------cCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 123578899999999999999999999985
No 71
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=2.8e-40 Score=361.44 Aligned_cols=262 Identities=23% Similarity=0.272 Sum_probs=205.5
Q ss_pred hhccCcceeeecccceeEEEEEEcCCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 674 (933)
.++|+..+.||+|+||+||+|.+.+++.||+|++.... ....+.+.+|++++++++||||+++++++.+++..++|||
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 99 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE 99 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence 46899999999999999999999889999999996543 2335678899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCC
Q 002349 675 FMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSK 754 (933)
Q Consensus 675 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~ 754 (933)
|+++ +|.+.+. .....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 100 ~~~~-~l~~~~~--~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~ 173 (311)
T 3niz_A 100 FMEK-DLKKVLD--ENKTGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLARAFGIPV 173 (311)
T ss_dssp CCSE-EHHHHHH--TCTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEETTSCC
T ss_pred CCCC-CHHHHHH--hccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCceecCCCc
Confidence 9985 8888886 3445699999999999999999999966 99999999999999999999999999998764322
Q ss_pred CceeeeecccccccCcccccc-CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccc---
Q 002349 755 SYTSTYIMGTIGYIDPEYART-SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISA--- 830 (933)
Q Consensus 755 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 830 (933)
.......||+.|+|||++.+ ..++.++||||+||++|+|++|+.||.+..............+.......+....
T Consensus 174 -~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 252 (311)
T 3niz_A 174 -RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPL 252 (311)
T ss_dssp -C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHH
T ss_pred -ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccch
Confidence 22334578999999999876 5689999999999999999999999986555444433222111111000000000
Q ss_pred --------cc-cC-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 831 --------TC-KD-----LGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 831 --------~~-~~-----~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
.. .. .....++.+++.+|++.||++|||++|++++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 301 (311)
T 3niz_A 253 WKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNH 301 (311)
T ss_dssp HHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred hhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 00 00 0123578899999999999999999999974
No 72
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=6.2e-40 Score=368.20 Aligned_cols=254 Identities=20% Similarity=0.301 Sum_probs=211.8
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEe
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDF 675 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 675 (933)
.++|+..+.||+|+||.||+|.++ +++.||+|++..........+.+|++++++++||||+++++++.+....++||||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~ 129 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF 129 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence 467999999999999999999976 5788999999776655667899999999999999999999999999999999999
Q ss_pred cCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCC--CCCeEEeecccccccccC
Q 002349 676 MENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDK--DFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 676 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~--~~~~kl~DfGla~~~~~~ 753 (933)
+++|+|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++. .+.+||+|||+++.....
T Consensus 130 ~~gg~L~~~l~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~ 204 (387)
T 1kob_A 130 LSGGELFDRIAA--EDYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD 204 (387)
T ss_dssp CCCCBHHHHTTC--TTCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTT
T ss_pred CCCCcHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceecCCC
Confidence 999999999952 345799999999999999999999966 9999999999999974 477999999999876433
Q ss_pred CCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCK 833 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (933)
. ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+.................... ...
T Consensus 205 ~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~~~~~~----~~~--- 275 (387)
T 1kob_A 205 E--IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDED----AFS--- 275 (387)
T ss_dssp S--CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSS----TTT---
T ss_pred c--ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcc----ccc---
Confidence 2 2334579999999999999999999999999999999999999998766544443322221111111 100
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 834 DLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 834 ~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
..+..+.+++.+||+.||++|||++|++++-
T Consensus 276 --~~s~~~~~li~~~L~~dP~~Rpt~~ell~hp 306 (387)
T 1kob_A 276 --SVSPEAKDFIKNLLQKEPRKRLTVHDALEHP 306 (387)
T ss_dssp --TSCHHHHHHHHTTSCSSGGGSCCHHHHHTST
T ss_pred --cCCHHHHHHHHHHcCCChhHCcCHHHHhhCc
Confidence 1235788999999999999999999999853
No 73
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=1.4e-40 Score=383.25 Aligned_cols=261 Identities=25% Similarity=0.398 Sum_probs=214.9
Q ss_pred hhccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEec
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFM 676 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~ 676 (933)
.++|...+.||+|+||.||+|.+++++.||||+++... ...+.|.+|++++++++|||||++++++. .+..++||||+
T Consensus 187 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~~ 264 (454)
T 1qcf_A 187 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEFM 264 (454)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECCC
T ss_pred hHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEeec
Confidence 46888899999999999999999888999999997654 34678999999999999999999999986 66789999999
Q ss_pred CCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCCc
Q 002349 677 ENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSY 756 (933)
Q Consensus 677 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~ 756 (933)
++|+|.++++.. ....+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+++........
T Consensus 265 ~~g~L~~~l~~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~ 340 (454)
T 1qcf_A 265 AKGSLLDFLKSD-EGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYT 340 (454)
T ss_dssp TTCBHHHHHHSH-HHHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHH
T ss_pred CCCcHHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCcee
Confidence 999999999631 123689999999999999999999966 9999999999999999999999999999876432222
Q ss_pred eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCccccccccCH
Q 002349 757 TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDL 835 (933)
Q Consensus 757 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (933)
......+++.|+|||++.+..++.++|||||||++|||++ |+.||.+............ .. ....+ .
T Consensus 341 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~-~~------~~~~~-----~ 408 (454)
T 1qcf_A 341 AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALER-GY------RMPRP-----E 408 (454)
T ss_dssp TTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHH-TC------CCCCC-----T
T ss_pred ccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHc-CC------CCCCC-----C
Confidence 2233456789999999999999999999999999999999 9999986544333222111 11 11111 1
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCCCC
Q 002349 836 GAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAPEP 875 (933)
Q Consensus 836 ~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~ 875 (933)
.++..+.+++.+||+.||++|||+++|++.|+.+..+...
T Consensus 409 ~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~~~ 448 (454)
T 1qcf_A 409 NCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTATES 448 (454)
T ss_dssp TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSSCC
T ss_pred CCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhcccc
Confidence 2346789999999999999999999999999998765543
No 74
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=1.1e-40 Score=376.36 Aligned_cols=261 Identities=22% Similarity=0.212 Sum_probs=212.2
Q ss_pred HHHHHHhhccCcceeeecccceeEEEEEEcC-CceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecC
Q 002349 591 EDIMRMTENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSS 666 (933)
Q Consensus 591 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 666 (933)
.++....++|+..+.||+|+||+||+|+++. ++.||+|++.... ....+.+.+|+.+++.++|||||++++++.++
T Consensus 62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~ 141 (410)
T 3v8s_A 62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD 141 (410)
T ss_dssp HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEEC
Confidence 3444556899999999999999999999874 7889999986532 12234578999999999999999999999999
Q ss_pred CccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccc
Q 002349 667 SGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGI 746 (933)
Q Consensus 667 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGl 746 (933)
+..++||||+++|+|.++++ ...+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+
T Consensus 142 ~~~~lV~E~~~gg~L~~~l~----~~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFG~ 214 (410)
T 3v8s_A 142 RYLYMVMEYMPGGDLVNLMS----NYDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGT 214 (410)
T ss_dssp SEEEEEECCCTTEEHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred CEEEEEEeCCCCCcHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEeccce
Confidence 99999999999999999995 24689999999999999999999966 999999999999999999999999999
Q ss_pred ccccccCCCceeeeecccccccCccccccCC----CCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccccc
Q 002349 747 AKSLCVSKSYTSTYIMGTIGYIDPEYARTSR----LTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVME 822 (933)
Q Consensus 747 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 822 (933)
|+.............+||+.|+|||++.+.. ++.++|||||||++|||++|+.||.+..................-
T Consensus 215 a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~ 294 (410)
T 3v8s_A 215 CMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTF 294 (410)
T ss_dssp CEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCC
T ss_pred eEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHHHhccccccC
Confidence 9876544333444678999999999998765 789999999999999999999999876554443332221111110
Q ss_pred ccCccccccccCHHHHHHHHHHHHHccCCCCCC--CCCHHHHHHHHc
Q 002349 823 TVDPEISATCKDLGAVKKVFQLALLCSKRQPTD--RPTMHEVSRVLG 867 (933)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~--RPt~~evl~~L~ 867 (933)
.... ..+..+.+++.+|+..+|.+ ||+++||+++-.
T Consensus 295 p~~~---------~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~Hp~ 332 (410)
T 3v8s_A 295 PDDN---------DISKEAKNLICAFLTDREVRLGRNGVEEIKRHLF 332 (410)
T ss_dssp CTTC---------CCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTSGG
T ss_pred CCcc---------cccHHHHHHHHHHccChhhhCCCCCHHHHhcCcc
Confidence 0000 12356888999999999988 999999998643
No 75
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=2.1e-40 Score=381.33 Aligned_cols=265 Identities=28% Similarity=0.398 Sum_probs=212.0
Q ss_pred hhccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEec
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFM 676 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~ 676 (933)
.++|+..+.||+|+||.||+|.++++..||||+++... ...++|.+|++++++++||||+++++++.. +..++||||+
T Consensus 183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~ 260 (452)
T 1fmk_A 183 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYM 260 (452)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCC
T ss_pred hhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehhh
Confidence 46788899999999999999999988889999997654 235789999999999999999999999876 6789999999
Q ss_pred CCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCCc
Q 002349 677 ENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSY 756 (933)
Q Consensus 677 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~ 756 (933)
++|+|.++++. .....+++.++..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+++........
T Consensus 261 ~~gsL~~~l~~-~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~ 336 (452)
T 1fmk_A 261 SKGSLLDFLKG-ETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT 336 (452)
T ss_dssp TTCBHHHHHSH-HHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC--------
T ss_pred cCCCHHHHHHh-cCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccceecCCCcee
Confidence 99999999952 1234689999999999999999999966 9999999999999999999999999999876433333
Q ss_pred eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCccccccccCH
Q 002349 757 TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDL 835 (933)
Q Consensus 757 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (933)
......+++.|+|||.+.+..++.++|||||||++|||++ |+.||.+............ + .....+ .
T Consensus 337 ~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~--~-----~~~~~~-----~ 404 (452)
T 1fmk_A 337 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER--G-----YRMPCP-----P 404 (452)
T ss_dssp ------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHT--T-----CCCCCC-----T
T ss_pred cccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHc--C-----CCCCCC-----C
Confidence 3334567889999999999999999999999999999999 9999986554333222111 1 011111 1
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCCCCCCCC
Q 002349 836 GAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAPEPQKQP 879 (933)
Q Consensus 836 ~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~~~~~ 879 (933)
.++..+.+++.+||+.||++|||++++++.|+.+.....++.++
T Consensus 405 ~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~~~~~~ 448 (452)
T 1fmk_A 405 ECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQP 448 (452)
T ss_dssp TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCCCCCC
T ss_pred CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCCccccc
Confidence 23467889999999999999999999999999988766665543
No 76
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=3.4e-40 Score=356.91 Aligned_cols=261 Identities=21% Similarity=0.285 Sum_probs=204.1
Q ss_pred hccCcceeeecccceeEEEEEEcCCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEe
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDF 675 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 675 (933)
++|+..+.||+|+||+||+|....++.||+|++.... ....+.+.+|++++++++||||+++++++..++..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 5788999999999999999999888999999996543 22347788999999999999999999999999999999999
Q ss_pred cCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCC
Q 002349 676 MENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKS 755 (933)
Q Consensus 676 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~ 755 (933)
+++ +|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~~-~l~~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~- 154 (288)
T 1ob3_A 82 LDQ-DLKKLLDV--CEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPV- 154 (288)
T ss_dssp CSE-EHHHHHHT--STTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---
T ss_pred cCC-CHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccccccCccc-
Confidence 985 89998863 346799999999999999999999966 99999999999999999999999999998754322
Q ss_pred ceeeeecccccccCccccccC-CCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccccc----------cc
Q 002349 756 YTSTYIMGTIGYIDPEYARTS-RLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVME----------TV 824 (933)
Q Consensus 756 ~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~----------~~ 824 (933)
.......||+.|+|||++.+. .++.++||||+||++|||++|+.||.+..............+.... ..
T Consensus 155 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (288)
T 1ob3_A 155 RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKY 234 (288)
T ss_dssp -------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhccccc
Confidence 222345789999999999764 5899999999999999999999999876554443332211110000 00
Q ss_pred Cccccccc------cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 825 DPEISATC------KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 825 ~~~~~~~~------~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
++.+.... .....+..+.+++.+|++.||++|||++|++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 281 (288)
T 1ob3_A 235 DPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH 281 (288)
T ss_dssp CTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 01000000 000124678899999999999999999999874
No 77
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.8e-40 Score=395.77 Aligned_cols=417 Identities=22% Similarity=0.204 Sum_probs=347.3
Q ss_pred cEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhc
Q 002349 69 TVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILK 148 (933)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 148 (933)
..+.|||++|.|++..+.+|.++++|++|+|++|+|++..+..|+++++|++|+|++|++++..+..|+++++|++|+|+
T Consensus 77 ~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls 156 (635)
T 4g8a_A 77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 156 (635)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccc
Confidence 67899999999998778899999999999999999997666789999999999999999998777789999999999999
Q ss_pred ccCccC-CCCcccccCCCCceeeeecCCCCCCcccccccCCCCc----EEeccCccccCccCcCCcCCCCCcEEcccccc
Q 002349 149 NNQLIG-PIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLW----YFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQ 223 (933)
Q Consensus 149 ~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~ 223 (933)
+|.+++ .+|..++.+++|++|+|++|++++..+..+..+.+++ .++++.|.++...+..+ ....++.+++++|.
T Consensus 157 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 157 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNF 235 (635)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCC
T ss_pred cCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhccc
Confidence 999976 4688899999999999999999988888887665543 57778887764333322 22233334443332
Q ss_pred ccC-----------------------------------------------------------------------------
Q 002349 224 LSG----------------------------------------------------------------------------- 226 (933)
Q Consensus 224 l~~----------------------------------------------------------------------------- 226 (933)
.+.
T Consensus 236 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 315 (635)
T 4g8a_A 236 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS 315 (635)
T ss_dssp SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred ccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence 110
Q ss_pred ----cCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCC--CCC
Q 002349 227 ----EIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTG--HIP 300 (933)
Q Consensus 227 ----~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p 300 (933)
.++.......++.|++.+|.+....+. .+..|+.++++.|.+... ....++++|+.|++++|.+.. ..+
T Consensus 316 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~ 390 (635)
T 4g8a_A 316 VTIERVKDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCS 390 (635)
T ss_dssp CEEEECGGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECC
T ss_pred cccccccccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccc
Confidence 000000112467788888887755443 467889999999987743 345578999999999999863 445
Q ss_pred CccccCCcceEeeeccccccccCCccccccccccccccccccCCCCC-CCCcccCCCCCceeccCcccCCCCCccccccc
Q 002349 301 PELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPI-PDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLE 379 (933)
Q Consensus 301 ~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 379 (933)
..+..+.+|++|++..|.+. ..+..+..+++|+.+++..|+..... +..+..+.+++.+++++|++.+..+..+..++
T Consensus 391 ~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~ 469 (635)
T 4g8a_A 391 QSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 469 (635)
T ss_dssp HHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred cchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccch
Confidence 66778899999999999998 45667889999999999988876544 45688999999999999999999999999999
Q ss_pred ccceecCCcccc-cCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEc
Q 002349 380 SMTYLNLSLNNI-RGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDL 458 (933)
Q Consensus 380 ~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 458 (933)
+|+.|+|++|.+ .+..|..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|.++++|++|||
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 999999999985 4467888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccchhhccc-cccceeeecCCCCcCccc
Q 002349 459 SHNHLTGVIPEELSQL-QNMFSLRLDYNNLSGDVM 492 (933)
Q Consensus 459 s~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~~ 492 (933)
++|+|++..|..+..+ ++|+.|+|++|+|+|...
T Consensus 550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999998 689999999999999754
No 78
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.1e-40 Score=367.72 Aligned_cols=250 Identities=22% Similarity=0.256 Sum_probs=203.2
Q ss_pred HhhccCcceeeecccceeEEEEEEcC-CceEEEEEecccC---chhHHHHHHHHHHHhcC-CCCceeeeeeEEecCCccE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY---PQCLKEFETELETVGSI-KHRNLVSLQGYSLSSSGNL 670 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~ 670 (933)
..++|+..+.||+|+||+||+|+++. ++.||||++.... ....+.+.+|.++++.+ +||||+++++++.+.+..+
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 100 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF 100 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence 34789999999999999999999764 7899999997542 23456678899999988 7999999999999999999
Q ss_pred EEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccc
Q 002349 671 LFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSL 750 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~ 750 (933)
+||||+++|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+|+..
T Consensus 101 lv~E~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~~~ 174 (353)
T 3txo_A 101 FVMEFVNGGDLMFHIQ---KSRRFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEG 174 (353)
T ss_dssp EEEECCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCS
T ss_pred EEEeCCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccceeec
Confidence 9999999999999995 346799999999999999999999976 9999999999999999999999999999854
Q ss_pred ccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccc
Q 002349 751 CVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISA 830 (933)
Q Consensus 751 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (933)
.. ........+||+.|+|||++.+..++.++||||+||++|||++|+.||.+................. +.
T Consensus 175 ~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~--------p~ 245 (353)
T 3txo_A 175 IC-NGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVY--------PT 245 (353)
T ss_dssp CC----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCC--------CT
T ss_pred cc-CCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCC--------CC
Confidence 22 2223445689999999999999899999999999999999999999998765544433332221111 11
Q ss_pred cccCHHHHHHHHHHHHHccCCCCCCCCCH------HHHHHH
Q 002349 831 TCKDLGAVKKVFQLALLCSKRQPTDRPTM------HEVSRV 865 (933)
Q Consensus 831 ~~~~~~~~~~l~~li~~cl~~dP~~RPt~------~evl~~ 865 (933)
. ....+.+++.+|++.||++||++ +|++++
T Consensus 246 ~-----~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~h 281 (353)
T 3txo_A 246 W-----LHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRH 281 (353)
T ss_dssp T-----SCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTS
T ss_pred C-----CCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhC
Confidence 1 13567889999999999999998 777753
No 79
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=7e-40 Score=357.44 Aligned_cols=260 Identities=30% Similarity=0.447 Sum_probs=206.1
Q ss_pred hccCcceeeecccceeEEEEEEcCCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEe
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDF 675 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 675 (933)
++|...+.||+|+||+||+|.+.. .+|+|+++... ....+.+.+|++++++++||||+++++++. .+..++||||
T Consensus 36 ~~~~~~~~lG~G~~g~Vy~~~~~~--~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e~ 112 (307)
T 3lb7_A 36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQW 112 (307)
T ss_dssp TSCCEEEEEEECSSCEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEEC
T ss_pred cceEEEeEecCCCCeEEEEEEECC--EEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEEec
Confidence 578999999999999999998654 58999886543 345577999999999999999999999875 4568999999
Q ss_pred cCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc-CC
Q 002349 676 MENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV-SK 754 (933)
Q Consensus 676 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~-~~ 754 (933)
+++++|.++++. ....+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.... ..
T Consensus 113 ~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~~ 187 (307)
T 3lb7_A 113 CEGSSLYKHLHV--QETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG 187 (307)
T ss_dssp CSSCBHHHHHHT--SCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCSSSEEECTTSCEEECCCCSSCC------
T ss_pred CCCCcHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCChhhEEEcCCCCEEEccCCCceecccccc
Confidence 999999999963 456799999999999999999999976 999999999999999999999999999976532 12
Q ss_pred CceeeeecccccccCccccc---cCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccc
Q 002349 755 SYTSTYIMGTIGYIDPEYAR---TSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISAT 831 (933)
Q Consensus 755 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (933)
........||+.|+|||++. +..++.++|||||||++|||++|+.||.................. .+.....
T Consensus 188 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~-----~~~~~~~ 262 (307)
T 3lb7_A 188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYA-----SPDLSKL 262 (307)
T ss_dssp ------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTCC-----CCCSTTS
T ss_pred cccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHHHHHHhcCCC-----Ccchhhh
Confidence 22233457999999999986 567899999999999999999999999876555444332221111 1111111
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCC
Q 002349 832 CKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPA 872 (933)
Q Consensus 832 ~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 872 (933)
.. .++..+.+++.+|++.||++||++.|+++.|+.+...
T Consensus 263 ~~--~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~ 301 (307)
T 3lb7_A 263 YK--NCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHS 301 (307)
T ss_dssp CS--SSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTT
T ss_pred hc--CCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhh
Confidence 11 1246788999999999999999999999999876543
No 80
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=2.1e-40 Score=372.55 Aligned_cols=257 Identities=24% Similarity=0.346 Sum_probs=209.5
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 674 (933)
.++|...+.||+|+||.||+|.++ +++.||||+++... ....++|.+|++++++++||||+++++++..++..++|||
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 192 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME 192 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEE
Confidence 357888999999999999999987 67899999987653 2334568899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCC
Q 002349 675 FMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSK 754 (933)
Q Consensus 675 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~ 754 (933)
|+++|+|.++++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 193 ~~~~g~L~~~l~~--~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~ 267 (377)
T 3cbl_A 193 LVQGGDFLTFLRT--EGARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREEADGV 267 (377)
T ss_dssp CCTTCBHHHHHHH--HGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECTTSE
T ss_pred cCCCCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceecCCCc
Confidence 9999999999962 345689999999999999999999966 99999999999999999999999999998643221
Q ss_pred Ccee-eeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCccccccc
Q 002349 755 SYTS-TYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 755 ~~~~-~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
.... ....+++.|+|||.+.+..++.++|||||||++|||++ |+.||.+............ .. ....+.
T Consensus 268 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~~--~~-----~~~~~~-- 338 (377)
T 3cbl_A 268 YAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEK--GG-----RLPCPE-- 338 (377)
T ss_dssp EECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHT--TC-----CCCCCT--
T ss_pred eeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHc--CC-----CCCCCC--
Confidence 1111 11235778999999999899999999999999999998 9999986544333222111 11 011111
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
.++..+.+++.+||+.||++|||++++++.|+.+.
T Consensus 339 ---~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~ 373 (377)
T 3cbl_A 339 ---LCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIR 373 (377)
T ss_dssp ---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 12457889999999999999999999999997653
No 81
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=4e-40 Score=356.62 Aligned_cols=254 Identities=22% Similarity=0.323 Sum_probs=206.6
Q ss_pred hccCcceeeecccceeEEEEEEcC-C-------ceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCcc
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKN-C-------KPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGN 669 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~-~-------~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 669 (933)
++|...+.||+|+||+||+|.+.. + +.||+|++........+.+.+|++++++++||||+++++++..++..
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (289)
T 4fvq_A 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDEN 87 (289)
T ss_dssp GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCC
T ss_pred hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCC
Confidence 578899999999999999999664 2 46999999776666778899999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCC--------eEE
Q 002349 670 LLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFE--------AHL 741 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~--------~kl 741 (933)
++||||+++|+|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++. +||
T Consensus 88 ~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl 162 (289)
T 4fvq_A 88 ILVQEFVKFGSLDTYLKK--NKNCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPFIKL 162 (289)
T ss_dssp EEEEECCTTCBHHHHHHH--TGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCEEEE
T ss_pred EEEEECCCCCCHHHHHHh--CCCCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCcccccccceeee
Confidence 999999999999999963 334599999999999999999999966 9999999999999998887 999
Q ss_pred eecccccccccCCCceeeeecccccccCcccccc-CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccc
Q 002349 742 TDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYART-SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAV 820 (933)
Q Consensus 742 ~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~ 820 (933)
+|||++...... ....||+.|+|||++.+ ..++.++||||+|+++|||++|..|+...................
T Consensus 163 ~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~ 237 (289)
T 4fvq_A 163 SDPGISITVLPK-----DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQL 237 (289)
T ss_dssp CCCCSCTTTSCH-----HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCC
T ss_pred ccCcccccccCc-----cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhhccCCC
Confidence 999999764321 23458899999999987 678999999999999999999665554443333322222111111
Q ss_pred ccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCCC
Q 002349 821 METVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAPE 874 (933)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~ 874 (933)
.. .. +..+.+++.+||+.||++|||++|+++.|+.+.....
T Consensus 238 ~~----~~---------~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~~ 278 (289)
T 4fvq_A 238 PA----PK---------AAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDL 278 (289)
T ss_dssp CC----CS---------SCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC----
T ss_pred CC----CC---------CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCC
Confidence 11 11 2357789999999999999999999999999876443
No 82
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=2e-40 Score=362.94 Aligned_cols=257 Identities=24% Similarity=0.384 Sum_probs=198.9
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCcc---
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGN--- 669 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~--- 669 (933)
.++|+..+.||+|+||.||+|++. +++.||||++.... ......+.+|++++++++||||+++++++......
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 368999999999999999999974 57899999997643 23456789999999999999999999998766544
Q ss_pred -EEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccc
Q 002349 670 -LLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAK 748 (933)
Q Consensus 670 -~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~ 748 (933)
++||||+++++|.++++ ..+.+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 91 ~~lv~e~~~g~~L~~~l~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~ 164 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVH---TEGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIAR 164 (311)
T ss_dssp EEEEEECCCEEEHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC-
T ss_pred cEEEEecCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCcc
Confidence 99999999999999995 345799999999999999999999976 99999999999999999999999999998
Q ss_pred ccccCCC--ceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCc
Q 002349 749 SLCVSKS--YTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDP 826 (933)
Q Consensus 749 ~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (933)
....... .......||+.|+|||++.+..++.++||||||+++|||++|+.||.+.....................
T Consensus 165 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~-- 242 (311)
T 3ork_A 165 AIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSAR-- 242 (311)
T ss_dssp -----------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCHHHH--
T ss_pred cccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCCCcccc--
Confidence 7643222 223345799999999999999999999999999999999999999987654443322221111111000
Q ss_pred cccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH-HHcc
Q 002349 827 EISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSR-VLGS 868 (933)
Q Consensus 827 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~-~L~~ 868 (933)
....+..+.+++.+||+.||++||++.++++ .+..
T Consensus 243 -------~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~ 278 (311)
T 3ork_A 243 -------HEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVR 278 (311)
T ss_dssp -------STTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred -------cCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHH
Confidence 0112457889999999999999997666554 4433
No 83
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=9.2e-40 Score=350.17 Aligned_cols=253 Identities=28% Similarity=0.427 Sum_probs=197.2
Q ss_pred hccCcceeeecccceeEEEEEEcCCceEEEEEecccC----chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHY----PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
++|+..+.||+|+||.||+|.+. ++.||||+++... ....+.+.+|+++++.++||||+++++++..++..++||
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM 85 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence 57889999999999999999976 6889999986543 233567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCC--------CCCeEEeecc
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDK--------DFEAHLTDFG 745 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~--------~~~~kl~DfG 745 (933)
||+++++|.+++. ...+++..+..++.|++.||+|||++...+|+||||||+||+++. ++.+||+|||
T Consensus 86 e~~~~~~L~~~~~----~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg 161 (271)
T 3dtc_A 86 EFARGGPLNRVLS----GKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFG 161 (271)
T ss_dssp ECCTTEEHHHHHT----SSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCC
T ss_pred EcCCCCCHHHHhh----cCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCC
Confidence 9999999999984 457999999999999999999999761122999999999999986 6789999999
Q ss_pred cccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccC
Q 002349 746 IAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVD 825 (933)
Q Consensus 746 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (933)
+++...... .....||+.|+|||.+.+..+++++||||+|+++|+|++|+.||.+.............. . .
T Consensus 162 ~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~--~----~ 232 (271)
T 3dtc_A 162 LAREWHRTT---KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNK--L----A 232 (271)
T ss_dssp C----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSC--C----C
T ss_pred ccccccccc---ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCC--C----C
Confidence 998653322 224579999999999999999999999999999999999999998655443332221111 1 1
Q ss_pred ccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccC
Q 002349 826 PEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSL 869 (933)
Q Consensus 826 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~ 869 (933)
...+. ..+..+.+++.+|++.||++|||++|++++|+.+
T Consensus 233 ~~~~~-----~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 233 LPIPS-----TCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp CCCCT-----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred CCCCc-----ccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 11111 1235788999999999999999999999999753
No 84
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=5.3e-40 Score=354.06 Aligned_cols=256 Identities=24% Similarity=0.345 Sum_probs=198.0
Q ss_pred hhccCcceeeecccceeEEEEEEcC----CceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKN----CKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLL 671 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 671 (933)
.++|+..+.||+|+||.||+|.+.. +..||+|++.... ....+.+.+|+.++++++||||+++++++. .+..++
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~l 92 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI 92 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEE
Confidence 4688999999999999999999753 4569999987643 344567899999999999999999999984 567899
Q ss_pred EEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 672 FYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
||||+++++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 93 v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 167 (281)
T 1mp8_A 93 IMELCTLGELRSFLQV--RKYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYME 167 (281)
T ss_dssp EEECCTTEEHHHHHHH--TTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC--------
T ss_pred EEecCCCCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECccccccccC
Confidence 9999999999999963 345799999999999999999999976 99999999999999999999999999998765
Q ss_pred cCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCccccc
Q 002349 752 VSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEISA 830 (933)
Q Consensus 752 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (933)
...........+|+.|+|||.+.+..++.++||||||+++|||++ |..||.+.............. . .....
T Consensus 168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~~i~~~~--~-----~~~~~ 240 (281)
T 1mp8_A 168 DSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGE--R-----LPMPP 240 (281)
T ss_dssp -----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTC--C-----CCCCT
T ss_pred cccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHcCC--C-----CCCCC
Confidence 443333444567889999999999999999999999999999997 999998655443332221111 0 11111
Q ss_pred cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 831 TCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 831 ~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
..+..+.+++.+|++.||++|||+.|+++.|+.+.
T Consensus 241 -----~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~ 275 (281)
T 1mp8_A 241 -----NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTIL 275 (281)
T ss_dssp -----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 12467889999999999999999999999987653
No 85
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=8.8e-40 Score=349.47 Aligned_cols=255 Identities=28% Similarity=0.377 Sum_probs=212.1
Q ss_pred hccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEecC
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFME 677 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~ 677 (933)
++|+..+.||+|+||.||+|.+.+++.||+|++..... ..+.+.+|++++++++||||+++++++..++..++||||++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 86 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFME 86 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCT
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCC
Confidence 57888999999999999999998888999999976543 34678999999999999999999999999999999999999
Q ss_pred CCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCCce
Q 002349 678 NGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSYT 757 (933)
Q Consensus 678 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~~ 757 (933)
+++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.........
T Consensus 87 ~~~L~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~ 161 (267)
T 3t9t_A 87 HGCLSDYLRT--QRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTS 161 (267)
T ss_dssp TCBHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHS
T ss_pred CCcHHHHHhh--CcccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEcccccccccccccccc
Confidence 9999999963 345789999999999999999999966 99999999999999999999999999998754322222
Q ss_pred eeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCccccccccCHH
Q 002349 758 STYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDLG 836 (933)
Q Consensus 758 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (933)
.....+++.|+|||++.+..++.++||||+|+++|+|++ |+.||................ ....+. .
T Consensus 162 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~~-------~~~~~~-----~ 229 (267)
T 3t9t_A 162 STGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGF-------RLYKPR-----L 229 (267)
T ss_dssp TTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTC-------CCCCCT-----T
T ss_pred cccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcCC-------cCCCCc-----c
Confidence 233457889999999999999999999999999999999 899998654433322211110 011111 1
Q ss_pred HHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 837 AVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 837 ~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
.+..+.+++.+|++.||++|||++++++.|+.+.
T Consensus 230 ~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~ 263 (267)
T 3t9t_A 230 ASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIA 263 (267)
T ss_dssp SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 2357889999999999999999999999998754
No 86
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=7.8e-40 Score=356.51 Aligned_cols=257 Identities=25% Similarity=0.364 Sum_probs=201.2
Q ss_pred hhccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhc--CCCCceeeeeeEEec----CCccE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGS--IKHRNLVSLQGYSLS----SSGNL 670 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~~----~~~~~ 670 (933)
.++|+..+.||+|+||+||+|.+ +++.||||++... ....+.+|.+++.. ++||||+++++++.. ....+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~ 82 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence 46899999999999999999998 5789999998653 23455666666666 799999999998654 34578
Q ss_pred EEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhh--------cCCCCCeeeccCCCCceEeCCCCCeEEe
Q 002349 671 LFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLH--------HDCSPRIIHRDVKSSNILLDKDFEAHLT 742 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~Dikp~NIll~~~~~~kl~ 742 (933)
+||||+++|+|.++++ ...+++..+..++.|++.||+||| +. +|+||||||+||+++.++.+||+
T Consensus 83 lv~e~~~~g~L~~~l~----~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~kl~ 155 (301)
T 3q4u_A 83 LITHYHEMGSLYDYLQ----LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQCCIA 155 (301)
T ss_dssp EEECCCTTCBHHHHHT----TCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCEEEC
T ss_pred EehhhccCCCHHHHHh----hcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCEEEe
Confidence 9999999999999994 357999999999999999999999 55 99999999999999999999999
Q ss_pred ecccccccccCCCce---eeeecccccccCccccccC------CCCcchhhHHHHHHHHHHHhC----------CCCCCC
Q 002349 743 DFGIAKSLCVSKSYT---STYIMGTIGYIDPEYARTS------RLTEKSDVYSFGIVLLELLTG----------RKAVDN 803 (933)
Q Consensus 743 DfGla~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~------~~~~~~DvwSlGv~l~elltg----------~~p~~~ 803 (933)
|||+|+......... .....||+.|+|||++.+. .+++++|||||||++|||++| +.||..
T Consensus 156 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~ 235 (301)
T 3q4u_A 156 DLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYD 235 (301)
T ss_dssp CCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTT
T ss_pred eCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccc
Confidence 999998664333222 2234799999999999876 455799999999999999999 888864
Q ss_pred Ccc----hhHHHHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccC
Q 002349 804 ECN----LHHLILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSL 869 (933)
Q Consensus 804 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~ 869 (933)
... ......... .....+..+........+..+.+++.+||+.||++|||++||++.|+.+
T Consensus 236 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 236 VVPNDPSFEDMRKVVC-----VDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp TSCSSCCHHHHHHHHT-----TSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred cCCCCcchhhhhHHHh-----ccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 221 111111111 1111222222222234678899999999999999999999999998753
No 87
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=355.53 Aligned_cols=266 Identities=19% Similarity=0.242 Sum_probs=209.3
Q ss_pred hccCcceeeecccceeEEEEEEcC-CceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCC--ccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSS--GNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~lv~ 673 (933)
++|...+.||+|+||+||+|.+.. ++.||||++.... ....+.+.+|++++++++||||+++++++.... ..++||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM 88 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence 578999999999999999999875 7899999997543 334677889999999999999999999988765 679999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEe----CCCCCeEEeecccccc
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILL----DKDFEAHLTDFGIAKS 749 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll----~~~~~~kl~DfGla~~ 749 (933)
||+++++|.+++........+++..+..++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||+++.
T Consensus 89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~ 165 (319)
T 4euu_A 89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE 165 (319)
T ss_dssp ECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCTTCEE
T ss_pred eCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCCCcee
Confidence 9999999999997544444599999999999999999999976 99999999999999 7888899999999987
Q ss_pred cccCCCceeeeecccccccCccccc--------cCCCCcchhhHHHHHHHHHHHhCCCCCCCCcch---hHHHHhhhccc
Q 002349 750 LCVSKSYTSTYIMGTIGYIDPEYAR--------TSRLTEKSDVYSFGIVLLELLTGRKAVDNECNL---HHLILSKTANN 818 (933)
Q Consensus 750 ~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~---~~~~~~~~~~~ 818 (933)
..... ......||+.|+|||++. +..++.++|||||||++|||++|+.||...... ......... .
T Consensus 166 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~-~ 242 (319)
T 4euu_A 166 LEDDE--QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIIT-G 242 (319)
T ss_dssp CCTTC--CBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHH-H
T ss_pred cCCCC--ceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhc-C
Confidence 64332 223457999999999886 567899999999999999999999999632221 111111111 0
Q ss_pred cccc---c----------cCccccc-cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccC
Q 002349 819 AVME---T----------VDPEISA-TCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSL 869 (933)
Q Consensus 819 ~~~~---~----------~~~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~ 869 (933)
.... . ....++. ..........+.+++.+|++.||++|||++|++++..+.
T Consensus 243 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~ 307 (319)
T 4euu_A 243 KPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDI 307 (319)
T ss_dssp CCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred CCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence 0000 0 0001110 011235567888999999999999999999999988654
No 88
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=356.36 Aligned_cols=257 Identities=30% Similarity=0.463 Sum_probs=200.7
Q ss_pred hccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEecC
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFME 677 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~ 677 (933)
++|+..+.||+|+||+||+|.+. ++.||||++... ...+.+.+|++++++++||||+++++++. +..++||||++
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~~ 82 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYAE 82 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECCT
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcCC
Confidence 57888999999999999999986 588999998654 34578999999999999999999999886 45899999999
Q ss_pred CCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCC-eEEeecccccccccCCCc
Q 002349 678 NGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFE-AHLTDFGIAKSLCVSKSY 756 (933)
Q Consensus 678 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~-~kl~DfGla~~~~~~~~~ 756 (933)
+|+|.++++.......+++..++.++.|+++||+|||+....+|+||||||+||+++.++. +||+|||+++.....
T Consensus 83 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~--- 159 (307)
T 2eva_A 83 GGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH--- 159 (307)
T ss_dssp TCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC----------
T ss_pred CCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc---
Confidence 9999999975333345789999999999999999999732258999999999999998887 799999999765321
Q ss_pred eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccccCHH
Q 002349 757 TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDLG 836 (933)
Q Consensus 757 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (933)
.....||+.|+|||++.+..++.++||||||+++|||++|+.||.................. .+.... .
T Consensus 160 -~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~-----~~~~~~-----~ 228 (307)
T 2eva_A 160 -MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGT-----RPPLIK-----N 228 (307)
T ss_dssp ------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTC-----CCCCBT-----T
T ss_pred -cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCC-----CCCccc-----c
Confidence 22346999999999999999999999999999999999999999754322211111111111 111111 1
Q ss_pred HHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCC
Q 002349 837 AVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAP 873 (933)
Q Consensus 837 ~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 873 (933)
.+..+.+++.+|++.||++|||++++++.|+.+....
T Consensus 229 ~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 265 (307)
T 2eva_A 229 LPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYF 265 (307)
T ss_dssp CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGC
T ss_pred cCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhc
Confidence 2357889999999999999999999999998765433
No 89
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=1.4e-39 Score=356.20 Aligned_cols=246 Identities=24% Similarity=0.302 Sum_probs=207.3
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 672 (933)
.++|+..+.||+|+||+||+|+.+ +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 367899999999999999999976 58899999996542 23456788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
|||+++|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 85 ~e~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~ 158 (318)
T 1fot_A 85 MDYIEGGELFSLLR---KSQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPD 158 (318)
T ss_dssp ECCCCSCBHHHHHH---HTSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSS
T ss_pred EeCCCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcceecCC
Confidence 99999999999995 356799999999999999999999965 999999999999999999999999999987532
Q ss_pred CCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccc
Q 002349 753 SKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 753 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
.....+||+.|+|||++.+..++.++||||+||++|||++|+.||.+................ ++.
T Consensus 159 ----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~--------~p~-- 224 (318)
T 1fot_A 159 ----VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELR--------FPP-- 224 (318)
T ss_dssp ----CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCC--------CCT--
T ss_pred ----ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCC--------CCC--
Confidence 123457999999999999999999999999999999999999999876554443322221111 111
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRP-----TMHEVSRV 865 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RP-----t~~evl~~ 865 (933)
..+..+.+++.+|++.||++|| ++++++++
T Consensus 225 ---~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~h 259 (318)
T 1fot_A 225 ---FFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH 259 (318)
T ss_dssp ---TSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred ---CCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcC
Confidence 1135688899999999999999 89999864
No 90
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=4.4e-40 Score=374.22 Aligned_cols=264 Identities=20% Similarity=0.227 Sum_probs=214.0
Q ss_pred HHHHHHHhhccCcceeeecccceeEEEEEEcC-CceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEec
Q 002349 590 YEDIMRMTENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLS 665 (933)
Q Consensus 590 ~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~ 665 (933)
+.++....++|+..++||+|+||+||+|+++. ++.||+|++.... ....+.+.+|+.++..++||||+++++++.+
T Consensus 66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 145 (437)
T 4aw2_A 66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD 145 (437)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence 44455567899999999999999999999875 6889999996532 1223348899999999999999999999999
Q ss_pred CCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecc
Q 002349 666 SSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFG 745 (933)
Q Consensus 666 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfG 745 (933)
++..++||||+++|+|.++++. ....+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||
T Consensus 146 ~~~~~lV~Ey~~gg~L~~~l~~--~~~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~vkL~DFG 220 (437)
T 4aw2_A 146 DNNLYLVMDYYVGGDLLTLLSK--FEDRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFG 220 (437)
T ss_dssp SSEEEEEECCCTTCBHHHHHHT--TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred CCEEEEEEecCCCCcHHHHHHH--ccCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCEEEcchh
Confidence 9999999999999999999963 356799999999999999999999966 99999999999999999999999999
Q ss_pred cccccccCCCceeeeecccccccCccccc-----cCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccc
Q 002349 746 IAKSLCVSKSYTSTYIMGTIGYIDPEYAR-----TSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAV 820 (933)
Q Consensus 746 la~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~ 820 (933)
+|+.............+||+.|+|||++. ...++.++||||+||++|||++|+.||.+.................
T Consensus 221 la~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~ 300 (437)
T 4aw2_A 221 SCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERF 300 (437)
T ss_dssp TCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHC
T ss_pred hhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhhhhccccc
Confidence 99876544444445568999999999987 4578999999999999999999999998766554443322111110
Q ss_pred ccccCccccccccCHHHHHHHHHHHHHccCCCCCC--CCCHHHHHHHH
Q 002349 821 METVDPEISATCKDLGAVKKVFQLALLCSKRQPTD--RPTMHEVSRVL 866 (933)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~--RPt~~evl~~L 866 (933)
.++.... ..+..+.+++.+|+..+|++ ||+++|++++-
T Consensus 301 --~~p~~~~------~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~Hp 340 (437)
T 4aw2_A 301 --QFPTQVT------DVSENAKDLIRRLICSREHRLGQNGIEDFKKHP 340 (437)
T ss_dssp --CCCSSCC------CSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTSG
T ss_pred --cCCcccc------cCCHHHHHHHHHHhcccccccCCCCHHHHhCCC
Confidence 0111101 12356788999999888888 99999998753
No 91
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=6.4e-40 Score=361.42 Aligned_cols=256 Identities=25% Similarity=0.357 Sum_probs=202.6
Q ss_pred hccCcceeeecccceeEEEEEEcC-Cc----eEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKN-CK----PVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLL 671 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 671 (933)
++|+..+.||+|+||+||+|++.. ++ +||+|.+.... ....+++.+|++++++++||||+++++++..+. .++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~ 93 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL 93 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEE
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEE
Confidence 578899999999999999999653 33 46888886543 345678999999999999999999999998754 789
Q ss_pred EEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 672 FYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
|+||+++|+|.+++.. ....+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+|+...
T Consensus 94 v~e~~~~g~L~~~l~~--~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~ 168 (327)
T 3poz_A 94 ITQLMPFGCLLDYVRE--HKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168 (327)
T ss_dssp EEECCTTCBHHHHHHH--STTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHHHHT
T ss_pred EEEecCCCcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcceeEcc
Confidence 9999999999999963 456799999999999999999999976 99999999999999999999999999998764
Q ss_pred cCCCc-eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCcccc
Q 002349 752 VSKSY-TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEIS 829 (933)
Q Consensus 752 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (933)
..... ......||+.|+|||++.+..++.++|||||||++|||++ |+.||.+.............. . ...+
T Consensus 169 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~-~------~~~~ 241 (327)
T 3poz_A 169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGE-R------LPQP 241 (327)
T ss_dssp TTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTC-C------CCCC
T ss_pred CCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHHHcCC-C------CCCC
Confidence 33322 2233467889999999999999999999999999999999 999998654433222111111 0 0001
Q ss_pred ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 830 ATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 830 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
...+..+.+++.+||+.||++|||++++++.|+.+..
T Consensus 242 -----~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~ 278 (327)
T 3poz_A 242 -----PICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp -----TTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred -----ccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence 1123578899999999999999999999999987654
No 92
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=6.4e-40 Score=356.11 Aligned_cols=263 Identities=25% Similarity=0.397 Sum_probs=205.1
Q ss_pred hccCcceeeecccceeEEEEEEc-----CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecC--CccE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-----NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSS--SGNL 670 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-----~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--~~~~ 670 (933)
++|+..+.||+|+||+||+|++. +++.||||++........+.+.+|++++++++||||+++++++... ...+
T Consensus 10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 89 (295)
T 3ugc_A 10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK 89 (295)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCE
T ss_pred HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceE
Confidence 68899999999999999999852 5789999999877666678899999999999999999999998653 5589
Q ss_pred EEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccc
Q 002349 671 LFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSL 750 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~ 750 (933)
+||||+++|+|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 90 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~ 164 (295)
T 3ugc_A 90 LIMEYLPYGSLRDYLQK--HKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKVL 164 (295)
T ss_dssp EEEECCTTCBHHHHHHH--CGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCSCC--
T ss_pred EEEEeCCCCCHHHHHHh--cccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCcccccc
Confidence 99999999999999963 344699999999999999999999966 9999999999999999999999999999876
Q ss_pred ccCCCc--eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcc---------cc
Q 002349 751 CVSKSY--TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTAN---------NA 819 (933)
Q Consensus 751 ~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~---------~~ 819 (933)
...... ......++..|+|||.+.+..++.++||||||+++|||++|..|+................ ..
T Consensus 165 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (295)
T 3ugc_A 165 PQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIEL 244 (295)
T ss_dssp -----------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHH
T ss_pred cCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHH
Confidence 433221 1223457788999999999999999999999999999999999986432111000000000 00
Q ss_pred cccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 820 VMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
......... ....+..+.+++.+||+.||++|||++|+++.|+.+.
T Consensus 245 ~~~~~~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~ 290 (295)
T 3ugc_A 245 LKNNGRLPR-----PDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 290 (295)
T ss_dssp HHTTCCCCC-----CTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred HhccCcCCC-----CcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 000001111 1123467899999999999999999999999998764
No 93
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=3.4e-40 Score=369.03 Aligned_cols=269 Identities=23% Similarity=0.329 Sum_probs=215.0
Q ss_pred cCHHHHHHHhhccCcceeeecccceeEEEEEEc------CCceEEEEEecccC-chhHHHHHHHHHHHhcC-CCCceeee
Q 002349 588 HVYEDIMRMTENLSEKYIIGYGASSTVYKCVLK------NCKPVAIKRLYSHY-PQCLKEFETELETVGSI-KHRNLVSL 659 (933)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~~ 659 (933)
+....+....++|+..+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+++++++ +||||+++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 344555566789999999999999999999843 35789999997654 33456799999999999 79999999
Q ss_pred eeEEecCCc-cEEEEEecCCCCHHHHhcCCCC------------------------------------------------
Q 002349 660 QGYSLSSSG-NLLFYDFMENGSLWDILHGPTK------------------------------------------------ 690 (933)
Q Consensus 660 ~~~~~~~~~-~~lv~e~~~~gsL~~~l~~~~~------------------------------------------------ 690 (933)
++++...+. .++||||+++|+|.++++....
T Consensus 92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (359)
T 3vhe_A 92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEK 171 (359)
T ss_dssp EEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------
T ss_pred eeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccc
Confidence 999987654 8999999999999999974321
Q ss_pred ---------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCC
Q 002349 691 ---------------KKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKS 755 (933)
Q Consensus 691 ---------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~ 755 (933)
...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.......
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 248 (359)
T 3vhe_A 172 SLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 248 (359)
T ss_dssp ------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTT
T ss_pred ccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeeccccc
Confidence 12289999999999999999999976 999999999999999999999999999986643322
Q ss_pred -ceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCcccccccc
Q 002349 756 -YTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEISATCK 833 (933)
Q Consensus 756 -~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (933)
.......||+.|+|||++.+..++.++|||||||++|||++ |+.||.+................ ...+.
T Consensus 249 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~------~~~~~--- 319 (359)
T 3vhe_A 249 YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTR------MRAPD--- 319 (359)
T ss_dssp CEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCC------CCCCT---
T ss_pred chhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCC------CCCCC---
Confidence 23344578999999999999999999999999999999998 99999865443333222111111 11111
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 834 DLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 834 ~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
..+..+.+++.+|++.||++|||++|++++|+.+.
T Consensus 320 --~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~ 354 (359)
T 3vhe_A 320 --YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 354 (359)
T ss_dssp --TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHH
Confidence 12357889999999999999999999999998754
No 94
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=1.6e-39 Score=361.16 Aligned_cols=263 Identities=23% Similarity=0.394 Sum_probs=213.8
Q ss_pred HhhccCcceeeecccceeEEEEEEcC------CceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCc
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLKN------CKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSG 668 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~~------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 668 (933)
..++|+..+.||+|+||.||+|.+.+ ++.||||+++... ....+.+.+|++++++++||||+++++++...+.
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 124 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKP 124 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCc
Confidence 45789999999999999999999753 4789999997654 3446779999999999999999999999999999
Q ss_pred cEEEEEecCCCCHHHHhcCCCC---------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCC
Q 002349 669 NLLFYDFMENGSLWDILHGPTK---------------------KKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVK 727 (933)
Q Consensus 669 ~~lv~e~~~~gsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik 727 (933)
.++||||+++|+|.+++..... ...+++.+++.++.|++.||+|||++ +|+|||||
T Consensus 125 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlk 201 (343)
T 1luf_A 125 MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLA 201 (343)
T ss_dssp CEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCS
T ss_pred eEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCC
Confidence 9999999999999999964211 25799999999999999999999976 99999999
Q ss_pred CCceEeCCCCCeEEeecccccccccCCC-ceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCc
Q 002349 728 SSNILLDKDFEAHLTDFGIAKSLCVSKS-YTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNEC 805 (933)
Q Consensus 728 p~NIll~~~~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~ 805 (933)
|+||+++.++.+||+|||+++....... .......||+.|+|||.+.+..++.++||||||+++|||++ |+.||.+..
T Consensus 202 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 281 (343)
T 1luf_A 202 TRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA 281 (343)
T ss_dssp GGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred cceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCC
Confidence 9999999999999999999986643322 22334568899999999999999999999999999999999 999998654
Q ss_pred chhHHHHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCC
Q 002349 806 NLHHLILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAP 873 (933)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 873 (933)
......... .... +..+. ..+..+.+++.+||+.||++|||++++++.|+.+....
T Consensus 282 ~~~~~~~~~--~~~~-----~~~~~-----~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~ 337 (343)
T 1luf_A 282 HEEVIYYVR--DGNI-----LACPE-----NCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERA 337 (343)
T ss_dssp HHHHHHHHH--TTCC-----CCCCT-----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC--
T ss_pred hHHHHHHHh--CCCc-----CCCCC-----CCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhh
Confidence 433322211 1111 11111 12357889999999999999999999999999887644
No 95
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=9.8e-40 Score=365.71 Aligned_cols=250 Identities=19% Similarity=0.256 Sum_probs=201.9
Q ss_pred cCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEecCC
Q 002349 600 LSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFMEN 678 (933)
Q Consensus 600 ~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~ 678 (933)
+...+.||+|+||.||+|... +++.||+|++........+.+.+|++++++++||||+++++++...+..++||||+++
T Consensus 91 ~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~ 170 (373)
T 2x4f_A 91 VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDG 170 (373)
T ss_dssp EEEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred eecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCC
Confidence 344678999999999999975 5889999999876656678899999999999999999999999999999999999999
Q ss_pred CCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEe--CCCCCeEEeecccccccccCCCc
Q 002349 679 GSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILL--DKDFEAHLTDFGIAKSLCVSKSY 756 (933)
Q Consensus 679 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll--~~~~~~kl~DfGla~~~~~~~~~ 756 (933)
++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+|||+ +.++.+||+|||+++......
T Consensus 171 ~~L~~~l~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~-- 243 (373)
T 2x4f_A 171 GELFDRIID--ESYNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE-- 243 (373)
T ss_dssp CEEHHHHHH--TGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC--
T ss_pred CcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc--
Confidence 999998852 345689999999999999999999966 99999999999999 567899999999998764322
Q ss_pred eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccccCHH
Q 002349 757 TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDLG 836 (933)
Q Consensus 757 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (933)
......||+.|+|||++.+..++.++|||||||++|||++|+.||.+.................... ... .
T Consensus 244 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~---~~~------~ 314 (373)
T 2x4f_A 244 KLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLEDE---EFQ------D 314 (373)
T ss_dssp BCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCSCSG---GGT------T
T ss_pred ccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCChh---hhc------c
Confidence 2233469999999999999999999999999999999999999998766554443322221111110 011 1
Q ss_pred HHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 837 AVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 837 ~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
.+..+.+++.+|++.||++|||++|++++
T Consensus 315 ~~~~~~~li~~~L~~dp~~Rps~~e~l~h 343 (373)
T 2x4f_A 315 ISEEAKEFISKLLIKEKSWRISASEALKH 343 (373)
T ss_dssp SCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred CCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 23578899999999999999999999973
No 96
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=3.6e-39 Score=348.70 Aligned_cols=252 Identities=27% Similarity=0.462 Sum_probs=203.0
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccCch-------hHHHHHHHHHHHhcCCCCceeeeeeEEecCCcc
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQ-------CLKEFETELETVGSIKHRNLVSLQGYSLSSSGN 669 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 669 (933)
++|+..+.||+|+||+||+|.+. +++.||+|++...... ..+.+.+|++++++++||||+++++++.+..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-- 96 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-- 96 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence 57888999999999999999975 5789999998654321 1267899999999999999999999986554
Q ss_pred EEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eeeccCCCCceEeCCCCC-----eEEe
Q 002349 670 LLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPR--IIHRDVKSSNILLDKDFE-----AHLT 742 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dikp~NIll~~~~~-----~kl~ 742 (933)
++||||+++|+|.+.+. .....+++..+..++.|++.||+|||++ + |+||||||+||+++.++. +||+
T Consensus 97 ~lv~e~~~~~~L~~~l~--~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~~~kl~ 171 (287)
T 4f0f_A 97 RMVMEFVPCGDLYHRLL--DKAHPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPVCAKVA 171 (287)
T ss_dssp EEEEECCTTCBHHHHHH--CTTSCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSCCEEEC
T ss_pred eEEEEecCCCCHHHHHh--cccCCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCceeEEeC
Confidence 79999999999999886 3456799999999999999999999966 7 999999999999988776 9999
Q ss_pred ecccccccccCCCceeeeecccccccCccccc--cCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccc
Q 002349 743 DFGIAKSLCVSKSYTSTYIMGTIGYIDPEYAR--TSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAV 820 (933)
Q Consensus 743 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~ 820 (933)
|||+++.... ......||+.|+|||++. ...+++++||||+||++|+|++|+.||...................
T Consensus 172 Dfg~~~~~~~----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 247 (287)
T 4f0f_A 172 DFGLSQQSVH----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGL 247 (287)
T ss_dssp CCTTCBCCSS----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCC
T ss_pred CCCccccccc----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCC
Confidence 9999975422 234467999999999984 4567899999999999999999999998544333221111111111
Q ss_pred ccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccC
Q 002349 821 METVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSL 869 (933)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~ 869 (933)
. +.... ..+..+.+++.+||+.||++|||++|+++.|+.+
T Consensus 248 ~----~~~~~-----~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 248 R----PTIPE-----DCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp C----CCCCT-----TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred C----CCCCc-----ccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 1 11111 1245788999999999999999999999998763
No 97
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=5.3e-40 Score=363.03 Aligned_cols=250 Identities=22% Similarity=0.297 Sum_probs=206.7
Q ss_pred HHhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcC-CCCceeeeeeEEecCCcc
Q 002349 595 RMTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSI-KHRNLVSLQGYSLSSSGN 669 (933)
Q Consensus 595 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~ 669 (933)
...++|...+.||+|+||.||+|+++ +++.||+|+++... ....+.+..|.++++.+ +||||+++++++.+.+..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 34578999999999999999999986 47889999997542 23456678899999877 999999999999999999
Q ss_pred EEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccc
Q 002349 670 LLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKS 749 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~ 749 (933)
++||||+++|+|.+++. ..+.+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 94 ~lv~E~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~ 167 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQ---SCHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKE 167 (345)
T ss_dssp EEEEECCTTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred EEEEeCCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChhhhh
Confidence 99999999999999995 346799999999999999999999966 999999999999999999999999999986
Q ss_pred cccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccc
Q 002349 750 LCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEIS 829 (933)
Q Consensus 750 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (933)
.... .......+||+.|+|||++.+..++.++||||+||++|||++|+.||.+............... .++
T Consensus 168 ~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~--------~~p 238 (345)
T 1xjd_A 168 NMLG-DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNP--------FYP 238 (345)
T ss_dssp CCCT-TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC--------CCC
T ss_pred cccC-CCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhCCC--------CCC
Confidence 4322 2223456899999999999999999999999999999999999999987654443332222111 111
Q ss_pred ccccCHHHHHHHHHHHHHccCCCCCCCCCHH-HHHH
Q 002349 830 ATCKDLGAVKKVFQLALLCSKRQPTDRPTMH-EVSR 864 (933)
Q Consensus 830 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~-evl~ 864 (933)
.. .+..+.+++.+|++.||++||++. ++.+
T Consensus 239 ~~-----~s~~~~~li~~lL~~dp~~R~~~~~~i~~ 269 (345)
T 1xjd_A 239 RW-----LEKEAKDLLVKLFVREPEKRLGVRGDIRQ 269 (345)
T ss_dssp TT-----SCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred cc-----cCHHHHHHHHHHhcCCHhHcCCChHHHHc
Confidence 11 235688899999999999999997 7764
No 98
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=8.4e-40 Score=380.32 Aligned_cols=258 Identities=25% Similarity=0.385 Sum_probs=213.5
Q ss_pred hhccCcceeeecccceeEEEEEEcC-CceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEe
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDF 675 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 675 (933)
.++|+..+.||+|+||.||+|.++. ++.||||+++... ...++|.+|++++++++|||||++++++...+..++||||
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~ 297 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 297 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEc
Confidence 4578889999999999999999875 7889999997654 3467899999999999999999999999999999999999
Q ss_pred cCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCC
Q 002349 676 MENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKS 755 (933)
Q Consensus 676 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~ 755 (933)
+++|+|.++++. .....+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+++.......
T Consensus 298 ~~~g~L~~~l~~-~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~ 373 (495)
T 1opk_A 298 MTYGNLLDYLRE-CNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTY 373 (495)
T ss_dssp CTTCBHHHHHHH-SCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCE
T ss_pred cCCCCHHHHHHh-cCcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceeccCCce
Confidence 999999999964 2345689999999999999999999966 999999999999999999999999999987643322
Q ss_pred ceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCccccccccC
Q 002349 756 YTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKD 834 (933)
Q Consensus 756 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (933)
.......+++.|+|||++.+..++.++|||||||++|||++ |+.||.+........... .. .....+
T Consensus 374 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~~--~~-----~~~~~~----- 441 (495)
T 1opk_A 374 TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLE--KD-----YRMERP----- 441 (495)
T ss_dssp ECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHH--TT-----CCCCCC-----
T ss_pred eecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHH--cC-----CCCCCC-----
Confidence 22233456789999999999999999999999999999999 999997654333222111 11 111111
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 835 LGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 835 ~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
..++..+.+++.+||+.||++|||+++|++.|+.+..
T Consensus 442 ~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~ 478 (495)
T 1opk_A 442 EGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ 478 (495)
T ss_dssp TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCS
T ss_pred CCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHh
Confidence 1234678899999999999999999999999998754
No 99
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-40 Score=371.21 Aligned_cols=261 Identities=25% Similarity=0.349 Sum_probs=210.9
Q ss_pred hhccCcceeeecccceeEEEEEEc------CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCcc
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK------NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGN 669 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 669 (933)
.++|+..+.||+|+||+||+|.+. .++.||||++.... .....++.+|+.++++++||||+++++++......
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 367889999999999999999954 35689999997543 44556789999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHhcCCC----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCC---CeEEe
Q 002349 670 LLFYDFMENGSLWDILHGPT----KKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDF---EAHLT 742 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~----~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~---~~kl~ 742 (933)
++||||+++|+|.+++.... ....+++.+++.++.|++.||+|||++ +|+||||||+|||++.++ .+||+
T Consensus 150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kL~ 226 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIG 226 (367)
T ss_dssp EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCceEEEC
Confidence 99999999999999996321 224689999999999999999999966 999999999999999554 59999
Q ss_pred ecccccccccCCC-ceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhccccc
Q 002349 743 DFGIAKSLCVSKS-YTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAV 820 (933)
Q Consensus 743 DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~ 820 (933)
|||+|+....... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||.................
T Consensus 227 DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~~~~~-- 304 (367)
T 3l9p_A 227 DFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGR-- 304 (367)
T ss_dssp CCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCC--
T ss_pred CCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCC--
Confidence 9999986532221 22334568999999999999999999999999999999998 9999986654433322211110
Q ss_pred ccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCC
Q 002349 821 METVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPA 872 (933)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 872 (933)
..... ..+..+.+++.+||+.||++|||+++|++.|+.+...
T Consensus 305 -----~~~~~-----~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~ 346 (367)
T 3l9p_A 305 -----MDPPK-----NCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 346 (367)
T ss_dssp -----CCCCT-----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred -----CCCCc-----cCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence 11111 1235788999999999999999999999999876543
No 100
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=353.72 Aligned_cols=250 Identities=21% Similarity=0.280 Sum_probs=198.2
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCc--------------------------hhHHHHHHHHHHHh
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYP--------------------------QCLKEFETELETVG 649 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--------------------------~~~~~~~~E~~~l~ 649 (933)
.++|+..+.||+|+||.||+|.+. +++.||||++..... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 368999999999999999999975 578899999865421 11356889999999
Q ss_pred cCCCCceeeeeeEEec--CCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCC
Q 002349 650 SIKHRNLVSLQGYSLS--SSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVK 727 (933)
Q Consensus 650 ~l~h~niv~~~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik 727 (933)
+++||||+++++++.. .+..++||||+++++|.+++ ....+++..+..++.|++.||+|||++ +|+|||||
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~----~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlk 164 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVP----TLKPLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDIK 164 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSS----CSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCC
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHh----hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCC
Confidence 9999999999999986 56789999999999998875 345799999999999999999999976 99999999
Q ss_pred CCceEeCCCCCeEEeecccccccccCCCceeeeecccccccCccccccCC---CCcchhhHHHHHHHHHHHhCCCCCCCC
Q 002349 728 SSNILLDKDFEAHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSR---LTEKSDVYSFGIVLLELLTGRKAVDNE 804 (933)
Q Consensus 728 p~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~DvwSlGv~l~elltg~~p~~~~ 804 (933)
|+||+++.++.+||+|||+++...... .......||+.|+|||.+.+.. ++.++|||||||++|+|++|+.||.+.
T Consensus 165 p~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~ 243 (298)
T 2zv2_A 165 PSNLLVGEDGHIKIADFGVSNEFKGSD-ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE 243 (298)
T ss_dssp GGGEEECTTSCEEECCCTTCEECSSSS-CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred HHHEEECCCCCEEEecCCCcccccccc-ccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCc
Confidence 999999999999999999998764332 2234457999999999998765 478899999999999999999999865
Q ss_pred cchhHHHHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 805 CNLHHLILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
................ +.. ...+..+.+++.+||+.||++|||++|++++
T Consensus 244 ~~~~~~~~~~~~~~~~-----~~~------~~~~~~l~~li~~~l~~dp~~R~s~~e~l~h 293 (298)
T 2zv2_A 244 RIMCLHSKIKSQALEF-----PDQ------PDIAEDLKDLITRMLDKNPESRIVVPEIKLH 293 (298)
T ss_dssp SHHHHHHHHHHCCCCC-----CSS------SCCCHHHHHHHHHHTCSCTTTSCCHHHHTTC
T ss_pred cHHHHHHHHhcccCCC-----CCc------cccCHHHHHHHHHHhhcChhhCCCHHHHhcC
Confidence 4333222111111100 000 0123578899999999999999999999763
No 101
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-40 Score=363.25 Aligned_cols=247 Identities=21% Similarity=0.305 Sum_probs=202.8
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
++|...+.||+|+||+||+|.+. +++.||||++.... ......+.+|+++++.++||||+++++++..++..++||
T Consensus 9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 88 (336)
T 3h4j_B 9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI 88 (336)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 58999999999999999999974 57899999986532 233467899999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
||+ +|+|.+++. ..+.+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++......
T Consensus 89 E~~-~g~l~~~l~---~~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~ 161 (336)
T 3h4j_B 89 EYA-GGELFDYIV---EKKRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDG 161 (336)
T ss_dssp CCC-CEEHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTS
T ss_pred ECC-CCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceeccCC
Confidence 999 689999884 346799999999999999999999976 9999999999999999999999999999876433
Q ss_pred CCceeeeecccccccCccccccCCC-CcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYARTSRL-TEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
. .....+||+.|+|||++.+..+ ++++||||+||++|+|++|+.||.+........ ..... ...++.
T Consensus 162 ~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~-------~i~~~-~~~~p~-- 229 (336)
T 3h4j_B 162 N--FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFK-------KVNSC-VYVMPD-- 229 (336)
T ss_dssp B--TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCBC-------CCCSS-CCCCCT--
T ss_pred c--ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHHH-------HHHcC-CCCCcc--
Confidence 2 2234579999999999988776 789999999999999999999998643211100 00000 011111
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
..+..+.+++.+|++.||.+|||++|++++-
T Consensus 230 ---~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp 260 (336)
T 3h4j_B 230 ---FLSPGAQSLIRRMIVADPMQRITIQEIRRDP 260 (336)
T ss_dssp ---TSCHHHHHHHHTTSCSSGGGSCCHHHHTTCH
T ss_pred ---cCCHHHHHHHHHHcCCChhHCcCHHHHHhCh
Confidence 1235688999999999999999999998743
No 102
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=1.4e-39 Score=350.49 Aligned_cols=260 Identities=28% Similarity=0.394 Sum_probs=211.5
Q ss_pred hhccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEec
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFM 676 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~ 676 (933)
.++|+..+.||+|+||.||+|.+.+++.||||++.... ...+.+.+|++++++++||||+++++++. .+..++||||+
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~ 89 (279)
T 1qpc_A 12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYM 89 (279)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECC
T ss_pred HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEecC
Confidence 46888999999999999999999888899999997643 24578999999999999999999999986 45689999999
Q ss_pred CCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCCc
Q 002349 677 ENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSY 756 (933)
Q Consensus 677 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~ 756 (933)
++++|.+++.. .....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++........
T Consensus 90 ~~~~L~~~l~~-~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~ 165 (279)
T 1qpc_A 90 ENGSLVDFLKT-PSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYT 165 (279)
T ss_dssp TTCBHHHHTTS-HHHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEE
T ss_pred CCCCHHHHHhc-CCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccccCcccc
Confidence 99999999952 1122689999999999999999999966 9999999999999999999999999999876443322
Q ss_pred eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCccccccccCH
Q 002349 757 TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDL 835 (933)
Q Consensus 757 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (933)
......+++.|+|||.+.+..++.++||||||+++|||++ |+.||.+............. .......
T Consensus 166 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~-------~~~~~~~----- 233 (279)
T 1qpc_A 166 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERG-------YRMVRPD----- 233 (279)
T ss_dssp CCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT-------CCCCCCT-----
T ss_pred cccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcc-------cCCCCcc-----
Confidence 2333457789999999998889999999999999999999 99999865443322221111 0111111
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCCC
Q 002349 836 GAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAPE 874 (933)
Q Consensus 836 ~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~ 874 (933)
..+..+.+++.+|++.||++|||++++++.|+.+.....
T Consensus 234 ~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~ 272 (279)
T 1qpc_A 234 NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATE 272 (279)
T ss_dssp TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC-
T ss_pred cccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhcc
Confidence 124678899999999999999999999999988755443
No 103
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=9.8e-40 Score=361.00 Aligned_cols=253 Identities=20% Similarity=0.286 Sum_probs=201.3
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCC------
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSS------ 667 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~------ 667 (933)
..++|+..+.||+|+||.||+|+++ +++.||||++.... ....+.+.+|++++++++||||+++++++.+..
T Consensus 4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 83 (332)
T 3qd2_B 4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQE 83 (332)
T ss_dssp HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHH
T ss_pred hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhh
Confidence 4578999999999999999999987 68899999997543 345678999999999999999999999986543
Q ss_pred ---------------------------------------------------ccEEEEEecCCCCHHHHhcCCCCCCCCCH
Q 002349 668 ---------------------------------------------------GNLLFYDFMENGSLWDILHGPTKKKKLDW 696 (933)
Q Consensus 668 ---------------------------------------------------~~~lv~e~~~~gsL~~~l~~~~~~~~l~~ 696 (933)
..++||||+++++|.+++.........++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~ 163 (332)
T 3qd2_B 84 EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREH 163 (332)
T ss_dssp HHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCH
T ss_pred hhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhh
Confidence 27899999999999999976444456778
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCC-----------ceeeeecccc
Q 002349 697 DTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKS-----------YTSTYIMGTI 765 (933)
Q Consensus 697 ~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~-----------~~~~~~~gt~ 765 (933)
..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....... .......||+
T Consensus 164 ~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 240 (332)
T 3qd2_B 164 GVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTK 240 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CG
T ss_pred HHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCc
Confidence 88999999999999999966 999999999999999999999999999987644321 1123357999
Q ss_pred cccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccccCHHHHHHHHHHH
Q 002349 766 GYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDLGAVKKVFQLA 845 (933)
Q Consensus 766 ~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li 845 (933)
.|+|||++.+..++.++||||+||++|||++|..|+....... ....... . +.. .......+.+++
T Consensus 241 ~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~~~~----~~~~~~~----~-~~~-----~~~~~~~~~~li 306 (332)
T 3qd2_B 241 LYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRII----TDVRNLK----F-PLL-----FTQKYPQEHMMV 306 (332)
T ss_dssp GGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHHHHH----HHHHTTC----C-CHH-----HHHHCHHHHHHH
T ss_pred CccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHHHHH----HHhhccC----C-Ccc-----cccCChhHHHHH
Confidence 9999999999999999999999999999999987764211111 0111110 0 000 112335678899
Q ss_pred HHccCCCCCCCCCHHHHHHH
Q 002349 846 LLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 846 ~~cl~~dP~~RPt~~evl~~ 865 (933)
.+|++.||++|||++|++++
T Consensus 307 ~~~l~~~p~~Rps~~~~l~~ 326 (332)
T 3qd2_B 307 QDMLSPSPTERPEATDIIEN 326 (332)
T ss_dssp HHHHCSSGGGSCCHHHHHHS
T ss_pred HHHccCCCCcCCCHHHHhhc
Confidence 99999999999999999974
No 104
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=2e-39 Score=359.68 Aligned_cols=246 Identities=17% Similarity=0.195 Sum_probs=207.3
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
++|+..+.||+|+||.||+|+++ +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 58899999999999999999976 58899999986532 234567889999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
||+++|+|.+++. ..+.+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 121 e~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~ 194 (350)
T 1rdq_E 121 EYVAGGEMFSHLR---RIGRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR 194 (350)
T ss_dssp ECCTTCBHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred cCCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccceeccCC
Confidence 9999999999995 345799999999999999999999966 9999999999999999999999999999875322
Q ss_pred CCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCK 833 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (933)
....+||+.|+|||++.+..++.++||||+||++|||++|+.||.+................ ++.
T Consensus 195 ----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~--------~p~--- 259 (350)
T 1rdq_E 195 ----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVR--------FPS--- 259 (350)
T ss_dssp ----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCC--------CCT---
T ss_pred ----cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHHHHHHHHcCCCC--------CCC---
Confidence 23457999999999999999999999999999999999999999876544433322221111 111
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHHH
Q 002349 834 DLGAVKKVFQLALLCSKRQPTDRPT-----MHEVSRVL 866 (933)
Q Consensus 834 ~~~~~~~l~~li~~cl~~dP~~RPt-----~~evl~~L 866 (933)
..+..+.+++.+|++.||++||+ ++|++++-
T Consensus 260 --~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h~ 295 (350)
T 1rdq_E 260 --HFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHK 295 (350)
T ss_dssp --TCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSG
T ss_pred --CCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHhCc
Confidence 12356889999999999999998 88887643
No 105
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=360.34 Aligned_cols=252 Identities=24% Similarity=0.316 Sum_probs=192.3
Q ss_pred HhhccCcceeeecccceeEEEEEEcC-CceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 674 (933)
..++|+..+.||+|+||.||+|.+.. ++.||||++.... ..+.+.+|++++++++||||+++++++..++..++|||
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 128 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE 128 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence 35679999999999999999999874 7889999997643 34668899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCC---CCCeEEeecccccccc
Q 002349 675 FMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDK---DFEAHLTDFGIAKSLC 751 (933)
Q Consensus 675 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~---~~~~kl~DfGla~~~~ 751 (933)
|+++|+|.+++. ..+.+++.++..++.|++.||+|||++ +|+||||||+||+++. ++.+||+|||+++...
T Consensus 129 ~~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~ 202 (349)
T 2w4o_A 129 LVTGGELFDRIV---EKGYYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVE 202 (349)
T ss_dssp CCCSCBHHHHHT---TCSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC------
T ss_pred eCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCccccccC
Confidence 999999999994 456799999999999999999999976 9999999999999975 8899999999998653
Q ss_pred cCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccc
Q 002349 752 VSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISAT 831 (933)
Q Consensus 752 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (933)
.. .......||+.|+|||++.+..++.++|||||||++|||++|+.||.+............... .. ...+..
T Consensus 203 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~-~~-~~~~~~--- 275 (349)
T 2w4o_A 203 HQ--VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCE-YY-FISPWW--- 275 (349)
T ss_dssp ------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTC-CC-CCTTTT---
T ss_pred cc--cccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCC-Cc-cCCchh---
Confidence 22 223345799999999999999999999999999999999999999976554432222111111 10 000100
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 832 CKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 832 ~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
...+..+.+++.+|++.||++|||+.|++++
T Consensus 276 ---~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 306 (349)
T 2w4o_A 276 ---DEVSLNAKDLVRKLIVLDPKKRLTTFQALQH 306 (349)
T ss_dssp ---TTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred ---hhCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0123578899999999999999999999985
No 106
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=6.9e-40 Score=360.80 Aligned_cols=262 Identities=23% Similarity=0.369 Sum_probs=196.6
Q ss_pred hhccCcceeeecccceeEEEEEEcCCc----eEEEEEeccc--CchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCcc-
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCK----PVAIKRLYSH--YPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGN- 669 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~----~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~- 669 (933)
.++|+..+.||+|+||.||+|.+.... .||||++... .....+++.+|++++++++||||+++++++......
T Consensus 22 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 101 (323)
T 3qup_A 22 EQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKG 101 (323)
T ss_dssp ---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC----
T ss_pred hhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccccc
Confidence 468999999999999999999976532 7999999764 344567899999999999999999999999877655
Q ss_pred -----EEEEEecCCCCHHHHhcCC---CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEE
Q 002349 670 -----LLFYDFMENGSLWDILHGP---TKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHL 741 (933)
Q Consensus 670 -----~lv~e~~~~gsL~~~l~~~---~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl 741 (933)
++||||+++|+|.+++... .....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||
T Consensus 102 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~~kl 178 (323)
T 3qup_A 102 RLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTVCV 178 (323)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEE
T ss_pred CCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCCEEE
Confidence 9999999999999998531 1223689999999999999999999976 9999999999999999999999
Q ss_pred eecccccccccCCCc-eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccc
Q 002349 742 TDFGIAKSLCVSKSY-TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNA 819 (933)
Q Consensus 742 ~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 819 (933)
+|||+++........ ......+++.|+|||.+.+..++.++|||||||++|||++ |+.||.+...............
T Consensus 179 ~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~- 257 (323)
T 3qup_A 179 ADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGNR- 257 (323)
T ss_dssp CCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCC-
T ss_pred eeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHHhcCCC-
Confidence 999999876433222 1223457889999999999999999999999999999999 9999986554443322211110
Q ss_pred cccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCC
Q 002349 820 VMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAP 873 (933)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 873 (933)
.... ...+..+.+++.+|++.||++|||+.++++.|+.+...+
T Consensus 258 ------~~~~-----~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~ 300 (323)
T 3qup_A 258 ------LKQP-----PECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHL 300 (323)
T ss_dssp ------CCCC-----TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred ------CCCC-----CccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence 0001 112357889999999999999999999999998876543
No 107
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=365.12 Aligned_cols=261 Identities=24% Similarity=0.358 Sum_probs=212.6
Q ss_pred hhccCcceeeecccceeEEEEEEcC--------CceEEEEEecccC-chhHHHHHHHHHHHhcC-CCCceeeeeeEEecC
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKN--------CKPVAIKRLYSHY-PQCLKEFETELETVGSI-KHRNLVSLQGYSLSS 666 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~--------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~ 666 (933)
.++|...+.||+|+||+||+|.+.. ++.||||++.... ....+++.+|+++++++ +||||+++++++..+
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 147 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 147 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence 4688999999999999999999632 3579999997654 34457789999999999 999999999999999
Q ss_pred CccEEEEEecCCCCHHHHhcCCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEe
Q 002349 667 SGNLLFYDFMENGSLWDILHGPT-------------KKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILL 733 (933)
Q Consensus 667 ~~~~lv~e~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll 733 (933)
+..++||||+++|+|.+++.... ....+++..++.++.|++.||+|||++ +|+||||||+||++
T Consensus 148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll 224 (382)
T 3tt0_A 148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLV 224 (382)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEE
T ss_pred CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCcceEEE
Confidence 99999999999999999996422 124699999999999999999999966 99999999999999
Q ss_pred CCCCCeEEeecccccccccCCC-ceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHH
Q 002349 734 DKDFEAHLTDFGIAKSLCVSKS-YTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLI 811 (933)
Q Consensus 734 ~~~~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~ 811 (933)
+.++.+||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|+|++ |+.||.+........
T Consensus 225 ~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~~ 304 (382)
T 3tt0_A 225 TEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFK 304 (382)
T ss_dssp CTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHH
T ss_pred cCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 9999999999999987643322 22233467889999999999999999999999999999999 999998654333222
Q ss_pred HhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCC
Q 002349 812 LSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPA 872 (933)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 872 (933)
.... .. ....+. ..+..+.+++.+||+.||++|||++||++.|+.+...
T Consensus 305 ~~~~--~~-----~~~~~~-----~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 353 (382)
T 3tt0_A 305 LLKE--GH-----RMDKPS-----NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVAL 353 (382)
T ss_dssp HHHT--TC-----CCCCCS-----SCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHc--CC-----CCCCCc-----cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 1111 11 111111 1235788999999999999999999999999887543
No 108
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=2.6e-39 Score=347.84 Aligned_cols=251 Identities=21% Similarity=0.273 Sum_probs=208.8
Q ss_pred HhhccCcceeeecccceeEEEEEEcC-CceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 674 (933)
..++|+..+.||+|+||.||+|.+.. ++.||+|++........+.+.+|++++++++||||+++++++...+..++|||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 86 (277)
T 3f3z_A 7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVME 86 (277)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEe
Confidence 35689999999999999999999765 67899999977665667889999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEe---CCCCCeEEeecccccccc
Q 002349 675 FMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILL---DKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 675 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll---~~~~~~kl~DfGla~~~~ 751 (933)
|+++++|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||++....
T Consensus 87 ~~~~~~L~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~ 160 (277)
T 3f3z_A 87 LCTGGELFERVV---HKRVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFK 160 (277)
T ss_dssp CCCSCBHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred ccCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEecccceecc
Confidence 999999999884 346699999999999999999999976 99999999999999 788999999999998764
Q ss_pred cCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccc
Q 002349 752 VSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISAT 831 (933)
Q Consensus 752 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (933)
... ......||+.|+|||.+.+. ++.++||||+|+++|+|++|+.||........................
T Consensus 161 ~~~--~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~------ 231 (277)
T 3f3z_A 161 PGK--MMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPEKDW------ 231 (277)
T ss_dssp TTS--CBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHH------
T ss_pred Ccc--chhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCchhh------
Confidence 322 23345799999999998765 899999999999999999999999876554433332221111111000
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002349 832 CKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSR 864 (933)
Q Consensus 832 ~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~ 864 (933)
...+..+.+++.+|++.||++|||+.++++
T Consensus 232 ---~~~~~~~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 232 ---LNVSPQAESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp ---TTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred ---hcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 012357889999999999999999999986
No 109
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.4e-39 Score=372.00 Aligned_cols=350 Identities=21% Similarity=0.236 Sum_probs=201.6
Q ss_pred cEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhc
Q 002349 69 TVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILK 148 (933)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 148 (933)
+++.|+|++|.+++. | .++.+++|++|+|++|++++ +| ++.+++|++|+|++|.+++. | ++++++|++|+|+
T Consensus 43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD 114 (457)
T ss_dssp TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC
T ss_pred CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC
Confidence 344555555555542 2 45555555555555555554 23 55555555555555555542 2 5555555555555
Q ss_pred ccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcC
Q 002349 149 NNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEI 228 (933)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 228 (933)
+|++++ +| ++.+++|++|++++|++++. .++.+++|++|++++|...+.+ .++.+++|++|++++|++++ +
T Consensus 115 ~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 115 TNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp SSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-C
T ss_pred CCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-e
Confidence 555554 22 55555555555555555542 2455555555555555443333 24555555555555555553 2
Q ss_pred CCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCc
Q 002349 229 PFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTK 308 (933)
Q Consensus 229 p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 308 (933)
| .....+|+.|++++|++++. .++.+++|+.|++++|++++ +| ++.+++|+.|++++|++++.. +..+++
T Consensus 186 ~-l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~ 255 (457)
T 3bz5_A 186 D-VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSK 255 (457)
T ss_dssp C-CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTT
T ss_pred c-cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCC
Confidence 2 11223445555555555443 24444555555555555544 22 444455555555555554432 223344
Q ss_pred ceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCc
Q 002349 309 LHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSL 388 (933)
Q Consensus 309 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~ 388 (933)
|+.|++++| +|+.|++++|++.+.+| +..+++|+.|++++|+..+.+|. ..++|+.|++++
T Consensus 256 L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~ 316 (457)
T 3bz5_A 256 LTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQ 316 (457)
T ss_dssp CCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTT
T ss_pred CCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhh
Confidence 444444333 45566777777666655 45677778888887776665553 334555555554
Q ss_pred ccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccc
Q 002349 389 NNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIP 468 (933)
Q Consensus 389 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 468 (933)
| ++|+.|+|++|+|++. .+..+++|+.|++++|+|++ ++.|..|++++|+++|.
T Consensus 317 ~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-- 370 (457)
T 3bz5_A 317 N-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-- 370 (457)
T ss_dssp C-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE--
T ss_pred c-------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec--
Confidence 4 5788888888888874 37888888888888888885 24667778888888876
Q ss_pred hhhccccccceeeecCCCCcCcccc
Q 002349 469 EELSQLQNMFSLRLDYNNLSGDVMS 493 (933)
Q Consensus 469 ~~~~~l~~L~~L~l~~N~l~~~~~~ 493 (933)
..+..|..+++++|+++|.+|.
T Consensus 371 ---~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 371 ---GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp ---EEEEECCCBCCBTTBEEEECCT
T ss_pred ---ceeeecCccccccCcEEEEcCh
Confidence 3566778888888888887764
No 110
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.7e-39 Score=361.03 Aligned_cols=264 Identities=22% Similarity=0.334 Sum_probs=210.6
Q ss_pred HhhccCcceeeecccceeEEEEEEc------CCceEEEEEecccC-chhHHHHHHHHHHHhcC-CCCceeeeeeEEecCC
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK------NCKPVAIKRLYSHY-PQCLKEFETELETVGSI-KHRNLVSLQGYSLSSS 667 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~ 667 (933)
..++|...+.||+|+||.||+|.+. .++.||||++.... ....+.+.+|+++++++ +||||+++++++...+
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 122 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG 122 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence 4578999999999999999999962 35679999997543 34567899999999999 8999999999999999
Q ss_pred ccEEEEEecCCCCHHHHhcCCCC--------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCC
Q 002349 668 GNLLFYDFMENGSLWDILHGPTK--------------------KKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVK 727 (933)
Q Consensus 668 ~~~lv~e~~~~gsL~~~l~~~~~--------------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dik 727 (933)
..++||||+++|+|.+++..... ...+++..+..++.|++.||+|||++ +|+|||||
T Consensus 123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dik 199 (344)
T 1rjb_A 123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLA 199 (344)
T ss_dssp SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETTCS
T ss_pred ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCC
Confidence 99999999999999999964321 13489999999999999999999976 99999999
Q ss_pred CCceEeCCCCCeEEeecccccccccCCCc-eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCc
Q 002349 728 SSNILLDKDFEAHLTDFGIAKSLCVSKSY-TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNEC 805 (933)
Q Consensus 728 p~NIll~~~~~~kl~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~ 805 (933)
|+||+++.++.+||+|||+++........ ......||+.|+|||.+.+..++.++||||||+++|+|+| |+.||.+..
T Consensus 200 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 279 (344)
T 1rjb_A 200 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP 279 (344)
T ss_dssp GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred hhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCC
Confidence 99999999999999999999876443322 2334567889999999999999999999999999999998 999998654
Q ss_pred chhHHHHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCC
Q 002349 806 NLHHLILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAP 873 (933)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 873 (933)
............ ..+..+. ..+..+.+++.+||+.||++|||+.+++++|+.+....
T Consensus 280 ~~~~~~~~~~~~------~~~~~~~-----~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~ 336 (344)
T 1rjb_A 280 VDANFYKLIQNG------FKMDQPF-----YATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADA 336 (344)
T ss_dssp CSHHHHHHHHTT------CCCCCCT-----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC---
T ss_pred cHHHHHHHHhcC------CCCCCCC-----CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHH
Confidence 433322211111 1111111 12467889999999999999999999999998876543
No 111
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=363.92 Aligned_cols=249 Identities=24% Similarity=0.289 Sum_probs=203.0
Q ss_pred hccCcceeeecccceeEEEEEEcC-CceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
++|+..+.||+|+||.||+|.+.. ++.||+|++.... ....+.+.+|++++++++|||||++++++.+.+..++||
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~ 94 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV 94 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 679999999999999999999764 7889999986532 334567889999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
||+++|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+|+.....
T Consensus 95 e~~~gg~L~~~l~---~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 168 (384)
T 4fr4_A 95 DLLLGGDLRYHLQ---QNVHFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE 168 (384)
T ss_dssp CCCTTEEHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ecCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeeccCC
Confidence 9999999999995 456799999999999999999999966 9999999999999999999999999999876432
Q ss_pred CCceeeeecccccccCcccccc---CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYART---SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISA 830 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (933)
......+||+.|+|||++.+ ..++.++||||+||++|||++|+.||.................. ....+.
T Consensus 169 --~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-----~~~~p~ 241 (384)
T 4fr4_A 169 --TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETT-----VVTYPS 241 (384)
T ss_dssp --CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHC-----CCCCCT
T ss_pred --CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhc-----ccCCCC
Confidence 23345689999999999864 45899999999999999999999999743322111111110000 001111
Q ss_pred cccCHHHHHHHHHHHHHccCCCCCCCCC-HHHHHH
Q 002349 831 TCKDLGAVKKVFQLALLCSKRQPTDRPT-MHEVSR 864 (933)
Q Consensus 831 ~~~~~~~~~~l~~li~~cl~~dP~~RPt-~~evl~ 864 (933)
..+..+.+++.+||+.||++||+ ++++.+
T Consensus 242 -----~~s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 242 -----AWSQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp -----TSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred -----cCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 12357889999999999999998 777765
No 112
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=1e-39 Score=360.46 Aligned_cols=257 Identities=16% Similarity=0.190 Sum_probs=205.9
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcC-CCCceeeeeeEEecCCccEEEEEe
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSI-KHRNLVSLQGYSLSSSGNLLFYDF 675 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~ 675 (933)
++|+..+.||+|+||.||+|... +++.||||++..... .+.+.+|+++++++ +||||+++++++..++..++||||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~ 86 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLEL 86 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEEC
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEe
Confidence 57899999999999999999964 678999999865432 34688999999999 999999999999999999999999
Q ss_pred cCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCC-----eEEeeccccccc
Q 002349 676 MENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFE-----AHLTDFGIAKSL 750 (933)
Q Consensus 676 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~-----~kl~DfGla~~~ 750 (933)
+ +++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++. +||+|||+++.+
T Consensus 87 ~-~~~L~~~~~~--~~~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~ 160 (330)
T 2izr_A 87 L-GPSLEDLFDL--CDRTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEY 160 (330)
T ss_dssp C-CCBHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEES
T ss_pred C-CCCHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEcccceee
Confidence 9 9999999963 256799999999999999999999966 9999999999999998887 999999999876
Q ss_pred ccCCCc------eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHH-hhhcccccccc
Q 002349 751 CVSKSY------TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLIL-SKTANNAVMET 823 (933)
Q Consensus 751 ~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~-~~~~~~~~~~~ 823 (933)
...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+......... .........
T Consensus 161 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~-- 238 (330)
T 2izr_A 161 IDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRA-- 238 (330)
T ss_dssp BCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHH--
T ss_pred ecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhcc--
Confidence 433221 12356799999999999999999999999999999999999999986432211111 111000000
Q ss_pred cCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccC
Q 002349 824 VDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSL 869 (933)
Q Consensus 824 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~ 869 (933)
... ..... ..+ .+.+++..|++.||.+||++++|.+.|+.+
T Consensus 239 ~~~--~~~~~--~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~ 279 (330)
T 2izr_A 239 TPI--EVLCE--NFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDL 279 (330)
T ss_dssp SCH--HHHTT--TCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred CCH--HHHhc--cCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 000 00000 123 788999999999999999999999988654
No 113
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=2e-39 Score=357.28 Aligned_cols=250 Identities=23% Similarity=0.263 Sum_probs=198.0
Q ss_pred hhccCcceeeecccceeEEEEEE----cCCceEEEEEecccC----chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCc
Q 002349 597 TENLSEKYIIGYGASSTVYKCVL----KNCKPVAIKRLYSHY----PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSG 668 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 668 (933)
.++|+..+.||+|+||.||+|+. .+++.||+|+++... ......+.+|++++++++||||+++++++...+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 36899999999999999999997 468899999997642 2334567889999999999999999999999999
Q ss_pred cEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccc
Q 002349 669 NLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAK 748 (933)
Q Consensus 669 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~ 748 (933)
.++||||+++++|.+++. ..+.+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 96 ~~lv~e~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~ 169 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLE---REGIFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLCK 169 (327)
T ss_dssp EEEEEECCTTEEHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSCC-
T ss_pred EEEEEeCCCCCcHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCccc
Confidence 999999999999999995 345789999999999999999999976 99999999999999999999999999997
Q ss_pred ccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccc
Q 002349 749 SLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEI 828 (933)
Q Consensus 749 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (933)
...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||.+................ .++
T Consensus 170 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~----~p~-- 242 (327)
T 3a62_A 170 ESIHDG-TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLN----LPP-- 242 (327)
T ss_dssp ----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCC----CCT--
T ss_pred ccccCC-ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCC----CCC--
Confidence 643221 2233457999999999999999999999999999999999999999876544433222211111 111
Q ss_pred cccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHHH
Q 002349 829 SATCKDLGAVKKVFQLALLCSKRQPTDRP-----TMHEVSRVL 866 (933)
Q Consensus 829 ~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~evl~~L 866 (933)
..+..+.+++.+|++.||++|| ++.|++++-
T Consensus 243 -------~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~hp 278 (327)
T 3a62_A 243 -------YLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHP 278 (327)
T ss_dssp -------TSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHSG
T ss_pred -------CCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcCC
Confidence 1235788999999999999999 788888753
No 114
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=7e-40 Score=360.87 Aligned_cols=257 Identities=23% Similarity=0.328 Sum_probs=204.3
Q ss_pred hccCcceeeecccceeEEEEEEcC-Cce----EEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKN-CKP----VAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLL 671 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~----vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 671 (933)
++|+..+.||+|+||+||+|.+.. ++. ||+|.+.... ....+.+.+|+.++++++||||+++++++. ++..++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~ 91 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL 91 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence 478889999999999999999754 333 7888875443 334456788999999999999999999986 456889
Q ss_pred EEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 672 FYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
||||+++|+|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 92 v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~ 166 (325)
T 3kex_A 92 VTQYLPLGSLLDHVRQ--HRGALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVADLLP 166 (325)
T ss_dssp EEECCTTCBSHHHHHS--SGGGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGGGSC
T ss_pred EEEeCCCCCHHHHHHH--ccccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCcccccC
Confidence 9999999999999963 346789999999999999999999976 99999999999999999999999999998764
Q ss_pred cCCC-ceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCcccc
Q 002349 752 VSKS-YTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEIS 829 (933)
Q Consensus 752 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (933)
.... .......||..|+|||++.+..++.++|||||||++|+|++ |+.||.+............... ...+
T Consensus 167 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~-------~~~~ 239 (325)
T 3kex_A 167 PDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGER-------LAQP 239 (325)
T ss_dssp CCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTTCB-------CCCC
T ss_pred cccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHHcCCC-------CCCC
Confidence 4332 22344568889999999999999999999999999999999 9999986544333222211110 0001
Q ss_pred ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCC
Q 002349 830 ATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPA 872 (933)
Q Consensus 830 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 872 (933)
.. .+..+.+++.+||+.||++|||++++++.|+.+...
T Consensus 240 ~~-----~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~ 277 (325)
T 3kex_A 240 QI-----CTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARD 277 (325)
T ss_dssp TT-----BCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTS
T ss_pred Cc-----CcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 11 123567899999999999999999999999887653
No 115
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=1.5e-39 Score=356.59 Aligned_cols=259 Identities=25% Similarity=0.410 Sum_probs=211.4
Q ss_pred hhccCcceeeecccceeEEEEEEc------CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCcc
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK------NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGN 669 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 669 (933)
.++|...+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++...+..
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 101 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL 101 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence 468889999999999999999862 34789999997643 34567789999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHhcCCCC---------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCC
Q 002349 670 LLFYDFMENGSLWDILHGPTK---------------------KKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKS 728 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp 728 (933)
++||||+++++|.+++..... ...+++.+++.++.|++.||+|||++ +|+||||||
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dikp 178 (314)
T 2ivs_A 102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHRDLAA 178 (314)
T ss_dssp EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEECCCCSG
T ss_pred EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCcccccch
Confidence 999999999999999964221 23489999999999999999999976 999999999
Q ss_pred CceEeCCCCCeEEeecccccccccCCCce-eeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcc
Q 002349 729 SNILLDKDFEAHLTDFGIAKSLCVSKSYT-STYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECN 806 (933)
Q Consensus 729 ~NIll~~~~~~kl~DfGla~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~ 806 (933)
+||+++.++.+||+|||+++......... .....+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||.+...
T Consensus 179 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~ 258 (314)
T 2ivs_A 179 RNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP 258 (314)
T ss_dssp GGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred heEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence 99999999999999999998764333222 233457889999999999999999999999999999999 9999986544
Q ss_pred hhHHHHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 807 LHHLILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
........... .+.... ..+..+.+++.+|++.||++|||++++++.|+.+.
T Consensus 259 ~~~~~~~~~~~-------~~~~~~-----~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~ 310 (314)
T 2ivs_A 259 ERLFNLLKTGH-------RMERPD-----NCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMM 310 (314)
T ss_dssp GGHHHHHHTTC-------CCCCCT-----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhcCC-------cCCCCc-----cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 33322211111 011111 12467889999999999999999999999998653
No 116
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=2.1e-39 Score=351.43 Aligned_cols=261 Identities=20% Similarity=0.247 Sum_probs=202.3
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 674 (933)
++|+..+.||+|+||+||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++.+++..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 57889999999999999999976 47889999997543 3345778899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCC
Q 002349 675 FMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSK 754 (933)
Q Consensus 675 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~ 754 (933)
|+++ ++.+.+. ...+.+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~~~-~l~~~~~--~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 155 (292)
T 3o0g_A 82 FCDQ-DLKKYFD--SCNGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV 155 (292)
T ss_dssp CCSE-EHHHHHH--HTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCSCC
T ss_pred cCCC-CHHHHHH--hCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecCCcc
Confidence 9986 5555553 2356799999999999999999999976 99999999999999999999999999998764322
Q ss_pred CceeeeecccccccCccccccCC-CCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhh-hcccccccccCccccc--
Q 002349 755 SYTSTYIMGTIGYIDPEYARTSR-LTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSK-TANNAVMETVDPEISA-- 830 (933)
Q Consensus 755 ~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 830 (933)
.......||+.|+|||++.+.. ++.++||||+||++|+|++|+.||............. ...........+....
T Consensus 156 -~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 234 (292)
T 3o0g_A 156 -RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLP 234 (292)
T ss_dssp -SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGST
T ss_pred -ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccc
Confidence 2233457899999999998765 7999999999999999999988865433333222111 1111100000000000
Q ss_pred --------------cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 831 --------------TCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 831 --------------~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..........+.+++.+|++.||++|||++|++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 283 (292)
T 3o0g_A 235 DYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH 283 (292)
T ss_dssp TCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred cccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 00001124678899999999999999999999975
No 117
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=2.3e-39 Score=359.17 Aligned_cols=250 Identities=20% Similarity=0.244 Sum_probs=206.6
Q ss_pred HhhccCcceeeecccceeEEEEEEcC-CceEEEEEecccC---chhHHHHHHHHHHHhcC-CCCceeeeeeEEecCCccE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY---PQCLKEFETELETVGSI-KHRNLVSLQGYSLSSSGNL 670 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~ 670 (933)
..++|+..+.||+|+||+||+|+++. ++.||+|++.... ....+.+.+|..+++.+ +||||+++++++.+.+..+
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 34789999999999999999999875 6889999997542 23456788999999988 8999999999999999999
Q ss_pred EEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccc
Q 002349 671 LFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSL 750 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~ 750 (933)
+||||+++|+|.+++. ..+.+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 98 lv~E~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~ 171 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQ---QVGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEN 171 (353)
T ss_dssp EEEECCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred EEEeCCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCccccc
Confidence 9999999999999995 345799999999999999999999966 9999999999999999999999999999864
Q ss_pred ccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccc
Q 002349 751 CVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISA 830 (933)
Q Consensus 751 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (933)
.. ........+||+.|+|||++.+..++.++||||+||++|||++|+.||.+................ ++.
T Consensus 172 ~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~--------~p~ 242 (353)
T 2i0e_A 172 IW-DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVA--------YPK 242 (353)
T ss_dssp CC-TTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCC--------CCT
T ss_pred cc-CCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCC--------CCC
Confidence 22 222334568999999999999999999999999999999999999999876544333222221111 111
Q ss_pred cccCHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHH
Q 002349 831 TCKDLGAVKKVFQLALLCSKRQPTDRPT-----MHEVSRV 865 (933)
Q Consensus 831 ~~~~~~~~~~l~~li~~cl~~dP~~RPt-----~~evl~~ 865 (933)
..+..+.+++.+|++.||++||+ ++++.++
T Consensus 243 -----~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h 277 (353)
T 2i0e_A 243 -----SMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH 277 (353)
T ss_dssp -----TSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTS
T ss_pred -----CCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence 12357888999999999999995 5777754
No 118
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=3.9e-39 Score=354.37 Aligned_cols=253 Identities=22% Similarity=0.310 Sum_probs=209.9
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCc------hhHHHHHHHHHHHhcCCCCceeeeeeEEecCCc
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYP------QCLKEFETELETVGSIKHRNLVSLQGYSLSSSG 668 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 668 (933)
..++|+..+.||+|+||.||+|.+. +++.||+|++..... ...+.+.+|++++++++||||+++++++...+.
T Consensus 10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 89 (321)
T 2a2a_A 10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTD 89 (321)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred hhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCE
Confidence 3468999999999999999999976 478999999965432 135779999999999999999999999999999
Q ss_pred cEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCC----CeEEeec
Q 002349 669 NLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDF----EAHLTDF 744 (933)
Q Consensus 669 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~----~~kl~Df 744 (933)
.++||||+++++|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++ .+||+||
T Consensus 90 ~~lv~e~~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~Df 163 (321)
T 2a2a_A 90 VVLILELVSGGELFDFLA---QKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDF 163 (321)
T ss_dssp EEEEECCCCSCBHHHHHH---TCSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCC
T ss_pred EEEEEEcCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEccC
Confidence 999999999999999995 356789999999999999999999966 999999999999999887 7999999
Q ss_pred ccccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccccccc
Q 002349 745 GIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETV 824 (933)
Q Consensus 745 Gla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 824 (933)
|+++...... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||.+................ .
T Consensus 164 g~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~----~ 237 (321)
T 2a2a_A 164 GLAHEIEDGV--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYD----F 237 (321)
T ss_dssp TTCEECCTTC--CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCC----C
T ss_pred ccceecCccc--cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccc----c
Confidence 9998764322 223457999999999999999999999999999999999999999876554443322221111 1
Q ss_pred CccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 825 DPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 825 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
++.... ..+..+.+++.+|++.||++|||++|++++
T Consensus 238 ~~~~~~-----~~~~~~~~li~~~l~~dp~~Rps~~e~l~h 273 (321)
T 2a2a_A 238 DEEFFS-----HTSELAKDFIRKLLVKETRKRLTIQEALRH 273 (321)
T ss_dssp CHHHHT-----TCCHHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred Chhhhc-----ccCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 111111 113568899999999999999999999985
No 119
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=2.6e-39 Score=354.86 Aligned_cols=264 Identities=22% Similarity=0.295 Sum_probs=193.9
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 674 (933)
.++|+..+.||+|+||.||+|.++ +++.||+|++.... ....+.+.+|++++++++||||+++++++..++..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 467899999999999999999975 47899999996543 3345778899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcCC---CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 675 FMENGSLWDILHGP---TKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 675 ~~~~gsL~~~l~~~---~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
|++ |+|.+++... .....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 159 (317)
T 2pmi_A 84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARAFG 159 (317)
T ss_dssp CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence 998 5999888521 1234689999999999999999999966 99999999999999999999999999998764
Q ss_pred cCCCceeeeecccccccCccccccC-CCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcc---
Q 002349 752 VSKSYTSTYIMGTIGYIDPEYARTS-RLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPE--- 827 (933)
Q Consensus 752 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 827 (933)
.... ......||+.|+|||++.+. .++.++||||+||++|||++|+.||.+..............+...+...+.
T Consensus 160 ~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 238 (317)
T 2pmi_A 160 IPVN-TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTK 238 (317)
T ss_dssp SCCC-CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGG
T ss_pred CCcc-cCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhh
Confidence 3222 22345789999999999764 689999999999999999999999987665544433221111111100000
Q ss_pred -------ccc-----------cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 828 -------ISA-----------TCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 828 -------~~~-----------~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
+.. .......+..+.+++.+|++.||++|||++|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h 294 (317)
T 2pmi_A 239 LPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHH 294 (317)
T ss_dssp CTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred hhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence 000 00000123578899999999999999999999874
No 120
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=1.9e-39 Score=361.01 Aligned_cols=255 Identities=20% Similarity=0.234 Sum_probs=204.5
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC-----chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY-----PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNL 670 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 670 (933)
.++|+..+.||+|+||+||+|.++ +++.||||++.... ....+.+.+|++++++++||||+++++++.+++..+
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 102 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY 102 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 468999999999999999999976 57899999985421 224577999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHhcCC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCC---eEEeeccc
Q 002349 671 LFYDFMENGSLWDILHGP-TKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFE---AHLTDFGI 746 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~---~kl~DfGl 746 (933)
+||||+++++|.+.+... .....+++..+..++.|++.||+|||++ +|+||||||+||+++.++. +||+|||+
T Consensus 103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~ 179 (351)
T 3c0i_A 103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGFGV 179 (351)
T ss_dssp EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECCCTT
T ss_pred EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEecCcc
Confidence 999999999998877421 1234589999999999999999999966 9999999999999987654 99999999
Q ss_pred ccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCc
Q 002349 747 AKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDP 826 (933)
Q Consensus 747 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (933)
++...... .......||+.|+|||++.+..++.++||||+||++|+|++|+.||.+... ....... ..... ..+
T Consensus 180 a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-~~~~~i~--~~~~~--~~~ 253 (351)
T 3c0i_A 180 AIQLGESG-LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE-RLFEGII--KGKYK--MNP 253 (351)
T ss_dssp CEECCTTS-CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH-HHHHHHH--HTCCC--CCH
T ss_pred eeEecCCC-eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH-HHHHHHH--cCCCC--CCc
Confidence 98764332 223445799999999999999999999999999999999999999986432 1111111 11100 011
Q ss_pred cccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 827 EISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 827 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
.... ..+..+.+++.+||+.||++|||+.|++++
T Consensus 254 ~~~~-----~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 287 (351)
T 3c0i_A 254 RQWS-----HISESAKDLVRRMLMLDPAERITVYEALNH 287 (351)
T ss_dssp HHHT-----TSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred cccc-----cCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0000 123578899999999999999999999863
No 121
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=2.6e-39 Score=350.16 Aligned_cols=260 Identities=30% Similarity=0.469 Sum_probs=199.2
Q ss_pred hhccCcceeeecccceeEEEEEEcCCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 674 (933)
.++|+..+.||+|+||+||+|.+.+ .||||+++... ....+.+.+|++++++++||||+++++++ .....++|||
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e 99 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQ 99 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEE
T ss_pred ccceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEE
Confidence 3579999999999999999998654 59999987543 34457799999999999999999999965 4566899999
Q ss_pred ecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC-
Q 002349 675 FMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS- 753 (933)
Q Consensus 675 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~- 753 (933)
|+++++|.++++ .....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 100 ~~~~~~L~~~l~--~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 174 (289)
T 3og7_A 100 WCEGSSLYHHLH--ASETKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWS 174 (289)
T ss_dssp CCCEEEHHHHHT--TC---CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC---------
T ss_pred ecCCCcHHHHHh--hccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceecccccccc
Confidence 999999999996 3456799999999999999999999976 9999999999999999999999999999765321
Q ss_pred CCceeeeecccccccCccccc---cCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYAR---TSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISA 830 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (933)
.........||+.|+|||.+. +..++.++||||+|+++|+|++|+.||.+.............. .... ....
T Consensus 175 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~-~~~~----~~~~ 249 (289)
T 3og7_A 175 GSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRG-SLSP----DLSK 249 (289)
T ss_dssp ---------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHT-SCCC----CTTS
T ss_pred ccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhccc-ccCc----chhh
Confidence 122233457999999999986 5678899999999999999999999998765544433322211 1111 1111
Q ss_pred cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 831 TCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 831 ~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
. ....+..+.+++.+|++.||++|||++++++.|+.+..
T Consensus 250 ~--~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 250 V--RSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp S--CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred c--cccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence 1 11234678999999999999999999999999988753
No 122
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=4.5e-39 Score=369.61 Aligned_cols=247 Identities=20% Similarity=0.301 Sum_probs=206.8
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
++|...+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+++++.++||||+++++++...+..++||
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~ 95 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM 95 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 57889999999999999999986 68999999996542 233567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
||+++|+|.+++. ..+.+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 96 E~~~gg~L~~~l~---~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~ 169 (476)
T 2y94_A 96 EYVSGGELFDYIC---KNGRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 169 (476)
T ss_dssp ECCSSEEHHHHTT---SSSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCEECCTT
T ss_pred eCCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchhhcccc
Confidence 9999999999994 456799999999999999999999965 9999999999999999999999999999876432
Q ss_pred CCceeeeecccccccCccccccCCC-CcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYARTSRL-TEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
. .....+||+.|+|||++.+..+ +.++||||+||++|+|++|+.||.+................ .+.
T Consensus 170 ~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~--------~p~-- 237 (476)
T 2y94_A 170 E--FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFY--------TPQ-- 237 (476)
T ss_dssp C--CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHHHHHHHTTCCC--------CCT--
T ss_pred c--cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCcC--------CCc--
Confidence 2 2334579999999999998766 68999999999999999999999876544333222111110 011
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+..+.+++.+|++.||++|||++|++++
T Consensus 238 ---~~s~~~~~Li~~~L~~dP~~Rpt~~eil~h 267 (476)
T 2y94_A 238 ---YLNPSVISLLKHMLQVDPMKRATIKDIREH 267 (476)
T ss_dssp ---TCCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred ---cCCHHHHHHHHHHcCCCchhCcCHHHHHhC
Confidence 113468889999999999999999999973
No 123
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=3.5e-39 Score=361.89 Aligned_cols=251 Identities=22% Similarity=0.301 Sum_probs=201.6
Q ss_pred hhccCcceeeecccceeEEEEEEcC-CceEEEEEecccC---chhHHHHHHHHHHHhcC-CCCceeeeeeEEecCCccEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY---PQCLKEFETELETVGSI-KHRNLVSLQGYSLSSSGNLL 671 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~l 671 (933)
.++|+..++||+|+||+||+|+++. ++.||+|+++... ....+.+.+|..+++++ +|||||++++++.+.+..++
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 4689999999999999999999774 6789999997542 23345578899999887 89999999999999999999
Q ss_pred EEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 672 FYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
||||+++|+|.+++. ..+.+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+|+...
T Consensus 131 V~E~~~gg~L~~~l~---~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~~~ 204 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQ---RQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL 204 (396)
T ss_dssp EEECCTTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEEcCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeeecc
Confidence 999999999999995 346799999999999999999999966 99999999999999999999999999998632
Q ss_pred cCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcch-------hHHHHhhhccccccccc
Q 002349 752 VSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNL-------HHLILSKTANNAVMETV 824 (933)
Q Consensus 752 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~-------~~~~~~~~~~~~~~~~~ 824 (933)
. ........+||+.|+|||++.+..++.++||||+||++|||++|+.||...... ............
T Consensus 205 ~-~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~----- 278 (396)
T 4dc2_A 205 R-PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQ----- 278 (396)
T ss_dssp C-TTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCC-----
T ss_pred c-CCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccc-----
Confidence 2 222344568999999999999999999999999999999999999999642211 111111111110
Q ss_pred CccccccccCHHHHHHHHHHHHHccCCCCCCCCCH------HHHHHH
Q 002349 825 DPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTM------HEVSRV 865 (933)
Q Consensus 825 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~------~evl~~ 865 (933)
..++. ..+..+.+++.+||+.||++||++ +|++++
T Consensus 279 -~~~p~-----~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~H 319 (396)
T 4dc2_A 279 -IRIPR-----SLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH 319 (396)
T ss_dssp -CCCCT-----TSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHS
T ss_pred -cCCCC-----cCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcC
Confidence 11111 123567889999999999999985 566653
No 124
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=2e-39 Score=350.94 Aligned_cols=258 Identities=26% Similarity=0.386 Sum_probs=214.9
Q ss_pred HhhccCcceeeecccceeEEEEEEcC-CceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 674 (933)
..++|+..+.||+|+||.||+|.+.. ++.||+|++.... ...+.+.+|++++++++||||+++++++..++..++|||
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e 89 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE 89 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence 35688999999999999999999875 7889999997543 346788999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCC
Q 002349 675 FMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSK 754 (933)
Q Consensus 675 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~ 754 (933)
|+++++|.+++.. .....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++.......
T Consensus 90 ~~~~~~L~~~~~~-~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~ 165 (288)
T 3kfa_A 90 FMTYGNLLDYLRE-CNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT 165 (288)
T ss_dssp CCTTEEHHHHHHH-CCTTTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSS
T ss_pred cCCCCcHHHHHHh-cccCCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCccceeccCCc
Confidence 9999999999964 2345699999999999999999999976 99999999999999999999999999998775444
Q ss_pred CceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCcccccccc
Q 002349 755 SYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEISATCK 833 (933)
Q Consensus 755 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (933)
........+|+.|+|||.+.+..++.++||||+|+++|+|++ |..||............... .....+.
T Consensus 166 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~~~~-------~~~~~~~--- 235 (288)
T 3kfa_A 166 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKD-------YRMERPE--- 235 (288)
T ss_dssp SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTT-------CCCCCCT---
T ss_pred cccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcc-------CCCCCCC---
Confidence 444445567889999999999999999999999999999999 99999765433322211111 0111111
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 834 DLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 834 ~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
..+..+.+++.+|++.||++|||++++++.|+.+.
T Consensus 236 --~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~ 270 (288)
T 3kfa_A 236 --GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF 270 (288)
T ss_dssp --TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHH
Confidence 12367889999999999999999999999987654
No 125
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=2.2e-39 Score=352.47 Aligned_cols=260 Identities=16% Similarity=0.181 Sum_probs=208.3
Q ss_pred hccCcceeeecccceeEEEEEE-cCCceEEEEEecccCchhHHHHHHHHHHHhcC-CCCceeeeeeEEecCCccEEEEEe
Q 002349 598 ENLSEKYIIGYGASSTVYKCVL-KNCKPVAIKRLYSHYPQCLKEFETELETVGSI-KHRNLVSLQGYSLSSSGNLLFYDF 675 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~ 675 (933)
++|+..+.||+|+||.||+|.+ .+++.||||++.... ..+.+.+|+++++++ +|+|++++++++......++||||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~ 87 (298)
T 1csn_A 10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDL 87 (298)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEEC
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEe
Confidence 5799999999999999999996 468899999986543 235678899999999 799999999999999999999999
Q ss_pred cCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCC-----eEEeeccccccc
Q 002349 676 MENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFE-----AHLTDFGIAKSL 750 (933)
Q Consensus 676 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~-----~kl~DfGla~~~ 750 (933)
+ +++|.+++.. ...++++..+..++.|++.||+|||++ +|+||||||+||+++.++. +||+|||+++..
T Consensus 88 ~-~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~ 161 (298)
T 1csn_A 88 L-GPSLEDLLDL--CGRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFY 161 (298)
T ss_dssp C-CCBHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEES
T ss_pred c-CCCHHHHHHH--hccCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECcccccc
Confidence 9 9999999963 345699999999999999999999965 9999999999999987776 999999999876
Q ss_pred ccCCCc------eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHH-hhhcccccccc
Q 002349 751 CVSKSY------TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLIL-SKTANNAVMET 823 (933)
Q Consensus 751 ~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~-~~~~~~~~~~~ 823 (933)
...... ......||+.|+|||++.+..++.++||||||+++|||++|+.||.+......... ...........
T Consensus 162 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~ 241 (298)
T 1csn_A 162 RDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTP 241 (298)
T ss_dssp BCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSC
T ss_pred ccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCcc
Confidence 443221 23445799999999999999999999999999999999999999986432211111 11100000000
Q ss_pred cCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 824 VDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 824 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
.+.... ..+..+.+++.+|++.||++||++++|++.|+.+..
T Consensus 242 -~~~~~~-----~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~ 283 (298)
T 1csn_A 242 -LRELCA-----GFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLE 283 (298)
T ss_dssp -HHHHTT-----TSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred -HHHHHh-----hCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHH
Confidence 000000 124678899999999999999999999999987654
No 126
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=3.6e-39 Score=358.61 Aligned_cols=261 Identities=21% Similarity=0.230 Sum_probs=205.5
Q ss_pred HHHHhhccCcceeeecccceeEEEEEEc-CCceEEEEEeccc-----CchhHHHHHHHHHHHhcCCCCceeeeeeEEecC
Q 002349 593 IMRMTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSH-----YPQCLKEFETELETVGSIKHRNLVSLQGYSLSS 666 (933)
Q Consensus 593 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 666 (933)
+....++|+..+.||+|+||+||+|.+. +++.||+|++... .....+.+.+|++++++++||||+++++++.+.
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~ 100 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE 100 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence 4567789999999999999999999975 4778999998643 234567899999999999999999999999999
Q ss_pred CccEEEEEecCCCCHHHHhcCCC-------------------------------------CCCCCCHHHHHHHHHHHHHH
Q 002349 667 SGNLLFYDFMENGSLWDILHGPT-------------------------------------KKKKLDWDTRLKIALGAAQG 709 (933)
Q Consensus 667 ~~~~lv~e~~~~gsL~~~l~~~~-------------------------------------~~~~l~~~~~~~i~~~i~~~ 709 (933)
+..++||||+++|+|.+++.... ....+++..+..++.|++.|
T Consensus 101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~ 180 (345)
T 3hko_A 101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA 180 (345)
T ss_dssp SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 99999999999999999984100 01234677888999999999
Q ss_pred HHHhhcCCCCCeeeccCCCCceEeCCCC--CeEEeecccccccccCC---CceeeeecccccccCcccccc--CCCCcch
Q 002349 710 LAYLHHDCSPRIIHRDVKSSNILLDKDF--EAHLTDFGIAKSLCVSK---SYTSTYIMGTIGYIDPEYART--SRLTEKS 782 (933)
Q Consensus 710 l~~LH~~~~~~ivH~Dikp~NIll~~~~--~~kl~DfGla~~~~~~~---~~~~~~~~gt~~y~aPE~~~~--~~~~~~~ 782 (933)
|+|||++ +|+||||||+||+++.++ .+||+|||+++.+.... ........||+.|+|||++.+ ..++.++
T Consensus 181 l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~ 257 (345)
T 3hko_A 181 LHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKC 257 (345)
T ss_dssp HHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHH
T ss_pred HHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHH
Confidence 9999966 999999999999998776 89999999998653322 122345679999999999875 6789999
Q ss_pred hhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 002349 783 DVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEV 862 (933)
Q Consensus 783 DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ev 862 (933)
|||||||++|||++|+.||.+................... +... ..+..+.+++.+|++.||++|||+.|+
T Consensus 258 DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~---~~~~------~~~~~~~~li~~~l~~~p~~Rps~~~~ 328 (345)
T 3hko_A 258 DAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKLCFEN---PNYN------VLSPLARDLLSNLLNRNVDERFDAMRA 328 (345)
T ss_dssp HHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCTTS---GGGG------GSCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHhcccccCC---cccc------cCCHHHHHHHHHHcCCChhHCCCHHHH
Confidence 9999999999999999999876555444332222111111 1110 123578899999999999999999999
Q ss_pred HHH
Q 002349 863 SRV 865 (933)
Q Consensus 863 l~~ 865 (933)
+++
T Consensus 329 l~h 331 (345)
T 3hko_A 329 LQH 331 (345)
T ss_dssp HHS
T ss_pred hcC
Confidence 974
No 127
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=4.5e-39 Score=344.64 Aligned_cols=251 Identities=22% Similarity=0.339 Sum_probs=206.0
Q ss_pred hccCcceeeecccceeEEEEEEcCCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecC--CccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSS--SGNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--~~~~lv~ 673 (933)
++|+..+.||+|+||.||+|+++ ++.||||++.... ....+.+.+|++++++++||||+++++++... ...++||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT 88 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence 57889999999999999999986 6889999997653 34456799999999999999999999999887 7789999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPR--IIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
||+++|+|.++++. .....+++..+..++.|++.||+|||++ + |+||||||+||+++.++.++++|||++....
T Consensus 89 e~~~~~~L~~~l~~-~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~ 164 (271)
T 3kmu_A 89 HWMPYGSLYNVLHE-GTNFVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ 164 (271)
T ss_dssp ECCTTCBHHHHHHS-CSSCCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS
T ss_pred cccCCCcHHHHHhh-cccCCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEeccceeeec
Confidence 99999999999974 2233689999999999999999999965 6 9999999999999999999999998875432
Q ss_pred cCCCceeeeecccccccCccccccCCCCc---chhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccc
Q 002349 752 VSKSYTSTYIMGTIGYIDPEYARTSRLTE---KSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEI 828 (933)
Q Consensus 752 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (933)
. ....||+.|+|||.+.+..++. ++||||||+++|||++|+.||.+.............. ..+..
T Consensus 165 ~------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~------~~~~~ 232 (271)
T 3kmu_A 165 S------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEG------LRPTI 232 (271)
T ss_dssp C------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHSC------CCCCC
T ss_pred c------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhcC------CCCCC
Confidence 1 2246899999999998765544 8999999999999999999998655444332221111 11111
Q ss_pred cccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 829 SATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 829 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
+. ..+..+.+++.+||+.||++|||++++++.|+.+.
T Consensus 233 ~~-----~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~ 269 (271)
T 3kmu_A 233 PP-----GISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQ 269 (271)
T ss_dssp CT-----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred CC-----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence 11 12357889999999999999999999999998764
No 128
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.3e-39 Score=351.91 Aligned_cols=263 Identities=22% Similarity=0.253 Sum_probs=201.7
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLL 671 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 671 (933)
..++|+..+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|+.++++++||||+++++++..++..++
T Consensus 32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l 111 (309)
T 2h34_A 32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV 111 (309)
T ss_dssp --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence 4578999999999999999999976 57889999997543 2334778999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 672 FYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
||||+++++|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++....
T Consensus 112 v~e~~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 185 (309)
T 2h34_A 112 DMRLINGVDLAAMLR---RQGPLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASATT 185 (309)
T ss_dssp EEECCCCEEHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC-----
T ss_pred EEEecCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCcccc
Confidence 999999999999995 345799999999999999999999976 99999999999999999999999999998764
Q ss_pred cCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccc
Q 002349 752 VSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISAT 831 (933)
Q Consensus 752 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (933)
...........|++.|+|||.+.+..++.++||||||+++|+|++|+.||......... ..............+
T Consensus 186 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~-~~~~~~~~~~~~~~~----- 259 (309)
T 2h34_A 186 DEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSVMG-AHINQAIPRPSTVRP----- 259 (309)
T ss_dssp -----------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHH-HHHHSCCCCGGGTST-----
T ss_pred ccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHHHH-HHhccCCCCccccCC-----
Confidence 43333334567999999999999999999999999999999999999999865432111 111111100111111
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHHccCCCCCC
Q 002349 832 CKDLGAVKKVFQLALLCSKRQPTDRP-TMHEVSRVLGSLVPAPE 874 (933)
Q Consensus 832 ~~~~~~~~~l~~li~~cl~~dP~~RP-t~~evl~~L~~~~~~~~ 874 (933)
..+..+.+++.+||+.||++|| +++++++.|+.......
T Consensus 260 ----~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~ 299 (309)
T 2h34_A 260 ----GIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATAD 299 (309)
T ss_dssp ----TCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC---
T ss_pred ----CCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhc
Confidence 1234688899999999999999 99999999998766554
No 129
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=4.6e-39 Score=356.23 Aligned_cols=250 Identities=22% Similarity=0.306 Sum_probs=202.4
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcC-CCCceeeeeeEEecCCccEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSI-KHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv 672 (933)
++|+..+.||+|+||.||+|+++ +++.||+|++.... ....+.+.+|..+++++ +||||+++++++.+.+..++|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 57899999999999999999986 47889999997542 33456688999999988 899999999999999999999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
|||+++|+|.+++. ..+.+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 89 ~e~~~gg~L~~~l~---~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~ 162 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQ---RQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 162 (345)
T ss_dssp ECCCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCSCC
T ss_pred EeCCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEeccccccccC
Confidence 99999999999995 345799999999999999999999966 999999999999999999999999999986422
Q ss_pred CCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcch-------hHHHHhhhcccccccccC
Q 002349 753 SKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNL-------HHLILSKTANNAVMETVD 825 (933)
Q Consensus 753 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~-------~~~~~~~~~~~~~~~~~~ 825 (933)
. .......+||+.|+|||++.+..++.++||||+||++|||++|+.||...... ............
T Consensus 163 ~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~------ 235 (345)
T 3a8x_A 163 P-GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQ------ 235 (345)
T ss_dssp T-TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCC------
T ss_pred C-CCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCC------
Confidence 2 22334568999999999999999999999999999999999999999642111 111111111110
Q ss_pred ccccccccCHHHHHHHHHHHHHccCCCCCCCCCH------HHHHHH
Q 002349 826 PEISATCKDLGAVKKVFQLALLCSKRQPTDRPTM------HEVSRV 865 (933)
Q Consensus 826 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~------~evl~~ 865 (933)
..++. ..+..+.+++.+|++.||++||++ +|++++
T Consensus 236 ~~~p~-----~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~h 276 (345)
T 3a8x_A 236 IRIPR-----SLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH 276 (345)
T ss_dssp CCCCT-----TSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTS
T ss_pred CCCCC-----CCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcC
Confidence 11111 123568889999999999999995 666653
No 130
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=5.4e-39 Score=346.76 Aligned_cols=252 Identities=23% Similarity=0.324 Sum_probs=208.1
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
.++|+..+.||+|+||.||+|.++ +++.||+|++.... ....+.+.+|++++++++||||+++++++..++..++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 468999999999999999999976 47899999986543 334567889999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCC---eEEeeccccccc
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFE---AHLTDFGIAKSL 750 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~---~kl~DfGla~~~ 750 (933)
||+++++|.+.+. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++. +||+|||++...
T Consensus 85 e~~~~~~l~~~~~---~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~ 158 (284)
T 3kk8_A 85 DLVTGGELFEDIV---AREFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV 158 (284)
T ss_dssp CCCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCEEC
T ss_pred ecCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEc
Confidence 9999999999884 346799999999999999999999976 9999999999999986655 999999999776
Q ss_pred ccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccc
Q 002349 751 CVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISA 830 (933)
Q Consensus 751 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (933)
.... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||.+.................... ...
T Consensus 159 ~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~---~~~- 232 (284)
T 3kk8_A 159 NDSE--AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSP---EWD- 232 (284)
T ss_dssp CSSC--BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTT---TTT-
T ss_pred ccCc--cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhccccCCch---hhc-
Confidence 4322 2234579999999999999999999999999999999999999998765544433322222111111 000
Q ss_pred cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 831 TCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 831 ~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+..+.+++.+|++.||++|||++|++++
T Consensus 233 -----~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 262 (284)
T 3kk8_A 233 -----TVTPEAKSLIDSMLTVNPKKRITADQALKV 262 (284)
T ss_dssp -----TSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred -----ccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 123568899999999999999999999874
No 131
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=1.1e-39 Score=382.88 Aligned_cols=264 Identities=28% Similarity=0.392 Sum_probs=216.2
Q ss_pred hhccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEec
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFM 676 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~ 676 (933)
.++|+..+.||+|+||.||+|.++++..||||+++... ...++|.+|++++++++||||+++++++.+ +..++||||+
T Consensus 266 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~~ 343 (535)
T 2h8h_A 266 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYM 343 (535)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCC
T ss_pred hhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeehh
Confidence 46788899999999999999999988889999997654 235789999999999999999999999876 6789999999
Q ss_pred CCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCCc
Q 002349 677 ENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSY 756 (933)
Q Consensus 677 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~ 756 (933)
++|+|.++++. .....+++.+++.++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+++........
T Consensus 344 ~~gsL~~~l~~-~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~ 419 (535)
T 2h8h_A 344 SKGSLLDFLKG-ETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT 419 (535)
T ss_dssp TTEEHHHHHSH-HHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHH
T ss_pred cCCcHHHHHhh-cCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccceecCCCcee
Confidence 99999999952 1234689999999999999999999966 9999999999999999999999999999876432222
Q ss_pred eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCccccccccCH
Q 002349 757 TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDL 835 (933)
Q Consensus 757 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (933)
......++..|+|||++.+..++.++|||||||++|||++ |+.||.+....+...... ... ......
T Consensus 420 ~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~--~~~-----~~~~~~----- 487 (535)
T 2h8h_A 420 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVE--RGY-----RMPCPP----- 487 (535)
T ss_dssp TTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHH--TTC-----CCCCCT-----
T ss_pred cccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH--cCC-----CCCCCC-----
Confidence 2233457789999999999999999999999999999999 999998654433322211 110 111111
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCCCCCCC
Q 002349 836 GAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAPEPQKQ 878 (933)
Q Consensus 836 ~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~~~~~ 878 (933)
.++..+.+++.+||+.||++|||+++|++.|+.+.....++..
T Consensus 488 ~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~~~~~~ 530 (535)
T 2h8h_A 488 ECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQ 530 (535)
T ss_dssp TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCCSCSSC
T ss_pred CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhccCcccC
Confidence 2346788999999999999999999999999998876665544
No 132
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=4.5e-39 Score=345.65 Aligned_cols=246 Identities=19% Similarity=0.281 Sum_probs=183.5
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
++|+..+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 57999999999999999999965 57899999997543 334567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
||+ ++++.+.+. ....+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 93 e~~-~~~l~~~~~---~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 165 (275)
T 2eue_A 93 EYA-GNELFDYIV---QRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG 165 (275)
T ss_dssp ECC-CEEHHHHHH---TSSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCSSCC------
T ss_pred hhc-CCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CCeeccCChHhEEECCCCCEEEeecccceeccCc
Confidence 999 678888874 346799999999999999999999966 9999999999999999999999999999765332
Q ss_pred CCceeeeecccccccCccccccCCC-CcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYARTSRL-TEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
. ......||+.|+|||.+.+..+ ++++||||+|+++|+|++|+.||.+................. +.
T Consensus 166 ~--~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~--------~~-- 233 (275)
T 2eue_A 166 N--FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTL--------PK-- 233 (275)
T ss_dssp -----------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCC--------CT--
T ss_pred c--cccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCC--------Cc--
Confidence 2 2234569999999999988765 789999999999999999999998765443332222111111 11
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+..+.+++.+|++.||++|||++|++++
T Consensus 234 ---~~~~~~~~li~~~l~~dP~~Rps~~e~l~h 263 (275)
T 2eue_A 234 ---FLSPGAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp ---TSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred ---cCCHHHHHHHHHHhhcCHhHCCCHHHHhhC
Confidence 123568889999999999999999999863
No 133
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-39 Score=368.32 Aligned_cols=263 Identities=18% Similarity=0.202 Sum_probs=211.1
Q ss_pred HHHHHHHhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEec
Q 002349 590 YEDIMRMTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLS 665 (933)
Q Consensus 590 ~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~ 665 (933)
+++.....++|+..+.||+|+||+||+|+.+ +++.||+|++.... ....+.+.+|..++.+++||||+++++++.+
T Consensus 53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 132 (412)
T 2vd5_A 53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD 132 (412)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence 3444455689999999999999999999986 58899999996532 2233457899999999999999999999999
Q ss_pred CCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecc
Q 002349 666 SSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFG 745 (933)
Q Consensus 666 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfG 745 (933)
.+..|+||||+++|+|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||
T Consensus 133 ~~~~~lVmE~~~gg~L~~~l~~--~~~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~vkL~DFG 207 (412)
T 2vd5_A 133 ENYLYLVMEYYVGGDLLTLLSK--FGERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHIRLADFG 207 (412)
T ss_dssp SSEEEEEECCCCSCBHHHHHHH--HSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred CCEEEEEEcCCCCCcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCEEEeech
Confidence 9999999999999999999952 234799999999999999999999966 99999999999999999999999999
Q ss_pred cccccccCCCceeeeecccccccCccccc-------cCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccc
Q 002349 746 IAKSLCVSKSYTSTYIMGTIGYIDPEYAR-------TSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANN 818 (933)
Q Consensus 746 la~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 818 (933)
+++.............+||+.|+|||++. +..++.++|||||||++|||++|+.||.+...............
T Consensus 208 la~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~ 287 (412)
T 2vd5_A 208 SCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKE 287 (412)
T ss_dssp TCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHH
T ss_pred hheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhccc
Confidence 99876544433344568999999999987 35689999999999999999999999987655444332221111
Q ss_pred ccccccCccccccccCHHHHHHHHHHHHHccCCCCCCC---CCHHHHHHHH
Q 002349 819 AVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDR---PTMHEVSRVL 866 (933)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~R---Pt~~evl~~L 866 (933)
... .+.... ..+..+.+++.+|+. +|++| |+++|++++-
T Consensus 288 ~~~---~p~~~~-----~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~Hp 329 (412)
T 2vd5_A 288 HLS---LPLVDE-----GVPEEARDFIQRLLC-PPETRLGRGGAGDFRTHP 329 (412)
T ss_dssp HCC---CC---------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTSG
T ss_pred CcC---CCcccc-----CCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcCC
Confidence 000 011101 123578889999999 99998 6999998753
No 134
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=6.4e-40 Score=361.65 Aligned_cols=266 Identities=25% Similarity=0.376 Sum_probs=209.5
Q ss_pred hccCcceeeecccceeEEEEEE-----cCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEe--cCCccE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVL-----KNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSL--SSSGNL 670 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~--~~~~~~ 670 (933)
++|+..+.||+|+||.||+|.+ ..++.||||++........+.+.+|++++++++||||+++++++. .....+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 102 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR 102 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence 5889999999999999999984 357889999998776666778999999999999999999999887 445688
Q ss_pred EEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccc
Q 002349 671 LFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSL 750 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~ 750 (933)
+||||+++++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 103 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~ 177 (327)
T 3lxl_A 103 LVMEYLPSGCLRDFLQR--HRARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGLAKLL 177 (327)
T ss_dssp EEEECCTTCBHHHHHHH--HGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGGCEEC
T ss_pred EEEeecCCCCHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEcccccceec
Confidence 99999999999999952 235699999999999999999999966 9999999999999999999999999999876
Q ss_pred ccCCCce--eeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcc--------ccc
Q 002349 751 CVSKSYT--STYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTAN--------NAV 820 (933)
Q Consensus 751 ~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~--------~~~ 820 (933)
....... .....||+.|+|||++.+..++.++||||+|+++|+|++|+.||................ ...
T Consensus 178 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (327)
T 3lxl_A 178 PLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELL 257 (327)
T ss_dssp CTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHH
T ss_pred ccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHh
Confidence 4333221 223468888999999999999999999999999999999999987432211100000000 000
Q ss_pred ccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCC
Q 002349 821 METVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAP 873 (933)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 873 (933)
........ ....+..+.+++.+|++.||++|||++|++++|+.+....
T Consensus 258 ~~~~~~~~-----~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 305 (327)
T 3lxl_A 258 EEGQRLPA-----PPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGS 305 (327)
T ss_dssp HTTCCCCC-----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC----
T ss_pred hcccCCCC-----CCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence 00000111 1123467899999999999999999999999999876544
No 135
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=2.1e-39 Score=361.80 Aligned_cols=254 Identities=21% Similarity=0.262 Sum_probs=194.1
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEe
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDF 675 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 675 (933)
.++|...+.||+|+||+||+|+.. +++.||||++.... ...+.+.+|+.++++++||||+++++++...+..++||||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 97 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY 97 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEe
Confidence 358999999999999999999987 57899999997543 2346788999999999999999999999999999999999
Q ss_pred cCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCC--eEEeecccccccccC
Q 002349 676 MENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFE--AHLTDFGIAKSLCVS 753 (933)
Q Consensus 676 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~--~kl~DfGla~~~~~~ 753 (933)
+++|+|.+++. ..+.+++..+..++.|++.||+|||++ +|+||||||+||+++.++. +||+|||+++....
T Consensus 98 ~~~~~L~~~l~---~~~~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~- 170 (361)
T 3uc3_A 98 ASGGELYERIC---NAGRFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVL- 170 (361)
T ss_dssp CCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC------
T ss_pred CCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCccccccc-
Confidence 99999999984 345799999999999999999999966 9999999999999987765 99999999975322
Q ss_pred CCceeeeecccccccCccccccCCCCcc-hhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYARTSRLTEK-SDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
........||+.|+|||++.+..++.+ +||||+||++|+|++|+.||.+.................... .+.
T Consensus 171 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~----~~~-- 243 (361)
T 3uc3_A 171 -HSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYS----IPD-- 243 (361)
T ss_dssp -----------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCC----CCT--
T ss_pred -cCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCC----CCC--
Confidence 222334579999999999988877655 899999999999999999998543322211110000000000 000
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
....+..+.+++.+||+.||++|||++|++++-
T Consensus 244 -~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp 276 (361)
T 3uc3_A 244 -DIRISPECCHLISRIFVADPATRISIPEIKTHS 276 (361)
T ss_dssp -TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTSH
T ss_pred -cCCCCHHHHHHHHHHccCChhHCcCHHHHHhCc
Confidence 001235788999999999999999999999753
No 136
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=4.9e-39 Score=346.15 Aligned_cols=248 Identities=25% Similarity=0.360 Sum_probs=204.3
Q ss_pred hhccCcceeeecccceeEEEEEEcC-CceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 672 (933)
.++|+..+.||+|+||.||+|.+.. ++.||+|++.... ......+.+|++++++++||||+++++++.+.+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 4689999999999999999999765 6789999986532 22356789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
|||+++++|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++.....
T Consensus 88 ~e~~~~~~l~~~l~---~~~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~ 161 (279)
T 3fdn_A 88 LEYAPLGTVYRELQ---KLSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPS 161 (279)
T ss_dssp ECCCTTEEHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEESCC--
T ss_pred EecCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEeccccccCCc
Confidence 99999999999984 346799999999999999999999965 999999999999999999999999999865432
Q ss_pred CCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccc
Q 002349 753 SKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 753 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
. ......|++.|+|||.+.+..++.++||||+|+++|+|++|+.||.................. .+..
T Consensus 162 ~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~--------~~~~- 229 (279)
T 3fdn_A 162 S---RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFT--------FPDF- 229 (279)
T ss_dssp ---------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCC--------CCTT-
T ss_pred c---cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHHHhCCCC--------CCCc-
Confidence 2 223457999999999999999999999999999999999999999866544433322221111 1111
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
.+..+.+++.+|++.||++|||++|++++-
T Consensus 230 ----~~~~~~~li~~~l~~~p~~Rps~~e~l~h~ 259 (279)
T 3fdn_A 230 ----VTEGARDLISRLLKHNPSQRPMLREVLEHP 259 (279)
T ss_dssp ----SCHHHHHHHHHHCCSSGGGSCCHHHHHHCH
T ss_pred ----CCHHHHHHHHHHhccChhhCCCHHHHhhCc
Confidence 235678899999999999999999999753
No 137
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=3.4e-39 Score=371.49 Aligned_cols=259 Identities=20% Similarity=0.228 Sum_probs=200.4
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEeccc--CchhHHHHHHHHHHHhcCCCCceeeeeeEEecCC------
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSH--YPQCLKEFETELETVGSIKHRNLVSLQGYSLSSS------ 667 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~------ 667 (933)
.++|+..+.||+|+||+||+|.+. .++.||||++... .....+++.+|+++++.++|||||++++++....
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 468999999999999999999976 4788999999754 3344677889999999999999999999997654
Q ss_pred ccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccc
Q 002349 668 GNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIA 747 (933)
Q Consensus 668 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla 747 (933)
..++||||+++ ++.+.+. ..+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+|
T Consensus 141 ~~~lv~E~~~~-~l~~~~~-----~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~a 211 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQ-----MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLA 211 (464)
T ss_dssp EEEEEEECCSE-EHHHHHT-----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCCC
T ss_pred eEEEEEeCCCC-CHHHHHh-----hcCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEee
Confidence 46999999976 5767663 2489999999999999999999966 9999999999999999999999999999
Q ss_pred cccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccccc-----
Q 002349 748 KSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVME----- 822 (933)
Q Consensus 748 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~----- 822 (933)
+..... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.....++.......+....
T Consensus 212 ~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~ 289 (464)
T 3ttj_A 212 RTAGTS--FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKK 289 (464)
T ss_dssp -----C--CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTT
T ss_pred eecCCC--cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHH
Confidence 875432 2234568999999999999999999999999999999999999999987666555433221111000
Q ss_pred ----------------------ccCccccccc--cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 823 ----------------------TVDPEISATC--KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 823 ----------------------~~~~~~~~~~--~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
..+....... ........+.+++.+||+.||++|||++|++++-
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp 357 (464)
T 3ttj_A 290 LQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHP 357 (464)
T ss_dssp SCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTST
T ss_pred cchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcCh
Confidence 0000000000 0011246789999999999999999999999854
No 138
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=5.2e-39 Score=346.28 Aligned_cols=255 Identities=23% Similarity=0.321 Sum_probs=204.5
Q ss_pred hhccCcceeeecccceeEEEEEEcC----CceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKN----CKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLL 671 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 671 (933)
.++|...+.||+|+||.||+|.+.. +..||+|++.... ....+.+.+|++++++++||||+++++++.+ +..++
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~ 89 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWI 89 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEE
Confidence 4688999999999999999999653 2359999997653 3456789999999999999999999999865 45789
Q ss_pred EEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 672 FYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
||||+++++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 90 v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 164 (281)
T 3cc6_A 90 IMELYPYGELGHYLER--NKNSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYIE 164 (281)
T ss_dssp EEECCTTCBHHHHHHH--HTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCGGGCC-
T ss_pred EEecCCCCCHHHHHHh--ccccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCCCcccc
Confidence 9999999999999962 345689999999999999999999966 99999999999999999999999999998765
Q ss_pred cCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCccccc
Q 002349 752 VSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEISA 830 (933)
Q Consensus 752 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (933)
...........+++.|+|||.+.+..++.++||||||+++|+|++ |+.||................. .....
T Consensus 165 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~~~~~-------~~~~~ 237 (281)
T 3cc6_A 165 DEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDR-------LPKPD 237 (281)
T ss_dssp --------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHHHTCC-------CCCCT
T ss_pred cccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHhcCCC-------CCCCC
Confidence 443333444567889999999999999999999999999999998 9999975444332222111110 00111
Q ss_pred cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccC
Q 002349 831 TCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSL 869 (933)
Q Consensus 831 ~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~ 869 (933)
..+..+.+++.+|++.||++|||++|+++.|+.+
T Consensus 238 -----~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~ 271 (281)
T 3cc6_A 238 -----LCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDV 271 (281)
T ss_dssp -----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHH
Confidence 1235788999999999999999999999998765
No 139
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=4.5e-39 Score=370.00 Aligned_cols=251 Identities=25% Similarity=0.385 Sum_probs=206.1
Q ss_pred hhccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCC-ccEEEEEe
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSS-GNLLFYDF 675 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-~~~lv~e~ 675 (933)
.++|+..+.||+|+||.||+|.++ ++.||||+++... ..+.|.+|++++++++||||+++++++...+ ..++||||
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~ 268 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 268 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEEC
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEe
Confidence 467888999999999999999986 5799999997653 4578999999999999999999999987665 68999999
Q ss_pred cCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCC
Q 002349 676 MENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKS 755 (933)
Q Consensus 676 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~ 755 (933)
+++|+|.++++. .....+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+++.....
T Consensus 269 ~~~g~L~~~l~~-~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~-- 342 (450)
T 1k9a_A 269 MAKGSLVDYLRS-RGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST-- 342 (450)
T ss_dssp CTTCBHHHHHHH-HCTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC----
T ss_pred cCCCcHHHHHHh-cCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCccccccc--
Confidence 999999999963 1233479999999999999999999976 9999999999999999999999999999854221
Q ss_pred ceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCccccccccC
Q 002349 756 YTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKD 834 (933)
Q Consensus 756 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (933)
.....+++.|+|||++.+..++.++|||||||++|||++ |+.||.+........... .+ .....+.
T Consensus 343 --~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~--~~-----~~~~~p~---- 409 (450)
T 1k9a_A 343 --QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVE--KG-----YKMDAPD---- 409 (450)
T ss_dssp ------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHH--TT-----CCCCCCT----
T ss_pred --ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH--cC-----CCCCCCC----
Confidence 122367889999999999999999999999999999998 999998654333222111 11 1111111
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 835 LGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 835 ~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
.++..+.+++.+||+.||++|||+.++++.|+.+.
T Consensus 410 -~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~ 444 (450)
T 1k9a_A 410 -GCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIR 444 (450)
T ss_dssp -TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 23467899999999999999999999999998764
No 140
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.2e-39 Score=370.11 Aligned_cols=347 Identities=27% Similarity=0.418 Sum_probs=190.8
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceee
Q 002349 91 LKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFG 170 (933)
Q Consensus 91 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 170 (933)
+++|+.|++++|.+. .+| .+..+++|++|||++|.+++..| +.++++|++|+|++|.+++..+ ++++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 445566666666665 344 25566666666666666654332 5666666666666666664333 66666666666
Q ss_pred eecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCCCCccccccceEeccccccccc
Q 002349 171 LRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGK 250 (933)
Q Consensus 171 L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~ 250 (933)
|++|++++..+ +..+++|++|++++|.+++ ++ .++.+++|++|+++ |.+.+..
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~---------------------- 171 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK---------------------- 171 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG----------------------
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch----------------------
Confidence 66666654322 5566666666666666653 22 35666666666654 3332111
Q ss_pred cCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCcccccc
Q 002349 251 IPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKL 330 (933)
Q Consensus 251 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l 330 (933)
.++.+++|++|++++|.+++. ..+..+++|++|++++|.+++..| ++.+++|+.|++++|++++. ..+..+
T Consensus 172 ---~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l 242 (466)
T 1o6v_A 172 ---PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASL 242 (466)
T ss_dssp ---GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred ---hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcC
Confidence 133444444444444444432 124444555555555555544333 44445555555555555432 234455
Q ss_pred ccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeec
Q 002349 331 TDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDM 410 (933)
Q Consensus 331 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 410 (933)
++|+.|++++|++.+..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.|+|
T Consensus 243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 316 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 316 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEEC
T ss_pred CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEEC
Confidence 555555555555554333 5555555666666665554322 5555666666666666654433 555666666666
Q ss_pred cCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCc
Q 002349 411 SNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGD 490 (933)
Q Consensus 411 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 490 (933)
++|++++..| +..+++|+.|++++|++++. ..+.++++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred cCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 6666665443 55666666666666666654 356666666666666666666555 56666666666666666664
Q ss_pred c
Q 002349 491 V 491 (933)
Q Consensus 491 ~ 491 (933)
+
T Consensus 391 p 391 (466)
T 1o6v_A 391 P 391 (466)
T ss_dssp C
T ss_pred c
Confidence 3
No 141
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=3.7e-39 Score=353.27 Aligned_cols=260 Identities=23% Similarity=0.339 Sum_probs=211.6
Q ss_pred hhccCcceeeecccceeEEEEEE------cCCceEEEEEecccCc-hhHHHHHHHHHHHhcC-CCCceeeeeeEEecCCc
Q 002349 597 TENLSEKYIIGYGASSTVYKCVL------KNCKPVAIKRLYSHYP-QCLKEFETELETVGSI-KHRNLVSLQGYSLSSSG 668 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~ 668 (933)
.++|+..+.||+|+||.||+|.+ ..++.||||++..... ...+.+.+|+++++++ +||||+++++++..++.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~ 101 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP 101 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC
Confidence 36889999999999999999985 2357899999976543 3457789999999999 99999999999999999
Q ss_pred cEEEEEecCCCCHHHHhcCCCC---------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEe
Q 002349 669 NLLFYDFMENGSLWDILHGPTK---------------KKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILL 733 (933)
Q Consensus 669 ~~lv~e~~~~gsL~~~l~~~~~---------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll 733 (933)
.++||||+++|+|.+++..... ...+++..++.++.|++.||+|||++ +|+||||||+||++
T Consensus 102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~ 178 (313)
T 1t46_A 102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILL 178 (313)
T ss_dssp CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEE
Confidence 9999999999999999964221 22589999999999999999999976 99999999999999
Q ss_pred CCCCCeEEeecccccccccCCCce-eeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHH
Q 002349 734 DKDFEAHLTDFGIAKSLCVSKSYT-STYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLI 811 (933)
Q Consensus 734 ~~~~~~kl~DfGla~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~ 811 (933)
+.++.+||+|||+++......... .....||+.|+|||.+.+..++.++||||||+++|+|++ |+.||.+........
T Consensus 179 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~ 258 (313)
T 1t46_A 179 THGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFY 258 (313)
T ss_dssp ETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHH
T ss_pred cCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHHH
Confidence 999999999999998765433322 233457889999999999999999999999999999999 999998654433322
Q ss_pred HhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 812 LSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
....... ...... ..+..+.+++.+|++.||++|||++|+++.|+.+.
T Consensus 259 ~~~~~~~------~~~~~~-----~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 306 (313)
T 1t46_A 259 KMIKEGF------RMLSPE-----HAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQI 306 (313)
T ss_dssp HHHHHTC------CCCCCT-----TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHhccCC------CCCCcc-----cCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 2111110 111111 12457889999999999999999999999998754
No 142
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=1.9e-39 Score=360.39 Aligned_cols=265 Identities=15% Similarity=0.222 Sum_probs=201.3
Q ss_pred hccCcceeeecccceeEEEEEEc----CCceEEEEEecccCch-----------hHHHHHHHHHHHhcCCCCceeeeeeE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK----NCKPVAIKRLYSHYPQ-----------CLKEFETELETVGSIKHRNLVSLQGY 662 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~niv~~~~~ 662 (933)
++|...+.||+|+||.||+|.+. .+..||+|++...... ....+.+|+..++.++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 57999999999999999999986 4678999998765322 12346688999999999999999999
Q ss_pred Eec----CCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCC-
Q 002349 663 SLS----SSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDF- 737 (933)
Q Consensus 663 ~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~- 737 (933)
+.. ....++||||+ +++|.+++. ..+.+++.+++.++.|++.||+|||++ +|+||||||+||+++.++
T Consensus 117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~---~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~ 189 (345)
T 2v62_A 117 GLTEFKGRSYRFMVMERL-GIDLQKISG---QNGTFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYKNP 189 (345)
T ss_dssp EEEESSSCEEEEEEEECE-EEEHHHHCB---GGGBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESSST
T ss_pred cccccCCCcEEEEEEecc-CCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccCCC
Confidence 987 67889999999 999999995 334899999999999999999999966 999999999999999887
Q ss_pred -CeEEeecccccccccCCCc------eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHH
Q 002349 738 -EAHLTDFGIAKSLCVSKSY------TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHL 810 (933)
Q Consensus 738 -~~kl~DfGla~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~ 810 (933)
.+||+|||+++.+...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+.......
T Consensus 190 ~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~ 269 (345)
T 2v62_A 190 DQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVA 269 (345)
T ss_dssp TSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHH
T ss_pred CcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHH
Confidence 9999999999876432211 113457999999999999999999999999999999999999999643222211
Q ss_pred HHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 811 ILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
..... .......+.......+....+..+.+++.+||+.||++|||+++|++.|+....
T Consensus 270 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~ 328 (345)
T 2v62_A 270 VQTAK--TNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI 328 (345)
T ss_dssp HHHHH--HHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred HHHHH--HhhcccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence 11110 111111111111111111234679999999999999999999999999998654
No 143
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.6e-39 Score=365.50 Aligned_cols=263 Identities=20% Similarity=0.305 Sum_probs=196.6
Q ss_pred HHhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCC-CCceeeeeeEEecCC--c
Q 002349 595 RMTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIK-HRNLVSLQGYSLSSS--G 668 (933)
Q Consensus 595 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~--~ 668 (933)
...++|+..+.||+|+||.||+|.+. +++.||||++.... ....+++.+|+.+++++. ||||+++++++...+ .
T Consensus 6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~ 85 (388)
T 3oz6_A 6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD 85 (388)
T ss_dssp HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence 45679999999999999999999975 57899999986542 344567889999999997 999999999997544 6
Q ss_pred cEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccc
Q 002349 669 NLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAK 748 (933)
Q Consensus 669 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~ 748 (933)
.++||||++ ++|.+++. ...+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+|+
T Consensus 86 ~~lv~e~~~-~~L~~~~~----~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~ 157 (388)
T 3oz6_A 86 VYLVFDYME-TDLHAVIR----ANILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSR 157 (388)
T ss_dssp EEEEEECCS-EEHHHHHH----HTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred EEEEecccC-cCHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCcccc
Confidence 799999997 58999985 24789999999999999999999966 99999999999999999999999999998
Q ss_pred ccccC--------------------CCceeeeecccccccCcccccc-CCCCcchhhHHHHHHHHHHHhCCCCCCCCcch
Q 002349 749 SLCVS--------------------KSYTSTYIMGTIGYIDPEYART-SRLTEKSDVYSFGIVLLELLTGRKAVDNECNL 807 (933)
Q Consensus 749 ~~~~~--------------------~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~ 807 (933)
.+... ........+||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~ 237 (388)
T 3oz6_A 158 SFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTM 237 (388)
T ss_dssp ESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred cccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 65321 1112234579999999999987 67899999999999999999999999877665
Q ss_pred hHHHHhhhcccccccc----c-------------------Cccccccc-----------cCHHHHHHHHHHHHHccCCCC
Q 002349 808 HHLILSKTANNAVMET----V-------------------DPEISATC-----------KDLGAVKKVFQLALLCSKRQP 853 (933)
Q Consensus 808 ~~~~~~~~~~~~~~~~----~-------------------~~~~~~~~-----------~~~~~~~~l~~li~~cl~~dP 853 (933)
.++.......+..... . ........ .....+..+.+++.+||+.||
T Consensus 238 ~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP 317 (388)
T 3oz6_A 238 NQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNP 317 (388)
T ss_dssp HHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSG
T ss_pred HHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCc
Confidence 5544332111100000 0 00000000 000123578899999999999
Q ss_pred CCCCCHHHHHHH
Q 002349 854 TDRPTMHEVSRV 865 (933)
Q Consensus 854 ~~RPt~~evl~~ 865 (933)
++|||++|++++
T Consensus 318 ~~R~t~~e~l~H 329 (388)
T 3oz6_A 318 NKRISANDALKH 329 (388)
T ss_dssp GGSCCHHHHTTS
T ss_pred ccCCCHHHHhCC
Confidence 999999999986
No 144
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.6e-39 Score=352.71 Aligned_cols=246 Identities=21% Similarity=0.254 Sum_probs=195.7
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcC-CCCceeeeeeEEecCCccEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSI-KHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv 672 (933)
.++|+..++||+|+||+||+|++. +++.||||++.... .....++..|+..+.++ +||||+++++++.+++..++|
T Consensus 56 ~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv 135 (311)
T 3p1a_A 56 QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQ 135 (311)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEE
Confidence 368999999999999999999987 68899999986543 23334455566665555 899999999999999999999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
|||+ +++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+++....
T Consensus 136 ~e~~-~~~L~~~~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~ 209 (311)
T 3p1a_A 136 TELC-GPSLQQHCEA--WGASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGT 209 (311)
T ss_dssp EECC-CCBHHHHHHH--HCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEECC-
T ss_pred Eecc-CCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeeccc
Confidence 9999 6799998853 345799999999999999999999976 999999999999999999999999999987533
Q ss_pred CCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccc
Q 002349 753 SKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 753 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
. .......||+.|+|||++.+ .++.++|||||||++|||++|..|+......... .... ..+.+..
T Consensus 210 ~--~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~-----~~~~----~~~~~~~-- 275 (311)
T 3p1a_A 210 A--GAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQQL-----RQGY----LPPEFTA-- 275 (311)
T ss_dssp -------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHHHH-----TTTC----CCHHHHT--
T ss_pred C--CCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHH-----hccC----CCccccc--
Confidence 2 22334569999999999886 6899999999999999999998777643322211 1111 1111111
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+..+.+++.+|++.||++|||++|++++
T Consensus 276 ---~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 305 (311)
T 3p1a_A 276 ---GLSSELRSVLVMMLEPDPKLRATAEALLAL 305 (311)
T ss_dssp ---TSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred ---CCCHHHHHHHHHHcCCChhhCcCHHHHHhC
Confidence 123678899999999999999999999875
No 145
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.7e-39 Score=369.92 Aligned_cols=346 Identities=27% Similarity=0.374 Sum_probs=286.0
Q ss_pred cCCCCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcE
Q 002349 113 GDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWY 192 (933)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 192 (933)
..+++|+.|++++|.+. .+| .+..+++|++|+|++|.+++..| ++++++|++|+|++|++.+..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 34677888888888876 455 37778888888888888875443 7788888888888888875544 777788888
Q ss_pred EeccCccccCccCcCCcCCCCCcEEccccccccCcCCCCccccccceEeccccccccccCccccccccccEEeccCCcCc
Q 002349 193 FDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLS 272 (933)
Q Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 272 (933)
|++++|.+++..+ +.++++|++|++++|++++ ++ .++.+++|+.|+++ |.+.
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~------------------------~~-~~~~l~~L~~L~l~-~~~~ 168 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD------------------------IS-ALSGLTSLQQLSFG-NQVT 168 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC------------------------CG-GGTTCTTCSEEEEE-ESCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCC------------------------Ch-hhccCCcccEeecC-Cccc
Confidence 8888887775432 7777777777777776652 12 36778899999996 5565
Q ss_pred CCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccccccccccccccccCCCCCCCCcc
Q 002349 273 GPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLS 352 (933)
Q Consensus 273 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 352 (933)
+..+ +.++++|+.|++++|.+++. ..+..+++|++|++++|.+++..| ++.+++|+.|++++|++.+. ..+.
T Consensus 169 ~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~ 240 (466)
T 1o6v_A 169 DLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLA 240 (466)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred Cchh--hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhh
Confidence 4433 89999999999999999864 358899999999999999997655 78899999999999999854 4688
Q ss_pred cCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccc
Q 002349 353 SCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKL 432 (933)
Q Consensus 353 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 432 (933)
.+++|+.|++++|++++..+ +..+++|++|++++|.+++..+ +..+++|+.|+|++|++++..+ +..+++|+.|
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 99999999999999997654 8899999999999999997655 8899999999999999997654 8899999999
Q ss_pred cccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcccchhhccccc-eeecCCCCCC
Q 002349 433 NLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSLINCLSLS-VLFIGNPGLC 511 (933)
Q Consensus 433 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~-~~~~~N~~~C 511 (933)
+|++|++++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++.+| +..+..+. +.+.+|+|..
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 999999998876 88999999999999999976 478999999999999999999887 67777776 6677887765
No 146
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=356.14 Aligned_cols=262 Identities=20% Similarity=0.262 Sum_probs=199.6
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccCch-hHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEe
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQ-CLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDF 675 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 675 (933)
++|...+.||+|+||+||+|.+. +++.||||++...... ....+.+|++++++++||||+++++++...+..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 57889999999999999999976 5789999999654321 222456799999999999999999999999999999999
Q ss_pred cCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCC
Q 002349 676 MENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKS 755 (933)
Q Consensus 676 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~ 755 (933)
++ |+|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++..... .
T Consensus 82 ~~-~~l~~~~~~--~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~-~ 154 (324)
T 3mtl_A 82 LD-KDLKQYLDD--CGNIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIP-T 154 (324)
T ss_dssp CS-EEHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC-----
T ss_pred cc-cCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccccCC-c
Confidence 97 589988863 345699999999999999999999966 9999999999999999999999999999865322 2
Q ss_pred ceeeeecccccccCcccccc-CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccc---
Q 002349 756 YTSTYIMGTIGYIDPEYART-SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISAT--- 831 (933)
Q Consensus 756 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 831 (933)
.......||+.|+|||++.+ ..++.++||||+||++|+|++|+.||.+..............+.......+.....
T Consensus 155 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 234 (324)
T 3mtl_A 155 KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEF 234 (324)
T ss_dssp --------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHH
T ss_pred cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhh
Confidence 22334578999999999876 56899999999999999999999999876655544433222111111111110000
Q ss_pred ---------c-----cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 832 ---------C-----KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 832 ---------~-----~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
. ........+.+++.+|++.||++|||++|++++-
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp 283 (324)
T 3mtl_A 235 KTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHP 283 (324)
T ss_dssp HHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSG
T ss_pred cccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcCh
Confidence 0 0001235788999999999999999999999743
No 147
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=6.5e-39 Score=362.49 Aligned_cols=265 Identities=20% Similarity=0.262 Sum_probs=206.0
Q ss_pred hhccCcceeeecc--cceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEE
Q 002349 597 TENLSEKYIIGYG--ASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLL 671 (933)
Q Consensus 597 ~~~~~~~~~lG~G--~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 671 (933)
.++|+..+.||+| +||+||+|+++ +++.||||++.... ....+.+.+|++++++++|||||++++++..++..++
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 103 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV 103 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence 3589999999999 99999999987 58899999997543 3445678899999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 672 FYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
||||+++|+|.+++.. .....+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||.+....
T Consensus 104 v~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~ 179 (389)
T 3gni_B 104 VTSFMAYGSAKDLICT-HFMDGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMI 179 (389)
T ss_dssp EEECCTTCBHHHHHHH-TCTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGCEECE
T ss_pred EEEccCCCCHHHHHhh-hcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccceeec
Confidence 9999999999999964 2235699999999999999999999966 99999999999999999999999999986542
Q ss_pred cCCC------ceeeeecccccccCcccccc--CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccc-cc
Q 002349 752 VSKS------YTSTYIMGTIGYIDPEYART--SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAV-ME 822 (933)
Q Consensus 752 ~~~~------~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~-~~ 822 (933)
.... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+................. .+
T Consensus 180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~ 259 (389)
T 3gni_B 180 SHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLD 259 (389)
T ss_dssp ETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC----------
T ss_pred cccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCcccc
Confidence 2111 11222478999999999987 579999999999999999999999998655444332211110000 00
Q ss_pred c------------------------cC--------ccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 823 T------------------------VD--------PEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 823 ~------------------------~~--------~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
. .. ............+..+.+++.+||+.||++|||++|++++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~h 334 (389)
T 3gni_B 260 TSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNH 334 (389)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred ccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcC
Confidence 0 00 0000000011123568899999999999999999999975
No 148
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.2e-38 Score=365.75 Aligned_cols=354 Identities=27% Similarity=0.336 Sum_probs=268.1
Q ss_pred CCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccch-------------hhhhhcccC
Q 002349 85 SPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQL-------------EFLILKNNQ 151 (933)
Q Consensus 85 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------------~~L~L~~n~ 151 (933)
.|.-...++|++|++++|++ |.+|++|+++++|++|+|++|.+.|.+|.+++++++| ++|++++|.
T Consensus 4 ~p~~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 4 NPRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred cccccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 34444568999999999999 7999999999999999999999999999999999886 888999999
Q ss_pred ccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCCCC
Q 002349 152 LIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFN 231 (933)
Q Consensus 152 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 231 (933)
+++ +|.. .++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++ +|..
T Consensus 83 l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp~~ 149 (454)
T 1jl5_A 83 LSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LPEL 149 (454)
T ss_dssp CSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CCCC
T ss_pred ccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cccc
Confidence 886 4542 3789999999999997 6643 4889999999999985 3332 2689999999999996 7754
Q ss_pred ccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceE
Q 002349 232 IGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHY 311 (933)
Q Consensus 232 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 311 (933)
....+|++|++++|++++ +|..+ .+|++|++++|++++ +| .++++++|++|++++|++++ +|... ++|++
T Consensus 150 ~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~ 219 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLES 219 (454)
T ss_dssp TTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCE
T ss_pred CCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccE
Confidence 445589999999999996 55543 589999999999997 45 68999999999999999996 45433 58999
Q ss_pred eeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccc
Q 002349 312 LELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNI 391 (933)
Q Consensus 312 L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 391 (933)
|++++|+++ .+| .++.+++|+.|++++|++++ +|.. +++|+.|++++|++++ +|.. +++|++|++++|++
T Consensus 220 L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 220 IVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIF 289 (454)
T ss_dssp EECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred EECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCcc
Confidence 999999999 667 48999999999999999985 4543 4789999999999996 4543 37899999999999
Q ss_pred cCCCccccccccccceeeccCCccCCCCCCCCCCc-cccccccccCcccccccccccccccccceEEccCCccccccchh
Q 002349 392 RGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDL-EHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEE 470 (933)
Q Consensus 392 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 470 (933)
++. |.. .++|+.|++++|++++ ++ .+ ++|+.|++++|++++ +|.. +++|++|++++|++++ +|.
T Consensus 290 ~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~- 354 (454)
T 1jl5_A 290 SGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE- 354 (454)
T ss_dssp SEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC-
T ss_pred Ccc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc-
Confidence 863 211 2689999999999985 22 23 589999999999996 5654 5889999999999995 665
Q ss_pred hccccccceeeecCCCCcC
Q 002349 471 LSQLQNMFSLRLDYNNLSG 489 (933)
Q Consensus 471 ~~~l~~L~~L~l~~N~l~~ 489 (933)
.+++|++|++++|++++
T Consensus 355 --~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 355 --LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp --CCTTCCEEECCSSCCSS
T ss_pred --hhhhccEEECCCCCCCc
Confidence 57899999999999999
No 149
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.8e-39 Score=350.86 Aligned_cols=262 Identities=24% Similarity=0.298 Sum_probs=203.0
Q ss_pred hhccCcceeeecccceeEEEEEEcC-CceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
.++|+..+.||+|+||+||+|.+.. ++.||||++.... ....+.+.+|++++++++||||+++++++...+..++||
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 81 (311)
T 4agu_A 2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVF 81 (311)
T ss_dssp -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEE
Confidence 3679999999999999999999864 8899999986543 233566889999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
||+++++|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 82 e~~~~~~l~~~~~---~~~~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 155 (311)
T 4agu_A 82 EYCDHTVLHELDR---YQRGVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTGP 155 (311)
T ss_dssp ECCSEEHHHHHHH---TSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC--
T ss_pred EeCCCchHHHHHh---hhcCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhccCc
Confidence 9999999999884 356799999999999999999999976 9999999999999999999999999999876432
Q ss_pred CCceeeeecccccccCcccccc-CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccc-----------
Q 002349 754 KSYTSTYIMGTIGYIDPEYART-SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVM----------- 821 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~----------- 821 (933)
.. ......||+.|+|||++.+ ..++.++||||+|+++|+|++|+.||.+..................
T Consensus 156 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (311)
T 4agu_A 156 SD-YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQ 234 (311)
T ss_dssp -----------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCG
T ss_pred cc-ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhccccccccccccccc
Confidence 22 2334578999999999976 5689999999999999999999999987665544433221111100
Q ss_pred --cccCccccccccC-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 822 --ETVDPEISATCKD-----LGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 822 --~~~~~~~~~~~~~-----~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
............. ...+..+.+++.+|++.||++|||++|++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 285 (311)
T 4agu_A 235 YFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHH 285 (311)
T ss_dssp GGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred ccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence 0000000000000 1124568899999999999999999999975
No 150
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=7.1e-39 Score=354.32 Aligned_cols=260 Identities=22% Similarity=0.373 Sum_probs=210.6
Q ss_pred hhccCcceeeecccceeEEEEEEc--------CCceEEEEEecccC-chhHHHHHHHHHHHhcC-CCCceeeeeeEEecC
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK--------NCKPVAIKRLYSHY-PQCLKEFETELETVGSI-KHRNLVSLQGYSLSS 666 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~ 666 (933)
.++|...+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+++++++ +||||+++++++...
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 468999999999999999999974 45789999997653 34567789999999999 899999999999999
Q ss_pred CccEEEEEecCCCCHHHHhcCCCC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEe
Q 002349 667 SGNLLFYDFMENGSLWDILHGPTK-------------KKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILL 733 (933)
Q Consensus 667 ~~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll 733 (933)
+..++||||+++|+|.+++..... ...+++..++.++.|++.||+|||++ +|+||||||+||++
T Consensus 114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll 190 (334)
T 2pvf_A 114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLV 190 (334)
T ss_dssp SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEE
T ss_pred CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCccceEEE
Confidence 999999999999999999964321 23589999999999999999999966 99999999999999
Q ss_pred CCCCCeEEeecccccccccCCCce-eeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHH
Q 002349 734 DKDFEAHLTDFGIAKSLCVSKSYT-STYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLI 811 (933)
Q Consensus 734 ~~~~~~kl~DfGla~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~ 811 (933)
+.++.+||+|||+++......... .....+|+.|+|||++.+..++.++||||||+++|||++ |+.||.+........
T Consensus 191 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~ 270 (334)
T 2pvf_A 191 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFK 270 (334)
T ss_dssp CTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHH
T ss_pred cCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHHH
Confidence 999999999999998764332222 233457889999999999889999999999999999999 999997654333221
Q ss_pred HhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 812 LSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
.... .. ...... ..+..+.+++.+||+.||++|||++|+++.|+.+..
T Consensus 271 ~~~~--~~-----~~~~~~-----~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~ 318 (334)
T 2pvf_A 271 LLKE--GH-----RMDKPA-----NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILT 318 (334)
T ss_dssp HHHH--TC-----CCCCCT-----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHhc--CC-----CCCCCc-----cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 1111 10 011111 123578899999999999999999999999987754
No 151
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=9.2e-39 Score=355.10 Aligned_cols=267 Identities=25% Similarity=0.252 Sum_probs=203.3
Q ss_pred HHHhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCc-----hhHHHHHHHHHHHhcCCCCceeeeeeEEecCC
Q 002349 594 MRMTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYP-----QCLKEFETELETVGSIKHRNLVSLQGYSLSSS 667 (933)
Q Consensus 594 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 667 (933)
....++|+..+.||+|+||.||+|.+. +++.||||++..... ...+.+.+|++++++++||||+++++++...+
T Consensus 6 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 85 (346)
T 1ua2_A 6 KSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS 85 (346)
T ss_dssp -------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred HHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCC
Confidence 344678999999999999999999976 478999999965321 12346789999999999999999999999999
Q ss_pred ccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccc
Q 002349 668 GNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIA 747 (933)
Q Consensus 668 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla 747 (933)
..++||||+++ +|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 86 ~~~lv~e~~~~-~l~~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a 159 (346)
T 1ua2_A 86 NISLVFDFMET-DLEVIIKD--NSLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLA 159 (346)
T ss_dssp CCEEEEECCSE-EHHHHHTT--CCSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGG
T ss_pred ceEEEEEcCCC-CHHHHHHh--cCcCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEecccc
Confidence 99999999986 89888853 445789999999999999999999976 9999999999999999999999999999
Q ss_pred cccccCCCceeeeecccccccCccccccC-CCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCc
Q 002349 748 KSLCVSKSYTSTYIMGTIGYIDPEYARTS-RLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDP 826 (933)
Q Consensus 748 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (933)
+...... .......||+.|+|||++.+. .++.++||||+||++|||++|..||.+..............+.......+
T Consensus 160 ~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 238 (346)
T 1ua2_A 160 KSFGSPN-RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWP 238 (346)
T ss_dssp STTTSCC-CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSS
T ss_pred eeccCCc-ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhh
Confidence 8764322 223345789999999998764 58999999999999999999999998776655544332221111111111
Q ss_pred ccccc---------c-cC-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHc
Q 002349 827 EISAT---------C-KD-----LGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLG 867 (933)
Q Consensus 827 ~~~~~---------~-~~-----~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~ 867 (933)
..... . .. ...+..+.+++.+|++.||++|||++|++++-.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~~ 294 (346)
T 1ua2_A 239 DMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKY 294 (346)
T ss_dssp STTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGG
T ss_pred hhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcChh
Confidence 00000 0 00 112367899999999999999999999998654
No 152
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=7e-39 Score=344.71 Aligned_cols=250 Identities=26% Similarity=0.368 Sum_probs=185.1
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 672 (933)
.++|...+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 368999999999999999999974 68899999996532 22347789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
|||+++++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++.....
T Consensus 90 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~ 164 (278)
T 3cok_A 90 LEMCHNGEMNRYLKN--RVKPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLKM 164 (278)
T ss_dssp EECCTTEEHHHHHHT--CSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEECC-
T ss_pred EecCCCCcHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceeeccC
Confidence 999999999999963 346799999999999999999999976 999999999999999999999999999987643
Q ss_pred CCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccc
Q 002349 753 SKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 753 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
... ......||+.|+|||.+.+..++.++||||+|+++|+|++|+.||............... +...+.
T Consensus 165 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~--------~~~~~~-- 233 (278)
T 3cok_A 165 PHE-KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLA--------DYEMPS-- 233 (278)
T ss_dssp ----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-----CCSS--------CCCCCT--
T ss_pred CCC-cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHHHHHhhc--------ccCCcc--
Confidence 222 223457899999999999988999999999999999999999999865432222111100 001111
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+..+.+++.+|++.||++|||+++++++
T Consensus 234 ---~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 263 (278)
T 3cok_A 234 ---FLSIEAKDLIHQLLRRNPADRLSLSSVLDH 263 (278)
T ss_dssp ---TSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred ---ccCHHHHHHHHHHcccCHhhCCCHHHHhcC
Confidence 123578899999999999999999999874
No 153
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=2.9e-39 Score=371.76 Aligned_cols=250 Identities=21% Similarity=0.236 Sum_probs=198.8
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEeccc---CchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSH---YPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 672 (933)
.++|+..+.||+|+||.||+|... +++.||||++... .......+.+|++++++++||||+++++++...+..++|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 468999999999999999999976 5789999999753 233446678899999999999999999999999999999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCCeeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHH-DCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~-~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
|||+++|+|.+++. ....+++..+..++.|++.||+|||+ . +|+||||||+|||++.++.+||+|||+|+...
T Consensus 227 ~e~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 300 (446)
T 4ejn_A 227 MEYANGGELFFHLS---RERVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGI 300 (446)
T ss_dssp ECCCSSCBHHHHHH---HHSCCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCCCCTTC
T ss_pred EeeCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCCceecc
Confidence 99999999999995 34679999999999999999999996 4 99999999999999999999999999998643
Q ss_pred cCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccc
Q 002349 752 VSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISAT 831 (933)
Q Consensus 752 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (933)
.. .......+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.................. .
T Consensus 301 ~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p--------~- 370 (446)
T 4ejn_A 301 KD-GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFP--------R- 370 (446)
T ss_dssp C------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCC--------T-
T ss_pred CC-CcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCC--------c-
Confidence 22 2233456899999999999999999999999999999999999999987654443333222211111 1
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHHH
Q 002349 832 CKDLGAVKKVFQLALLCSKRQPTDRP-----TMHEVSRVL 866 (933)
Q Consensus 832 ~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~evl~~L 866 (933)
..+..+.+++.+||+.||++|| +++|++++-
T Consensus 371 ----~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~hp 406 (446)
T 4ejn_A 371 ----TLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHR 406 (446)
T ss_dssp ----TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSG
T ss_pred ----cCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhCc
Confidence 1135688999999999999999 999998743
No 154
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=1.8e-39 Score=357.41 Aligned_cols=265 Identities=23% Similarity=0.360 Sum_probs=213.9
Q ss_pred HHHHHhhccCcceeeecccceeEEEEEEc------CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEe
Q 002349 592 DIMRMTENLSEKYIIGYGASSTVYKCVLK------NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSL 664 (933)
Q Consensus 592 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~ 664 (933)
++....++|...+.||+|+||.||+|.+. .++.||+|++.... ......+.+|++++++++||||+++++++.
T Consensus 19 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~ 98 (322)
T 1p4o_A 19 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVS 98 (322)
T ss_dssp TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEEC
T ss_pred hhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEc
Confidence 33445678999999999999999999865 26789999997653 334567899999999999999999999999
Q ss_pred cCCccEEEEEecCCCCHHHHhcCC-------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCC
Q 002349 665 SSSGNLLFYDFMENGSLWDILHGP-------TKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDF 737 (933)
Q Consensus 665 ~~~~~~lv~e~~~~gsL~~~l~~~-------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~ 737 (933)
..+..++||||+++|+|.++++.. .....+++..++.++.|++.||+|||++ +|+||||||+||+++.++
T Consensus 99 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NIli~~~~ 175 (322)
T 1p4o_A 99 QGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDF 175 (322)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTC
T ss_pred cCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceEEEcCCC
Confidence 999999999999999999998531 1124679999999999999999999976 999999999999999999
Q ss_pred CeEEeecccccccccCCCce-eeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhh
Q 002349 738 EAHLTDFGIAKSLCVSKSYT-STYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKT 815 (933)
Q Consensus 738 ~~kl~DfGla~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~ 815 (933)
.+||+|||+++......... .....||+.|+|||++.+..++.++||||+|+++|+|++ |+.||.+...........
T Consensus 176 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~- 254 (322)
T 1p4o_A 176 TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVM- 254 (322)
T ss_dssp CEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHH-
T ss_pred eEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHHHHHHHH-
Confidence 99999999998654332211 223457889999999999999999999999999999999 889997654333222211
Q ss_pred cccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 816 ANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
..... ... ...+..+.+++.+|++.||++|||+.|+++.|+....
T Consensus 255 -~~~~~-----~~~-----~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~ 299 (322)
T 1p4o_A 255 -EGGLL-----DKP-----DNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME 299 (322)
T ss_dssp -TTCCC-----CCC-----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred -cCCcC-----CCC-----CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence 11111 011 1124578899999999999999999999999988754
No 155
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.8e-39 Score=355.29 Aligned_cols=258 Identities=27% Similarity=0.436 Sum_probs=203.3
Q ss_pred hccCcceeeecccceeEEEEEEcC-----CceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKN-----CKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLL 671 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 671 (933)
++|...+.||+|+||.||+|.+.. +..||||++.... ......+.+|++++++++||||+++++++...+..++
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 123 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI 123 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence 456677899999999999999653 2359999997653 3345678999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 672 FYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
||||+++|+|.+++.. ....+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 124 v~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~ 198 (333)
T 1mqb_A 124 ITEYMENGALDKFLRE--KDGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLE 198 (333)
T ss_dssp EEECCTTEEHHHHHHH--TTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC-----
T ss_pred EEeCCCCCcHHHHHHh--CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcchhhc
Confidence 9999999999999963 346799999999999999999999976 99999999999999999999999999998764
Q ss_pred cCCCc--eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCccc
Q 002349 752 VSKSY--TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEI 828 (933)
Q Consensus 752 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (933)
..... ......+|+.|+|||.+.+..++.++||||||+++|||++ |+.||............. ... ....
T Consensus 199 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~--~~~-----~~~~ 271 (333)
T 1mqb_A 199 DDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAIN--DGF-----RLPT 271 (333)
T ss_dssp ------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHH--TTC-----CCCC
T ss_pred cccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHHHHH--CCC-----cCCC
Confidence 32221 1223356789999999999999999999999999999999 999997654433222111 110 0011
Q ss_pred cccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCC
Q 002349 829 SATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPA 872 (933)
Q Consensus 829 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 872 (933)
. ...+..+.+++.+||+.||++||+++++++.|+.+...
T Consensus 272 ~-----~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~ 310 (333)
T 1mqb_A 272 P-----MDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA 310 (333)
T ss_dssp C-----TTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred c-----ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 1 12245788999999999999999999999999876543
No 156
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-39 Score=350.50 Aligned_cols=263 Identities=22% Similarity=0.221 Sum_probs=202.6
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC-----chhHHHHHHHHHHHhcCC---CCceeeeeeEEecC
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY-----PQCLKEFETELETVGSIK---HRNLVSLQGYSLSS 666 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~---h~niv~~~~~~~~~ 666 (933)
..++|+..+.||+|+||+||+|++. +++.||||++.... ......+.+|++++++++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 4578999999999999999999964 57899999986432 122356677888777764 99999999999776
Q ss_pred C-----ccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEE
Q 002349 667 S-----GNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHL 741 (933)
Q Consensus 667 ~-----~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl 741 (933)
. ..++||||+. ++|.+++.. .....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~-~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl 161 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDK-APPPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVKL 161 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHT-CCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEEE
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhh-ccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEE
Confidence 5 4789999997 599999964 2234599999999999999999999976 9999999999999999999999
Q ss_pred eecccccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccc
Q 002349 742 TDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVM 821 (933)
Q Consensus 742 ~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 821 (933)
+|||+++..... .......||+.|+|||++.+..++.++||||+||++|+|++|+.||.+..............+...
T Consensus 162 ~Dfg~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~ 239 (308)
T 3g33_A 162 ADFGLARIYSYQ--MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPP 239 (308)
T ss_dssp CSCSCTTTSTTC--CCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred eeCccccccCCC--cccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCC
Confidence 999999865322 223445799999999999999999999999999999999999999987665554433322111111
Q ss_pred cccCcc--------cccc-ccC-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 822 ETVDPE--------ISAT-CKD-----LGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 822 ~~~~~~--------~~~~-~~~-----~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
....+. +... ... ......+.+++.+|++.||++|||++|++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 297 (308)
T 3g33_A 240 EDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH 297 (308)
T ss_dssp TTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred hhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence 100000 0000 000 0123678899999999999999999999875
No 157
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=1.2e-38 Score=343.89 Aligned_cols=251 Identities=25% Similarity=0.345 Sum_probs=205.3
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCc------hhHHHHHHHHHHHhcCCCCceeeeeeEEecCCcc
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYP------QCLKEFETELETVGSIKHRNLVSLQGYSLSSSGN 669 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 669 (933)
.++|+..+.||+|+||.||+|.+. +++.||+|++..... ...+.+.+|++++++++||||+++++++......
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 83 (283)
T 3bhy_A 4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDV 83 (283)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeE
Confidence 467999999999999999999987 588999999865431 1367899999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCC----CeEEeecc
Q 002349 670 LLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDF----EAHLTDFG 745 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~----~~kl~DfG 745 (933)
++||||+++++|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++ .+||+|||
T Consensus 84 ~lv~e~~~~~~L~~~l~---~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg 157 (283)
T 3bhy_A 84 VLILELVSGGELFDFLA---EKESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDFG 157 (283)
T ss_dssp EEEEECCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEECCCT
T ss_pred EEEEeecCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEEEecc
Confidence 99999999999999994 345799999999999999999999966 999999999999998877 89999999
Q ss_pred cccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccC
Q 002349 746 IAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVD 825 (933)
Q Consensus 746 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (933)
++....... ......|++.|+|||++.+..++.++||||||+++|+|++|+.||................... +
T Consensus 158 ~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~----~ 231 (283)
T 3bhy_A 158 IAHKIEAGN--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDF----D 231 (283)
T ss_dssp TCEECC----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCC----C
T ss_pred cceeccCCC--cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHHHhHhcccCC----c
Confidence 998764322 2234569999999999999999999999999999999999999998765544333222111111 1
Q ss_pred ccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002349 826 PEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSR 864 (933)
Q Consensus 826 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~ 864 (933)
+.... ..+..+.+++.+|++.||++|||++|+++
T Consensus 232 ~~~~~-----~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 265 (283)
T 3bhy_A 232 EEYFS-----NTSELAKDFIRRLLVKDPKRRMTIAQSLE 265 (283)
T ss_dssp HHHHT-----TCCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred chhcc-----cCCHHHHHHHHHHccCCHhHCcCHHHHHh
Confidence 11111 12356889999999999999999999997
No 158
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=1.6e-39 Score=363.95 Aligned_cols=265 Identities=18% Similarity=0.238 Sum_probs=204.0
Q ss_pred hhccCcceeeecccceeEEEEEEcC------CceEEEEEecccCchhH-----------HHHHHHHHHHhcCCCCceeee
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKN------CKPVAIKRLYSHYPQCL-----------KEFETELETVGSIKHRNLVSL 659 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~~~-----------~~~~~E~~~l~~l~h~niv~~ 659 (933)
.++|+..+.||+|+||.||+|.+.. ++.||||++........ ..+.+|+..++.++||||+++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~ 113 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY 113 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence 4589999999999999999999865 37899999876542211 123456677788899999999
Q ss_pred eeEEecC----CccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeC-
Q 002349 660 QGYSLSS----SGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLD- 734 (933)
Q Consensus 660 ~~~~~~~----~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~- 734 (933)
++++... ...++||||+ +++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+|||++
T Consensus 114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~--~~~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill~~ 187 (364)
T 3op5_A 114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEA--NAKRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLLNY 187 (364)
T ss_dssp EEEEEEEETTEEEEEEEEECE-EEEHHHHHHH--TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEES
T ss_pred EeeeeeccCCcceEEEEEeCC-CCCHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEEec
Confidence 9998764 4479999999 9999999963 346799999999999999999999966 999999999999999
Q ss_pred -CCCCeEEeecccccccccCCCce------eeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcch
Q 002349 735 -KDFEAHLTDFGIAKSLCVSKSYT------STYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNL 807 (933)
Q Consensus 735 -~~~~~kl~DfGla~~~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~ 807 (933)
.++.+||+|||+++.+....... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.+....
T Consensus 188 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~ 267 (364)
T 3op5_A 188 KNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD 267 (364)
T ss_dssp SCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC
T ss_pred CCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC
Confidence 88999999999998764322211 13345999999999999999999999999999999999999999854333
Q ss_pred hHHHHhhhcc--cccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 808 HHLILSKTAN--NAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 808 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
.......... ....+..++.+. ....+..+.+++..|++.||++||++++|++.|+.+..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~ 329 (364)
T 3op5_A 268 PKYVRDSKIRYRENIASLMDKCFP----AANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLK 329 (364)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHSC----TTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHhcc----cccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 3222111110 111111111110 11224678999999999999999999999999877644
No 159
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=1.4e-38 Score=341.92 Aligned_cols=254 Identities=22% Similarity=0.325 Sum_probs=207.1
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
..++|+..+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+.++++++||||+++++++.+++..++||
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 84 (276)
T 2yex_A 5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL 84 (276)
T ss_dssp HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEE
Confidence 4578999999999999999999976 57899999986543 344577899999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
||+++++|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.+......
T Consensus 85 e~~~~~~L~~~l~---~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 158 (276)
T 2yex_A 85 EYCSGGELFDRIE---PDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYN 158 (276)
T ss_dssp ECCTTEEGGGGSB---TTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEET
T ss_pred EecCCCcHHHHHh---hccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccccCCC
Confidence 9999999999994 456799999999999999999999976 9999999999999999999999999999865332
Q ss_pred CC-ceeeeecccccccCccccccCCC-CcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccc
Q 002349 754 KS-YTSTYIMGTIGYIDPEYARTSRL-TEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISAT 831 (933)
Q Consensus 754 ~~-~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (933)
.. .......||+.|+|||.+.+..+ +.++||||+|+++|+|++|+.||.................... +..
T Consensus 159 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~----~~~--- 231 (276)
T 2yex_A 159 NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYL----NPW--- 231 (276)
T ss_dssp TEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTS----TTG---
T ss_pred cchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhccccc----Cch---
Confidence 21 12334578999999999988765 7899999999999999999999986543322211111111100 000
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 832 CKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 832 ~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
...+..+.+++.+|++.||++|||++|++++
T Consensus 232 ---~~~~~~~~~li~~~l~~~p~~Rps~~~il~~ 262 (276)
T 2yex_A 232 ---KKIDSAPLALLHKILVENPSARITIPDIKKD 262 (276)
T ss_dssp ---GGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred ---hhcCHHHHHHHHHHCCCCchhCCCHHHHhcC
Confidence 0123568889999999999999999999875
No 160
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.4e-39 Score=353.78 Aligned_cols=257 Identities=26% Similarity=0.367 Sum_probs=201.6
Q ss_pred hccCcceeeecccceeEEEEEEcC-Cc----eEEEEEeccc-CchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKN-CK----PVAIKRLYSH-YPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLL 671 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~----~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 671 (933)
++|+..+.||+|+||.||+|.+.. ++ +||+|.+... .....+.+.+|++++++++||||+++++++..+. .++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~ 93 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL 93 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEE
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceE
Confidence 578999999999999999999653 33 3577877543 3445678999999999999999999999998764 789
Q ss_pred EEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 672 FYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
|+||+++|+|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 94 v~~~~~~g~L~~~l~~--~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~ 168 (327)
T 3lzb_A 94 ITQLMPFGCLLDYVRE--HKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168 (327)
T ss_dssp EECCCSSCBHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC-----
T ss_pred EEEecCCCcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcceeEcc
Confidence 9999999999999963 356799999999999999999999976 99999999999999999999999999998764
Q ss_pred cCCC-ceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCcccc
Q 002349 752 VSKS-YTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEIS 829 (933)
Q Consensus 752 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (933)
.... .......||+.|+|||.+.+..++.++|||||||++|||++ |+.||.+.............. . ...+
T Consensus 169 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~-~------~~~~ 241 (327)
T 3lzb_A 169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGE-R------LPQP 241 (327)
T ss_dssp -----------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTC-C------CCCC
T ss_pred CccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCC-C------CCCC
Confidence 3222 22233457889999999999999999999999999999999 999998654433322211111 0 0011
Q ss_pred ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCC
Q 002349 830 ATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPA 872 (933)
Q Consensus 830 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 872 (933)
. ..+..+.+++.+||+.||++|||++|+++.|+.+...
T Consensus 242 ~-----~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 279 (327)
T 3lzb_A 242 P-----ICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp T-----TBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred c-----cCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence 1 1235788999999999999999999999999887643
No 161
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.1e-38 Score=344.82 Aligned_cols=256 Identities=22% Similarity=0.329 Sum_probs=208.7
Q ss_pred hccCcce-eeecccceeEEEEEEc---CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEE
Q 002349 598 ENLSEKY-IIGYGASSTVYKCVLK---NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 598 ~~~~~~~-~lG~G~~g~Vy~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 672 (933)
++|...+ .||+|+||.||+|.+. .++.||||++.... ....+.+.+|++++++++||||+++++++ ..+..++|
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv 87 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLV 87 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEE
Confidence 4566665 8999999999999864 56789999997653 34567799999999999999999999999 45568999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
|||+++++|.+++. .....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 88 ~e~~~~~~L~~~l~--~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~ 162 (287)
T 1u59_A 88 MEMAGGGPLHKFLV--GKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGA 162 (287)
T ss_dssp EECCTTEEHHHHHT--TCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECTT
T ss_pred EEeCCCCCHHHHHH--hCCccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceeeecc
Confidence 99999999999995 3456799999999999999999999976 999999999999999999999999999987643
Q ss_pred CCCce--eeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCcccc
Q 002349 753 SKSYT--STYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEIS 829 (933)
Q Consensus 753 ~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (933)
..... .....||+.|+|||++.+..++.++||||||+++|||++ |+.||.............. .. .+..+
T Consensus 163 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i~~--~~-----~~~~~ 235 (287)
T 1u59_A 163 DDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQ--GK-----RMECP 235 (287)
T ss_dssp CSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHT--TC-----CCCCC
T ss_pred CcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHhc--CC-----cCCCC
Confidence 33222 223356889999999998889999999999999999998 9999986554333222111 11 11111
Q ss_pred ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 830 ATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 830 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
. ..+..+.+++.+||+.||++||++.++++.|+.+..
T Consensus 236 ~-----~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 272 (287)
T 1u59_A 236 P-----ECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYY 272 (287)
T ss_dssp T-----TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred C-----CcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 1 224678899999999999999999999999987654
No 162
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=1.7e-39 Score=354.11 Aligned_cols=262 Identities=26% Similarity=0.410 Sum_probs=204.3
Q ss_pred hccCcceeeecccceeEEEEEE-----cCCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecC--Ccc
Q 002349 598 ENLSEKYIIGYGASSTVYKCVL-----KNCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSS--SGN 669 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--~~~ 669 (933)
++|+..+.||+|+||.||+|++ ..++.||||++.... ....+.+.+|++++++++||||+++++++... ...
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 100 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 100 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence 4688889999999999999984 357899999997543 34457899999999999999999999999876 667
Q ss_pred EEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccc
Q 002349 670 LLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKS 749 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~ 749 (933)
++||||+++++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 101 ~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~ 175 (302)
T 4e5w_A 101 KLIMEFLPSGSLKEYLPK--NKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKA 175 (302)
T ss_dssp EEEEECCTTCBHHHHHHH--HTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred EEEEEeCCCCcHHHHHHh--ccccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECccccccc
Confidence 999999999999999952 345699999999999999999999976 999999999999999999999999999987
Q ss_pred cccCCCc--eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcc--------cc
Q 002349 750 LCVSKSY--TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTAN--------NA 819 (933)
Q Consensus 750 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~--------~~ 819 (933)
....... ......||..|+|||.+.+..++.++||||+|+++|+|++|+.|+................ ..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (302)
T 4e5w_A 176 IETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNT 255 (302)
T ss_dssp CCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHH
T ss_pred ccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHH
Confidence 6543322 2234568888999999999999999999999999999999999875321110000000000 00
Q ss_pred cccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccC
Q 002349 820 VMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSL 869 (933)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~ 869 (933)
.........+ ...+..+.+++.+||+.||++|||++++++.|+.+
T Consensus 256 ~~~~~~~~~~-----~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 300 (302)
T 4e5w_A 256 LKEGKRLPCP-----PNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEAL 300 (302)
T ss_dssp HHTTCCCCCC-----TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred HhccCCCCCC-----CCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 0000011111 12246789999999999999999999999998764
No 163
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=3.6e-39 Score=354.03 Aligned_cols=265 Identities=25% Similarity=0.332 Sum_probs=206.5
Q ss_pred hhccCcceeeecccceeEEEEEE-cCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEe----cCCccEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVL-KNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSL----SSSGNLL 671 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~----~~~~~~l 671 (933)
.++|+..+.||+|+||.||+|.. .+++.||||++........+.+.+|++++++++||||+++++++. .....++
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 107 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL 107 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence 35899999999999999999997 468899999997766666788999999999999999999999986 3446789
Q ss_pred EEEecCCCCHHHHhcCC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccc
Q 002349 672 FYDFMENGSLWDILHGP-TKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSL 750 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~ 750 (933)
||||+++|+|.+++... .....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~ 184 (317)
T 2buj_A 108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSMNQA 184 (317)
T ss_dssp EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSCEES
T ss_pred EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcchhc
Confidence 99999999999988531 1346799999999999999999999976 9999999999999999999999999998764
Q ss_pred ccCCCc--------eeeeecccccccCccccccCC---CCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccc
Q 002349 751 CVSKSY--------TSTYIMGTIGYIDPEYARTSR---LTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNA 819 (933)
Q Consensus 751 ~~~~~~--------~~~~~~gt~~y~aPE~~~~~~---~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~ 819 (933)
...... ......||+.|+|||++.+.. +++++||||||+++|+|++|+.||.................
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~- 263 (317)
T 2buj_A 185 CIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQ- 263 (317)
T ss_dssp CEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC-
T ss_pred ccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhcc-
Confidence 321100 012235799999999987654 68999999999999999999999963111000000000000
Q ss_pred cccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCCC
Q 002349 820 VMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAPE 874 (933)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~ 874 (933)
.. .+. ....+..+.+++.+||+.||++|||++++++.|+.+.+...
T Consensus 264 ~~---~~~------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~ 309 (317)
T 2buj_A 264 LS---IPQ------SPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAP 309 (317)
T ss_dssp -----CCC------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCC
T ss_pred CC---CCc------cccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCC
Confidence 00 000 01123578899999999999999999999999998865443
No 164
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=5.8e-39 Score=358.44 Aligned_cols=245 Identities=23% Similarity=0.244 Sum_probs=194.4
Q ss_pred hhccCcceeeecccceeEEEEEEcC-CceEEEEEecccC---chhHHHHHHHHHH-HhcCCCCceeeeeeEEecCCccEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY---PQCLKEFETELET-VGSIKHRNLVSLQGYSLSSSGNLL 671 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~-l~~l~h~niv~~~~~~~~~~~~~l 671 (933)
.++|+..+.||+|+||.||+|+++. ++.||+|++.... ....+.+.+|..+ ++.++||||+++++++.+.+..|+
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 3689999999999999999999874 7789999996543 2234456677776 577899999999999999999999
Q ss_pred EEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 672 FYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
||||+++|+|.+++. ..+.+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+++...
T Consensus 117 v~E~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~~~ 190 (373)
T 2r5t_A 117 VLDYINGGELFYHLQ---RERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENI 190 (373)
T ss_dssp EEECCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGGGB
T ss_pred EEeCCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCccccccc
Confidence 999999999999995 346789999999999999999999966 99999999999999999999999999998642
Q ss_pred cCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccc
Q 002349 752 VSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISAT 831 (933)
Q Consensus 752 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (933)
.. .......+||+.|+|||++.+..++.++||||+||++|||++|+.||.+................ +++.
T Consensus 191 ~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~----~~~~---- 261 (373)
T 2r5t_A 191 EH-NSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQ----LKPN---- 261 (373)
T ss_dssp CC-CCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHHHHHHHHSCCC----CCSS----
T ss_pred cC-CCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcccC----CCCC----
Confidence 22 22334568999999999999999999999999999999999999999876544433322221111 1111
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHH
Q 002349 832 CKDLGAVKKVFQLALLCSKRQPTDRPTMHE 861 (933)
Q Consensus 832 ~~~~~~~~~l~~li~~cl~~dP~~RPt~~e 861 (933)
.+..+.+++.+|++.||++||++.+
T Consensus 262 -----~~~~~~~li~~lL~~dp~~R~~~~~ 286 (373)
T 2r5t_A 262 -----ITNSARHLLEGLLQKDRTKRLGAKD 286 (373)
T ss_dssp -----SCHHHHHHHHHHTCSSGGGSTTTTT
T ss_pred -----CCHHHHHHHHHHcccCHHhCCCCCC
Confidence 1356788999999999999999853
No 165
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=1.1e-38 Score=347.89 Aligned_cols=252 Identities=21% Similarity=0.288 Sum_probs=205.4
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 674 (933)
..++|...+.||+|+||.||+|... +++.||+|++........+.+.+|++++++++||||+++++++...+..++|||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 86 (304)
T 2jam_A 7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQ 86 (304)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEE
Confidence 3568999999999999999999976 588999999986654455678999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEe---CCCCCeEEeecccccccc
Q 002349 675 FMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILL---DKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 675 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll---~~~~~~kl~DfGla~~~~ 751 (933)
|+++++|.+++. ..+.+++..+..++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||+++...
T Consensus 87 ~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~ 160 (304)
T 2jam_A 87 LVSGGELFDRIL---ERGVYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ 160 (304)
T ss_dssp CCCSCBHHHHHH---HHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCC
T ss_pred cCCCccHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcceecC
Confidence 999999999984 345789999999999999999999976 99999999999999 788999999999997643
Q ss_pred cCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccc
Q 002349 752 VSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISAT 831 (933)
Q Consensus 752 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (933)
.. ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||........................+
T Consensus 161 ~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~----- 232 (304)
T 2jam_A 161 NG---IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWD----- 232 (304)
T ss_dssp CB---TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHCCCCCCTTTTT-----
T ss_pred CC---ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccc-----
Confidence 22 1223468999999999999999999999999999999999999998655443332222111111111101
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 832 CKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 832 ~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+..+.+++.+|++.||++|||++|++++
T Consensus 233 ----~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 262 (304)
T 2jam_A 233 ----DISESAKDFICHLLEKDPNERYTCEKALSH 262 (304)
T ss_dssp ----TSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred ----cCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 123578899999999999999999999974
No 166
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=1.7e-38 Score=355.19 Aligned_cols=260 Identities=25% Similarity=0.373 Sum_probs=211.2
Q ss_pred CHHHHHHHhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCc--------hhHHHHHHHHHHHhcC-CCCceee
Q 002349 589 VYEDIMRMTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYP--------QCLKEFETELETVGSI-KHRNLVS 658 (933)
Q Consensus 589 ~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l-~h~niv~ 658 (933)
.++......++|+..+.||+|+||.||+|.+. +|+.||||++..... ...+.+.+|+.+++++ +||||++
T Consensus 85 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~ 164 (365)
T 2y7j_A 85 DWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIIT 164 (365)
T ss_dssp HHHHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCC
T ss_pred cchhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeE
Confidence 34555666788999999999999999999986 689999999865431 1245678999999999 7999999
Q ss_pred eeeEEecCCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCC
Q 002349 659 LQGYSLSSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFE 738 (933)
Q Consensus 659 ~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~ 738 (933)
+++++......++||||+++++|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 165 ~~~~~~~~~~~~lv~e~~~g~~L~~~l~---~~~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~ 238 (365)
T 2y7j_A 165 LIDSYESSSFMFLVFDLMRKGELFDYLT---EKVALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQ 238 (365)
T ss_dssp EEEEEEBSSEEEEEECCCTTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCC
T ss_pred EEEEEeeCCEEEEEEEeCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCC
Confidence 9999999999999999999999999995 345799999999999999999999976 9999999999999999999
Q ss_pred eEEeecccccccccCCCceeeeecccccccCcccccc------CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHH
Q 002349 739 AHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYART------SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLIL 812 (933)
Q Consensus 739 ~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~ 812 (933)
+||+|||++..+.... ......||+.|+|||++.+ ..++.++|||||||++|+|++|+.||...........
T Consensus 239 ikl~DfG~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~ 316 (365)
T 2y7j_A 239 IRLSDFGFSCHLEPGE--KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRM 316 (365)
T ss_dssp EEECCCTTCEECCTTC--CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH
T ss_pred EEEEecCcccccCCCc--ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHHHH
Confidence 9999999998764322 2334679999999998864 3588999999999999999999999986554443332
Q ss_pred hhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 813 SKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
.......... +... ..+..+.+++.+|++.||++|||++|++++
T Consensus 317 i~~~~~~~~~---~~~~------~~~~~~~~li~~~L~~dP~~Rps~~ell~h 360 (365)
T 2y7j_A 317 IMEGQYQFSS---PEWD------DRSSTVKDLISRLLQVDPEARLTAEQALQH 360 (365)
T ss_dssp HHHTCCCCCH---HHHS------SSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HHhCCCCCCC---cccc------cCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 2211111100 0000 113568899999999999999999999975
No 167
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=1.1e-38 Score=344.48 Aligned_cols=253 Identities=21% Similarity=0.265 Sum_probs=200.9
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 674 (933)
.++|...+.||+|+||+||+|..+ +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 100 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVME 100 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEE
Confidence 368999999999999999999975 47899999987643 3356789999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcCC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEe---CCCCCeEEeeccccccc
Q 002349 675 FMENGSLWDILHGP-TKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILL---DKDFEAHLTDFGIAKSL 750 (933)
Q Consensus 675 ~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll---~~~~~~kl~DfGla~~~ 750 (933)
|+++|+|.+.+... .....+++..+..++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||+++..
T Consensus 101 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~ 177 (285)
T 3is5_A 101 TCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELF 177 (285)
T ss_dssp CCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-
T ss_pred eCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeecceec
Confidence 99999999988421 1236799999999999999999999966 99999999999999 45688999999999865
Q ss_pred ccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccc
Q 002349 751 CVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISA 830 (933)
Q Consensus 751 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (933)
... .......||+.|+|||++. ..++.++||||+|+++|||++|+.||.+.................... ..
T Consensus 178 ~~~--~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~----~~- 249 (285)
T 3is5_A 178 KSD--EHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVE----CR- 249 (285)
T ss_dssp -----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCC------C-
T ss_pred CCc--ccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhccCCcccccc----cC-
Confidence 332 2234457999999999886 468999999999999999999999998654433322222111111100 00
Q ss_pred cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 831 TCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 831 ~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+..+.+++.+|++.||++|||++|++++
T Consensus 250 -----~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 279 (285)
T 3is5_A 250 -----PLTPQAVDLLKQMLTKDPERRPSAAQVLHH 279 (285)
T ss_dssp -----CCCHHHHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred -----cCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 013568899999999999999999999864
No 168
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-39 Score=357.40 Aligned_cols=252 Identities=24% Similarity=0.324 Sum_probs=198.5
Q ss_pred hccCcceeeecccceeEEEEEEcCCceEEEEEecccC--chhHHHHHHHHHHHhcCCC--CceeeeeeEEecCCccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHY--PQCLKEFETELETVGSIKH--RNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h--~niv~~~~~~~~~~~~~lv~ 673 (933)
++|+..+.||+|+||.||+|...+++.||||++.... ....+.+.+|++++++++| |||+++++++..+...++||
T Consensus 9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 88 (343)
T 3dbq_A 9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 88 (343)
T ss_dssp CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEE
Confidence 5789999999999999999999889999999986543 3345778999999999976 99999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
| +.+++|.+++. ....+++.++..++.|++.||+|||++ +|+||||||+|||++ ++.+||+|||+++.....
T Consensus 89 e-~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~ 160 (343)
T 3dbq_A 89 E-CGNIDLNSWLK---KKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 160 (343)
T ss_dssp C-CCSEEHHHHHH---HSCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC---
T ss_pred e-CCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeecccccccCcc
Confidence 9 45789999995 356799999999999999999999976 999999999999997 578999999999876433
Q ss_pred CCc-eeeeecccccccCcccccc-----------CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccc
Q 002349 754 KSY-TSTYIMGTIGYIDPEYART-----------SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVM 821 (933)
Q Consensus 754 ~~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 821 (933)
... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||..................
T Consensus 161 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~-- 238 (343)
T 3dbq_A 161 TTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNH-- 238 (343)
T ss_dssp ---------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTS--
T ss_pred cccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCc--
Confidence 222 2334679999999999865 67899999999999999999999999864433222221111110
Q ss_pred cccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHc
Q 002349 822 ETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLG 867 (933)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~ 867 (933)
....+.. .+..+.+++.+||+.||++|||++|++++..
T Consensus 239 ---~~~~~~~-----~~~~l~~li~~~L~~dp~~Rpt~~e~l~hp~ 276 (343)
T 3dbq_A 239 ---EIEFPDI-----PEKDLQDVLKCCLKRDPKQRISIPELLAHPY 276 (343)
T ss_dssp ---CCCCCCC-----SCHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred ---ccCCccc-----CCHHHHHHHHHHcCCChhHCCCHHHHHhCcc
Confidence 1111111 1246889999999999999999999997543
No 169
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=2.2e-38 Score=344.52 Aligned_cols=257 Identities=23% Similarity=0.368 Sum_probs=203.2
Q ss_pred hccCcceeeecccceeEEEEEEcC----CceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEe-cCCccEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKN----CKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSL-SSSGNLL 671 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~-~~~~~~l 671 (933)
.+|+..+.||+|+||.||+|.+.+ ...||+|.+.... ....+.+.+|++++++++||||+++++++. .++..++
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 104 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 104 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence 467888999999999999999653 2358999987643 345577899999999999999999999864 4567899
Q ss_pred EEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 672 FYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
||||+++|+|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 105 v~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~ 179 (298)
T 3f66_A 105 VLPYMKHGDLRNFIRN--ETHNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMY 179 (298)
T ss_dssp EEECCTTCBHHHHHHC--TTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGGCCCS
T ss_pred EEeCCCCCCHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECccccccccc
Confidence 9999999999999963 456789999999999999999999966 99999999999999999999999999998664
Q ss_pred cCCC---ceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCcc
Q 002349 752 VSKS---YTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPE 827 (933)
Q Consensus 752 ~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (933)
.... .......||+.|+|||.+.+..++.++||||+|+++|+|++ |..||................. ..
T Consensus 180 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 252 (298)
T 3f66_A 180 DKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRR-------LL 252 (298)
T ss_dssp CGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHHHHTTCC-------CC
T ss_pred ccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhcCCC-------CC
Confidence 3221 12333567889999999999999999999999999999999 5555654433332222111111 00
Q ss_pred ccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 828 ISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 828 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
.+. ..+..+.+++.+|++.||++|||++|+++.|+.+..
T Consensus 253 ~~~-----~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~ 291 (298)
T 3f66_A 253 QPE-----YCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFS 291 (298)
T ss_dssp CCT-----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCc-----cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 011 123578899999999999999999999999987654
No 170
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=3.1e-38 Score=347.92 Aligned_cols=260 Identities=20% Similarity=0.287 Sum_probs=208.8
Q ss_pred HHHHHhhccCcc-eeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcC-CCCceeeeeeEEecC
Q 002349 592 DIMRMTENLSEK-YIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSI-KHRNLVSLQGYSLSS 666 (933)
Q Consensus 592 ~~~~~~~~~~~~-~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~ 666 (933)
......++|... +.||+|+||.||+|... +++.||+|++.... ......+.+|+.+++++ +||||+++++++...
T Consensus 22 ~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~ 101 (327)
T 3lm5_A 22 SMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENT 101 (327)
T ss_dssp CHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECS
T ss_pred HHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeC
Confidence 344556678877 88999999999999976 47899999987543 33467889999999999 569999999999999
Q ss_pred CccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCC---CCCeEEee
Q 002349 667 SGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDK---DFEAHLTD 743 (933)
Q Consensus 667 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~---~~~~kl~D 743 (933)
+..++||||+++|+|.+++.. .....+++..+..++.|++.||+|||++ +|+||||||+||+++. ++.+||+|
T Consensus 102 ~~~~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~~~~kL~D 177 (327)
T 3lm5_A 102 SEIILILEYAAGGEIFSLCLP-ELAEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPLGDIKIVD 177 (327)
T ss_dssp SEEEEEEECCTTEEGGGGGSS-CC-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTBCCEEECC
T ss_pred CeEEEEEEecCCCcHHHHHHH-hcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCCCcEEEee
Confidence 999999999999999999853 2346799999999999999999999976 9999999999999998 78999999
Q ss_pred cccccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccc
Q 002349 744 FGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMET 823 (933)
Q Consensus 744 fGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 823 (933)
||+++..... .......||+.|+|||++.+..++.++||||+|+++|+|++|+.||......................
T Consensus 178 fg~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~ 255 (327)
T 3lm5_A 178 FGMSRKIGHA--CELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEE 255 (327)
T ss_dssp GGGCEEC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTT
T ss_pred CccccccCCc--cccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhcccccCch
Confidence 9999876432 22334579999999999999999999999999999999999999998765554443332222111111
Q ss_pred cCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 824 VDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 824 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
... ..+..+.+++.+|++.||++|||+++++++-
T Consensus 256 ~~~---------~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h~ 289 (327)
T 3lm5_A 256 TFS---------SVSQLATDFIQSLLVKNPEKRPTAEICLSHS 289 (327)
T ss_dssp TTT---------TSCHHHHHHHHHHSCSSGGGSCCHHHHTTCG
T ss_pred hhc---------ccCHHHHHHHHHHcCCChhhCcCHHHHhCCH
Confidence 111 1235688999999999999999999998754
No 171
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.1e-38 Score=357.02 Aligned_cols=256 Identities=23% Similarity=0.365 Sum_probs=196.0
Q ss_pred ccCcceeeecccceeEEEEEEcC--C--ceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEec-CCccEEE
Q 002349 599 NLSEKYIIGYGASSTVYKCVLKN--C--KPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLS-SSGNLLF 672 (933)
Q Consensus 599 ~~~~~~~lG~G~~g~Vy~~~~~~--~--~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-~~~~~lv 672 (933)
.|...+.||+|+||+||+|.+.+ + ..||||.+.... ....+++.+|+.++++++||||+++++++.. ++..++|
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv 169 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV 169 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence 46677899999999999999642 2 358999986543 4456789999999999999999999998754 4578999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
|||+++|+|.++++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 170 ~e~~~~g~L~~~l~~--~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~ 244 (373)
T 3c1x_A 170 LPYMKHGDLRNFIRN--ETHNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYD 244 (373)
T ss_dssp EECCTTCBHHHHHHC--TTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred EECCCCCCHHHHHhh--cccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeeccccccccc
Confidence 999999999999963 445689999999999999999999966 999999999999999999999999999986533
Q ss_pred CCCc---eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCccc
Q 002349 753 SKSY---TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEI 828 (933)
Q Consensus 753 ~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (933)
.... ......+|+.|+|||.+.+..++.++|||||||++|||++ |..||.+............... ...
T Consensus 245 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~~~~~-------~~~ 317 (373)
T 3c1x_A 245 KEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRR-------LLQ 317 (373)
T ss_dssp -------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHTTCC-------CCC
T ss_pred cccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHcCCC-------CCC
Confidence 2211 1233467889999999999999999999999999999999 6777765443332222111110 001
Q ss_pred cccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 829 SATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 829 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
+. ..+..+.+++.+||+.||++|||++|+++.|+.+..
T Consensus 318 p~-----~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~ 355 (373)
T 3c1x_A 318 PE-----YCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFS 355 (373)
T ss_dssp CT-----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CC-----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 11 124578899999999999999999999999987654
No 172
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=6.1e-39 Score=353.93 Aligned_cols=264 Identities=20% Similarity=0.253 Sum_probs=198.6
Q ss_pred HHhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCc--hhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEE
Q 002349 595 RMTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYP--QCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLL 671 (933)
Q Consensus 595 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 671 (933)
...++|+..+.||+|+||+||+|++. +++.||||++..... ...+.+.+|++++++++||||+++++++..++..++
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 110 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL 110 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence 34578999999999999999999965 578999999975432 234567899999999999999999999999999999
Q ss_pred EEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEe-----CCCCCeEEeeccc
Q 002349 672 FYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILL-----DKDFEAHLTDFGI 746 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll-----~~~~~~kl~DfGl 746 (933)
||||+++ +|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||++ +..+.+||+|||+
T Consensus 111 v~e~~~~-~L~~~~~---~~~~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~ 183 (329)
T 3gbz_A 111 IFEYAEN-DLKKYMD---KNPDVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDFGL 183 (329)
T ss_dssp EEECCSE-EHHHHHH---HCTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECCTTH
T ss_pred EEecCCC-CHHHHHh---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECcCCC
Confidence 9999985 9999985 345699999999999999999999976 99999999999999 4555699999999
Q ss_pred ccccccCCCceeeeecccccccCccccccC-CCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccC
Q 002349 747 AKSLCVSKSYTSTYIMGTIGYIDPEYARTS-RLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVD 825 (933)
Q Consensus 747 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (933)
++...... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||.+......................
T Consensus 184 a~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 262 (329)
T 3gbz_A 184 ARAFGIPI-RQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTW 262 (329)
T ss_dssp HHHHC------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTS
T ss_pred ccccCCcc-cccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhh
Confidence 98764322 223345789999999999875 5899999999999999999999999877665554433221111111000
Q ss_pred ccc----------cccc-cCH------HHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 826 PEI----------SATC-KDL------GAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 826 ~~~----------~~~~-~~~------~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
+.. +... ... .....+.+++.+|++.||++|||++|++++-
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp 320 (329)
T 3gbz_A 263 PGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEHP 320 (329)
T ss_dssp TTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSG
T ss_pred hhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhCCc
Confidence 000 0000 000 1236788999999999999999999999743
No 173
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4e-38 Score=361.81 Aligned_cols=333 Identities=19% Similarity=0.205 Sum_probs=287.1
Q ss_pred CcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhh
Q 002349 68 FTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLIL 147 (933)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 147 (933)
..+..|+|++|.+++. + ++.+++|++|+|++|++++ +| ++++++|++|+|++|++++ +| ++.+++|++|+|
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 3678899999999984 3 8999999999999999997 44 9999999999999999996 55 899999999999
Q ss_pred cccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCc
Q 002349 148 KNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGE 227 (933)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 227 (933)
++|++++. + ++++++|++|++++|+..+.+ .+..+++|++|++++|++++ +| ++.+++|+.|++++|++++.
T Consensus 135 ~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 135 ARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp TTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee
Confidence 99999974 3 899999999999999776666 58899999999999999997 55 89999999999999999975
Q ss_pred CCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCC
Q 002349 228 IPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMT 307 (933)
Q Consensus 228 ~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 307 (933)
+ .....+|++|++++|++++ +| ++.+++|+.|++++|++++.. ++.+++|+.|++++|
T Consensus 207 -~-l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n-------------- 264 (457)
T 3bz5_A 207 -D-LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT-------------- 264 (457)
T ss_dssp -C-CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------
T ss_pred -c-cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------
Confidence 2 3344589999999999998 55 889999999999999999864 456788999998776
Q ss_pred cceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCC
Q 002349 308 KLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLS 387 (933)
Q Consensus 308 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~ 387 (933)
+|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. ...+|+.|++++| ++|++|+++
T Consensus 265 ~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~ 326 (457)
T 3bz5_A 265 DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLN 326 (457)
T ss_dssp CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECT
T ss_pred CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECC
Confidence 46678899999888777 57889999999999998877774 4466777776665 689999999
Q ss_pred cccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCcccccc
Q 002349 388 LNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVI 467 (933)
Q Consensus 388 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 467 (933)
+|++++. .+..+++|+.|++++|+|++ ++.|..|++++|.++|. +++..|+.+++++|+++|.+
T Consensus 327 ~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~i 390 (457)
T 3bz5_A 327 NTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAV 390 (457)
T ss_dssp TCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEEC
T ss_pred CCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEc
Confidence 9999984 38899999999999999985 35788899999999986 46778999999999999999
Q ss_pred chhhcc
Q 002349 468 PEELSQ 473 (933)
Q Consensus 468 p~~~~~ 473 (933)
|..+..
T Consensus 391 p~~~~~ 396 (457)
T 3bz5_A 391 SPDLLD 396 (457)
T ss_dssp CTTCBC
T ss_pred ChhHhc
Confidence 976543
No 174
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=9.7e-39 Score=354.31 Aligned_cols=249 Identities=28% Similarity=0.352 Sum_probs=204.0
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 672 (933)
.+.|+..+.||+|+||+||+|... +++.||||++.... ....+++.+|++++++++||||+++++++..++..++|
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 132 (348)
T 1u5q_A 53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV 132 (348)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence 356889999999999999999964 68899999996543 23346789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
|||++ |++.+.+. .....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 133 ~e~~~-g~l~~~l~--~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~ 206 (348)
T 1u5q_A 133 MEYCL-GSASDLLE--VHKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP 206 (348)
T ss_dssp EECCS-EEHHHHHH--HHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS
T ss_pred EecCC-CCHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceecCC
Confidence 99997 58888875 2346799999999999999999999976 999999999999999999999999999986532
Q ss_pred CCCceeeeecccccccCccccc---cCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccc
Q 002349 753 SKSYTSTYIMGTIGYIDPEYAR---TSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEIS 829 (933)
Q Consensus 753 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (933)
. ....||+.|+|||++. +..++.++|||||||++|||++|+.||.+.............. . +...
T Consensus 207 ~-----~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~--~-----~~~~ 274 (348)
T 1u5q_A 207 A-----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNE--S-----PALQ 274 (348)
T ss_dssp B-----CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSC--C-----CCCC
T ss_pred C-----CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcC--C-----CCCC
Confidence 2 2357999999999984 5678999999999999999999999998665444332221111 0 1111
Q ss_pred ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHc
Q 002349 830 ATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLG 867 (933)
Q Consensus 830 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~ 867 (933)
....+..+.+++.+||+.||++|||+++++++..
T Consensus 275 ----~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h~~ 308 (348)
T 1u5q_A 275 ----SGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRF 308 (348)
T ss_dssp ----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHH
T ss_pred ----CCCCCHHHHHHHHHHcccChhhCcCHHHHhhChh
Confidence 0112356889999999999999999999987543
No 175
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=9.2e-39 Score=371.46 Aligned_cols=252 Identities=23% Similarity=0.280 Sum_probs=206.0
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 672 (933)
.++|+..+.||+|+||.||+|+++ +++.||+|++.... ......+.+|++++++++|||||++++++.+.+..++|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 357888999999999999999986 58899999996532 23456688999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
|||++||+|.+++.. .....+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+|+....
T Consensus 263 mEy~~gg~L~~~l~~-~~~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~ 338 (576)
T 2acx_A 263 LTLMNGGDLKFHIYH-MGQAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPE 338 (576)
T ss_dssp ECCCCSCBHHHHHHS-SSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EEcCCCCcHHHHHHh-cCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccceeccc
Confidence 999999999999964 2234599999999999999999999976 999999999999999999999999999987643
Q ss_pred CCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchh--HHHHhhhcccccccccCccccc
Q 002349 753 SKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLH--HLILSKTANNAVMETVDPEISA 830 (933)
Q Consensus 753 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 830 (933)
.. .....+||+.|+|||++.+..++.++||||+||++|||++|+.||....... ......... ....++.
T Consensus 339 ~~--~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~------~~~~~p~ 410 (576)
T 2acx_A 339 GQ--TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKE------VPEEYSE 410 (576)
T ss_dssp TC--CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHH------CCCCCCT
T ss_pred Cc--cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhc------ccccCCc
Confidence 32 2334589999999999999999999999999999999999999998643211 111111110 0111111
Q ss_pred cccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 002349 831 TCKDLGAVKKVFQLALLCSKRQPTDRP-----TMHEVSRV 865 (933)
Q Consensus 831 ~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~evl~~ 865 (933)
..+..+.+++.+|++.||++|| +++|++++
T Consensus 411 -----~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~H 445 (576)
T 2acx_A 411 -----RFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEH 445 (576)
T ss_dssp -----TSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTS
T ss_pred -----cCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhC
Confidence 1235788899999999999999 78998864
No 176
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=5.6e-39 Score=353.15 Aligned_cols=247 Identities=21% Similarity=0.284 Sum_probs=179.7
Q ss_pred ceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCC-CCceeeeeeEEecCCccEEEEEecCCCC
Q 002349 603 KYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIK-HRNLVSLQGYSLSSSGNLLFYDFMENGS 680 (933)
Q Consensus 603 ~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~~gs 680 (933)
.+.||+|+||+||+|.++ +++.||||++... ....+.+|+++++++. ||||+++++++.++...++||||+++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 378999999999999986 4789999998653 3467789999999997 9999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCC---CeEEeecccccccccCCCce
Q 002349 681 LWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDF---EAHLTDFGIAKSLCVSKSYT 757 (933)
Q Consensus 681 L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~---~~kl~DfGla~~~~~~~~~~ 757 (933)
|.+++. ....+++.++..++.|++.||+|||++ +|+||||||+||+++.++ .+||+|||+++..... ...
T Consensus 93 L~~~l~---~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~-~~~ 165 (325)
T 3kn6_A 93 LFERIK---KKKHFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPD-NQP 165 (325)
T ss_dssp HHHHHH---HCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-----
T ss_pred HHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccccceecCCC-CCc
Confidence 999995 356799999999999999999999966 999999999999998765 8999999999865432 222
Q ss_pred eeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchh-----HHHHhhhcccccccccCccccccc
Q 002349 758 STYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLH-----HLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 758 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
.....||+.|+|||++.+..++.++||||+||++|+|++|+.||....... .........+... ......
T Consensus 166 ~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~--- 240 (325)
T 3kn6_A 166 LKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFS--FEGEAW--- 240 (325)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCC--CCSHHH---
T ss_pred ccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCC--CCcccc---
Confidence 344578999999999999999999999999999999999999997543210 0111111111110 000000
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
...+..+.+++.+|++.||++|||++|++++-
T Consensus 241 --~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h~ 272 (325)
T 3kn6_A 241 --KNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNE 272 (325)
T ss_dssp --HTSCHHHHHHHHHHHCCCTTTCCCTTTSTTCG
T ss_pred --cCCCHHHHHHHHHHCCCChhHCCCHHHHhcCh
Confidence 01246788999999999999999999998653
No 177
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.2e-38 Score=353.02 Aligned_cols=270 Identities=24% Similarity=0.365 Sum_probs=204.9
Q ss_pred HHHHHHhhccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcC--CCCceeeeeeEEecC--
Q 002349 591 EDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSI--KHRNLVSLQGYSLSS-- 666 (933)
Q Consensus 591 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~~~~~~~~~-- 666 (933)
..-....++|+..+.||+|+||.||+|.+. ++.||||++.... ...+.+|.+++... +||||+++++++...
T Consensus 30 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~ 105 (337)
T 3mdy_A 30 LVQRTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE---EASWFRETEIYQTVLMRHENILGFIAADIKGTG 105 (337)
T ss_dssp HHHTTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCG
T ss_pred ccccccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccc---cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCC
Confidence 334455689999999999999999999986 7899999986432 34445556665554 899999999999877
Q ss_pred --CccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCCeeeccCCCCceEeCCCCCe
Q 002349 667 --SGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDC-----SPRIIHRDVKSSNILLDKDFEA 739 (933)
Q Consensus 667 --~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~Dikp~NIll~~~~~~ 739 (933)
...++||||+++|+|.++++ ...+++..+..++.|++.||+|||+++ ..+|+||||||+||+++.++.+
T Consensus 106 ~~~~~~lv~e~~~~g~L~~~l~----~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~ 181 (337)
T 3mdy_A 106 SWTQLYLITDYHENGSLYDYLK----STTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTC 181 (337)
T ss_dssp GGCEEEEEECCCTTCBHHHHHH----HCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCE
T ss_pred CCCceEEEEeccCCCcHHHHhh----ccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCE
Confidence 67899999999999999995 246899999999999999999999431 1289999999999999999999
Q ss_pred EEeecccccccccCCCce---eeeecccccccCccccccCCCCcc------hhhHHHHHHHHHHHhC----------CCC
Q 002349 740 HLTDFGIAKSLCVSKSYT---STYIMGTIGYIDPEYARTSRLTEK------SDVYSFGIVLLELLTG----------RKA 800 (933)
Q Consensus 740 kl~DfGla~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~------~DvwSlGv~l~elltg----------~~p 800 (933)
||+|||+++......... .....||+.|+|||++.+...+.+ +|||||||++|||++| +.|
T Consensus 182 kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p 261 (337)
T 3mdy_A 182 CIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLP 261 (337)
T ss_dssp EECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCT
T ss_pred EEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCccccccccccc
Confidence 999999997664322221 124579999999999988766654 9999999999999999 666
Q ss_pred CCCCcchh---HHHHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCC
Q 002349 801 VDNECNLH---HLILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPA 872 (933)
Q Consensus 801 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 872 (933)
|....... ....... ......+..+.......++..+.+++.+||+.||++|||++||+++|+.+...
T Consensus 262 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~ 332 (337)
T 3mdy_A 262 YHDLVPSDPSYEDMREIV----CIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSES 332 (337)
T ss_dssp TTTTSCSSCCHHHHHHHH----TTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HhhhcCCCCchhhhHHHH----hhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhh
Confidence 65321111 1111111 11112222222222335678899999999999999999999999999876543
No 178
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=8.5e-39 Score=350.91 Aligned_cols=268 Identities=23% Similarity=0.323 Sum_probs=214.2
Q ss_pred CHHHHHHHhhccCcceeeecccceeEEEEEEc------CCceEEEEEecccC-chhHHHHHHHHHHHhcC-CCCceeeee
Q 002349 589 VYEDIMRMTENLSEKYIIGYGASSTVYKCVLK------NCKPVAIKRLYSHY-PQCLKEFETELETVGSI-KHRNLVSLQ 660 (933)
Q Consensus 589 ~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~~~ 660 (933)
....+....++|...+.||+|+||+||+|.+. +++.||||++.... ....+.+.+|+++++++ +||||++++
T Consensus 18 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~ 97 (316)
T 2xir_A 18 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 97 (316)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred cccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEE
Confidence 34445555689999999999999999999852 35789999997654 33456789999999999 799999999
Q ss_pred eEEecCC-ccEEEEEecCCCCHHHHhcCCCC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccC
Q 002349 661 GYSLSSS-GNLLFYDFMENGSLWDILHGPTK-------------KKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDV 726 (933)
Q Consensus 661 ~~~~~~~-~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Di 726 (933)
+++...+ ..++||||+++|+|.+++..... ...+++..+..++.|++.||+|||++ +|+||||
T Consensus 98 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~di 174 (316)
T 2xir_A 98 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDL 174 (316)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCCSCC
T ss_pred EEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---CcccccC
Confidence 9987755 48999999999999999964221 12389999999999999999999966 9999999
Q ss_pred CCCceEeCCCCCeEEeecccccccccCCC-ceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCC
Q 002349 727 KSSNILLDKDFEAHLTDFGIAKSLCVSKS-YTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNE 804 (933)
Q Consensus 727 kp~NIll~~~~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~ 804 (933)
||+||+++.++.+||+|||+++....... .......||+.|+|||++.+..++.++||||+|+++|+|++ |+.||.+.
T Consensus 175 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~ 254 (316)
T 2xir_A 175 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV 254 (316)
T ss_dssp SGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred ccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCccc
Confidence 99999999999999999999987643332 22334568899999999999999999999999999999998 99999765
Q ss_pred cchhHHHHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 805 CNLHHLILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
............... ...+. ..+..+.+++.+||+.||++|||++|++++|+.+.
T Consensus 255 ~~~~~~~~~~~~~~~------~~~~~-----~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 309 (316)
T 2xir_A 255 KIDEEFCRRLKEGTR------MRAPD-----YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 309 (316)
T ss_dssp CCSHHHHHHHHHTCC------CCCCT-----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred chhHHHHHHhccCcc------CCCCC-----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 433332222111110 11111 12357889999999999999999999999998764
No 179
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=2.4e-38 Score=343.51 Aligned_cols=248 Identities=22% Similarity=0.347 Sum_probs=207.5
Q ss_pred hccCcceeeecccceeEEEEEEcC-CceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
++|...+.||+|+||.||+|.+.. ++.||+|++.... ....+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 94 (294)
T 2rku_A 15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL 94 (294)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEE
Confidence 578899999999999999999874 6789999986542 334567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
||+++++|.+++. ....+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 95 e~~~~~~L~~~~~---~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 168 (294)
T 2rku_A 95 ELCRRRSLLELHK---RRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 168 (294)
T ss_dssp ECCTTCBHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred ecCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceecccC
Confidence 9999999999984 346799999999999999999999976 9999999999999999999999999999876422
Q ss_pred CCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCK 833 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (933)
. .......||+.|+|||.+.+..++.++||||+|+++|+|++|+.||.................. ++.
T Consensus 169 ~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~--------~~~--- 236 (294)
T 2rku_A 169 G-ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYS--------IPK--- 236 (294)
T ss_dssp T-CCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCC--------CCT---
T ss_pred c-cccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhhccCC--------Ccc---
Confidence 2 2233457999999999999999999999999999999999999999876544433322211111 111
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 834 DLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 834 ~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+..+.+++.+|++.||++|||++|++++
T Consensus 237 --~~~~~~~~li~~~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 237 --HINPVAASLIQKMLQTDPTARPTINELLND 266 (294)
T ss_dssp --TSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred --ccCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 113568889999999999999999999974
No 180
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=1.3e-38 Score=348.46 Aligned_cols=264 Identities=19% Similarity=0.286 Sum_probs=200.7
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 672 (933)
.++|+..+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++...+..++|
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 110 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 110 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence 357999999999999999999974 68899999997532 34556789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhcCC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 673 YDFMENGSLWDILHGP-TKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
|||+++++|.+++... .....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~ 187 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFS 187 (310)
T ss_dssp EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC-------
T ss_pred EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEeccceeeec
Confidence 9999999999998521 1345689999999999999999999976 99999999999999999999999999998654
Q ss_pred cCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccc
Q 002349 752 VSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISAT 831 (933)
Q Consensus 752 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (933)
... .......|++.|+|||.+.+..++.++||||||+++|+|++|+.||.+................... ..
T Consensus 188 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~-----~~-- 259 (310)
T 2wqm_A 188 SKT-TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPP-----LP-- 259 (310)
T ss_dssp ------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTCSCC-----CC--
T ss_pred CCC-ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhcccCCC-----Cc--
Confidence 322 2223457899999999999999999999999999999999999999754322111111111111111 10
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCC
Q 002349 832 CKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAP 873 (933)
Q Consensus 832 ~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 873 (933)
....+..+.+++.+||+.||++|||+++|++.|+.+.+..
T Consensus 260 --~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~ 299 (310)
T 2wqm_A 260 --SDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACT 299 (310)
T ss_dssp --TTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred --ccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhh
Confidence 0112357889999999999999999999999998876544
No 181
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=1e-38 Score=359.94 Aligned_cols=251 Identities=24% Similarity=0.325 Sum_probs=198.8
Q ss_pred hccCcceeeecccceeEEEEEEcCCceEEEEEecccC--chhHHHHHHHHHHHhcCC--CCceeeeeeEEecCCccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHY--PQCLKEFETELETVGSIK--HRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~--h~niv~~~~~~~~~~~~~lv~ 673 (933)
++|+..+.||+|+||+||+|....++.||||++.... ....+.+.+|++++++++ ||||+++++++...+..++||
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 4699999999999999999998888999999986543 345677899999999996 599999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
| +.+++|.+++. ....+++.++..++.|++.||+|||++ +|+||||||+|||++ ++.+||+|||+++.+...
T Consensus 136 E-~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~ 207 (390)
T 2zmd_A 136 E-CGNIDLNSWLK---KKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 207 (390)
T ss_dssp E-CCSEEHHHHHH---HCSSCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSCCC---
T ss_pred e-cCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCccccccCC
Confidence 9 56889999995 345789999999999999999999965 999999999999996 589999999999876433
Q ss_pred CCc-eeeeecccccccCcccccc-----------CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccc
Q 002349 754 KSY-TSTYIMGTIGYIDPEYART-----------SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVM 821 (933)
Q Consensus 754 ~~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 821 (933)
... .....+||+.|+|||++.+ ..++.++|||||||++|||++|+.||................. .
T Consensus 208 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~-~- 285 (390)
T 2zmd_A 208 TTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPN-H- 285 (390)
T ss_dssp ------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTT-S-
T ss_pred CccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCcc-c-
Confidence 221 2334579999999999865 3689999999999999999999999986543322221111111 0
Q ss_pred cccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 822 ETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
....+.. .+..+.+++.+||+.||++|||++|++++-
T Consensus 286 ---~~~~~~~-----~~~~~~~li~~~L~~dP~~Rps~~ell~hp 322 (390)
T 2zmd_A 286 ---EIEFPDI-----PEKDLQDVLKCCLKRDPKQRISIPELLAHP 322 (390)
T ss_dssp ---CCCCCCC-----SCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred ---cCCCCcc-----chHHHHHHHHHHcccChhhCCCHHHHhhCc
Confidence 0111111 135688999999999999999999999754
No 182
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.6e-38 Score=345.53 Aligned_cols=258 Identities=24% Similarity=0.360 Sum_probs=205.4
Q ss_pred ccCcceeeecccceeEEEEEEcC-C---ceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCcc-EEE
Q 002349 599 NLSEKYIIGYGASSTVYKCVLKN-C---KPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGN-LLF 672 (933)
Q Consensus 599 ~~~~~~~lG~G~~g~Vy~~~~~~-~---~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~-~lv 672 (933)
.|...+.||+|+||+||+|.+.+ + ..||+|++.... ....+.+.+|++++++++||||+++++++...+.. ++|
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 45566899999999999998643 2 369999997644 34567889999999999999999999999876665 999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
|||+.+|+|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 102 ~e~~~~~~L~~~~~~--~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~ 176 (298)
T 3pls_A 102 LPYMCHGDLLQFIRS--PQRNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDILD 176 (298)
T ss_dssp ECCCTTCBHHHHHHC--TTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTTTT
T ss_pred EecccCCCHHHHHhc--cccCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCcccccC
Confidence 999999999999963 456789999999999999999999976 999999999999999999999999999986533
Q ss_pred CCC---ceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccc
Q 002349 753 SKS---YTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEIS 829 (933)
Q Consensus 753 ~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (933)
... .......+|+.|+|||.+.+..++.++||||+|+++|+|++|..|+................... ..+
T Consensus 177 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~ 250 (298)
T 3pls_A 177 REYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRL------PQP 250 (298)
T ss_dssp GGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTTCCC------CCC
T ss_pred CcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcCCCC------CCC
Confidence 221 12233568899999999999999999999999999999999666654333333322221111110 011
Q ss_pred ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCC
Q 002349 830 ATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPA 872 (933)
Q Consensus 830 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 872 (933)
. ..+..+.+++.+|++.||.+|||++++++.|+.+...
T Consensus 251 ~-----~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~ 288 (298)
T 3pls_A 251 E-----YCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSA 288 (298)
T ss_dssp T-----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred c-----cchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 1 1235788999999999999999999999999876543
No 183
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=2.6e-38 Score=357.62 Aligned_cols=250 Identities=22% Similarity=0.267 Sum_probs=191.1
Q ss_pred hccCcc-eeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhc-CCCCceeeeeeEEec----CCccE
Q 002349 598 ENLSEK-YIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGS-IKHRNLVSLQGYSLS----SSGNL 670 (933)
Q Consensus 598 ~~~~~~-~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~----~~~~~ 670 (933)
++|... +.||+|+||+||+|.++ +++.||||++... ..+.+|++++.+ .+||||+++++++.. ....+
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~ 135 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 135 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence 466665 68999999999999976 4788999998632 456788888744 589999999998865 55689
Q ss_pred EEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCC---CCCeEEeecccc
Q 002349 671 LFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDK---DFEAHLTDFGIA 747 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~---~~~~kl~DfGla 747 (933)
+||||+++|+|.+++.. .....+++.++..++.|++.||+|||++ +|+||||||+|||++. ++.+||+|||++
T Consensus 136 lv~E~~~gg~L~~~l~~-~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a 211 (400)
T 1nxk_A 136 IVMECLDGGELFSRIQD-RGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFA 211 (400)
T ss_dssp EEEECCCSEEHHHHHHC-C---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCCTTC
T ss_pred EEEEeCCCCcHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEecccc
Confidence 99999999999999964 2234699999999999999999999966 9999999999999997 789999999999
Q ss_pred cccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchh----HHHHhhhcccccccc
Q 002349 748 KSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLH----HLILSKTANNAVMET 823 (933)
Q Consensus 748 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~----~~~~~~~~~~~~~~~ 823 (933)
+..... ......+||+.|+|||++.+..++.++|||||||++|||++|+.||.+..... ..............
T Consensus 212 ~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~- 288 (400)
T 1nxk_A 212 KETTSH--NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPN- 288 (400)
T ss_dssp EECC-------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCT-
T ss_pred cccCCC--CccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCCC-
Confidence 865322 22345678999999999999999999999999999999999999997543221 11111111111100
Q ss_pred cCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHc
Q 002349 824 VDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLG 867 (933)
Q Consensus 824 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~ 867 (933)
+.. ...+..+.+++.+||+.||++|||++|++++-.
T Consensus 289 --~~~------~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~ 324 (400)
T 1nxk_A 289 --PEW------SEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPW 324 (400)
T ss_dssp --TTT------TTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHH
T ss_pred --ccc------ccCCHHHHHHHHHHCCCChhHCcCHHHHhcCcc
Confidence 000 112357889999999999999999999998643
No 184
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=3.3e-38 Score=340.55 Aligned_cols=245 Identities=22% Similarity=0.318 Sum_probs=205.1
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
++|+..+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 93 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML 93 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence 67999999999999999999976 46789999986532 223567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
||+++++|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++......
T Consensus 94 e~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~ 167 (284)
T 2vgo_A 94 EFAPRGELYKELQ---KHGRFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL 167 (284)
T ss_dssp CCCTTEEHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCEECSSS
T ss_pred EeCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccccCccc
Confidence 9999999999995 345789999999999999999999965 9999999999999999999999999999765322
Q ss_pred CCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCK 833 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (933)
......|++.|+|||++.+..++.++||||+|+++|+|++|+.||................. .++.
T Consensus 168 ---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~--------~~~~--- 233 (284)
T 2vgo_A 168 ---RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDL--------KFPP--- 233 (284)
T ss_dssp ---CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCC--------CCCT---
T ss_pred ---ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHHHHHhcccc--------CCCC---
Confidence 22345799999999999999999999999999999999999999986554433322211111 1111
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002349 834 DLGAVKKVFQLALLCSKRQPTDRPTMHEVSR 864 (933)
Q Consensus 834 ~~~~~~~l~~li~~cl~~dP~~RPt~~evl~ 864 (933)
..+..+.+++.+|++.||++|||++++++
T Consensus 234 --~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 234 --FLSDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp --TSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred --cCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 12356889999999999999999999986
No 185
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=370.11 Aligned_cols=346 Identities=21% Similarity=0.172 Sum_probs=201.6
Q ss_pred ceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCc
Q 002349 119 KSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNN 198 (933)
Q Consensus 119 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n 198 (933)
+.++.+++.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45666666665 5565443 35666666666666655566666666666666666666555555666666666666666
Q ss_pred cccCccCcCCcCCCCCcEEccccccccCcCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCC
Q 002349 199 SLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPI 278 (933)
Q Consensus 199 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 278 (933)
++++..+..|.++++|++|+|++|+++ +..+..|..+++|+.|+|++|.+++..+..
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~-----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 147 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIV-----------------------ILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCC-----------------------EECTTTTTTCTTCCEEEECCTTCCEECTTS
T ss_pred cCCccCcccccCCCCCCEEECCCCccc-----------------------cCChhHccccccCCEEECCCCccceeChhh
Confidence 655444444555555555555555443 233445566667777777777777666666
Q ss_pred CCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCC
Q 002349 279 LGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLN 358 (933)
Q Consensus 279 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 358 (933)
|.++++|++|+|++|++++..+..+.++++|+.|+|++|.+++..+..|..+++|+.|++++|.+.+.+|.......+|+
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 227 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcccc
Confidence 77777777777777777655555566666666666666666665555566666666666666555544444444444555
Q ss_pred ceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcc
Q 002349 359 SLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQ 438 (933)
Q Consensus 359 ~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 438 (933)
.|++++|+++ ...+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|+
T Consensus 228 ~L~l~~n~l~------------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 228 SLSITHCNLT------------------------AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp EEEEESSCCC------------------------SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred EEECcCCccc------------------------ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc
Confidence 5555555544 3333444555555555555555555555555556666666666666
Q ss_pred cccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcccchhhccccc-eeecCCCCCCCcc
Q 002349 439 LTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSLINCLSLS-VLFIGNPGLCGYW 514 (933)
Q Consensus 439 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~-~~~~~N~~~C~~~ 514 (933)
+++..|..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|+|+|......-..... ..+.++...|.++
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 665556666666666666666666665555555666666666666666665543221111111 3345566666554
No 186
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=8.8e-39 Score=350.93 Aligned_cols=260 Identities=23% Similarity=0.339 Sum_probs=204.8
Q ss_pred cCcceeeecccceeEEEEEEc-----CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecC--CccEE
Q 002349 600 LSEKYIIGYGASSTVYKCVLK-----NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSS--SGNLL 671 (933)
Q Consensus 600 ~~~~~~lG~G~~g~Vy~~~~~-----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--~~~~l 671 (933)
|+..+.||+|+||+||+|.++ +++.||||++.... ....+.+.+|++++++++||||+++++++... ...++
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 488899999999999998753 57889999997654 34567799999999999999999999999874 56789
Q ss_pred EEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 672 FYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
||||+++|+|.+++.. ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 113 v~e~~~~~~L~~~l~~----~~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~ 185 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLPR----HSIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVP 185 (318)
T ss_dssp EECCCTTCBHHHHGGG----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECC
T ss_pred EEecccCCcHHHHHhh----CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCcccccccc
Confidence 9999999999999952 3589999999999999999999976 99999999999999999999999999998765
Q ss_pred cCCCc--eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHh--------hhcccccc
Q 002349 752 VSKSY--TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILS--------KTANNAVM 821 (933)
Q Consensus 752 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~--------~~~~~~~~ 821 (933)
..... ......||..|+|||++.+..++.++||||+|+++|+|++|+.||............ ........
T Consensus 186 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (318)
T 3lxp_A 186 EGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLE 265 (318)
T ss_dssp TTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHh
Confidence 43322 123456888999999999999999999999999999999999999743211000000 00000000
Q ss_pred cccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 822 ETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
....... ....+..+.+++.+||+.||++|||++|+++.|+.+..
T Consensus 266 ~~~~~~~-----~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~ 310 (318)
T 3lxp_A 266 RGERLPR-----PDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHE 310 (318)
T ss_dssp TTCCCCC-----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cccCCCC-----CccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHH
Confidence 0001111 11234678999999999999999999999999987643
No 187
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=1.1e-38 Score=352.76 Aligned_cols=251 Identities=22% Similarity=0.298 Sum_probs=200.3
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcC-CCCceeeeeeEEecCCccEEEE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSI-KHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv~ 673 (933)
..++|+..+.||+|+||+||+|.++ +++.||||++..... ...+|++++.++ +||||+++++++.+++..++||
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ 95 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT 95 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence 4678999999999999999999976 478899999976532 235688888887 7999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCC----CCeEEeecccccc
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKD----FEAHLTDFGIAKS 749 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~----~~~kl~DfGla~~ 749 (933)
||+++|+|.+++. ..+.+++..+..++.|++.||+|||++ +|+||||||+||++.++ +.+||+|||+++.
T Consensus 96 E~~~gg~L~~~i~---~~~~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~ 169 (342)
T 2qr7_A 96 ELMKGGELLDKIL---RQKFFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQ 169 (342)
T ss_dssp CCCCSCBHHHHHH---TCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTTCEE
T ss_pred eCCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCCccc
Confidence 9999999999995 456799999999999999999999976 99999999999998543 3599999999987
Q ss_pred cccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCc--chhHHHHhhhcccccccccCcc
Q 002349 750 LCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNEC--NLHHLILSKTANNAVMETVDPE 827 (933)
Q Consensus 750 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 827 (933)
...... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||.... ...... .....+... ....
T Consensus 170 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~-~~i~~~~~~--~~~~ 245 (342)
T 2qr7_A 170 LRAENG-LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEIL-ARIGSGKFS--LSGG 245 (342)
T ss_dssp CBCTTC-CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHH-HHHHHCCCC--CCST
T ss_pred CcCCCC-ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHH-HHHccCCcc--cCcc
Confidence 643322 2334578999999999988889999999999999999999999997532 112211 111111110 0000
Q ss_pred ccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 828 ISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 828 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
.. ...+..+.+++.+|++.||++|||++|++++
T Consensus 246 ~~-----~~~s~~~~~li~~~L~~dP~~R~t~~~il~h 278 (342)
T 2qr7_A 246 YW-----NSVSDTAKDLVSKMLHVDPHQRLTAALVLRH 278 (342)
T ss_dssp TT-----TTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred cc-----ccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 00 0123578899999999999999999999874
No 188
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=2.2e-40 Score=361.15 Aligned_cols=261 Identities=23% Similarity=0.339 Sum_probs=191.9
Q ss_pred hhccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhc--CCCCceeeeeeEEecCC----ccE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGS--IKHRNLVSLQGYSLSSS----GNL 670 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~~~~----~~~ 670 (933)
.++|...+.||+|+||.||+|.+. ++.||||++... ....+.+|.+++.. ++||||+++++++.... ..+
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 77 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEE
T ss_pred cceeeehhhccCCCCeEEEEEEEc-CcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeE
Confidence 368999999999999999999875 789999998653 34567778888887 79999999999998776 679
Q ss_pred EEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhh--------cCCCCCeeeccCCCCceEeCCCCCeEEe
Q 002349 671 LFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLH--------HDCSPRIIHRDVKSSNILLDKDFEAHLT 742 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~Dikp~NIll~~~~~~kl~ 742 (933)
+||||+++|+|.++++ ...+++..+..++.|++.||+||| +. +|+||||||+||+++.++.+||+
T Consensus 78 lv~e~~~~g~L~~~l~----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nil~~~~~~~kl~ 150 (303)
T 3gxj_A 78 LVSDYHEHGSLFDYLN----RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCCIA 150 (303)
T ss_dssp EEEECCTTCCHHHHHH----HCCBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-CCTTCCC-BC
T ss_pred EEEeccCCCCHHHHHh----ccCcchHHHHHHHHHHHHHHHHHHHHHhhhccCC---CEeeCcCCHHHeEECCCCCEEEe
Confidence 9999999999999995 246788899999999999999999 55 99999999999999999999999
Q ss_pred ecccccccccCCCce---eeeecccccccCccccccC------CCCcchhhHHHHHHHHHHHhC----------CCCCCC
Q 002349 743 DFGIAKSLCVSKSYT---STYIMGTIGYIDPEYARTS------RLTEKSDVYSFGIVLLELLTG----------RKAVDN 803 (933)
Q Consensus 743 DfGla~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~------~~~~~~DvwSlGv~l~elltg----------~~p~~~ 803 (933)
|||+++......... .....||+.|+|||++.+. .+++++|||||||++|||++| +.||..
T Consensus 151 DFg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~ 230 (303)
T 3gxj_A 151 DLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYD 230 (303)
T ss_dssp CCCC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTT
T ss_pred ecCcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeeccccc
Confidence 999997664333221 2334799999999999876 344789999999999999999 666643
Q ss_pred Ccch----hHHHHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCC
Q 002349 804 ECNL----HHLILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAP 873 (933)
Q Consensus 804 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 873 (933)
.... ...... . ......+..+........+..+.+++.+||+.||++|||++++++.|+.+....
T Consensus 231 ~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~~~ 299 (303)
T 3gxj_A 231 LVPSDPSVEEMRKV-V----CEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 299 (303)
T ss_dssp TCC-CCCCC-CHHH-H----TTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CCC-
T ss_pred cCCCCccHHHHHHH-H----HHhhcCCCccccccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhhhc
Confidence 2111 000000 0 111222333333334466788999999999999999999999999999887543
No 189
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=8e-39 Score=362.12 Aligned_cols=268 Identities=19% Similarity=0.245 Sum_probs=209.6
Q ss_pred hccCcceeeecccceeEEEEEEcC-CceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCC--ccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSS--GNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~~lv~ 673 (933)
++|...+.||+|+||+||+|++.. ++.||||++.... ....+.+.+|++++++++||||+++++++.... ..++||
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~ 88 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM 88 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence 578999999999999999999875 7899999997543 334577889999999999999999999998765 679999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEe----CCCCCeEEeecccccc
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILL----DKDFEAHLTDFGIAKS 749 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll----~~~~~~kl~DfGla~~ 749 (933)
||+++|+|.+++........+++..+..++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||+++.
T Consensus 89 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~ 165 (396)
T 4eut_A 89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE 165 (396)
T ss_dssp CCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGGGCEE
T ss_pred ecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCCCceE
Confidence 9999999999996533344599999999999999999999966 99999999999999 7788899999999987
Q ss_pred cccCCCceeeeecccccccCcccccc--------CCCCcchhhHHHHHHHHHHHhCCCCCCCCcc---hhHHHHhhhccc
Q 002349 750 LCVSKSYTSTYIMGTIGYIDPEYART--------SRLTEKSDVYSFGIVLLELLTGRKAVDNECN---LHHLILSKTANN 818 (933)
Q Consensus 750 ~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~DvwSlGv~l~elltg~~p~~~~~~---~~~~~~~~~~~~ 818 (933)
..... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||..... .......... +
T Consensus 166 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~-~ 242 (396)
T 4eut_A 166 LEDDE--QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIIT-G 242 (396)
T ss_dssp CCCGG--GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHH-S
T ss_pred ccCCC--ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhc-C
Confidence 64332 2234579999999998865 4678899999999999999999999963221 1111111111 1
Q ss_pred ccccc-------------cCcccccc-ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 819 AVMET-------------VDPEISAT-CKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 819 ~~~~~-------------~~~~~~~~-~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
..... ....++.. .-.......+.+++.+|++.||++||+++|+++.++.+..
T Consensus 243 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~ 309 (396)
T 4eut_A 243 KPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILH 309 (396)
T ss_dssp CCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHT
T ss_pred CCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhh
Confidence 10000 00001100 1124566788899999999999999999999998877654
No 190
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=1.9e-38 Score=350.89 Aligned_cols=249 Identities=22% Similarity=0.344 Sum_probs=208.2
Q ss_pred hhccCcceeeecccceeEEEEEEcC-CceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 672 (933)
.++|...+.||+|+||.||+|.+.. ++.||+|++.... ....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 3689999999999999999999765 6789999986542 34567789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
|||+++++|.+++. ....+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 120 ~e~~~~~~L~~~~~---~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~ 193 (335)
T 2owb_A 120 LELCRRRSLLELHK---RRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEY 193 (335)
T ss_dssp ECCCTTCBHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECCS
T ss_pred EecCCCCCHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceeccc
Confidence 99999999999984 346799999999999999999999976 999999999999999999999999999987642
Q ss_pred CCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccc
Q 002349 753 SKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 753 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
.. .......||+.|+|||++.+..++.++||||||+++|+|++|+.||................... +.
T Consensus 194 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~--------~~-- 262 (335)
T 2owb_A 194 DG-ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSI--------PK-- 262 (335)
T ss_dssp TT-CCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCC--------CT--
T ss_pred Cc-ccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHhcCCCCC--------Cc--
Confidence 22 22344579999999999999999999999999999999999999998765444333222211111 11
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
.....+.+++.+||+.||++|||++|++++
T Consensus 263 ---~~~~~~~~li~~~l~~dp~~Rps~~ell~~ 292 (335)
T 2owb_A 263 ---HINPVAASLIQKMLQTDPTARPTINELLND 292 (335)
T ss_dssp ---TSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred ---cCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 113467889999999999999999999973
No 191
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.4e-38 Score=355.95 Aligned_cols=265 Identities=22% Similarity=0.275 Sum_probs=208.2
Q ss_pred HHHHHHhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCC-----CCceeeeeeEEe
Q 002349 591 EDIMRMTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIK-----HRNLVSLQGYSL 664 (933)
Q Consensus 591 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~~~~~~~ 664 (933)
++-....++|...+.||+|+||+||+|++. +++.||||++... ....+.+..|+++++.++ ||||+++++++.
T Consensus 28 ~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~ 106 (360)
T 3llt_A 28 KKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFM 106 (360)
T ss_dssp CTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEE
T ss_pred ecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeecccceee
Confidence 333445678999999999999999999975 5788999998643 334566788999999996 999999999999
Q ss_pred cCCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCC---------
Q 002349 665 SSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDK--------- 735 (933)
Q Consensus 665 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~--------- 735 (933)
..+..++||||+ +++|.+++.. .....+++..+..++.|++.||+|||++ +|+||||||+|||++.
T Consensus 107 ~~~~~~lv~e~~-~~~L~~~~~~-~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~~~ 181 (360)
T 3llt_A 107 YYDHMCLIFEPL-GPSLYEIITR-NNYNGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPYFEKSLIT 181 (360)
T ss_dssp ETTEEEEEECCC-CCBHHHHHHH-TTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCTTCCEEEEE
T ss_pred ECCeeEEEEcCC-CCCHHHHHHh-cCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEccccccccccc
Confidence 999999999999 8999999964 2234699999999999999999999966 9999999999999975
Q ss_pred ----------------CCCeEEeecccccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCC
Q 002349 736 ----------------DFEAHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRK 799 (933)
Q Consensus 736 ----------------~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~ 799 (933)
++.+||+|||+|+..... .....||+.|+|||++.+..++.++||||+||++|+|++|+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~ 257 (360)
T 3llt_A 182 VRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY----HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSL 257 (360)
T ss_dssp EECTTTCCEEEEEEESCCCEEECCCTTCEETTSC----CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSC
T ss_pred hhcccccccccccccCCCCEEEEeccCceecCCC----CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCC
Confidence 789999999999864322 234579999999999999999999999999999999999999
Q ss_pred CCCCCcchhHHHHhhhccccccccc------------------CccccccccCHH---------------HHHHHHHHHH
Q 002349 800 AVDNECNLHHLILSKTANNAVMETV------------------DPEISATCKDLG---------------AVKKVFQLAL 846 (933)
Q Consensus 800 p~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~---------------~~~~l~~li~ 846 (933)
||....................... ....+....... ....+.+++.
T Consensus 258 pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~ 337 (360)
T 3llt_A 258 LFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLY 337 (360)
T ss_dssp SCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHH
Confidence 9987655544433222111111000 000000000000 0156779999
Q ss_pred HccCCCCCCCCCHHHHHHH
Q 002349 847 LCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 847 ~cl~~dP~~RPt~~evl~~ 865 (933)
+||+.||++|||++|++++
T Consensus 338 ~~L~~dP~~Rpta~elL~h 356 (360)
T 3llt_A 338 SILQIDPTLRPSPAELLKH 356 (360)
T ss_dssp HHCCSSGGGSCCHHHHTTS
T ss_pred HHhcCChhhCCCHHHHhcC
Confidence 9999999999999999864
No 192
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.3e-39 Score=353.24 Aligned_cols=244 Identities=23% Similarity=0.287 Sum_probs=203.6
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCc--------hhHHHHHHHHHHHhcCCCCceeeeeeEEecC
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYP--------QCLKEFETELETVGSIKHRNLVSLQGYSLSS 666 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 666 (933)
..++|+..+.||+|+||.||+|++. +++.||||++..... ...+.+.+|++++++++||||+++++++.+.
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 4678999999999999999999965 578899999976431 1334577899999999999999999999999
Q ss_pred CccEEEEEecCCC-CHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecc
Q 002349 667 SGNLLFYDFMENG-SLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFG 745 (933)
Q Consensus 667 ~~~~lv~e~~~~g-sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfG 745 (933)
+..++||||+.+| +|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||
T Consensus 102 ~~~~lv~e~~~~g~~l~~~~~---~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg 175 (335)
T 3dls_A 102 GFFQLVMEKHGSGLDLFAFID---RHPRLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDFG 175 (335)
T ss_dssp SEEEEEEECCTTSCBHHHHHH---TCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCT
T ss_pred CEEEEEEEeCCCCccHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEeecc
Confidence 9999999999776 9999995 455799999999999999999999976 99999999999999999999999999
Q ss_pred cccccccCCCceeeeecccccccCccccccCCC-CcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccccccc
Q 002349 746 IAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRL-TEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETV 824 (933)
Q Consensus 746 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 824 (933)
+++...... ......||+.|+|||++.+..+ +.++|||||||++|+|++|+.||....... . ...
T Consensus 176 ~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~--------~----~~~ 241 (335)
T 3dls_A 176 SAAYLERGK--LFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEETV--------E----AAI 241 (335)
T ss_dssp TCEECCTTC--CBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGGT--------T----TCC
T ss_pred cceECCCCC--ceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHHH--------h----hcc
Confidence 998764332 2334679999999999988877 889999999999999999999997522110 0 000
Q ss_pred CccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 825 DPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 825 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
.+ +. ..+..+.+++.+|++.||++|||+++++++-
T Consensus 242 ~~--~~-----~~~~~l~~li~~~L~~dP~~Rps~~ell~hp 276 (335)
T 3dls_A 242 HP--PY-----LVSKELMSLVSGLLQPVPERRTTLEKLVTDP 276 (335)
T ss_dssp CC--SS-----CCCHHHHHHHHHHTCSSGGGSCCHHHHHHCT
T ss_pred CC--Cc-----ccCHHHHHHHHHHccCChhhCcCHHHHhcCc
Confidence 00 00 1235788999999999999999999999864
No 193
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=2.7e-38 Score=367.94 Aligned_cols=252 Identities=25% Similarity=0.345 Sum_probs=206.1
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 672 (933)
..++|+..+.||+|+||+||+|.++ +++.||||++.... ......+.+|++++++++||||+++++++......++|
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 3568999999999999999999976 57899999986432 33467889999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeC---CCCCeEEeecccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLD---KDFEAHLTDFGIAKS 749 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~---~~~~~kl~DfGla~~ 749 (933)
|||+++|+|.+.+. ....+++..+..++.|++.||+|||++ +|+||||||+||+++ .++.+||+|||+++.
T Consensus 100 ~e~~~~~~L~~~~~---~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~ 173 (486)
T 3mwu_A 100 GELYTGGELFDEII---KRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTC 173 (486)
T ss_dssp ECCCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTTT
T ss_pred EEcCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCeE
Confidence 99999999999884 346799999999999999999999966 999999999999995 456799999999987
Q ss_pred cccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccc
Q 002349 750 LCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEIS 829 (933)
Q Consensus 750 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (933)
.... .......||+.|+|||++.+ .++.++||||+||++|+|++|+.||.+................... +...
T Consensus 174 ~~~~--~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~---~~~~ 247 (486)
T 3mwu_A 174 FQQN--TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDL---PQWR 247 (486)
T ss_dssp BCCC------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCS---GGGG
T ss_pred CCCC--CccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCC---cccC
Confidence 5432 22344579999999999876 4899999999999999999999999876554443332222111111 1111
Q ss_pred ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 830 ATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 830 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+..+.+++.+||+.||++|||+.|++++
T Consensus 248 ------~~s~~~~~li~~~L~~dp~~R~t~~~~l~h 277 (486)
T 3mwu_A 248 ------TISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (486)
T ss_dssp ------GSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred ------CCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 123568899999999999999999999985
No 194
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=2.7e-38 Score=343.20 Aligned_cols=253 Identities=23% Similarity=0.332 Sum_probs=201.0
Q ss_pred ccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEecC
Q 002349 599 NLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFME 677 (933)
Q Consensus 599 ~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~ 677 (933)
+|.....||+|+||.||+|.+. +++.||||++........+.+.+|+.++++++||||+++++++...+..++||||++
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 102 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP 102 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence 4555668999999999999975 578899999987666667889999999999999999999999999999999999999
Q ss_pred CCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCC-CCCeEEeecccccccccCCCc
Q 002349 678 NGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDK-DFEAHLTDFGIAKSLCVSKSY 756 (933)
Q Consensus 678 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~-~~~~kl~DfGla~~~~~~~~~ 756 (933)
+++|.+++........+++..+..++.|++.||+|||++ +|+||||||+||+++. ++.+||+|||+++...... .
T Consensus 103 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~-~ 178 (295)
T 2clq_A 103 GGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGIN-P 178 (295)
T ss_dssp EEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEESCC----
T ss_pred CCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeecccccccCCCC-C
Confidence 999999996433344678999999999999999999976 9999999999999987 8999999999998754322 2
Q ss_pred eeeeecccccccCccccccCC--CCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccccC
Q 002349 757 TSTYIMGTIGYIDPEYARTSR--LTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKD 834 (933)
Q Consensus 757 ~~~~~~gt~~y~aPE~~~~~~--~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (933)
......|++.|+|||++.+.. ++.++||||||+++|+|++|+.||................ ...+.++.
T Consensus 179 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~-----~~~~~~~~---- 249 (295)
T 2clq_A 179 CTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMF-----KVHPEIPE---- 249 (295)
T ss_dssp --CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHH-----CCCCCCCT----
T ss_pred cccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccc-----cccccccc----
Confidence 223457999999999987653 7899999999999999999999997543322211111000 11111111
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 835 LGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 835 ~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+..+.+++.+||+.||++|||+++++++
T Consensus 250 -~~~~~~~~li~~~l~~dp~~Rps~~~ll~~ 279 (295)
T 2clq_A 250 -SMSAEAKAFILKCFEPDPDKRACANDLLVD 279 (295)
T ss_dssp -TSCHHHHHHHHHTTCSSTTTSCCHHHHHTS
T ss_pred -cCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 123578899999999999999999999874
No 195
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=2.5e-38 Score=352.55 Aligned_cols=265 Identities=21% Similarity=0.285 Sum_probs=207.3
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecC-------
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSS------- 666 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~------- 666 (933)
.++|+..+.||+|+||+||+|++. +++.||||++.... ......+.+|++++++++||||+++++++...
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 368999999999999999999985 68899999986543 23356788999999999999999999998763
Q ss_pred -CccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecc
Q 002349 667 -SGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFG 745 (933)
Q Consensus 667 -~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfG 745 (933)
+..++||||+++ +|.+.+. .....+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~--~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg 169 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLS--NVLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFG 169 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHH--CTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred CceEEEEEeccCC-CHHHHHh--hccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccch
Confidence 457999999975 7777775 3345799999999999999999999966 99999999999999999999999999
Q ss_pred cccccccCC---CceeeeecccccccCcccccc-CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccc
Q 002349 746 IAKSLCVSK---SYTSTYIMGTIGYIDPEYART-SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVM 821 (933)
Q Consensus 746 la~~~~~~~---~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 821 (933)
+++.+.... ........||+.|+|||++.+ ..++.++||||+||++|+|++|+.||.+..................
T Consensus 170 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~ 249 (351)
T 3mi9_A 170 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSIT 249 (351)
T ss_dssp TCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred hcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCC
Confidence 998764221 122334578999999999876 4589999999999999999999999987766555444333222222
Q ss_pred cccCccccc------------cccCH-------HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHc
Q 002349 822 ETVDPEISA------------TCKDL-------GAVKKVFQLALLCSKRQPTDRPTMHEVSRVLG 867 (933)
Q Consensus 822 ~~~~~~~~~------------~~~~~-------~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~ 867 (933)
....+.... ..... .....+.+++.+|++.||++|||++|++++-.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~ 314 (351)
T 3mi9_A 250 PEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDF 314 (351)
T ss_dssp TTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGG
T ss_pred hhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCCCC
Confidence 211111110 00000 01345889999999999999999999998643
No 196
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=3.5e-38 Score=367.51 Aligned_cols=252 Identities=23% Similarity=0.317 Sum_probs=202.9
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 672 (933)
..++|+..+.||+|+||+||+|+++ +++.||+|++.... ......+.+|++++++++|||||++++++.+....++|
T Consensus 35 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 114 (494)
T 3lij_A 35 LSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLV 114 (494)
T ss_dssp HHHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 3568999999999999999999986 57889999997543 33467789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCC---CCeEEeecccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKD---FEAHLTDFGIAKS 749 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~---~~~kl~DfGla~~ 749 (933)
|||+++|+|.+.+. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.. +.+||+|||+++.
T Consensus 115 ~e~~~~g~L~~~~~---~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~ 188 (494)
T 3lij_A 115 MECYKGGELFDEII---HRMKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAV 188 (494)
T ss_dssp EECCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEE
T ss_pred EecCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCCeE
Confidence 99999999999884 346799999999999999999999966 99999999999999764 5599999999987
Q ss_pred cccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccc
Q 002349 750 LCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEIS 829 (933)
Q Consensus 750 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (933)
.... .......||+.|+|||++. ..++.++||||+||++|+|++|+.||.+................... +...
T Consensus 189 ~~~~--~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~---~~~~ 262 (494)
T 3lij_A 189 FENQ--KKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDS---PEWK 262 (494)
T ss_dssp CBTT--BCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCS---GGGT
T ss_pred CCCC--ccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCc---hhcc
Confidence 6432 2234457999999999886 46999999999999999999999999876654443333222211111 1111
Q ss_pred ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 830 ATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 830 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+..+.+++.+||+.||++|||+.|++++
T Consensus 263 ------~~s~~~~~li~~~L~~dp~~R~s~~e~l~h 292 (494)
T 3lij_A 263 ------NVSEGAKDLIKQMLQFDSQRRISAQQALEH 292 (494)
T ss_dssp ------TSCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred ------cCCHHHHHHHHHHCCCChhhCccHHHHhcC
Confidence 123568899999999999999999999863
No 197
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=9.6e-39 Score=346.08 Aligned_cols=255 Identities=23% Similarity=0.363 Sum_probs=205.2
Q ss_pred hhccCcce-eeecccceeEEEEEEc---CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccE
Q 002349 597 TENLSEKY-IIGYGASSTVYKCVLK---NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNL 670 (933)
Q Consensus 597 ~~~~~~~~-~lG~G~~g~Vy~~~~~---~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 670 (933)
.++|...+ .||+|+||.||+|.+. .++.||||++.... ....+++.+|++++++++||||+++++++ ..+..+
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~ 93 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM 93 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence 35777777 9999999999999653 36789999997643 33467899999999999999999999999 566789
Q ss_pred EEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccc
Q 002349 671 LFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSL 750 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~ 750 (933)
+||||+++++|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 94 lv~e~~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~ 167 (291)
T 1xbb_A 94 LVMEMAELGPLNKYLQ---QNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKAL 167 (291)
T ss_dssp EEEECCTTEEHHHHHH---HCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred EEEEeCCCCCHHHHHH---hCcCCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCcceee
Confidence 9999999999999995 345699999999999999999999976 9999999999999999999999999999876
Q ss_pred ccCCCce--eeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCcc
Q 002349 751 CVSKSYT--STYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPE 827 (933)
Q Consensus 751 ~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (933)
....... .....+++.|+|||.+.+..++.++||||||+++|+|++ |+.||.+............ .. .+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~--~~-----~~~ 240 (291)
T 1xbb_A 168 RADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEK--GE-----RMG 240 (291)
T ss_dssp CTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHT--TC-----CCC
T ss_pred ccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc--CC-----CCC
Confidence 4433322 222356789999999998889999999999999999999 9999986554332222111 11 111
Q ss_pred ccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 828 ISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 828 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
.+. ..+..+.+++.+||+.||++||+++++++.|+.+.
T Consensus 241 ~~~-----~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~ 278 (291)
T 1xbb_A 241 CPA-----GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY 278 (291)
T ss_dssp CCT-----TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred CCC-----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 111 12467889999999999999999999999998764
No 198
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=1.7e-38 Score=348.46 Aligned_cols=256 Identities=20% Similarity=0.292 Sum_probs=198.0
Q ss_pred hccCcc-eeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcC-CCCceeeeeeEEecCCccEEEEE
Q 002349 598 ENLSEK-YIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSI-KHRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 598 ~~~~~~-~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e 674 (933)
+.|.+. +.||+|+||+||+|.+. +++.||||++........+.+.+|++++.++ +||||+++++++.+++..++|||
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e 91 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE 91 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence 467663 68999999999999965 5889999999776656678899999999985 79999999999999999999999
Q ss_pred ecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCC---eEEeecccccccc
Q 002349 675 FMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFE---AHLTDFGIAKSLC 751 (933)
Q Consensus 675 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~---~kl~DfGla~~~~ 751 (933)
|+++|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++. +||+|||+++...
T Consensus 92 ~~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~ 165 (316)
T 2ac3_A 92 KMRGGSILSHIH---KRRHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIK 165 (316)
T ss_dssp CCTTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC---
T ss_pred cCCCCcHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCccccc
Confidence 999999999995 345789999999999999999999976 9999999999999998766 9999999997653
Q ss_pred cCCC------ceeeeecccccccCcccccc-----CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchh------------
Q 002349 752 VSKS------YTSTYIMGTIGYIDPEYART-----SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLH------------ 808 (933)
Q Consensus 752 ~~~~------~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~------------ 808 (933)
.... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.....
T Consensus 166 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 245 (316)
T 2ac3_A 166 LNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPAC 245 (316)
T ss_dssp ----------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHH
T ss_pred cCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhH
Confidence 2211 11223469999999999875 458899999999999999999999997543211
Q ss_pred -HHHHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 809 -HLILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 809 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
............ ..+.... ...+..+.+++.+|++.||++|||++|++++-
T Consensus 246 ~~~~~~~i~~~~~--~~~~~~~-----~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp 297 (316)
T 2ac3_A 246 QNMLFESIQEGKY--EFPDKDW-----AHISCAAKDLISKLLVRDAKQRLSAAQVLQHP 297 (316)
T ss_dssp HHHHHHHHHHCCC--CCCHHHH-----TTSCHHHHHHHHHHSCSSTTTSCCHHHHHHST
T ss_pred HHHHHHHHhccCc--ccCchhc-----ccCCHHHHHHHHHHhhCChhhCCCHHHHhcCh
Confidence 000011111100 0000000 01235788999999999999999999999853
No 199
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=2e-38 Score=369.12 Aligned_cols=251 Identities=22% Similarity=0.334 Sum_probs=208.4
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 672 (933)
.++|+..+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++...+..++|
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 468999999999999999999976 68899999986542 34567899999999999999999999999999999999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEe---CCCCCeEEeecccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILL---DKDFEAHLTDFGIAKS 749 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll---~~~~~~kl~DfGla~~ 749 (933)
|||+.+|+|.+.+. ....+++..+..++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||+++.
T Consensus 105 ~e~~~~~~L~~~~~---~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~ 178 (484)
T 3nyv_A 105 GEVYTGGELFDEII---SRKRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTH 178 (484)
T ss_dssp ECCCCSCBHHHHHH---TCSCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHH
T ss_pred EecCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEE
Confidence 99999999999985 456799999999999999999999976 99999999999999 5678999999999987
Q ss_pred cccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccc
Q 002349 750 LCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEIS 829 (933)
Q Consensus 750 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (933)
+.... ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||.+................... +...
T Consensus 179 ~~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~---~~~~ 252 (484)
T 3nyv_A 179 FEASK--KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFEL---PQWK 252 (484)
T ss_dssp BCCCC--SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCS---GGGG
T ss_pred ccccc--ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCC---cccc
Confidence 64332 2234579999999999876 6899999999999999999999999876655444333222111111 1111
Q ss_pred ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 830 ATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 830 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+..+.+++.+|++.||++|||++|++++
T Consensus 253 ------~~s~~~~~li~~~L~~dp~~R~s~~e~l~h 282 (484)
T 3nyv_A 253 ------KVSESAKDLIRKMLTYVPSMRISARDALDH 282 (484)
T ss_dssp ------GSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred ------cCCHHHHHHHHHHCCCChhHCcCHHHHhhC
Confidence 123578899999999999999999999974
No 200
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=1.1e-38 Score=352.40 Aligned_cols=262 Identities=24% Similarity=0.332 Sum_probs=203.7
Q ss_pred hhccCcceeeecccceeEEEEEEcC-CceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
.++|+..+.||+|+||.||+|++.. ++.||||++.... ....+.+.+|++++++++||||+++++++...+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 3689999999999999999999865 7899999986543 233556889999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
||+++++|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 104 e~~~~~~l~~~~~---~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 177 (331)
T 4aaa_A 104 EFVDHTILDDLEL---FPNGLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP 177 (331)
T ss_dssp ECCSEEHHHHHHH---STTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred ecCCcchHHHHHh---hccCCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCceeecCC
Confidence 9999999998874 345699999999999999999999976 9999999999999999999999999999865432
Q ss_pred CCceeeeecccccccCccccccC-CCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccc------------
Q 002349 754 KSYTSTYIMGTIGYIDPEYARTS-RLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAV------------ 820 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~------------ 820 (933)
. .......||+.|+|||++.+. .++.++||||+||++|+|++|+.||................+..
T Consensus 178 ~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (331)
T 4aaa_A 178 G-EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNP 256 (331)
T ss_dssp -------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCG
T ss_pred c-cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhcc
Confidence 2 223345789999999999875 78999999999999999999999998766554443222111110
Q ss_pred --ccccCcccccccc----CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 821 --METVDPEISATCK----DLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 821 --~~~~~~~~~~~~~----~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
.....+....... ....+..+.+++.+||+.||++|||++|++++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 307 (331)
T 4aaa_A 257 VFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH 307 (331)
T ss_dssp GGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred ccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence 0000011100000 01224678999999999999999999999864
No 201
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=3.6e-38 Score=338.73 Aligned_cols=247 Identities=19% Similarity=0.304 Sum_probs=197.4
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
++|...+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++...+..++||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 90 (276)
T 2h6d_A 11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM 90 (276)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence 57899999999999999999986 68899999986542 234567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
||+++++|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++......
T Consensus 91 e~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~ 164 (276)
T 2h6d_A 91 EYVSGGELFDYIC---KHGRVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 164 (276)
T ss_dssp ECCCSCBHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-
T ss_pred eccCCCcHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeecccccccCCC
Confidence 9999999999995 345689999999999999999999976 9999999999999999999999999999875432
Q ss_pred CCceeeeecccccccCccccccCCC-CcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYARTSRL-TEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATC 832 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (933)
. ......|++.|+|||.+.+..+ +.++||||+|+++|+|++|+.||.................. .+.
T Consensus 165 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~--------~~~-- 232 (276)
T 2h6d_A 165 E--FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFY--------IPE-- 232 (276)
T ss_dssp --------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCC--------CCT--
T ss_pred c--ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCccc--------Cch--
Confidence 2 2234568999999999988765 68999999999999999999999865433322221111100 111
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 833 KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 833 ~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+..+.+++.+|++.||++|||++|++++
T Consensus 233 ---~~~~~l~~li~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 233 ---YLNRSVATLLMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp ---TSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred ---hcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 123568899999999999999999999984
No 202
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=3.9e-38 Score=341.15 Aligned_cols=247 Identities=23% Similarity=0.315 Sum_probs=200.4
Q ss_pred ccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEec----CCccEE
Q 002349 599 NLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLS----SSGNLL 671 (933)
Q Consensus 599 ~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~----~~~~~l 671 (933)
.|...+.||+|+||.||+|.+. ++..||+|++.... ....+.+.+|++++++++||||+++++++.. ....++
T Consensus 27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 106 (290)
T 1t4h_A 27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL 106 (290)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence 4677789999999999999976 46789999986542 3456778999999999999999999998865 345789
Q ss_pred EEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eeeccCCCCceEeC-CCCCeEEeeccccc
Q 002349 672 FYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPR--IIHRDVKSSNILLD-KDFEAHLTDFGIAK 748 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dikp~NIll~-~~~~~kl~DfGla~ 748 (933)
||||+++++|.+++. ....+++..+..++.|++.||+|||++ + |+||||||+||+++ .++.+||+|||++.
T Consensus 107 v~e~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~ 180 (290)
T 1t4h_A 107 VTELMTSGTLKTYLK---RFKVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT 180 (290)
T ss_dssp EEECCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred EEEecCCCCHHHHHH---HccCCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeCCCcc
Confidence 999999999999995 346789999999999999999999965 6 99999999999998 78999999999997
Q ss_pred ccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccc
Q 002349 749 SLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEI 828 (933)
Q Consensus 749 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (933)
.... .......||+.|+|||++.+ .++.++||||+|+++|+|++|+.||................. ... ..
T Consensus 181 ~~~~---~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~-~~~----~~ 251 (290)
T 1t4h_A 181 LKRA---SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGV-KPA----SF 251 (290)
T ss_dssp GCCT---TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTC-CCG----GG
T ss_pred cccc---cccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccC-Ccc----cc
Confidence 5432 22344579999999998875 589999999999999999999999987555544433222111 111 11
Q ss_pred cccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 829 SATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 829 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
... .+..+.+++.+||+.||++|||++|++++
T Consensus 252 ~~~-----~~~~l~~li~~~l~~dp~~Rps~~ell~h 283 (290)
T 1t4h_A 252 DKV-----AIPEVKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp GGC-----CCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred CCC-----CCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence 111 12468899999999999999999999874
No 203
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=1.1e-38 Score=344.13 Aligned_cols=252 Identities=26% Similarity=0.399 Sum_probs=205.3
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEec---------
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLS--------- 665 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~--------- 665 (933)
..++|+..+.||+|+||.||+|.+. +++.||+|++.... +.+.+|++++++++||||+++++++..
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 84 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS 84 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence 4578999999999999999999986 68999999997543 356789999999999999999998854
Q ss_pred -------CCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCC
Q 002349 666 -------SSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFE 738 (933)
Q Consensus 666 -------~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~ 738 (933)
....++||||+++++|.++++. .....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.
T Consensus 85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~ 160 (284)
T 2a19_B 85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEK-RRGEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDTKQ 160 (284)
T ss_dssp ----CCEEEEEEEEECCCCSCBHHHHHHH-GGGSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTE
T ss_pred ccccccCcceEEEEEeccCCCCHHHHHhh-ccCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCCCC
Confidence 3447899999999999999953 1235789999999999999999999966 9999999999999999999
Q ss_pred eEEeecccccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccc
Q 002349 739 AHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANN 818 (933)
Q Consensus 739 ~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 818 (933)
+||+|||++....... ......||+.|+|||.+.+..++.++||||||+++|+|++|..|+........ .....
T Consensus 161 ~kl~Dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~----~~~~~ 234 (284)
T 2a19_B 161 VKIGDFGLVTSLKNDG--KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFT----DLRDG 234 (284)
T ss_dssp EEECCCTTCEESSCCS--CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHHH----HHHTT
T ss_pred EEECcchhheeccccc--cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHHHHH----Hhhcc
Confidence 9999999998764332 22345699999999999999999999999999999999999998853211111 11111
Q ss_pred ccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCCC
Q 002349 819 AVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAPE 874 (933)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~ 874 (933)
.. ... .+..+.+++.+|++.||++|||+.|+++.|+.+...++
T Consensus 235 ~~--------~~~-----~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~ 277 (284)
T 2a19_B 235 II--------SDI-----FDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPE 277 (284)
T ss_dssp CC--------CTT-----SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC---
T ss_pred cc--------ccc-----CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCC
Confidence 11 111 13467889999999999999999999999988766544
No 204
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=7.6e-39 Score=354.08 Aligned_cols=259 Identities=25% Similarity=0.351 Sum_probs=209.6
Q ss_pred hhccCcceeeecccceeEEEEEEcC------CceEEEEEecccC-chhHHHHHHHHHHHhcC-CCCceeeeeeEEecCCc
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKN------CKPVAIKRLYSHY-PQCLKEFETELETVGSI-KHRNLVSLQGYSLSSSG 668 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~ 668 (933)
.++|+..+.||+|+||.||+|.+.. .+.||+|++.... ....+.+.+|+++++++ +||||+++++++...+.
T Consensus 45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 124 (333)
T 2i1m_A 45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGP 124 (333)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCc
Confidence 4689999999999999999999753 2479999997654 34457789999999999 89999999999999999
Q ss_pred cEEEEEecCCCCHHHHhcCCC-----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCC
Q 002349 669 NLLFYDFMENGSLWDILHGPT-----------KKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDF 737 (933)
Q Consensus 669 ~~lv~e~~~~gsL~~~l~~~~-----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~ 737 (933)
.++||||+++|+|.+++.... ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++
T Consensus 125 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~ 201 (333)
T 2i1m_A 125 VLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTNGH 201 (333)
T ss_dssp CEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGCEEEGGG
T ss_pred eEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccceEEECCCC
Confidence 999999999999999985311 134689999999999999999999976 999999999999999999
Q ss_pred CeEEeecccccccccCCCc-eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhh
Q 002349 738 EAHLTDFGIAKSLCVSKSY-TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKT 815 (933)
Q Consensus 738 ~~kl~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~ 815 (933)
.+||+|||+++........ ......||+.|+|||.+.+..++.++||||||+++|||++ |..||.+............
T Consensus 202 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~ 281 (333)
T 2i1m_A 202 VAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVK 281 (333)
T ss_dssp EEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHHHHH
T ss_pred eEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHHHHh
Confidence 9999999999866433322 2233467889999999999999999999999999999998 9999986543333222111
Q ss_pred cccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccC
Q 002349 816 ANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSL 869 (933)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~ 869 (933)
... ....+. ..+..+.+++.+||+.||++|||++|+++.|+.+
T Consensus 282 ~~~------~~~~~~-----~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~ 324 (333)
T 2i1m_A 282 DGY------QMAQPA-----FAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQ 324 (333)
T ss_dssp HTC------CCCCCT-----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred cCC------CCCCCC-----CCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHH
Confidence 110 011111 1235788999999999999999999999998764
No 205
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=1.1e-38 Score=346.57 Aligned_cols=263 Identities=18% Similarity=0.228 Sum_probs=200.7
Q ss_pred HHhhccCcceeeecccceeEEEEEE-cCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEE-ecCCccEEE
Q 002349 595 RMTENLSEKYIIGYGASSTVYKCVL-KNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYS-LSSSGNLLF 672 (933)
Q Consensus 595 ~~~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~-~~~~~~~lv 672 (933)
...++|+..+.||+|+||.||+|.+ .+++.||||++..... ...+.+|++++++++|++++..++++ ...+..++|
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv 83 (296)
T 4hgt_A 6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV 83 (296)
T ss_dssp -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEE
T ss_pred ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEE
Confidence 3457899999999999999999997 4678999998755432 24578899999999988777666655 566778999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEe---CCCCCeEEeecccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILL---DKDFEAHLTDFGIAKS 749 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll---~~~~~~kl~DfGla~~ 749 (933)
|||+ +++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||+++.
T Consensus 84 ~e~~-~~~L~~~~~~--~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~ 157 (296)
T 4hgt_A 84 MELL-GPSLEDLFNF--CSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK 157 (296)
T ss_dssp EECC-CCBHHHHHHH--TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred EEcc-CCCHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCcccee
Confidence 9999 9999999962 345799999999999999999999976 99999999999999 7889999999999987
Q ss_pred cccCCC------ceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHH-hhhccccccc
Q 002349 750 LCVSKS------YTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLIL-SKTANNAVME 822 (933)
Q Consensus 750 ~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~-~~~~~~~~~~ 822 (933)
...... .......||+.|+|||.+.+..++.++|||||||++|+|++|+.||.+......... ..........
T Consensus 158 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~ 237 (296)
T 4hgt_A 158 YRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST 237 (296)
T ss_dssp CBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHS
T ss_pred ccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccc
Confidence 644322 122345799999999999999999999999999999999999999975322111000 0000000000
Q ss_pred ccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 823 TVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
.. +.... ..+..+.+++.+|++.||++|||++++++.|+.+..
T Consensus 238 ~~-~~~~~-----~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~ 280 (296)
T 4hgt_A 238 PI-EVLCK-----GYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH 280 (296)
T ss_dssp CH-HHHTT-----TSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHH
T ss_pred hh-hhhhc-----cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 00 00000 123678999999999999999999999999987654
No 206
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=376.13 Aligned_cols=248 Identities=22% Similarity=0.344 Sum_probs=200.5
Q ss_pred eeecccceeEEEEEEc---CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEecCCCC
Q 002349 605 IIGYGASSTVYKCVLK---NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFMENGS 680 (933)
Q Consensus 605 ~lG~G~~g~Vy~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~gs 680 (933)
.||+|+||.||+|.++ ++..||||+++... ....+++.+|++++++++|||||++++++.. +..++||||+++|+
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~ 421 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP 421 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCB
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCc
Confidence 7999999999999875 45679999997653 3456889999999999999999999999976 56899999999999
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCCce--e
Q 002349 681 LWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSYT--S 758 (933)
Q Consensus 681 L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~~--~ 758 (933)
|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+++......... .
T Consensus 422 L~~~l~~--~~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~ 496 (613)
T 2ozo_A 422 LHKFLVG--KREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTAR 496 (613)
T ss_dssp HHHHHTT--CTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC---------
T ss_pred HHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeec
Confidence 9999963 456799999999999999999999966 99999999999999999999999999998764332221 2
Q ss_pred eeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCccccccccCHHH
Q 002349 759 TYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDLGA 837 (933)
Q Consensus 759 ~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (933)
....+++.|+|||++.+..++.++|||||||++|||++ |+.||.+............ +. ....+. .+
T Consensus 497 ~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~--~~-----~~~~p~-----~~ 564 (613)
T 2ozo_A 497 SAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQ--GK-----RMECPP-----EC 564 (613)
T ss_dssp -----CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHT--TC-----CCCCCT-----TC
T ss_pred cCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHc--CC-----CCCCCC-----cC
Confidence 22346789999999999999999999999999999998 9999987655443322211 11 111111 23
Q ss_pred HHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 838 VKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 838 ~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
+..+.+++.+||+.||++||++++|++.|+.+.
T Consensus 565 ~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~ 597 (613)
T 2ozo_A 565 PPELYALMSDCWIYKWEDRPDFLTVEQRMRACY 597 (613)
T ss_dssp CHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 467899999999999999999999999998754
No 207
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=3.5e-38 Score=345.51 Aligned_cols=260 Identities=25% Similarity=0.376 Sum_probs=198.9
Q ss_pred HhhccCcceeeecccceeEEEEEEcC----CceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCc-
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLKN----CKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSG- 668 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~~----~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~- 668 (933)
..++|...+.||+|+||.||+|.+.. ++.||+|++.... ....+.+.+|++++++++||||+++++++.....
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~ 111 (313)
T 3brb_A 32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQ 111 (313)
T ss_dssp CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC----
T ss_pred CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecccc
Confidence 45688899999999999999998653 4579999987543 3345678999999999999999999999987653
Q ss_pred ----cEEEEEecCCCCHHHHhcCC---CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEE
Q 002349 669 ----NLLFYDFMENGSLWDILHGP---TKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHL 741 (933)
Q Consensus 669 ----~~lv~e~~~~gsL~~~l~~~---~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl 741 (933)
.++||||+++|+|.+++... .....+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||
T Consensus 112 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kl 188 (313)
T 3brb_A 112 GIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDMTVCV 188 (313)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTTSCEEE
T ss_pred CCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEE
Confidence 49999999999999998421 2345799999999999999999999965 9999999999999999999999
Q ss_pred eecccccccccCCCc-eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccc
Q 002349 742 TDFGIAKSLCVSKSY-TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNA 819 (933)
Q Consensus 742 ~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 819 (933)
+|||+++........ ......+++.|+|||.+.+..++.++||||||+++|+|++ |..||................
T Consensus 189 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~-- 266 (313)
T 3brb_A 189 ADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGH-- 266 (313)
T ss_dssp CSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTC--
T ss_pred eecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHcCC--
Confidence 999999876433221 2233467889999999999999999999999999999999 889997655443332221111
Q ss_pred cccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 820 VMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
.+.... ..+..+.+++.+|++.||++|||++++++.|+.+.
T Consensus 267 -----~~~~~~-----~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~ 307 (313)
T 3brb_A 267 -----RLKQPE-----DCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLL 307 (313)
T ss_dssp -----CCCCBT-----TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -----CCCCCc-----cccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 111111 12357889999999999999999999999998764
No 208
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.4e-38 Score=354.03 Aligned_cols=255 Identities=24% Similarity=0.297 Sum_probs=199.3
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCC------
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSS------ 667 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~------ 667 (933)
.++|+..+.||+|+||.||+|.+. +++.||||++.... ....+++.+|++++++++||||+++++++....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 467999999999999999999975 58899999996543 334567899999999999999999999997663
Q ss_pred ccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccc
Q 002349 668 GNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIA 747 (933)
Q Consensus 668 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla 747 (933)
..++||||+ +++|.+++.. ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~----~~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a 175 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKH----EKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLA 175 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred eEEEEEecC-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeecc
Confidence 459999999 7899999852 5689999999999999999999966 9999999999999999999999999999
Q ss_pred cccccCCCceeeeecccccccCcccccc-CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccccccc--
Q 002349 748 KSLCVSKSYTSTYIMGTIGYIDPEYART-SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETV-- 824 (933)
Q Consensus 748 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~-- 824 (933)
+..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+......+.......+......
T Consensus 176 ~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~ 251 (367)
T 1cm8_A 176 RQADSE----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQ 251 (367)
T ss_dssp EECCSS----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHH
T ss_pred cccccc----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHH
Confidence 875322 234578999999999887 6799999999999999999999999987766555433322111111000
Q ss_pred ------------------CccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 825 ------------------DPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 825 ------------------~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
...+..... ..+..+.+++.+|++.||++|||++|++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~mL~~dP~~R~t~~e~l~h 308 (367)
T 1cm8_A 252 RLQSDEAKNYMKGLPELEKKDFASILT--NASPLAVNLLEKMLVLDAEQRVTAGEALAH 308 (367)
T ss_dssp TCSCHHHHHHHHHSCCCCCCCGGGTCT--TCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HhhhHHHHHHHHhCCCCCCCCHHHHCC--CCCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence 000111000 124578899999999999999999999985
No 209
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5.5e-39 Score=357.83 Aligned_cols=254 Identities=24% Similarity=0.289 Sum_probs=204.5
Q ss_pred hhccCcceeeecccceeEEEEEE----cCCceEEEEEecccC----chhHHHHHHHHHHHhcC-CCCceeeeeeEEecCC
Q 002349 597 TENLSEKYIIGYGASSTVYKCVL----KNCKPVAIKRLYSHY----PQCLKEFETELETVGSI-KHRNLVSLQGYSLSSS 667 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~ 667 (933)
.++|+..+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|+++++++ +||||+++++++....
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 36899999999999999999997 367899999986532 23345677899999999 6999999999999999
Q ss_pred ccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccc
Q 002349 668 GNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIA 747 (933)
Q Consensus 668 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla 747 (933)
..++||||+++|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 133 ~~~lv~e~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG~a 206 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLS---QRERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLS 206 (355)
T ss_dssp EEEEEECCCCSCBHHHHHH---HHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEE
T ss_pred eEEEEeecCCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCCCC
Confidence 9999999999999999995 345799999999999999999999966 9999999999999999999999999999
Q ss_pred cccccCCCceeeeecccccccCccccccC--CCCcchhhHHHHHHHHHHHhCCCCCCCCcch---hHHHHhhhccccccc
Q 002349 748 KSLCVSKSYTSTYIMGTIGYIDPEYARTS--RLTEKSDVYSFGIVLLELLTGRKAVDNECNL---HHLILSKTANNAVME 822 (933)
Q Consensus 748 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DvwSlGv~l~elltg~~p~~~~~~~---~~~~~~~~~~~~~~~ 822 (933)
+.+............||+.|+|||++.+. .++.++|||||||++|||++|+.||...... ..........
T Consensus 207 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~----- 281 (355)
T 1vzo_A 207 KEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKS----- 281 (355)
T ss_dssp EECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHC-----
T ss_pred eecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhcc-----
Confidence 87644433334456799999999999863 4789999999999999999999999743221 1111111100
Q ss_pred ccCccccccccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHHHcc
Q 002349 823 TVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRP-----TMHEVSRVLGS 868 (933)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~evl~~L~~ 868 (933)
.+..+. ..+..+.+++.+||+.||++|| +++|++++..-
T Consensus 282 --~~~~~~-----~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~f 325 (355)
T 1vzo_A 282 --EPPYPQ-----EMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFF 325 (355)
T ss_dssp --CCCCCT-----TSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGG
T ss_pred --CCCCCc-----ccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcch
Confidence 011111 1235678899999999999999 99999986543
No 210
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=3.4e-38 Score=350.22 Aligned_cols=265 Identities=23% Similarity=0.332 Sum_probs=211.2
Q ss_pred HHHHHHhhccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhc--CCCCceeeeeeEEecCC-
Q 002349 591 EDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGS--IKHRNLVSLQGYSLSSS- 667 (933)
Q Consensus 591 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~~~~- 667 (933)
..-....++|...+.||+|+||.||+|.+. ++.||||++... ..+.+.+|+++++. ++||||+++++++....
T Consensus 35 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~ 110 (342)
T 1b6c_B 35 LVQRTIARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNG 110 (342)
T ss_dssp HHHHHHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCS
T ss_pred eecccccccEEEEeeecCCCCcEEEEEEEc-CccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCC
Confidence 334456689999999999999999999985 789999998643 34667888888887 78999999999998876
Q ss_pred ---ccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhh--------cCCCCCeeeccCCCCceEeCCC
Q 002349 668 ---GNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLH--------HDCSPRIIHRDVKSSNILLDKD 736 (933)
Q Consensus 668 ---~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~Dikp~NIll~~~ 736 (933)
..++||||+++|+|.+++. ...+++..++.++.|++.||+||| +. +|+||||||+||+++.+
T Consensus 111 ~~~~~~lv~e~~~~g~L~~~l~----~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~ 183 (342)
T 1b6c_B 111 TWTQLWLVSDYHEHGSLFDYLN----RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKN 183 (342)
T ss_dssp SCCCEEEEECCCTTCBHHHHHH----HCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTT
T ss_pred ccceeEEEEeecCCCcHHHHHh----ccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCC
Confidence 7899999999999999995 246899999999999999999999 55 99999999999999999
Q ss_pred CCeEEeecccccccccCCCc---eeeeecccccccCccccccCC------CCcchhhHHHHHHHHHHHhC----------
Q 002349 737 FEAHLTDFGIAKSLCVSKSY---TSTYIMGTIGYIDPEYARTSR------LTEKSDVYSFGIVLLELLTG---------- 797 (933)
Q Consensus 737 ~~~kl~DfGla~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~------~~~~~DvwSlGv~l~elltg---------- 797 (933)
+.+||+|||+++........ ......||+.|+|||++.+.. ++.++|||||||++|||++|
T Consensus 184 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~ 263 (342)
T 1b6c_B 184 GTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDY 263 (342)
T ss_dssp SCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCC
T ss_pred CCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCccccc
Confidence 99999999999876443322 123457999999999998762 34789999999999999999
Q ss_pred CCCCCCCcc----hhHHHHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 798 RKAVDNECN----LHHLILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 798 ~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
+.||..... ...+.. .... ....+.++........+..+.+++.+||+.||++|||+++|+++|+.+..
T Consensus 264 ~~p~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~ 336 (342)
T 1b6c_B 264 QLPYYDLVPSDPSVEEMRK-VVCE----QKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 336 (342)
T ss_dssp CCTTTTTSCSSCCHHHHHH-HHTT----SCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ccCccccCcCcccHHHHHH-HHHH----HHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHH
Confidence 778864321 112111 1111 11223333322344667889999999999999999999999999987653
No 211
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=3.2e-38 Score=359.47 Aligned_cols=255 Identities=25% Similarity=0.338 Sum_probs=194.0
Q ss_pred HHhhccCcceeeecccceeEEEEEEcC-CceEEEEEecccC--------chhHHHHHHHHHHHhcCCCCceeeeeeEEec
Q 002349 595 RMTENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY--------PQCLKEFETELETVGSIKHRNLVSLQGYSLS 665 (933)
Q Consensus 595 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~ 665 (933)
...++|...+.||+|+||+||+|.+.. ++.||||++.... ......+.+|++++++++||||+++++++..
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~ 211 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 211 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence 456799999999999999999999764 7899999986532 1122347899999999999999999999864
Q ss_pred CCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCC---CCeEEe
Q 002349 666 SSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKD---FEAHLT 742 (933)
Q Consensus 666 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~---~~~kl~ 742 (933)
+..++||||+++|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+|||++.+ +.+||+
T Consensus 212 -~~~~lv~e~~~~g~L~~~l~---~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl~ 284 (419)
T 3i6u_A 212 -EDYYIVLELMEGGELFDKVV---GNKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKIT 284 (419)
T ss_dssp -SEEEEEEECCTTCBGGGGTS---SSCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEEC
T ss_pred -CceEEEEEcCCCCcHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEEe
Confidence 45799999999999999984 456799999999999999999999966 99999999999999754 459999
Q ss_pred ecccccccccCCCceeeeecccccccCcccccc---CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccc
Q 002349 743 DFGIAKSLCVSKSYTSTYIMGTIGYIDPEYART---SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNA 819 (933)
Q Consensus 743 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~ 819 (933)
|||+|+.... ........||+.|+|||++.+ ..++.++||||+||++|+|++|+.||............... ..
T Consensus 285 DFG~a~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~-~~ 361 (419)
T 3i6u_A 285 DFGHSKILGE--TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITS-GK 361 (419)
T ss_dssp CSSTTTSCC-------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHT-TC
T ss_pred ecccceecCC--CccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhc-CC
Confidence 9999987643 222345679999999999863 56889999999999999999999999754332222111111 00
Q ss_pred cccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 820 VMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
. . ..+.... ..+..+.+++.+|++.||++|||++|++++-
T Consensus 362 ~-~-~~~~~~~-----~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp 401 (419)
T 3i6u_A 362 Y-N-FIPEVWA-----EVSEKALDLVKKLLVVDPKARFTTEEALRHP 401 (419)
T ss_dssp C-C-CCHHHHT-----TSCHHHHHHHHHHSCSSTTTSCCHHHHHHSG
T ss_pred C-C-CCchhhc-----ccCHHHHHHHHHHccCChhHCcCHHHHhCCc
Confidence 0 0 0011100 1235788999999999999999999999853
No 212
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=4.8e-38 Score=352.60 Aligned_cols=259 Identities=20% Similarity=0.251 Sum_probs=196.6
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCC------
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSS------ 667 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~------ 667 (933)
.++|+..+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+.+++.++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 368999999999999999999976 57889999997542 334567889999999999999999999997665
Q ss_pred ccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccc
Q 002349 668 GNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIA 747 (933)
Q Consensus 668 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla 747 (933)
..++||||+++ +|.+.+. ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 104 ~~~lv~e~~~~-~l~~~~~-----~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 174 (371)
T 2xrw_A 104 DVYIVMELMDA-NLCQVIQ-----MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLA 174 (371)
T ss_dssp EEEEEEECCSE-EHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC-
T ss_pred ceEEEEEcCCC-CHHHHHh-----hccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeecc
Confidence 67999999975 7888884 3489999999999999999999976 9999999999999999999999999999
Q ss_pred cccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccccc----c
Q 002349 748 KSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVME----T 823 (933)
Q Consensus 748 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~----~ 823 (933)
+..... .......||+.|+|||++.+..++.++||||+||++|+|++|+.||.+......+.......+.... .
T Consensus 175 ~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~ 252 (371)
T 2xrw_A 175 RTAGTS--FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKK 252 (371)
T ss_dssp -----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTT
T ss_pred cccccc--cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHH
Confidence 865322 2233457999999999999999999999999999999999999999877655544332221111000 0
Q ss_pred c----------------------Ccccccccc---CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 824 V----------------------DPEISATCK---DLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 824 ~----------------------~~~~~~~~~---~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
+ .+....... .......+.+++.+|++.||++|||++|++++-
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp 320 (371)
T 2xrw_A 253 LQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHP 320 (371)
T ss_dssp SCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSH
T ss_pred hhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCc
Confidence 0 000000000 012356789999999999999999999999743
No 213
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=9.7e-39 Score=353.73 Aligned_cols=270 Identities=25% Similarity=0.366 Sum_probs=196.9
Q ss_pred hhccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHH--HHHHhcCCCCceeeeeeEEec-----CCcc
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETE--LETVGSIKHRNLVSLQGYSLS-----SSGN 669 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E--~~~l~~l~h~niv~~~~~~~~-----~~~~ 669 (933)
.++|+..+.||+|+||.||+|.. +++.||||++.... ...+..| +..+..++||||+++++++.. ....
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 87 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY 87 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence 36889999999999999999987 56899999986543 2334444 444556899999999985532 2356
Q ss_pred EEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC------CCCeeeccCCCCceEeCCCCCeEEee
Q 002349 670 LLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDC------SPRIIHRDVKSSNILLDKDFEAHLTD 743 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~------~~~ivH~Dikp~NIll~~~~~~kl~D 743 (933)
++||||+++|+|.+++.. ...++..+..++.|++.||+|||+.+ ..+|+||||||+|||++.++.+||+|
T Consensus 88 ~lv~e~~~~g~L~~~l~~----~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~D 163 (336)
T 3g2f_A 88 LLVMEYYPNGSLXKYLSL----HTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISD 163 (336)
T ss_dssp EEEECCCTTCBHHHHHHH----CCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECC
T ss_pred EEEEecCCCCcHHHHHhh----cccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEee
Confidence 899999999999999952 34589999999999999999999431 11999999999999999999999999
Q ss_pred cccccccccCCC-------ceeeeecccccccCcccccc-------CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhH
Q 002349 744 FGIAKSLCVSKS-------YTSTYIMGTIGYIDPEYART-------SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHH 809 (933)
Q Consensus 744 fGla~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~-------~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~ 809 (933)
||+++.+..... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||........
T Consensus 164 FG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~ 243 (336)
T 3g2f_A 164 FGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPE 243 (336)
T ss_dssp CTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCC
T ss_pred ccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhH
Confidence 999987643221 11223469999999999987 3567799999999999999999877643221110
Q ss_pred HH---Hhhhccc---------ccccccCccccccc-cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCCC
Q 002349 810 LI---LSKTANN---------AVMETVDPEISATC-KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAPE 874 (933)
Q Consensus 810 ~~---~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~~ 874 (933)
.. ....... .......+.++... .....+..+.+++.+||+.||++|||++|+++.|+.+.....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~ 321 (336)
T 3g2f_A 244 YQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWE 321 (336)
T ss_dssp CCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCC
T ss_pred HHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHH
Confidence 00 0000000 00011111222111 123456789999999999999999999999999988765443
No 214
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=338.21 Aligned_cols=252 Identities=18% Similarity=0.252 Sum_probs=200.4
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC----chhHHHHHHHHHHHhcCCCCceeeeeeEEe--cCCc
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY----PQCLKEFETELETVGSIKHRNLVSLQGYSL--SSSG 668 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~~~~~~~--~~~~ 668 (933)
..++|...+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++. +...
T Consensus 3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 82 (305)
T 2wtk_C 3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQK 82 (305)
T ss_dssp --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---C
T ss_pred cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCe
Confidence 3478999999999999999999975 57899999996542 334677999999999999999999999984 4557
Q ss_pred cEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccc
Q 002349 669 NLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAK 748 (933)
Q Consensus 669 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~ 748 (933)
.++||||++++ +.+++.. .....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++.
T Consensus 83 ~~lv~e~~~~~-l~~~~~~-~~~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~ 157 (305)
T 2wtk_C 83 MYMVMEYCVCG-MQEMLDS-VPEKRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAE 157 (305)
T ss_dssp EEEEEECCSEE-HHHHHHH-STTCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred EEEEehhccCC-HHHHHHh-CcccccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeecccccc
Confidence 89999999876 7777653 2356799999999999999999999976 99999999999999999999999999998
Q ss_pred ccccC-CCceeeeecccccccCccccccCC--CCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccC
Q 002349 749 SLCVS-KSYTSTYIMGTIGYIDPEYARTSR--LTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVD 825 (933)
Q Consensus 749 ~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (933)
..... .........||+.|+|||++.+.. ++.++||||+|+++|||++|+.||.+...............
T Consensus 158 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~------- 230 (305)
T 2wtk_C 158 ALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSY------- 230 (305)
T ss_dssp ECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCC-------
T ss_pred ccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHHHhcCCC-------
Confidence 76422 222234457999999999998654 37899999999999999999999986544333222211111
Q ss_pred ccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 826 PEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 826 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
.++. ..+..+.+++.+|++.||++|||++|++++
T Consensus 231 -~~~~-----~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 231 -AIPG-----DCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp -CCCS-----SSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred -CCCC-----ccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 1111 123578899999999999999999999974
No 215
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=2e-38 Score=344.46 Aligned_cols=259 Identities=18% Similarity=0.210 Sum_probs=204.1
Q ss_pred hhccCcceeeecccceeEEEEEE-cCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEE-ecCCccEEEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVL-KNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYS-LSSSGNLLFYD 674 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~-~~~~~~~lv~e 674 (933)
.++|+..+.||+|+||.||+|++ .+++.||||++..... .+.+.+|++++++++|++++..+.++ ...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence 46899999999999999999997 4688999999865432 35688999999999988866666655 56677799999
Q ss_pred ecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEe---CCCCCeEEeecccccccc
Q 002349 675 FMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILL---DKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 675 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll---~~~~~~kl~DfGla~~~~ 751 (933)
|+ +++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||+++...
T Consensus 86 ~~-~~~L~~~~~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~ 159 (296)
T 3uzp_A 86 LL-GPSLEDLFNF--CSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYR 159 (296)
T ss_dssp CC-CCBHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred ec-CCCHHHHHHh--hccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccc
Confidence 99 8999999962 345799999999999999999999976 99999999999999 488999999999998764
Q ss_pred cCCCc------eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcch---hHHHHhhhccccccc
Q 002349 752 VSKSY------TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNL---HHLILSKTANNAVME 822 (933)
Q Consensus 752 ~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~---~~~~~~~~~~~~~~~ 822 (933)
..... ......||+.|+|||.+.+..++.++|||||||++|||++|+.||.+.... ........ .....
T Consensus 160 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~--~~~~~ 237 (296)
T 3uzp_A 160 DARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISE--KKMST 237 (296)
T ss_dssp CTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHH--HHHHS
T ss_pred ccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcc--cccCC
Confidence 43221 123457999999999999999999999999999999999999999753221 11111000 00000
Q ss_pred ccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 823 TVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
. .+.... ..+..+.+++.+||+.||++|||++++++.|+.+..
T Consensus 238 ~-~~~~~~-----~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~ 280 (296)
T 3uzp_A 238 P-IEVLCK-----GYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH 280 (296)
T ss_dssp C-HHHHTT-----TSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHH
T ss_pred c-hHHHHh-----hCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHH
Confidence 0 000000 123578899999999999999999999999987654
No 216
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=2e-38 Score=345.51 Aligned_cols=253 Identities=21% Similarity=0.286 Sum_probs=201.4
Q ss_pred hhccCcceeeecccceeEEEEEEcC-CceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEe
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDF 675 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 675 (933)
.++|+..+.||+|+||.||+|.+.. ++.||+|++........+.+.+|++++++++||||+++++++..++..++||||
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 97 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEF 97 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEEC
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEe
Confidence 4689999999999999999999874 789999999776666678899999999999999999999999999999999999
Q ss_pred cCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCC
Q 002349 676 MENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKS 755 (933)
Q Consensus 676 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~ 755 (933)
+++++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++...... .
T Consensus 98 ~~~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~ 171 (302)
T 2j7t_A 98 CPGGAVDAIMLE--LDRGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT-L 171 (302)
T ss_dssp CTTEEHHHHHHH--HTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH-H
T ss_pred CCCCcHHHHHHh--hccCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCcccccc-c
Confidence 999999998852 345699999999999999999999976 9999999999999999999999999998643211 1
Q ss_pred ceeeeecccccccCcccc-----ccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccc
Q 002349 756 YTSTYIMGTIGYIDPEYA-----RTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISA 830 (933)
Q Consensus 756 ~~~~~~~gt~~y~aPE~~-----~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (933)
.......||+.|+|||++ .+..++.++||||||+++|+|++|+.||................ ......
T Consensus 172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~--~~~~~~----- 244 (302)
T 2j7t_A 172 QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSD--PPTLLT----- 244 (302)
T ss_dssp HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSC--CCCCSS-----
T ss_pred cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhccC--CcccCC-----
Confidence 122335799999999988 36678999999999999999999999998655443322211111 000000
Q ss_pred cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 831 TCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 831 ~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
....+..+.+++.+|++.||++|||+++++++
T Consensus 245 ---~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 276 (302)
T 2j7t_A 245 ---PSKWSVEFRDFLKIALDKNPETRPSAAQLLEH 276 (302)
T ss_dssp ---GGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTS
T ss_pred ---ccccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 11123578899999999999999999999874
No 217
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=1.9e-38 Score=354.78 Aligned_cols=260 Identities=22% Similarity=0.323 Sum_probs=204.0
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEe
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDF 675 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 675 (933)
++|+..+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++..++..++||||
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 112 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH 112 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEEC
Confidence 57899999999999999999977 57889999997653 34467789999999999999999999999999999999999
Q ss_pred cCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCC
Q 002349 676 MENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKS 755 (933)
Q Consensus 676 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~ 755 (933)
+++++|.+++. ....+++..+..++.|++.||+|||+. .+|+||||||+||+++.++.+||+|||+++.....
T Consensus 113 ~~~~~L~~~l~---~~~~~~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-- 185 (360)
T 3eqc_A 113 MDGGSLDQVLK---KAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-- 185 (360)
T ss_dssp CTTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH--
T ss_pred CCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHh--CCEEcCCccHHHEEECCCCCEEEEECCCCcccccc--
Confidence 99999999995 345789999999999999999999952 28999999999999999999999999999765322
Q ss_pred ceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccC----------
Q 002349 756 YTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVD---------- 825 (933)
Q Consensus 756 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~---------- 825 (933)
......||+.|+|||++.+..++.++||||+||++|+|++|+.||........................
T Consensus 186 -~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (360)
T 3eqc_A 186 -MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPL 264 (360)
T ss_dssp -C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC---------------------
T ss_pred -cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcc
Confidence 223457999999999999999999999999999999999999999864432221111000000000000
Q ss_pred ---------------------ccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 826 ---------------------PEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 826 ---------------------~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
............+..+.+++.+|++.||++|||++|++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 325 (360)
T 3eqc_A 265 NKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVH 325 (360)
T ss_dssp ---------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred cccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence 0000000011124578899999999999999999999864
No 218
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=1.5e-37 Score=338.81 Aligned_cols=249 Identities=26% Similarity=0.393 Sum_probs=208.1
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEe
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDF 675 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 675 (933)
+.|+..+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+.++++++||||+++++++......++||||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 101 (303)
T 3a7i_A 22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY 101 (303)
T ss_dssp GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEe
Confidence 56889999999999999999975 57899999996543 34567899999999999999999999999999999999999
Q ss_pred cCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCC
Q 002349 676 MENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKS 755 (933)
Q Consensus 676 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~ 755 (933)
+++++|.+++. ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++.......
T Consensus 102 ~~~~~L~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~- 173 (303)
T 3a7i_A 102 LGGGSALDLLE----PGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ- 173 (303)
T ss_dssp CTTEEHHHHHT----TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBTTB-
T ss_pred CCCCcHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCccc-
Confidence 99999999984 35799999999999999999999976 99999999999999999999999999998764322
Q ss_pred ceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccccCH
Q 002349 756 YTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDL 835 (933)
Q Consensus 756 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (933)
.......||+.|+|||++.+..++.++||||||+++|+|++|+.||............... ..+.+...
T Consensus 174 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~-------~~~~~~~~---- 242 (303)
T 3a7i_A 174 IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKN-------NPPTLEGN---- 242 (303)
T ss_dssp CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHS-------CCCCCCSS----
T ss_pred cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhcC-------CCCCCccc----
Confidence 2233457999999999999999999999999999999999999999865443332221111 11111111
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 836 GAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 836 ~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
.+..+.+++.+|++.||++|||+++++++.
T Consensus 243 -~~~~l~~li~~~l~~dp~~Rps~~~ll~~~ 272 (303)
T 3a7i_A 243 -YSKPLKEFVEACLNKEPSFRPTAKELLKHK 272 (303)
T ss_dssp -CCHHHHHHHHHHCCSSGGGSCCHHHHTTCH
T ss_pred -cCHHHHHHHHHHcCCChhhCcCHHHHhhCh
Confidence 235688999999999999999999998754
No 219
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=5.1e-38 Score=341.81 Aligned_cols=262 Identities=22% Similarity=0.298 Sum_probs=204.8
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 674 (933)
++|+..+.||+|+||.||+|..+ +++.||||++.... ....+.+.+|++++++++||||+++++++..++..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 57899999999999999999976 57899999986543 2334678899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCC
Q 002349 675 FMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSK 754 (933)
Q Consensus 675 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~ 754 (933)
|++ ++|.+++.. .....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 83 ~~~-~~L~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~ 157 (299)
T 2r3i_A 83 FLH-QDLKKFMDA-SALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV 157 (299)
T ss_dssp CCS-EEHHHHHHH-TTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCS
T ss_pred ccc-CCHHHHHHh-hhccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHeEEcCCCCEEECcchhhhhccCCc
Confidence 997 599999864 2235689999999999999999999976 99999999999999999999999999998754322
Q ss_pred CceeeeecccccccCccccccCC-CCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccccccc---------
Q 002349 755 SYTSTYIMGTIGYIDPEYARTSR-LTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETV--------- 824 (933)
Q Consensus 755 ~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~--------- 824 (933)
.......||+.|+|||.+.+.. ++.++||||||+++|+|++|+.||.+..............+...+..
T Consensus 158 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (299)
T 2r3i_A 158 -RTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD 236 (299)
T ss_dssp -BCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTT
T ss_pred -cccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCchhhhhHhhcCcc
Confidence 1223346899999999998765 79999999999999999999999987665544433222111111110
Q ss_pred -Cccccccc-cC-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 825 -DPEISATC-KD-----LGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 825 -~~~~~~~~-~~-----~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
.+.+.... .+ ...+..+.+++.+|++.||++|||++|++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~h 284 (299)
T 2r3i_A 237 YKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAH 284 (299)
T ss_dssp CCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred cchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence 01111000 00 0123678899999999999999999999984
No 220
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=7.5e-38 Score=365.70 Aligned_cols=252 Identities=25% Similarity=0.335 Sum_probs=204.1
Q ss_pred HhhccCcceeeecccceeEEEEEEcC-CceEEEEEecccCc-------------hhHHHHHHHHHHHhcCCCCceeeeee
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHYP-------------QCLKEFETELETVGSIKHRNLVSLQG 661 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~-------------~~~~~~~~E~~~l~~l~h~niv~~~~ 661 (933)
..++|...+.||+|+||+||+|.++. ++.||+|++..... ...+.+.+|++++++++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 35789999999999999999999764 68899999865421 23567899999999999999999999
Q ss_pred EEecCCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCC---C
Q 002349 662 YSLSSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDF---E 738 (933)
Q Consensus 662 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~---~ 738 (933)
++.++...++||||+++|+|.+.+. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++ .
T Consensus 114 ~~~~~~~~~lv~e~~~gg~L~~~l~---~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~ 187 (504)
T 3q5i_A 114 VFEDKKYFYLVTEFYEGGELFEQII---NRHKFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLLN 187 (504)
T ss_dssp EEECSSEEEEEEECCTTCBHHHHHH---HHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCCSS
T ss_pred EEEcCCEEEEEEecCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCCcc
Confidence 9999999999999999999999984 346799999999999999999999966 999999999999998776 6
Q ss_pred eEEeecccccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccc
Q 002349 739 AHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANN 818 (933)
Q Consensus 739 ~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 818 (933)
+||+|||+++..... .......||+.|+|||++.+ .++.++||||+||++|+|++|+.||.+...............
T Consensus 188 ~kl~Dfg~a~~~~~~--~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~ 264 (504)
T 3q5i_A 188 IKIVDFGLSSFFSKD--YKLRDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKY 264 (504)
T ss_dssp EEECCCTTCEECCTT--SCBCCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC
T ss_pred EEEEECCCCEEcCCC--CccccccCCcCCCCHHHhcc-CCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCC
Confidence 999999999876432 23344579999999999874 699999999999999999999999987655444333222211
Q ss_pred ccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 819 AVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..... ... ..+..+.+++.+|++.||.+|||++|++++
T Consensus 265 ~~~~~---~~~------~~s~~~~~li~~~L~~dp~~R~t~~e~l~h 302 (504)
T 3q5i_A 265 YFDFN---DWK------NISDEAKELIKLMLTYDYNKRCTAEEALNS 302 (504)
T ss_dssp CCCHH---HHT------TSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CCCcc---ccC------CCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 11100 000 123578899999999999999999999964
No 221
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=1.3e-38 Score=342.87 Aligned_cols=257 Identities=22% Similarity=0.279 Sum_probs=205.1
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEe--cCCccEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSL--SSSGNLL 671 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~--~~~~~~l 671 (933)
.++|+..+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++. .....++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 468999999999999999999976 57899999997543 344567899999999999999999999874 3567899
Q ss_pred EEEecCCCCHHHHhcCCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC-----eeeccCCCCceEeCCCCCeEEeecc
Q 002349 672 FYDFMENGSLWDILHGPT-KKKKLDWDTRLKIALGAAQGLAYLHHDCSPR-----IIHRDVKSSNILLDKDFEAHLTDFG 745 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~-----ivH~Dikp~NIll~~~~~~kl~DfG 745 (933)
||||+++++|.+++.... ....+++..++.++.|++.||+|||+. + |+||||||+||+++.++.+||+|||
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg 161 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKLGDFG 161 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEEECCCC
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEEEecCc
Confidence 999999999999985321 234599999999999999999999976 6 9999999999999999999999999
Q ss_pred cccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccC
Q 002349 746 IAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVD 825 (933)
Q Consensus 746 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (933)
+++....... ......|++.|+|||.+.+..++.++||||||+++|+|++|+.||............. ....
T Consensus 162 ~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~--~~~~----- 233 (279)
T 2w5a_A 162 LARILNHDTS-FAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIR--EGKF----- 233 (279)
T ss_dssp HHHHC---CH-HHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH--HTCC-----
T ss_pred hheeeccccc-cccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHHHHHHh--hccc-----
Confidence 9987543221 1223468999999999999999999999999999999999999998654332221111 1111
Q ss_pred ccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccC
Q 002349 826 PEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSL 869 (933)
Q Consensus 826 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~ 869 (933)
+.++. ..+..+.+++.+||+.||++|||++|+++++...
T Consensus 234 ~~~~~-----~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~ 272 (279)
T 2w5a_A 234 RRIPY-----RYSDELNEIITRMLNLKDYHRPSVEEILENPLIL 272 (279)
T ss_dssp CCCCT-----TSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCC
T ss_pred ccCCc-----ccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhh
Confidence 11111 1235788999999999999999999999876543
No 222
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=3.9e-38 Score=352.65 Aligned_cols=270 Identities=19% Similarity=0.232 Sum_probs=203.7
Q ss_pred cCHHHHHHHhhccCcceeeecccceeEEEEEEcCCceEEEEEecccCc-----------hhHHHHHHHHHHHhcCCCCce
Q 002349 588 HVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYP-----------QCLKEFETELETVGSIKHRNL 656 (933)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~-----------~~~~~~~~E~~~l~~l~h~ni 656 (933)
...+++....++|...+.||+|+||.||+|...+++.||||++..... ...+.+.+|++++++++||||
T Consensus 12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i 91 (362)
T 3pg1_A 12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNI 91 (362)
T ss_dssp HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTB
T ss_pred HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCc
Confidence 346778888999999999999999999999988899999999865321 123778999999999999999
Q ss_pred eeeeeEEec-----CCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCce
Q 002349 657 VSLQGYSLS-----SSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNI 731 (933)
Q Consensus 657 v~~~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NI 731 (933)
+++++++.. ....++||||++ |+|.+.+. .....+++..+..++.|++.||+|||++ +|+||||||+||
T Consensus 92 v~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~--~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NI 165 (362)
T 3pg1_A 92 LGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIH--DQRIVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGNI 165 (362)
T ss_dssp CCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHH--CTTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGE
T ss_pred cceeeeEEeccCCCcceEEEEEccCC-CCHHHHHH--hcccCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChHHE
Confidence 999999854 335799999998 58888886 3455799999999999999999999976 999999999999
Q ss_pred EeCCCCCeEEeecccccccccCCCceeeeecccccccCcccccc-CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHH
Q 002349 732 LLDKDFEAHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYART-SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHL 810 (933)
Q Consensus 732 ll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~ 810 (933)
+++.++.+||+|||+++..... .......||+.|+|||++.+ ..++.++||||+||++|+|++|+.||.+.......
T Consensus 166 l~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~ 243 (362)
T 3pg1_A 166 LLADNNDITICDFNLAREDTAD--ANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQL 243 (362)
T ss_dssp EECTTCCEEECCTTC-----------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH
T ss_pred EEcCCCCEEEEecCcccccccc--cccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 9999999999999999754322 22344578999999999877 67899999999999999999999999876544443
Q ss_pred HHhhhcccccc-------------cccCccccccc------cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 811 ILSKTANNAVM-------------ETVDPEISATC------KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 811 ~~~~~~~~~~~-------------~~~~~~~~~~~------~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
.......+... +.......... ........+.+++.+|++.||++|||++|++++
T Consensus 244 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 317 (362)
T 3pg1_A 244 NKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRH 317 (362)
T ss_dssp HHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred HHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcC
Confidence 32211110000 00000000000 000123568899999999999999999999975
No 223
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=9e-38 Score=360.93 Aligned_cols=261 Identities=19% Similarity=0.243 Sum_probs=186.7
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecC-----Cc
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSS-----SG 668 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-----~~ 668 (933)
.++|+..+.||+|+||+||+|+++ +++.||||++.... ....+++.+|++++++++|||||++++++... ..
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 368999999999999999999976 57899999996543 33457789999999999999999999998543 56
Q ss_pred cEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccc
Q 002349 669 NLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAK 748 (933)
Q Consensus 669 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~ 748 (933)
.|+||||+ +++|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+|+
T Consensus 132 ~~lv~e~~-~~~L~~~~~---~~~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla~ 204 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFR---TPVYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLAR 204 (458)
T ss_dssp EEEEECCC-SEEHHHHHH---SSCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCB
T ss_pred EEEEEecc-ccchhhhcc---cCCCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccch
Confidence 89999998 468999985 456799999999999999999999966 99999999999999999999999999998
Q ss_pred ccccCCC--------------------------ceeeeecccccccCcccc-ccCCCCcchhhHHHHHHHHHHHh-----
Q 002349 749 SLCVSKS--------------------------YTSTYIMGTIGYIDPEYA-RTSRLTEKSDVYSFGIVLLELLT----- 796 (933)
Q Consensus 749 ~~~~~~~--------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~DvwSlGv~l~ellt----- 796 (933)
....... ......+||+.|+|||++ .+..++.++||||+||++|||++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~ 284 (458)
T 3rp9_A 205 TVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKEN 284 (458)
T ss_dssp CTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTT
T ss_pred hccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhcccc
Confidence 7642211 122345789999999976 56679999999999999999999
Q ss_pred ------CCCCCCCCcc--------------------hhHHHHhhhccccc--------------------ccccCccccc
Q 002349 797 ------GRKAVDNECN--------------------LHHLILSKTANNAV--------------------METVDPEISA 830 (933)
Q Consensus 797 ------g~~p~~~~~~--------------------~~~~~~~~~~~~~~--------------------~~~~~~~~~~ 830 (933)
|+.+|.+... ..++.......+.. .......+..
T Consensus 285 ~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (458)
T 3rp9_A 285 VAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAE 364 (458)
T ss_dssp CSSGGGCCCSCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGG
T ss_pred ccccccccccCCCCccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHH
Confidence 6666654321 01111000000000 0000000000
Q ss_pred cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 831 TCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 831 ~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
..+ .....+.+++.+||..||++|||++|++++-
T Consensus 365 ~~~--~~s~~~~dLl~~mL~~dP~~R~t~~e~L~Hp 398 (458)
T 3rp9_A 365 RFP--ASSADAIHLLKRMLVFNPNKRITINECLAHP 398 (458)
T ss_dssp GST--TSCHHHHHHHHHHSCSSTTTSCCHHHHHHSG
T ss_pred HCC--CCCHHHHHHHHHHhccCccccCCHHHHhcCH
Confidence 011 1246788999999999999999999999853
No 224
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=1.8e-37 Score=354.86 Aligned_cols=198 Identities=25% Similarity=0.338 Sum_probs=166.7
Q ss_pred hhccCcceeeecccceeEEEEEEcC-CceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecC-----Cc
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSS-----SG 668 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-----~~ 668 (933)
.++|...+.||+|+||.||+|.+.. ++.||||++.... ....+++.+|++++++++||||+++++++... ..
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 4689999999999999999999764 7889999997643 33457789999999999999999999999766 56
Q ss_pred cEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccc
Q 002349 669 NLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAK 748 (933)
Q Consensus 669 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~ 748 (933)
.|+||||++ ++|.+++. ....+++..+..++.|+++||+|||++ +|+||||||+|||++.++.+||+|||+|+
T Consensus 105 ~~lv~e~~~-~~L~~~~~---~~~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla~ 177 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFK---TPIFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLAR 177 (432)
T ss_dssp EEEEEECCS-EEHHHHHH---SSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred EEEEEecCC-cCHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCcc
Confidence 899999996 59999995 456799999999999999999999966 99999999999999999999999999998
Q ss_pred ccccCCCc---------------------eeeeecccccccCcccc-ccCCCCcchhhHHHHHHHHHHHhCCCCC
Q 002349 749 SLCVSKSY---------------------TSTYIMGTIGYIDPEYA-RTSRLTEKSDVYSFGIVLLELLTGRKAV 801 (933)
Q Consensus 749 ~~~~~~~~---------------------~~~~~~gt~~y~aPE~~-~~~~~~~~~DvwSlGv~l~elltg~~p~ 801 (933)
........ .....+||+.|+|||++ .+..++.++||||+||++|||++|..||
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~ 252 (432)
T 3n9x_A 178 TINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH 252 (432)
T ss_dssp EC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence 76432211 12456899999999986 5567999999999999999999855444
No 225
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=4.8e-38 Score=364.88 Aligned_cols=251 Identities=20% Similarity=0.265 Sum_probs=204.5
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
++|...+.||+|+||.||+|+++ +++.||+|++.... ....+.+.+|++++++++||||+++++++...+..++||
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm 264 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM 264 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence 67888899999999999999986 58999999996542 233567889999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 674 DFMENGSLWDILHGPT-KKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
||++||+|.+++.... ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.+..
T Consensus 265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~ 341 (543)
T 3c4z_A 265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAVELKA 341 (543)
T ss_dssp CCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceeeeccC
Confidence 9999999999986422 245799999999999999999999966 999999999999999999999999999987643
Q ss_pred CCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcc---hhHHHHhhhcccccccccCcccc
Q 002349 753 SKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECN---LHHLILSKTANNAVMETVDPEIS 829 (933)
Q Consensus 753 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 829 (933)
... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......... ... ..++
T Consensus 342 ~~~-~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~-~~~------~~~p 413 (543)
T 3c4z_A 342 GQT-KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVL-EQA------VTYP 413 (543)
T ss_dssp TCC-CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHH-HCC------CCCC
T ss_pred CCc-ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHh-hcc------cCCC
Confidence 322 23345899999999999999999999999999999999999999986432 111111111 110 0111
Q ss_pred ccccCHHHHHHHHHHHHHccCCCCCCCCCH-----HHHHH
Q 002349 830 ATCKDLGAVKKVFQLALLCSKRQPTDRPTM-----HEVSR 864 (933)
Q Consensus 830 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~-----~evl~ 864 (933)
. ..+..+.+++.+|++.||++||++ +++.+
T Consensus 414 ~-----~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~ 448 (543)
T 3c4z_A 414 D-----KFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRT 448 (543)
T ss_dssp T-----TSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHT
T ss_pred c-----ccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHc
Confidence 1 123578889999999999999975 66664
No 226
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=348.31 Aligned_cols=263 Identities=25% Similarity=0.401 Sum_probs=207.5
Q ss_pred hhccCcceeeecccceeEEEEEE-----cCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCC--cc
Q 002349 597 TENLSEKYIIGYGASSTVYKCVL-----KNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSS--GN 669 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--~~ 669 (933)
.++|+..+.||+|+||.||+|.+ .+++.||||++........+.+.+|++++++++||||+++++++...+ ..
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 119 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 119 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence 35788899999999999999984 357899999998776667788999999999999999999999987654 68
Q ss_pred EEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccc
Q 002349 670 LLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKS 749 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~ 749 (933)
++||||+++++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 120 ~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~~~~ 194 (326)
T 2w1i_A 120 KLIMEYLPYGSLRDYLQK--HKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKV 194 (326)
T ss_dssp EEEECCCTTCBHHHHHHH--STTSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred EEEEECCCCCCHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcchhh
Confidence 999999999999999963 345699999999999999999999966 999999999999999999999999999987
Q ss_pred cccCCCce--eeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcc---------c
Q 002349 750 LCVSKSYT--STYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTAN---------N 818 (933)
Q Consensus 750 ~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~---------~ 818 (933)
........ .....++..|+|||.+.+..++.++||||||+++|||++|..||................ .
T Consensus 195 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (326)
T 2w1i_A 195 LPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE 274 (326)
T ss_dssp CCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHH
T ss_pred ccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHH
Confidence 65433221 123457788999999999889999999999999999999999986421100000000000 0
Q ss_pred ccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccC
Q 002349 819 AVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSL 869 (933)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~ 869 (933)
.......... ....+..+.+++.+||+.||++|||+.|+++.|+.+
T Consensus 275 ~~~~~~~~~~-----~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l 320 (326)
T 2w1i_A 275 LLKNNGRLPR-----PDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQI 320 (326)
T ss_dssp HHHTTCCCCC-----CTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred HhhcCCCCCC-----CCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 0000000111 112346789999999999999999999999998765
No 227
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=363.01 Aligned_cols=320 Identities=19% Similarity=0.176 Sum_probs=259.6
Q ss_pred cEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecC
Q 002349 95 QSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGN 174 (933)
Q Consensus 95 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N 174 (933)
+.++.++++++ .+|..+. ++|++|||++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 47899999998 7887664 68999999999999888899999999999999999999988999999999999999999
Q ss_pred CCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCCCCccccccceEeccccccccccCcc
Q 002349 175 NLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSV 254 (933)
Q Consensus 175 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~ 254 (933)
++++..+..|.++++|++|+|++|.+++..|..+.++++|++|+|++|++++ ..+..
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~~~~ 147 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-----------------------ISHRA 147 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-----------------------ECTTS
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce-----------------------eChhh
Confidence 9997776778999999999999999999889999999999999998888763 33456
Q ss_pred ccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCcccccccccc
Q 002349 255 IGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLF 334 (933)
Q Consensus 255 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~ 334 (933)
|..+++|+.|+|++|.+++..+..|.++++|+.|+|++|.+.+..+..|..+++|+.|++++|.+.+.+|.......+|+
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 227 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcccc
Confidence 77889999999999999988778899999999999999999988888999999999999999998888888887888999
Q ss_pred ccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCc
Q 002349 335 DLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNK 414 (933)
Q Consensus 335 ~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 414 (933)
.|++++|++++..+..+..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|+
T Consensus 228 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp EEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred EEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 99999999996554567778888888888887776666566666666666666665555545555555555555555555
Q ss_pred cCCCCCCCCCCccccccccccCcccc
Q 002349 415 ISGSIPSPLGDLEHLLKLNLSRNQLT 440 (933)
Q Consensus 415 l~~~~p~~~~~l~~L~~L~Ls~N~l~ 440 (933)
|++..+..|..+++|+.|+|++|.++
T Consensus 308 l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 308 LTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CceeCHhHcCCCcccCEEEccCCCcc
Confidence 44433333444444444444444443
No 228
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=354.63 Aligned_cols=260 Identities=17% Similarity=0.201 Sum_probs=203.4
Q ss_pred hccCcceeeecccceeEEEEEEcC---------CceEEEEEecccCchhHHHHHHHHHHHhcCCCCceee----------
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKN---------CKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVS---------- 658 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~---------- 658 (933)
++|...+.||+|+||.||+|.+.. ++.||||++... +.+.+|++++++++||||++
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 116 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL 116 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence 589999999999999999999764 788999998654 46789999999999999987
Q ss_pred -----eeeEEec-CCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceE
Q 002349 659 -----LQGYSLS-SSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNIL 732 (933)
Q Consensus 659 -----~~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIl 732 (933)
+++++.. +...++||||+ +++|.+++... ....+++..+..++.|++.||+|||++ +|+||||||+||+
T Consensus 117 ~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~-~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIl 191 (352)
T 2jii_A 117 LAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVS-PKHVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAENIF 191 (352)
T ss_dssp CSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHS-GGGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGGGEE
T ss_pred cCccchhhccccCCcEEEEEecCC-CcCHHHHHHhC-CcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEE
Confidence 5677765 67789999999 99999999631 236799999999999999999999976 9999999999999
Q ss_pred eCCCC--CeEEeecccccccccCCCc------eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Q 002349 733 LDKDF--EAHLTDFGIAKSLCVSKSY------TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNE 804 (933)
Q Consensus 733 l~~~~--~~kl~DfGla~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~ 804 (933)
++.++ .+||+|||+++.+...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 192 ~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~ 271 (352)
T 2jii_A 192 VDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNC 271 (352)
T ss_dssp EETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGG
T ss_pred EcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccC
Confidence 99998 8999999999876432211 113347999999999999999999999999999999999999999865
Q ss_pred c-chhHHHHhhhc-ccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 805 C-NLHHLILSKTA-NNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 805 ~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
. ........... ............. ....+..+.+++.+|++.||++|||++++++.|+.+..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~ 336 (352)
T 2jii_A 272 LPNTEDIMKQKQKFVDKPGPFVGPCGH----WIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQ 336 (352)
T ss_dssp TTCHHHHHHHHHHHHHSCCCEECTTSC----EECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhccCChhhhhhhccc----cCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHH
Confidence 4 22222111110 0000000000000 00123678999999999999999999999999987654
No 229
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=351.16 Aligned_cols=255 Identities=22% Similarity=0.296 Sum_probs=188.8
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCC-CCceeeeeeEEe--------cCC
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIK-HRNLVSLQGYSL--------SSS 667 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~--------~~~ 667 (933)
.+|+..+.||+|+||.||+|++. +++.||||++........+.+.+|+.+++++. ||||+++++++. ...
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~ 107 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQA 107 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSE
T ss_pred ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCc
Confidence 47899999999999999999975 57899999997766666778999999999996 999999999984 334
Q ss_pred ccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eeeccCCCCceEeCCCCCeEEeecc
Q 002349 668 GNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPR--IIHRDVKSSNILLDKDFEAHLTDFG 745 (933)
Q Consensus 668 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dikp~NIll~~~~~~kl~DfG 745 (933)
..++||||++ |+|.+++........+++..++.++.|++.||+|||++ + |+||||||+||+++.++.+||+|||
T Consensus 108 ~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg 183 (337)
T 3ll6_A 108 EFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIKLCDFG 183 (337)
T ss_dssp EEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEEBCCCT
T ss_pred eEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEEEecCc
Confidence 4789999996 69999885433456799999999999999999999965 7 9999999999999999999999999
Q ss_pred cccccccCCCce-----------eeeecccccccCcccc---ccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHH
Q 002349 746 IAKSLCVSKSYT-----------STYIMGTIGYIDPEYA---RTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLI 811 (933)
Q Consensus 746 la~~~~~~~~~~-----------~~~~~gt~~y~aPE~~---~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~ 811 (933)
+++......... .....||+.|+|||++ .+..++.++|||||||++|+|++|+.||..........
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~ 263 (337)
T 3ll6_A 184 SATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIVN 263 (337)
T ss_dssp TCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC----------
T ss_pred cceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHHhhc
Confidence 998764322211 1134689999999998 56678999999999999999999999997543321111
Q ss_pred HhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 812 LSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
.... ..... ..+..+.+++.+||+.||++|||++|+++.|+.+..
T Consensus 264 ------~~~~----~~~~~-----~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~ 308 (337)
T 3ll6_A 264 ------GKYS----IPPHD-----TQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAA 308 (337)
T ss_dssp --------CC----CCTTC-----CSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ------Cccc----CCccc-----ccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 0000 00000 112347789999999999999999999999987754
No 230
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=4.8e-38 Score=346.67 Aligned_cols=258 Identities=24% Similarity=0.372 Sum_probs=205.2
Q ss_pred hccCcceeeecccceeEEEEEEc-CCce--EEEEEecccC-chhHHHHHHHHHHHhcC-CCCceeeeeeEEecCCccEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKP--VAIKRLYSHY-PQCLKEFETELETVGSI-KHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~--vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv 672 (933)
++|+..+.||+|+||.||+|++. +++. ||+|++.... ....+.+.+|+++++++ +||||+++++++...+..++|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 57899999999999999999965 4554 4999886532 33456789999999999 899999999999999999999
Q ss_pred EEecCCCCHHHHhcCCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCe
Q 002349 673 YDFMENGSLWDILHGPT-------------KKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEA 739 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~ 739 (933)
|||+++|+|.+++.... ....+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+
T Consensus 105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~ 181 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVA 181 (327)
T ss_dssp ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCE
T ss_pred EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEcCCCeE
Confidence 99999999999996421 234799999999999999999999966 99999999999999999999
Q ss_pred EEeecccccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhccc
Q 002349 740 HLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANN 818 (933)
Q Consensus 740 kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~ 818 (933)
||+|||+++..... .......+++.|+|||++.+..++.++||||+|+++|||++ |+.||.+........... ..
T Consensus 182 kL~Dfg~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~--~~ 257 (327)
T 1fvr_A 182 KIADFGLSRGQEVY--VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLP--QG 257 (327)
T ss_dssp EECCTTCEESSCEE--CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGG--GT
T ss_pred EEcccCcCcccccc--ccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHhh--cC
Confidence 99999999753221 12233457889999999999889999999999999999998 999998654433222111 11
Q ss_pred ccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCC
Q 002349 819 AVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPA 872 (933)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 872 (933)
....... ..+..+.+++.+|++.||++|||++|+++.|+.+...
T Consensus 258 -----~~~~~~~-----~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 301 (327)
T 1fvr_A 258 -----YRLEKPL-----NCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE 301 (327)
T ss_dssp -----CCCCCCT-----TBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred -----CCCCCCC-----CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 1111111 1235788999999999999999999999999876543
No 231
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=2.3e-38 Score=340.61 Aligned_cols=251 Identities=25% Similarity=0.381 Sum_probs=198.2
Q ss_pred hhccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecC-CccEEEEEe
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSS-SGNLLFYDF 675 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-~~~~lv~e~ 675 (933)
.++|+..+.||+|+||.||+|.++ ++.||||++.... ..+.+.+|++++++++||||+++++++... +..++||||
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~ 96 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence 368999999999999999999875 6899999987543 457789999999999999999999997654 478999999
Q ss_pred cCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCC
Q 002349 676 MENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKS 755 (933)
Q Consensus 676 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~ 755 (933)
+++++|.+++.. .....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 97 ~~~~~L~~~l~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~-- 170 (278)
T 1byg_A 97 MAKGSLVDYLRS-RGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST-- 170 (278)
T ss_dssp CTTEEHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC---------
T ss_pred CCCCCHHHHHHh-cccccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeecccccccccc--
Confidence 999999999952 1122388999999999999999999966 9999999999999999999999999999764322
Q ss_pred ceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCccccccccC
Q 002349 756 YTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKD 834 (933)
Q Consensus 756 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (933)
.....+++.|+|||.+.+..++.++||||||+++|+|++ |+.||............. .. ..+....
T Consensus 171 --~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~--~~-----~~~~~~~---- 237 (278)
T 1byg_A 171 --QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVE--KG-----YKMDAPD---- 237 (278)
T ss_dssp -------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHT--TT-----CCCCCCT----
T ss_pred --ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHh--cC-----CCCCCcc----
Confidence 223357889999999999999999999999999999998 999997654332222111 11 1111111
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCC
Q 002349 835 LGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLV 870 (933)
Q Consensus 835 ~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~ 870 (933)
..+..+.+++.+|++.||++|||+.|+++.|+.+.
T Consensus 238 -~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~ 272 (278)
T 1byg_A 238 -GCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIK 272 (278)
T ss_dssp -TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHH
Confidence 12467889999999999999999999999987653
No 232
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.7e-38 Score=342.19 Aligned_cols=252 Identities=25% Similarity=0.361 Sum_probs=203.1
Q ss_pred HhhccCcceeeecccceeEEEEEEcC-CceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 674 (933)
..++|+..+.||+|+||.||+|.+.. ++.||+|++.... ..+.+.+|++++++++||||+++++++...+..++|||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence 45689999999999999999999764 7899999997643 35778999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCC
Q 002349 675 FMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSK 754 (933)
Q Consensus 675 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~ 754 (933)
|+++++|.+++. .....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++.......
T Consensus 105 ~~~~~~L~~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~ 179 (314)
T 3com_A 105 YCGAGSVSDIIR--LRNKTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTM 179 (314)
T ss_dssp CCTTEEHHHHHH--HHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECBTTB
T ss_pred cCCCCCHHHHHH--hcCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhhhhc
Confidence 999999999985 2346799999999999999999999966 99999999999999999999999999998764322
Q ss_pred CceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccccC
Q 002349 755 SYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKD 834 (933)
Q Consensus 755 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (933)
.......|++.|+|||.+.+..++.++||||||+++|+|++|+.||................. +.... .
T Consensus 180 -~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-------~~~~~---~ 248 (314)
T 3com_A 180 -AKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPP-------PTFRK---P 248 (314)
T ss_dssp -SCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCC-------CCCSS---G
T ss_pred -cccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCC-------cccCC---c
Confidence 223345799999999999999999999999999999999999999986554433322111110 01100 0
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 835 LGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 835 ~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
...+..+.+++.+|++.||.+|||+.+++++
T Consensus 249 ~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~~ 279 (314)
T 3com_A 249 ELWSDNFTDFVKQCLVKSPEQRATATQLLQH 279 (314)
T ss_dssp GGSCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred ccCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence 1123578899999999999999999999863
No 233
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=2.5e-38 Score=342.76 Aligned_cols=257 Identities=25% Similarity=0.370 Sum_probs=199.1
Q ss_pred hccCcceeeecccceeEEEEEEcC--Cc--eEEEEEeccc---CchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKN--CK--PVAIKRLYSH---YPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNL 670 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~--~~--~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 670 (933)
++|+..+.||+|+||+||+|.+.. ++ .||||+++.. .....+.+.+|++++++++||||+++++++..+. .+
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~ 96 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK 96 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ce
Confidence 578999999999999999998642 33 6899988754 2345678899999999999999999999998765 88
Q ss_pred EEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccc
Q 002349 671 LFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSL 750 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~ 750 (933)
+||||+++++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 97 ~v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~ 171 (291)
T 1u46_A 97 MVTELAPLGSLLDRLRK--HQGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRAL 171 (291)
T ss_dssp EEEECCTTCBHHHHHHH--HGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred eeEecccCCCHHHHHHh--ccCCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEccccccccc
Confidence 99999999999999952 345689999999999999999999976 9999999999999999999999999999876
Q ss_pred ccCCCce--eeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCcc
Q 002349 751 CVSKSYT--STYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPE 827 (933)
Q Consensus 751 ~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (933)
....... .....+|..|+|||++.+..++.++||||||+++|+|++ |+.||.................. ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~------~~ 245 (291)
T 1u46_A 172 PQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGER------LP 245 (291)
T ss_dssp CC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCC------CC
T ss_pred cccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHHHHccCCC------CC
Confidence 4333221 233467889999999999889999999999999999999 99999865443332222111110 00
Q ss_pred ccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCC
Q 002349 828 ISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVP 871 (933)
Q Consensus 828 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~ 871 (933)
.. ...+..+.+++.+|++.||++|||++++++.|+.+.+
T Consensus 246 ~~-----~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 284 (291)
T 1u46_A 246 RP-----EDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQP 284 (291)
T ss_dssp CC-----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC-
T ss_pred CC-----cCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCc
Confidence 01 1224678899999999999999999999999987654
No 234
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=9.9e-38 Score=344.11 Aligned_cols=261 Identities=25% Similarity=0.351 Sum_probs=206.2
Q ss_pred hhccCcceeeecccceeEEEEEEc------CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCcc
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK------NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGN 669 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 669 (933)
.++|...+.||+|+||.||+|.+. +++.||||++.... .....++.+|+.++++++||||+++++++......
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 468999999999999999999843 46789999997543 34566789999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHhcCCC----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCC---CCCeEEe
Q 002349 670 LLFYDFMENGSLWDILHGPT----KKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDK---DFEAHLT 742 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~----~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~---~~~~kl~ 742 (933)
++||||+++++|.+++.... ....+++..++.++.|++.||+|||++ +|+||||||+||+++. +..+||+
T Consensus 109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~~~kl~ 185 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIG 185 (327)
T ss_dssp EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcceEEEC
Confidence 99999999999999996422 124589999999999999999999966 9999999999999984 4569999
Q ss_pred ecccccccccCCC-ceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhccccc
Q 002349 743 DFGIAKSLCVSKS-YTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAV 820 (933)
Q Consensus 743 DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~ 820 (933)
|||+++....... .......||+.|+|||++.+..++.++||||||+++|+|++ |+.||.............. ...
T Consensus 186 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~--~~~ 263 (327)
T 2yfx_A 186 DFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTS--GGR 263 (327)
T ss_dssp CCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHT--TCC
T ss_pred ccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhc--CCC
Confidence 9999976533222 12233568899999999999999999999999999999998 9999976544332221111 110
Q ss_pred ccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCC
Q 002349 821 METVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPA 872 (933)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~ 872 (933)
+.... ..+..+.+++.+||+.||++||+++++++.|+.+...
T Consensus 264 -----~~~~~-----~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~ 305 (327)
T 2yfx_A 264 -----MDPPK-----NCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 305 (327)
T ss_dssp -----CCCCT-----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred -----CCCCC-----CCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence 11111 1235788999999999999999999999999876543
No 235
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=5.5e-38 Score=354.63 Aligned_cols=258 Identities=24% Similarity=0.278 Sum_probs=198.2
Q ss_pred hccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCc------cEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSG------NLL 671 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~------~~l 671 (933)
.+|+..+.||+|+||+||+|++..+..||+|++..... ...+|+++++.++||||+++++++..... .++
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l 115 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNL 115 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEE
Confidence 47999999999999999999998877899998865432 22479999999999999999999865433 789
Q ss_pred EEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeC-CCCCeEEeeccccccc
Q 002349 672 FYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLD-KDFEAHLTDFGIAKSL 750 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~-~~~~~kl~DfGla~~~ 750 (933)
||||++++.+....+.......+++..+..++.|++.||+|||++ +|+||||||+||+++ .++.+||+|||+|+..
T Consensus 116 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~ 192 (394)
T 4e7w_A 116 VLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSAKIL 192 (394)
T ss_dssp EEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred EeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCcccc
Confidence 999998754443332112356799999999999999999999966 999999999999999 7899999999999876
Q ss_pred ccCCCceeeeecccccccCccccccC-CCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccc----------
Q 002349 751 CVSKSYTSTYIMGTIGYIDPEYARTS-RLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNA---------- 819 (933)
Q Consensus 751 ~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~---------- 819 (933)
.... ......||+.|+|||++.+. .++.++||||+||++|||++|+.||.+..............+.
T Consensus 193 ~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~ 270 (394)
T 4e7w_A 193 IAGE--PNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMN 270 (394)
T ss_dssp CTTC--CCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHC
T ss_pred cCCC--CCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhC
Confidence 3322 22345789999999998765 5899999999999999999999999877655554432221110
Q ss_pred --cccccCcccc-----ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 820 --VMETVDPEIS-----ATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 820 --~~~~~~~~~~-----~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+...+... ... ....+..+.+++.+||+.||++|||+.|++++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 322 (394)
T 4e7w_A 271 PNYMEHKFPQIRPHPFSKVF-RPRTPPDAIDLISRLLEYTPSARLTAIEALCH 322 (394)
T ss_dssp GGGSSSCCCCCCCCCHHHHS-CTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred hhhhhhccccccCCcHHHhc-cccCCHHHHHHHHHHhCCChhhCCCHHHHhcC
Confidence 0000000000 000 01124678999999999999999999999975
No 236
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=6.4e-38 Score=348.93 Aligned_cols=261 Identities=21% Similarity=0.299 Sum_probs=206.9
Q ss_pred hhccCcceeeecccceeEEEEEEcCCceEEEEEecccCch-----------------hHHHHHHHHHHHhcCCCCceeee
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQ-----------------CLKEFETELETVGSIKHRNLVSL 659 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~-----------------~~~~~~~E~~~l~~l~h~niv~~ 659 (933)
.++|...+.||+|+||.||+|.+ +++.||||++...... ..+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 36899999999999999999999 8899999998653211 11789999999999999999999
Q ss_pred eeEEecCCccEEEEEecCCCCHHHH------hcCCCCCCCCCHHHHHHHHHHHHHHHHHhhc-CCCCCeeeccCCCCceE
Q 002349 660 QGYSLSSSGNLLFYDFMENGSLWDI------LHGPTKKKKLDWDTRLKIALGAAQGLAYLHH-DCSPRIIHRDVKSSNIL 732 (933)
Q Consensus 660 ~~~~~~~~~~~lv~e~~~~gsL~~~------l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~-~~~~~ivH~Dikp~NIl 732 (933)
++++.+.+..++||||+++++|.++ +.. .....+++..+..++.|++.||+|||+ + +|+||||||+||+
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~-~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~p~Nil 184 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDK-NYTCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVKPSNIL 184 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCS-SSCCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCCGGGEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhh-ccccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCChHhEE
Confidence 9999999999999999999999998 532 225789999999999999999999996 5 9999999999999
Q ss_pred eCCCCCeEEeecccccccccCCCceeeeecccccccCccccccC-CCCc-chhhHHHHHHHHHHHhCCCCCCCCcchhHH
Q 002349 733 LDKDFEAHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTS-RLTE-KSDVYSFGIVLLELLTGRKAVDNECNLHHL 810 (933)
Q Consensus 733 l~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~DvwSlGv~l~elltg~~p~~~~~~~~~~ 810 (933)
++.++.+||+|||.+...... ......|++.|+|||++.+. .++. ++||||+|+++|||++|+.||.........
T Consensus 185 ~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~ 261 (348)
T 2pml_X 185 MDKNGRVKLSDFGESEYMVDK---KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVEL 261 (348)
T ss_dssp ECTTSCEEECCCTTCEECBTT---EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHH
T ss_pred EcCCCcEEEeccccccccccc---cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHH
Confidence 999999999999999875332 33446799999999999887 6666 999999999999999999999876553332
Q ss_pred HHhhhcc-cccccccCccccc------cccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 811 ILSKTAN-NAVMETVDPEISA------TCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 811 ~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
....... ............. .......+..+.+++.+||+.||++|||++|++++
T Consensus 262 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~h 323 (348)
T 2pml_X 262 FNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKH 323 (348)
T ss_dssp HHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred HHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 2221111 1111000000000 00001234678999999999999999999999874
No 237
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=1.3e-37 Score=338.32 Aligned_cols=253 Identities=28% Similarity=0.382 Sum_probs=206.3
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---------chhHHHHHHHHHHHhcCC-CCceeeeeeEEe
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---------PQCLKEFETELETVGSIK-HRNLVSLQGYSL 664 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---------~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~ 664 (933)
..++|+..+.||+|+||.||+|.++ +++.||||++.... ....+.+.+|+++++++. ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 3468999999999999999999986 57899999986542 123456789999999995 999999999999
Q ss_pred cCCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeec
Q 002349 665 SSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDF 744 (933)
Q Consensus 665 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~Df 744 (933)
.....++||||+++++|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 95 ~~~~~~lv~e~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~df 168 (298)
T 1phk_A 95 TNTFFFLVFDLMKKGELFDYLT---EKVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDF 168 (298)
T ss_dssp CSSEEEEEEECCTTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCC
T ss_pred cCCeEEEEEeccCCCcHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEEEecc
Confidence 9999999999999999999995 346799999999999999999999976 9999999999999999999999999
Q ss_pred ccccccccCCCceeeeecccccccCccccc------cCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccc
Q 002349 745 GIAKSLCVSKSYTSTYIMGTIGYIDPEYAR------TSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANN 818 (933)
Q Consensus 745 Gla~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 818 (933)
|++....... ......|++.|+|||++. ...++.++||||||+++|+|++|+.||.................
T Consensus 169 g~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~ 246 (298)
T 1phk_A 169 GFSCQLDPGE--KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNY 246 (298)
T ss_dssp TTCEECCTTC--CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCC
T ss_pred cchhhcCCCc--ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHHHHHhcCCc
Confidence 9998764322 233457999999999885 45688999999999999999999999986654433322221111
Q ss_pred ccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 819 AVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
... .+.. ...+..+.+++.+|++.||++|||++|++++
T Consensus 247 ~~~---~~~~------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 284 (298)
T 1phk_A 247 QFG---SPEW------DDYSDTVKDLVSRFLVVQPQKRYTAEEALAH 284 (298)
T ss_dssp CCC---TTTG------GGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred ccC---cccc------cccCHHHHHHHHHHccCCcccCCCHHHHHhC
Confidence 111 0110 1124578899999999999999999999874
No 238
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=6.8e-39 Score=360.51 Aligned_cols=242 Identities=16% Similarity=0.180 Sum_probs=188.4
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEeccc---CchhHHHHHHHH---HHHhcCCCCceeeee-------eE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSH---YPQCLKEFETEL---ETVGSIKHRNLVSLQ-------GY 662 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~---~~l~~l~h~niv~~~-------~~ 662 (933)
.++|...+.||+|+||.||+|.+. +++.||||++... .....+.+.+|+ +.+++++|||||+++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 367888999999999999999964 5899999999743 334567899999 555566899999998 66
Q ss_pred EecCCc-----------------cEEEEEecCCCCHHHHhcCCC----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCe
Q 002349 663 SLSSSG-----------------NLLFYDFMENGSLWDILHGPT----KKKKLDWDTRLKIALGAAQGLAYLHHDCSPRI 721 (933)
Q Consensus 663 ~~~~~~-----------------~~lv~e~~~~gsL~~~l~~~~----~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~i 721 (933)
+..++. .++||||+ +|+|.+++.... ....+++..+..++.|++.||+|||++ +|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---Ce
Confidence 655432 78999999 679999995311 112344588889999999999999976 99
Q ss_pred eeccCCCCceEeCCCCCeEEeecccccccccCCCceeeeecccccccCccccccC-----------CCCcchhhHHHHHH
Q 002349 722 IHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTS-----------RLTEKSDVYSFGIV 790 (933)
Q Consensus 722 vH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~DvwSlGv~ 790 (933)
+||||||+|||++.++.+||+|||+|+.... ......| +.|+|||++.+. .++.++|||||||+
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~i 302 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLV 302 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTC----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCC----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHH
Confidence 9999999999999999999999999986322 3344567 999999999887 89999999999999
Q ss_pred HHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002349 791 LLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSR 864 (933)
Q Consensus 791 l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~ 864 (933)
+|||++|+.||.+........ ....... ..+..+.+++.+||+.||++|||+.|+++
T Consensus 303 l~elltg~~Pf~~~~~~~~~~-----------~~~~~~~------~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 359 (377)
T 3byv_A 303 IYWIWCADLPITKDAALGGSE-----------WIFRSCK------NIPQPVRALLEGFLRYPKEDRLLPLQAME 359 (377)
T ss_dssp HHHHHHSSCCC------CCSG-----------GGGSSCC------CCCHHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred HHHHHHCCCCCcccccccchh-----------hhhhhcc------CCCHHHHHHHHHHcCCCchhCCCHHHHhh
Confidence 999999999997543221110 0000000 12357889999999999999999999986
No 239
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=5.5e-38 Score=374.40 Aligned_cols=247 Identities=23% Similarity=0.374 Sum_probs=199.0
Q ss_pred eeeecccceeEEEEEEc---CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEEecCC
Q 002349 604 YIIGYGASSTVYKCVLK---NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFMEN 678 (933)
Q Consensus 604 ~~lG~G~~g~Vy~~~~~---~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~ 678 (933)
+.||+|+||+||+|.+. .++.||||+++... ....+++.+|++++++++|||||++++++.. +..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 47999999999999754 35789999997643 3346789999999999999999999999964 458899999999
Q ss_pred CCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCCc--
Q 002349 679 GSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSY-- 756 (933)
Q Consensus 679 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~-- 756 (933)
|+|.++++ ....+++..+..++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+|+.+......
T Consensus 454 g~L~~~l~---~~~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~ 527 (635)
T 4fl3_A 454 GPLNKYLQ---QNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK 527 (635)
T ss_dssp EEHHHHHH---HCTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC------
T ss_pred CCHHHHHh---hCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccc
Confidence 99999995 456799999999999999999999976 9999999999999999999999999999876433321
Q ss_pred eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCccccccccCH
Q 002349 757 TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDL 835 (933)
Q Consensus 757 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (933)
......+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+............. . ....+.
T Consensus 528 ~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~--~-----~~~~p~----- 595 (635)
T 4fl3_A 528 AQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKG--E-----RMGCPA----- 595 (635)
T ss_dssp -------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT--C-----CCCCCT-----
T ss_pred cccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC--C-----CCCCCC-----
Confidence 2233457889999999999999999999999999999998 99999876544332222111 1 111111
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccC
Q 002349 836 GAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSL 869 (933)
Q Consensus 836 ~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~ 869 (933)
.++..+.+++..||+.||++||++++|++.|+.+
T Consensus 596 ~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 629 (635)
T 4fl3_A 596 GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 629 (635)
T ss_dssp TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 2346789999999999999999999999998754
No 240
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=349.45 Aligned_cols=251 Identities=16% Similarity=0.164 Sum_probs=202.8
Q ss_pred hhccCcceeeecccceeEEEEE------EcCCceEEEEEecccCchhHHHHHHHHHHHhcCC---CCceeeeeeEEecCC
Q 002349 597 TENLSEKYIIGYGASSTVYKCV------LKNCKPVAIKRLYSHYPQCLKEFETELETVGSIK---HRNLVSLQGYSLSSS 667 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~------~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~~~~~~~~~~ 667 (933)
.++|...+.||+|+||+||+|. ...++.||||++.... ..++.+|++++++++ |+||+++++++...+
T Consensus 64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~ 140 (365)
T 3e7e_A 64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN---PWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQN 140 (365)
T ss_dssp SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC---HHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSS
T ss_pred CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC---hhHHHHHHHHHHHhhhhhhhhhhhhheeeecCC
Confidence 3678999999999999999994 3457899999997643 456778888888886 999999999999999
Q ss_pred ccEEEEEecCCCCHHHHhcCC--CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCC----------
Q 002349 668 GNLLFYDFMENGSLWDILHGP--TKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDK---------- 735 (933)
Q Consensus 668 ~~~lv~e~~~~gsL~~~l~~~--~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~---------- 735 (933)
..++||||+++|+|.++++.. .....+++..+..++.|++.||+|||++ +|+||||||+|||++.
T Consensus 141 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~~~~~~~~ 217 (365)
T 3e7e_A 141 GSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDDEDD 217 (365)
T ss_dssp CEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGTCC-----
T ss_pred CcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccccCcccccc
Confidence 999999999999999999521 1356799999999999999999999965 9999999999999998
Q ss_pred -CCCeEEeeccccccccc-CCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHh
Q 002349 736 -DFEAHLTDFGIAKSLCV-SKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILS 813 (933)
Q Consensus 736 -~~~~kl~DfGla~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~ 813 (933)
++.+||+|||+|+.+.. .........+||+.|+|||++.+..++.++|||||||++|||++|+.||.......
T Consensus 218 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~----- 292 (365)
T 3e7e_A 218 LSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGE----- 292 (365)
T ss_dssp -CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTE-----
T ss_pred ccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCc-----
Confidence 89999999999976532 22333455689999999999999999999999999999999999999996432100
Q ss_pred hhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCC-CCHHHHHHHHccCC
Q 002349 814 KTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDR-PTMHEVSRVLGSLV 870 (933)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~R-Pt~~evl~~L~~~~ 870 (933)
... ...+... ...+.+.+++..|++.+|.+| |+++++.+.|+...
T Consensus 293 -----~~~---~~~~~~~----~~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l 338 (365)
T 3e7e_A 293 -----CKP---EGLFRRL----PHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVF 338 (365)
T ss_dssp -----EEE---CSCCTTC----SSHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHH
T ss_pred -----eee---chhcccc----CcHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHH
Confidence 000 0111111 123567788999999999998 67888888777654
No 241
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=1.3e-37 Score=336.66 Aligned_cols=247 Identities=19% Similarity=0.264 Sum_probs=200.8
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcC-CCCceeeeeeEEecCCccEE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSI-KHRNLVSLQGYSLSSSGNLL 671 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~l 671 (933)
..++|+..+.||+|+||+||+|.+. +++.||+|++.... .....++.+|+..+.++ +||||+++++++.+++..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l 88 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI 88 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence 4578999999999999999999986 68899999987642 34456788999999999 99999999999999999999
Q ss_pred EEEecCCCCHHHHhcCCC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCC--------------
Q 002349 672 FYDFMENGSLWDILHGPT-KKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKD-------------- 736 (933)
Q Consensus 672 v~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~-------------- 736 (933)
||||+++++|.+++.... ....+++..+..++.|++.||+|||++ +|+||||||+||+++.+
T Consensus 89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~ 165 (289)
T 1x8b_A 89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDEDD 165 (289)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC----------------
T ss_pred EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCccccccccccc
Confidence 999999999999995311 125689999999999999999999976 99999999999999844
Q ss_pred -----CCeEEeecccccccccCCCceeeeecccccccCccccccC-CCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHH
Q 002349 737 -----FEAHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTS-RLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHL 810 (933)
Q Consensus 737 -----~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~ 810 (933)
..+||+|||.++...... ...||+.|+|||.+.+. .+++++|||||||++|+|++|..++.........
T Consensus 166 ~~~~~~~~kl~Dfg~~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~ 240 (289)
T 1x8b_A 166 WASNKVMFKIGDLGHVTRISSPQ-----VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQWHEI 240 (289)
T ss_dssp ----CCCEEECCCTTCEETTCSC-----CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHHHHHH
T ss_pred ccCCceEEEEcccccccccCCcc-----ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhHHHHH
Confidence 479999999998764322 23589999999999876 5678999999999999999999877654322221
Q ss_pred HHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 811 ILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
. ... .+.++.. .+..+.+++.+|++.||++|||++|++++
T Consensus 241 ~-----~~~-----~~~~~~~-----~~~~~~~li~~~l~~dp~~Rps~~~ll~h 280 (289)
T 1x8b_A 241 R-----QGR-----LPRIPQV-----LSQEFTELLKVMIHPDPERRPSAMALVKH 280 (289)
T ss_dssp H-----TTC-----CCCCSSC-----CCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred H-----cCC-----CCCCCcc-----cCHHHHHHHHHHhCCCcccCCCHHHHhhC
Confidence 1 111 1111111 23578899999999999999999999875
No 242
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=4.6e-38 Score=351.31 Aligned_cols=258 Identities=25% Similarity=0.285 Sum_probs=188.1
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecC------C
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSS------S 667 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~------~ 667 (933)
.++|+..+.||+|+||.||+|.+. +++.||||++.... ....+++.+|++++++++||||+++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 468999999999999999999965 57899999996542 33456788999999999999999999998754 5
Q ss_pred ccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccc
Q 002349 668 GNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIA 747 (933)
Q Consensus 668 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla 747 (933)
..++||||+ +++|.+++. ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 108 ~~~lv~e~~-~~~L~~~~~----~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG~a 179 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVK----CQKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLA 179 (367)
T ss_dssp CCEEEEECC-CEECC---------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC----
T ss_pred eEEEEeccc-CCCHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeecccc
Confidence 579999999 689998884 35799999999999999999999966 9999999999999999999999999999
Q ss_pred cccccCCCceeeeecccccccCcccccc-CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCc
Q 002349 748 KSLCVSKSYTSTYIMGTIGYIDPEYART-SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDP 826 (933)
Q Consensus 748 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (933)
+..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+......+.......+........
T Consensus 180 ~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~ 255 (367)
T 2fst_X 180 RHTADE----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLK 255 (367)
T ss_dssp ---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHT
T ss_pred cccccc----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence 865321 234579999999999887 678999999999999999999999998776655443332211111000000
Q ss_pred ccc------------c-cccCH-----HHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 827 EIS------------A-TCKDL-----GAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 827 ~~~------------~-~~~~~-----~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
.+. . ..... .....+.+++.+|++.||++|||++|++++-
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~hp 313 (367)
T 2fst_X 256 KISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHA 313 (367)
T ss_dssp TCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSG
T ss_pred HhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcCh
Confidence 000 0 00000 1135688999999999999999999999753
No 243
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=8.8e-38 Score=359.57 Aligned_cols=259 Identities=19% Similarity=0.256 Sum_probs=204.0
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCC-CceeeeeeEEecCCccEEEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKH-RNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~~~~~~~~~~~~~lv~e 674 (933)
.++|+..++||+|+||.||+|.+. +++.||||++..... ..++.+|+++++.++| ++|..+..++...+..++|||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 368999999999999999999974 588999998765432 2457889999999976 566666777777888899999
Q ss_pred ecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEe---CCCCCeEEeecccccccc
Q 002349 675 FMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILL---DKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 675 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll---~~~~~~kl~DfGla~~~~ 751 (933)
|+ +++|.+++.. ....+++..++.++.||+.||+|||++ +|+||||||+|||+ +.++.+||+|||+++.+.
T Consensus 84 ~~-g~sL~~ll~~--~~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~ 157 (483)
T 3sv0_A 84 LL-GPSLEDLFNF--CSRKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYR 157 (483)
T ss_dssp CC-CCBHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred CC-CCCHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcceecc
Confidence 99 9999999962 346799999999999999999999976 99999999999999 688999999999998765
Q ss_pred cCCCc------eeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHH-hhhccccccccc
Q 002349 752 VSKSY------TSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLIL-SKTANNAVMETV 824 (933)
Q Consensus 752 ~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~-~~~~~~~~~~~~ 824 (933)
..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+......... ............
T Consensus 158 ~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~ 237 (483)
T 3sv0_A 158 DTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSI 237 (483)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCH
T ss_pred CCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccH
Confidence 43321 12256799999999999999999999999999999999999999986433211111 111111110000
Q ss_pred CccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccC
Q 002349 825 DPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSL 869 (933)
Q Consensus 825 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~ 869 (933)
..+.. ..+.++.+++..||+.||++||++++|++.|+.+
T Consensus 238 -~~l~~-----~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l 276 (483)
T 3sv0_A 238 -EALCR-----GYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDL 276 (483)
T ss_dssp -HHHHT-----TSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred -HHHhc-----CCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 00101 1246789999999999999999999999988665
No 244
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=1e-37 Score=374.68 Aligned_cols=250 Identities=20% Similarity=0.241 Sum_probs=207.9
Q ss_pred HhhccCcceeeecccceeEEEEEEcC-CceEEEEEecccC---chhHHHHHHHHHHHhcC-CCCceeeeeeEEecCCccE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY---PQCLKEFETELETVGSI-KHRNLVSLQGYSLSSSGNL 670 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~ 670 (933)
..++|+..+.||+|+||.||+|+++. ++.||||+++... ....+.+..|..++..+ +||+|+++++++.+.+..|
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 45789999999999999999999764 7789999997532 33456788899999988 7999999999999999999
Q ss_pred EEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccc
Q 002349 671 LFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSL 750 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~ 750 (933)
+||||+++|+|.++++ ..+.+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+|+..
T Consensus 419 lV~E~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~~~ 492 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQ---QVGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEN 492 (674)
T ss_dssp EEEECCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCEEC
T ss_pred EEEeCcCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceeecc
Confidence 9999999999999995 346799999999999999999999966 9999999999999999999999999999864
Q ss_pred ccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccc
Q 002349 751 CVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISA 830 (933)
Q Consensus 751 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (933)
... .......+||+.|+|||++.+..++.++|||||||++|||++|+.||.+................+. .
T Consensus 493 ~~~-~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~p--------~ 563 (674)
T 3pfq_A 493 IWD-GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYP--------K 563 (674)
T ss_dssp CCT-TCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHSSCCCCC--------T
T ss_pred ccC-CcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCC--------c
Confidence 322 2234456899999999999999999999999999999999999999987655444433322211111 1
Q ss_pred cccCHHHHHHHHHHHHHccCCCCCCCCCH-----HHHHHH
Q 002349 831 TCKDLGAVKKVFQLALLCSKRQPTDRPTM-----HEVSRV 865 (933)
Q Consensus 831 ~~~~~~~~~~l~~li~~cl~~dP~~RPt~-----~evl~~ 865 (933)
..+.++.+++.+||+.||++||++ +||.++
T Consensus 564 -----~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h 598 (674)
T 3pfq_A 564 -----SMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH 598 (674)
T ss_dssp -----TSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSS
T ss_pred -----cCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcC
Confidence 123578899999999999999997 777653
No 245
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=6.2e-38 Score=341.81 Aligned_cols=261 Identities=29% Similarity=0.413 Sum_probs=189.3
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 674 (933)
.++|+..+.||+|+||.||+|.+. +++.||||++.... ....+++.+|++++++++||||+++++++...+..++|||
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 93 (303)
T 2vwi_A 14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMK 93 (303)
T ss_dssp CCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEE
T ss_pred hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEeh
Confidence 468999999999999999999965 57899999986543 3345678899999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcC-----CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccc
Q 002349 675 FMENGSLWDILHG-----PTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKS 749 (933)
Q Consensus 675 ~~~~gsL~~~l~~-----~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~ 749 (933)
|+++++|.+++.. ......+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 94 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~ 170 (303)
T 2vwi_A 94 LLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGVSAF 170 (303)
T ss_dssp CCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCHHHHH
T ss_pred hccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEEeccchhe
Confidence 9999999999852 11345699999999999999999999976 999999999999999999999999999976
Q ss_pred cccCCC----ceeeeecccccccCcccccc-CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccc-
Q 002349 750 LCVSKS----YTSTYIMGTIGYIDPEYART-SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMET- 823 (933)
Q Consensus 750 ~~~~~~----~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~- 823 (933)
...... .......||+.|+|||++.+ ..++.++||||+|+++|+|++|+.||......................
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~ 250 (303)
T 2vwi_A 171 LATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETG 250 (303)
T ss_dssp CC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC-
T ss_pred eccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCccccc
Confidence 543211 11234579999999999876 568999999999999999999999998655444332221111110000
Q ss_pred -cCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 824 -VDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 824 -~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
.++.... ..+..+.+++.+||+.||++|||+++++++
T Consensus 251 ~~~~~~~~-----~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 288 (303)
T 2vwi_A 251 VQDKEMLK-----KYGKSFRKMISLCLQKDPEKRPTAAELLRH 288 (303)
T ss_dssp ----CCCC-----CCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred cccchhhh-----hhhHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 0011111 123578899999999999999999999875
No 246
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=1.8e-37 Score=341.25 Aligned_cols=253 Identities=26% Similarity=0.351 Sum_probs=197.8
Q ss_pred HhhccCcceeeecccceeEEEEEEcC-CceEEEEEecccC--------chhHHHHHHHHHHHhcCCCCceeeeeeEEecC
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY--------PQCLKEFETELETVGSIKHRNLVSLQGYSLSS 666 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 666 (933)
..++|...+.||+|+||.||+|.+.. ++.||||++.... ......+.+|++++++++||||+++++++..+
T Consensus 8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~ 87 (322)
T 2ycf_A 8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE 87 (322)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS
T ss_pred hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC
Confidence 45789999999999999999999764 7899999986532 12234588999999999999999999998765
Q ss_pred CccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCC---eEEee
Q 002349 667 SGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFE---AHLTD 743 (933)
Q Consensus 667 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~---~kl~D 743 (933)
. .++||||+++++|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++. +||+|
T Consensus 88 ~-~~lv~e~~~~~~L~~~~~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~D 160 (322)
T 2ycf_A 88 D-YYIVLELMEGGELFDKVV---GNKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITD 160 (322)
T ss_dssp S-EEEEEECCTTEETHHHHS---TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEECC
T ss_pred c-eEEEEecCCCCcHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEcc
Confidence 5 899999999999999994 456799999999999999999999976 9999999999999987654 99999
Q ss_pred cccccccccCCCceeeeecccccccCccccc---cCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccc
Q 002349 744 FGIAKSLCVSKSYTSTYIMGTIGYIDPEYAR---TSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAV 820 (933)
Q Consensus 744 fGla~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~ 820 (933)
||+++..... .......||+.|+|||++. +..++.++|||||||++|+|++|+.||............... ...
T Consensus 161 fg~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~-~~~ 237 (322)
T 2ycf_A 161 FGHSKILGET--SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITS-GKY 237 (322)
T ss_dssp CTTCEECCCC--HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHH-TCC
T ss_pred Cccceecccc--cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHh-Ccc
Confidence 9999875322 2223456999999999874 467899999999999999999999999754332221111110 000
Q ss_pred ccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 821 METVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
...+.... ..+..+.+++.+|++.||++|||+++++++
T Consensus 238 --~~~~~~~~-----~~~~~~~~li~~~l~~dP~~Rps~~~~l~h 275 (322)
T 2ycf_A 238 --NFIPEVWA-----EVSEKALDLVKKLLVVDPKARFTTEEALRH 275 (322)
T ss_dssp --CCCHHHHT-----TSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred --ccCchhhh-----hcCHHHHHHHHHHcccCHhhCCCHHHHhhC
Confidence 00111111 123578899999999999999999999863
No 247
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-37 Score=351.42 Aligned_cols=374 Identities=17% Similarity=0.170 Sum_probs=228.2
Q ss_pred cCCCCCCCCCCCC-CccceEecCCCCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCC-CccCCCCCcee
Q 002349 44 LYDWTDSPSSDYC-VWRGITCDNVTFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPD-EIGDCSSLKSL 121 (933)
Q Consensus 44 l~~w~~~~~~~~c-~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L 121 (933)
+++|... .+|| .|.+..|.-...++ ............-..++++++|++++|.++. +|. .|.++++|++|
T Consensus 3 ~~~~~~~--~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L 74 (390)
T 3o6n_A 3 VKPRQPE--YKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELL 74 (390)
T ss_dssp ----CCE--ECBCC------EEEESCEE-----CSSCCCCEESCSSGGGCCCSEEEEESCEESE-ECTHHHHHCCCCSEE
T ss_pred cCCCCCc--cceehhhhhhccceeeeee-----ecccccccccccccccCCceEEEecCCchhh-CChhHhcccccCcEE
Confidence 5778643 4555 46666553222121 2212222222233456788889998888884 554 46888888888
Q ss_pred cccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCcccc
Q 002349 122 DLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLT 201 (933)
Q Consensus 122 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 201 (933)
+|++|.+++..|..|..+++|++|+|++|.+++..|..|+++++|++|+|++|+++...+..|.++++|++|++++|.++
T Consensus 75 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 154 (390)
T 3o6n_A 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154 (390)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC
Confidence 88888888666677888888888888888888777777888888888888888887444444567777777777777777
Q ss_pred CccCcCCcCCCCCcEEccccccccCcCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCC
Q 002349 202 GSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGN 281 (933)
Q Consensus 202 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 281 (933)
+..|..+.++++|++|++++|++++. .++.+++|+.|++++|.+++
T Consensus 155 ~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------------~~~~l~~L~~L~l~~n~l~~-------- 200 (390)
T 3o6n_A 155 RIEDDTFQATTSLQNLQLSSNRLTHV--------------------------DLSLIPSLFHANVSYNLLST-------- 200 (390)
T ss_dssp BCCTTTTSSCTTCCEEECCSSCCSBC--------------------------CGGGCTTCSEEECCSSCCSE--------
T ss_pred ccChhhccCCCCCCEEECCCCcCCcc--------------------------ccccccccceeecccccccc--------
Confidence 66666667777777777666665521 02233445555555554432
Q ss_pred CCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCcee
Q 002349 282 LSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLN 361 (933)
Q Consensus 282 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 361 (933)
+...++|+.|++++|.++.. |.. .. ++|+.|+
T Consensus 201 ---------------------~~~~~~L~~L~l~~n~l~~~-~~~--~~------------------------~~L~~L~ 232 (390)
T 3o6n_A 201 ---------------------LAIPIAVEELDASHNSINVV-RGP--VN------------------------VELTILK 232 (390)
T ss_dssp ---------------------EECCSSCSEEECCSSCCCEE-ECC--CC------------------------SSCCEEE
T ss_pred ---------------------cCCCCcceEEECCCCeeeec-ccc--cc------------------------ccccEEE
Confidence 11123455555555555422 111 11 2344444
Q ss_pred ccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCccccc
Q 002349 362 VHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTG 441 (933)
Q Consensus 362 l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 441 (933)
+++|++++. ..+..+++|++|++++|.+++..|..+..+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++
T Consensus 233 l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~- 308 (390)
T 3o6n_A 233 LQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL- 308 (390)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-
T ss_pred CCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-
Confidence 444444432 345555566666666666665556666666666666666666663 4555667777888888888877
Q ss_pred ccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcccchhhccccc-eeecCCCCCCCccc
Q 002349 442 FIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSLINCLSLS-VLFIGNPGLCGYWL 515 (933)
Q Consensus 442 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~-~~~~~N~~~C~~~l 515 (933)
.+|..+..+++|++|+|++|++++. | +..+++|+.|++++|+|+|..... -+..+. ..+.+++..|.++.
T Consensus 309 ~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~c~~~~ 379 (390)
T 3o6n_A 309 HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKIDY 379 (390)
T ss_dssp CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCSCCCTTC
T ss_pred ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHHH-HHHHHHhhcccccCceecccc
Confidence 4566677888888888888888754 3 667788888888888888754321 112222 45677888888654
No 248
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=1.3e-37 Score=348.09 Aligned_cols=270 Identities=20% Similarity=0.216 Sum_probs=194.7
Q ss_pred HHHHHHhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecCCc-
Q 002349 591 EDIMRMTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSSSG- 668 (933)
Q Consensus 591 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~- 668 (933)
+......++|+..+.||+|+||.||+|.+. +++.||||++.... .....+.+|++.++.++||||+++++++.....
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 556777899999999999999999999986 57899999986543 234456778888999999999999999865433
Q ss_pred ------cEEEEEecCCCCHHHHhc-CCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCC-CCCeE
Q 002349 669 ------NLLFYDFMENGSLWDILH-GPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDK-DFEAH 740 (933)
Q Consensus 669 ------~~lv~e~~~~gsL~~~l~-~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~-~~~~k 740 (933)
.++||||++++ |.+.+. .......+++..+..++.|++.||.|||.+ +.+|+||||||+||+++. ++.+|
T Consensus 95 ~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~~~ivH~Dlkp~NIll~~~~~~~k 172 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPDT-LHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLP-SVNVCHRDIKPHNVLVNEADGTLK 172 (360)
T ss_dssp CTTCEEEEEEEECCSCB-HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTST-TTCCBCSCCCGGGEEEETTTTEEE
T ss_pred cccceeEEEEeeccccc-HHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCC-CCCeecCcCCHHHEEEeCCCCcEE
Confidence 78999999874 444332 113456789999999999999999999933 349999999999999997 89999
Q ss_pred EeecccccccccCCCceeeeecccccccCccccccCC-CCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccc
Q 002349 741 LTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSR-LTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNA 819 (933)
Q Consensus 741 l~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~ 819 (933)
|+|||+++...... ......||+.|+|||++.+.. ++.++|||||||++|+|++|+.||.+................
T Consensus 173 l~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~ 250 (360)
T 3e3p_A 173 LCDFGSAKKLSPSE--PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGC 250 (360)
T ss_dssp ECCCTTCBCCCTTS--CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCC
T ss_pred EeeCCCceecCCCC--CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCC
Confidence 99999998764322 223457899999999987654 899999999999999999999999876655444332211111
Q ss_pred ccc----ccCcc-------------cccc--ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 820 VME----TVDPE-------------ISAT--CKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 820 ~~~----~~~~~-------------~~~~--~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
... ...+. .... ......+..+.+++.+||+.||++|||++|++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 315 (360)
T 3e3p_A 251 PSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCH 315 (360)
T ss_dssp CCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred CCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcC
Confidence 000 00000 0000 0011135689999999999999999999999975
No 249
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=2.5e-38 Score=351.00 Aligned_cols=255 Identities=25% Similarity=0.320 Sum_probs=199.7
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC-chhHHHHHHHHHH-HhcCCCCceeeeeeEEecCCccEEE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY-PQCLKEFETELET-VGSIKHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~-l~~l~h~niv~~~~~~~~~~~~~lv 672 (933)
..++|+..+.||+|+||.||+|.+. +++.||||++.... .....++..|..+ ++.++||||+++++++...+..++|
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 128 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 128 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEE
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEE
Confidence 3468888999999999999999974 68899999997643 3334555566655 7888999999999999999999999
Q ss_pred EEecCCCCHHHHhcCC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccc
Q 002349 673 YDFMENGSLWDILHGP-TKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLC 751 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~ 751 (933)
|||+++ +|.+++... .....+++..+..++.|++.||+|||++ .+|+||||||+||+++.++.+||+|||+++...
T Consensus 129 ~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~--~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 205 (340)
T 3an0_A 129 MELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDFGISGYLV 205 (340)
T ss_dssp ECCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHH--TCCCCCSCCSTTEEECSTTCEEECCCSHHHHHS
T ss_pred HHHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeeCCCceecc
Confidence 999975 998887421 1356799999999999999999999952 289999999999999999999999999998763
Q ss_pred cCCCceeeeecccccccCcccccc----CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcc
Q 002349 752 VSKSYTSTYIMGTIGYIDPEYART----SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPE 827 (933)
Q Consensus 752 ~~~~~~~~~~~gt~~y~aPE~~~~----~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (933)
.. .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||................. .+.
T Consensus 206 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~------~~~ 277 (340)
T 3an0_A 206 DS--VAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEP------SPQ 277 (340)
T ss_dssp CH--HHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSC------CCC
T ss_pred cc--cccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchHHHHHHHhcCC------CCC
Confidence 22 12223479999999999653 4789999999999999999999999986433222221111111 111
Q ss_pred ccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 828 ISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 828 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
... ...+..+.+++.+||+.||++|||+.|++++
T Consensus 278 ~~~----~~~~~~~~~li~~~l~~dp~~Rps~~ell~h 311 (340)
T 3an0_A 278 LPA----DKFSAEFVDFTSQCLKKNSKERPTYPELMQH 311 (340)
T ss_dssp CCG----GGSCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred CCc----ccCCHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 110 1124578899999999999999999999873
No 250
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=1.1e-37 Score=355.83 Aligned_cols=260 Identities=20% Similarity=0.233 Sum_probs=203.5
Q ss_pred hhccCcceeeecccceeEEEEEEcC-CceEEEEEecccCchhHHHHHHHHHHHhcC------CCCceeeeeeEEecCCcc
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHYPQCLKEFETELETVGSI------KHRNLVSLQGYSLSSSGN 669 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~~~~~~ 669 (933)
..+|+..+.||+|+||+||+|.+.. ++.||||++... ....+.+.+|+++++.+ +|+||+++++++......
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 174 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI 174 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence 3579999999999999999999764 789999999754 23346677888888877 577999999999999999
Q ss_pred EEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCC--eEEeecccc
Q 002349 670 LLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFE--AHLTDFGIA 747 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~--~kl~DfGla 747 (933)
++||||+. ++|.+++.. .....+++..+..++.|++.||+|||++ +|+||||||+|||++.++. +||+|||+|
T Consensus 175 ~lv~e~~~-~~L~~~l~~-~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DFG~a 249 (429)
T 3kvw_A 175 CMTFELLS-MNLYELIKK-NKFQGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDFGSS 249 (429)
T ss_dssp EEEECCCC-CBHHHHHHH-TTTCCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred EEEEeccC-CCHHHHHHh-ccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeecccc
Confidence 99999996 689998864 2334599999999999999999999976 9999999999999999987 999999999
Q ss_pred cccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccccccc---
Q 002349 748 KSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETV--- 824 (933)
Q Consensus 748 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~--- 824 (933)
+..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.+..............+.....+
T Consensus 250 ~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~~~l~~i~~~~~~p~~~~~~~ 325 (429)
T 3kvw_A 250 CYEHQR----VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLDA 325 (429)
T ss_dssp EETTCC----CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHT
T ss_pred eecCCc----ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHh
Confidence 764322 2335799999999999999999999999999999999999999987665544432221110000000
Q ss_pred --------C----c-----------------------ccc--ccccCH------HHHHHHHHHHHHccCCCCCCCCCHHH
Q 002349 825 --------D----P-----------------------EIS--ATCKDL------GAVKKVFQLALLCSKRQPTDRPTMHE 861 (933)
Q Consensus 825 --------~----~-----------------------~~~--~~~~~~------~~~~~l~~li~~cl~~dP~~RPt~~e 861 (933)
+ + ... ...... .....+.+++.+||+.||++|||++|
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rpta~e 405 (429)
T 3kvw_A 326 SKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQ 405 (429)
T ss_dssp BTTHHHHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred hhhhhhccCCCCCcccccccccccccccccccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCCCHHH
Confidence 0 0 000 000000 01356889999999999999999999
Q ss_pred HHHHH
Q 002349 862 VSRVL 866 (933)
Q Consensus 862 vl~~L 866 (933)
++++-
T Consensus 406 ~L~Hp 410 (429)
T 3kvw_A 406 ALRHP 410 (429)
T ss_dssp HHTST
T ss_pred HhCCh
Confidence 99854
No 251
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=1.3e-37 Score=337.08 Aligned_cols=254 Identities=22% Similarity=0.287 Sum_probs=188.2
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCc--hhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYP--QCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
.++|+..+.||+|+||+||+|.+. +++.||||++..... ...+.+.++...++.++||||+++++++..++..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 468999999999999999999975 678999999976532 22334455666688889999999999999999999999
Q ss_pred EecCCCCHHHHhcCC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 674 DFMENGSLWDILHGP-TKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 674 e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
||+++ +|.+++... .....+++..+..++.|++.||+|||++ .+|+||||||+||+++.++.+||+|||+++....
T Consensus 86 e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 162 (290)
T 3fme_A 86 ELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDFGISGYLVD 162 (290)
T ss_dssp ECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH--SCCCCCCCSGGGCEECTTCCEEBCCC--------
T ss_pred ehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeecCCcccccc
Confidence 99974 887776421 2356799999999999999999999952 2899999999999999999999999999987543
Q ss_pred CCCceeeeecccccccCcccc----ccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccc
Q 002349 753 SKSYTSTYIMGTIGYIDPEYA----RTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEI 828 (933)
Q Consensus 753 ~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (933)
. .......||+.|+|||++ .+..++.++||||+|+++|+|++|+.||.................. +..
T Consensus 163 ~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~------~~~ 234 (290)
T 3fme_A 163 D--VAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPS------PQL 234 (290)
T ss_dssp ---------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCC------CCC
T ss_pred c--ccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCC------CCc
Confidence 2 222334799999999996 5567899999999999999999999999853332222221111111 111
Q ss_pred cccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 829 SATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 829 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
. ....+..+.+++.+|++.||++|||++|++++
T Consensus 235 ~----~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~h 267 (290)
T 3fme_A 235 P----ADKFSAEFVDFTSQCLKKNSKERPTYPELMQH 267 (290)
T ss_dssp C----TTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred c----cccCCHHHHHHHHHHhhcChhhCcCHHHHHhC
Confidence 1 01123578899999999999999999999873
No 252
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=350.26 Aligned_cols=266 Identities=22% Similarity=0.280 Sum_probs=185.0
Q ss_pred hhccCc-ceeeecccceeEEEEEEc---CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEe--cCCccE
Q 002349 597 TENLSE-KYIIGYGASSTVYKCVLK---NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSL--SSSGNL 670 (933)
Q Consensus 597 ~~~~~~-~~~lG~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~--~~~~~~ 670 (933)
.+.|.. +++||+|+||+||+|+++ .++.||||++.... ....+.+|++++++++||||+++++++. .....+
T Consensus 19 ~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 96 (405)
T 3rgf_A 19 EDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVW 96 (405)
T ss_dssp HHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEE
T ss_pred hhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEE
Confidence 345665 458999999999999976 46889999997543 2357889999999999999999999995 467789
Q ss_pred EEEEecCCCCHHHHhcCC------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEe----CCCCCeE
Q 002349 671 LFYDFMENGSLWDILHGP------TKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILL----DKDFEAH 740 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll----~~~~~~k 740 (933)
+||||+++ +|.+++... .....+++..+..++.|++.||+|||++ +|+||||||+|||+ +.++.+|
T Consensus 97 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~k 172 (405)
T 3rgf_A 97 LLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVK 172 (405)
T ss_dssp EEEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTCEE
T ss_pred EEEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCcEE
Confidence 99999974 788777411 1233599999999999999999999966 99999999999999 6779999
Q ss_pred EeecccccccccCCC--ceeeeecccccccCccccccC-CCCcchhhHHHHHHHHHHHhCCCCCCCCcch---------h
Q 002349 741 LTDFGIAKSLCVSKS--YTSTYIMGTIGYIDPEYARTS-RLTEKSDVYSFGIVLLELLTGRKAVDNECNL---------H 808 (933)
Q Consensus 741 l~DfGla~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGv~l~elltg~~p~~~~~~~---------~ 808 (933)
|+|||+|+....... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||.+.... .
T Consensus 173 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~ 252 (405)
T 3rgf_A 173 IADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHD 252 (405)
T ss_dssp ECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHH
T ss_pred EEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHH
Confidence 999999987643211 223446799999999999874 5899999999999999999999999754321 1
Q ss_pred HHHHhhhcccccccccCcccccc-----------------cc--------CHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 002349 809 HLILSKTANNAVMETVDPEISAT-----------------CK--------DLGAVKKVFQLALLCSKRQPTDRPTMHEVS 863 (933)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--------~~~~~~~l~~li~~cl~~dP~~RPt~~evl 863 (933)
.+.......+.......+.+... .. .......+.+++.+||+.||++|||++|++
T Consensus 253 ~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L 332 (405)
T 3rgf_A 253 QLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAM 332 (405)
T ss_dssp HHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred HHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHh
Confidence 11111110000000000000000 00 000134678999999999999999999999
Q ss_pred HHHcc
Q 002349 864 RVLGS 868 (933)
Q Consensus 864 ~~L~~ 868 (933)
++-.-
T Consensus 333 ~hp~f 337 (405)
T 3rgf_A 333 QDPYF 337 (405)
T ss_dssp TSGGG
T ss_pred cChhh
Confidence 86543
No 253
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=2.3e-37 Score=346.39 Aligned_cols=260 Identities=22% Similarity=0.271 Sum_probs=204.1
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecC-----Ccc
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSS-----SGN 669 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-----~~~ 669 (933)
.++|+..+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 458999999999999999999976 57889999997543 33457789999999999999999999999765 357
Q ss_pred EEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccc
Q 002349 670 LLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKS 749 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~ 749 (933)
++||||++ |+|.+++. ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 106 ~iv~e~~~-~~L~~~l~----~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~ 177 (364)
T 3qyz_A 106 YIVQDLME-TDLYKLLK----TQHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARV 177 (364)
T ss_dssp EEEEECCS-EEHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEcccC-cCHHHHHH----hCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcceEe
Confidence 99999997 59999985 34699999999999999999999966 999999999999999999999999999987
Q ss_pred cccCCCce--eeeecccccccCcccccc-CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccc---
Q 002349 750 LCVSKSYT--STYIMGTIGYIDPEYART-SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMET--- 823 (933)
Q Consensus 750 ~~~~~~~~--~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~--- 823 (933)
........ .....||+.|+|||++.+ ..++.++||||+||++|+|++|+.||.+..............+.....
T Consensus 178 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~ 257 (364)
T 3qyz_A 178 ADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLN 257 (364)
T ss_dssp CCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHH
T ss_pred cCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHH
Confidence 64332221 234579999999998754 558999999999999999999999998766555443322111110000
Q ss_pred -------------cC----ccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 824 -------------VD----PEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 824 -------------~~----~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
.. ....... ......+.+++.+|++.||++|||++|++++-
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp 315 (364)
T 3qyz_A 258 CIINLKARNYLLSLPHKNKVPWNRLF--PNADSKALDLLDKMLTFNPHKRIEVEQALAHP 315 (364)
T ss_dssp TCCCHHHHHHHHTSCCCCCCCHHHHC--TTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSG
T ss_pred HhhhhhHHHHHHhcCCccCCCHHHhC--CCCCHHHHHHHHHHcCCChhhCCCHHHHhcCc
Confidence 00 0000000 01235788999999999999999999999753
No 254
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=341.11 Aligned_cols=260 Identities=22% Similarity=0.317 Sum_probs=196.9
Q ss_pred hccCcceeeecccceeEEEEEEcC-CceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEe------------
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSL------------ 664 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~------------ 664 (933)
++|...+.||+|+||.||+|.+.. ++.||+|++........+.+.+|++++++++||||+++++++.
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~ 90 (320)
T 2i6l_A 11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGS 90 (320)
T ss_dssp TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----
T ss_pred CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccccc
Confidence 578999999999999999999875 7899999998776667788999999999999999999999874
Q ss_pred --cCCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeC-CCCCeEE
Q 002349 665 --SSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLD-KDFEAHL 741 (933)
Q Consensus 665 --~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~-~~~~~kl 741 (933)
.....++||||++ |+|.+++. .+++++..+..++.|++.||+|||++ +|+||||||+||+++ .++.+||
T Consensus 91 ~~~~~~~~lv~e~~~-~~L~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl 162 (320)
T 2i6l_A 91 LTELNSVYIVQEYME-TDLANVLE----QGPLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVLKI 162 (320)
T ss_dssp CCSCSEEEEEEECCS-EEHHHHHT----TCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEEEE
T ss_pred ccccCceeEEeeccC-CCHHHHhh----cCCccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeEEE
Confidence 3456799999997 59999984 35689999999999999999999976 999999999999997 5679999
Q ss_pred eecccccccccCCC--ceeeeecccccccCcccccc-CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccc
Q 002349 742 TDFGIAKSLCVSKS--YTSTYIMGTIGYIDPEYART-SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANN 818 (933)
Q Consensus 742 ~DfGla~~~~~~~~--~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 818 (933)
+|||+++....... .......+|..|+|||.+.+ ..++.++||||||+++|||++|+.||.+...............
T Consensus 163 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~ 242 (320)
T 2i6l_A 163 GDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIP 242 (320)
T ss_dssp CCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSC
T ss_pred ccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcC
Confidence 99999987532211 11233467899999998865 6789999999999999999999999987665444332211111
Q ss_pred ccccc--------cC----ccccccccC-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 819 AVMET--------VD----PEISATCKD-----LGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 819 ~~~~~--------~~----~~~~~~~~~-----~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..... .. ......... ...+..+.+++.+|++.||++|||++|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 306 (320)
T 2i6l_A 243 VVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSH 306 (320)
T ss_dssp CCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred CCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence 00000 00 000000000 0124678999999999999999999999874
No 255
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.5e-37 Score=350.28 Aligned_cols=262 Identities=21% Similarity=0.251 Sum_probs=198.5
Q ss_pred HHHhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecC------
Q 002349 594 MRMTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSS------ 666 (933)
Q Consensus 594 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~------ 666 (933)
....++|+..+.||+|+||+||+|.+. +++.||||++..... ...+|+++++.++|||||++++++...
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~ 78 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK 78 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence 345678999999999999999999974 588999999865432 234799999999999999999998443
Q ss_pred --------------------------------CccEEEEEecCCCCHHHHhcCC-CCCCCCCHHHHHHHHHHHHHHHHHh
Q 002349 667 --------------------------------SGNLLFYDFMENGSLWDILHGP-TKKKKLDWDTRLKIALGAAQGLAYL 713 (933)
Q Consensus 667 --------------------------------~~~~lv~e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~L 713 (933)
...++||||+++ +|.+.+... .....+++..+..++.|+++||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~L 157 (383)
T 3eb0_A 79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFI 157 (383)
T ss_dssp -------------------------------CCEEEEEECCCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEEEecCCc-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 337899999984 777766421 2356799999999999999999999
Q ss_pred hcCCCCCeeeccCCCCceEeC-CCCCeEEeecccccccccCCCceeeeecccccccCccccccC-CCCcchhhHHHHHHH
Q 002349 714 HHDCSPRIIHRDVKSSNILLD-KDFEAHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTS-RLTEKSDVYSFGIVL 791 (933)
Q Consensus 714 H~~~~~~ivH~Dikp~NIll~-~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGv~l 791 (933)
|++ +|+||||||+||+++ .++.+||+|||+|+...... ......||+.|+|||++.+. .++.++||||+||++
T Consensus 158 H~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il 232 (383)
T 3eb0_A 158 HSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE--PSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVF 232 (383)
T ss_dssp HTT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS--CCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHH
T ss_pred HHC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC--CCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHH
Confidence 955 999999999999998 68899999999998764322 23345789999999998875 489999999999999
Q ss_pred HHHHhCCCCCCCCcchhHHHHhhhccccc------------ccccCccccccc----cCHHHHHHHHHHHHHccCCCCCC
Q 002349 792 LELLTGRKAVDNECNLHHLILSKTANNAV------------METVDPEISATC----KDLGAVKKVFQLALLCSKRQPTD 855 (933)
Q Consensus 792 ~elltg~~p~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~----~~~~~~~~l~~li~~cl~~dP~~ 855 (933)
|||++|+.||.+......+.......+.. .+...+...... .....+..+.+++.+||+.||++
T Consensus 233 ~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~ 312 (383)
T 3eb0_A 233 GELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDL 312 (383)
T ss_dssp HHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGG
T ss_pred HHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhh
Confidence 99999999999776665554332211110 000000000000 00112457889999999999999
Q ss_pred CCCHHHHHHH
Q 002349 856 RPTMHEVSRV 865 (933)
Q Consensus 856 RPt~~evl~~ 865 (933)
|||+.|++++
T Consensus 313 R~t~~e~l~h 322 (383)
T 3eb0_A 313 RINPYEAMAH 322 (383)
T ss_dssp SCCHHHHHTS
T ss_pred CCCHHHHhcC
Confidence 9999999863
No 256
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=2e-37 Score=342.23 Aligned_cols=254 Identities=17% Similarity=0.224 Sum_probs=199.3
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCC-CCceeeeeeEEec--CCccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIK-HRNLVSLQGYSLS--SSGNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~--~~~~~lv~ 673 (933)
++|+..+.||+|+||+||+|.+. +++.||||++... ..+.+.+|++++++++ ||||+++++++.. ....++||
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~ 112 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF 112 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEE
Confidence 68999999999999999999964 5789999998743 3567899999999997 9999999999987 56789999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCC-CeEEeeccccccccc
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDF-EAHLTDFGIAKSLCV 752 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~-~~kl~DfGla~~~~~ 752 (933)
||+++++|.+++. .+++..+..++.|++.||+|||++ +|+||||||+||+++.++ .+||+|||+++....
T Consensus 113 e~~~~~~l~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~ 183 (330)
T 3nsz_A 113 EHVNNTDFKQLYQ------TLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP 183 (330)
T ss_dssp ECCCCCCHHHHGG------GCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred eccCchhHHHHHH------hCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCC
Confidence 9999999999984 388999999999999999999966 999999999999999776 899999999987643
Q ss_pred CCCceeeeecccccccCcccccc-CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcc-c--ccc-------
Q 002349 753 SKSYTSTYIMGTIGYIDPEYART-SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTAN-N--AVM------- 821 (933)
Q Consensus 753 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~-~--~~~------- 821 (933)
... .....|+..|+|||++.+ ..++.++||||+||++|+|++|+.||................ + ...
T Consensus 184 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 261 (330)
T 3nsz_A 184 GQE--YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYN 261 (330)
T ss_dssp TCC--CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred CCc--cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhc
Confidence 322 234578999999999887 678999999999999999999999996433322211110000 0 000
Q ss_pred cccCcc---------------ccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 822 ETVDPE---------------ISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 822 ~~~~~~---------------~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
...++. ..........+..+.+++.+|++.||++|||++|++++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~h 320 (330)
T 3nsz_A 262 IELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH 320 (330)
T ss_dssp CCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred cccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence 000000 00000001124678999999999999999999999975
No 257
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=4.1e-37 Score=340.96 Aligned_cols=258 Identities=19% Similarity=0.267 Sum_probs=204.4
Q ss_pred hccCcceeeecccceeEEEEEE-c-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCC------ceeeeeeEEecCCcc
Q 002349 598 ENLSEKYIIGYGASSTVYKCVL-K-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHR------NLVSLQGYSLSSSGN 669 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~-~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~------niv~~~~~~~~~~~~ 669 (933)
++|+..+.||+|+||+||+|.+ + +++.||||++... ....+.+.+|+++++.++|+ +++++++++...+..
T Consensus 14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~ 92 (339)
T 1z57_A 14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHI 92 (339)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEE
T ss_pred CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcE
Confidence 5899999999999999999997 3 5788999998654 33456788999999988665 499999999999999
Q ss_pred EEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCC--------------
Q 002349 670 LLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDK-------------- 735 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~-------------- 735 (933)
++||||+ +++|.+++.. ....++++..+..++.|++.||+|||++ +|+||||||+||+++.
T Consensus 93 ~lv~e~~-~~~l~~~l~~-~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~ 167 (339)
T 1z57_A 93 CIVFELL-GLSTYDFIKE-NGFLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPKIKRD 167 (339)
T ss_dssp EEEEECC-CCBHHHHHHH-TTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC----CE
T ss_pred EEEEcCC-CCCHHHHHHh-cCCCCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCccccc
Confidence 9999999 8899999863 2234689999999999999999999976 9999999999999987
Q ss_pred -----CCCeEEeecccccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHH
Q 002349 736 -----DFEAHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHL 810 (933)
Q Consensus 736 -----~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~ 810 (933)
++.+||+|||+++..... .....||+.|+|||++.+..++.++||||+||++|||++|+.||.........
T Consensus 168 ~~~~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~ 243 (339)
T 1z57_A 168 ERTLINPDIKVVDFGSATYDDEH----HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHL 243 (339)
T ss_dssp EEEESCCCEEECCCSSCEETTSC----CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHH
T ss_pred cccccCCCceEeeCcccccCccc----cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHH
Confidence 678999999999864322 23457999999999999999999999999999999999999999866554433
Q ss_pred HHhhhcccccccc-------------------------------cCccccccccCHHHHHHHHHHHHHccCCCCCCCCCH
Q 002349 811 ILSKTANNAVMET-------------------------------VDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTM 859 (933)
Q Consensus 811 ~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~ 859 (933)
............. ..+...........+..+.+++.+|++.||++|||+
T Consensus 244 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~ 323 (339)
T 1z57_A 244 AMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITL 323 (339)
T ss_dssp HHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCH
T ss_pred HHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCH
Confidence 2221111111000 000000011122456789999999999999999999
Q ss_pred HHHHHH
Q 002349 860 HEVSRV 865 (933)
Q Consensus 860 ~evl~~ 865 (933)
+|++++
T Consensus 324 ~ell~h 329 (339)
T 1z57_A 324 REALKH 329 (339)
T ss_dssp HHHTTS
T ss_pred HHHhcC
Confidence 999864
No 258
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=1.9e-37 Score=371.16 Aligned_cols=256 Identities=24% Similarity=0.343 Sum_probs=205.7
Q ss_pred HhhccCcceeeecccceeEEEEEEcC----CceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccE
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLKN----CKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNL 670 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 670 (933)
..++|+..+.||+|+||.||+|.+.. +..||+|++.... ....+.+.+|+.++++++||||+++++++. ++..+
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~ 466 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW 466 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCE
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceE
Confidence 35788899999999999999999753 4579999987643 344577999999999999999999999985 45689
Q ss_pred EEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccc
Q 002349 671 LFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSL 750 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~ 750 (933)
+||||+++|+|.++++. ....+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+++..
T Consensus 467 lv~E~~~~g~L~~~l~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~a~~~ 541 (656)
T 2j0j_A 467 IIMELCTLGELRSFLQV--RKFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYM 541 (656)
T ss_dssp EEEECCTTCBHHHHHHH--TTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCCCCSC
T ss_pred EEEEcCCCCcHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCCCeec
Confidence 99999999999999963 345689999999999999999999976 9999999999999999999999999999876
Q ss_pred ccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccCcccc
Q 002349 751 CVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVDPEIS 829 (933)
Q Consensus 751 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (933)
............+|+.|+|||++.+..++.++|||||||++|||++ |..||.+.............. ....+
T Consensus 542 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~~-------~~~~~ 614 (656)
T 2j0j_A 542 EDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGE-------RLPMP 614 (656)
T ss_dssp CC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHTC-------CCCCC
T ss_pred CCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCC-------CCCCC
Confidence 5444333444567889999999999999999999999999999997 999998655443332221111 01111
Q ss_pred ccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccC
Q 002349 830 ATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSL 869 (933)
Q Consensus 830 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~ 869 (933)
. ..+..+.+++.+||+.||++|||+.++++.|+.+
T Consensus 615 ~-----~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~i 649 (656)
T 2j0j_A 615 P-----NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 649 (656)
T ss_dssp T-----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred c-----cccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 1 1245788999999999999999999999998765
No 259
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=4.6e-37 Score=332.15 Aligned_cols=254 Identities=24% Similarity=0.329 Sum_probs=205.7
Q ss_pred HHHhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccE
Q 002349 594 MRMTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNL 670 (933)
Q Consensus 594 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 670 (933)
....++|+..+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++...+..+
T Consensus 18 ~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~ 97 (287)
T 2wei_A 18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFY 97 (287)
T ss_dssp HHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred HHHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEE
Confidence 345679999999999999999999986 57899999986543 345678999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCC---CCeEEeecccc
Q 002349 671 LFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKD---FEAHLTDFGIA 747 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~---~~~kl~DfGla 747 (933)
+||||+++++|.+.+. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.+ +.+||+|||++
T Consensus 98 lv~e~~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~ 171 (287)
T 2wei_A 98 IVGELYTGGELFDEII---KRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLS 171 (287)
T ss_dssp EEECCCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGG
T ss_pred EEEEccCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCcc
Confidence 9999999999999884 345789999999999999999999966 99999999999999754 47999999999
Q ss_pred cccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcc
Q 002349 748 KSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPE 827 (933)
Q Consensus 748 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (933)
....... ......||+.|+|||.+.+. ++.++||||+|+++|+|++|+.||.+.................. .+.
T Consensus 172 ~~~~~~~--~~~~~~~~~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~---~~~ 245 (287)
T 2wei_A 172 TCFQQNT--KMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFD---LPQ 245 (287)
T ss_dssp GTBCCCS--SCSCHHHHHTTCCHHHHTTC-CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCC---SGG
T ss_pred eeecCCC--ccccccCcccccChHHhcCC-CCCchhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCC---chh
Confidence 8654322 22334689999999998764 89999999999999999999999987554433222211111100 000
Q ss_pred ccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 828 ISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 828 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
. ...+..+.+++.+|++.||++|||++|++++
T Consensus 246 ~------~~~~~~~~~li~~~l~~dp~~Rps~~ell~h 277 (287)
T 2wei_A 246 W------RTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (287)
T ss_dssp G------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred h------hhcCHHHHHHHHHHcccChhhCcCHHHHhcC
Confidence 0 0123578899999999999999999999973
No 260
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=7.6e-37 Score=342.88 Aligned_cols=255 Identities=22% Similarity=0.273 Sum_probs=200.4
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCcc----
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGN---- 669 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~---- 669 (933)
.++|...+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+.++++++||||+++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 458889999999999999999976 57899999997643 33457788999999999999999999999877655
Q ss_pred --EEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccc
Q 002349 670 --LLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIA 747 (933)
Q Consensus 670 --~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla 747 (933)
++||||++ ++|.+.+. ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 121 ~~~lv~e~~~-~~l~~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~a 191 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMG-----MEFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLA 191 (371)
T ss_dssp CCEEEEECCC-EEHHHHTT-----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTCC
T ss_pred eEEEEEcccc-ccHHHHhh-----cCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCcc
Confidence 99999997 58988873 3489999999999999999999976 9999999999999999999999999999
Q ss_pred cccccCCCceeeeecccccccCcccccc-CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccccccc--
Q 002349 748 KSLCVSKSYTSTYIMGTIGYIDPEYART-SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETV-- 824 (933)
Q Consensus 748 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~-- 824 (933)
+.... ......||+.|+|||++.+ ..++.++||||+||++|+|++|+.||.+..............+......
T Consensus 192 ~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~ 267 (371)
T 4exu_A 192 RHADA----EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQ 267 (371)
T ss_dssp ------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHT
T ss_pred ccccc----CcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHH
Confidence 86532 2234578999999999987 6789999999999999999999999987665544433222111110000
Q ss_pred ------------------CccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 825 ------------------DPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 825 ------------------~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
........ ...+..+.+++.+|++.||++|||++|++++-
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp 325 (371)
T 4exu_A 268 KLNDKAAKSYIQSLPQTPRKDFTQLF--PRASPQAADLLEKMLELDVDKRLTAAQALTHP 325 (371)
T ss_dssp TCSCHHHHHHHHHSCCCCCCCHHHHS--TTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSG
T ss_pred HhhhhhhhhhhhccCCCcchhHHHhc--cccChHHHHHHHHHCCCChhhcCCHHHHhcCc
Confidence 00000000 01246788999999999999999999999753
No 261
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=5.6e-38 Score=344.92 Aligned_cols=258 Identities=24% Similarity=0.361 Sum_probs=201.5
Q ss_pred hhccCcceeeecccceeEEEEEEcCCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 674 (933)
.++|+..+.||+|+||.||+|.+++ .||+|++.... ....+.+.+|+.++++++||||+++++++...+..++|||
T Consensus 32 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e 109 (319)
T 2y4i_B 32 FEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITS 109 (319)
T ss_dssp CSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECB
T ss_pred HHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEee
Confidence 4688999999999999999999865 59999986542 3334567889999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCC
Q 002349 675 FMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSK 754 (933)
Q Consensus 675 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~ 754 (933)
|+++++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++ ++.+||+|||+++......
T Consensus 110 ~~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~ 183 (319)
T 2y4i_B 110 LCKGRTLYSVVRD--AKIVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQ 183 (319)
T ss_dssp CCCSEEHHHHTTS--SCCCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSCCC------
T ss_pred cccCCcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCCcccccccc
Confidence 9999999999963 345789999999999999999999976 999999999999998 6799999999987643211
Q ss_pred ----CceeeeecccccccCcccccc---------CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccc
Q 002349 755 ----SYTSTYIMGTIGYIDPEYART---------SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVM 821 (933)
Q Consensus 755 ----~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 821 (933)
........|++.|+|||++.+ ..++.++||||||+++|||++|+.||.............. ..
T Consensus 184 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~--~~-- 259 (319)
T 2y4i_B 184 AGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGT--GM-- 259 (319)
T ss_dssp ----CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHHHHT--TC--
T ss_pred ccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcc--CC--
Confidence 112233468999999999874 3578999999999999999999999986544333222111 11
Q ss_pred cccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCC
Q 002349 822 ETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAP 873 (933)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 873 (933)
.+.... ...+..+.+++.+||+.||++|||++++++.|+.+....
T Consensus 260 ---~~~~~~----~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~ 304 (319)
T 2y4i_B 260 ---KPNLSQ----IGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRN 304 (319)
T ss_dssp ---CCCCCC----SSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC----
T ss_pred ---CCCCCc----CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhh
Confidence 111110 011246788999999999999999999999999987654
No 262
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=6.5e-37 Score=344.98 Aligned_cols=261 Identities=20% Similarity=0.226 Sum_probs=204.0
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCC-CC-----ceeeeeeEEecCCcc
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIK-HR-----NLVSLQGYSLSSSGN 669 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~~~~~~~~~~~~ 669 (933)
.++|+..+.||+|+||+||+|.+. +++.||||++... .....++.+|+++++.++ |+ +|+++++++...+..
T Consensus 53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 131 (382)
T 2vx3_A 53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHL 131 (382)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEE
T ss_pred eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCce
Confidence 568999999999999999999976 4788999999753 234566788999988884 44 499999999999999
Q ss_pred EEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeC--CCCCeEEeecccc
Q 002349 670 LLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLD--KDFEAHLTDFGIA 747 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~--~~~~~kl~DfGla 747 (933)
++||||++ ++|.+++.. .....+++..+..++.|++.||.|||.+ ..+|+||||||+|||++ .++.+||+|||+|
T Consensus 132 ~lv~e~~~-~~L~~~l~~-~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a 208 (382)
T 2vx3_A 132 CLVFEMLS-YNLYDLLRN-TNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSS 208 (382)
T ss_dssp EEEEECCC-CBHHHHHHH-TTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred EEEEecCC-CCHHHHHhh-cCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccCc
Confidence 99999996 599999864 2235699999999999999999999954 45999999999999995 4788999999999
Q ss_pred cccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccccc-----
Q 002349 748 KSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVME----- 822 (933)
Q Consensus 748 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~----- 822 (933)
+..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.+..............+....
T Consensus 209 ~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~ 284 (382)
T 2vx3_A 209 CQLGQR----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQ 284 (382)
T ss_dssp EETTCC----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTT
T ss_pred eecccc----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHh
Confidence 876322 23457999999999999999999999999999999999999999876655444322211110000
Q ss_pred ---------ccC------------------cc-------------------ccccccCHHHHHHHHHHHHHccCCCCCCC
Q 002349 823 ---------TVD------------------PE-------------------ISATCKDLGAVKKVFQLALLCSKRQPTDR 856 (933)
Q Consensus 823 ---------~~~------------------~~-------------------~~~~~~~~~~~~~l~~li~~cl~~dP~~R 856 (933)
.+. +. .........+...+.+++.+||+.||++|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R 364 (382)
T 2vx3_A 285 APKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTR 364 (382)
T ss_dssp CTTHHHHEEECTTSCEEECCCCTTCCCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTTS
T ss_pred hHHHHHHHHhccccccccccccccccccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcCCChhhC
Confidence 000 00 00000112334578999999999999999
Q ss_pred CCHHHHHHH
Q 002349 857 PTMHEVSRV 865 (933)
Q Consensus 857 Pt~~evl~~ 865 (933)
||++|++++
T Consensus 365 pta~e~L~h 373 (382)
T 2vx3_A 365 IQPYYALQH 373 (382)
T ss_dssp CCHHHHTTS
T ss_pred CCHHHHhcC
Confidence 999999875
No 263
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=3.5e-37 Score=339.63 Aligned_cols=261 Identities=21% Similarity=0.245 Sum_probs=202.5
Q ss_pred HhhccCcceeeecccceeEEEEEEc--CCceEEEEEecccCc--hhHHHHHHHHHHHhcC---CCCceeeeeeEEe----
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK--NCKPVAIKRLYSHYP--QCLKEFETELETVGSI---KHRNLVSLQGYSL---- 664 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~--~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l---~h~niv~~~~~~~---- 664 (933)
+.++|+..+.||+|+||.||+|.+. +++.||+|++..... .....+.+|+.+++.+ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 4578999999999999999999983 578899999865331 2233566777777666 8999999999987
Q ss_pred -cCCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEee
Q 002349 665 -SSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTD 743 (933)
Q Consensus 665 -~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~D 743 (933)
.....++||||++ |+|.+++.. .....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~-~~~~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~kl~D 163 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDK-VPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLAD 163 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHH-SCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECS
T ss_pred CCCceEEEEEecCC-CCHHHHHHh-cccCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEEEec
Confidence 5567899999998 599999864 2234589999999999999999999976 999999999999999999999999
Q ss_pred cccccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccc----
Q 002349 744 FGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNA---- 819 (933)
Q Consensus 744 fGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~---- 819 (933)
||+++...... ......||+.|+|||++.+..++.++|||||||++|+|++|+.||.+................
T Consensus 164 fg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~ 241 (326)
T 1blx_A 164 FGLARIYSFQM--ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEE 241 (326)
T ss_dssp CCSCCCCCGGG--GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGG
T ss_pred CcccccccCCC--CccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcc
Confidence 99998654222 233457899999999999999999999999999999999999999876655443322211000
Q ss_pred -ccccc-----------CccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 820 -VMETV-----------DPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 820 -~~~~~-----------~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
+.... ........ ...+..+.+++.+||+.||++|||++|++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 297 (326)
T 1blx_A 242 DWPRDVALPRQAFHSKSAQPIEKFV--TDIDELGKDLLLKCLTFNPAKRISAYSALSH 297 (326)
T ss_dssp GSCTTCSSCGGGSCCCCCCCGGGTC--CSCCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred cCccccccchhhhcccCcchhhhcc--ccCCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 00000 00000000 1124678899999999999999999999964
No 264
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.8e-37 Score=340.47 Aligned_cols=254 Identities=24% Similarity=0.342 Sum_probs=198.8
Q ss_pred HHhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcC-CCCceeeeeeEEec------C
Q 002349 595 RMTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSI-KHRNLVSLQGYSLS------S 666 (933)
Q Consensus 595 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~------~ 666 (933)
...++|+..+.||+|+||.||+|.+. +++.||||++.... ...+.+.+|+++++++ +||||+++++++.. .
T Consensus 21 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~ 99 (326)
T 2x7f_A 21 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD 99 (326)
T ss_dssp CCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCC
T ss_pred CCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCcccc
Confidence 34678999999999999999999975 57899999986543 3457789999999999 89999999999976 4
Q ss_pred CccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccc
Q 002349 667 SGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGI 746 (933)
Q Consensus 667 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGl 746 (933)
...++||||+++++|.+++... ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 100 ~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~ 175 (326)
T 2x7f_A 100 DQLWLVMEFCGAGSVTDLIKNT-KGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGV 175 (326)
T ss_dssp CEEEEEEECCTTEEHHHHHHHS-GGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCTT
T ss_pred ceEEEEEEcCCCCcHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCEEEeeCcC
Confidence 5789999999999999999632 235789999999999999999999976 999999999999999999999999999
Q ss_pred ccccccCCCceeeeecccccccCccccc-----cCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccc
Q 002349 747 AKSLCVSKSYTSTYIMGTIGYIDPEYAR-----TSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVM 821 (933)
Q Consensus 747 a~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 821 (933)
+....... .......||+.|+|||++. +..++.++|||||||++|+|++|+.||.+............. ..
T Consensus 176 ~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~--~~- 251 (326)
T 2x7f_A 176 SAQLDRTV-GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRN--PA- 251 (326)
T ss_dssp TC--------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHS--CC-
T ss_pred ceecCcCc-cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcC--cc-
Confidence 98653221 1223457999999999987 567899999999999999999999999865544333221111 10
Q ss_pred cccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 822 ETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
+... ....+..+.+++.+||+.||++|||+++++++
T Consensus 252 ----~~~~----~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 287 (326)
T 2x7f_A 252 ----PRLK----SKKWSKKFQSFIESCLVKNHSQRPATEQLMKH 287 (326)
T ss_dssp ----CCCS----CSCSCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred ----ccCC----ccccCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 1110 01123578899999999999999999999874
No 265
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=1.1e-37 Score=355.17 Aligned_cols=258 Identities=26% Similarity=0.299 Sum_probs=195.7
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEecC----C--ccE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSS----S--GNL 670 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~----~--~~~ 670 (933)
.+|+..+.||+|+||+||+|++. +++.||||++.... +...+|++++++++|||||++++++... + ..+
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 46888999999999999999986 48899999986542 2235799999999999999999988542 1 256
Q ss_pred EEEEecCCCCHHHHhcC-CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCC-CCeEEeeccccc
Q 002349 671 LFYDFMENGSLWDILHG-PTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKD-FEAHLTDFGIAK 748 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~-~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~-~~~kl~DfGla~ 748 (933)
+||||+++ ++.+.+.. ......+++..+..++.|+++||+|||++ +|+||||||+|||++.+ +.+||+|||+++
T Consensus 130 lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~a~ 205 (420)
T 1j1b_A 130 LVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAK 205 (420)
T ss_dssp EEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred eehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchhhh
Confidence 89999986 66665531 12356799999999999999999999965 99999999999999965 568999999998
Q ss_pred ccccCCCceeeeecccccccCccccccC-CCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccc--------
Q 002349 749 SLCVSKSYTSTYIMGTIGYIDPEYARTS-RLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNA-------- 819 (933)
Q Consensus 749 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~-------- 819 (933)
...... ......||+.|+|||++.+. .++.++|||||||++|||++|+.||.+.....++.......+.
T Consensus 206 ~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~ 283 (420)
T 1j1b_A 206 QLVRGE--PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIRE 283 (420)
T ss_dssp ECCTTC--CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHH
T ss_pred hcccCC--CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHh
Confidence 764322 22345789999999998765 7899999999999999999999999877655544332221110
Q ss_pred ----cccccCccccccc----cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 820 ----VMETVDPEISATC----KDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 820 ----~~~~~~~~~~~~~----~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..+...+.+.... .....+..+.+++.+||+.||++|||+.|++++
T Consensus 284 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~h 337 (420)
T 1j1b_A 284 MNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH 337 (420)
T ss_dssp HCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred hChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCC
Confidence 0000001100000 001124678899999999999999999999874
No 266
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=1.2e-36 Score=339.50 Aligned_cols=260 Identities=22% Similarity=0.273 Sum_probs=201.9
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecC-----Ccc
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSS-----SGN 669 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-----~~~ 669 (933)
.++|+..+.||+|+||.||+|.+. +++.||||++.... ......+.+|++++++++||||+++++++... ...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 468999999999999999999976 57899999996543 33456788999999999999999999988654 668
Q ss_pred EEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccc
Q 002349 670 LLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKS 749 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~ 749 (933)
++||||++ ++|.+++. ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 90 ~lv~e~~~-~~L~~~~~----~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~ 161 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVIS----TQMLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLARI 161 (353)
T ss_dssp EEEECCCS-EEHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEeccC-ccHHHHHh----hcCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEecccccc
Confidence 99999997 58999985 24689999999999999999999966 999999999999999999999999999987
Q ss_pred cccCCCc---------eeeeecccccccCcccccc-CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccc
Q 002349 750 LCVSKSY---------TSTYIMGTIGYIDPEYART-SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNA 819 (933)
Q Consensus 750 ~~~~~~~---------~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~ 819 (933)
....... ......||+.|+|||++.+ ..++.++||||+||++|+|++|+.||.+..............+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 241 (353)
T 2b9h_A 162 IDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGT 241 (353)
T ss_dssp CC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCC
T ss_pred cccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCC
Confidence 6432211 1123478999999998765 67899999999999999999999999876544433322111110
Q ss_pred ccc-----------------ccC----ccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 820 VME-----------------TVD----PEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 820 ~~~-----------------~~~----~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
... ... ....... ...+..+.+++.+|++.||++|||++|++++-
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp 307 (353)
T 2b9h_A 242 PHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMF--PRVNPKGIDLLQRMLVFDPAKRITAKEALEHP 307 (353)
T ss_dssp CCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHS--TTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSG
T ss_pred CchhccccccccchhhHHhhcccCCCCcchhhhc--ccCCHHHHHHHHHhcCcCcccCCCHHHHhcCc
Confidence 000 000 0000000 01246788999999999999999999999843
No 267
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.7e-37 Score=366.67 Aligned_cols=335 Identities=18% Similarity=0.197 Sum_probs=228.4
Q ss_pred CCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCcee
Q 002349 90 DLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVF 169 (933)
Q Consensus 90 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 169 (933)
.+++++.|++++|.+....+..|+++++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46788889999988885444557888889999999888887777788888888888888888888777778888888888
Q ss_pred eeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCCCCccccccceEecccccccc
Q 002349 170 GLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTG 249 (933)
Q Consensus 170 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~ 249 (933)
+|++|.+++..+..|.++++|++|+|++|.+++..|..++++++|++|+|++|++++.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------------- 186 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------------------- 186 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----------------------
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----------------------
Confidence 8888888755555567777777777777777777777777777777777777766521
Q ss_pred ccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccc
Q 002349 250 KIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGK 329 (933)
Q Consensus 250 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 329 (933)
.++.+++|+.|++++|.+++ +...++|+.|++++|.++...+ .+
T Consensus 187 ----~~~~l~~L~~L~l~~n~l~~-----------------------------l~~~~~L~~L~ls~n~l~~~~~-~~-- 230 (597)
T 3oja_B 187 ----DLSLIPSLFHANVSYNLLST-----------------------------LAIPIAVEELDASHNSINVVRG-PV-- 230 (597)
T ss_dssp ----CGGGCTTCSEEECCSSCCSE-----------------------------EECCTTCSEEECCSSCCCEEEC-SC--
T ss_pred ----ChhhhhhhhhhhcccCcccc-----------------------------ccCCchhheeeccCCccccccc-cc--
Confidence 02233445555555554442 1122345555555555542211 11
Q ss_pred cccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceee
Q 002349 330 LTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLD 409 (933)
Q Consensus 330 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 409 (933)
. ++|+.|++++|++++ +..+..+++|++|+|++|.+++..|..|..+++|+.|+
T Consensus 231 ~------------------------~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 231 N------------------------VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp C------------------------SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred C------------------------CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 1 234444455554443 24455566666666666666666666666667777777
Q ss_pred ccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcC
Q 002349 410 MSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSG 489 (933)
Q Consensus 410 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 489 (933)
|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++.. +..+++|+.|+|++|+|+|
T Consensus 285 Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 285 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 77777764 4666677788888888888888 56777888888888888888888653 6677888899999999988
Q ss_pred cccchhhccccc-eeecCCCCCCCcc
Q 002349 490 DVMSLINCLSLS-VLFIGNPGLCGYW 514 (933)
Q Consensus 490 ~~~~~~~~~~~~-~~~~~N~~~C~~~ 514 (933)
..... -+..+. ..+.+++..|+.+
T Consensus 360 ~~~~~-~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 360 NSLRA-LFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp HHHHH-HTTTCCTTTBCCCCCCCCTT
T ss_pred hhHHH-HHHHHhhhccccccccCCcc
Confidence 64321 122222 4577888899864
No 268
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=1.2e-37 Score=349.73 Aligned_cols=252 Identities=11% Similarity=-0.009 Sum_probs=179.8
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccCc---hhHHHHHHHH---HHHhcCCCCceeeee-------eEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYP---QCLKEFETEL---ETVGSIKHRNLVSLQ-------GYS 663 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~---~~l~~l~h~niv~~~-------~~~ 663 (933)
.+|...+.||+|+||+||+|.+. +++.||||++..... ...+.+.+|+ +.++. +||||++++ +++
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEE
T ss_pred eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehhe
Confidence 46888999999999999999976 688999999977542 3445677785 45555 799988755 444
Q ss_pred ecC-----------------CccEEEEEecCCCCHHHHhcCCCCCCCCCHHHH------HHHHHHHHHHHHHhhcCCCCC
Q 002349 664 LSS-----------------SGNLLFYDFMENGSLWDILHGPTKKKKLDWDTR------LKIALGAAQGLAYLHHDCSPR 720 (933)
Q Consensus 664 ~~~-----------------~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~------~~i~~~i~~~l~~LH~~~~~~ 720 (933)
... ...++||||++ |+|.+++.. ....+++..+ ..++.|++.||+|||++ +
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~--~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~---~ 214 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFST--LDFVYVFRGDEGILALHILTAQLIRLAANLQSK---G 214 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHH--HHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHH--hccccchhhhhhhhhHHHHHHHHHHHHHHHHHC---C
Confidence 332 23799999998 899999963 1234455556 78889999999999966 9
Q ss_pred eeeccCCCCceEeCCCCCeEEeecccccccccCCCceeeeecccccccCcccccc--CCCCcchhhHHHHHHHHHHHhCC
Q 002349 721 IIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYART--SRLTEKSDVYSFGIVLLELLTGR 798 (933)
Q Consensus 721 ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwSlGv~l~elltg~ 798 (933)
|+||||||+|||++.++.+||+|||+|+.... ......+|+.|+|||++.+ ..++.++|||||||++|||++|+
T Consensus 215 ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~ 290 (371)
T 3q60_A 215 LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGT----RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLF 290 (371)
T ss_dssp EEETTCSGGGEEECTTSCEEECCGGGEEETTC----EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSS
T ss_pred CccCcCCHHHEEECCCCCEEEEecceeeecCC----CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999986532 1224467799999999987 67999999999999999999999
Q ss_pred CCCCCCcchhHHHHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002349 799 KAVDNECNLHHLILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSR 864 (933)
Q Consensus 799 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~ 864 (933)
.||.+............... .........+. ....+..+.+++.+||+.||++|||++++++
T Consensus 291 ~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 291 LPFGLVTPGIKGSWKRPSLR-VPGTDSLAFGS---CTPLPDFVKTLIGRFLNFDRRRRLLPLEAME 352 (371)
T ss_dssp CSTTBCCTTCTTCCCBCCTT-SCCCCSCCCTT---SSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred CCCCCcCcccccchhhhhhh-hccccccchhh---ccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 99986532211000000000 00000001110 0122467889999999999999999999975
No 269
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=8.7e-37 Score=332.59 Aligned_cols=253 Identities=24% Similarity=0.384 Sum_probs=194.3
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEec---------
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLS--------- 665 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~--------- 665 (933)
..++|+..+.||+|+||.||+|++. +++.||||++... ....+.+.+|++++++++||||+++++++.+
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 82 (303)
T 1zy4_A 4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT 82 (303)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence 4678999999999999999999975 6889999998643 3445778999999999999999999998864
Q ss_pred ----CCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEE
Q 002349 666 ----SSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHL 741 (933)
Q Consensus 666 ----~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl 741 (933)
....++||||+++|+|.++++. ....+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||
T Consensus 83 ~~~~~~~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~kl 157 (303)
T 1zy4_A 83 AVKKKSTLFIQMEYCENGTLYDLIHS--ENLNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKI 157 (303)
T ss_dssp ---CEEEEEEEEECCCSCBHHHHHHH--SCGGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEE
T ss_pred ccccCCceEEEEecCCCCCHHHhhhc--cccccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEEE
Confidence 3457899999999999999963 345688999999999999999999976 9999999999999999999999
Q ss_pred eecccccccccCC-------------CceeeeecccccccCccccccC-CCCcchhhHHHHHHHHHHHhCCCCCCCCcch
Q 002349 742 TDFGIAKSLCVSK-------------SYTSTYIMGTIGYIDPEYARTS-RLTEKSDVYSFGIVLLELLTGRKAVDNECNL 807 (933)
Q Consensus 742 ~DfGla~~~~~~~-------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGv~l~elltg~~p~~~~~~~ 807 (933)
+|||+++...... ........||+.|+|||++.+. .++.++||||+||++|+|++ ||......
T Consensus 158 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~ 234 (303)
T 1zy4_A 158 GDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMER 234 (303)
T ss_dssp CCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHH
T ss_pred eeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchhH
Confidence 9999998653221 1122345689999999999865 68999999999999999998 55432222
Q ss_pred hHHHHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 808 HHLILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
.......... ....++.... ..+..+.+++.+|++.||++|||+++++++
T Consensus 235 ~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 284 (303)
T 1zy4_A 235 VNILKKLRSV---SIEFPPDFDD-----NKMKVEKKIIRLLIDHDPNKRPGARTLLNS 284 (303)
T ss_dssp HHHHHHHHST---TCCCCTTCCT-----TTSHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred HHHHHhcccc---ccccCccccc-----cchHHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence 2211111110 0111111111 224568899999999999999999999985
No 270
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=339.32 Aligned_cols=254 Identities=22% Similarity=0.279 Sum_probs=198.8
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCc------
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSG------ 668 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~------ 668 (933)
++|...+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+.++++++||||+++++++.....
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 103 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD 103 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence 57889999999999999999976 58899999996643 2345678999999999999999999999987654
Q ss_pred cEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccc
Q 002349 669 NLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAK 748 (933)
Q Consensus 669 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~ 748 (933)
.++||||++ ++|.+++. ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 104 ~~lv~e~~~-~~l~~~~~-----~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~ 174 (353)
T 3coi_A 104 FYLVMPFMQ-TDLQKIMG-----LKFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLAR 174 (353)
T ss_dssp CEEEEECCS-EEGGGTTT-----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTCTT
T ss_pred EEEEecccc-CCHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeeccccc
Confidence 499999997 58888773 3489999999999999999999976 99999999999999999999999999998
Q ss_pred ccccCCCceeeeecccccccCcccccc-CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccc------
Q 002349 749 SLCVSKSYTSTYIMGTIGYIDPEYART-SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVM------ 821 (933)
Q Consensus 749 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~------ 821 (933)
..... .....||+.|+|||++.+ ..++.++||||+||++|+|++|+.||.+..............+...
T Consensus 175 ~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~ 250 (353)
T 3coi_A 175 HADAE----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQK 250 (353)
T ss_dssp C------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTT
T ss_pred CCCCC----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHH
Confidence 65321 234578999999999887 6789999999999999999999999987655443332211111000
Q ss_pred --------------cccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 822 --------------ETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 822 --------------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
....+.+.... ...+..+.+++.+|++.||++|||++|++++-
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp 307 (353)
T 3coi_A 251 LNDKAAKSYIQSLPQTPRKDFTQLF--PRASPQAADLLEKMLELDVDKRLTAAQALTHP 307 (353)
T ss_dssp CSCHHHHHHHHTSCBCSSCCTTTTC--TTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSG
T ss_pred HhhHHHHHHHHhCcCCCCccHHHhc--CCcCHHHHHHHHHHcCCCcccCCCHHHHhcCc
Confidence 00000111000 12246789999999999999999999999753
No 271
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=6.7e-37 Score=335.31 Aligned_cols=252 Identities=24% Similarity=0.321 Sum_probs=197.6
Q ss_pred hhccCcceeeecccceeEEEEEEcCCceEEEEEecccC--chhHHHHHHHHHHHhcCC--CCceeeeeeEEecCCccEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHY--PQCLKEFETELETVGSIK--HRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~--h~niv~~~~~~~~~~~~~lv 672 (933)
.++|+..+.||+|+||.||+|.+.+++.||||++.... ....+.+.+|++++++++ ||||+++++++..++..++|
T Consensus 27 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 106 (313)
T 3cek_A 27 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 106 (313)
T ss_dssp TEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEE
T ss_pred cceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEE
Confidence 46799999999999999999999889999999986543 345677899999999997 59999999999999999999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
|| +.+++|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||++++ +.+||+|||+++....
T Consensus 107 ~e-~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~ 178 (313)
T 3cek_A 107 ME-CGNIDLNSWLK---KKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKLIDFGIANQMQP 178 (313)
T ss_dssp EC-CCSEEHHHHHH---HCSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEECCCSSSCC---
T ss_pred Ee-cCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEEeeccccccccC
Confidence 99 56789999995 346789999999999999999999976 9999999999999965 8999999999987643
Q ss_pred CCCc-eeeeecccccccCcccccc-----------CCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccccc
Q 002349 753 SKSY-TSTYIMGTIGYIDPEYART-----------SRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAV 820 (933)
Q Consensus 753 ~~~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~ 820 (933)
.... ......||+.|+|||.+.+ ..++.++||||||+++|+|++|+.||..................
T Consensus 179 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~- 257 (313)
T 3cek_A 179 DTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNH- 257 (313)
T ss_dssp -----------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTS-
T ss_pred ccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhccc-
Confidence 3221 2234579999999999875 46889999999999999999999999765433222211111110
Q ss_pred ccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 821 METVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
....+.. .+..+.+++.+||+.||++||+++|++++-
T Consensus 258 ----~~~~~~~-----~~~~l~~li~~~l~~dp~~Rps~~ell~h~ 294 (313)
T 3cek_A 258 ----EIEFPDI-----PEKDLQDVLKCCLKRDPKQRISIPELLAHP 294 (313)
T ss_dssp ----CCCCCCC-----SCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred ----ccCCccc-----chHHHHHHHHHHccCCcccCcCHHHHhcCc
Confidence 1111111 135788999999999999999999999753
No 272
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=7.1e-37 Score=347.03 Aligned_cols=259 Identities=23% Similarity=0.214 Sum_probs=198.7
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCC--------CCceeeeeeEEe----
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIK--------HRNLVSLQGYSL---- 664 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~~~~~~~---- 664 (933)
++|+..+.||+|+||+||+|++. +++.||||++... ....+.+.+|++++++++ |+||+++++++.
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~ 115 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGV 115 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEET
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCC
Confidence 68999999999999999999965 4788999999753 334567889999999985 788999999987
Q ss_pred cCCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCC-------
Q 002349 665 SSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDF------- 737 (933)
Q Consensus 665 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~------- 737 (933)
.....++||||+ ++++.+.+.. .....+++..+..++.|++.||+|||+++ +|+||||||+|||++.++
T Consensus 116 ~~~~~~lv~e~~-~~~l~~~~~~-~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~~~ 191 (397)
T 1wak_A 116 NGTHICMVFEVL-GHHLLKWIIK-SNYQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRRLA 191 (397)
T ss_dssp TEEEEEEEECCC-CCBHHHHHHH-TTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHHHH
T ss_pred CCceEEEEEecc-CccHHHHHHh-cccCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhhhh
Confidence 556789999999 5566666542 23357999999999999999999999532 899999999999999775
Q ss_pred ------------------------------------------CeEEeecccccccccCCCceeeeecccccccCcccccc
Q 002349 738 ------------------------------------------EAHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYART 775 (933)
Q Consensus 738 ------------------------------------------~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 775 (933)
.+||+|||+++..... .....||+.|+|||++.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~----~~~~~gt~~y~aPE~~~~ 267 (397)
T 1wak_A 192 AEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH----FTEDIQTRQYRSLEVLIG 267 (397)
T ss_dssp HHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC----SCSCCSCGGGCCHHHHHT
T ss_pred hhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc----CccCCCCCcccCChhhcC
Confidence 7999999999875422 233479999999999999
Q ss_pred CCCCcchhhHHHHHHHHHHHhCCCCCCCCcch------hHHHHhhhccccccc-----------ccC-----ccc-----
Q 002349 776 SRLTEKSDVYSFGIVLLELLTGRKAVDNECNL------HHLILSKTANNAVME-----------TVD-----PEI----- 828 (933)
Q Consensus 776 ~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~------~~~~~~~~~~~~~~~-----------~~~-----~~~----- 828 (933)
..++.++|||||||++|||++|+.||...... ..........+.... ... ..+
T Consensus 268 ~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (397)
T 1wak_A 268 SGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKP 347 (397)
T ss_dssp SCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCC
T ss_pred CCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCC
Confidence 99999999999999999999999999743321 111111000000000 000 000
Q ss_pred --------cccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 829 --------SATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 829 --------~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
............+.+++.+||+.||++|||++|++++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 392 (397)
T 1wak_A 348 WGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRH 392 (397)
T ss_dssp CCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTS
T ss_pred cchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhC
Confidence 0001123456789999999999999999999999874
No 273
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=2.3e-36 Score=337.24 Aligned_cols=258 Identities=21% Similarity=0.263 Sum_probs=202.6
Q ss_pred hccCcceeeecccceeEEEEEEcC-C-ceEEEEEecccCchhHHHHHHHHHHHhcCCCCc------eeeeeeEEecCCcc
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKN-C-KPVAIKRLYSHYPQCLKEFETELETVGSIKHRN------LVSLQGYSLSSSGN 669 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~-~-~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~~ 669 (933)
++|+..+.||+|+||+||+|.... + +.||+|++... ....+.+.+|++++++++|++ ++.+++++...+..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (355)
T 2eu9_A 19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHM 97 (355)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEE
T ss_pred ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeE
Confidence 689999999999999999999753 3 68999998653 334567888999999997665 99999999999999
Q ss_pred EEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEe----------------
Q 002349 670 LLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILL---------------- 733 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll---------------- 733 (933)
++||||+ ++++.+.+.. .....+++.++..++.|++.||+|||++ +|+||||||+||++
T Consensus 98 ~lv~e~~-~~~l~~~l~~-~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~ 172 (355)
T 2eu9_A 98 CIAFELL-GKNTFEFLKE-NNFQPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEHKSCE 172 (355)
T ss_dssp EEEEECC-CCBHHHHHHH-TTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC-CCC
T ss_pred EEEEecc-CCChHHHHHh-ccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeccccccccccccccc
Confidence 9999999 5677776643 2335799999999999999999999965 99999999999999
Q ss_pred ---CCCCCeEEeecccccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHH
Q 002349 734 ---DKDFEAHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHL 810 (933)
Q Consensus 734 ---~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~ 810 (933)
+.++.+||+|||+++..... .....||+.|+|||++.+..++.++||||+||++|||++|+.||.........
T Consensus 173 ~~~~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~ 248 (355)
T 2eu9_A 173 EKSVKNTSIRVADFGSATFDHEH----HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHL 248 (355)
T ss_dssp EEEESCCCEEECCCTTCEETTSC----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH
T ss_pred ccccCCCcEEEeecCcccccccc----ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 56789999999999864322 23457999999999999999999999999999999999999999876554443
Q ss_pred HHhhhcccccccc-------------------------------cCccccccccCHHHHHHHHHHHHHccCCCCCCCCCH
Q 002349 811 ILSKTANNAVMET-------------------------------VDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTM 859 (933)
Q Consensus 811 ~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~ 859 (933)
.......+..... ..+.......+......+.+++.+||+.||++|||+
T Consensus 249 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~ 328 (355)
T 2eu9_A 249 VMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITL 328 (355)
T ss_dssp HHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCH
T ss_pred HHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCH
Confidence 3222211111100 000000111223445689999999999999999999
Q ss_pred HHHHHH
Q 002349 860 HEVSRV 865 (933)
Q Consensus 860 ~evl~~ 865 (933)
+|++++
T Consensus 329 ~e~l~h 334 (355)
T 2eu9_A 329 AEALLH 334 (355)
T ss_dssp HHHTTS
T ss_pred HHHhcC
Confidence 999864
No 274
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=1.2e-36 Score=336.30 Aligned_cols=254 Identities=21% Similarity=0.248 Sum_probs=172.6
Q ss_pred hhccCcc-eeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeEEec----CCccE
Q 002349 597 TENLSEK-YIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLS----SSGNL 670 (933)
Q Consensus 597 ~~~~~~~-~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~----~~~~~ 670 (933)
.++|... ++||+|+||+||+|.++ +++.||||++.... ....+....++.++||||+++++++.. ....+
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 102 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP----KARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLL 102 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH----HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH----HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEE
Confidence 4678884 46999999999999987 58899999986531 222223334566799999999999876 44578
Q ss_pred EEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCC---CCCeEEeecccc
Q 002349 671 LFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDK---DFEAHLTDFGIA 747 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~---~~~~kl~DfGla 747 (933)
+||||+++|+|.+++.. .....+++.++..++.|++.||+|||++ +|+||||||+||+++. ++.+||+|||++
T Consensus 103 lv~e~~~gg~L~~~l~~-~~~~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~ 178 (336)
T 3fhr_A 103 IIMECMEGGELFSRIQE-RGDQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDFGFA 178 (336)
T ss_dssp EEEECCTTEEHHHHHHT-C-CCCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred EEEeccCCCCHHHHHHh-cCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEeccccc
Confidence 99999999999999964 2235799999999999999999999976 9999999999999986 455999999999
Q ss_pred cccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcc
Q 002349 748 KSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPE 827 (933)
Q Consensus 748 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (933)
+..... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||.......................+..
T Consensus 179 ~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (336)
T 3fhr_A 179 KETTQN---ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNP 255 (336)
T ss_dssp EEC-------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------CCCTT
T ss_pred eecccc---ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccccccCch
Confidence 865322 22345789999999999888899999999999999999999999975433221100000000000000000
Q ss_pred ccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 828 ISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 828 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
. ....+..+.+++.+|++.||++|||++|++++-
T Consensus 256 ~-----~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp 289 (336)
T 3fhr_A 256 E-----WSEVSEDAKQLIRLLLKTDPTERLTITQFMNHP 289 (336)
T ss_dssp T-----STTCCHHHHHHHHHHSCSSGGGSCCHHHHHHSH
T ss_pred h-----hccCCHHHHHHHHHHCCCChhHCcCHHHHhcCc
Confidence 0 012246788999999999999999999999843
No 275
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=1.9e-36 Score=346.50 Aligned_cols=252 Identities=24% Similarity=0.328 Sum_probs=188.3
Q ss_pred ccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcC-CCCceeeeeeEEecCCccEEEEEecC
Q 002349 599 NLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSI-KHRNLVSLQGYSLSSSGNLLFYDFME 677 (933)
Q Consensus 599 ~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~ 677 (933)
.|...+.||+|+||+||.+...+++.||||++... ..+.+.+|+++++++ +|||||++++++.+++..++||||++
T Consensus 16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~ 92 (434)
T 2rio_A 16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN 92 (434)
T ss_dssp CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS
T ss_pred eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC
Confidence 44556789999999998777777899999998653 245678899999876 89999999999999999999999996
Q ss_pred CCCHHHHhcCCCCCC----CCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCC-------------CCeE
Q 002349 678 NGSLWDILHGPTKKK----KLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKD-------------FEAH 740 (933)
Q Consensus 678 ~gsL~~~l~~~~~~~----~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~-------------~~~k 740 (933)
|+|.+++....... ..++..++.++.|++.||+|||++ +|+||||||+||+++.+ +.+|
T Consensus 93 -gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~k 168 (434)
T 2rio_A 93 -LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENLRIL 168 (434)
T ss_dssp -EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEE
T ss_pred -CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCceEEE
Confidence 69999996422111 113335678999999999999966 99999999999999754 4899
Q ss_pred EeecccccccccCCCc---eeeeecccccccCcccccc-------CCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhH
Q 002349 741 LTDFGIAKSLCVSKSY---TSTYIMGTIGYIDPEYART-------SRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHH 809 (933)
Q Consensus 741 l~DfGla~~~~~~~~~---~~~~~~gt~~y~aPE~~~~-------~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~ 809 (933)
|+|||+++........ ......||+.|+|||++.+ ..++.++|||||||++|||++ |+.||.+......
T Consensus 169 L~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~ 248 (434)
T 2rio_A 169 ISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRES 248 (434)
T ss_dssp ECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHHH
T ss_pred EcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhHH
Confidence 9999999876443221 1234579999999999876 568999999999999999999 9999976543322
Q ss_pred HHHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 810 LILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
..... .... . .. ....+...+..+.+++.+|++.||++|||+.+++++
T Consensus 249 ~i~~~--~~~~-~----~~-~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h 296 (434)
T 2rio_A 249 NIIRG--IFSL-D----EM-KCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRH 296 (434)
T ss_dssp HHHHT--CCCC-C----CC-TTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred HHhcC--CCCc-c----cc-cccccccchHHHHHHHHHHhhCChhhCCCHHHHHhC
Confidence 11111 0000 0 00 111233556789999999999999999999999864
No 276
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-36 Score=343.56 Aligned_cols=249 Identities=21% Similarity=0.289 Sum_probs=188.5
Q ss_pred hccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcC-CCCceeeeeeEEecCCccEEEEEec
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSI-KHRNLVSLQGYSLSSSGNLLFYDFM 676 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~ 676 (933)
.+|+..++||+|+||+||.....+++.||||++..... ..+.+|+++++++ +|||||++++++.+....++||||+
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~ 100 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELC 100 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECC
Confidence 46888899999999997665566789999999965432 2356899999999 7999999999999999999999999
Q ss_pred CCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCC-----CCCeEEeecccccccc
Q 002349 677 ENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDK-----DFEAHLTDFGIAKSLC 751 (933)
Q Consensus 677 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~-----~~~~kl~DfGla~~~~ 751 (933)
+ |+|.+++.. ......+..+..++.|++.||+|||++ +|+||||||+||+++. ...+||+|||+|+...
T Consensus 101 ~-g~L~~~l~~--~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~ 174 (432)
T 3p23_A 101 A-ATLQEYVEQ--KDFAHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLA 174 (432)
T ss_dssp S-EEHHHHHHS--SSCCCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC-
T ss_pred C-CCHHHHHHh--cCCCccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccceeecc
Confidence 6 599999963 233455556789999999999999966 9999999999999953 3468899999998764
Q ss_pred cCCC--ceeeeecccccccCccccc---cCCCCcchhhHHHHHHHHHHHh-CCCCCCCCcchhHHHHhhhcccccccccC
Q 002349 752 VSKS--YTSTYIMGTIGYIDPEYAR---TSRLTEKSDVYSFGIVLLELLT-GRKAVDNECNLHHLILSKTANNAVMETVD 825 (933)
Q Consensus 752 ~~~~--~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (933)
.... .......||+.|+|||++. +..++.++||||+||++|||++ |..||............ .. .......
T Consensus 175 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~~~--~~-~~~~~~~ 251 (432)
T 3p23_A 175 VGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILL--GA-CSLDCLH 251 (432)
T ss_dssp -----------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHHHT--TC-CCCTTSC
T ss_pred CCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHh--cc-CCccccC
Confidence 3321 2234467999999999997 4567889999999999999999 89999654332222111 11 0111111
Q ss_pred ccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 826 PEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 826 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
........+.+++.+|++.||++|||++|++++
T Consensus 252 -------~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~h 284 (432)
T 3p23_A 252 -------PEKHEDVIARELIEKMIAMDPQKRPSAKHVLKH 284 (432)
T ss_dssp -------TTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred -------ccccccHHHHHHHHHHHhCCHhhCCCHHHHHhC
Confidence 112344567899999999999999999999864
No 277
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=4.3e-36 Score=329.66 Aligned_cols=252 Identities=21% Similarity=0.297 Sum_probs=182.4
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCc-h-hHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYP-Q-CLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
.++|+..+.||+|+||.||+|.+. +++.||||++..... . ..+.+.++..+++.++||||+++++++..++..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 367889999999999999999986 588999999976532 2 2334455566788889999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
||+ ++.+..+.. .....+++..+..++.|++.||+|||+. .+|+||||||+||+++.++.+||+|||+++.....
T Consensus 104 e~~-~~~~~~l~~--~~~~~~~~~~~~~~~~~i~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~ 178 (318)
T 2dyl_A 104 ELM-GTCAEKLKK--RMQGPIPERILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDD 178 (318)
T ss_dssp CCC-SEEHHHHHH--HHTSCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred ecc-CCcHHHHHH--HhccCCCHHHHHHHHHHHHHHHHHHHhh--CCEEeCCCCHHHEEECCCCCEEEEECCCchhccCC
Confidence 999 556665553 2246789999999999999999999951 28999999999999999999999999999765332
Q ss_pred CCceeeeecccccccCccccc-----cCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYAR-----TSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEI 828 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (933)
. ......||+.|+|||++. +..++.++||||||+++|+|++|+.||................. .+..
T Consensus 179 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~------~~~~ 250 (318)
T 2dyl_A 179 K--AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEE------PPLL 250 (318)
T ss_dssp ----------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSC------CCCC
T ss_pred c--cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccC------CCCC
Confidence 2 223457999999999984 45688999999999999999999999986433332222211111 1111
Q ss_pred cccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002349 829 SATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSR 864 (933)
Q Consensus 829 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~ 864 (933)
+.. ...+..+.+++.+||+.||.+|||++++++
T Consensus 251 ~~~---~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 251 PGH---MGFSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp CSS---SCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred Ccc---CCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 110 012357889999999999999999999986
No 278
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=4.9e-36 Score=337.10 Aligned_cols=260 Identities=17% Similarity=0.198 Sum_probs=197.6
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCC-----------CCceeeeeeEEec
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIK-----------HRNLVSLQGYSLS 665 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~~~~~~~~ 665 (933)
++|...+.||+|+||+||+|.+. +++.||||++... ....+.+.+|++++++++ ||||+++++++..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH 97 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhc
Confidence 57899999999999999999974 5789999999753 234567889999999886 8999999999876
Q ss_pred CC----ccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeC------C
Q 002349 666 SS----GNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLD------K 735 (933)
Q Consensus 666 ~~----~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~------~ 735 (933)
.+ ..++||||+ +++|.+++.. .....+++..+..++.|++.||+|||++ .+|+||||||+||+++ .
T Consensus 98 ~~~~~~~~~lv~e~~-~~~L~~~~~~-~~~~~~~~~~~~~i~~qi~~aL~~lH~~--~~ivH~Dikp~NIll~~~~~~~~ 173 (373)
T 1q8y_A 98 KGPNGVHVVMVFEVL-GENLLALIKK-YEHRGIPLIYVKQISKQLLLGLDYMHRR--CGIIHTDIKPENVLMEIVDSPEN 173 (373)
T ss_dssp EETTEEEEEEEECCC-CEEHHHHHHH-TTTSCCCHHHHHHHHHHHHHHHHHHHHT--TCEECSCCSGGGEEEEEEETTTT
T ss_pred cCCCCceEEEEEecC-CCCHHHHHHH-hhccCCcHHHHHHHHHHHHHHHHHHHhc--CCEEecCCChHHeEEeccCCCcC
Confidence 54 678999999 8899999864 2345699999999999999999999953 2899999999999994 4
Q ss_pred CCCeEEeecccccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcch------hH
Q 002349 736 DFEAHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNL------HH 809 (933)
Q Consensus 736 ~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~------~~ 809 (933)
.+.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...... ..
T Consensus 174 ~~~~kl~Dfg~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~ 249 (373)
T 1q8y_A 174 LIQIKIADLGNACWYDEH----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDH 249 (373)
T ss_dssp EEEEEECCCTTCEETTBC----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHH
T ss_pred cceEEEcccccccccCCC----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHH
Confidence 458999999999875432 23347899999999999999999999999999999999999999754311 11
Q ss_pred HHHhhhccccccc--------------------ccCc-c-------c-cccccCHHHHHHHHHHHHHccCCCCCCCCCHH
Q 002349 810 LILSKTANNAVME--------------------TVDP-E-------I-SATCKDLGAVKKVFQLALLCSKRQPTDRPTMH 860 (933)
Q Consensus 810 ~~~~~~~~~~~~~--------------------~~~~-~-------~-~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ 860 (933)
........+.... .+.. . . .........+..+.+++.+||+.||++|||++
T Consensus 250 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ 329 (373)
T 1q8y_A 250 IAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAG 329 (373)
T ss_dssp HHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHH
T ss_pred HHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHH
Confidence 1111000000000 0000 0 0 00011235567899999999999999999999
Q ss_pred HHHHHH
Q 002349 861 EVSRVL 866 (933)
Q Consensus 861 evl~~L 866 (933)
|++++-
T Consensus 330 ell~hp 335 (373)
T 1q8y_A 330 GLVNHP 335 (373)
T ss_dssp HHHTCG
T ss_pred HHhhCh
Confidence 999853
No 279
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=3.4e-36 Score=331.92 Aligned_cols=255 Identities=27% Similarity=0.359 Sum_probs=178.4
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC-chhHHHHHHHHH-HHhcCCCCceeeeeeEEecCCccEEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY-PQCLKEFETELE-TVGSIKHRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~-~l~~l~h~niv~~~~~~~~~~~~~lv~e 674 (933)
++|...+.||+|+||.||+|.++ +++.||||++.... .....++.+|+. +++.++||||+++++++...+..++|||
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e 101 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICME 101 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEe
Confidence 57888999999999999999986 58899999997653 233445566665 7778899999999999999999999999
Q ss_pred ecCCCCHHHHhcCC--CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 675 FMENGSLWDILHGP--TKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 675 ~~~~gsL~~~l~~~--~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
|+++ +|.+++... .....+++..+..++.|++.||.|||++ .+|+||||||+||+++.++.+||+|||+++....
T Consensus 102 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 178 (327)
T 3aln_A 102 LMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVD 178 (327)
T ss_dssp CCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEEEECCCSSSCC---
T ss_pred ecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCEEEccCCCceeccc
Confidence 9985 787776410 1256789999999999999999999952 2899999999999999999999999999987533
Q ss_pred CCCceeeeecccccccCcccc----ccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccc
Q 002349 753 SKSYTSTYIMGTIGYIDPEYA----RTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEI 828 (933)
Q Consensus 753 ~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (933)
.. ......||+.|+|||++ .+..++.++||||||+++|+|++|+.||............ ......+.+
T Consensus 179 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~------~~~~~~~~~ 250 (327)
T 3aln_A 179 SI--AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQ------VVKGDPPQL 250 (327)
T ss_dssp -----------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CC------CCCSCCCCC
T ss_pred cc--ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHH------HhcCCCCCC
Confidence 22 22334699999999998 4567899999999999999999999999754322111110 111111111
Q ss_pred cccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002349 829 SATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSR 864 (933)
Q Consensus 829 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~ 864 (933)
.... ....+..+.+++.+||+.||++|||++++++
T Consensus 251 ~~~~-~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 251 SNSE-EREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp CCCS-SCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCcc-cccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 1100 0112467889999999999999999999976
No 280
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=1.1e-36 Score=357.03 Aligned_cols=261 Identities=22% Similarity=0.263 Sum_probs=199.4
Q ss_pred hhccCcceeeecccceeEEEEEEc-CCceEEEEEeccc-CchhHHHHHHHHHHHhcCCCCceeeeeeEEec------CCc
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSH-YPQCLKEFETELETVGSIKHRNLVSLQGYSLS------SSG 668 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~------~~~ 668 (933)
.++|+..+.||+|+||.||+|.+. +++.||||++... .....+.+.+|++++++++||||+++++++.. .+.
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 368999999999999999999975 5889999998764 34456778999999999999999999998765 667
Q ss_pred cEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCC---eEEeecc
Q 002349 669 NLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFE---AHLTDFG 745 (933)
Q Consensus 669 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~---~kl~DfG 745 (933)
.++||||+++|+|.+++........+++..+..++.|++.||+|||+. +|+||||||+||+++.++. +||+|||
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~DFG 169 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIIDLG 169 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEcccc
Confidence 899999999999999997544455799999999999999999999966 9999999999999997765 8999999
Q ss_pred cccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhccc----ccc
Q 002349 746 IAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANN----AVM 821 (933)
Q Consensus 746 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~----~~~ 821 (933)
+++...... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||........+........ ...
T Consensus 170 ~a~~~~~~~--~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~ 247 (676)
T 3qa8_A 170 YAKELDQGE--LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVY 247 (676)
T ss_dssp CCCBTTSCC--CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSC
T ss_pred ccccccccc--ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhh
Confidence 998764332 23445799999999999999999999999999999999999999976533332211100000 000
Q ss_pred ccc------Ccccccc-ccCHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 002349 822 ETV------DPEISAT-CKDLGAVKKVFQLALLCSKRQPTDRPTMHEV 862 (933)
Q Consensus 822 ~~~------~~~~~~~-~~~~~~~~~l~~li~~cl~~dP~~RPt~~ev 862 (933)
+.. ....+.. .-....+..+.+++.+|+..||++|||++|+
T Consensus 248 ~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~el 295 (676)
T 3qa8_A 248 DDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQN 295 (676)
T ss_dssp CCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTC
T ss_pred hhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHH
Confidence 000 0000000 0112346789999999999999999999773
No 281
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=332.31 Aligned_cols=248 Identities=21% Similarity=0.269 Sum_probs=192.5
Q ss_pred HHHHHhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCch------hHHHHHHHHHHHhcC----CCCceeeee
Q 002349 592 DIMRMTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQ------CLKEFETELETVGSI----KHRNLVSLQ 660 (933)
Q Consensus 592 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l----~h~niv~~~ 660 (933)
+.....++|+..+.||+|+||.||+|.+. +++.||||++...... ....+.+|+++++++ +||||++++
T Consensus 25 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~ 104 (312)
T 2iwi_A 25 DREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL 104 (312)
T ss_dssp --------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred chhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence 34455678999999999999999999865 5789999999654321 223456799999988 899999999
Q ss_pred eEEecCCccEEEEEe-cCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeC-CCCC
Q 002349 661 GYSLSSSGNLLFYDF-MENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLD-KDFE 738 (933)
Q Consensus 661 ~~~~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~-~~~~ 738 (933)
+++...+..++|||| +.+++|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++ .++.
T Consensus 105 ~~~~~~~~~~~v~e~~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~ 178 (312)
T 2iwi_A 105 DWFETQEGFMLVLERPLPAQDLFDYIT---EKGPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRRGC 178 (312)
T ss_dssp EEC-----CEEEEECCSSEEEHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTTTE
T ss_pred EEEecCCeEEEEEEecCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCCCe
Confidence 999999999999999 78999999995 345799999999999999999999976 999999999999999 8899
Q ss_pred eEEeecccccccccCCCceeeeecccccccCccccccCCCC-cchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcc
Q 002349 739 AHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLT-EKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTAN 817 (933)
Q Consensus 739 ~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 817 (933)
+||+|||+++...... .....|+..|+|||++.+..+. .++||||+|+++|+|++|+.||...... .. ..
T Consensus 179 ~kl~dfg~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~---~~ 249 (312)
T 2iwi_A 179 AKLIDFGSGALLHDEP---YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQEI---LE---AE 249 (312)
T ss_dssp EEECCCSSCEECCSSC---BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHH---HH---TC
T ss_pred EEEEEcchhhhcccCc---ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHHH---hh---hc
Confidence 9999999998764322 2345699999999999877664 5899999999999999999999753211 00 00
Q ss_pred cccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHc
Q 002349 818 NAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLG 867 (933)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~ 867 (933)
. .+.. ..+..+.+++.+|++.||++|||++|++++-.
T Consensus 250 ~--------~~~~-----~~~~~~~~li~~~l~~~p~~Rps~~e~l~~~~ 286 (312)
T 2iwi_A 250 L--------HFPA-----HVSPDCCALIRRCLAPKPSSRPSLEEILLDPW 286 (312)
T ss_dssp C--------CCCT-----TSCHHHHHHHHHHTCSSTTTSCCHHHHHHSTT
T ss_pred c--------CCcc-----cCCHHHHHHHHHHccCChhhCcCHHHHhcChh
Confidence 0 0111 12356889999999999999999999998543
No 282
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=4e-36 Score=330.01 Aligned_cols=242 Identities=23% Similarity=0.339 Sum_probs=199.1
Q ss_pred HhhccCcceeeecccceeEEEEEEc-CCceEEEEEecccCch------hHHHHHHHHHHHhcCC--CCceeeeeeEEecC
Q 002349 596 MTENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQ------CLKEFETELETVGSIK--HRNLVSLQGYSLSS 666 (933)
Q Consensus 596 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~--h~niv~~~~~~~~~ 666 (933)
..++|+..+.||+|+||.||+|.+. +++.||||++...... ..+.+.+|+.++++++ ||||+++++++..+
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~ 120 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP 120 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence 4568999999999999999999965 5789999999654321 2345678999999996 59999999999999
Q ss_pred CccEEEEEecCC-CCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeC-CCCCeEEeec
Q 002349 667 SGNLLFYDFMEN-GSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLD-KDFEAHLTDF 744 (933)
Q Consensus 667 ~~~~lv~e~~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~-~~~~~kl~Df 744 (933)
+..++||||+.+ ++|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++ .++.+||+||
T Consensus 121 ~~~~lv~e~~~~~~~L~~~l~---~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~kL~Df 194 (320)
T 3a99_A 121 DSFVLILERPEPVQDLFDFIT---ERGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDF 194 (320)
T ss_dssp SEEEEEEECCSSEEEHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCC
T ss_pred CcEEEEEEcCCCCccHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCCCCEEEeeC
Confidence 999999999976 89999985 356799999999999999999999966 999999999999999 7899999999
Q ss_pred ccccccccCCCceeeeecccccccCccccccCCC-CcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccc
Q 002349 745 GIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRL-TEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMET 823 (933)
Q Consensus 745 Gla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 823 (933)
|+++..... ......||+.|+|||++.+..+ +.++||||||+++|||++|+.||..... ... ... .
T Consensus 195 g~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~---~~~-----~~~--~ 261 (320)
T 3a99_A 195 GSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE---IIR-----GQV--F 261 (320)
T ss_dssp TTCEECCSS---CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH---HHH-----CCC--C
T ss_pred ccccccccc---cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhh---hhc-----ccc--c
Confidence 999876432 2234569999999999987766 6889999999999999999999975321 100 000 0
Q ss_pred cCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002349 824 VDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRV 865 (933)
Q Consensus 824 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~ 865 (933)
... ..+..+.+++.+||+.||++|||++|++++
T Consensus 262 ~~~---------~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 294 (320)
T 3a99_A 262 FRQ---------RVSSECQHLIRWCLALRPSDRPTFEEIQNH 294 (320)
T ss_dssp CSS---------CCCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred ccc---------cCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 111 123578899999999999999999999874
No 283
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=1.8e-35 Score=318.61 Aligned_cols=233 Identities=12% Similarity=0.073 Sum_probs=184.3
Q ss_pred hccCcceeeecccceeEEEEEEcC-CceEEEEEecccC---chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEEE
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLKN-CKPVAIKRLYSHY---PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 673 (933)
++|+..+.||+|+||.||+|.+.. ++.||||++.... ....+.+.+|++++++++||||+++++++...+..++||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 579999999999999999999865 7899999997653 234477899999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
||+++++|.+++.. + ....++.+++.|++.||+|||++ +|+||||||+||+++.++.+||+++|
T Consensus 111 e~~~g~~L~~~l~~----~-~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~-------- 174 (286)
T 3uqc_A 111 EWIRGGSLQEVADT----S-PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA-------- 174 (286)
T ss_dssp ECCCEEEHHHHHTT----C-CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC--------
T ss_pred EecCCCCHHHHHhc----C-CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc--------
Confidence 99999999999942 2 35667899999999999999976 99999999999999999999998544
Q ss_pred CCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccccccc
Q 002349 754 KSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCK 833 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (933)
|++ .++.++|||||||++|||++|+.||.+........... ....... +.....
T Consensus 175 -------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~---~~~~~~~-~~~~~~-- 228 (286)
T 3uqc_A 175 -------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAE---RDTAGQP-IEPADI-- 228 (286)
T ss_dssp -------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECC---BCTTSCB-CCHHHH--
T ss_pred -------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHH---HHhccCC-CChhhc--
Confidence 333 36889999999999999999999998654322110000 0000000 000000
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHccCCCCC
Q 002349 834 DLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVLGSLVPAP 873 (933)
Q Consensus 834 ~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L~~~~~~~ 873 (933)
....+..+.+++.+||+.||++| |++|+++.|+.+....
T Consensus 229 ~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~ 267 (286)
T 3uqc_A 229 DRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVA 267 (286)
T ss_dssp CTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC--
T ss_pred ccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccC
Confidence 01224678899999999999999 9999999998875543
No 284
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.7e-35 Score=321.88 Aligned_cols=257 Identities=32% Similarity=0.570 Sum_probs=164.6
Q ss_pred cccEEeccCCcCcC--CCCCCCCCCCCccEEEeeC-CccCCCCCCccccCCcceEeeeccccccccCCcccccccccccc
Q 002349 260 ALAVLDLSCNMLSG--PIPPILGNLSYTEKLYLHS-NKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDL 336 (933)
Q Consensus 260 ~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 336 (933)
+++.|+|++|.+++ .+|..|+++++|++|+|++ |.+.+.+|..|.++++|++|+|++|++++.+|..|..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555555 4555555555556666653 55555555556666666666666666665556666666666666
Q ss_pred ccccccCCCCCCCCcccCCCCCceeccCcccCCCCCccccccc-ccceecCCcccccCCCccccccccccceeeccCCcc
Q 002349 337 NVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLE-SMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKI 415 (933)
Q Consensus 337 ~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 415 (933)
++++|++.+.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |+.|+|++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 6666666655666666666666666666666656666666665 666666666666666666666665 66666666666
Q ss_pred CCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcccchh
Q 002349 416 SGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSLI 495 (933)
Q Consensus 416 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~ 495 (933)
++.+|..|..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|+.|+|++|+++|.+|...
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 666666666666666666666666655554 6666677777777777776677777777777777777777776666655
Q ss_pred hccccc-eeecCCCCCCCcccCCcc
Q 002349 496 NCLSLS-VLFIGNPGLCGYWLHSAC 519 (933)
Q Consensus 496 ~~~~~~-~~~~~N~~~C~~~l~~~~ 519 (933)
++..+. ..+.+||++||.++. .|
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cccccChHHhcCCCCccCCCCC-CC
Confidence 555555 557778888887764 45
No 285
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.4e-34 Score=318.64 Aligned_cols=218 Identities=28% Similarity=0.383 Sum_probs=143.7
Q ss_pred cccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccccccccc
Q 002349 256 GLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFD 335 (933)
Q Consensus 256 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~ 335 (933)
..+++|+.|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.
T Consensus 129 ~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 203 (347)
T 4fmz_A 129 ANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHY 203 (347)
T ss_dssp TTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred ccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccce
Confidence 344444444444443322222 24455555555555555553322 5555566666666666553322 555666666
Q ss_pred cccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCcc
Q 002349 336 LNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKI 415 (933)
Q Consensus 336 L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 415 (933)
|++++|.+.+..+ +..+++|+.|++++|++++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++
T Consensus 204 L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred eecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCcc
Confidence 6666666654333 5666677777777777764333 66777777777777777753 4577778888888888888
Q ss_pred CCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCc
Q 002349 416 SGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLS 488 (933)
Q Consensus 416 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 488 (933)
++. ..+..+++|+.|++++|++++..|..|.++++|++|+|++|++++..| +..+++|++|++++|+++
T Consensus 278 ~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 278 SDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 754 457788888888888888888888888889999999999999987766 888899999999999875
No 286
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=4.7e-35 Score=321.88 Aligned_cols=279 Identities=20% Similarity=0.280 Sum_probs=155.7
Q ss_pred CChHHHHHHHHHHHhC-CCCCCCcCCCC--CCCCCCCCCccceEecC--------CCCcEEEEEcCCCCcCcccCCCCCC
Q 002349 22 VDSEDGATLLKIKKSF-RDVDNVLYDWT--DSPSSDYCVWRGITCDN--------VTFTVIALNLSGLNLDGEISPAVGD 90 (933)
Q Consensus 22 ~~~~d~~all~~k~~~-~~~~~~l~~w~--~~~~~~~c~w~gv~C~~--------~~~~v~~l~l~~~~l~~~~~~~l~~ 90 (933)
...+|+.||++||+++ .|+.+.+.+|. .....++|.|.|++|+. ...+|+.|+|++++++ .+|+.+++
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~ 102 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR 102 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence 3467899999999998 57777888993 11257899999999953 2245556666666655 55555555
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceee
Q 002349 91 LKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFG 170 (933)
Q Consensus 91 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 170 (933)
+++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..++++++|++|+|++|++.+.+|..++..
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~------- 173 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST------- 173 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE-------
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc-------
Confidence 666666666666555 55555555566666666655555 555555555555555555555555555444320
Q ss_pred eecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCCCCccccccceEeccccccccc
Q 002349 171 LRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGK 250 (933)
Q Consensus 171 L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~ 250 (933)
..+..|.++++|++|+|++|.++ .+|..++++++|++|+|++|++++
T Consensus 174 --------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~------------------------ 220 (328)
T 4fcg_A 174 --------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA------------------------ 220 (328)
T ss_dssp --------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC------------------------
T ss_pred --------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc------------------------
Confidence 00111223455555555555554 445455555555555555554441
Q ss_pred cCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCcccccc
Q 002349 251 IPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKL 330 (933)
Q Consensus 251 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l 330 (933)
+|..++.+++|++|+|++|.+.+.+|..|+++++|++|+|++|++.+.+|..+.++++|++|+|++|.+.+.+|..++.+
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 22234444555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ccccccccccccC
Q 002349 331 TDLFDLNVANNHL 343 (933)
Q Consensus 331 ~~L~~L~L~~N~l 343 (933)
++|+.+++..+.+
T Consensus 301 ~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 301 PANCIILVPPHLQ 313 (328)
T ss_dssp CTTCEEECCGGGS
T ss_pred cCceEEeCCHHHH
Confidence 5555554444433
No 287
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=7.5e-35 Score=352.45 Aligned_cols=237 Identities=22% Similarity=0.285 Sum_probs=191.9
Q ss_pred hccCcceeeecccceeEEEEEEc--CCceEEEEEecccC-chhHHHHHHHHHHHhcCCCCceeeeeeEEecCCc-----c
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK--NCKPVAIKRLYSHY-PQCLKEFETELETVGSIKHRNLVSLQGYSLSSSG-----N 669 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~--~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~-----~ 669 (933)
++|++.+.||+|+||+||+|.+. +++.||||++.... ....+.+.+|++++++++|||||++++++...+. .
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~ 159 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG 159 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence 68999999999999999999986 57899999986543 3455678999999999999999999999987665 6
Q ss_pred EEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccc
Q 002349 670 LLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKS 749 (933)
Q Consensus 670 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~ 749 (933)
|+||||+++++|.+++. ..+++.++..++.|++.||+|||++ +|+||||||+||+++.+ .+||+|||+++.
T Consensus 160 ~lv~E~~~g~~L~~~~~-----~~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a~~ 230 (681)
T 2pzi_A 160 YIVMEYVGGQSLKRSKG-----QKLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVSR 230 (681)
T ss_dssp EEEEECCCCEECC---------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTCEE
T ss_pred EEEEEeCCCCcHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccchh
Confidence 99999999999998773 2699999999999999999999976 99999999999999986 999999999987
Q ss_pred cccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcccc
Q 002349 750 LCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEIS 829 (933)
Q Consensus 750 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (933)
.... ....||+.|+|||++.+.. +.++|||||||++|+|++|..||.+... ....
T Consensus 231 ~~~~-----~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~---------------~~~~---- 285 (681)
T 2pzi_A 231 INSF-----GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYV---------------DGLP---- 285 (681)
T ss_dssp TTCC-----SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEEC---------------SSCC----
T ss_pred cccC-----CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCccccc---------------cccc----
Confidence 6432 3457999999999987764 8999999999999999999988864210 0000
Q ss_pred ccccCHHHHHHHHHHHHHccCCCCCCCCC-HHHHHHHHcc
Q 002349 830 ATCKDLGAVKKVFQLALLCSKRQPTDRPT-MHEVSRVLGS 868 (933)
Q Consensus 830 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt-~~evl~~L~~ 868 (933)
...........+.+++.+|++.||++||+ ++++...+..
T Consensus 286 ~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~ 325 (681)
T 2pzi_A 286 EDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTG 325 (681)
T ss_dssp TTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHH
Confidence 00111123467889999999999999995 5555555543
No 288
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.9e-34 Score=317.38 Aligned_cols=307 Identities=24% Similarity=0.387 Sum_probs=172.0
Q ss_pred CCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCc
Q 002349 88 VGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLK 167 (933)
Q Consensus 88 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 167 (933)
+..+++|++|++++|.+. .+| .+..+++|++|+|++|.+++ +|. +..+++|++|+|++|.+++ +| .++.+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence 346677888888888777 344 37778888888888887774 333 7777777777777777764 33 567777777
Q ss_pred eeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCCCCccccccceEecccccc
Q 002349 168 VFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQL 247 (933)
Q Consensus 168 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l 247 (933)
+|+|++|++.+..+ +..+++|++|++++|.....++ .+..+++|++|++++|++++..
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~------------------- 171 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVT------------------- 171 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCG-------------------
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCch-------------------
Confidence 77777777764322 6666666666666665443333 2556666666666655554211
Q ss_pred ccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccc
Q 002349 248 TGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPAL 327 (933)
Q Consensus 248 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l 327 (933)
+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +
T Consensus 172 ----~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~ 239 (347)
T 4fmz_A 172 ----P--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L 239 (347)
T ss_dssp ----G--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred ----h--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence 1 3445555556666555553322 4555555555555555553322 4455555555555555543222 4
Q ss_pred cccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccce
Q 002349 328 GKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDT 407 (933)
Q Consensus 328 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 407 (933)
..+++|+.|++++|+++ +. ..+..+++|++|++++|.+++. ..+..+++|+.
T Consensus 240 ~~l~~L~~L~l~~n~l~------------------------~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~ 291 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQIS------------------------DI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNS 291 (347)
T ss_dssp TTCTTCCEEECCSSCCC------------------------CC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred hcCCCCCEEECCCCccC------------------------CC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCE
Confidence 44444444444444444 21 2344444455555555544432 23445555555
Q ss_pred eeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccc
Q 002349 408 LDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLT 464 (933)
Q Consensus 408 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 464 (933)
|+|++|.+++..|..+..+++|+.|++++|++++..| +..+++|++|++++|+|+
T Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 5555555555555555555555555555555554444 555666666666666554
No 289
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.9e-34 Score=324.60 Aligned_cols=312 Identities=22% Similarity=0.228 Sum_probs=206.7
Q ss_pred ccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEc
Q 002349 139 LKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLD 218 (933)
Q Consensus 139 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (933)
+++|++|++++|.++...+..+..+++|++|+|++|++.+..+..|..+++|++|+|++|.+++..|..++++++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~--- 120 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT--- 120 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC---
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC---
Confidence 34555555555555533223344555555555555555443334444444444444444444444444444444444
Q ss_pred cccccccCcCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCC
Q 002349 219 LSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGH 298 (933)
Q Consensus 219 L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 298 (933)
+|+|++|.++...+..|.++++|++|+|++|.+++.
T Consensus 121 --------------------------------------------~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 156 (390)
T 3o6n_A 121 --------------------------------------------VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156 (390)
T ss_dssp --------------------------------------------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred --------------------------------------------EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc
Confidence 444444444433333344445555555555555444
Q ss_pred CCCccccCCcceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccc
Q 002349 299 IPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRL 378 (933)
Q Consensus 299 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l 378 (933)
.+..+..+++|++|++++|++++. .+..+++|+.|++++|.+.+ +...++|+.|++++|++... |.. ..
T Consensus 157 ~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~ 225 (390)
T 3o6n_A 157 EDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VN 225 (390)
T ss_dssp CTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CC
T ss_pred ChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-ccc--cc
Confidence 444455555555555555555532 23445556666666665542 23335788888888888744 322 24
Q ss_pred cccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEc
Q 002349 379 ESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDL 458 (933)
Q Consensus 379 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 458 (933)
++|+.|++++|.+++. ..+..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++ +|..+..+++|++|+|
T Consensus 226 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 302 (390)
T ss_dssp SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEEC
T ss_pred ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEEC
Confidence 7899999999999964 578999999999999999999889999999999999999999995 5777889999999999
Q ss_pred cCCccccccchhhccccccceeeecCCCCcCcccchhhccccc-eeecCCCCCCCcc
Q 002349 459 SHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSLINCLSLS-VLFIGNPGLCGYW 514 (933)
Q Consensus 459 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~-~~~~~N~~~C~~~ 514 (933)
++|+++ .+|..+..+++|+.|++++|+++... ...+..+. +.+.+|||.|+|.
T Consensus 303 ~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccchhH
Confidence 999999 56778899999999999999998874 34555666 7789999999863
No 290
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=7.5e-35 Score=330.96 Aligned_cols=240 Identities=17% Similarity=0.189 Sum_probs=179.3
Q ss_pred hccCcceeeecccceeEEEEEEc-CCceEEEEEecccC---chhHHHHHHHHHHHhcCCC-Ccee---------------
Q 002349 598 ENLSEKYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHY---PQCLKEFETELETVGSIKH-RNLV--------------- 657 (933)
Q Consensus 598 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h-~niv--------------- 657 (933)
.+|...++||+|+||+||+|.+. +++.||||++.... ....+.+.+|+.+++.++| +|..
T Consensus 78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
T 3dzo_A 78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV 157 (413)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence 45778889999999999999965 58899999987433 2336789999999999987 2211
Q ss_pred ee------eeEEec-----CCccEEEEEecCCCCHHHHhcC----CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCee
Q 002349 658 SL------QGYSLS-----SSGNLLFYDFMENGSLWDILHG----PTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRII 722 (933)
Q Consensus 658 ~~------~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~----~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iv 722 (933)
.+ ..++.. ....+++|+++ +++|.++++. ......+++..+..++.|+++||+|||++ +|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ii 233 (413)
T 3dzo_A 158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GLV 233 (413)
T ss_dssp ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---Ccc
Confidence 11 111111 12346666665 6799998841 12345688899999999999999999966 999
Q ss_pred eccCCCCceEeCCCCCeEEeecccccccccCCCceeeeecccccccCcccc----------ccCCCCcchhhHHHHHHHH
Q 002349 723 HRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYA----------RTSRLTEKSDVYSFGIVLL 792 (933)
Q Consensus 723 H~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~DvwSlGv~l~ 792 (933)
||||||+|||++.++.+||+|||+++..... ....+| +.|+|||++ .+..++.++|||||||++|
T Consensus 234 HrDiKp~NILl~~~~~~kL~DFG~a~~~~~~----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~ 308 (413)
T 3dzo_A 234 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIY 308 (413)
T ss_dssp CSCCCGGGEEECTTCCEEECCGGGCEETTEE----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHH
T ss_pred cCCcccceEEEecCCeEEEEeccceeecCCc----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHH
Confidence 9999999999999999999999999865322 344567 999999999 5556889999999999999
Q ss_pred HHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 002349 793 ELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVS 863 (933)
Q Consensus 793 elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl 863 (933)
||++|+.||.......... .. +... . ..+..+.+++.+||+.||++||++.+++
T Consensus 309 elltg~~Pf~~~~~~~~~~----------~~----~~~~-~--~~~~~~~~li~~~l~~dP~~Rpt~~~~l 362 (413)
T 3dzo_A 309 WIWCADLPNTDDAALGGSE----------WI----FRSC-K--NIPQPVRALLEGFLRYPKEDRLLPLQAM 362 (413)
T ss_dssp HHHHSSCCCCTTGGGSCSG----------GG----GSSC-C--CCCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred HHHHCCCCCCCcchhhhHH----------HH----Hhhc-c--cCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 9999999997643221110 00 0000 0 1236788999999999999999987775
No 291
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=3.3e-35 Score=325.14 Aligned_cols=244 Identities=16% Similarity=0.130 Sum_probs=185.1
Q ss_pred hhccCcceeeecccceeEEEEEEcCCceEEEEEecccC--------chhHHHHHHHHHHHhcCC---------CCceeee
Q 002349 597 TENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHY--------PQCLKEFETELETVGSIK---------HRNLVSL 659 (933)
Q Consensus 597 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~---------h~niv~~ 659 (933)
.++|+..+.||+|+||+||+|++ +++.||||++.... ....+.+.+|++++++++ |||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 46789999999999999999998 56999999997542 223477899999998886 6666655
Q ss_pred eeE-----------------Eec-------------CCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Q 002349 660 QGY-----------------SLS-------------SSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQG 709 (933)
Q Consensus 660 ~~~-----------------~~~-------------~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~ 709 (933)
.++ +.+ .+..++||||+++|++.+.+. ...+++..+..++.|++.|
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~----~~~~~~~~~~~i~~qi~~a 173 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMR----TKLSSLATAKSILHQLTAS 173 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGT----TTCCCHHHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHH----hcCCCHHHHHHHHHHHHHH
Confidence 554 332 678899999999997777663 2568999999999999999
Q ss_pred HHHhh-cCCCCCeeeccCCCCceEeCCCC--------------------CeEEeecccccccccCCCceeeeeccccccc
Q 002349 710 LAYLH-HDCSPRIIHRDVKSSNILLDKDF--------------------EAHLTDFGIAKSLCVSKSYTSTYIMGTIGYI 768 (933)
Q Consensus 710 l~~LH-~~~~~~ivH~Dikp~NIll~~~~--------------------~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~ 768 (933)
|+||| ++ +|+||||||+|||++.++ .+||+|||+|+.... ....||+.|+
T Consensus 174 L~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~------~~~~gt~~y~ 244 (336)
T 2vuw_A 174 LAVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD------GIVVFCDVSM 244 (336)
T ss_dssp HHHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET------TEEECCCCTT
T ss_pred HHHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC------CcEEEeeccc
Confidence 99999 77 999999999999999887 899999999987642 1347999999
Q ss_pred CccccccCCCCcchhhHHHHHH-HHHHHhCCCCCCCCcchhHHHHhhhcccccccccCccccccccCHHHHHHHHHHHHH
Q 002349 769 DPEYARTSRLTEKSDVYSFGIV-LLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPEISATCKDLGAVKKVFQLALL 847 (933)
Q Consensus 769 aPE~~~~~~~~~~~DvwSlGv~-l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ 847 (933)
|||++.+.. +.++||||+|++ .+++++|..||.+......................+. .....+..+.+++.+
T Consensus 245 aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~dli~~ 318 (336)
T 2vuw_A 245 DEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTP-----AMKQIKRKIQEFHRT 318 (336)
T ss_dssp CSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTCCCSSCCCSH-----HHHHHHHHHHHHHHH
T ss_pred ChhhhcCCC-ccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhhccCcccchh-----hhhhcCHHHHHHHHH
Confidence 999998776 899999998777 7788999999864211111111111010111100000 012356789999999
Q ss_pred ccCCCCCCCCCHHHHH-HH
Q 002349 848 CSKRQPTDRPTMHEVS-RV 865 (933)
Q Consensus 848 cl~~dP~~RPt~~evl-~~ 865 (933)
||+.| |++|++ ++
T Consensus 319 ~L~~d-----sa~e~l~~H 332 (336)
T 2vuw_A 319 MLNFS-----SATDLLCQH 332 (336)
T ss_dssp GGGSS-----SHHHHHHHC
T ss_pred HhccC-----CHHHHHhcC
Confidence 99977 999998 54
No 292
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=3.6e-34 Score=311.29 Aligned_cols=232 Identities=21% Similarity=0.262 Sum_probs=178.0
Q ss_pred hccCcc-eeeecccceeEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHH-hcCCCCceeeeeeEEec----CCccE
Q 002349 598 ENLSEK-YIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETV-GSIKHRNLVSLQGYSLS----SSGNL 670 (933)
Q Consensus 598 ~~~~~~-~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~~~~~~~~----~~~~~ 670 (933)
++|... +.||+|+||.||+|.+. +++.||+|++.. ...+.+|++++ +..+||||+++++++.. ....+
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 91 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 91 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEE
Confidence 466666 78999999999999975 578999999864 24677888888 55699999999999876 66789
Q ss_pred EEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCC---CCCeEEeecccc
Q 002349 671 LFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDK---DFEAHLTDFGIA 747 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~---~~~~kl~DfGla 747 (933)
+||||+++|+|.+++.. .....+++..+..++.|++.||+|||++ +|+||||||+||+++. ++.+||+|||++
T Consensus 92 lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a 167 (299)
T 3m2w_A 92 IVMECLDGGELFSRIQD-RGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFA 167 (299)
T ss_dssp EEECCCCSCBHHHHHHH-CTTCCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTC
T ss_pred EEEeecCCCcHHHHHHh-ccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEeccccc
Confidence 99999999999999964 2234799999999999999999999966 9999999999999998 788999999998
Q ss_pred cccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCCCCcchhHHHHhhhcccccccccCcc
Q 002349 748 KSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNECNLHHLILSKTANNAVMETVDPE 827 (933)
Q Consensus 748 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (933)
.... +..++.++||||+||++|||++|+.||........... . ....... ...
T Consensus 168 ~~~~-----------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~--~-~~~~~~~-~~~ 220 (299)
T 3m2w_A 168 KETT-----------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPG--M-KTRIRMG-QYE 220 (299)
T ss_dssp EECT-----------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CC--S-CCSSCTT-CCS
T ss_pred cccc-----------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHH--H-HHHHhhc-ccc
Confidence 6532 23467899999999999999999999975432221100 0 0000000 000
Q ss_pred ccccccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002349 828 ISATCKDLGAVKKVFQLALLCSKRQPTDRPTMHEVSRVL 866 (933)
Q Consensus 828 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~evl~~L 866 (933)
.+... ....+..+.+++.+|++.||++|||++|++++-
T Consensus 221 ~~~~~-~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~hp 258 (299)
T 3m2w_A 221 FPNPE-WSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHP 258 (299)
T ss_dssp SCHHH-HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred CCchh-cccCCHHHHHHHHHHcccChhhCCCHHHHhcCh
Confidence 00000 011246788999999999999999999999743
No 293
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.2e-34 Score=341.12 Aligned_cols=333 Identities=20% Similarity=0.196 Sum_probs=236.3
Q ss_pred CcCCCCCCCCCCCCC----ccceEecCC----C------------CcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCC
Q 002349 43 VLYDWTDSPSSDYCV----WRGITCDNV----T------------FTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGN 102 (933)
Q Consensus 43 ~l~~w~~~~~~~~c~----w~gv~C~~~----~------------~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n 102 (933)
.+++|.. +.+||. |.++.|+.. . ..+..++++++.++...+..+.++++|++|+|++|
T Consensus 8 ~l~~~~~--~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n 85 (597)
T 3oja_B 8 NVKPRQP--EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85 (597)
T ss_dssp ---CCCS--EECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS
T ss_pred cccCCCC--CCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC
Confidence 4678864 345663 766655421 0 23567888888888655556889999999999999
Q ss_pred cccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCccc
Q 002349 103 RLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSP 182 (933)
Q Consensus 103 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 182 (933)
.+++..|..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|+++++|++|+|++|.+++..|.
T Consensus 86 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 165 (597)
T 3oja_B 86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 165 (597)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh
Confidence 99988888999999999999999999998888899999999999999999976666689999999999999999998888
Q ss_pred ccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCCCCccccccceEeccccccccccCcccccccccc
Q 002349 183 DMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALA 262 (933)
Q Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 262 (933)
.|..+++|++|+|++|.+++. .++.+++|+.|++++|.+++. ....+|+
T Consensus 166 ~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l----------------------------~~~~~L~ 214 (597)
T 3oja_B 166 TFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL----------------------------AIPIAVE 214 (597)
T ss_dssp TTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE----------------------------ECCTTCS
T ss_pred hhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc----------------------------cCCchhh
Confidence 999999999999999999964 256788899999998887631 1223466
Q ss_pred EEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCcccccccccccccccccc
Q 002349 263 VLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNH 342 (933)
Q Consensus 263 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~ 342 (933)
.|++++|.++...+..+ ++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++..|..|+.+++|+.|+|++|+
T Consensus 215 ~L~ls~n~l~~~~~~~~---~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 215 ELDASHNSINVVRGPVN---VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289 (597)
T ss_dssp EEECCSSCCCEEECSCC---SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC
T ss_pred eeeccCCcccccccccC---CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC
Confidence 66666666653322221 456666666666664 2455666666666666666665555555555555555555555
Q ss_pred CCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCC
Q 002349 343 LEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSP 422 (933)
Q Consensus 343 l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 422 (933)
+++ +|..+ ..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.|++. |
T Consensus 290 l~~-l~~~~------------------------~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-- 340 (597)
T 3oja_B 290 LVA-LNLYG------------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-- 340 (597)
T ss_dssp CCE-EECSS------------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--
T ss_pred CCC-CCccc------------------------ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--
Confidence 543 23333 33445555555555554 3444555566666666666666543 2
Q ss_pred CCCccccccccccCcccccc
Q 002349 423 LGDLEHLLKLNLSRNQLTGF 442 (933)
Q Consensus 423 ~~~l~~L~~L~Ls~N~l~~~ 442 (933)
+..+++|+.|+|++|.+++.
T Consensus 341 ~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 341 LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCTTCCCSEEECCSSCEEHH
T ss_pred hhhcCCCCEEEeeCCCCCCh
Confidence 55567777888888887754
No 294
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.7e-33 Score=306.58 Aligned_cols=293 Identities=20% Similarity=0.292 Sum_probs=150.5
Q ss_pred chhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccc
Q 002349 141 QLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLS 220 (933)
Q Consensus 141 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (933)
+|+.+++++|.++ .+|..+. ++|+.|+|++|++.+..+..|.++++|++|++++|.+++..|..++++++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3444444444444 3443332 455555666655554444555556666666666666665556666666666666666
Q ss_pred cccccCcCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccC--CC
Q 002349 221 YNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLT--GH 298 (933)
Q Consensus 221 ~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~ 298 (933)
+|+++ .+|..+ . ++|++|++++|.+++..+..|.++++|+.|++++|.++ +.
T Consensus 111 ~n~l~-~l~~~~-----------------------~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 164 (332)
T 2ft3_A 111 KNHLV-EIPPNL-----------------------P--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164 (332)
T ss_dssp SSCCC-SCCSSC-----------------------C--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS
T ss_pred CCcCC-ccCccc-----------------------c--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC
Confidence 66655 222211 1 34455555555555444444555555555555555553 23
Q ss_pred CCCccccCCcceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccc
Q 002349 299 IPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRL 378 (933)
Q Consensus 299 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l 378 (933)
.+..+..+ +|++|++++|++++ +|..+. ++|++|++++|++.+..+..+..+++|+.|++++|++++..+..|..+
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 44445554 55566666665553 333332 455555555555555555555555555555555555555444455555
Q ss_pred cccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEc
Q 002349 379 ESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDL 458 (933)
Q Consensus 379 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 458 (933)
++|++|+|++|+++ .+|..+..+++|+.|+|++|+|++..+..|..... -....+|+.|++
T Consensus 241 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~------------------~~~~~~l~~L~l 301 (332)
T 2ft3_A 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF------------------GVKRAYYNGISL 301 (332)
T ss_dssp TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC------------------CSSSCCBSEEEC
T ss_pred CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccc------------------ccccccccceEe
Confidence 55555555555555 44444555555555555555555443333332100 000244556666
Q ss_pred cCCccc--cccchhhccccccceeeecCC
Q 002349 459 SHNHLT--GVIPEELSQLQNMFSLRLDYN 485 (933)
Q Consensus 459 s~N~l~--~~~p~~~~~l~~L~~L~l~~N 485 (933)
++|.++ +..|..+..+++|+.+++++|
T Consensus 302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 302 FNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ecCcccccccCcccccccchhhhhhcccc
Confidence 666555 455555666666666666655
No 295
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.3e-32 Score=303.41 Aligned_cols=291 Identities=19% Similarity=0.251 Sum_probs=206.6
Q ss_pred EEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhcccCc
Q 002349 73 LNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQL 152 (933)
Q Consensus 73 l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 152 (933)
+++++++++ .+|..+. +.|++|+|++|++++..+..|+++++|++|+|++|.+++..|..|+++++|++|+|++|++
T Consensus 36 l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (330)
T 1xku_A 36 VQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112 (330)
T ss_dssp EECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC
Confidence 334445555 4555543 6899999999999987777899999999999999999988899999999999999999999
Q ss_pred cCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccC--ccCcCCcCCCCCcEEccccccccCcCCC
Q 002349 153 IGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTG--SIPQNIGNCTSFQVLDLSYNQLSGEIPF 230 (933)
Q Consensus 153 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 230 (933)
+ .+|..+. ++|++|++++|++++..+..+.++++|++|++++|.++. ..+..+.++++|++|++++|+++. +|.
T Consensus 113 ~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~ 188 (330)
T 1xku_A 113 K-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ 188 (330)
T ss_dssp S-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCS
T ss_pred C-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCc
Confidence 8 5676665 799999999999998878889999999999999999963 678889999999999999999883 444
Q ss_pred CccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcce
Q 002349 231 NIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLH 310 (933)
Q Consensus 231 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 310 (933)
.+. .+|++|++++|++++..|..+..+++|+.|+|++|.+++..+..|..+++|++|+|++|+++ .+|..+..+++|+
T Consensus 189 ~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~ 266 (330)
T 1xku_A 189 GLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ 266 (330)
T ss_dssp SCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred ccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcC
Confidence 332 45666666666666655666666666666666666666555555555666666666666655 4555555555555
Q ss_pred EeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCC--CCCcccccccccceecCCc
Q 002349 311 YLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNG--TIPPAFQRLESMTYLNLSL 388 (933)
Q Consensus 311 ~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~L~~ 388 (933)
+|++++|+|++..+..|.... .......|+.|++++|.+.. ..|..|..+.+|+.++|++
T Consensus 267 ~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 267 VVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp EEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred EEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence 555555555544333332210 00112456666777776642 4556677777777777777
Q ss_pred cc
Q 002349 389 NN 390 (933)
Q Consensus 389 N~ 390 (933)
|+
T Consensus 329 N~ 330 (330)
T 1xku_A 329 YK 330 (330)
T ss_dssp --
T ss_pred cC
Confidence 64
No 296
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.6e-32 Score=298.67 Aligned_cols=287 Identities=22% Similarity=0.273 Sum_probs=164.9
Q ss_pred CCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCCCCccccccceEeccc
Q 002349 165 NLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQG 244 (933)
Q Consensus 165 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~ 244 (933)
+|+.+++++|.++ .+|..+. ++|++|++++|.+++..|..+.++++|++|+|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------------- 91 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS------------------- 91 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-------------------
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-------------------
Confidence 4555666655554 3343332 34555555555555444444455555444444444433
Q ss_pred cccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCC
Q 002349 245 NQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIP 324 (933)
Q Consensus 245 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 324 (933)
+..|..|+.+++|++|+|++|.++ .+|..+. ++|++|++++|++++..+..|.++++|+.|++++|.++.
T Consensus 92 ----~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--- 161 (332)
T 2ft3_A 92 ----KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN--- 161 (332)
T ss_dssp ----EECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG---
T ss_pred ----ccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc---
Confidence 334455566666666666666666 3333332 556666666666665444455666666666666666542
Q ss_pred ccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccc
Q 002349 325 PALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGN 404 (933)
Q Consensus 325 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 404 (933)
.+..+..+..+ +|+.|++++|++++ +|..+. ++|++|++++|.+++..+..+..+++
T Consensus 162 -------------------~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~ 218 (332)
T 2ft3_A 162 -------------------SGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSK 218 (332)
T ss_dssp -------------------GGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTT
T ss_pred -------------------CCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCC
Confidence 01333344444 45555555555543 232222 45666666666666555566666666
Q ss_pred cceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhcc------ccccc
Q 002349 405 LDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQ------LQNMF 478 (933)
Q Consensus 405 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~ 478 (933)
|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+.++++|+.|+|++|++++..+..+.. .++|+
T Consensus 219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~ 297 (332)
T 2ft3_A 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297 (332)
T ss_dssp CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBS
T ss_pred CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccccccc
Confidence 777777777776666666777777777777777777 56667777778888888888887766666654 36789
Q ss_pred eeeecCCCCc--Ccccc-hhhccccc-eeecCC
Q 002349 479 SLRLDYNNLS--GDVMS-LINCLSLS-VLFIGN 507 (933)
Q Consensus 479 ~L~l~~N~l~--~~~~~-~~~~~~~~-~~~~~N 507 (933)
.|++++|++. +..+. ...+..+. +.+.+|
T Consensus 298 ~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp EEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ceEeecCcccccccCcccccccchhhhhhcccc
Confidence 9999999998 33332 23344444 444444
No 297
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5e-32 Score=298.83 Aligned_cols=268 Identities=21% Similarity=0.264 Sum_probs=145.7
Q ss_pred CCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCCCCccccccceEeccc
Q 002349 165 NLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQG 244 (933)
Q Consensus 165 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~ 244 (933)
+|+.|+|++|++++..+..|.++++|++|+|++|.+++..|..++++++|++|+|++|+++ .+|..+. .+|++|++++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~~L~~L~l~~ 130 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP-KTLQELRVHE 130 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC-TTCCEEECCS
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc-ccccEEECCC
Confidence 4444455555444444444455555555555555555444555555555555555555555 3333222 3455555555
Q ss_pred cccccccCccccccccccEEeccCCcCcC--CCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeecccccccc
Q 002349 245 NQLTGKIPSVIGLMQALAVLDLSCNMLSG--PIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGH 322 (933)
Q Consensus 245 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 322 (933)
|++++..+..+..+++|++|++++|.++. ..+..|.++++|++|++++|.++. +|..+. ++|++|++++|++++.
T Consensus 131 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKV 207 (330)
T ss_dssp SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEE
T ss_pred CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCcc
Confidence 55555555566667777777777776643 455566666666666666666663 343332 4555666666655555
Q ss_pred CCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccc
Q 002349 323 IPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRI 402 (933)
Q Consensus 323 ~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 402 (933)
.+..+..+++|+.|++++|++++..+..+..+++|+.|++++|+++ .+|..+..+
T Consensus 208 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------------~lp~~l~~l 262 (330)
T 1xku_A 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-------------------------KVPGGLADH 262 (330)
T ss_dssp CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-------------------------SCCTTTTTC
T ss_pred CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-------------------------cCChhhccC
Confidence 5555555555555555555555444444444444555555544444 334444444
Q ss_pred cccceeeccCCccCCCCCCCCCC------ccccccccccCccccc--ccccccccccccceEEccCCc
Q 002349 403 GNLDTLDMSNNKISGSIPSPLGD------LEHLLKLNLSRNQLTG--FIPGEFGNLRSVMEIDLSHNH 462 (933)
Q Consensus 403 ~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~ 462 (933)
++|++|+|++|+|++..+..|.. .+.|+.|++++|.+.. ..|..|..+.+|+.++|++|+
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 44555555555554444444432 3566777777777653 556778888888888888874
No 298
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.3e-36 Score=352.29 Aligned_cols=379 Identities=21% Similarity=0.135 Sum_probs=221.4
Q ss_pred CCccEEEccCCcccccCCC-CccCCCCCceecccccccCC----CCCcccccccchhhhhhcccCccCCCCcccc-cCC-
Q 002349 92 KDLQSIDLRGNRLSGQIPD-EIGDCSSLKSLDLSFNELYG----DIPFSISKLKQLEFLILKNNQLIGPIPSTLS-QLP- 164 (933)
Q Consensus 92 ~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~- 164 (933)
++|++|||++|+++..... .+..+++|++|+|++|.+++ .++..+..+++|++|+|++|.+++..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4577888888877643322 26677778888888777763 2345556666777777777766543333222 233
Q ss_pred ---CCceeeeecCCCCC----CcccccccCCCCcEEeccCccccCccCcCCc-----CCCCCcEEccccccccCcCCCCc
Q 002349 165 ---NLKVFGLRGNNLVG----TLSPDMCQLSGLWYFDVRNNSLTGSIPQNIG-----NCTSFQVLDLSYNQLSGEIPFNI 232 (933)
Q Consensus 165 ---~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~N~l~~~~p~~~ 232 (933)
+|++|+|++|+++. .++..+..+++|++|++++|.+++..+..+. ..++|++|+|++|++++....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-- 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE-- 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--
Confidence 46666666666653 3355555555666666666655533222221 133455555555544421110
Q ss_pred cccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCC-----CCCCccEEEeeCCccCCC----CCCcc
Q 002349 233 GFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILG-----NLSYTEKLYLHSNKLTGH----IPPEL 303 (933)
Q Consensus 233 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~----~p~~l 303 (933)
.++..+..+++|++|++++|.+++..+..+. ..++|++|+|++|.+++. ++..+
T Consensus 161 -----------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 223 (461)
T 1z7x_W 161 -----------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223 (461)
T ss_dssp -----------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred -----------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence 2244455566777777777776544333332 245677777777777653 35556
Q ss_pred ccCCcceEeeeccccccccC-----CccccccccccccccccccCCCC----CCCCcccCCCCCceeccCcccCCCCCcc
Q 002349 304 GNMTKLHYLELNDNQLTGHI-----PPALGKLTDLFDLNVANNHLEGP----IPDNLSSCTNLNSLNVHGNKLNGTIPPA 374 (933)
Q Consensus 304 ~~l~~L~~L~L~~N~l~~~~-----~~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~~~~~~~ 374 (933)
..+++|++|++++|.+++.. +..+..+++|+.|++++|+++.. ++..+..+++|++|++++|++.+..+..
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 66777777777777776432 22223466777777777776642 3445556677777777777765433333
Q ss_pred cccc-----cccceecCCcccccCC----CccccccccccceeeccCCccCCCCCCCCCC-----ccccccccccCcccc
Q 002349 375 FQRL-----ESMTYLNLSLNNIRGP----IPVELSRIGNLDTLDMSNNKISGSIPSPLGD-----LEHLLKLNLSRNQLT 440 (933)
Q Consensus 375 ~~~l-----~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~ 440 (933)
+... ++|++|++++|.+++. ++..+..+++|++|+|++|.+++..+..+.. .++|+.|+|++|+++
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 3322 5777777777777654 3444556677777777777776543333332 457777777777777
Q ss_pred c----ccccccccccccceEEccCCccccccchhhc-----cccccceeeecCCCCcC
Q 002349 441 G----FIPGEFGNLRSVMEIDLSHNHLTGVIPEELS-----QLQNMFSLRLDYNNLSG 489 (933)
Q Consensus 441 ~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~l~~N~l~~ 489 (933)
+ .+|..+..+++|++|+|++|++++.....+. ...+|+.|++.+|.+..
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 5 5666777777777777777777654332222 12346666666665544
No 299
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.6e-36 Score=345.69 Aligned_cols=385 Identities=21% Similarity=0.187 Sum_probs=253.4
Q ss_pred cEEEEEcCCCCcCcccCCC-CCCCCCccEEEccCCcccc----cCCCCccCCCCCceecccccccCCCCCcccc-ccc--
Q 002349 69 TVIALNLSGLNLDGEISPA-VGDLKDLQSIDLRGNRLSG----QIPDEIGDCSSLKSLDLSFNELYGDIPFSIS-KLK-- 140 (933)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~-- 140 (933)
+++.|||++++++...... +..+++|++|+|++|++++ .++..+..+++|++|||++|.+++..+..+. .++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 6789999999998654443 7789999999999999985 4677888999999999999999865555543 455
Q ss_pred --chhhhhhcccCccC----CCCcccccCCCCceeeeecCCCCCCccccccc-----CCCCcEEeccCccccCc----cC
Q 002349 141 --QLEFLILKNNQLIG----PIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQ-----LSGLWYFDVRNNSLTGS----IP 205 (933)
Q Consensus 141 --~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~----~p 205 (933)
+|++|+|++|+++. .+|..+..+++|++|+|++|.+++..+..+.. .++|++|++++|.+++. ++
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 69999999999984 56888999999999999999997655544432 56899999999999874 36
Q ss_pred cCCcCCCCCcEEccccccccCcCCCCcc------ccccceEeccccccccc----cCccccccccccEEeccCCcCcCCC
Q 002349 206 QNIGNCTSFQVLDLSYNQLSGEIPFNIG------FLQIATLSLQGNQLTGK----IPSVIGLMQALAVLDLSCNMLSGPI 275 (933)
Q Consensus 206 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~------~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~ 275 (933)
..+..+++|++|++++|+++...+..+. ..+|++|+|++|++++. ++..+..+++|++|++++|.+++..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 6677789999999999998754333221 22567777777776653 4555566666777777766665421
Q ss_pred -----CCCCCCCCCccEEEeeCCccCCC----CCCccccCCcceEeeeccccccccCCccccccccccccccccccCCCC
Q 002349 276 -----PPILGNLSYTEKLYLHSNKLTGH----IPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGP 346 (933)
Q Consensus 276 -----~~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 346 (933)
+..+..+++|++|+|++|.+++. ++..+..+++|++|++++|.+++..+..+...
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~---------------- 307 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET---------------- 307 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH----------------
Confidence 12222455666666666666532 34445555566666666665553322222211
Q ss_pred CCCCcccCCCCCceeccCcccCCC----CCcccccccccceecCCcccccCCCcccccc-----ccccceeeccCCccCC
Q 002349 347 IPDNLSSCTNLNSLNVHGNKLNGT----IPPAFQRLESMTYLNLSLNNIRGPIPVELSR-----IGNLDTLDMSNNKISG 417 (933)
Q Consensus 347 ~p~~l~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~ 417 (933)
.....++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|+|++|.+++
T Consensus 308 ---l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 308 ---LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp ---HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred ---hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 000113555555555555533 2344555566666666666666444443332 4567777777777764
Q ss_pred ----CCCCCCCCccccccccccCcccccccccccc-----cccccceEEccCCccccccchhhc
Q 002349 418 ----SIPSPLGDLEHLLKLNLSRNQLTGFIPGEFG-----NLRSVMEIDLSHNHLTGVIPEELS 472 (933)
Q Consensus 418 ----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~p~~~~ 472 (933)
.+|..+..+++|++|+|++|++++.....+. ...+|+.|++.+|.+....+..+.
T Consensus 385 ~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~ 448 (461)
T 1z7x_W 385 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 448 (461)
T ss_dssp HHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHH
Confidence 5566666677777777777777644222221 133577777777776655554443
No 300
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=290.88 Aligned_cols=285 Identities=21% Similarity=0.237 Sum_probs=198.0
Q ss_pred CCCCCCccceEecCCCCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCC
Q 002349 52 SSDYCVWRGITCDNVTFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGD 131 (933)
Q Consensus 52 ~~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 131 (933)
..++|.|.|+ |+ +++++++ .+|..+. ++|++|+|++|++++..+..|+++++|++|+|++|.+++.
T Consensus 26 ~~~~C~~~~~-c~----------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (353)
T 2z80_A 26 ASLSCDRNGI-CK----------GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91 (353)
T ss_dssp -CCEECTTSE-EE----------CCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cCCCCCCCeE-ee----------CCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc
Confidence 3577999987 74 4566777 5666555 4899999999999976666899999999999999999987
Q ss_pred CCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcc-cccccCCCCcEEeccCc-cccCccCcCCc
Q 002349 132 IPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLS-PDMCQLSGLWYFDVRNN-SLTGSIPQNIG 209 (933)
Q Consensus 132 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~p~~l~ 209 (933)
.|..|+++++|++|+|++|++++..+..++++++|++|+|++|++++..+ ..+..+++|++|++++| .+++..+..+.
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 171 (353)
T 2z80_A 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence 78889999999999999999986555558889999999999998885443 46788888888888888 46665667788
Q ss_pred CCCCCcEEccccccccCcCCCCccc-cccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEE
Q 002349 210 NCTSFQVLDLSYNQLSGEIPFNIGF-LQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKL 288 (933)
Q Consensus 210 ~l~~L~~L~L~~N~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 288 (933)
++++|++|++++|++++..|..+.. .+|++|++++|+++...+..+..+++|+.|++++|.+++..+..+..
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------- 244 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST------- 244 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc-------
Confidence 8888888888888877655554433 24555555555554333333334555555555555555443332221
Q ss_pred EeeCCccCCCCCCccccCCcceEeeeccccccc----cCCccccccccccccccccccCCCCCCCCcccCCCCCceeccC
Q 002349 289 YLHSNKLTGHIPPELGNMTKLHYLELNDNQLTG----HIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHG 364 (933)
Q Consensus 289 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~----~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~ 364 (933)
......++.++|+++.+++ .+|..+..+++|+.|++++|+++...+..|..+++|++|++++
T Consensus 245 --------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 245 --------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp ----------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred --------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeC
Confidence 1123344555555555543 3566677778888888888888743333357888888888888
Q ss_pred cccCCCC
Q 002349 365 NKLNGTI 371 (933)
Q Consensus 365 N~l~~~~ 371 (933)
|++.+..
T Consensus 311 N~~~~~~ 317 (353)
T 2z80_A 311 NPWDCSC 317 (353)
T ss_dssp SCBCCCH
T ss_pred CCccCcC
Confidence 8887543
No 301
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.3e-30 Score=284.24 Aligned_cols=289 Identities=20% Similarity=0.234 Sum_probs=201.2
Q ss_pred CCCCCCccceEecCCCCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCC-
Q 002349 52 SSDYCVWRGITCDNVTFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYG- 130 (933)
Q Consensus 52 ~~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~- 130 (933)
..+.|.|.+|.|++. +++ .+|..+. ++|++|+|++|+++...+..|+++++|++|+|++|.++.
T Consensus 3 ~~C~C~~~~l~c~~~------------~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 67 (306)
T 2z66_A 3 SRCSCSGTEIRCNSK------------GLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67 (306)
T ss_dssp TTCEEETTEEECCSS------------CCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE
T ss_pred CCCeeCCCEEEcCCC------------Ccc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc
Confidence 346688999888643 333 4454443 689999999999984433458999999999999999873
Q ss_pred -CCCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcc-cccccCCCCcEEeccCccccCccCcCC
Q 002349 131 -DIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLS-PDMCQLSGLWYFDVRNNSLTGSIPQNI 208 (933)
Q Consensus 131 -~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l 208 (933)
.+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|++++..+ ..+..+++|++|++++|.+++..+..+
T Consensus 68 ~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 146 (306)
T 2z66_A 68 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146 (306)
T ss_dssp EEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT
T ss_pred cCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc
Confidence 33677778889999999999988 467778888999999999998886655 567888888888888888888778888
Q ss_pred cCCCCCcEEccccccccCcCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEE
Q 002349 209 GNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKL 288 (933)
Q Consensus 209 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 288 (933)
..+++|++|++++|++++. ..|..+..+++|++|+|++|.+++..|..|..+++|++|
T Consensus 147 ~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 204 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSFQEN----------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204 (306)
T ss_dssp TTCTTCCEEECTTCEEGGG----------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccCcCCCEEECCCCccccc----------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEE
Confidence 8888888888888877641 234445556666666666666666556666666666666
Q ss_pred EeeCCccCCCCCCccccCCcceEeeeccccccccCCccccccc-cccccccccccCCCCCC--CCcccCCCCCceeccCc
Q 002349 289 YLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLT-DLFDLNVANNHLEGPIP--DNLSSCTNLNSLNVHGN 365 (933)
Q Consensus 289 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~l~~N 365 (933)
+|++|++++..+..+..+++|++|+|++|++++..|..+..++ +|+.|++++|++.+... .....+...+.+.+..+
T Consensus 205 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~ 284 (306)
T 2z66_A 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE 284 (306)
T ss_dssp ECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGG
T ss_pred ECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccc
Confidence 6666666655555566666666666666666666666666663 66666666666654221 01122334445555666
Q ss_pred ccCCCCCcccccc
Q 002349 366 KLNGTIPPAFQRL 378 (933)
Q Consensus 366 ~l~~~~~~~~~~l 378 (933)
.+....|..+.+.
T Consensus 285 ~~~C~~p~~~~g~ 297 (306)
T 2z66_A 285 RMECATPSDKQGM 297 (306)
T ss_dssp GCBEEESGGGTTC
T ss_pred ccccCCchhhCCc
Confidence 6665566655543
No 302
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.7e-30 Score=289.31 Aligned_cols=277 Identities=18% Similarity=0.205 Sum_probs=199.3
Q ss_pred EEccccccccCcCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCcc
Q 002349 216 VLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKL 295 (933)
Q Consensus 216 ~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 295 (933)
..++++|.++ .+|..+. .++++|+|++|++++..+..|..+++|++|+|++|.+++..+..|+++++|++|+|++|++
T Consensus 35 ~c~~~~~~l~-~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EEECCSTTCS-SCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeeCCCCCcc-ccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 3444444444 2333222 2455555555555555555677777888888888888777777777888888888888888
Q ss_pred CCCCCCccccCCcceEeeeccccccccCC-ccccccccccccccccc-cCCCCCCCCcccCCCCCceeccCcccCCCCCc
Q 002349 296 TGHIPPELGNMTKLHYLELNDNQLTGHIP-PALGKLTDLFDLNVANN-HLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPP 373 (933)
Q Consensus 296 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 373 (933)
++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+.++++|+.|++++|++++..|.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 75555557778888888888888874433 36777888888888887 46655667778888888888888888877778
Q ss_pred ccccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCC---CccccccccccCccccc----ccccc
Q 002349 374 AFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLG---DLEHLLKLNLSRNQLTG----FIPGE 446 (933)
Q Consensus 374 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~----~~p~~ 446 (933)
.|..+++|++|++++|.++......+..+++|+.|+|++|.+++..+..+. ....++.++|++|.+++ .+|..
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~ 272 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL 272 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHH
T ss_pred HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHH
Confidence 888888888888888888644444455678888888888888866555443 24556667777777664 47888
Q ss_pred cccccccceEEccCCccccccchhhccccccceeeecCCCCcCcccch
Q 002349 447 FGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSL 494 (933)
Q Consensus 447 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 494 (933)
+.++++|++|+|++|+++...+..+..+++|++|+|++|+++|..+.+
T Consensus 273 l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence 999999999999999999544444689999999999999999988754
No 303
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.7e-32 Score=316.26 Aligned_cols=219 Identities=26% Similarity=0.229 Sum_probs=174.1
Q ss_pred ccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCcccccccccccc
Q 002349 257 LMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDL 336 (933)
Q Consensus 257 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 336 (933)
.+++|+.|+|++|.+++..|..|+++++|++|+|++|.+++..| +..+++|++|+|++|.|++.. ..++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 44578888888888887777788888888888888888876555 778888888888888887543 23788888
Q ss_pred ccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccc-cccccceeeccCCcc
Q 002349 337 NVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELS-RIGNLDTLDMSNNKI 415 (933)
Q Consensus 337 ~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l 415 (933)
++++|.+.+..+. .+++|+.|++++|++++..|..|+.+++|++|+|++|.+++.+|..+. .+++|+.|+|++|.|
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 8888888866554 346788888888888887788888888888888888888887777775 688888888888888
Q ss_pred CCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcC
Q 002349 416 SGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSG 489 (933)
Q Consensus 416 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 489 (933)
++..+ +..+++|+.|+|++|+|++..| .|..+++|+.|+|++|+|++ +|..+..+++|+.|++++|++.|
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred ccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 86532 3358888889999998886544 48888889999999998885 67778888888888888888884
No 304
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.9e-33 Score=336.43 Aligned_cols=430 Identities=12% Similarity=0.070 Sum_probs=310.2
Q ss_pred CCCCccceEecCCCCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcc---cccCCCCcc------------CCCCC
Q 002349 54 DYCVWRGITCDNVTFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRL---SGQIPDEIG------------DCSSL 118 (933)
Q Consensus 54 ~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l---~~~~p~~l~------------~l~~L 118 (933)
-|++|.++.+... + .+.+.+ .....++..+..+++|++|+|+++.. .+.+|..++ .+++|
T Consensus 40 vck~W~~~~~~~~--~--~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L 114 (592)
T 3ogk_B 40 VCRRWFKIDSETR--E--HVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL 114 (592)
T ss_dssp SCHHHHHHHHHHC--C--EEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HhHHHHHhhhccc--c--EEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCC
Confidence 3458999865321 2 222222 23333444566788899999987532 245555544 78999
Q ss_pred ceecccccccCCCCCcccccc--cchhhhhhcccC-ccC-CCCcccccCCCCceeeeecCCCCCC----cccccccCCCC
Q 002349 119 KSLDLSFNELYGDIPFSISKL--KQLEFLILKNNQ-LIG-PIPSTLSQLPNLKVFGLRGNNLVGT----LSPDMCQLSGL 190 (933)
Q Consensus 119 ~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~L~~n~-l~~-~~p~~l~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L 190 (933)
++|+|++|.+++..+..+..+ .+|++|+|++|. ++. .++....++++|++|+|++|.+++. ++..+..+++|
T Consensus 115 ~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L 194 (592)
T 3ogk_B 115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194 (592)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCC
T ss_pred CeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCc
Confidence 999999999887777777664 459999999887 221 1233345789999999999998766 44455678999
Q ss_pred cEEeccCcccc----CccCcCCcCCCCCcEEccccccccCcCCCCc-cccccceEeccccccc---cccCcccccccccc
Q 002349 191 WYFDVRNNSLT----GSIPQNIGNCTSFQVLDLSYNQLSGEIPFNI-GFLQIATLSLQGNQLT---GKIPSVIGLMQALA 262 (933)
Q Consensus 191 ~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~L~L~~n~l~---~~~p~~~~~l~~L~ 262 (933)
++|++++|.++ +.++..+.++++|+.|++++|.+.+ +|..+ ...+|++|+++++... +..+..+..+++|+
T Consensus 195 ~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~ 273 (592)
T 3ogk_B 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273 (592)
T ss_dssp CEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCC
T ss_pred cEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccccc
Confidence 99999999987 3445556788999999999998875 34333 3457889988864333 33455677888999
Q ss_pred EEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCC-CccccCCcceEeeeccccccccCCcccccccccccccccc-
Q 002349 263 VLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIP-PELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVAN- 340 (933)
Q Consensus 263 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~- 340 (933)
.|+++++.. +.+|..+..+++|++|+|++|.+++... ..+..+++|+.|+++++...+.++..+..+++|++|++++
T Consensus 274 ~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g 352 (592)
T 3ogk_B 274 RLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352 (592)
T ss_dssp EEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECC
T ss_pred ccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecC
Confidence 999988644 3677788889999999999999765433 3367889999999994433333444456788999999993
Q ss_pred ----------ccCCCC-CCCCcccCCCCCceeccCcccCCCCCccccc-ccccceecCC----cccccCC-----Ccccc
Q 002349 341 ----------NHLEGP-IPDNLSSCTNLNSLNVHGNKLNGTIPPAFQR-LESMTYLNLS----LNNIRGP-----IPVEL 399 (933)
Q Consensus 341 ----------N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~L~----~N~l~~~-----~~~~~ 399 (933)
|.+++. ++..+..+++|++|+++.|++++..+..+.. +++|+.|+++ .|.+++. ++..+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~ 432 (592)
T 3ogk_B 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432 (592)
T ss_dssp CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred ccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH
Confidence 555532 1222345889999999999998766666665 8899999996 6778764 33446
Q ss_pred ccccccceeeccCCc--cCCCCCCCCC-CccccccccccCccccc-ccccccccccccceEEccCCccccc-cchhhccc
Q 002349 400 SRIGNLDTLDMSNNK--ISGSIPSPLG-DLEHLLKLNLSRNQLTG-FIPGEFGNLRSVMEIDLSHNHLTGV-IPEELSQL 474 (933)
Q Consensus 400 ~~l~~L~~L~Ls~N~--l~~~~p~~~~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l 474 (933)
..+++|+.|+|++|. +++..+..+. .+++|++|+|++|++++ .++..+.++++|++|+|++|++++. ++.....+
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l 512 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL 512 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc
Confidence 778999999997543 6554444443 37889999999999986 3455668899999999999998765 34455679
Q ss_pred cccceeeecCCCCcCc
Q 002349 475 QNMFSLRLDYNNLSGD 490 (933)
Q Consensus 475 ~~L~~L~l~~N~l~~~ 490 (933)
++|++|+|++|+++..
T Consensus 513 ~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 513 PSLRYLWVQGYRASMT 528 (592)
T ss_dssp SSCCEEEEESCBCCTT
T ss_pred CccCeeECcCCcCCHH
Confidence 9999999999998765
No 305
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.7e-29 Score=275.34 Aligned_cols=250 Identities=23% Similarity=0.279 Sum_probs=206.4
Q ss_pred eEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCC--CCCccccCCcceEeeecc
Q 002349 239 TLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGH--IPPELGNMTKLHYLELND 316 (933)
Q Consensus 239 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~L~~L~L~~ 316 (933)
.++++++.++ .+|..+ .++|++|+|++|.++...+..|.++++|++|+|++|.++.. .+..+..+++|++|+|++
T Consensus 11 ~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 3445555554 233332 25788888888888866666678888888888888888732 356677788899999999
Q ss_pred ccccccCCccccccccccccccccccCCCCCC-CCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccC-C
Q 002349 317 NQLTGHIPPALGKLTDLFDLNVANNHLEGPIP-DNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRG-P 394 (933)
Q Consensus 317 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~ 394 (933)
|.++ .+|..+..+++|++|++++|++.+..+ ..+..+++|++|++++|++.+..+..|..+++|++|++++|.+++ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 9888 466678888899999999998886554 578888999999999999988888888899999999999999986 5
Q ss_pred CccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccc
Q 002349 395 IPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQL 474 (933)
Q Consensus 395 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 474 (933)
.|..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 78888899999999999999998888899999999999999999998888889999999999999999999999889888
Q ss_pred c-ccceeeecCCCCcCccc
Q 002349 475 Q-NMFSLRLDYNNLSGDVM 492 (933)
Q Consensus 475 ~-~L~~L~l~~N~l~~~~~ 492 (933)
+ +|++|+|++|+++|...
T Consensus 247 ~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 247 PSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CTTCCEEECTTCCEECSGG
T ss_pred hccCCEEEccCCCeecccC
Confidence 5 89999999999988643
No 306
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=8.4e-29 Score=284.23 Aligned_cols=249 Identities=28% Similarity=0.349 Sum_probs=187.1
Q ss_pred cceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeecc
Q 002349 237 IATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELND 316 (933)
Q Consensus 237 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 316 (933)
...++..++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456777777777 3555443 5778888888888877777888888888888888888877677788888888888888
Q ss_pred ccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCc-ccCCCCCcccccccccceecCCcccccCCC
Q 002349 317 NQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGN-KLNGTIPPAFQRLESMTYLNLSLNNIRGPI 395 (933)
Q Consensus 317 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 395 (933)
|++++..+..|..+++|++|+|++|++....+..|..+++|+.|++++| .+....+..|.++++|++|+|++|+++. +
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-I 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-C
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-c
Confidence 8888666667788888888888888887666667778888888888874 4444444567778888888888888773 3
Q ss_pred ccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhcccc
Q 002349 396 PVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQ 475 (933)
Q Consensus 396 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 475 (933)
| .+..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|.++++|+.|+|++|+|++..+..+..++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 3 467777788888888888777777777788888888888888877777777788888888888888777777777777
Q ss_pred ccceeeecCCCCcCc
Q 002349 476 NMFSLRLDYNNLSGD 490 (933)
Q Consensus 476 ~L~~L~l~~N~l~~~ 490 (933)
+|+.|+|++|+|.|+
T Consensus 280 ~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 280 HLERIHLHHNPWNCN 294 (440)
T ss_dssp TCCEEECCSSCEECS
T ss_pred CCCEEEcCCCCccCC
Confidence 777777766655543
No 307
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=6.3e-29 Score=285.30 Aligned_cols=248 Identities=22% Similarity=0.259 Sum_probs=123.4
Q ss_pred cEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccccccccccccccc
Q 002349 262 AVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANN 341 (933)
Q Consensus 262 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 341 (933)
..++.+++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 34455555554 2333322 34455555555555444455555555555555555555444445555555555555555
Q ss_pred cCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcc-cccCCCccccccccccceeeccCCccCCCCC
Q 002349 342 HLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLN-NIRGPIPVELSRIGNLDTLDMSNNKISGSIP 420 (933)
Q Consensus 342 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 420 (933)
++++..+..|..+++|++|++++|+++...+..|..+++|++|+|++| .+....+..|..+++|+.|+|++|+++ .+|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence 555444444555555555555555555444445555555555555552 233222334455555555555555554 233
Q ss_pred CCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcccch-hhccc
Q 002349 421 SPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSL-INCLS 499 (933)
Q Consensus 421 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~ 499 (933)
.+..+++|+.|+|++|+|++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++.++.. ..+..
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 2445555555555555555555555555555555555555555555555555555555555555555444332 22333
Q ss_pred cc-eeecCCCCCCCcc
Q 002349 500 LS-VLFIGNPGLCGYW 514 (933)
Q Consensus 500 ~~-~~~~~N~~~C~~~ 514 (933)
+. +.+.+|||.|+|.
T Consensus 281 L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 281 LERIHLHHNPWNCNCD 296 (440)
T ss_dssp CCEEECCSSCEECSST
T ss_pred CCEEEcCCCCccCCCC
Confidence 33 4445555555553
No 308
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=5.3e-29 Score=286.97 Aligned_cols=231 Identities=27% Similarity=0.314 Sum_probs=151.4
Q ss_pred ccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCcccccccccccccc
Q 002349 259 QALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNV 338 (933)
Q Consensus 259 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 338 (933)
++|+.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 35555666666665555555666666666666666666555555666666666666666666555555556666666666
Q ss_pred ccccCCCCCCCCcccCCCCCceeccCc-ccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCC
Q 002349 339 ANNHLEGPIPDNLSSCTNLNSLNVHGN-KLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISG 417 (933)
Q Consensus 339 ~~N~l~~~~p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 417 (933)
++|++....+..|..+++|+.|++++| .+....+..|.++++|++|+|++|++++. | .+..+++|+.|+|++|+|++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 666665555555666666666666663 33333334566666777777777776643 2 46667777777777777777
Q ss_pred CCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcc
Q 002349 418 SIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDV 491 (933)
Q Consensus 418 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 491 (933)
..|..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..+..+++|+.|+|++|+|.|+.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 77777777777777777777777777777777777777777777777766677777777777777777776654
No 309
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.1e-28 Score=284.34 Aligned_cols=251 Identities=22% Similarity=0.236 Sum_probs=225.9
Q ss_pred cccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccccccccccccc
Q 002349 260 ALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVA 339 (933)
Q Consensus 260 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~ 339 (933)
....++.+++.++ .+|..+. ++++.|+|++|+|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4567888888888 4555443 689999999999999889999999999999999999999988999999999999999
Q ss_pred cccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCc-ccccCCCccccccccccceeeccCCccCCC
Q 002349 340 NNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSL-NNIRGPIPVELSRIGNLDTLDMSNNKISGS 418 (933)
Q Consensus 340 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 418 (933)
+|++++..+..|..+++|++|+|++|+++...+..|.++++|++|++++ |.+....+..|..+++|+.|+|++|++++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9999988888899999999999999999987788999999999999999 456555556799999999999999999954
Q ss_pred CCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcccch-hhc
Q 002349 419 IPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSL-INC 497 (933)
Q Consensus 419 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~ 497 (933)
| .+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++.++.. ..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 4 5889999999999999999999999999999999999999999999999999999999999999999887654 445
Q ss_pred cccc-eeecCCCCCCCccc
Q 002349 498 LSLS-VLFIGNPGLCGYWL 515 (933)
Q Consensus 498 ~~~~-~~~~~N~~~C~~~l 515 (933)
..+. +.+.+|||.|+|.+
T Consensus 290 ~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp TTCCEEECCSSCEECSTTT
T ss_pred cCCCEEEccCCCcCCCCCc
Confidence 6666 77899999999965
No 310
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.4e-28 Score=270.34 Aligned_cols=227 Identities=18% Similarity=0.259 Sum_probs=174.2
Q ss_pred ccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCcccccccccccccc
Q 002349 259 QALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNV 338 (933)
Q Consensus 259 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 338 (933)
.+++.|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+.++++|++|+|++|+++ .+|..++.+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 44555555555555 44445555555555555555555 45555555555555555555555 44555555555555566
Q ss_pred ccccCCCCCCCCcc---------cCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceee
Q 002349 339 ANNHLEGPIPDNLS---------SCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLD 409 (933)
Q Consensus 339 ~~N~l~~~~p~~l~---------~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 409 (933)
++|++.+.+|..+. ++++|++|++++|+++ .+|..|..+++|++|+|++|++++ +|..+..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 55555555555544 5899999999999998 788889999999999999999995 566789999999999
Q ss_pred ccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcC
Q 002349 410 MSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSG 489 (933)
Q Consensus 410 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 489 (933)
|++|.+.+.+|..|..+++|+.|+|++|++.+.+|..+.++++|++|+|++|++.+.+|..+..+++|+.+++..|.+..
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876654
Q ss_pred c
Q 002349 490 D 490 (933)
Q Consensus 490 ~ 490 (933)
.
T Consensus 316 l 316 (328)
T 4fcg_A 316 L 316 (328)
T ss_dssp -
T ss_pred H
Confidence 3
No 311
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=9e-30 Score=278.10 Aligned_cols=247 Identities=23% Similarity=0.288 Sum_probs=145.5
Q ss_pred CCCCCccEEEccCCcccccCCCCccCCCCCceeccccccc-CCCCCcccc-------cccchhhhhhcccCccCCCCccc
Q 002349 89 GDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNEL-YGDIPFSIS-------KLKQLEFLILKNNQLIGPIPSTL 160 (933)
Q Consensus 89 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~l 160 (933)
+..++|++|++++|.+ .+|..+... |++|+|++|.+ .+.+|..+. ++++|++|+|++|++++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3455677777777777 567666554 77777777777 445666555 67777777777777777777765
Q ss_pred --ccCCCCceeeeecCCCCCCcccccccC-----CCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCC--CC
Q 002349 161 --SQLPNLKVFGLRGNNLVGTLSPDMCQL-----SGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIP--FN 231 (933)
Q Consensus 161 --~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p--~~ 231 (933)
+.+++|++|+|++|++++. |..+..+ ++|++|+|++|++++..|..++++++|++|+|++|++.+.++ ..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 7777777777777777766 6666666 777777777777777666777777777777777777654321 11
Q ss_pred ---ccccccceEecccccccc---ccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCcccc
Q 002349 232 ---IGFLQIATLSLQGNQLTG---KIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGN 305 (933)
Q Consensus 232 ---~~~~~L~~L~L~~n~l~~---~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 305 (933)
....+|++|+|++|++++ .....+..+++|++|+|++|++++..|. ..+..
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----------------------~~~~~ 251 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA-----------------------PSCDW 251 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC-----------------------SCCCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch-----------------------hhhhh
Confidence 112244444444444441 1112223344555555555555443321 23333
Q ss_pred CCcceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccC
Q 002349 306 MTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLN 368 (933)
Q Consensus 306 l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 368 (933)
+++|++|+|++|+|+ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|+++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 444555555555554 3344333 4555555555555433 33 555555555555555554
No 312
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=6.9e-29 Score=293.17 Aligned_cols=287 Identities=28% Similarity=0.334 Sum_probs=151.7
Q ss_pred CCcCCCCCCCCCCCCCccceE--------ecCCCCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCcc
Q 002349 42 NVLYDWTDSPSSDYCVWRGIT--------CDNVTFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIG 113 (933)
Q Consensus 42 ~~l~~w~~~~~~~~c~w~gv~--------C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 113 (933)
...++|.. ..+||.|+|.. |.. ..++.|++++++++ .+|..+. ++|++|+|++|+|+ .+|.
T Consensus 10 ~~w~~W~~--~~~~~~~~~r~~~~~~~~~c~~--~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~--- 78 (622)
T 3g06_A 10 AVWSAWRR--AAPAEESRGRAAVVQKMRACLN--NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA--- 78 (622)
T ss_dssp CHHHHHHH--TCCGGGHHHHHHHHHHHHHHHH--HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---
T ss_pred HHHHHHHh--cCCcchhccccccCcccccccC--CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---
Confidence 44567864 35789997643 322 23567777777777 6666555 67777777777777 4555
Q ss_pred CCCCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEE
Q 002349 114 DCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYF 193 (933)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 193 (933)
.+++|++|+|++|.|+ .+|. .+++|++|+|++|++++ +|. .+++|+.|+|++|++++ +|.. +++|++|
T Consensus 79 ~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L 146 (622)
T 3g06_A 79 LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQEL 146 (622)
T ss_dssp CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEE
Confidence 4567777777777776 4554 45666666666666664 333 34556666666665553 2221 2444444
Q ss_pred eccCccccCccCcCCcCCCCCcEEccccccccCcCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcC
Q 002349 194 DVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSG 273 (933)
Q Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 273 (933)
+|++|.+++ +|. .+++|+.|++++|+ +++ +| ..+++|+.|+|++|.+++
T Consensus 147 ~Ls~N~l~~-l~~---~~~~L~~L~L~~N~-----------------------l~~-l~---~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 147 SVSDNQLAS-LPA---LPSELCKLWAYNNQ-----------------------LTS-LP---MLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSC-----------------------CSC-CC---CCCTTCCEEECCSSCCSC
T ss_pred ECcCCcCCC-cCC---ccCCCCEEECCCCC-----------------------CCC-Cc---ccCCCCcEEECCCCCCCC
Confidence 444444442 222 12233444444443 332 22 234556666666666653
Q ss_pred CCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccccccccccccccccCCCCCCCCccc
Q 002349 274 PIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSS 353 (933)
Q Consensus 274 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 353 (933)
+|.. +++|+.|++++|.++. +|.. +++|+.|+|++|+|++ +| ..+++|+.|++++|+|+ .+|. .
T Consensus 196 -l~~~---~~~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~ 259 (622)
T 3g06_A 196 -LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---L 259 (622)
T ss_dssp -CCCC---CTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---C
T ss_pred -CCCc---cchhhEEECcCCcccc-cCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---c
Confidence 2222 2456666666666652 3322 2455666666665553 33 23345555555555554 2332 3
Q ss_pred CCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCcccc
Q 002349 354 CTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVEL 399 (933)
Q Consensus 354 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 399 (933)
+++|+.|+|++|+|+ .+|..|.++++|+.|+|++|.+++..|..+
T Consensus 260 ~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 260 PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp CTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred cccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 344555555555554 334444444555555555554444444433
No 313
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.4e-28 Score=263.32 Aligned_cols=210 Identities=25% Similarity=0.336 Sum_probs=123.1
Q ss_pred CCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCcccccccccccccccccc-CCCCCCCCcccCCCCCcee
Q 002349 283 SYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNH-LEGPIPDNLSSCTNLNSLN 361 (933)
Q Consensus 283 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~ 361 (933)
++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|+ +....|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 345555555555554444445555555555555555554445555555555555555554 4444455555555555566
Q ss_pred ccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCccccc
Q 002349 362 VHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTG 441 (933)
Q Consensus 362 l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 441 (933)
+++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 66655555555555556666666666666655555555566666666666666665444556666666666666666666
Q ss_pred ccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCccc
Q 002349 442 FIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVM 492 (933)
Q Consensus 442 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 492 (933)
..|..|.++++|+.|+|++|++++..+..+..+++|+.|++++|++.|..+
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 666666666666666666666666555556666666666666666666544
No 314
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.3e-29 Score=276.96 Aligned_cols=251 Identities=21% Similarity=0.204 Sum_probs=146.8
Q ss_pred CcCCCCCcEEccccccccCcCCCCccccccceEecccccc-ccccCcccc-------ccccccEEeccCCcCcCCCCCCC
Q 002349 208 IGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQL-TGKIPSVIG-------LMQALAVLDLSCNMLSGPIPPIL 279 (933)
Q Consensus 208 l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l-~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~~~~~ 279 (933)
++..++|+.|++++|.+ .+|..+... ++.|+|++|++ .+.+|..+. .+++|++|+|++|.+++.+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI-IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH-HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH-HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 45556677777777777 455444332 66666666666 334555444 56677777777777776666655
Q ss_pred --CCCCCccEEEeeCCccCCCCCCccccC-----CcceEeeeccccccccCCccccccccccccccccccCCCCCCCCcc
Q 002349 280 --GNLSYTEKLYLHSNKLTGHIPPELGNM-----TKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLS 352 (933)
Q Consensus 280 --~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 352 (933)
+.+++|++|+|++|++++. |..+..+ ++|++|+|++|++++..|..|+.+++|++|++++|++.+.++
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---- 190 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG---- 190 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH----
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH----
Confidence 6667777777777777655 5555555 566666666666665555555555555555555555433210
Q ss_pred cCCCCCceeccCcccCCCCCccc--ccccccceecCCcccccCC---CccccccccccceeeccCCccCCCCC-CCCCCc
Q 002349 353 SCTNLNSLNVHGNKLNGTIPPAF--QRLESMTYLNLSLNNIRGP---IPVELSRIGNLDTLDMSNNKISGSIP-SPLGDL 426 (933)
Q Consensus 353 ~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l 426 (933)
.+..+ ..+++|++|+|++|++++. ....+..+++|+.|+|++|++++.+| ..+..+
T Consensus 191 ------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 191 ------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp ------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred ------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 11112 4445555555555555421 11223345566666666666665553 344456
Q ss_pred cccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcC
Q 002349 427 EHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSG 489 (933)
Q Consensus 427 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 489 (933)
++|++|+|++|+|+ .+|..+. ++|++|||++|+|++. |. +..+++|++|+|++|++++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 66666666666666 4555554 6667777777777655 44 6666777777777776664
No 315
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.8e-28 Score=262.85 Aligned_cols=252 Identities=22% Similarity=0.222 Sum_probs=198.3
Q ss_pred eEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeecccc
Q 002349 239 TLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQ 318 (933)
Q Consensus 239 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 318 (933)
+++++++.++. +|..+ .++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 34444444442 33322 3577778888888777666777788888888888888877767778888888888888886
Q ss_pred -ccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCcc
Q 002349 319 -LTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPV 397 (933)
Q Consensus 319 -l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 397 (933)
++...|..+..+++|++|++++|++.+..|..+..+++|++|++++|++++..+..|..+++|++|+|++|++++..+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 7766677788888888888888888877777888888888888888888877777788888899999999988877667
Q ss_pred ccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhcccccc
Q 002349 398 ELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNM 477 (933)
Q Consensus 398 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 477 (933)
.+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|++.+..+.. .....+
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l 250 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWL 250 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHH
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHH
Confidence 7888899999999999999888899999999999999999999887788999999999999999998655432 233556
Q ss_pred ceeeecCCCCcCcccch
Q 002349 478 FSLRLDYNNLSGDVMSL 494 (933)
Q Consensus 478 ~~L~l~~N~l~~~~~~~ 494 (933)
+.+..+.|.+.|..|..
T Consensus 251 ~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 251 QKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp HHCCSEECCCBEEESGG
T ss_pred HhcccccCccccCCchH
Confidence 66778888888876653
No 316
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.6e-31 Score=317.93 Aligned_cols=414 Identities=11% Similarity=0.077 Sum_probs=309.2
Q ss_pred cEEEEEcCCCCc---CcccCCCCC------------CCCCccEEEccCCcccccCCCCccCC--CCCceecccccc-cCC
Q 002349 69 TVIALNLSGLNL---DGEISPAVG------------DLKDLQSIDLRGNRLSGQIPDEIGDC--SSLKSLDLSFNE-LYG 130 (933)
Q Consensus 69 ~v~~l~l~~~~l---~~~~~~~l~------------~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~-l~~ 130 (933)
++..|+|+++.. .|.+|..++ .+++|++|+|++|.+++..+..++.+ .+|++|+|++|. ++.
T Consensus 74 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~ 153 (592)
T 3ogk_B 74 NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTT 153 (592)
T ss_dssp TCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEH
T ss_pred CCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCH
Confidence 477888877532 234444444 78999999999999987777777764 459999999987 221
Q ss_pred -CCCcccccccchhhhhhcccCccCC----CCcccccCCCCceeeeecCCCCC----CcccccccCCCCcEEeccCcccc
Q 002349 131 -DIPFSISKLKQLEFLILKNNQLIGP----IPSTLSQLPNLKVFGLRGNNLVG----TLSPDMCQLSGLWYFDVRNNSLT 201 (933)
Q Consensus 131 -~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~ 201 (933)
.++..+.++++|++|+|++|.+++. ++..+..+++|++|+|++|.+++ .++..+.++++|++|++++|.+.
T Consensus 154 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 154 DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 1222335789999999999999876 44456789999999999999973 34445678899999999999998
Q ss_pred CccCcCCcCCCCCcEEcccccccc---CcCCCCcc-ccccceEeccccccccccCccccccccccEEeccCCcCcCCCC-
Q 002349 202 GSIPQNIGNCTSFQVLDLSYNQLS---GEIPFNIG-FLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIP- 276 (933)
Q Consensus 202 ~~~p~~l~~l~~L~~L~L~~N~l~---~~~p~~~~-~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~- 276 (933)
+ +|..+.++++|++|+++.+... +..+..+. ..+|+.|+++++. .+.+|..+..+++|++|+|++|.+++...
T Consensus 234 ~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~ 311 (592)
T 3ogk_B 234 E-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHC 311 (592)
T ss_dssp G-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHH
T ss_pred H-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHH
Confidence 6 7788999999999999864432 12222222 3478999998864 34678888899999999999999765433
Q ss_pred CCCCCCCCccEEEeeCCccC-CCCCCccccCCcceEeeec-----------cccccccCCc-cccccccccccccccccC
Q 002349 277 PILGNLSYTEKLYLHSNKLT-GHIPPELGNMTKLHYLELN-----------DNQLTGHIPP-ALGKLTDLFDLNVANNHL 343 (933)
Q Consensus 277 ~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~L~-----------~N~l~~~~~~-~l~~l~~L~~L~L~~N~l 343 (933)
..+..+++|++|+++ +.+. +.++..+..+++|++|+++ .|.+++.... ....+++|++|+++.|.+
T Consensus 312 ~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l 390 (592)
T 3ogk_B 312 TLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390 (592)
T ss_dssp HHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCC
T ss_pred HHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCc
Confidence 346789999999999 4444 3344445678999999999 3677644222 245589999999999999
Q ss_pred CCCCCCCccc-CCCCCceecc----CcccCCC-----CCcccccccccceecCCcc--cccCCCcccccc-ccccceeec
Q 002349 344 EGPIPDNLSS-CTNLNSLNVH----GNKLNGT-----IPPAFQRLESMTYLNLSLN--NIRGPIPVELSR-IGNLDTLDM 410 (933)
Q Consensus 344 ~~~~p~~l~~-l~~L~~L~l~----~N~l~~~-----~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~-l~~L~~L~L 410 (933)
++..+..+.. +++|+.|+++ .|++++. ++..+.++++|++|++++| .+++..+..+.. +++|++|+|
T Consensus 391 ~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L 470 (592)
T 3ogk_B 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470 (592)
T ss_dssp CHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEE
T ss_pred cHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeec
Confidence 8766666665 8999999996 7788864 3344777999999999854 366555555543 889999999
Q ss_pred cCCccCCC-CCCCCCCccccccccccCcccccc-cccccccccccceEEccCCccccccchhh-ccccccceeeecCC
Q 002349 411 SNNKISGS-IPSPLGDLEHLLKLNLSRNQLTGF-IPGEFGNLRSVMEIDLSHNHLTGVIPEEL-SQLQNMFSLRLDYN 485 (933)
Q Consensus 411 s~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N 485 (933)
++|.+++. ++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|++++.-...+ ..++.+....+..+
T Consensus 471 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 471 GYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 99999863 445567889999999999998855 44455789999999999999987644333 35666655555443
No 317
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.95 E-value=7e-29 Score=291.35 Aligned_cols=184 Identities=16% Similarity=0.088 Sum_probs=130.2
Q ss_pred eecccceeEEEEE-EcCCceEEEEEecccC----------chhHHHHHHHHHHHhcC-CCCceeeeeeEEecCCccEEEE
Q 002349 606 IGYGASSTVYKCV-LKNCKPVAIKRLYSHY----------PQCLKEFETELETVGSI-KHRNLVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 606 lG~G~~g~Vy~~~-~~~~~~vavK~~~~~~----------~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv~ 673 (933)
.+.|+.|.+..++ .-.|+.+|||.+.... ....++|.+|+++|+++ .|+||+++++++.+++..||||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM 321 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM 321 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence 5667777666655 3347889999996542 12346799999999999 7999999999999999999999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccC
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVS 753 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~ 753 (933)
||++|++|.+++. ..++++.. +|+.||+.||+|+|++ |||||||||+|||++++|.+||+|||+|+.....
T Consensus 322 Eyv~G~~L~d~i~---~~~~l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~ 392 (569)
T 4azs_A 322 EKLPGRLLSDMLA---AGEEIDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD 392 (569)
T ss_dssp ECCCSEEHHHHHH---TTCCCCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCCTTEESCC--
T ss_pred ecCCCCcHHHHHH---hCCCCCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeecccCeeCCCC
Confidence 9999999999995 45667654 5889999999999976 9999999999999999999999999999876433
Q ss_pred CCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCC
Q 002349 754 KSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKA 800 (933)
Q Consensus 754 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p 800 (933)
. ......+||++|||||++.+. +..++|+||+|++++++.++..+
T Consensus 393 ~-~~~~t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 393 C-SWPTNLVQSFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp --CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred C-ccccCceechhhccHHHhCCC-CCCcccccccccchhhhccccch
Confidence 2 233456899999999999764 67789999999998887665443
No 318
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=9.6e-27 Score=274.86 Aligned_cols=268 Identities=27% Similarity=0.356 Sum_probs=160.5
Q ss_pred chhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccc
Q 002349 141 QLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLS 220 (933)
Q Consensus 141 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (933)
+++.|++++|.++ .+|..+. ++|+.|+|++|+++ .+|. .+++|++|+|++|+++ .+|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 4677777777777 5666554 67777777777776 3333 4566666666666666 3444 45666666666
Q ss_pred cccccCcCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCC
Q 002349 221 YNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIP 300 (933)
Q Consensus 221 ~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 300 (933)
+|++++ +|. .+++|+.|++++|++++ +|.. +++|++|+|++|++++ +|
T Consensus 110 ~N~l~~-l~~--------------------------~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~ 157 (622)
T 3g06_A 110 SNPLTH-LPA--------------------------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LP 157 (622)
T ss_dssp SCCCCC-CCC--------------------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CC
T ss_pred CCcCCC-CCC--------------------------CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cC
Confidence 666653 221 23445555555555553 2222 2555555555555553 23
Q ss_pred CccccCCcceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccc
Q 002349 301 PELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLES 380 (933)
Q Consensus 301 ~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 380 (933)
. .+++|+.|++++|+|++ +| ..+++|+.|++++|++++ +|.. +++|+.|++++|+++. +|.. +++
T Consensus 158 ~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~~---~~~ 222 (622)
T 3g06_A 158 A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSG 222 (622)
T ss_dssp C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCC---CTT
T ss_pred C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCCC---CCC
Confidence 2 23455566666666653 33 234556666666666653 3322 3566666666666663 3322 356
Q ss_pred cceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccC
Q 002349 381 MTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSH 460 (933)
Q Consensus 381 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 460 (933)
|++|+|++|++++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..|.++++|+.|+|++
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence 7777777777764 33 34466777777777777 3444 4566777777777777 5577777777777777777
Q ss_pred Cccccccchhhcccc
Q 002349 461 NHLTGVIPEELSQLQ 475 (933)
Q Consensus 461 N~l~~~~p~~~~~l~ 475 (933)
|++++.+|..+..++
T Consensus 294 N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 294 NPLSERTLQALREIT 308 (622)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHhcc
Confidence 777777777666655
No 319
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.5e-29 Score=272.55 Aligned_cols=248 Identities=21% Similarity=0.245 Sum_probs=136.7
Q ss_pred cCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCCCCccccccceEe
Q 002349 162 QLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLS 241 (933)
Q Consensus 162 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~ 241 (933)
.+++|++|+|++|++++..|..|..+++|++|+|++|.+++..+ +..+++|++|+|++|++++..
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~------------- 96 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL------------- 96 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-------------
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-------------
Confidence 34445555555555554444445555555555555555554333 555566666666655554211
Q ss_pred ccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccc
Q 002349 242 LQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTG 321 (933)
Q Consensus 242 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 321 (933)
..++|++|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|+|++|++++
T Consensus 97 ---------------~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 97 ---------------VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp ---------------ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred ---------------CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 1134555555555554433322 3455666666666665555556666666666666666665
Q ss_pred cCCcccc-ccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccc
Q 002349 322 HIPPALG-KLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELS 400 (933)
Q Consensus 322 ~~~~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 400 (933)
..+..+. .+++|++|++++|++++. + ....+++|++|+|++|++++. |..+.
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~-------------------------~~~~l~~L~~L~Ls~N~l~~l-~~~~~ 211 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-K-------------------------GQVVFAKLKTLDLSSNKLAFM-GPEFQ 211 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-E-------------------------CCCCCTTCCEEECCSSCCCEE-CGGGG
T ss_pred ccHHHHhhccCcCCEEECCCCcCccc-c-------------------------cccccccCCEEECCCCcCCcc-hhhhc
Confidence 5444442 445555555555555422 1 111244555555555555532 33355
Q ss_pred cccccceeeccCCccCCCCCCCCCCccccccccccCcccc-cccccccccccccceEEcc-CCccccccchh
Q 002349 401 RIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLT-GFIPGEFGNLRSVMEIDLS-HNHLTGVIPEE 470 (933)
Q Consensus 401 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls-~N~l~~~~p~~ 470 (933)
.+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|.++ +.+|..+..+++|+.|+++ .+.++|..|..
T Consensus 212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 6666666666666666 45666677777777777777777 6667777777777777777 33566655543
No 320
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=4.7e-29 Score=273.08 Aligned_cols=257 Identities=21% Similarity=0.201 Sum_probs=133.1
Q ss_pred ccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeec
Q 002349 94 LQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRG 173 (933)
Q Consensus 94 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 173 (933)
++.++++.+.+...++..+..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..| ++.+++|++|+|++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3445555555543333334445566666666666655555555555555555555555554332 55555555555555
Q ss_pred CCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCCCCccccccceEeccccccccccCc
Q 002349 174 NNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPS 253 (933)
Q Consensus 174 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~ 253 (933)
|+++ +.. ..++|++|++++|++++..+.. ..+|++|++++|++++..+.
T Consensus 90 n~l~------------------------~l~-----~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~ 138 (317)
T 3o53_A 90 NYVQ------------------------ELL-----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDL 138 (317)
T ss_dssp SEEE------------------------EEE-----ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGB
T ss_pred Cccc------------------------ccc-----CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccch
Confidence 5544 211 2245555555555554322221 12344444444444444444
Q ss_pred cccccccccEEeccCCcCcCCCCCCCC-CCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCcccccccc
Q 002349 254 VIGLMQALAVLDLSCNMLSGPIPPILG-NLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTD 332 (933)
Q Consensus 254 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~ 332 (933)
.++.+++|++|+|++|.+++..+..+. .+++|++|+|++|.+++. + ....+++|++|+|++|++++. |..+..+++
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~ 215 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAG 215 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTT
T ss_pred hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCc
Confidence 555566666666666666655444442 456666666666666533 2 122355666666666666532 333555555
Q ss_pred ccccccccccCCCCCCCCcccCCCCCceeccCcccC-CCCCcccccccccceecCC
Q 002349 333 LFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLN-GTIPPAFQRLESMTYLNLS 387 (933)
Q Consensus 333 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~L~ 387 (933)
|+.|++++|+++ .+|..+..+++|+.|++++|++. +.++..+..+++|+.|+++
T Consensus 216 L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred ccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 666666666555 34445555555555555555555 4444455555555555554
No 321
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.7e-27 Score=274.16 Aligned_cols=234 Identities=20% Similarity=0.212 Sum_probs=188.4
Q ss_pred ccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeec
Q 002349 236 QIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELN 315 (933)
Q Consensus 236 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 315 (933)
+|++|+|++|++++..|..|+.+++|++|+|++|.+++..| |+.+++|++|+|++|.|++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 34455555555555556677778888888888888876655 778888888888888887432 23788888888
Q ss_pred cccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccc-cccccceecCCcccccCC
Q 002349 316 DNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQ-RLESMTYLNLSLNNIRGP 394 (933)
Q Consensus 316 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~ 394 (933)
+|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|+|++|++++.+|..|. .+++|++|+|++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 8888876554 356788888888888888788888889999999999999887887776 789999999999999866
Q ss_pred CccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccc-cccchhhcc
Q 002349 395 IPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLT-GVIPEELSQ 473 (933)
Q Consensus 395 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~ 473 (933)
.+ +..+++|+.|+|++|.|++. |..+..+++|+.|+|++|.|++ +|..+..+++|+.|++++|.+. +.+|..+..
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred cc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 32 34588999999999999964 4458899999999999999995 6888999999999999999998 778888888
Q ss_pred ccccceeeec
Q 002349 474 LQNMFSLRLD 483 (933)
Q Consensus 474 l~~L~~L~l~ 483 (933)
++.|+.++++
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 9888887775
No 322
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=7.3e-26 Score=241.67 Aligned_cols=169 Identities=25% Similarity=0.247 Sum_probs=109.1
Q ss_pred CCCCCccceEecCCCCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCC
Q 002349 53 SDYCVWRGITCDNVTFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDI 132 (933)
Q Consensus 53 ~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 132 (933)
.++|.|.|+.|+-. ..+..+++++++++ .+|..+. ++|++|+|++|++++..+..|+++++|++|+|++|.++...
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 47899999888532 23446788888888 4665554 57888888888888655567888888888888888877444
Q ss_pred CcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCC
Q 002349 133 PFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCT 212 (933)
Q Consensus 133 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 212 (933)
+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 44456677777777777777655555566666666666666666655544555555555555555555543333344444
Q ss_pred CCcEEcccccccc
Q 002349 213 SFQVLDLSYNQLS 225 (933)
Q Consensus 213 ~L~~L~L~~N~l~ 225 (933)
+|++|+|++|+++
T Consensus 158 ~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 158 SLKELRLYNNQLK 170 (270)
T ss_dssp TCCEEECCSSCCS
T ss_pred ccceeEecCCcCc
Confidence 4444444444443
No 323
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=7.9e-26 Score=242.40 Aligned_cols=212 Identities=23% Similarity=0.233 Sum_probs=121.2
Q ss_pred ccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCcccccccccccccc
Q 002349 259 QALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNV 338 (933)
Q Consensus 259 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 338 (933)
++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 34566666666665555555555555666666555555444445555555555555555555554455555555555555
Q ss_pred ccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCC
Q 002349 339 ANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGS 418 (933)
Q Consensus 339 ~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 418 (933)
++|++.+..+..+..+++|++|++++|++++. .+|..+..+++|+.|+|++|++++.
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSF-----------------------KLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------------------CCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCchhcccCCCCCEEECcCCcccee-----------------------cCchhhccCCCCCEEECCCCCCCcC
Confidence 55555544444444555555555555554432 1244444455555555555555544
Q ss_pred CCCCCCCccccc----cccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcccch
Q 002349 419 IPSPLGDLEHLL----KLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSL 494 (933)
Q Consensus 419 ~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 494 (933)
.+..|..+++|+ .|++++|++++..+..+.. .+|+.|+|++|++++..+..+..+++|+.|+|++|+|+|..+.+
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 444444444444 5667777777555554443 36777777777777666666777778888888877777766543
No 324
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=8.7e-30 Score=304.79 Aligned_cols=425 Identities=15% Similarity=0.146 Sum_probs=278.4
Q ss_pred CCCccceEecCCCCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccc---cCCCC------------ccCCCCCc
Q 002349 55 YCVWRGITCDNVTFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSG---QIPDE------------IGDCSSLK 119 (933)
Q Consensus 55 ~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~---~~p~~------------l~~l~~L~ 119 (933)
|++|+++... ....++++++.-. .....+..+++|++|+|+++.... ..|.. ...+++|+
T Consensus 34 ck~W~~~~~~----~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~ 108 (594)
T 2p1m_B 34 CKSWYEIERW----CRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE 108 (594)
T ss_dssp CHHHHHHHHH----HCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred HHHHHHhhhh----hceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCC
Confidence 4578887221 1224444443211 111235567778888888765221 22221 24577888
Q ss_pred eecccccccCCCCCcccc-cccchhhhhhccc-CccCC-CCcccccCCCCceeeeecCCCCCCcccccc----cCCCCcE
Q 002349 120 SLDLSFNELYGDIPFSIS-KLKQLEFLILKNN-QLIGP-IPSTLSQLPNLKVFGLRGNNLVGTLSPDMC----QLSGLWY 192 (933)
Q Consensus 120 ~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~----~l~~L~~ 192 (933)
+|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .+++|++
T Consensus 109 ~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~ 188 (594)
T 2p1m_B 109 EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188 (594)
T ss_dssp EEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCE
T ss_pred eEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcE
Confidence 888888888776666665 6788888888888 44432 344455788888888888887765544443 5568888
Q ss_pred EeccCcc--ccC-ccCcCCcCCCCCcEEccccc-cccCcCCCCcc-ccccceEec-------cccccccccCcccccccc
Q 002349 193 FDVRNNS--LTG-SIPQNIGNCTSFQVLDLSYN-QLSGEIPFNIG-FLQIATLSL-------QGNQLTGKIPSVIGLMQA 260 (933)
Q Consensus 193 L~L~~n~--l~~-~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~-~~~L~~L~L-------~~n~l~~~~p~~~~~l~~ 260 (933)
|++++|. ++. .++..+.++++|++|++++| .+++ +|..+. ..+|++|++ ..|.+.+ ++..+..+++
T Consensus 189 L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~ 266 (594)
T 2p1m_B 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKE 266 (594)
T ss_dssp EECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTT
T ss_pred EEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCC
Confidence 8888886 221 11222345688888888887 3333 333332 346777874 4444554 3446788888
Q ss_pred ccEE-eccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCC-CccccCCcceEeeecccccccc-CCccccccccccccc
Q 002349 261 LAVL-DLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIP-PELGNMTKLHYLELNDNQLTGH-IPPALGKLTDLFDLN 337 (933)
Q Consensus 261 L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~ 337 (933)
|+.| .+..... +.++..+..+++|++|+|++|.+++... ..+..+++|+.|++++| ++.. ++.....+++|+.|+
T Consensus 267 L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~ 344 (594)
T 2p1m_B 267 LRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELR 344 (594)
T ss_dssp CCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE
T ss_pred cccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEE
Confidence 8888 4443332 2344455577899999999998764322 23567889999999988 4432 222233578899998
Q ss_pred ccc---------ccCCCCCCCCcc-cCCCCCceeccCcccCCCCCcccc-cccccceecCC--c----ccccCCC-----
Q 002349 338 VAN---------NHLEGPIPDNLS-SCTNLNSLNVHGNKLNGTIPPAFQ-RLESMTYLNLS--L----NNIRGPI----- 395 (933)
Q Consensus 338 L~~---------N~l~~~~p~~l~-~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~L~--~----N~l~~~~----- 395 (933)
+.+ +.+++.....+. .+++|+.|.++.|++++.....+. .+++|+.|+++ + |.++...
T Consensus 345 L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~ 424 (594)
T 2p1m_B 345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424 (594)
T ss_dssp EECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH
T ss_pred EecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHH
Confidence 843 344432222222 478999999988988865555554 58899999998 4 5565321
Q ss_pred ccccccccccceeeccCCccCCCCCCCCCC-ccccccccccCccccccccccc-ccccccceEEccCCccccccch-hhc
Q 002349 396 PVELSRIGNLDTLDMSNNKISGSIPSPLGD-LEHLLKLNLSRNQLTGFIPGEF-GNLRSVMEIDLSHNHLTGVIPE-ELS 472 (933)
Q Consensus 396 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~ 472 (933)
+..+..+++|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++..+..+ .++++|++|+|++|++++.... ...
T Consensus 425 ~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~ 503 (594)
T 2p1m_B 425 GAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503 (594)
T ss_dssp HHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGG
T ss_pred HHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHH
Confidence 22356788999999987 666554445554 7889999999999987666555 6789999999999999765554 445
Q ss_pred cccccceeeecCCCCcC
Q 002349 473 QLQNMFSLRLDYNNLSG 489 (933)
Q Consensus 473 ~l~~L~~L~l~~N~l~~ 489 (933)
.+++|+.|++++|+++.
T Consensus 504 ~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 504 KLETMRSLWMSSCSVSF 520 (594)
T ss_dssp GGGGSSEEEEESSCCBH
T ss_pred hCCCCCEEeeeCCCCCH
Confidence 68999999999999843
No 325
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=3e-25 Score=237.82 Aligned_cols=230 Identities=27% Similarity=0.286 Sum_probs=186.7
Q ss_pred EEccccccccCcCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCcc
Q 002349 216 VLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKL 295 (933)
Q Consensus 216 ~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 295 (933)
..+..+..++ .+|..+. .++++|+|++|++++..+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|.+
T Consensus 11 ~~~c~~~~l~-~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCS-SCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCcc-ccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 3455555555 4565543 4799999999999988888999999999999999999988888999999999999999999
Q ss_pred CCCCCCccccCCcceEeeeccccccccCCccccccccccccccccccCCCC-CCCCcccCCCCCceeccCcccCCCCCcc
Q 002349 296 TGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGP-IPDNLSSCTNLNSLNVHGNKLNGTIPPA 374 (933)
Q Consensus 296 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~~~~~ 374 (933)
++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|++.+. +|..+..+++|++|++++|++++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 988889999999999999999999988777899999999999999999864 5888888999999999999888766666
Q ss_pred cccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccc
Q 002349 375 FQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVM 454 (933)
Q Consensus 375 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 454 (933)
|..+++|+.+.+ .|++++|.+++..+..+.. .+|+.|+|++|++++..+..|.++++|+
T Consensus 169 ~~~l~~L~~l~l--------------------~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 169 LRVLHQMPLLNL--------------------SLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp GHHHHTCTTCCE--------------------EEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred hhhhhhccccce--------------------eeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhccccccc
Confidence 666665552221 5666667666444444433 4688888888888877666778888888
Q ss_pred eEEccCCccccccc
Q 002349 455 EIDLSHNHLTGVIP 468 (933)
Q Consensus 455 ~L~Ls~N~l~~~~p 468 (933)
.|+|++|++++..|
T Consensus 228 ~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 228 KIWLHTNPWDCSCP 241 (276)
T ss_dssp EEECCSSCBCCCTT
T ss_pred EEEccCCcccccCC
Confidence 88888888886543
No 326
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.1e-24 Score=232.64 Aligned_cols=205 Identities=27% Similarity=0.338 Sum_probs=129.1
Q ss_pred cccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccccccccccccc
Q 002349 260 ALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVA 339 (933)
Q Consensus 260 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~ 339 (933)
+.+.++++++.++. +|..+. +++++|+|++|++++..+..|.++++|++|+|++|+++...+
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~--------------- 78 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA--------------- 78 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT---------------
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh---------------
Confidence 45667777777763 443332 455666666666655444455555555555555555553333
Q ss_pred cccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCCC
Q 002349 340 NNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSI 419 (933)
Q Consensus 340 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 419 (933)
..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|.|++..
T Consensus 79 ---------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 79 ---------GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp ---------TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ---------hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 33444555555555555555444445555556666666666666555555666667777777777776555
Q ss_pred CCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcc
Q 002349 420 PSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDV 491 (933)
Q Consensus 420 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 491 (933)
+..|..+++|+.|+|++|++++..+..|.++++|++|+|++|++++..+..+..+++|+.|+|++|+|.|..
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 556777777777777777777766667777888888888888887766666777788888777777665543
No 327
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=4e-25 Score=238.06 Aligned_cols=204 Identities=25% Similarity=0.285 Sum_probs=156.4
Q ss_pred CCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCC
Q 002349 279 LGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLN 358 (933)
Q Consensus 279 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 358 (933)
+.++++++++++++|.++ .+|..+. ++++.|+|++|++++..+..|..+++|+.|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 567788899999999888 4565554 6888999999999888788888888888888888888754332 6778888
Q ss_pred ceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcc
Q 002349 359 SLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQ 438 (933)
Q Consensus 359 ~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 438 (933)
.|++++|+++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 8888888887 566777778888888888888887766777777888888888888876666667777778888888888
Q ss_pred cccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcC
Q 002349 439 LTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSG 489 (933)
Q Consensus 439 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 489 (933)
|++..+..|.++++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|.|
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 77666666777777777888777777 566666666677766666655544
No 328
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=2.3e-28 Score=292.51 Aligned_cols=414 Identities=13% Similarity=0.078 Sum_probs=293.9
Q ss_pred cEEEEEcCCCCcCccc---CC------------CCCCCCCccEEEccCCcccccCCCCcc-CCCCCceeccccc-ccCCC
Q 002349 69 TVIALNLSGLNLDGEI---SP------------AVGDLKDLQSIDLRGNRLSGQIPDEIG-DCSSLKSLDLSFN-ELYGD 131 (933)
Q Consensus 69 ~v~~l~l~~~~l~~~~---~~------------~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n-~l~~~ 131 (933)
++..|+|+++.....+ |. ....+++|++|+|++|.+++..+..+. .+++|++|+|++| .++..
T Consensus 67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 146 (594)
T 2p1m_B 67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD 146 (594)
T ss_dssp TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH
T ss_pred CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH
Confidence 5678888886532211 11 124678999999999999887777776 7999999999999 55532
Q ss_pred -CCcccccccchhhhhhcccCccCCCCcccc----cCCCCceeeeecCC--CCCC-cccccccCCCCcEEeccCc-cccC
Q 002349 132 -IPFSISKLKQLEFLILKNNQLIGPIPSTLS----QLPNLKVFGLRGNN--LVGT-LSPDMCQLSGLWYFDVRNN-SLTG 202 (933)
Q Consensus 132 -~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~----~l~~L~~L~L~~N~--l~~~-~~~~~~~l~~L~~L~L~~n-~l~~ 202 (933)
++..+.++++|++|+|++|.+++..+..+. .+++|+.|+|++|. +... ++..+..+++|++|++++| .+.+
T Consensus 147 ~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~ 226 (594)
T 2p1m_B 147 GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK 226 (594)
T ss_dssp HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH
T ss_pred HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH
Confidence 444456899999999999998876555444 67799999999997 2211 1122345799999999999 4554
Q ss_pred ccCcCCcCCCCCcEEccccc-------cccCcCCCCccccccceE-eccccccccccCccccccccccEEeccCCcCcCC
Q 002349 203 SIPQNIGNCTSFQVLDLSYN-------QLSGEIPFNIGFLQIATL-SLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGP 274 (933)
Q Consensus 203 ~~p~~l~~l~~L~~L~L~~N-------~l~~~~p~~~~~~~L~~L-~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 274 (933)
+|..+.++++|++|+++.+ .+.+..+......+|+.| .+.+... +.++..+..+++|+.|+|++|.+++.
T Consensus 227 -l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~ 304 (594)
T 2p1m_B 227 -LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSY 304 (594)
T ss_dssp -HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHH
T ss_pred -HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHH
Confidence 7888889999999996554 333322212233467777 3443322 34566666889999999999997654
Q ss_pred CC-CCCCCCCCccEEEeeCCccCCC-CCCccccCCcceEeeec---------cccccccCCcccc-cccccccccccccc
Q 002349 275 IP-PILGNLSYTEKLYLHSNKLTGH-IPPELGNMTKLHYLELN---------DNQLTGHIPPALG-KLTDLFDLNVANNH 342 (933)
Q Consensus 275 ~~-~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~---------~N~l~~~~~~~l~-~l~~L~~L~L~~N~ 342 (933)
.. ..+..+++|++|++++| ++.. ++.....+++|+.|+++ .+.+++.....+. .+++|+.|.++.|.
T Consensus 305 ~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~ 383 (594)
T 2p1m_B 305 DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ 383 (594)
T ss_dssp HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC
T ss_pred HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC
Confidence 32 23568899999999988 4422 22223458999999994 3556543333333 47899999999999
Q ss_pred CCCCCCCCcc-cCCCCCceecc--C----cccCCCCC-----cccccccccceecCCcccccCCCcccccc-ccccceee
Q 002349 343 LEGPIPDNLS-SCTNLNSLNVH--G----NKLNGTIP-----PAFQRLESMTYLNLSLNNIRGPIPVELSR-IGNLDTLD 409 (933)
Q Consensus 343 l~~~~p~~l~-~l~~L~~L~l~--~----N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~ 409 (933)
+++..+..+. .+++|+.|+++ + |.+++... ..+..+++|+.|+|++ .+++..+..+.. +++|+.|+
T Consensus 384 l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~ 462 (594)
T 2p1m_B 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLS 462 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEE
T ss_pred cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEee
Confidence 8765544554 58999999999 4 56663222 2266789999999987 666555555655 88999999
Q ss_pred ccCCccCCCCCCCC-CCccccccccccCccccccccc-ccccccccceEEccCCccccccchhh-ccccccceeeecCCC
Q 002349 410 MSNNKISGSIPSPL-GDLEHLLKLNLSRNQLTGFIPG-EFGNLRSVMEIDLSHNHLTGVIPEEL-SQLQNMFSLRLDYNN 486 (933)
Q Consensus 410 Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~ 486 (933)
|++|.+++..+..+ ..+++|+.|+|++|.+++.... ....+++|+.|++++|+++......+ ..+++|+...+..+.
T Consensus 463 L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 463 VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp EESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred ccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 99999976555444 5689999999999999765544 44568999999999999965444444 456777665555543
No 329
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.91 E-value=1.5e-25 Score=261.57 Aligned_cols=185 Identities=17% Similarity=0.186 Sum_probs=146.0
Q ss_pred CcceeeecccceeEEEEEEcCCceEEEEEecccCc--------hhHHHHHHHHHHHhcCCCCceeeeeeEEecCCccEEE
Q 002349 601 SEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYP--------QCLKEFETELETVGSIKHRNLVSLQGYSLSSSGNLLF 672 (933)
Q Consensus 601 ~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 672 (933)
...++||+|+||.||+|.. .++.+|+|+...... ...+++.+|++++++++||||+++..++...+..++|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 4456899999999999954 457889988654321 1234589999999999999999777777778888999
Q ss_pred EEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeeccccccccc
Q 002349 673 YDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCV 752 (933)
Q Consensus 673 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~ 752 (933)
|||+++++|.++++. +..++.|+++||+|||++ +|+||||||+|||++. .+||+|||+|+....
T Consensus 418 mE~~~ggsL~~~l~~-----------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~ 481 (540)
T 3en9_A 418 MSYINGKLAKDVIED-----------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLGKISNL 481 (540)
T ss_dssp EECCCSEEHHHHSTT-----------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTCEECCC
T ss_pred EECCCCCCHHHHHHH-----------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccCEECCC
Confidence 999999999999952 568999999999999966 9999999999999999 999999999998744
Q ss_pred CCCce------eeeecccccccCcccccc--CCCCcchhhHHHHHHHHHHHhCCCCCC
Q 002349 753 SKSYT------STYIMGTIGYIDPEYART--SRLTEKSDVYSFGIVLLELLTGRKAVD 802 (933)
Q Consensus 753 ~~~~~------~~~~~gt~~y~aPE~~~~--~~~~~~~DvwSlGv~l~elltg~~p~~ 802 (933)
..... .....||+.|||||++.. ..|+..+|+|+..+-..+.+.++.+|.
T Consensus 482 ~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 482 DEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred ccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 32211 235679999999999987 568888999999999998888777653
No 330
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.9e-24 Score=232.69 Aligned_cols=204 Identities=25% Similarity=0.232 Sum_probs=139.5
Q ss_pred ccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCcccccccccc
Q 002349 255 IGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLF 334 (933)
Q Consensus 255 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~ 334 (933)
++.+++++.+++++|.++. +|..+. ++++.|+|++|++++..+..|..+++|++|+|++|.|++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 4556667777777777763 343332 5667777777777766666777777777777777777754332 5667777
Q ss_pred ccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCc
Q 002349 335 DLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNK 414 (933)
Q Consensus 335 ~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 414 (933)
.|++++|++. .+|..+..+++|++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777777776 556666777777777777777776666667777777777777777776666666677777777777777
Q ss_pred cCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCcccc
Q 002349 415 ISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTG 465 (933)
Q Consensus 415 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 465 (933)
|++..+..|..+++|+.|+|++|+|+ .+|..+..+.+|+.|+|++|++..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 77555555666777777777777777 556666666677777777777654
No 331
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=9.3e-25 Score=233.29 Aligned_cols=182 Identities=29% Similarity=0.337 Sum_probs=97.0
Q ss_pred cccCCcceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccc
Q 002349 303 LGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMT 382 (933)
Q Consensus 303 l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 382 (933)
+..+++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 33344444444444444421 2344444444444444444444444444555555555555555544444455555555
Q ss_pred eecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCc
Q 002349 383 YLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNH 462 (933)
Q Consensus 383 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 462 (933)
+|++++|++++..+..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|+
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 55555555554444445555556666666666655555555566666666666666665555556666666666666666
Q ss_pred cccccchhhccccccceeeecCCCCcCcccc
Q 002349 463 LTGVIPEELSQLQNMFSLRLDYNNLSGDVMS 493 (933)
Q Consensus 463 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~ 493 (933)
+.+. +++|+.|++.+|.++|.+|.
T Consensus 217 ~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 217 WDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp BCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred cccc-------CcHHHHHHHHHHhCCCcccC
Confidence 6543 23456666666666665553
No 332
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.2e-24 Score=232.38 Aligned_cols=166 Identities=24% Similarity=0.293 Sum_probs=79.8
Q ss_pred cccCCcceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccc
Q 002349 303 LGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMT 382 (933)
Q Consensus 303 l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 382 (933)
+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|+
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence 33344444444444444433333344444444444444444433333444444444444444444444444444444555
Q ss_pred eecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCc
Q 002349 383 YLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNH 462 (933)
Q Consensus 383 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 462 (933)
+|++++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+.+. +++|+.|+++.|+
T Consensus 161 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINK 233 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHH
T ss_pred EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHh
Confidence 555555555444444444555555555555555544444455555555555555555432 2345555555566
Q ss_pred cccccchhhcccc
Q 002349 463 LTGVIPEELSQLQ 475 (933)
Q Consensus 463 l~~~~p~~~~~l~ 475 (933)
++|.+|..++.++
T Consensus 234 ~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 234 HSGVVRNSAGSVA 246 (272)
T ss_dssp TGGGBBCTTSCBC
T ss_pred CCCcccCcccccC
Confidence 6666665555444
No 333
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=6e-24 Score=231.73 Aligned_cols=205 Identities=22% Similarity=0.217 Sum_probs=105.1
Q ss_pred CCCCceecccccccCCCCCccc--ccccchhhhhhcccCccCCCC----cccccCCCCceeeeecCCCCCCcccccccCC
Q 002349 115 CSSLKSLDLSFNELYGDIPFSI--SKLKQLEFLILKNNQLIGPIP----STLSQLPNLKVFGLRGNNLVGTLSPDMCQLS 188 (933)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 188 (933)
+++|++|+|++|.+++.+|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|+|++|++.+..+..|..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3446666666666655555555 555566666666666555433 2233455555555555555555445555555
Q ss_pred CCcEEeccCccccCc--c--CcCCcCCCCCcEEccccccccCcCCCCccccccceEeccccccccccCccccccccccEE
Q 002349 189 GLWYFDVRNNSLTGS--I--PQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVL 264 (933)
Q Consensus 189 ~L~~L~L~~n~l~~~--~--p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 264 (933)
+|++|+|++|++.+. + +..++.+++|++|+|++|+++. ++ +.....++.+++|++|
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~-------------------~~~~~l~~~l~~L~~L 229 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PT-------------------GVCAALAAAGVQPHSL 229 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HH-------------------HHHHHHHHHTCCCSSE
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hH-------------------HHHHHHHhcCCCCCEE
Confidence 555555555554421 1 1122444555555555554431 00 0001124556777777
Q ss_pred eccCCcCcCCCCCCCCCC---CCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccccccccccccccc
Q 002349 265 DLSCNMLSGPIPPILGNL---SYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANN 341 (933)
Q Consensus 265 ~Ls~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 341 (933)
+|++|++++..|..+..+ ++|++|+|++|+|+ .+|..+. ++|++|+|++|+|++. |. +..+++|+.|++++|
T Consensus 230 ~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 230 DLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp ECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSST
T ss_pred ECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCC
Confidence 777777776666655554 46666666666665 3444442 4555555555555532 21 334444444444444
Q ss_pred cCC
Q 002349 342 HLE 344 (933)
Q Consensus 342 ~l~ 344 (933)
+++
T Consensus 305 ~l~ 307 (310)
T 4glp_A 305 PFL 307 (310)
T ss_dssp TTS
T ss_pred CCC
Confidence 443
No 334
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=6e-26 Score=250.87 Aligned_cols=268 Identities=20% Similarity=0.222 Sum_probs=186.5
Q ss_pred CCCCccceEecCCCCcEEEEEcCCCCcCcccCCCCCCC--CCccEEEccCCcccccCCCCccCCCCCceecccccccCCC
Q 002349 54 DYCVWRGITCDNVTFTVIALNLSGLNLDGEISPAVGDL--KDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGD 131 (933)
Q Consensus 54 ~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 131 (933)
-|.+|+++.|+.. .+..++++++.+. +..+..+ +.++.|++++|.+.+..+. +.++++|++|+|++|.+++.
T Consensus 35 vc~~W~~~~~~~~--~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 35 VCKRWYRLASDES--LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp SCHHHHHHHTCST--TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHhcCch--hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 4558999988643 4567888888877 3345556 7889999999999876554 66789999999999988765
Q ss_pred -CCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecC-CCCCC-cccccccCCCCcEEeccCc-cccCc-cCc
Q 002349 132 -IPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGN-NLVGT-LSPDMCQLSGLWYFDVRNN-SLTGS-IPQ 206 (933)
Q Consensus 132 -~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~p~ 206 (933)
+|..+..+++|++|+|++|.+++..|..++.+++|++|+|++| .+++. ++..+..+++|++|++++| .+++. ++.
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 7777888888888888888888777888888888888888888 56642 5556777888888888888 77753 566
Q ss_pred CCcCCC-CCcEEccccccccCcCCCCccccccceEeccccccc-cccCccccccccccEEeccCCc-CcCCCCCCCCCCC
Q 002349 207 NIGNCT-SFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLT-GKIPSVIGLMQALAVLDLSCNM-LSGPIPPILGNLS 283 (933)
Q Consensus 207 ~l~~l~-~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 283 (933)
.+..++ +|++|++++|.+. ++ +.++..+..+++|+.|++++|. +++..+..+..++
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~---------------------~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKN---------------------LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGG---------------------SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred HHHhcccCCCEEEeCCCccc---------------------CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence 667777 7777777777421 11 2344555667777777777777 6656666777777
Q ss_pred CccEEEeeCCc-cCCCCCCccccCCcceEeeeccccccccCCccccccc-cccccccccccCCCCCCCCcc
Q 002349 284 YTEKLYLHSNK-LTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLT-DLFDLNVANNHLEGPIPDNLS 352 (933)
Q Consensus 284 ~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~p~~l~ 352 (933)
+|++|+|++|. +.......+.++++|+.|++++| ++ ...+..+. .+..|++++|++++..|..++
T Consensus 248 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCccc
Confidence 77777777774 22111124666777777777766 32 12333332 355666666666666555544
No 335
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=1.6e-23 Score=219.15 Aligned_cols=203 Identities=17% Similarity=0.187 Sum_probs=152.0
Q ss_pred ccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccc-cCCCCCcccccccchhhhhhcc-cCccCCCCccc
Q 002349 83 EISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNE-LYGDIPFSISKLKQLEFLILKN-NQLIGPIPSTL 160 (933)
Q Consensus 83 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l 160 (933)
.+|. +. ++|++|+|++|++++..+..|+++++|++|+|++|+ +++..+..|.++++|++|+|++ |++++..+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4555 43 389999999999997766789999999999999997 8766666899999999999998 99997777889
Q ss_pred ccCCCCceeeeecCCCCCCcccccccCCCCc---EEeccCc-cccCccCcCCcCCCCCc-EEccccccccCcCCCCcccc
Q 002349 161 SQLPNLKVFGLRGNNLVGTLSPDMCQLSGLW---YFDVRNN-SLTGSIPQNIGNCTSFQ-VLDLSYNQLSGEIPFNIGFL 235 (933)
Q Consensus 161 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~L~~N~l~~~~p~~~~~~ 235 (933)
.++++|++|+|++|++++ +|. +..+++|+ +|++++| .+++..+..|.++++|+ +|++++|+++ .+|..
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~---- 174 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY---- 174 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTT----
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHh----
Confidence 999999999999999986 555 88888888 9999999 89877777789999999 9999999887 33322
Q ss_pred ccceEeccccccccccCccccccccccEEeccCCc-CcCCCCCCCCCC-CCccEEEeeCCccCCCCCCccccCCcceEee
Q 002349 236 QIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNM-LSGPIPPILGNL-SYTEKLYLHSNKLTGHIPPELGNMTKLHYLE 313 (933)
Q Consensus 236 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 313 (933)
.+.. ++|+.|+|++|+ +++..+..|.++ ++|+.|+|++|++++. |.. .+++|+.|+
T Consensus 175 ------------------~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~ 232 (239)
T 2xwt_C 175 ------------------AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELI 232 (239)
T ss_dssp ------------------TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEE
T ss_pred ------------------hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceee
Confidence 1122 455555555553 554445555555 5666666666666532 222 345566666
Q ss_pred eccc
Q 002349 314 LNDN 317 (933)
Q Consensus 314 L~~N 317 (933)
++++
T Consensus 233 l~~~ 236 (239)
T 2xwt_C 233 ARNT 236 (239)
T ss_dssp CTTC
T ss_pred ccCc
Confidence 5544
No 336
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.4e-25 Score=247.16 Aligned_cols=255 Identities=19% Similarity=0.189 Sum_probs=196.5
Q ss_pred EEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCC----CCccCCC-CCceecccccccCCCCCcccccc-----cc
Q 002349 72 ALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIP----DEIGDCS-SLKSLDLSFNELYGDIPFSISKL-----KQ 141 (933)
Q Consensus 72 ~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l-----~~ 141 (933)
..+|+.++++|.+|..+...++|++|+|++|.+++..+ +.|.+++ +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35788899999988888888889999999999987655 6788888 89999999999998888888776 89
Q ss_pred hhhhhhcccCccCCCCccccc----C-CCCceeeeecCCCCCCccccccc-----CCCCcEEeccCccccCcc----CcC
Q 002349 142 LEFLILKNNQLIGPIPSTLSQ----L-PNLKVFGLRGNNLVGTLSPDMCQ-----LSGLWYFDVRNNSLTGSI----PQN 207 (933)
Q Consensus 142 L~~L~L~~n~l~~~~p~~l~~----l-~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~----p~~ 207 (933)
|++|+|++|.+++..+..++. + ++|++|+|++|++++..+..++. .++|++|+|++|.+++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999999877765544 4 89999999999998776665543 368999999999998533 344
Q ss_pred CcCCC-CCcEEccccccccCcCCCCcc-----c-cccceEeccccccccc----cCccccc-cccccEEeccCCcCcCCC
Q 002349 208 IGNCT-SFQVLDLSYNQLSGEIPFNIG-----F-LQIATLSLQGNQLTGK----IPSVIGL-MQALAVLDLSCNMLSGPI 275 (933)
Q Consensus 208 l~~l~-~L~~L~L~~N~l~~~~p~~~~-----~-~~L~~L~L~~n~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~ 275 (933)
+..++ +|++|+|++|++++..+..+. . .+|++|+|++|++++. ++..+.. .++|++|+|++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 899999999999866654332 1 3788899999988863 4445554 358888999988888654
Q ss_pred C----CCCCCCCCccEEEeeCCccCCCC-------CCccccCCcceEeeeccccccccCCcc
Q 002349 276 P----PILGNLSYTEKLYLHSNKLTGHI-------PPELGNMTKLHYLELNDNQLTGHIPPA 326 (933)
Q Consensus 276 ~----~~~~~l~~L~~L~L~~N~l~~~~-------p~~l~~l~~L~~L~L~~N~l~~~~~~~ 326 (933)
+ ..+..+++|+.|+|++|.+.+.. +..+..+++|+.||+++|++.+..+..
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 4 34567788888888888855332 345677788888888888887654433
No 337
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.3e-25 Score=247.32 Aligned_cols=251 Identities=20% Similarity=0.214 Sum_probs=194.3
Q ss_pred EEEccCCcccccCCCCccCCCCCceecccccccCCCCC----ccccccc-chhhhhhcccCccCCCCcccccC-----CC
Q 002349 96 SIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIP----FSISKLK-QLEFLILKNNQLIGPIPSTLSQL-----PN 165 (933)
Q Consensus 96 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~~ 165 (933)
+++|++|+++|.+|..+...++|++|||++|.+++..+ ..|.+++ +|++|+|++|.+++..+..++.+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 47899999999999888888889999999999997766 6778888 89999999999998888888775 99
Q ss_pred CceeeeecCCCCCCcccccccC-----CCCcEEeccCccccCccCcCCc----C-CCCCcEEccccccccCcCCCCc---
Q 002349 166 LKVFGLRGNNLVGTLSPDMCQL-----SGLWYFDVRNNSLTGSIPQNIG----N-CTSFQVLDLSYNQLSGEIPFNI--- 232 (933)
Q Consensus 166 L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~----~-l~~L~~L~L~~N~l~~~~p~~~--- 232 (933)
|++|+|++|++++..+..++.. ++|++|+|++|.+++..+..+. . .++|++|+|++|++++..+..+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999998777755544 8999999999999876665443 3 3699999999999985433322
Q ss_pred -c-c-cccceEeccccccccccCcccccc-----ccccEEeccCCcCcCC----CCCCCCC-CCCccEEEeeCCccCCCC
Q 002349 233 -G-F-LQIATLSLQGNQLTGKIPSVIGLM-----QALAVLDLSCNMLSGP----IPPILGN-LSYTEKLYLHSNKLTGHI 299 (933)
Q Consensus 233 -~-~-~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~----~~~~~~~-l~~L~~L~L~~N~l~~~~ 299 (933)
. . .+|++|+|++|++++..+..+... ++|++|+|++|.+++. ++..+.. .++|++|+|++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 1 2 278899999999887776555443 5889999999988863 3334444 358888888888888654
Q ss_pred C----CccccCCcceEeeecccccccc-------CCccccccccccccccccccCCCC
Q 002349 300 P----PELGNMTKLHYLELNDNQLTGH-------IPPALGKLTDLFDLNVANNHLEGP 346 (933)
Q Consensus 300 p----~~l~~l~~L~~L~L~~N~l~~~-------~~~~l~~l~~L~~L~L~~N~l~~~ 346 (933)
+ ..+..+++|+.|+|++|.+.+. ++..+..+++|+.|++++|++...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4 3346678888888888885433 233566777788888888877644
No 338
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2e-23 Score=227.54 Aligned_cols=203 Identities=19% Similarity=0.184 Sum_probs=113.3
Q ss_pred cccccEEeccCCcCcCCCCCCC--CCCCCccEEEeeCCccCCCCC----CccccCCcceEeeeccccccccCCccccccc
Q 002349 258 MQALAVLDLSCNMLSGPIPPIL--GNLSYTEKLYLHSNKLTGHIP----PELGNMTKLHYLELNDNQLTGHIPPALGKLT 331 (933)
Q Consensus 258 l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~ 331 (933)
+++|++|++++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|+|++|++++..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3457777777777766666666 666666666666666665433 2233455555555555555555555555555
Q ss_pred cccccccccccCCCC--CCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCcc----cccccccc
Q 002349 332 DLFDLNVANNHLEGP--IPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPV----ELSRIGNL 405 (933)
Q Consensus 332 ~L~~L~L~~N~l~~~--~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L 405 (933)
+|++|++++|++.+. ++ .+..+..+++|++|+|++|+++. ++. .+..+++|
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~----------------------~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L 226 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLM----------------------AALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQP 226 (310)
T ss_dssp TCCEEECCSCTTCHHHHHH----------------------TTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCC
T ss_pred CCCEEECCCCCCccchhhh----------------------HHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCC
Confidence 555555555554321 10 01112344444555555554431 111 13455566
Q ss_pred ceeeccCCccCCCCCCCCCCc---cccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeee
Q 002349 406 DTLDMSNNKISGSIPSPLGDL---EHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRL 482 (933)
Q Consensus 406 ~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 482 (933)
++|||++|+|++..|..+..+ ++|++|+|++|+|+ .+|..+. ++|++|||++|+|++. |. +..+++|+.|+|
T Consensus 227 ~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L 301 (310)
T 4glp_A 227 HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTL 301 (310)
T ss_dssp SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEEC
T ss_pred CEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEEC
Confidence 666666666665555555554 46666666666666 4455543 5677777777777653 22 456677777777
Q ss_pred cCCCCc
Q 002349 483 DYNNLS 488 (933)
Q Consensus 483 ~~N~l~ 488 (933)
++|+|+
T Consensus 302 ~~N~l~ 307 (310)
T 4glp_A 302 DGNPFL 307 (310)
T ss_dssp SSTTTS
T ss_pred cCCCCC
Confidence 777665
No 339
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=9.2e-23 Score=215.04 Aligned_cols=182 Identities=21% Similarity=0.274 Sum_probs=122.6
Q ss_pred cceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCC
Q 002349 308 KLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLS 387 (933)
Q Consensus 308 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~ 387 (933)
..+.++++++.++ .+|..+. ++++.|++++|++.+..+..|.++++|++|++++|++++..+..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3445555555555 3444333 355666666666665555556666666666666666666666666666666666666
Q ss_pred cccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCcccccc
Q 002349 388 LNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVI 467 (933)
Q Consensus 388 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 467 (933)
+|++++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|.++++|++|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 66666666666667777777777777777666666677777777777777777666667777777777777777777777
Q ss_pred chhhccccccceeeecCCCCcCccc
Q 002349 468 PEELSQLQNMFSLRLDYNNLSGDVM 492 (933)
Q Consensus 468 p~~~~~l~~L~~L~l~~N~l~~~~~ 492 (933)
+..+..+++|+.|+|++|+|+|...
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTTST
T ss_pred HHHHhCCCCCCEEEeeCCceeCCcc
Confidence 7777777778888888888777643
No 340
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=2.6e-23 Score=217.64 Aligned_cols=196 Identities=18% Similarity=0.211 Sum_probs=112.8
Q ss_pred CccEEEeeCCccCCCCCCccccCCcceEeeecccc-ccccCCcccccccccccccccc-ccCCCCCCCCcccCCCCCcee
Q 002349 284 YTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQ-LTGHIPPALGKLTDLFDLNVAN-NHLEGPIPDNLSSCTNLNSLN 361 (933)
Q Consensus 284 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~ 361 (933)
+|++|+|++|++++..+..|.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444445555555555555554 4444444455555555555555 555544444555555555555
Q ss_pred ccCcccCCCCCcccccccccc---eecCCcc-cccCCCccccccccccc-eeeccCCccCCCCCCCCCCccccccccccC
Q 002349 362 VHGNKLNGTIPPAFQRLESMT---YLNLSLN-NIRGPIPVELSRIGNLD-TLDMSNNKISGSIPSPLGDLEHLLKLNLSR 436 (933)
Q Consensus 362 l~~N~l~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 436 (933)
+++|++++ +|. |..+++|+ +|++++| .+++..+..|..+++|+ .|++++|+++...+..|.. ++|+.|+|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 55555554 333 55555555 6666666 66655555566666666 6667666666332333333 6777777777
Q ss_pred cc-cccccccccccc-cccceEEccCCccccccchhhccccccceeeecCC
Q 002349 437 NQ-LTGFIPGEFGNL-RSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYN 485 (933)
Q Consensus 437 N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 485 (933)
|+ +++..+..|.++ ++|+.|+|++|++++..+. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 74 776666677777 7777777777777744333 4566666666654
No 341
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=5.5e-23 Score=228.04 Aligned_cols=245 Identities=18% Similarity=0.149 Sum_probs=166.5
Q ss_pred CCCCccceEecCCCCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCC
Q 002349 54 DYCVWRGITCDNVTFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIP 133 (933)
Q Consensus 54 ~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 133 (933)
+.|.|+.|.|++ ++|+ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+|
T Consensus 7 C~C~~~~v~C~~------------~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~ 71 (350)
T 4ay9_X 7 CHCSNRVFLCQE------------SKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71 (350)
T ss_dssp SEEETTEEEEES------------TTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC
T ss_pred cEeeCCEEEecC------------CCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC
Confidence 446777777753 4555 567665 3689999999999995444579999999999999999977776
Q ss_pred c-ccccccchhh-hhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccC-ccccCccCcCCcC
Q 002349 134 F-SISKLKQLEF-LILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRN-NSLTGSIPQNIGN 210 (933)
Q Consensus 134 ~-~~~~l~~L~~-L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~ 210 (933)
. .|.++++|++ +.++.|+++...|..|..+++|++|++++|++.+..+..+....++..|++.+ |++....+..|..
T Consensus 72 ~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~ 151 (350)
T 4ay9_X 72 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151 (350)
T ss_dssp TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT
T ss_pred hhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhh
Confidence 5 5788988775 66778999988888899999999999999999877777777888888898865 5666555556666
Q ss_pred CC-CCcEEccccccccCcCCCCccccccceEeccc-cccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEE
Q 002349 211 CT-SFQVLDLSYNQLSGEIPFNIGFLQIATLSLQG-NQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKL 288 (933)
Q Consensus 211 l~-~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 288 (933)
+. .++.|+|++|+|+...+..+...++++|++.+ |.++...+..|..+++|++|||++|+|+...+..|. +|+.|
T Consensus 152 ~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L 228 (350)
T 4ay9_X 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKL 228 (350)
T ss_dssp SBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEE
T ss_pred cchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHh
Confidence 54 57888888888874444444445566666653 444433334556666666666666666644333333 33333
Q ss_pred EeeCCccCCCCCCccccCCcceEeeeccc
Q 002349 289 YLHSNKLTGHIPPELGNMTKLHYLELNDN 317 (933)
Q Consensus 289 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 317 (933)
.+.++.--..+| .+.++++|+.+++.++
T Consensus 229 ~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 229 RARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp ECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 332222111333 2455555555555543
No 342
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=2e-22 Score=212.43 Aligned_cols=181 Identities=25% Similarity=0.322 Sum_probs=114.1
Q ss_pred ccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCcccccccccccccc
Q 002349 259 QALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNV 338 (933)
Q Consensus 259 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 338 (933)
.+.+.++++++.++ .+|..+. ++++.|+|++|.+++..+..|.++++|++|+|++|++++.
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------- 74 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL---------------- 74 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC----------------
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc----------------
Confidence 34566777777666 3333332 3555555555555555555555555555555555555544
Q ss_pred ccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCC
Q 002349 339 ANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGS 418 (933)
Q Consensus 339 ~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 418 (933)
.+..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+|++.
T Consensus 75 --------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 75 --------SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp --------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred --------CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence 444445555555555555555555555555666666666666666655555566667777777777777766
Q ss_pred CCCCCCCccccccccccCcccccccccccccccccceEEccCCccccc
Q 002349 419 IPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGV 466 (933)
Q Consensus 419 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 466 (933)
.+..|..+++|+.|+|++|+|++..+..|.++++|+.|+|++|++++.
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 666777777788888888888777777788888888888888888765
No 343
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.2e-22 Score=207.55 Aligned_cols=187 Identities=23% Similarity=0.201 Sum_probs=149.6
Q ss_pred CCCCCCccceEecCCCCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCC
Q 002349 52 SSDYCVWRGITCDNVTFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGD 131 (933)
Q Consensus 52 ~~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 131 (933)
..+.|.|.+|.|+.. +++ .+|..+ .++|++|+|++|++++..+..|+++++|++|+|++|++++.
T Consensus 3 ~~C~C~~~~v~c~~~------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 67 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQ------------GRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67 (208)
T ss_dssp TTCEEETTEEECCSS------------CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CCCEECCCEEEecCC------------Ccc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc
Confidence 456789999999653 233 344433 35899999999999976667789999999999999999976
Q ss_pred CCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCC
Q 002349 132 IPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNC 211 (933)
Q Consensus 132 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 211 (933)
.+..|..+++|++|+|++|++++..+..++.+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+..+
T Consensus 68 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 147 (208)
T 2o6s_A 68 PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC
Confidence 66678999999999999999997777778999999999999999997777778899999999999999997777778999
Q ss_pred CCCcEEccccccccCcCCCCccccccceEeccccccccccCccccccc
Q 002349 212 TSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQ 259 (933)
Q Consensus 212 ~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 259 (933)
++|++|++++|.+.+..| .++.|+++.|+++|.+|..++.++
T Consensus 148 ~~L~~L~l~~N~~~~~~~------~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 148 TSLQYIWLHDNPWDCTCP------GIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTCCEEECCSCCBCCCTT------TTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CCccEEEecCCCeecCCC------CHHHHHHHHHhCCceeeccCcccc
Confidence 999999999998775433 455556666666666665555443
No 344
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=3.1e-25 Score=249.98 Aligned_cols=242 Identities=21% Similarity=0.235 Sum_probs=168.8
Q ss_pred cCccccccccccEEeccCCcCcCC----CCCCCCCCCCccEEEeeCCc---cCCCCCCcc-------ccCCcceEeeecc
Q 002349 251 IPSVIGLMQALAVLDLSCNMLSGP----IPPILGNLSYTEKLYLHSNK---LTGHIPPEL-------GNMTKLHYLELND 316 (933)
Q Consensus 251 ~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~---l~~~~p~~l-------~~l~~L~~L~L~~ 316 (933)
++..+..+++|+.|+|++|.+++. ++..|..+++|++|+|++|. +++.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 344455556666666666666543 22335556666666666643 333334333 4566677777777
Q ss_pred ccccc----cCCccccccccccccccccccCCCCCCCC----cccC---------CCCCceeccCcccC-CCCC---ccc
Q 002349 317 NQLTG----HIPPALGKLTDLFDLNVANNHLEGPIPDN----LSSC---------TNLNSLNVHGNKLN-GTIP---PAF 375 (933)
Q Consensus 317 N~l~~----~~~~~l~~l~~L~~L~L~~N~l~~~~p~~----l~~l---------~~L~~L~l~~N~l~-~~~~---~~~ 375 (933)
|.+++ .+|..+..+++|+.|+|++|.++...+.. +..+ ++|++|++++|+++ +.++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 77665 35556666667777777777664322222 2223 78888888888886 3344 456
Q ss_pred ccccccceecCCcccccC-----CCccccccccccceeeccCCccC----CCCCCCCCCccccccccccCcccccc----
Q 002349 376 QRLESMTYLNLSLNNIRG-----PIPVELSRIGNLDTLDMSNNKIS----GSIPSPLGDLEHLLKLNLSRNQLTGF---- 442 (933)
Q Consensus 376 ~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~---- 442 (933)
..+++|++|+|++|+++. ..+..+..+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|++++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 678888899999988872 34447788889999999999985 56777888889999999999999866
Q ss_pred ccccc--ccccccceEEccCCcccc----ccchhh-ccccccceeeecCCCCcCccc
Q 002349 443 IPGEF--GNLRSVMEIDLSHNHLTG----VIPEEL-SQLQNMFSLRLDYNNLSGDVM 492 (933)
Q Consensus 443 ~p~~~--~~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~l~~N~l~~~~~ 492 (933)
+|..+ +++++|+.|+|++|++++ .+|..+ .++++|+.|+|++|++++..+
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 56666 348999999999999998 488777 668999999999999987654
No 345
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.4e-25 Score=250.90 Aligned_cols=264 Identities=17% Similarity=0.185 Sum_probs=129.5
Q ss_pred cCCCCccCCCCCceecccccccCCCCCc----ccccccchhhhhhccc---CccCCCCccc-------ccCCCCceeeee
Q 002349 107 QIPDEIGDCSSLKSLDLSFNELYGDIPF----SISKLKQLEFLILKNN---QLIGPIPSTL-------SQLPNLKVFGLR 172 (933)
Q Consensus 107 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~L~~n---~l~~~~p~~l-------~~l~~L~~L~L~ 172 (933)
.++..+..+++|++|+|++|.+++..+. .+..+++|++|+|++| ++++.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4566677777777777777777654333 3456666777777664 3344444444 455666666666
Q ss_pred cCCCCC----CcccccccCCCCcEEeccCccccCccCcCCcC----C---------CCCcEEccccccccCcCCCCcccc
Q 002349 173 GNNLVG----TLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGN----C---------TSFQVLDLSYNQLSGEIPFNIGFL 235 (933)
Q Consensus 173 ~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~----l---------~~L~~L~L~~N~l~~~~p~~~~~~ 235 (933)
+|.+++ .++..+..+++|++|+|++|.+++..+..+.. + ++|++|+|++|+++.
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~--------- 173 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN--------- 173 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG---------
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc---------
Confidence 666654 24445555555555555555554322222211 1 333333333333320
Q ss_pred ccceEeccccccccccC---ccccccccccEEeccCCcCcC-----CCCCCCCCCCCccEEEeeCCccCCCCCCccccCC
Q 002349 236 QIATLSLQGNQLTGKIP---SVIGLMQALAVLDLSCNMLSG-----PIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMT 307 (933)
Q Consensus 236 ~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 307 (933)
+.++ ..+..+++|+.|+|++|.++. ..+..+..+++|+.|+|++|.++...
T Consensus 174 -------------~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------- 232 (386)
T 2ca6_A 174 -------------GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------- 232 (386)
T ss_dssp -------------GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH--------
T ss_pred -------------HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH--------
Confidence 1112 233444455555555555541 12224444444444444444443000
Q ss_pred cceEeeeccccccccCCccccccccccccccccccCCCC----CCCCc--ccCCCCCceeccCcccCC----CCCccc-c
Q 002349 308 KLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGP----IPDNL--SSCTNLNSLNVHGNKLNG----TIPPAF-Q 376 (933)
Q Consensus 308 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~----~p~~l--~~l~~L~~L~l~~N~l~~----~~~~~~-~ 376 (933)
.+.+|..+..+++|+.|+|++|++++. ++..+ +.+++|+.|+|++|++++ .+|..+ .
T Consensus 233 ------------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~ 300 (386)
T 2ca6_A 233 ------------SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 300 (386)
T ss_dssp ------------HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh
Confidence 023334444444444444444444432 22333 225566666666666664 245444 4
Q ss_pred cccccceecCCcccccCCCc--ccc-ccccccceeeccC
Q 002349 377 RLESMTYLNLSLNNIRGPIP--VEL-SRIGNLDTLDMSN 412 (933)
Q Consensus 377 ~l~~L~~L~L~~N~l~~~~~--~~~-~~l~~L~~L~Ls~ 412 (933)
++++|++|++++|.+++..+ ..+ ..++.++.+++..
T Consensus 301 ~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 301 KMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred cCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 46667777777777665543 222 2244444455544
No 346
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=4.1e-23 Score=240.77 Aligned_cols=155 Identities=27% Similarity=0.329 Sum_probs=109.8
Q ss_pred cCCCCCCCCCCCC-----Cccce-EecCCCCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCC
Q 002349 44 LYDWTDSPSSDYC-----VWRGI-TCDNVTFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSS 117 (933)
Q Consensus 44 l~~w~~~~~~~~c-----~w~gv-~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 117 (933)
+.+|.. ..++| .|.|+ .|.. .+++.|+|++|++++ +|..+. ++|++|+|++|+|+ .+| +.+++
T Consensus 33 l~~W~~--~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~ 101 (571)
T 3cvr_A 33 WDKWEK--QALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPAS 101 (571)
T ss_dssp HHHHHT--TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTT
T ss_pred HHHHhc--cCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCC
Confidence 556754 34567 79999 7863 367788899988886 776663 78888888888888 677 45788
Q ss_pred CceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccC
Q 002349 118 LKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRN 197 (933)
Q Consensus 118 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 197 (933)
|++|+|++|.|++ +|. +.+ +|++|+|++|++++ +|. .+++|+.|+|++|+|++ +|. .+++|++|+|++
T Consensus 102 L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 102 LEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRN 169 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCC
Confidence 8888888888886 666 655 78888888888776 555 56777777777777765 443 456666666666
Q ss_pred ccccCccCcCCcCCCCCcEEcccccccc
Q 002349 198 NSLTGSIPQNIGNCTSFQVLDLSYNQLS 225 (933)
Q Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 225 (933)
|.|++ +|. +. ++|+.|+|++|+|+
T Consensus 170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 170 NQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp SCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 66664 554 44 56666666666655
No 347
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.9e-22 Score=219.34 Aligned_cols=197 Identities=25% Similarity=0.402 Sum_probs=109.7
Q ss_pred ccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCcccccccccc
Q 002349 255 IGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLF 334 (933)
Q Consensus 255 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~ 334 (933)
+..+++|+.|++++|.++. ++ .+..+++|++|+|++|.+++..+ +..+++|++|+|++|++++. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 3456677777777777764 23 46666777777777777764433 66666666666666666642 2455555555
Q ss_pred ccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCc
Q 002349 335 DLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNK 414 (933)
Q Consensus 335 ~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 414 (933)
.|++++|++++. + .+..+++|++|++++|+++ +..+ +..+++|+.|+|++|+
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~------------------------~~~~--l~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT------------------------NISP--LAGLTNLQYLSIGNAQ 162 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC------------------------CCGG--GGGCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC------------------------cCcc--ccCCCCccEEEccCCc
Confidence 555555555532 2 1444555555555555544 3322 4444555555555555
Q ss_pred cCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcc
Q 002349 415 ISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDV 491 (933)
Q Consensus 415 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 491 (933)
+++..+ +..+++|+.|+|++|++++..+ +..+++|+.|+|++|++++..| +..+++|+.|++++|++++.+
T Consensus 163 l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 163 VSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred CCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence 543222 5555555555555555554332 5555666666666666654432 555666666666666665533
No 348
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=4.5e-24 Score=235.74 Aligned_cols=199 Identities=21% Similarity=0.259 Sum_probs=105.5
Q ss_pred CCceeeeecCCCCCCcccccccC--CCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCCCCccccccceEec
Q 002349 165 NLKVFGLRGNNLVGTLSPDMCQL--SGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSL 242 (933)
Q Consensus 165 ~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L 242 (933)
.++.|++++|.+. +..+..+ ++++.|++++|.+.+..+. +.++++|++|+|++|++++.
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~--------------- 108 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS--------------- 108 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH---------------
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH---------------
Confidence 3667777777665 4445555 6667777777766655443 44566666666666555421
Q ss_pred cccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCC-ccCCC-CCCccccCCcceEeeeccc-cc
Q 002349 243 QGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSN-KLTGH-IPPELGNMTKLHYLELNDN-QL 319 (933)
Q Consensus 243 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~L~~L~L~~N-~l 319 (933)
.++..+..+++|++|+|++|.+++..+..++.+++|++|+|++| .+++. ++..+.++++|++|++++| .+
T Consensus 109 -------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 109 -------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp -------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred -------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 14444555666666666666666555555556666666666666 45431 3444555666666666666 55
Q ss_pred ccc-CCccccccc-ccccccccccc--CC-CCCCCCcccCCCCCceeccCcc-cCCCCCcccccccccceecCCcc
Q 002349 320 TGH-IPPALGKLT-DLFDLNVANNH--LE-GPIPDNLSSCTNLNSLNVHGNK-LNGTIPPAFQRLESMTYLNLSLN 389 (933)
Q Consensus 320 ~~~-~~~~l~~l~-~L~~L~L~~N~--l~-~~~p~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~L~~N 389 (933)
++. ++..+..++ +|++|++++|. ++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 532 334444455 55555555552 22 1222333344444444444444 33333334444444444444444
No 349
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=3.6e-22 Score=221.49 Aligned_cols=246 Identities=20% Similarity=0.158 Sum_probs=122.8
Q ss_pred ceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCC-CccccCCcceE-eeec
Q 002349 238 ATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIP-PELGNMTKLHY-LELN 315 (933)
Q Consensus 238 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~-L~L~ 315 (933)
++++.++++++ .+|..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| ..|.++++|.. +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 44566666666 344433 2456666666666665555566666666666666666654443 34556655443 4455
Q ss_pred cccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccC-cccCCCCCcccccccccceecCCcccccCC
Q 002349 316 DNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHG-NKLNGTIPPAFQRLESMTYLNLSLNNIRGP 394 (933)
Q Consensus 316 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 394 (933)
+|+++...|..|..+++|++|++++|++....+..+....++..|++.+ |++....+..|..+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~--------------- 153 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--------------- 153 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB---------------
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc---------------
Confidence 5666655555666666666666666666544444444445555555543 344433333444332
Q ss_pred CccccccccccceeeccCCccCCCCCCCCCCccccccccccC-cccccccccccccccccceEEccCCccccccchhhcc
Q 002349 395 IPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSR-NQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQ 473 (933)
Q Consensus 395 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 473 (933)
..++.|+|++|+|+ .+|.......+|+.|++++ |.++.+.+..|.++++|++|||++|+|+...+..+.+
T Consensus 154 --------~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~ 224 (350)
T 4ay9_X 154 --------FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224 (350)
T ss_dssp --------SSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT
T ss_pred --------hhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc
Confidence 13444555555554 2333333334455555542 3444333344555555555555555555443334444
Q ss_pred ccccceeeecCCCCcCcccchhhccccceeecCCCCCCCc
Q 002349 474 LQNMFSLRLDYNNLSGDVMSLINCLSLSVLFIGNPGLCGY 513 (933)
Q Consensus 474 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~N~~~C~~ 513 (933)
+++|+.+++ ++++.. |.+..+..+......|+|.|.|
T Consensus 225 L~~L~~l~~--~~l~~l-P~l~~l~~L~~l~l~~~~~c~~ 261 (350)
T 4ay9_X 225 LKKLRARST--YNLKKL-PTLEKLVALMEASLTYPSHCCA 261 (350)
T ss_dssp CCEEECTTC--TTCCCC-CCTTTCCSCCEEECSCHHHHHH
T ss_pred chHhhhccC--CCcCcC-CCchhCcChhhCcCCCCccccc
Confidence 444333332 222222 2333444444334456666644
No 350
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.86 E-value=1.7e-22 Score=215.96 Aligned_cols=150 Identities=14% Similarity=0.194 Sum_probs=120.6
Q ss_pred HHHHhhccCcceeeecccceeEEEEEEcCCceEEEEEecccCc------------------hhHHHHHHHHHHHhcCCCC
Q 002349 593 IMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYP------------------QCLKEFETELETVGSIKHR 654 (933)
Q Consensus 593 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~E~~~l~~l~h~ 654 (933)
+......|+..+.||+|+||.||+|.+.+++.||+|+++.... .....+.+|++++++++
T Consensus 85 ~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~-- 162 (282)
T 1zar_A 85 LVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ-- 162 (282)
T ss_dssp HHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--
Confidence 3334456667799999999999999997789999999964321 13456899999999999
Q ss_pred ceeeeeeEEecCCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeC
Q 002349 655 NLVSLQGYSLSSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLD 734 (933)
Q Consensus 655 niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~ 734 (933)
| +++.+++.. +..++||||+++++|.+ +.. .....++.|++.||+|||++ +|+||||||+|||++
T Consensus 163 ~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~---------~~~~~i~~qi~~~l~~lH~~---giiHrDlkp~NILl~ 227 (282)
T 1zar_A 163 G-LAVPKVYAW-EGNAVLMELIDAKELYR-VRV---------ENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVS 227 (282)
T ss_dssp T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC---------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEE
T ss_pred C-CCcCeEEec-cceEEEEEecCCCcHHH-cch---------hhHHHHHHHHHHHHHHHHHC---CCEeCCCCHHHEEEE
Confidence 5 666665543 56799999999999988 521 23457999999999999966 999999999999999
Q ss_pred CCCCeEEeecccccccccCCCceeeeecccccccCccccc
Q 002349 735 KDFEAHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYAR 774 (933)
Q Consensus 735 ~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~ 774 (933)
++.+||+|||+|+. +..|+|||++.
T Consensus 228 -~~~vkl~DFG~a~~--------------~~~~~a~e~l~ 252 (282)
T 1zar_A 228 -EEGIWIIDFPQSVE--------------VGEEGWREILE 252 (282)
T ss_dssp -TTEEEECCCTTCEE--------------TTSTTHHHHHH
T ss_pred -CCcEEEEECCCCeE--------------CCCCCHHHHHH
Confidence 99999999999963 34578899774
No 351
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=5.2e-22 Score=215.86 Aligned_cols=211 Identities=25% Similarity=0.358 Sum_probs=156.9
Q ss_pred CCcEEccccccccCcCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeC
Q 002349 213 SFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHS 292 (933)
Q Consensus 213 ~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 292 (933)
.+..+.+..+.++..++ .....+|++|++++|+++. ++ .+..+++|++|+|++|.+++..+ +..+++|++|+|++
T Consensus 20 ~~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 20 NAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG 94 (308)
T ss_dssp HHHHHHTTCSSTTSEEC-HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred HHHHHHhCCCCcCceec-HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccC
Confidence 34445566666654322 2234589999999999985 44 58899999999999999997655 99999999999999
Q ss_pred CccCCCCCCccccCCcceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCC
Q 002349 293 NKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIP 372 (933)
Q Consensus 293 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 372 (933)
|++++. ..+..+++|++|++++|++++. + .+..+++|+.|++++|++++..+ +..+++|+.|++++|++++..+
T Consensus 95 n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~ 168 (308)
T 1h6u_A 95 NPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP 168 (308)
T ss_dssp CCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred CcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh
Confidence 999964 3799999999999999999964 3 38999999999999999986544 7788888888888888875333
Q ss_pred cccccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccc
Q 002349 373 PAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLT 440 (933)
Q Consensus 373 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 440 (933)
+..+++|+.|++++|++++..+ +..+++|+.|+|++|++++.. .+..+++|+.|+|++|+++
T Consensus 169 --l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 169 --LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred --hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 6777777777777777764433 555666666666666665332 2455555555555555554
No 352
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=8.9e-22 Score=229.52 Aligned_cols=189 Identities=30% Similarity=0.399 Sum_probs=152.0
Q ss_pred cccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccccccccccccc
Q 002349 260 ALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVA 339 (933)
Q Consensus 260 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~ 339 (933)
+|+.|+|++|.|++ +|..+. ++|++|+|++|+|+ .+| ..+++|++|+|++|+|++ +|. +.+ +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888886 555443 67888888888888 566 456888899999998886 666 655 88889999
Q ss_pred cccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCCC
Q 002349 340 NNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSI 419 (933)
Q Consensus 340 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 419 (933)
+|++++ +|. .+++|+.|++++|+|++ +|. .+++|++|+|++|+|++ +|. |. ++|+.|+|++|+|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 998886 555 67889999999999986 554 56889999999999986 555 65 88999999999998 66
Q ss_pred CCCCCCcccc-------ccccccCcccccccccccccccccceEEccCCccccccchhhccccc
Q 002349 420 PSPLGDLEHL-------LKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQN 476 (933)
Q Consensus 420 p~~~~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 476 (933)
|. |.. +| +.|+|++|+|+ .+|..+.++++|+.|+|++|+|++.+|..+..+..
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 66 655 77 99999999999 57888888999999999999999999998888765
No 353
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.8e-20 Score=191.46 Aligned_cols=161 Identities=22% Similarity=0.243 Sum_probs=80.8
Q ss_pred CccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceecc
Q 002349 284 YTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVH 363 (933)
Q Consensus 284 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~ 363 (933)
+|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44555555555544444444445555555555555554433344445555555555555544444444555555555555
Q ss_pred CcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCccccccc
Q 002349 364 GNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFI 443 (933)
Q Consensus 364 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 443 (933)
+|++++..+..|..+++|++|++++|++++..+..+..+++|+.|+|++|.+.+ .+++|++|+++.|+++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 555554444445555555555555555554444445555555555555554442 2334555555555555555
Q ss_pred cccccccc
Q 002349 444 PGEFGNLR 451 (933)
Q Consensus 444 p~~~~~l~ 451 (933)
|..+++++
T Consensus 182 p~~~~~l~ 189 (208)
T 2o6s_A 182 RNSAGSVA 189 (208)
T ss_dssp BCTTSSBC
T ss_pred eccCcccc
Confidence 55554443
No 354
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=3.9e-20 Score=191.78 Aligned_cols=162 Identities=22% Similarity=0.178 Sum_probs=142.1
Q ss_pred CCCCCCccceEecCCCCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCC
Q 002349 52 SSDYCVWRGITCDNVTFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGD 131 (933)
Q Consensus 52 ~~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 131 (933)
+.+.|+|.+|.|++. +++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|.|++.
T Consensus 15 ~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i 79 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL 79 (229)
T ss_dssp TTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc
Confidence 468899999999643 233 5555444 8899999999999998899999999999999999999866
Q ss_pred CCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCC
Q 002349 132 IPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNC 211 (933)
Q Consensus 132 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 211 (933)
.+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 158 (229)
T 3e6j_A 80 PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred ChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCC
Confidence 6667899999999999999999877778899999999999999998 778899999999999999999997777789999
Q ss_pred CCCcEEccccccccCcCC
Q 002349 212 TSFQVLDLSYNQLSGEIP 229 (933)
Q Consensus 212 ~~L~~L~L~~N~l~~~~p 229 (933)
++|+.|+|++|.+.+..+
T Consensus 159 ~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 159 SSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTCCEEECTTSCBCTTBG
T ss_pred CCCCEEEeeCCCccCCcc
Confidence 999999999999886543
No 355
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.82 E-value=2.1e-22 Score=236.18 Aligned_cols=267 Identities=21% Similarity=0.155 Sum_probs=158.9
Q ss_pred CccceEecCCCCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCc-------ccccCCCC---ccCCCCCceeccccc
Q 002349 57 VWRGITCDNVTFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNR-------LSGQIPDE---IGDCSSLKSLDLSFN 126 (933)
Q Consensus 57 ~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~-------l~~~~p~~---l~~l~~L~~L~Ls~n 126 (933)
.|+++.|+....+|..+++..-.+.- ..+.. =-.+.+.+.. ..+..+.. +..+++|+.|+|++|
T Consensus 286 ~W~~~~~~~~~~~vw~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~L~~L~Ls~n 359 (567)
T 1dce_A 286 EWRTPDGRNRPSHVWLCDLPAASLND----QLPQH--TFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVE 359 (567)
T ss_dssp CCBCTTSSCCSEEEEEEECCGGGTST----TSSEE--EEEEEETTTTEEEEEEEETTCSEEEEECCSTTTTSSSCCCCHH
T ss_pred eeccCCcccccceeEEeecCcccccc----ccccc--eEEEeeccCCCCccccccCCCchhhhcccccCccceeccCChh
Confidence 58888887777788888876543321 00000 0011111100 11111112 256888888999999
Q ss_pred ccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEe-ccCccccCccC
Q 002349 127 ELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFD-VRNNSLTGSIP 205 (933)
Q Consensus 127 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~p 205 (933)
+++ .+|.+++++++|++|++++|.....+|.. +..+.+.+.+|..++.+++|+.|+ ++.|.+.
T Consensus 360 ~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~---- 423 (567)
T 1dce_A 360 KST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKAVDPMRAAYLD---- 423 (567)
T ss_dssp HHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH----
T ss_pred hHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcccCcchhhcccc----
Confidence 887 78888889999999988776521111100 111122334444555555555555 4444332
Q ss_pred cCCcCCCCCcEEccccccccCcCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCc
Q 002349 206 QNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYT 285 (933)
Q Consensus 206 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 285 (933)
+|+.+.+++|.++...+ ..|+.|+|++|++++ +|. ++.+++|+.|+|++|.|+ .+|..|+++++|
T Consensus 424 -------~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 488 (567)
T 1dce_A 424 -------DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL 488 (567)
T ss_dssp -------HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred -------hhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCC
Confidence 34445555555553211 135556666666664 444 677777777777777777 566677777777
Q ss_pred cEEEeeCCccCCCCCCccccCCcceEeeeccccccccC-CccccccccccccccccccCCCCCCCC---cccCCCCCcee
Q 002349 286 EKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHI-PPALGKLTDLFDLNVANNHLEGPIPDN---LSSCTNLNSLN 361 (933)
Q Consensus 286 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~p~~---l~~l~~L~~L~ 361 (933)
+.|+|++|+|++ +| .+.++++|+.|+|++|+|++.. |..++.+++|+.|+|++|++++..|.. +..+++|+.|+
T Consensus 489 ~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 489 EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 777777777775 45 6777777777777777777665 777777777777777777777554432 22367777775
Q ss_pred c
Q 002349 362 V 362 (933)
Q Consensus 362 l 362 (933)
+
T Consensus 567 l 567 (567)
T 1dce_A 567 T 567 (567)
T ss_dssp C
T ss_pred C
Confidence 3
No 356
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=1.9e-21 Score=235.32 Aligned_cols=269 Identities=20% Similarity=0.199 Sum_probs=134.3
Q ss_pred CChHHHHHHHHHHHhCCCC-CCCcCCCCCCCCCCCCCccceEecCCCCcEEEEEcCCCCcCcccCCCCCCCCCccE----
Q 002349 22 VDSEDGATLLKIKKSFRDV-DNVLYDWTDSPSSDYCVWRGITCDNVTFTVIALNLSGLNLDGEISPAVGDLKDLQS---- 96 (933)
Q Consensus 22 ~~~~d~~all~~k~~~~~~-~~~l~~w~~~~~~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~---- 96 (933)
....++++|+++......+ ...-.+|... .+..+.|.+++++. .+++.|+|.++++... +..+.....|..
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~ 204 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGD-STPSGTATNSAVST--PLTPKIELFANGKDEA-NQALLQHKKLSQYSID 204 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCC-CCccccCCCceecC--CccceEEeeCCCCCcc-hhhHhhcCccCccccc
Confidence 3455778999998776322 2233456433 45677899998864 5799999999998863 433332222222
Q ss_pred -EEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCC
Q 002349 97 -IDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNN 175 (933)
Q Consensus 97 -L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~ 175 (933)
++++.|.+. ..|..+..+++|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|++|++|++|+|++|+
T Consensus 205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 233334444 45778999999999999999998 88888889999999999999999 889999999999999999999
Q ss_pred CCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCCCCccccc--cceEeccccccccccCc
Q 002349 176 LVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQ--IATLSLQGNQLTGKIPS 253 (933)
Q Consensus 176 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~--L~~L~L~~n~l~~~~p~ 253 (933)
|+ .+|..|+++++|++|+|++|.|+ .+|..|+++++|++|+|++|+|++.+|..+.... ...|+|++|.+++.+|.
T Consensus 282 l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 282 LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 99 77999999999999999999998 7888899999999999999999988877665432 23456777777766654
Q ss_pred cccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccc
Q 002349 254 VIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTG 321 (933)
Q Consensus 254 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 321 (933)
. |+.|+++.|... -..+ +.+.+..+..+..+.++....+++|-+.+
T Consensus 360 ~------l~~l~l~~n~~~---~~~~-------------~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 360 E------RRFIEINTDGEP---QREY-------------DSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp C---------------------------------------------------------------CCCG
T ss_pred c------cceeEeeccccc---cccc-------------CCccccccchhhcccccceeeeecccccc
Confidence 3 445555555110 0111 13333334445556666777777777653
No 357
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=6.7e-20 Score=188.66 Aligned_cols=160 Identities=21% Similarity=0.264 Sum_probs=139.0
Q ss_pred CCCCCCccceEecCCCCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCC
Q 002349 52 SSDYCVWRGITCDNVTFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGD 131 (933)
Q Consensus 52 ~~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 131 (933)
..+.|.|+.|.|+ +++++ .+|..+. +.|++|+|++|+|++..+..|.++++|++|+|++|.+++.
T Consensus 7 ~~C~C~~~~v~c~------------~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~ 71 (220)
T 2v9t_B 7 AACTCSNNIVDCR------------GKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71 (220)
T ss_dssp TTSEEETTEEECT------------TSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE
T ss_pred CCCEECCCEEEcC------------CCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc
Confidence 3445666666654 45555 4666554 6899999999999977777899999999999999999988
Q ss_pred CCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCC
Q 002349 132 IPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNC 211 (933)
Q Consensus 132 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 211 (933)
.|..|.++++|++|+|++|+++...+..|..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..+..+
T Consensus 72 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 151 (220)
T 2v9t_B 72 APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151 (220)
T ss_dssp CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred CHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC
Confidence 89999999999999999999997666678999999999999999999889999999999999999999998888889999
Q ss_pred CCCcEEccccccccC
Q 002349 212 TSFQVLDLSYNQLSG 226 (933)
Q Consensus 212 ~~L~~L~L~~N~l~~ 226 (933)
++|+.|+|++|++..
T Consensus 152 ~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 152 RAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred CCCCEEEeCCCCcCC
Confidence 999999999999864
No 358
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=3.9e-20 Score=205.94 Aligned_cols=158 Identities=30% Similarity=0.320 Sum_probs=92.7
Q ss_pred ccccccccccCCCCCCCCcc-cCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeecc
Q 002349 333 LFDLNVANNHLEGPIPDNLS-SCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMS 411 (933)
Q Consensus 333 L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 411 (933)
++.|+|++|+|++..+..+. .+++|+.|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44444444444444444444 55555555555555555445555555666666666666655555556666666666666
Q ss_pred CCccCCCCCCCCCCccccccccccCccccccccccc---ccccccceEEccCCccccccchhhcccccc--ceeeecCCC
Q 002349 412 NNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEF---GNLRSVMEIDLSHNHLTGVIPEELSQLQNM--FSLRLDYNN 486 (933)
Q Consensus 412 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L--~~L~l~~N~ 486 (933)
+|+|++..|..|.++++|+.|+|++|+|++..+..| .++++|+.|||++|+|++..+..+..++.+ +.|+|++|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 666665566666666667777777776665444444 457777777777777776655666666653 555555555
Q ss_pred CcCc
Q 002349 487 LSGD 490 (933)
Q Consensus 487 l~~~ 490 (933)
|.|.
T Consensus 201 ~~C~ 204 (361)
T 2xot_A 201 LECD 204 (361)
T ss_dssp EECC
T ss_pred ccCC
Confidence 5443
No 359
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=187.25 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=137.4
Q ss_pred EEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCC-CCccCCCCCceecccccccCCCCCcccccccchhhhhhccc
Q 002349 72 ALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIP-DEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNN 150 (933)
Q Consensus 72 ~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 150 (933)
.+++++++++ .+|..+. ..+++|+|++|+|++..| ..|.++++|++|+|++|.|++..|..|.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4566677777 4676654 356899999999997755 45899999999999999999877788999999999999999
Q ss_pred CccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCC
Q 002349 151 QLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIP 229 (933)
Q Consensus 151 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 229 (933)
++++..|..|+.+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|.+++..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9998888889999999999999999999889999999999999999999999889999999999999999999986443
No 360
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=5.4e-20 Score=204.77 Aligned_cols=179 Identities=22% Similarity=0.252 Sum_probs=152.9
Q ss_pred cccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccc-cccccceecCCcccccCCCccccccccccceeeccC
Q 002349 334 FDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQ-RLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSN 412 (933)
Q Consensus 334 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 412 (933)
+.+++++|+++ .+|..+. ..++.|+|++|+|++..+..|. .+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45677777776 4555443 4589999999999988888888 999999999999999988888999999999999999
Q ss_pred CccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhh---ccccccceeeecCCCCcC
Q 002349 413 NKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEEL---SQLQNMFSLRLDYNNLSG 489 (933)
Q Consensus 413 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~l~~N~l~~ 489 (933)
|+|++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..+ ..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99998888889999999999999999999999999999999999999999997666666 679999999999999998
Q ss_pred cccc-hhhcccc--c-eeecCCCCCCCccc
Q 002349 490 DVMS-LINCLSL--S-VLFIGNPGLCGYWL 515 (933)
Q Consensus 490 ~~~~-~~~~~~~--~-~~~~~N~~~C~~~l 515 (933)
.++. +..+..+ . +.+.+|||.|+|.+
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred cCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 7654 2333332 2 67899999999965
No 361
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=187.20 Aligned_cols=136 Identities=21% Similarity=0.270 Sum_probs=90.3
Q ss_pred CCceeccCcccCCCCC-cccccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCcccccccccc
Q 002349 357 LNSLNVHGNKLNGTIP-PAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLS 435 (933)
Q Consensus 357 L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 435 (933)
++.|++++|+|++..+ ..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 4555555555554433 345666666666666666665555566666666666666666666666666667777777777
Q ss_pred CcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCccc
Q 002349 436 RNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVM 492 (933)
Q Consensus 436 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 492 (933)
+|+|++..|..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|+|+|..+
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 777776667777777777777777777777667777777777777777777766543
No 362
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=1.3e-19 Score=186.53 Aligned_cols=153 Identities=23% Similarity=0.315 Sum_probs=104.8
Q ss_pred ccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCc
Q 002349 335 DLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNK 414 (933)
Q Consensus 335 ~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 414 (933)
.+++++|.++ .+|..+. ++|+.|++++|+|++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|+
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 3444444444 2333332 456666666666665555566666677777777777766666677777777777777777
Q ss_pred cCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCc
Q 002349 415 ISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGD 490 (933)
Q Consensus 415 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 490 (933)
|+...+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..+..+++|+.|+|++|+|.|.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 7755555667777777777777777777777777788888888888888877777777777787777776666543
No 363
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=1.3e-19 Score=213.79 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=35.9
Q ss_pred cchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEcc
Q 002349 140 KQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDL 219 (933)
Q Consensus 140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (933)
.++..+.|+.+.+.+.++ +..|++|+.|+|++|.+... +.+..+++|+.|+|++|.+++..| +..+++|+.|+|
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 344444454444443221 34445555555555554422 134444444444444444443322 444444444444
Q ss_pred cccccc
Q 002349 220 SYNQLS 225 (933)
Q Consensus 220 ~~N~l~ 225 (933)
++|+++
T Consensus 95 s~N~l~ 100 (605)
T 1m9s_A 95 DENKIK 100 (605)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 444443
No 364
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=1.9e-19 Score=212.42 Aligned_cols=173 Identities=24% Similarity=0.389 Sum_probs=88.0
Q ss_pred ccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcE
Q 002349 137 SKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQV 216 (933)
Q Consensus 137 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (933)
..|++|+.|+|++|.+.. +| .++.+++|+.|+|++|++.+..+ +..+++|++|+|++|.+++ +| .+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 344444444444444442 22 34445555555555555543322 4455555555555555543 22 4555555555
Q ss_pred EccccccccCcCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccC
Q 002349 217 LDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLT 296 (933)
Q Consensus 217 L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 296 (933)
|+|++|++++ ++......+|+.|+|++|++++. ..++.+++|+.|+|++|.|++..| +..+++|+.|+|++|+|+
T Consensus 114 L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 114 LSLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEecCCCCCC-CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 5555555542 12111122333333333333332 345566666666666666665544 666666666666666666
Q ss_pred CCCCCccccCCcceEeeecccccccc
Q 002349 297 GHIPPELGNMTKLHYLELNDNQLTGH 322 (933)
Q Consensus 297 ~~~p~~l~~l~~L~~L~L~~N~l~~~ 322 (933)
+. ..+..+++|+.|+|++|.+.+.
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CC--hHHccCCCCCEEEccCCcCcCC
Confidence 43 3466666666666666666643
No 365
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=7.1e-20 Score=197.15 Aligned_cols=186 Identities=25% Similarity=0.382 Sum_probs=95.9
Q ss_pred EeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccc
Q 002349 240 LSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQL 319 (933)
Q Consensus 240 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 319 (933)
+.+..+.+++..+ +..+++|+.|++++|.++.. + .+..+++|++|+|++|++++..+ +..+++|++|++++|++
T Consensus 29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 3444444443221 23455555555555555533 1 24455555555555555553322 44455555555555544
Q ss_pred cccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCcccc
Q 002349 320 TGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVEL 399 (933)
Q Consensus 320 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 399 (933)
++. + .+..+++|++|++++|++++. ..+..+++|++|++++|++++. ..+
T Consensus 103 ~~~-------------------------~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l 152 (291)
T 1h6t_A 103 KDL-------------------------S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVL 152 (291)
T ss_dssp CCG-------------------------G-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGG
T ss_pred CCC-------------------------h-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhh
Confidence 421 1 244445555555555555432 2345555555555555555543 345
Q ss_pred ccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCcccc
Q 002349 400 SRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTG 465 (933)
Q Consensus 400 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 465 (933)
..+++|+.|+|++|++++..+ +..+++|+.|+|++|++++. | .+.++++|+.|++++|+++.
T Consensus 153 ~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 153 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 555666666666666654333 55566666666666666643 2 25666666666666666654
No 366
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=7e-19 Score=182.29 Aligned_cols=156 Identities=20% Similarity=0.268 Sum_probs=115.1
Q ss_pred ccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccC
Q 002349 333 LFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSN 412 (933)
Q Consensus 333 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 412 (933)
.+.++.+++++. .+|..+. ++|+.|+|++|++++..|..|..+++|++|+|++|+++...+..|..+++|+.|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 344555555554 3443332 5677777777777766667777777777777777777665556667777788888888
Q ss_pred CccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCccc
Q 002349 413 NKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVM 492 (933)
Q Consensus 413 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 492 (933)
|+|++..+..|..+++|+.|+|++|+|+ .+|..+.++++|+.|+|++|+|++..+..+..+++|+.|+|++|+|.|..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8887666667778888888888888888 667778888888888888888887777778888888888888888887765
No 367
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2.3e-19 Score=193.14 Aligned_cols=191 Identities=24% Similarity=0.318 Sum_probs=131.2
Q ss_pred CCCCcEEccccccccCcCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEe
Q 002349 211 CTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYL 290 (933)
Q Consensus 211 l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 290 (933)
+.++..+.+..+.+++..+. -...++++|++++|.++.. + .+..+++|++|+|++|++++..+ +.++++|++|+|
T Consensus 23 l~~~~~~~l~~~~~~~~~~~-~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l 97 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHHHHTTCSCTTSEECH-HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred HHHHHHHHhcCCCcccccch-hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence 34455566777777643322 2345799999999999865 3 48889999999999999997665 999999999999
Q ss_pred eCCccCCCCCCccccCCcceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCC
Q 002349 291 HSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGT 370 (933)
Q Consensus 291 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 370 (933)
++|++++ + ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 98 ~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 98 DENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp CSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 9999996 3 3489999999999999999853 4566777777777777777643 3455566666666666666543
Q ss_pred CCcccccccccceecCCcccccCCCccccccccccceeeccCCccC
Q 002349 371 IPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKIS 416 (933)
Q Consensus 371 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 416 (933)
.+ +..+++|++|++++|.+++. + .+..+++|+.|++++|+++
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred hh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 32 55555555555555555432 1 2444444444444444444
No 368
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=3.8e-21 Score=225.55 Aligned_cols=217 Identities=22% Similarity=0.212 Sum_probs=178.7
Q ss_pred ccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcE
Q 002349 137 SKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQV 216 (933)
Q Consensus 137 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (933)
..+++|+.|+|++|+++ .+|..+++|++|+.|++++|.....++. .+..+.+.+.+|..++++++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHHHHhccc
Confidence 56889999999999998 7899999999999999977653211221 11233455678889999999999
Q ss_pred Ec-cccccccCcCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCcc
Q 002349 217 LD-LSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKL 295 (933)
Q Consensus 217 L~-L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 295 (933)
|+ ++.|.+. +|..+.+.+|.++...+ ..|+.|+|++|.|++ +|. |+++++|+.|+|++|+|
T Consensus 414 L~~l~~n~~~----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l 475 (567)
T 1dce_A 414 VDPMRAAYLD----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRL 475 (567)
T ss_dssp HCGGGHHHHH----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCC
T ss_pred Ccchhhcccc----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccc
Confidence 99 7888764 56677888888875433 248999999999996 565 99999999999999999
Q ss_pred CCCCCCccccCCcceEeeeccccccccCCccccccccccccccccccCCCCC-CCCcccCCCCCceeccCcccCCCCCc-
Q 002349 296 TGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPI-PDNLSSCTNLNSLNVHGNKLNGTIPP- 373 (933)
Q Consensus 296 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~~~~~~- 373 (933)
+ .+|..++++++|+.|+|++|+|++ +| .++.+++|+.|+|++|+|++.. |..+..+++|+.|+|++|++++.+|.
T Consensus 476 ~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 476 R-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp C-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred c-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 9 789999999999999999999996 56 8999999999999999999876 99999999999999999999976553
Q ss_pred --ccccccccceecC
Q 002349 374 --AFQRLESMTYLNL 386 (933)
Q Consensus 374 --~~~~l~~L~~L~L 386 (933)
.+..+++|+.|++
T Consensus 553 ~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 553 ERLAEMLPSVSSILT 567 (567)
T ss_dssp THHHHHCTTCSEEEC
T ss_pred HHHHHHCcccCccCC
Confidence 2445889998864
No 369
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=2e-18 Score=182.83 Aligned_cols=171 Identities=20% Similarity=0.278 Sum_probs=118.0
Q ss_pred cccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEE
Q 002349 138 KLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVL 217 (933)
Q Consensus 138 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (933)
.+.++..+++++|.+++. + .+..+++|+.|++++|+++. ++ .+..+++|++|+|++|++++..+ +.++++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 466677777777777643 2 46677777777777777763 33 56677777777777777775443 7777777777
Q ss_pred ccccccccCcCCCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCC
Q 002349 218 DLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTG 297 (933)
Q Consensus 218 ~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 297 (933)
+|++|++++ +|.... .+|++|+|++|++++. ..+..+++|+.|+|++|++++. + .++.+++|+.|+|++|++++
T Consensus 91 ~L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 91 SVNRNRLKN-LNGIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp ECCSSCCSC-CTTCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred ECCCCccCC-cCcccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 777777764 333222 5666677777766653 3467778888888888888765 2 57777888888888888875
Q ss_pred CCCCccccCCcceEeeecccccccc
Q 002349 298 HIPPELGNMTKLHYLELNDNQLTGH 322 (933)
Q Consensus 298 ~~p~~l~~l~~L~~L~L~~N~l~~~ 322 (933)
. ..+..+++|+.|++++|.+++.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 5 5677777888888888877754
No 370
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.75 E-value=1.6e-18 Score=182.91 Aligned_cols=136 Identities=19% Similarity=0.215 Sum_probs=106.6
Q ss_pred cCcceeeecccceeEEEEEE-cCCce--EEEEEecccCch------------------------hHHHHHHHHHHHhcCC
Q 002349 600 LSEKYIIGYGASSTVYKCVL-KNCKP--VAIKRLYSHYPQ------------------------CLKEFETELETVGSIK 652 (933)
Q Consensus 600 ~~~~~~lG~G~~g~Vy~~~~-~~~~~--vavK~~~~~~~~------------------------~~~~~~~E~~~l~~l~ 652 (933)
|+..+.||+|+||.||+|.+ .+|+. ||||+++..... ....+.+|++++++++
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999998 67888 999987543211 1135789999999998
Q ss_pred CCce--eeeeeEEecCCccEEEEEecCC-C----CHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhh-cCCCCCeeec
Q 002349 653 HRNL--VSLQGYSLSSSGNLLFYDFMEN-G----SLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLH-HDCSPRIIHR 724 (933)
Q Consensus 653 h~ni--v~~~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH-~~~~~~ivH~ 724 (933)
|+++ ..++++ ...++||||+.+ | +|.+.... .++..+..++.|++.||.||| +. +|+||
T Consensus 129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~------~~~~~~~~i~~qi~~~l~~lH~~~---givHr 195 (258)
T 1zth_A 129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE------LKELDVEGIFNDVVENVKRLYQEA---ELVHA 195 (258)
T ss_dssp HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG------GGGSCHHHHHHHHHHHHHHHHHTS---CEECS
T ss_pred hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc------cChHHHHHHHHHHHHHHHHHHHHC---CEEeC
Confidence 8764 333332 367899999942 3 67766521 234567889999999999999 76 99999
Q ss_pred cCCCCceEeCCCCCeEEeeccccccc
Q 002349 725 DVKSSNILLDKDFEAHLTDFGIAKSL 750 (933)
Q Consensus 725 Dikp~NIll~~~~~~kl~DfGla~~~ 750 (933)
||||+|||++. .++|+|||+|...
T Consensus 196 Dlkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 196 DLSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp SCSTTSEEESS--SEEECCCTTCEET
T ss_pred CCCHHHEEEcC--cEEEEECcccccC
Confidence 99999999998 9999999999754
No 371
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=1.4e-18 Score=184.01 Aligned_cols=170 Identities=21% Similarity=0.319 Sum_probs=91.7
Q ss_pred cccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccccccccccc
Q 002349 258 MQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLN 337 (933)
Q Consensus 258 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~ 337 (933)
+.++..++++.|.+++.. .+..+++|+.|++++|.++. ++ .+..+++|++|+|++|++++..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344455555555554322 34455555555555555552 23 45555555555555555554332 55555555555
Q ss_pred cccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCC
Q 002349 338 VANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISG 417 (933)
Q Consensus 338 L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 417 (933)
+++|++++ +|. +.. ++|+.|++++|++++. ..+..+++|++|++++|++++. + .+..+++|+.|+|++|++++
T Consensus 92 L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 55555553 222 112 5666666666666542 2455666666666666666643 2 45556666666666666654
Q ss_pred CCCCCCCCccccccccccCcccccc
Q 002349 418 SIPSPLGDLEHLLKLNLSRNQLTGF 442 (933)
Q Consensus 418 ~~p~~~~~l~~L~~L~Ls~N~l~~~ 442 (933)
. ..+..+++|+.|++++|.+++.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 3 4555666666666666666543
No 372
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=5.2e-19 Score=214.05 Aligned_cols=142 Identities=21% Similarity=0.275 Sum_probs=62.4
Q ss_pred CCccccCCcceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCccccccc
Q 002349 300 PPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLE 379 (933)
Q Consensus 300 p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 379 (933)
+..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.|+ .+|..|..+++|+.|+|++|+|+ .+|..|+.++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 444444444445555544444 33434444444444444444444 34444444444444444444444 3344444444
Q ss_pred ccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccc-cccccccCccccccccc
Q 002349 380 SMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEH-LLKLNLSRNQLTGFIPG 445 (933)
Q Consensus 380 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~ 445 (933)
+|++|+|++|.|+ .+|..|..+++|+.|+|++|.|++.+|..+..+.. +..|+|++|.+++.+|.
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 4444444444444 33444444444444444444444444444333211 12244555555544443
No 373
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=6.5e-18 Score=170.67 Aligned_cols=105 Identities=23% Similarity=0.349 Sum_probs=46.4
Q ss_pred CCCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEe
Q 002349 115 CSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFD 194 (933)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 194 (933)
+++|++|+|++|.++ .+| .+..+++|++|++++|.++. +..++.+++|++|++++|++++..+..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 333444444444333 223 23334444444444443321 12344444444444444444444444444444455555
Q ss_pred ccCccccCccCcCCcCCCCCcEEcccccc
Q 002349 195 VRNNSLTGSIPQNIGNCTSFQVLDLSYNQ 223 (933)
Q Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~N~ 223 (933)
+++|.+++..|..++.+++|++|++++|+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 55555544444445555555555555554
No 374
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=9.7e-18 Score=168.52 Aligned_cols=112 Identities=22% Similarity=0.353 Sum_probs=60.2
Q ss_pred ccceecCCcccccCCCcc-ccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEc
Q 002349 380 SMTYLNLSLNNIRGPIPV-ELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDL 458 (933)
Q Consensus 380 ~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 458 (933)
+|++|++++|++++..+. .|..+++|++|+|++|+|++..|..|..+++|++|+|++|+|++..|..|.++++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 444555555555433332 2455555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCccccccchhhccccccceeeecCCCCcCcc
Q 002349 459 SHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDV 491 (933)
Q Consensus 459 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 491 (933)
++|+|++.+|..+..+++|++|+|++|+|+|..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 555555555555555555555555555555543
No 375
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=1.2e-17 Score=167.80 Aligned_cols=180 Identities=20% Similarity=0.249 Sum_probs=120.8
Q ss_pred cccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCc-ccccccccceecCCcccccCCCccccccccccceeeccC
Q 002349 334 FDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPP-AFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSN 412 (933)
Q Consensus 334 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 412 (933)
+.+++++|+++ .+|..+.. +|++|++++|++++..+. .|..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 44555555554 34443332 677777777777755553 477788888888888888877778888888888888888
Q ss_pred CccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCccc
Q 002349 413 NKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVM 492 (933)
Q Consensus 413 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 492 (933)
|+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|++++..+... -...++...+.++...|..|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCC
Confidence 88887777788888888888888888888888888888999999999999887665211 11223444555666665444
Q ss_pred chhhccccc-eeecCCCCCCCcccCCcc
Q 002349 493 SLINCLSLS-VLFIGNPGLCGYWLHSAC 519 (933)
Q Consensus 493 ~~~~~~~~~-~~~~~N~~~C~~~l~~~~ 519 (933)
.- +.... ..+..+...|...-...|
T Consensus 167 ~~--l~~~~l~~l~~~~~~C~~~~~~~c 192 (192)
T 1w8a_A 167 SK--VRDVQIKDLPHSEFKCSSENSEGC 192 (192)
T ss_dssp TT--TTTSBGGGSCTTTCCCCCC---CC
T ss_pred hH--HcCCChhhCcHhhcCcCCCCCCCC
Confidence 31 12222 234556666765544433
No 376
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=7.9e-18 Score=170.07 Aligned_cols=108 Identities=21% Similarity=0.373 Sum_probs=43.1
Q ss_pred ccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCc-cCCCCCCCCCCccccc
Q 002349 352 SSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNK-ISGSIPSPLGDLEHLL 430 (933)
Q Consensus 352 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~ 430 (933)
..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|+|++|. ++ .+| .+..+++|+
T Consensus 85 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~ 162 (197)
T 4ezg_A 85 SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELK 162 (197)
T ss_dssp TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCC
T ss_pred hcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCC
Confidence 333444444444444443333334444444444444444443334444444444444444444 22 222 233344444
Q ss_pred cccccCcccccccccccccccccceEEccCCcc
Q 002349 431 KLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHL 463 (933)
Q Consensus 431 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 463 (933)
.|++++|++++. + .+.++++|+.|++++|++
T Consensus 163 ~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 163 SLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 444444444321 1 333444444444444443
No 377
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=4.3e-18 Score=186.94 Aligned_cols=219 Identities=13% Similarity=0.065 Sum_probs=148.8
Q ss_pred ccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccc----cccCCcccccccc
Q 002349 257 LMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQL----TGHIPPALGKLTD 332 (933)
Q Consensus 257 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l----~~~~~~~l~~l~~ 332 (933)
.+++|+.|+|.+ .++.+.+.+|.++++|+.|++.+|.+....+.+|..+.++..+.+..+.. .......|.++..
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 388888888888 77777778888888888888888888777777888877777777665322 2222334444455
Q ss_pred cc-ccccccccCCCCCCCC----cccCCCCCceeccCcccCCCCCccc-ccccccceecCCcccccCCCccccccccccc
Q 002349 333 LF-DLNVANNHLEGPIPDN----LSSCTNLNSLNVHGNKLNGTIPPAF-QRLESMTYLNLSLNNIRGPIPVELSRIGNLD 406 (933)
Q Consensus 333 L~-~L~L~~N~l~~~~p~~----l~~l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 406 (933)
|+ .+.+.... .++.. -....+++.+.+.++-.. .....+ ..+++|+.|+|++|+++......|.++++|+
T Consensus 178 L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 178 LETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred cceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 44 23222211 11110 012344455555544211 111111 2367888888888888877777788888888
Q ss_pred eeeccCCccCCCCCCCCCCccccc-cccccCcccccccccccccccccceEEccCCccccccchhhccccccceeee
Q 002349 407 TLDMSNNKISGSIPSPLGDLEHLL-KLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRL 482 (933)
Q Consensus 407 ~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 482 (933)
.|+|.+| ++.+.+..|.++.+|+ .|++.+ +++.+.+.+|.++++|+.|++++|+++...+..|.++++|+.++.
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8888887 7767777888888888 888888 777677788888888888888888888777788888888887753
No 378
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=1.3e-17 Score=183.08 Aligned_cols=290 Identities=14% Similarity=0.133 Sum_probs=155.2
Q ss_pred cccCCCCCC--CCCccEEEccCCcccccCCCCccC-CCCCceecccccccC--CCCCcccccccchhhhhhcccCccCCC
Q 002349 82 GEISPAVGD--LKDLQSIDLRGNRLSGQIPDEIGD-CSSLKSLDLSFNELY--GDIPFSISKLKQLEFLILKNNQLIGPI 156 (933)
Q Consensus 82 ~~~~~~l~~--l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~ 156 (933)
|.++..+.. +.+|+.|.++++ +.+.--..+.. +++|++|||++|++. ...+..+ +.++.+.+..|.+.
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~--- 85 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVP--- 85 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEEC---
T ss_pred CcHHhhccchhhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccccC---
Confidence 344444443 667788888764 22111112333 778888888888887 2222122 22333444444322
Q ss_pred Cccccc--------CCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccc----
Q 002349 157 PSTLSQ--------LPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQL---- 224 (933)
Q Consensus 157 p~~l~~--------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l---- 224 (933)
+..|.+ +++|+.|+|.+ +++...+..|.++++|+.+++++|.+....+.+|.++.++..+.++.+..
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~ 164 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK 164 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc
Confidence 234555 88888888887 77766666788888888888888888766677787777777777665322
Q ss_pred cCcCCCCc-cccccc-eEeccccccccccCccc----cccccccEEeccCCcCcCCCCCCC-CCCCCccEEEeeCCccCC
Q 002349 225 SGEIPFNI-GFLQIA-TLSLQGNQLTGKIPSVI----GLMQALAVLDLSCNMLSGPIPPIL-GNLSYTEKLYLHSNKLTG 297 (933)
Q Consensus 225 ~~~~p~~~-~~~~L~-~L~L~~n~l~~~~p~~~----~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~ 297 (933)
.......+ ....++ .+.+.... .++..+ -...+++.+.+.++-.. .....+ ..+++|+.|+|++|+++.
T Consensus 165 ~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~ 240 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATT 240 (329)
T ss_dssp TTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCE
T ss_pred ccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcce
Confidence 10001111 111222 12221110 011110 11233444444433111 000011 124556666666666654
Q ss_pred CCCCccccCCcceEeeeccccccccCCcccccccccc-ccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccc
Q 002349 298 HIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLF-DLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQ 376 (933)
Q Consensus 298 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 376 (933)
+.+.+|.++++|+.|+|.+| ++.+.+.+|.++++|+ .+++.+ .++.+.+..|.+|++|+.+++++|+++.+.+.+|.
T Consensus 241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence 44555666666666666665 5545555666666666 666665 55545556666666666666666666655566676
Q ss_pred cccccceec
Q 002349 377 RLESMTYLN 385 (933)
Q Consensus 377 ~l~~L~~L~ 385 (933)
++++|+.++
T Consensus 319 ~~~~L~~ly 327 (329)
T 3sb4_A 319 NGVPSKLIY 327 (329)
T ss_dssp TTCCCCEEE
T ss_pred CCcchhhhc
Confidence 666666664
No 379
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=1.1e-16 Score=157.03 Aligned_cols=133 Identities=22% Similarity=0.209 Sum_probs=110.4
Q ss_pred CCCccEEEccCCccc-ccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCcee
Q 002349 91 LKDLQSIDLRGNRLS-GQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVF 169 (933)
Q Consensus 91 l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 169 (933)
.++|++|+|++|+++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 477888888888887 77888888888888888888888855 678888888888888888887778778888899999
Q ss_pred eeecCCCCCCc-ccccccCCCCcEEeccCccccCccC---cCCcCCCCCcEEcccccccc
Q 002349 170 GLRGNNLVGTL-SPDMCQLSGLWYFDVRNNSLTGSIP---QNIGNCTSFQVLDLSYNQLS 225 (933)
Q Consensus 170 ~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~N~l~ 225 (933)
+|++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99999888643 2678888899999999998886544 47888899999999988876
No 380
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=2.4e-16 Score=156.15 Aligned_cols=136 Identities=21% Similarity=0.248 Sum_probs=91.6
Q ss_pred CCCCCCccceEecCCCCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCC
Q 002349 52 SSDYCVWRGITCDNVTFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGD 131 (933)
Q Consensus 52 ~~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 131 (933)
..+.|.|+++.|++. +++ .+|..+ .++|++|+|++|++++..+..|+++++|++|+|++|.+++.
T Consensus 3 ~~C~C~~~~l~~~~~------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 67 (177)
T 2o6r_A 3 SRCSCSGTEIRCNSK------------GLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67 (177)
T ss_dssp TTCEEETTEEECCSS------------CCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CCCEeCCCEEEecCC------------CCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe
Confidence 345678888888643 333 344333 26788899999988866666778888888888888888865
Q ss_pred CCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccC
Q 002349 132 IPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTG 202 (933)
Q Consensus 132 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 202 (933)
.+..|..+++|++|+|++|++++..+..++.+++|++|+|++|++++..+..+..+++|++|++++|.+.+
T Consensus 68 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 68 PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 55556777777777777777776555556667777777777766664444344555555555555555553
No 381
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=3.9e-16 Score=156.69 Aligned_cols=129 Identities=28% Similarity=0.383 Sum_probs=101.4
Q ss_pred CceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCc
Q 002349 358 NSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRN 437 (933)
Q Consensus 358 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 437 (933)
+.+++++|+++ .+|..+. ++|++|+|++|+++ .+|..|..+++|+.|+|++|.|++..+..|.++++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45677777776 3444332 46778888888887 56677888888888888888888777778888888888888888
Q ss_pred ccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCc
Q 002349 438 QLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGD 490 (933)
Q Consensus 438 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 490 (933)
+|++..|..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|+|.|.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 88888888888888999999999998877777788888888888877766654
No 382
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=1.3e-16 Score=153.17 Aligned_cols=128 Identities=21% Similarity=0.225 Sum_probs=93.3
Q ss_pred CCCccEEEccCCccc-ccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCcee
Q 002349 91 LKDLQSIDLRGNRLS-GQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVF 169 (933)
Q Consensus 91 l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 169 (933)
.++|++|++++|.++ +.+|..++.+++|++|+|++|.+++. ..++.+++|++|+|++|.+++.+|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356777777777776 66777777777777777777777754 567777777777777777776677777777777777
Q ss_pred eeecCCCCCC-cccccccCCCCcEEeccCccccCccC---cCCcCCCCCcEEccc
Q 002349 170 GLRGNNLVGT-LSPDMCQLSGLWYFDVRNNSLTGSIP---QNIGNCTSFQVLDLS 220 (933)
Q Consensus 170 ~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~ 220 (933)
++++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777753 34667777788888888887776544 467778888888775
No 383
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=2.3e-16 Score=154.81 Aligned_cols=133 Identities=21% Similarity=0.250 Sum_probs=71.1
Q ss_pred CCCceeccCcccC-CCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccc
Q 002349 356 NLNSLNVHGNKLN-GTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNL 434 (933)
Q Consensus 356 ~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 434 (933)
+|+.|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|+.|+|
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3444444444444 33444444444444444444444433 44445555555555555555444444444555555555
Q ss_pred cCccccccc-ccccccccccceEEccCCccccccc---hhhccccccceeeecCCCCcCc
Q 002349 435 SRNQLTGFI-PGEFGNLRSVMEIDLSHNHLTGVIP---EELSQLQNMFSLRLDYNNLSGD 490 (933)
Q Consensus 435 s~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~l~~N~l~~~ 490 (933)
++|++++.. +..+.++++|+.|++++|++++..+ ..+..+++|++|++++|.+...
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 555555432 2556666666666666666665444 3566666666666666666544
No 384
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.62 E-value=1.4e-16 Score=173.89 Aligned_cols=137 Identities=13% Similarity=0.088 Sum_probs=100.6
Q ss_pred cCcceeeecccceeEEEEEEcCCceEEEEEecccCch--------------hHH--------HHHHHHHHHhcCCCCcee
Q 002349 600 LSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQ--------------CLK--------EFETELETVGSIKHRNLV 657 (933)
Q Consensus 600 ~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~--------------~~~--------~~~~E~~~l~~l~h~niv 657 (933)
|++...||+|+||.||+|...+|+.||||+++..... ... ...+|...|.++.+.++.
T Consensus 97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~ 176 (397)
T 4gyi_A 97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFP 176 (397)
T ss_dssp SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8889999999999999999999999999987532100 001 124567777777544432
Q ss_pred eeeeEEecCCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCC
Q 002349 658 SLQGYSLSSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDF 737 (933)
Q Consensus 658 ~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~ 737 (933)
...-+.. ...++||||++|++|.++.. .+....++.|++.+|.|||++ |||||||||.|||+++++
T Consensus 177 vp~p~~~--~~~~LVME~i~G~~L~~l~~---------~~~~~~l~~qll~~l~~lH~~---gIVHrDLKp~NILl~~dg 242 (397)
T 4gyi_A 177 VPEPIAQ--SRHTIVMSLVDALPMRQVSS---------VPDPASLYADLIALILRLAKH---GLIHGDFNEFNILIREEK 242 (397)
T ss_dssp CCCEEEE--ETTEEEEECCSCEEGGGCCC---------CSCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEEEEE
T ss_pred CCeeeec--cCceEEEEecCCccHhhhcc---------cHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeCCC
Confidence 2111111 23579999999988876542 123457889999999999976 999999999999998776
Q ss_pred ----------CeEEeeccccccc
Q 002349 738 ----------EAHLTDFGIAKSL 750 (933)
Q Consensus 738 ----------~~kl~DfGla~~~ 750 (933)
.+.|+||+-+...
T Consensus 243 d~~d~~~~~~~~~iID~~Q~V~~ 265 (397)
T 4gyi_A 243 DAEDPSSITLTPIIIXFPQMVSM 265 (397)
T ss_dssp CSSCTTSEEEEEEECCCTTCEET
T ss_pred CcccccccccceEEEEeCCcccC
Confidence 3899999987643
No 385
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=153.57 Aligned_cols=125 Identities=27% Similarity=0.368 Sum_probs=76.6
Q ss_pred EEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhcccCc
Q 002349 73 LNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQL 152 (933)
Q Consensus 73 l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 152 (933)
+++++++++ .+|..+. ++|++|+|++|+|+ .+|..|.++++|++|+|++|.|++..|..|.++++|++|+|++|++
T Consensus 15 l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 15 VRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 445555665 4555443 46777777777776 5667777777777777777777765556666666666666666666
Q ss_pred cCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCcccc
Q 002349 153 IGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLT 201 (933)
Q Consensus 153 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 201 (933)
++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6655555666666666666666665433334444444444444444443
No 386
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=1.1e-15 Score=151.45 Aligned_cols=135 Identities=21% Similarity=0.294 Sum_probs=95.5
Q ss_pred CCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccC
Q 002349 357 LNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSR 436 (933)
Q Consensus 357 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 436 (933)
.+.+++++|+++. +|..+ .++|++|++++|++++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3456666666653 33222 24667777777777766556667777777777777777766666677777888888888
Q ss_pred cccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcccch
Q 002349 437 NQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSL 494 (933)
Q Consensus 437 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 494 (933)
|+|++..+..|.++++|++|+|++|++++..+..+..+++|+.|+|++|+++|..+.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l 143 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccH
Confidence 8888776777778888888888888888666666777888888888888888876643
No 387
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=3.8e-16 Score=149.88 Aligned_cols=126 Identities=19% Similarity=0.312 Sum_probs=64.8
Q ss_pred CCCceeccCcccC-CCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccc
Q 002349 356 NLNSLNVHGNKLN-GTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNL 434 (933)
Q Consensus 356 ~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 434 (933)
+|+.|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|+|++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3344444444443 33333344444444444444444433 33444445555555555554444444444555555555
Q ss_pred cCcccccc-cccccccccccceEEccCCccccccc---hhhccccccceeeec
Q 002349 435 SRNQLTGF-IPGEFGNLRSVMEIDLSHNHLTGVIP---EELSQLQNMFSLRLD 483 (933)
Q Consensus 435 s~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~l~ 483 (933)
++|++++. .+..+.++++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555542 23556666666666666666665544 456666677766664
No 388
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=1.3e-14 Score=162.58 Aligned_cols=210 Identities=14% Similarity=0.157 Sum_probs=108.2
Q ss_pred ccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccc
Q 002349 250 KIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGK 329 (933)
Q Consensus 250 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 329 (933)
..+..|..+++|+.++|+.|.++.+....|. ..+|+.+.|..+ ++.+...+|.++++|+.+++..| ++.+...+|.+
T Consensus 171 I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~ 247 (401)
T 4fdw_A 171 LKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE 247 (401)
T ss_dssp ECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT
T ss_pred ehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc
Confidence 3344455555566666655555544444444 355555555532 44344445555555555555543 33333344444
Q ss_pred cccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceee
Q 002349 330 LTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLD 409 (933)
Q Consensus 330 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 409 (933)
.+|+.+.+ .+.+.......|.+|++|+.+++.+|.+.. +.+.......|.++++|+.++
T Consensus 248 -~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~ 306 (401)
T 4fdw_A 248 -SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFND-------------------DPEAMIHPYCLEGCPKLARFE 306 (401)
T ss_dssp -CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEECTTTTTTCTTCCEEC
T ss_pred -CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccC-------------------CcccEECHHHhhCCccCCeEE
Confidence 44555555 233333334444455555555554444320 000023344555556666666
Q ss_pred ccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhcccc-ccceeeecCCC
Q 002349 410 MSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQ-NMFSLRLDYNN 486 (933)
Q Consensus 410 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~l~~N~ 486 (933)
|. +.++......|.++++|+.|+|..| ++.+.+.+|.++ +|+.+++++|.+....+..|..++ ++..|.+..|.
T Consensus 307 l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 307 IP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred eC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 65 3355455556666666666666443 555556666666 666666666666655556666653 45666665543
No 389
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=2.1e-14 Score=161.00 Aligned_cols=221 Identities=13% Similarity=0.122 Sum_probs=154.9
Q ss_pred cccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCccccccccccccccc
Q 002349 260 ALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVA 339 (933)
Q Consensus 260 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~ 339 (933)
+|+.+++..| ++.+...+|.+ .+|+.+.|.. .++.+.+.+|.++++|+.+++++|+++.+....|. ..+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 4555555444 44344455555 3466666653 44444455666666666666666666644444444 4666666666
Q ss_pred cccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccC---
Q 002349 340 NNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKIS--- 416 (933)
Q Consensus 340 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--- 416 (933)
++ +.......|.++++|+.+++..| ++.+...+|.+ .+|+.+.+ .|.++......|.++++|+.+++.+|.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 33 55455566777777777777764 44455566666 67777777 45566566677888888888888887664
Q ss_pred --CCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCCcCcc
Q 002349 417 --GSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNLSGDV 491 (933)
Q Consensus 417 --~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 491 (933)
...+..|.++++|+.++|. |.++.+...+|.++.+|+.++|.+| ++...+.+|.++ +|+.+++++|.+....
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 4667889999999999999 5588788899999999999999665 887778999999 9999999999876543
No 390
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=2.8e-17 Score=166.17 Aligned_cols=150 Identities=22% Similarity=0.288 Sum_probs=112.5
Q ss_pred cEEEEEcCCCCcCcccCC------CCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccch
Q 002349 69 TVIALNLSGLNLDGEISP------AVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQL 142 (933)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 142 (933)
.|+.++++++.++|.+|+ .+..+++|++|+|++|++++ +| .++++++|++|+|++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 445556666667776665 77788888888888888885 66 7888888888888888887 677777777888
Q ss_pred hhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcc-cccccCCCCcEEeccCccccCccCcC----------CcCC
Q 002349 143 EFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLS-PDMCQLSGLWYFDVRNNSLTGSIPQN----------IGNC 211 (933)
Q Consensus 143 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~----------l~~l 211 (933)
++|+|++|++++ +| .++.+++|++|+|++|++++..+ ..+..+++|++|++++|.+++.+|.. +..+
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 888888888875 44 57788888888888888875332 46777888888888888887665553 6777
Q ss_pred CCCcEEcccccccc
Q 002349 212 TSFQVLDLSYNQLS 225 (933)
Q Consensus 212 ~~L~~L~L~~N~l~ 225 (933)
++|+.|| +|.++
T Consensus 174 ~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 174 PNLKKLD--GMPVD 185 (198)
T ss_dssp SSCSEEC--CGGGT
T ss_pred CCcEEEC--CcccC
Confidence 7777776 55554
No 391
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=1e-16 Score=162.00 Aligned_cols=152 Identities=22% Similarity=0.287 Sum_probs=91.6
Q ss_pred cccccccccccccCCCCCCC------CcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCcccccccc
Q 002349 330 LTDLFDLNVANNHLEGPIPD------NLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIG 403 (933)
Q Consensus 330 l~~L~~L~L~~N~l~~~~p~------~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 403 (933)
...++.++++.+.+.+..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34455555555555544444 55566666666666666664 34 5666666666666666666 4455555556
Q ss_pred ccceeeccCCccCCCCCCCCCCccccccccccCcccccccc-cccccccccceEEccCCccccccchh----------hc
Q 002349 404 NLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIP-GEFGNLRSVMEIDLSHNHLTGVIPEE----------LS 472 (933)
Q Consensus 404 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------~~ 472 (933)
+|+.|+|++|++++ +| .+..+++|+.|+|++|++++..+ ..+.++++|++|++++|++++.+|.. +.
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 66666666666664 33 45666666677777776664332 45667777777777777776665542 66
Q ss_pred cccccceeeecCCCCc
Q 002349 473 QLQNMFSLRLDYNNLS 488 (933)
Q Consensus 473 ~l~~L~~L~l~~N~l~ 488 (933)
.+++|+.|| +|.++
T Consensus 172 ~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVD 185 (198)
T ss_dssp HCSSCSEEC--CGGGT
T ss_pred hCCCcEEEC--CcccC
Confidence 677777665 55554
No 392
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=5e-15 Score=146.40 Aligned_cols=134 Identities=25% Similarity=0.334 Sum_probs=107.3
Q ss_pred CCCCCCCCccEEEccCCcccccCCCCccCCC-CCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCC
Q 002349 86 PAVGDLKDLQSIDLRGNRLSGQIPDEIGDCS-SLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLP 164 (933)
Q Consensus 86 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 164 (933)
+.+.++.+|++|+|++|+++ .+|. +..+. +|++|+|++|.+++. ..|+.+++|++|+|++|++++..+..++.++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 34567788999999999988 4554 55554 899999999998854 5788889999999999999865445558899
Q ss_pred CCceeeeecCCCCCCccc--ccccCCCCcEEeccCccccCccCcC----CcCCCCCcEEcccccccc
Q 002349 165 NLKVFGLRGNNLVGTLSP--DMCQLSGLWYFDVRNNSLTGSIPQN----IGNCTSFQVLDLSYNQLS 225 (933)
Q Consensus 165 ~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~~N~l~ 225 (933)
+|++|+|++|+++ .+|. .+..+++|++|++++|.++ .+|.. +..+++|++||++.|.+.
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999999986 4555 7888899999999999988 45664 788899999999888765
No 393
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.52 E-value=7.9e-14 Score=156.91 Aligned_cols=329 Identities=12% Similarity=0.083 Sum_probs=151.0
Q ss_pred CCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCC
Q 002349 86 PAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPN 165 (933)
Q Consensus 86 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 165 (933)
.+|.++++|+.+.|..+ ++..-..+|.+|++|+.++|..+ +.......|.++.+|+.+.+..+ +.......|.++..
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 35677777777777643 55333456777777777777644 33233344666666666555443 22223334444433
Q ss_pred CceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCCCCccccccceEecccc
Q 002349 166 LKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGN 245 (933)
Q Consensus 166 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n 245 (933)
++......... .....|.++++|+.+.+.++..+ .....|.++++|+.+++..| +
T Consensus 142 ~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~--------------------- 196 (394)
T 4fs7_A 142 KEITIPEGVTV--IGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-L--------------------- 196 (394)
T ss_dssp SEEECCTTCCE--ECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-C---------------------
T ss_pred cccccCccccc--cchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-c---------------------
Confidence 33222221111 11233444444555444433211 22233444444444443322 1
Q ss_pred ccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCcceEeeeccccccccCCc
Q 002349 246 QLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLTGHIPP 325 (933)
Q Consensus 246 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 325 (933)
+......|.....|+.+.+..+... +...+....+|+.+.+..+ ++.....
T Consensus 197 --~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-------------------------~~~i~~~ 247 (394)
T 4fs7_A 197 --KIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-------------------------FTELGKS 247 (394)
T ss_dssp --CEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-------------------------CCEECSS
T ss_pred --eEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-------------------------ceecccc
Confidence 1111223334444444444433221 1112222234444444321 1212223
Q ss_pred cccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCcccccccccc
Q 002349 326 ALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNL 405 (933)
Q Consensus 326 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 405 (933)
.|..+..|+.+.+..+... .....|..+..++.+....+.+. ...|..+.+|+.+.+..+ ++.....+|.++.+|
T Consensus 248 ~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL 322 (394)
T ss_dssp TTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCC
Confidence 3344444444444333222 23334444444544444443321 234445555555555433 333334455555666
Q ss_pred ceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCccccccchhhcccccccee
Q 002349 406 DTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSL 480 (933)
Q Consensus 406 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 480 (933)
+.++|.++ ++......|.++.+|+.+++..| ++.+-..+|.++.+|+.+++..| ++ .+...|.+.++|+.+
T Consensus 323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 66666433 44344556666666666666655 55555666777777777766544 22 233455556655543
No 394
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.51 E-value=3.6e-13 Score=151.53 Aligned_cols=322 Identities=11% Similarity=0.059 Sum_probs=201.1
Q ss_pred cEEEEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhc
Q 002349 69 TVIALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILK 148 (933)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 148 (933)
.++.+.|.. +++..-..+|.++++|+.++|.++ ++..-..+|.++.+|+.+.+..+ +......+|.+...+......
T Consensus 72 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~ 148 (394)
T 4fs7_A 72 KVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPE 148 (394)
T ss_dssp TEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCT
T ss_pred CceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCc
Confidence 567778764 466434457999999999999865 55334567999999999988765 332445567666554444433
Q ss_pred ccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcC
Q 002349 149 NNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEI 228 (933)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 228 (933)
.... .....|.++++|+.+.+.++. .......|.++.+|+.+++..| ++......+.++..|+.+.+..+...
T Consensus 149 ~~~~--i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--- 221 (394)
T 4fs7_A 149 GVTV--IGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--- 221 (394)
T ss_dssp TCCE--ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE---
T ss_pred cccc--cchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE---
Confidence 3332 234679999999999997654 3344567889999999999877 55455667889999998887655432
Q ss_pred CCCccccccceEeccccccccccCccccccccccEEeccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccccCCc
Q 002349 229 PFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELGNMTK 308 (933)
Q Consensus 229 p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 308 (933)
+........+|+.+.+..+ ++.+....|.+...|+.+.+..+... .....|..+..
T Consensus 222 ----------------------i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~ 277 (394)
T 4fs7_A 222 ----------------------LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSG 277 (394)
T ss_dssp ----------------------ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTT
T ss_pred ----------------------eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccc
Confidence 1111223356777777643 33355567788888888888776544 55567777777
Q ss_pred ceEeeeccccccccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCc
Q 002349 309 LHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSL 388 (933)
Q Consensus 309 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~ 388 (933)
++.+....+.+. ...|..+.+|+.+.+.++ +......+|.++.+|+.+++.++ +
T Consensus 278 l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v--------------------- 331 (394)
T 4fs7_A 278 LKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V--------------------- 331 (394)
T ss_dssp CCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C---------------------
T ss_pred cceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-c---------------------
Confidence 777777655432 234555555665555433 33233344555555555555422 3
Q ss_pred ccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceE
Q 002349 389 NNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEI 456 (933)
Q Consensus 389 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 456 (933)
+.....+|.++.+|+.++|..| ++......|.++.+|+.+++..+ ++ .+..+|.++++|+.+
T Consensus 332 ---~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 332 ---EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp ---CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred ---cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 3233344555555555555544 44344556666666776666544 33 234567777776654
No 395
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=3.8e-14 Score=139.04 Aligned_cols=111 Identities=22% Similarity=0.333 Sum_probs=84.5
Q ss_pred cceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccC
Q 002349 381 MTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSH 460 (933)
Q Consensus 381 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 460 (933)
.+.+++++|.++ .+|..+. ++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 355666666666 3444442 5777888888888877777788888888888888888877777788888888888888
Q ss_pred CccccccchhhccccccceeeecCCCCcCcccch
Q 002349 461 NHLTGVIPEELSQLQNMFSLRLDYNNLSGDVMSL 494 (933)
Q Consensus 461 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~ 494 (933)
|+|++..+..|..+++|+.|+|++|+|+|..+.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l 121 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI 121 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhH
Confidence 8888777777888888888888888888876543
No 396
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=8.8e-15 Score=144.65 Aligned_cols=133 Identities=20% Similarity=0.215 Sum_probs=80.2
Q ss_pred cccCCCCCceeccCcccCCCCCcccccc-cccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCcccc
Q 002349 351 LSSCTNLNSLNVHGNKLNGTIPPAFQRL-ESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHL 429 (933)
Q Consensus 351 l~~l~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 429 (933)
+..+.+|+.|++++|+++. ++. +..+ ++|++|++++|.+++. ..+..+++|++|+|++|.|++..+..|..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3344455555555555552 232 2222 2566666666666543 455666666666666666664433444666677
Q ss_pred ccccccCccccccccc--ccccccccceEEccCCccccccch----hhccccccceeeecCCCCcC
Q 002349 430 LKLNLSRNQLTGFIPG--EFGNLRSVMEIDLSHNHLTGVIPE----ELSQLQNMFSLRLDYNNLSG 489 (933)
Q Consensus 430 ~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~l~~N~l~~ 489 (933)
++|+|++|+|+ .+|. .+.++++|+.|++++|+++. +|. .+..+++|+.|++++|....
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 77777777775 3444 67777777777777777763 444 37777777777777776653
No 397
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=8.5e-14 Score=136.98 Aligned_cols=109 Identities=23% Similarity=0.363 Sum_probs=80.0
Q ss_pred ceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCC
Q 002349 382 TYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHN 461 (933)
Q Consensus 382 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 461 (933)
+.+++++|+++ .+|..+. ++|+.|+|++|+|++..|..|..+++|++|+|++|+|+++.+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45566666665 4444443 56777777777777777777777888888888888888766666778888888888888
Q ss_pred ccccccchhhccccccceeeecCCCCcCcccc
Q 002349 462 HLTGVIPEELSQLQNMFSLRLDYNNLSGDVMS 493 (933)
Q Consensus 462 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~ 493 (933)
+|++..+..|..+++|+.|+|++|+|.+.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 88876666688888888888888888877654
No 398
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=3.4e-13 Score=132.23 Aligned_cols=108 Identities=27% Similarity=0.367 Sum_probs=87.5
Q ss_pred CCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccC
Q 002349 357 LNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSR 436 (933)
Q Consensus 357 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 436 (933)
.+.+++++|+++. +|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4667777777774 454442 6788888888888877788888888888888888888877777788889999999999
Q ss_pred cccccccccccccccccceEEccCCcccccc
Q 002349 437 NQLTGFIPGEFGNLRSVMEIDLSHNHLTGVI 467 (933)
Q Consensus 437 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 467 (933)
|+|++..+..|.++++|+.|+|++|++++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9999877778999999999999999988654
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=4.7e-13 Score=131.64 Aligned_cols=103 Identities=22% Similarity=0.217 Sum_probs=67.7
Q ss_pred EEEcCCCCcCcccCCCCCCCCCccEEEccCCcccccCCCCccCCCCCceecccccccCCCCCcccccccchhhhhhcccC
Q 002349 72 ALNLSGLNLDGEISPAVGDLKDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQ 151 (933)
Q Consensus 72 ~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 151 (933)
.+++++++++ .+|..+. ++|++|+|++|+|++..|..|+++++|++|+|++|+|++..+..|.++++|++|+|++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 5677777775 5665554 677777777777776667777777777777777777775444445666666666666666
Q ss_pred ccCCCCcccccCCCCceeeeecCCCC
Q 002349 152 LIGPIPSTLSQLPNLKVFGLRGNNLV 177 (933)
Q Consensus 152 l~~~~p~~l~~l~~L~~L~L~~N~l~ 177 (933)
|++..+..|..+++|++|+|++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 66544444666666666666666654
No 400
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=1.7e-12 Score=143.39 Aligned_cols=110 Identities=20% Similarity=0.158 Sum_probs=93.1
Q ss_pred CCCccceEecCCCCcEEEEEcCCCCcCcccCCCCCCCCCccEEEccC-CcccccCCCCccCCCCCceecccccccCCCCC
Q 002349 55 YCVWRGITCDNVTFTVIALNLSGLNLDGEISPAVGDLKDLQSIDLRG-NRLSGQIPDEIGDCSSLKSLDLSFNELYGDIP 133 (933)
Q Consensus 55 ~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 133 (933)
.|.|.+|.|++. |+|+ .+|. |..+++|++|+|++ |+|++..|..|++|++|++|+|++|+|++..|
T Consensus 7 ~C~~~~v~~~~~-----------n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 7 PHGSSGLRCTRD-----------GALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp CSSSSCEECCSS-----------CCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred cccCCEEEcCCC-----------CCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH
Confidence 488888888532 1566 4777 99999999999996 99998777889999999999999999999888
Q ss_pred cccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCC
Q 002349 134 FSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVG 178 (933)
Q Consensus 134 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 178 (933)
..|.+|++|++|+|++|+|++..+..+..++ |+.|+|++|.+..
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8999999999999999999976666666665 9999999998874
No 401
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=6.2e-12 Score=138.84 Aligned_cols=102 Identities=23% Similarity=0.256 Sum_probs=45.0
Q ss_pred eeccCc-ccCCCCCcccccccccceecCCc-ccccCCCccccccccccceeeccCCccCCCCCCCCCCccccccccccCc
Q 002349 360 LNVHGN-KLNGTIPPAFQRLESMTYLNLSL-NNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRN 437 (933)
Q Consensus 360 L~l~~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 437 (933)
++.+++ +|+. +|. +..+++|++|+|++ |.|++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 4442 333 44444444444443 4444444444444444444444444444444444444444444444444
Q ss_pred ccccccccccccccccceEEccCCccc
Q 002349 438 QLTGFIPGEFGNLRSVMEIDLSHNHLT 464 (933)
Q Consensus 438 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 464 (933)
+|++..+..|..++ |+.|+|++|+|.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 44433333333333 444444444444
No 402
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.23 E-value=1.7e-11 Score=129.55 Aligned_cols=148 Identities=16% Similarity=0.090 Sum_probs=115.9
Q ss_pred HHHHHhhccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCC-CCceeeeeeEEecCCccE
Q 002349 592 DIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIK-HRNLVSLQGYSLSSSGNL 670 (933)
Q Consensus 592 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~ 670 (933)
.+....+.|.....+|.|+.+.||++... ++.+++|+...........+.+|+++++.+. +..+.++++++...+..+
T Consensus 8 ~l~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~ 86 (263)
T 3tm0_A 8 ELKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSN 86 (263)
T ss_dssp HHHHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEE
T ss_pred HHHHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceE
Confidence 34556678888888999999999999855 5789999987532223346889999999884 677888999998888899
Q ss_pred EEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC----------------------------------
Q 002349 671 LFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHD---------------------------------- 716 (933)
Q Consensus 671 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---------------------------------- 716 (933)
+||||++|.++.+... +......++.++++++..||+.
T Consensus 87 lv~e~i~G~~l~~~~~--------~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (263)
T 3tm0_A 87 LLMSEADGVLCSEEYE--------DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENW 158 (263)
T ss_dssp EEEECCSSEEHHHHCC--------TTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGG
T ss_pred EEEEecCCeehhhccC--------CcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccc
Confidence 9999999999987641 1122347888999999999971
Q ss_pred ----------------------CCCCeeeccCCCCceEeCCCCCeEEeeccccc
Q 002349 717 ----------------------CSPRIIHRDVKSSNILLDKDFEAHLTDFGIAK 748 (933)
Q Consensus 717 ----------------------~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~ 748 (933)
....++|+|++|.||+++++..+.|+||+.+.
T Consensus 159 ~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 159 EEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp STTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred cccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 01458999999999999876556799999774
No 403
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.23 E-value=6.1e-11 Score=133.22 Aligned_cols=330 Identities=12% Similarity=0.106 Sum_probs=175.0
Q ss_pred CCCccCCC-CCceecccccccCCCCCcccccccchhhhhhcccC---ccCCCCcccccCCCCceeeeecCCCCCCccccc
Q 002349 109 PDEIGDCS-SLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQ---LIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDM 184 (933)
Q Consensus 109 p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 184 (933)
..+|.++. .|+.+.+..+ ++..-..+|.++++|+.+.+..|. ++..-...|.++.+|+.+.+..+ ++......|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 34677774 5888888644 553445667777888887777664 44333456667777776666443 332333455
Q ss_pred ccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCCCCccccccceEeccccccccccCccccccccccEE
Q 002349 185 CQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLSLQGNQLTGKIPSVIGLMQALAVL 264 (933)
Q Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 264 (933)
..+.+|+.+.+..+- .......+..+.+|+.+.+..+ ++ ..-...|. ..+|+.+
T Consensus 134 ~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~-----------------------~I~~~aF~-~~~l~~i 187 (394)
T 4gt6_A 134 HHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VT-----------------------AIEERAFT-GTALTQI 187 (394)
T ss_dssp TTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CC-----------------------EECTTTTT-TCCCSEE
T ss_pred hhhccccccccccee-eeecccceecccccccccccce-ee-----------------------Eecccccc-ccceeEE
Confidence 666666666665432 2233344555566665555432 11 11112222 2345556
Q ss_pred eccCCcCcCCCCCCCCCCCCccEEEeeCCccCCCCCCccc-cCCcceEeeeccccccccCCccccccccccccccccccC
Q 002349 265 DLSCNMLSGPIPPILGNLSYTEKLYLHSNKLTGHIPPELG-NMTKLHYLELNDNQLTGHIPPALGKLTDLFDLNVANNHL 343 (933)
Q Consensus 265 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l 343 (933)
.+..+... ....+|.+..+++......+.... +...+. .......... .+.....+..+.+. +.+
T Consensus 188 ~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ip-~~v 253 (394)
T 4gt6_A 188 HIPAKVTR-IGTNAFSECFALSTITSDSESYPA-IDNVLYEKSANGDYALI-----------RYPSQREDPAFKIP-NGV 253 (394)
T ss_dssp EECTTCCE-ECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEE-----------ECCTTCCCSEEECC-TTE
T ss_pred EECCcccc-cccchhhhccccceeccccccccc-ccceeeccccccccccc-----------ccccccccceEEcC-Ccc
Confidence 65544322 444556666666666655444331 111111 0000000000 00111122222222 122
Q ss_pred CCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccccccccceeeccCCccCCCCCCCC
Q 002349 344 EGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELSRIGNLDTLDMSNNKISGSIPSPL 423 (933)
Q Consensus 344 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 423 (933)
.......|.++.+|+.+.+.++..+ +...+|.++++|+.+.+. +.++......|.++.+|+.++|..+ ++......|
T Consensus 254 ~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF 330 (394)
T 4gt6_A 254 ARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAF 330 (394)
T ss_dssp EEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred eEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHh
Confidence 2233456777777777777655443 445667777777777775 3455455566777777888777654 554556778
Q ss_pred CCccccccccccCcccccccccccccccccceEEccCCccccccchhhccccccceeeecCCCC
Q 002349 424 GDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYNNL 487 (933)
Q Consensus 424 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 487 (933)
.++.+|+.+.|..+ ++.+-..+|.++.+|+.+++.+|.... ..+....+|+.+.+..|.+
T Consensus 331 ~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 331 AGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred hCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 88888888888644 665666788888888888888775431 3556666777776665543
No 404
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=5.5e-14 Score=155.97 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=19.6
Q ss_pred CCccEEEeeCCccCCCCCCccccC-----CcceEeeecccccc
Q 002349 283 SYTEKLYLHSNKLTGHIPPELGNM-----TKLHYLELNDNQLT 320 (933)
Q Consensus 283 ~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~L~~N~l~ 320 (933)
+.|+.|+|++|.++......+... ++|+.|+|++|.++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~ 114 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD 114 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC
Confidence 455666666666653322222222 45666666666554
No 405
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=1.2e-13 Score=153.24 Aligned_cols=164 Identities=16% Similarity=0.183 Sum_probs=92.4
Q ss_pred CCccEEEccCCcccccCCCCccC-----CCCCceecccccccCCCCCccc-ccccchhhhhhcccCccCCCCccc-----
Q 002349 92 KDLQSIDLRGNRLSGQIPDEIGD-----CSSLKSLDLSFNELYGDIPFSI-SKLKQLEFLILKNNQLIGPIPSTL----- 160 (933)
Q Consensus 92 ~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l----- 160 (933)
+.|++|+|++|.|+......|.. .++|++|||++|.++......+ ..+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45677777777776432222222 2577777777777754333333 345667777777777654333333
Q ss_pred ccCCCCceeeeecCCCCCC----cccccccCCCCcEEeccCccccCc----cCcCCcCCCCCcEEccccccccCcCCCCc
Q 002349 161 SQLPNLKVFGLRGNNLVGT----LSPDMCQLSGLWYFDVRNNSLTGS----IPQNIGNCTSFQVLDLSYNQLSGEIPFNI 232 (933)
Q Consensus 161 ~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 232 (933)
...++|+.|+|++|.++.. ++..+..+++|++|+|++|.|+.. ++..+...++|++|+|++|.++.....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~-- 229 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL-- 229 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH--
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH--
Confidence 2346677777777776532 233335566677777777766532 234455556666666666665421110
Q ss_pred cccccceEeccccccccccCccccccccccEEeccCCcCcCC
Q 002349 233 GFLQIATLSLQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGP 274 (933)
Q Consensus 233 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 274 (933)
.+...+...++|++|+|++|.|++.
T Consensus 230 -----------------~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 230 -----------------ALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp -----------------HHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred -----------------HHHHHHHhCCCCCEEeccCCCCCHH
Confidence 1233344556677777777776644
No 406
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.20 E-value=1.9e-10 Score=129.22 Aligned_cols=329 Identities=9% Similarity=0.097 Sum_probs=179.4
Q ss_pred CCCCCCC-CccEEEccCCcccccCCCCccCCCCCceecccccc---cCCCCCcccccccchhhhhhcccCccCCCCcccc
Q 002349 86 PAVGDLK-DLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNE---LYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLS 161 (933)
Q Consensus 86 ~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 161 (933)
.+|.+.. .|+.+.+..+ ++..-..+|.+|++|+.+.++.|. ++.....+|.++.+|+.+.+..+ ++......|.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 4677774 5999999764 664456789999999999998874 55344567889999999998765 4445556789
Q ss_pred cCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCCcEEccccccccCcCCCCccccccceEe
Q 002349 162 QLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSFQVLDLSYNQLSGEIPFNIGFLQIATLS 241 (933)
Q Consensus 162 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~ 241 (933)
.+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++..-..+|. ..+|+.+.+..+-..
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~---------------- 195 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR---------------- 195 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE----------------
T ss_pred hhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc----------------
Confidence 9999999999754 44355567889999999999765 4423334444 456887776544321
Q ss_pred ccccccccccCccccccccccEEeccCCcCcCCCCCCC-CCCCCccEEEeeCCccCCCCCCccccCCcceEeeecccccc
Q 002349 242 LQGNQLTGKIPSVIGLMQALAVLDLSCNMLSGPIPPIL-GNLSYTEKLYLHSNKLTGHIPPELGNMTKLHYLELNDNQLT 320 (933)
Q Consensus 242 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 320 (933)
.....|....++.......+..... ...+ ........... .+.....+..+.+. +.++
T Consensus 196 --------i~~~af~~c~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ip-~~v~ 254 (394)
T 4gt6_A 196 --------IGTNAFSECFALSTITSDSESYPAI-DNVLYEKSANGDYALI-----------RYPSQREDPAFKIP-NGVA 254 (394)
T ss_dssp --------ECTTTTTTCTTCCEEEECCSSSCBS-SSCEEEECTTSCEEEE-----------ECCTTCCCSEEECC-TTEE
T ss_pred --------cccchhhhccccceecccccccccc-cceeeccccccccccc-----------ccccccccceEEcC-Ccce
Confidence 1112233334444444433332211 1111 00000000000 00111122222221 1222
Q ss_pred ccCCccccccccccccccccccCCCCCCCCcccCCCCCceeccCcccCCCCCcccccccccceecCCcccccCCCccccc
Q 002349 321 GHIPPALGKLTDLFDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNLSLNNIRGPIPVELS 400 (933)
Q Consensus 321 ~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 400 (933)
.....+|..+..|+.+.+.++... .....|.++++|+.+.+. +.++.+...+|.++.+|+.+.|..+ ++.....+|.
T Consensus 255 ~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 331 (394)
T 4gt6_A 255 RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFA 331 (394)
T ss_dssp EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred EcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence 233344455555555555433322 333455555666666554 3344344455666666666666543 4434445666
Q ss_pred cccccceeeccCCccCCCCCCCCCCccccccccccCcccccccccccccccccceEEccCCcc
Q 002349 401 RIGNLDTLDMSNNKISGSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHL 463 (933)
Q Consensus 401 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 463 (933)
++.+|+.+.|..+ ++......|.++.+|+.+++.+|.... ..|....+|+.+.+..|.+
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 6667777776543 554455667777777777777765441 3566667777777766654
No 407
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.05 E-value=1e-10 Score=123.37 Aligned_cols=137 Identities=13% Similarity=0.077 Sum_probs=100.9
Q ss_pred ccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCc--eeeeeeEEecCCccEEEEEec
Q 002349 599 NLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRN--LVSLQGYSLSSSGNLLFYDFM 676 (933)
Q Consensus 599 ~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~~~~~~~~~~~~~lv~e~~ 676 (933)
.+....+.+.|..+.||++...+|+.+++|..... ....+.+|+++++.+++.+ +.+++++...++..++||||+
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i 97 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEV 97 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECC
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEec
Confidence 44443333456669999998777788999987654 2345788999999886544 456888888877889999999
Q ss_pred CCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC---------------------------------------
Q 002349 677 ENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDC--------------------------------------- 717 (933)
Q Consensus 677 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~--------------------------------------- 717 (933)
+|.++. .. . .+ ...++.++++.+..||+..
T Consensus 98 ~G~~l~--~~---~---~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (264)
T 1nd4_A 98 PGQDLL--SS---H---LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLA 166 (264)
T ss_dssp SSEETT--TS---C---CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCC
T ss_pred CCcccC--cC---c---CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCcc
Confidence 998874 21 1 11 2367788888888888631
Q ss_pred ----------------CCCeeeccCCCCceEeCCCCCeEEeecccccc
Q 002349 718 ----------------SPRIIHRDVKSSNILLDKDFEAHLTDFGIAKS 749 (933)
Q Consensus 718 ----------------~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~ 749 (933)
...++|+|++|.||++++++.+.|+|||.+..
T Consensus 167 ~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 167 PAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp HHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred HHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 11299999999999998776677999998753
No 408
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.93 E-value=1.6e-08 Score=112.86 Aligned_cols=83 Identities=4% Similarity=-0.034 Sum_probs=46.4
Q ss_pred ccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCcCCCCC
Q 002349 135 SISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIGNCTSF 214 (933)
Q Consensus 135 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (933)
++....+|+.+.+.. .++......|.++++|+.+.|..+ ++......|.+. +|+.+.+..+ ++.....+|.. .+|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 355566777777754 345444556888888888888643 553444456554 5666665443 33222233333 356
Q ss_pred cEEccccc
Q 002349 215 QVLDLSYN 222 (933)
Q Consensus 215 ~~L~L~~N 222 (933)
+.+.+..+
T Consensus 116 ~~i~lp~~ 123 (379)
T 4h09_A 116 DDFEFPGA 123 (379)
T ss_dssp SEEECCTT
T ss_pred ccccCCCc
Confidence 66665443
No 409
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.90 E-value=5.2e-12 Score=131.45 Aligned_cols=161 Identities=20% Similarity=0.197 Sum_probs=88.6
Q ss_pred CCCCccceEecCCCCcEEEEEcCC---CCcCcccCC-CCCCCCCccEEEccCCcccccCCC-CccCCCCCce--eccccc
Q 002349 54 DYCVWRGITCDNVTFTVIALNLSG---LNLDGEISP-AVGDLKDLQSIDLRGNRLSGQIPD-EIGDCSSLKS--LDLSFN 126 (933)
Q Consensus 54 ~~c~w~gv~C~~~~~~v~~l~l~~---~~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~--L~Ls~n 126 (933)
..|.|.|+.|+....+|+.+...+ ..+.|.+.+ .+..++. .|+..+|.-++.++- .|...+.|+. ++++.|
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N 153 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN 153 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTT
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCC
Confidence 358899999987655665554433 233333332 1111111 222233333332221 2455555555 566666
Q ss_pred ccC---CCCCcccccccchhhhhhcccCccC--CCCcccccCCCCceeeeecCCCCCCcccccccCC--CCcEEeccCcc
Q 002349 127 ELY---GDIPFSISKLKQLEFLILKNNQLIG--PIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLS--GLWYFDVRNNS 199 (933)
Q Consensus 127 ~l~---~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~L~~n~ 199 (933)
... +.++....++++|+.|+|++|+|++ .+|..++.+++|+.|+|++|+|++. ..+..+. +|++|+|++|.
T Consensus 154 ~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 154 RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTST
T ss_pred HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCc
Confidence 432 2222222456677777777777776 4456666777777777777777654 2333333 67777777777
Q ss_pred ccCccCc-------CCcCCCCCcEEc
Q 002349 200 LTGSIPQ-------NIGNCTSFQVLD 218 (933)
Q Consensus 200 l~~~~p~-------~l~~l~~L~~L~ 218 (933)
+.+.+|+ .+..+++|+.||
T Consensus 232 l~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 232 LCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CccccCcchhHHHHHHHHCcccCeEC
Confidence 7665552 245666676665
No 410
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.90 E-value=2.2e-08 Score=111.75 Aligned_cols=103 Identities=6% Similarity=-0.065 Sum_probs=65.2
Q ss_pred CCccCCCCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccCCC
Q 002349 110 DEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQLSG 189 (933)
Q Consensus 110 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 189 (933)
+++....+|+.+.+.. .++.....+|.++.+|+.+.|..+ ++..-...|.++ +|+.+.+..+ +.......|.. .+
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 3677778899988874 355344567999999999999765 554555677776 6877777543 44333334544 57
Q ss_pred CcEEeccCccccCccCcCCcCCCCCcEEcc
Q 002349 190 LWYFDVRNNSLTGSIPQNIGNCTSFQVLDL 219 (933)
Q Consensus 190 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (933)
|+.+.+..+-.. .....|.+. +|+.+.+
T Consensus 115 L~~i~lp~~~~~-i~~~~F~~~-~l~~~~~ 142 (379)
T 4h09_A 115 LDDFEFPGATTE-IGNYIFYNS-SVKRIVI 142 (379)
T ss_dssp CSEEECCTTCCE-ECTTTTTTC-CCCEEEE
T ss_pred cccccCCCcccc-ccccccccc-eeeeeec
Confidence 999988765322 223334443 4555444
No 411
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.89 E-value=3.7e-09 Score=117.01 Aligned_cols=142 Identities=13% Similarity=0.172 Sum_probs=107.1
Q ss_pred cceeeecccceeEEEEEEcCCceEEEEEec--ccC-chhHHHHHHHHHHHhcCC--CCceeeeeeEEecC---CccEEEE
Q 002349 602 EKYIIGYGASSTVYKCVLKNCKPVAIKRLY--SHY-PQCLKEFETELETVGSIK--HRNLVSLQGYSLSS---SGNLLFY 673 (933)
Q Consensus 602 ~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~--~~~-~~~~~~~~~E~~~l~~l~--h~niv~~~~~~~~~---~~~~lv~ 673 (933)
..+.++.|.++.||++...+ ..+++|+.. ... ......+.+|+++++.+. +..+.++++++.+. +..++||
T Consensus 42 ~~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm 120 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM 120 (359)
T ss_dssp EEEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred eEEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence 45679999999999998765 578888775 322 122456788999999987 45578888888766 4479999
Q ss_pred EecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC------------------------------------
Q 002349 674 DFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDC------------------------------------ 717 (933)
Q Consensus 674 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~------------------------------------ 717 (933)
||++|..+.+.. ...++..++..++.+++++|..||+..
T Consensus 121 e~v~G~~l~~~~-----~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (359)
T 3dxp_A 121 EFVSGRVLWDQS-----LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIP 195 (359)
T ss_dssp ECCCCBCCCCTT-----CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCH
T ss_pred EecCCeecCCCc-----cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCCh
Confidence 999997775422 234678889999999999999999620
Q ss_pred -------------------CCCeeeccCCCCceEeCCCCC--eEEeecccccc
Q 002349 718 -------------------SPRIIHRDVKSSNILLDKDFE--AHLTDFGIAKS 749 (933)
Q Consensus 718 -------------------~~~ivH~Dikp~NIll~~~~~--~kl~DfGla~~ 749 (933)
...++|+|+++.||+++.++. +.|+||+.+..
T Consensus 196 ~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 196 AMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 246999999999999997753 68999998864
No 412
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=3.2e-10 Score=124.50 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=34.4
Q ss_pred ccccccccccCccccccccccc---ccccccceEEccCCccccc----cchhhccccccceeeecCCCCc
Q 002349 426 LEHLLKLNLSRNQLTGFIPGEF---GNLRSVMEIDLSHNHLTGV----IPEELSQLQNMFSLRLDYNNLS 488 (933)
Q Consensus 426 l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 488 (933)
+++|+.|+|++|.++...+..+ ..+++|++|+|+.|.|++. ++..+..+++|+.|+|++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4556666666665553332222 2356666666666666553 2333345566666666666654
No 413
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.84 E-value=1.7e-09 Score=116.76 Aligned_cols=184 Identities=18% Similarity=0.165 Sum_probs=122.2
Q ss_pred ceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCC-CCc--eeeeeeEEecCC---ccEEEEEec
Q 002349 603 KYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIK-HRN--LVSLQGYSLSSS---GNLLFYDFM 676 (933)
Q Consensus 603 ~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~n--iv~~~~~~~~~~---~~~lv~e~~ 676 (933)
.+.++.|.+..||++. +.+++|+.... .....+.+|+++++.+. +.. +.+++.+..... ..|+|||++
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i 98 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI 98 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence 3568999999999863 56899986433 34567899999998873 332 334444433333 348899999
Q ss_pred CCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC----------------------------------------
Q 002349 677 ENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHD---------------------------------------- 716 (933)
Q Consensus 677 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---------------------------------------- 716 (933)
+|.++.+... ..++.+++..++.++++.+..||+.
T Consensus 99 ~G~~l~~~~~-----~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (304)
T 3sg8_A 99 KGVPLTPLLL-----NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKV 173 (304)
T ss_dssp CCEECCHHHH-----HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred CCeECCcccc-----ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHH
Confidence 9988765431 2467788888888999888888851
Q ss_pred ---------------CCCCeeeccCCCCceEeCC--CCCeEEeecccccccccCCCceeeeecccccc---cCcccccc-
Q 002349 717 ---------------CSPRIIHRDVKSSNILLDK--DFEAHLTDFGIAKSLCVSKSYTSTYIMGTIGY---IDPEYART- 775 (933)
Q Consensus 717 ---------------~~~~ivH~Dikp~NIll~~--~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y---~aPE~~~~- 775 (933)
....++|+|++|.||++++ ...+.++||+.+..-....... ....+ ..|+....
T Consensus 174 ~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~-----~~~~~~~~~~~~~~~~~ 248 (304)
T 3sg8_A 174 DDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFI-----SLMEDDEEYGMEFVSKI 248 (304)
T ss_dssp HHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHH-----TTCCTTTSCCHHHHHHH
T ss_pred HHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHH-----HHHhhccccCHHHHHHH
Confidence 0135899999999999998 4567899999886532110000 00011 12221110
Q ss_pred ----CC---------CCcchhhHHHHHHHHHHHhCCCCCC
Q 002349 776 ----SR---------LTEKSDVYSFGIVLLELLTGRKAVD 802 (933)
Q Consensus 776 ----~~---------~~~~~DvwSlGv~l~elltg~~p~~ 802 (933)
+. .....+.|++|.++|.+.+|..+|-
T Consensus 249 l~~Y~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~g~~~~~ 288 (304)
T 3sg8_A 249 LNHYKHKDIPTVLEKYRMKEKYWSFEKIIYGKEYGYMDWY 288 (304)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 00 1123689999999999999987763
No 414
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=4.3e-10 Score=123.49 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=53.2
Q ss_pred CCccEEEccCCcccc-c-------CCCCccCCCCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccC
Q 002349 92 KDLQSIDLRGNRLSG-Q-------IPDEIGDCSSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQL 163 (933)
Q Consensus 92 ~~L~~L~Ls~n~l~~-~-------~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 163 (933)
..++.|.+....+.| . +..++.++++|+.|.+..+.... ..++... .+.+...+..+
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~--------------~~is~~~-~~~L~~ll~~~ 171 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEE--------------QEISWIE-QVDLSPVLDAM 171 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTT--------------CCGGGCB-CCBCHHHHHTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhh--------------ccccccc-ccCHHHHHhcC
Confidence 345667776544442 1 23345567778888776543210 0000000 01233344555
Q ss_pred CCCceeeeecCCCCCCcccccccCCCCcEEeccCccccCccCcCCc--CCCCCcEEccc
Q 002349 164 PNLKVFGLRGNNLVGTLSPDMCQLSGLWYFDVRNNSLTGSIPQNIG--NCTSFQVLDLS 220 (933)
Q Consensus 164 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~ 220 (933)
++|+.|+|++|.-. .++. + .+++|++|+|..|.+.......+. .+++|+.|+|+
T Consensus 172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 66666666665211 1222 2 256666666666665433222332 56666666664
No 415
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.55 E-value=4e-07 Score=98.73 Aligned_cols=136 Identities=17% Similarity=0.199 Sum_probs=102.2
Q ss_pred ccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCC----CceeeeeeEEecCCccEEEEE
Q 002349 599 NLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKH----RNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 599 ~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h----~niv~~~~~~~~~~~~~lv~e 674 (933)
.+...+.++.|....||++ ++.+++|+.... .....+.+|+++++.+.+ ..+.+++++ +..++|||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme 107 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMK 107 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEe
Confidence 5667788999999999998 567899976432 224568999999988865 123455544 56789999
Q ss_pred ecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-------------------------------------
Q 002349 675 FMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDC------------------------------------- 717 (933)
Q Consensus 675 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~------------------------------------- 717 (933)
|++|.++.+... ..++..++..++.++++.+..||+..
T Consensus 108 ~i~G~~l~~~~~-----~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (320)
T 3r70_A 108 YIKGERITYEQY-----HKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLT 182 (320)
T ss_dssp CCCCBCCCHHHH-----TTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ecCCcccccccc-----ccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhccccc
Confidence 999988864331 23567777888888888888888431
Q ss_pred -----------------------CCCeeeccCCCCceEeCCCCCeEEeecccccc
Q 002349 718 -----------------------SPRIIHRDVKSSNILLDKDFEAHLTDFGIAKS 749 (933)
Q Consensus 718 -----------------------~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~ 749 (933)
...++|+|++|.||+++.+..+.|+||+.+..
T Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~ 237 (320)
T 3r70_A 183 DEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNV 237 (320)
T ss_dssp HHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEE
T ss_pred ccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCccccc
Confidence 12359999999999999966679999998865
No 416
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.48 E-value=3.2e-09 Score=105.23 Aligned_cols=95 Identities=12% Similarity=0.149 Sum_probs=52.8
Q ss_pred ccCCCCCCCCCccEEEccCC-cccc----cCCCCccCCCCCceecccccccCCCC----CcccccccchhhhhhcccCcc
Q 002349 83 EISPAVGDLKDLQSIDLRGN-RLSG----QIPDEIGDCSSLKSLDLSFNELYGDI----PFSISKLKQLEFLILKNNQLI 153 (933)
Q Consensus 83 ~~~~~l~~l~~L~~L~Ls~n-~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~ 153 (933)
.+...+...+.|++|+|++| .|.. .+.+.+...++|++|+|++|.|.... ...+...++|++|+|++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 44455667788888888888 7763 23445666778888888888876322 222233344555555555544
Q ss_pred CC----CCcccccCCCCceeee--ecCCCC
Q 002349 154 GP----IPSTLSQLPNLKVFGL--RGNNLV 177 (933)
Q Consensus 154 ~~----~p~~l~~l~~L~~L~L--~~N~l~ 177 (933)
+. +...+...++|++|+| ++|.+.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 32 2233334444444444 444443
No 417
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.46 E-value=7.2e-07 Score=94.77 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=61.9
Q ss_pred CcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCC---ceeeeeeEEecCCccEEEEEecC
Q 002349 601 SEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHR---NLVSLQGYSLSSSGNLLFYDFME 677 (933)
Q Consensus 601 ~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~~~~~~~~~~~~~lv~e~~~ 677 (933)
...+.||.|.++.||++...+|+.++||+...........|.+|++.++.+++. .+.+++++. ..++||||++
T Consensus 18 ~~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~ 93 (288)
T 3d1u_A 18 AAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVD 93 (288)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCC
T ss_pred cceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEecc
Confidence 345689999999999999888999999997544333456789999999999765 577777763 4799999999
Q ss_pred CCCH
Q 002349 678 NGSL 681 (933)
Q Consensus 678 ~gsL 681 (933)
++++
T Consensus 94 g~~~ 97 (288)
T 3d1u_A 94 ERPP 97 (288)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9874
No 418
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.45 E-value=1.6e-08 Score=105.19 Aligned_cols=80 Identities=25% Similarity=0.333 Sum_probs=53.0
Q ss_pred ccccccceeeccCCccCC--CCCCCCCCccccccccccCccccccccccccccc--ccceEEccCCccccccc-------
Q 002349 400 SRIGNLDTLDMSNNKISG--SIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLR--SVMEIDLSHNHLTGVIP------- 468 (933)
Q Consensus 400 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p------- 468 (933)
.++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456677777777777775 3345556677777777777777754 2344444 78888888888876555
Q ss_pred hhhccccccceee
Q 002349 469 EELSQLQNMFSLR 481 (933)
Q Consensus 469 ~~~~~l~~L~~L~ 481 (933)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2356777777664
No 419
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.36 E-value=2.5e-06 Score=91.64 Aligned_cols=136 Identities=19% Similarity=0.138 Sum_probs=96.6
Q ss_pred ceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCC---ceeeeeeEEe-cCCccEEEEEecCC
Q 002349 603 KYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHR---NLVSLQGYSL-SSSGNLLFYDFMEN 678 (933)
Q Consensus 603 ~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~~~~~~~-~~~~~~lv~e~~~~ 678 (933)
...++.|....||+. ++.+++|+-.. ......+.+|+++++.+.+. .+.+++.+.. ..+..++||||++|
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G 97 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG 97 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence 356889999999988 56788988532 23456789999999999653 3556666664 44567899999999
Q ss_pred CCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC------------------------------------------
Q 002349 679 GSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHD------------------------------------------ 716 (933)
Q Consensus 679 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~------------------------------------------ 716 (933)
..+.+... ..++..+...++.++++.|..||+.
T Consensus 98 ~~l~~~~~-----~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l 172 (306)
T 3tdw_A 98 QILGEDGM-----AVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYL 172 (306)
T ss_dssp EECHHHHH-----TTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred eECchhhh-----hhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 88876321 1234555556666666666666532
Q ss_pred ---------------CCCCeeeccCCCCceEeCC---CCCe-EEeecccccc
Q 002349 717 ---------------CSPRIIHRDVKSSNILLDK---DFEA-HLTDFGIAKS 749 (933)
Q Consensus 717 ---------------~~~~ivH~Dikp~NIll~~---~~~~-kl~DfGla~~ 749 (933)
....++|+|+++.||+++. ++.+ .|+||+.+..
T Consensus 173 ~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 173 TLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 1235799999999999997 4554 8999998754
No 420
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.29 E-value=2.8e-08 Score=98.34 Aligned_cols=119 Identities=12% Similarity=0.160 Sum_probs=72.6
Q ss_pred cCCCCccCCCCCceeccccc-ccCCC----CCcccccccchhhhhhcccCccCC----CCcccccCCCCceeeeecCCCC
Q 002349 107 QIPDEIGDCSSLKSLDLSFN-ELYGD----IPFSISKLKQLEFLILKNNQLIGP----IPSTLSQLPNLKVFGLRGNNLV 177 (933)
Q Consensus 107 ~~p~~l~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 177 (933)
.+...+...++|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.|.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34456777889999999998 87632 233344556777777777777542 2334445567777777777776
Q ss_pred CC----cccccccCCCCcEEec--cCccccCc----cCcCCcCCCCCcEEcccccccc
Q 002349 178 GT----LSPDMCQLSGLWYFDV--RNNSLTGS----IPQNIGNCTSFQVLDLSYNQLS 225 (933)
Q Consensus 178 ~~----~~~~~~~l~~L~~L~L--~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 225 (933)
.. +...+...++|++|+| ++|.++.. +...+...++|++|+|++|.+.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 42 2344455566667776 66666532 2233444456666666666553
No 421
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.16 E-value=5.9e-06 Score=87.08 Aligned_cols=135 Identities=17% Similarity=0.162 Sum_probs=96.1
Q ss_pred eeecccce-eEEEEEEc-CCceEEEEEecccCchhHHHHHHHHHHHhcCC-CCceeeeeeEEecCCccEEEEEecCCCCH
Q 002349 605 IIGYGASS-TVYKCVLK-NCKPVAIKRLYSHYPQCLKEFETELETVGSIK-HRNLVSLQGYSLSSSGNLLFYDFMENGSL 681 (933)
Q Consensus 605 ~lG~G~~g-~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~~gsL 681 (933)
.+..|..| .||+.... ++..+++|+-... ....+.+|+..++.+. +--+.++++++.+.+..++|||+++|.++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~ 107 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA 107 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence 45667666 68988765 4567899986433 3456888999998874 33366788888888899999999999887
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC--------------------------------------------
Q 002349 682 WDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDC-------------------------------------------- 717 (933)
Q Consensus 682 ~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-------------------------------------------- 717 (933)
.+.... .......+..+++..+..||...
T Consensus 108 ~~~~~~-------~~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (272)
T 4gkh_A 108 FQVLEE-------YPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVW 180 (272)
T ss_dssp HHHHHH-------CGGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHH
T ss_pred cccccC-------CHHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHH
Confidence 765421 11233445566666666666310
Q ss_pred -----------CCCeeeccCCCCceEeCCCCCeEEeecccccc
Q 002349 718 -----------SPRIIHRDVKSSNILLDKDFEAHLTDFGIAKS 749 (933)
Q Consensus 718 -----------~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~ 749 (933)
...++|+|+.+.||++++++.+-|+||+.+..
T Consensus 181 ~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~ 223 (272)
T 4gkh_A 181 KEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI 223 (272)
T ss_dssp HHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred HHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence 12378999999999999877777999998753
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.14 E-value=6.5e-06 Score=90.58 Aligned_cols=77 Identities=9% Similarity=0.010 Sum_probs=57.2
Q ss_pred cCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCc--eeeeeeEEecC-CccEEEEEec
Q 002349 600 LSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRN--LVSLQGYSLSS-SGNLLFYDFM 676 (933)
Q Consensus 600 ~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~~~~~~~~~-~~~~lv~e~~ 676 (933)
....+.++.|....+|+... +++.+++|+.... ..+.+|+.+++.+.... +.++++++... +..++||||+
T Consensus 43 ~~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l 116 (362)
T 3ovc_A 43 VSDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRA 116 (362)
T ss_dssp CEEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECC
T ss_pred CceEEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEec
Confidence 34456789999999999875 4678999987432 35888999998886433 45667766654 5679999999
Q ss_pred CCCCHH
Q 002349 677 ENGSLW 682 (933)
Q Consensus 677 ~~gsL~ 682 (933)
+|.++.
T Consensus 117 ~G~~l~ 122 (362)
T 3ovc_A 117 QGVTLQ 122 (362)
T ss_dssp CSEETT
T ss_pred CCCCcc
Confidence 986553
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.08 E-value=6e-06 Score=90.96 Aligned_cols=81 Identities=9% Similarity=0.023 Sum_probs=56.0
Q ss_pred ceee-ecccceeEEEEEEc-------CCceEEEEEecccC---chhHHHHHHHHHHHhcCC-C--CceeeeeeEEecC--
Q 002349 603 KYII-GYGASSTVYKCVLK-------NCKPVAIKRLYSHY---PQCLKEFETELETVGSIK-H--RNLVSLQGYSLSS-- 666 (933)
Q Consensus 603 ~~~l-G~G~~g~Vy~~~~~-------~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~-h--~niv~~~~~~~~~-- 666 (933)
.+.| +.|....+|+.... +++.+++|+..... ......+.+|+++++.+. + -.+.++++++.+.
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3567 88999999998764 25678888765432 101245778888888874 2 3466778777655
Q ss_pred -CccEEEEEecCCCCHHH
Q 002349 667 -SGNLLFYDFMENGSLWD 683 (933)
Q Consensus 667 -~~~~lv~e~~~~gsL~~ 683 (933)
+..++||||++|..+.+
T Consensus 105 ~g~~~~v~e~l~G~~l~~ 122 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPPD 122 (357)
T ss_dssp TSSCEEEEECCCCBCCCB
T ss_pred cCCceEEEEecCCCChhh
Confidence 35689999999876543
No 424
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.80 E-value=2.9e-05 Score=84.85 Aligned_cols=140 Identities=19% Similarity=0.200 Sum_probs=79.6
Q ss_pred eeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCC-----CCceeeee-e--EEecCCccEEEEEe
Q 002349 604 YIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIK-----HRNLVSLQ-G--YSLSSSGNLLFYDF 675 (933)
Q Consensus 604 ~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~~~-~--~~~~~~~~~lv~e~ 675 (933)
..|+.|..+.||++...++ .+++|+.... ..++..|+++++.+. .|.++... | +....+..+++|||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~ 112 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW 112 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence 4566677899999987665 5899988652 233445555555542 34333311 1 12235667899999
Q ss_pred cCCCCHH--------------HHhcCC--CC--C-------CCCCHHHH-------------------------------
Q 002349 676 MENGSLW--------------DILHGP--TK--K-------KKLDWDTR------------------------------- 699 (933)
Q Consensus 676 ~~~gsL~--------------~~l~~~--~~--~-------~~l~~~~~------------------------------- 699 (933)
++|..+. ..+|.. .. . ..-.|...
T Consensus 113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (346)
T 2q83_A 113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI 192 (346)
T ss_dssp CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 9986542 111210 00 0 01122211
Q ss_pred HHHHHHHHHHHHHhhc----------CCCCCeeeccCCCCceEeCCCCCeEEeeccccc
Q 002349 700 LKIALGAAQGLAYLHH----------DCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAK 748 (933)
Q Consensus 700 ~~i~~~i~~~l~~LH~----------~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~ 748 (933)
..+...+..++++|++ .....++|+|+++.||+++.++.+.|+||+.+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 1111223445666653 014589999999999999888899999999774
No 425
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.76 E-value=6.3e-05 Score=84.05 Aligned_cols=75 Identities=9% Similarity=-0.025 Sum_probs=49.8
Q ss_pred ceeeecccceeEEEEEEc-CCceEEEEEecccCc-------hhHHHHHHHHHHHhcCCC--C-ceeeeeeEEecCCccEE
Q 002349 603 KYIIGYGASSTVYKCVLK-NCKPVAIKRLYSHYP-------QCLKEFETELETVGSIKH--R-NLVSLQGYSLSSSGNLL 671 (933)
Q Consensus 603 ~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~E~~~l~~l~h--~-niv~~~~~~~~~~~~~l 671 (933)
.+.||.|.++.||++... +++.++||....... ....++..|+++++.+.. + .+.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 457999999999999754 467899997653211 123456788888887732 3 34455544 3456789
Q ss_pred EEEecCCC
Q 002349 672 FYDFMENG 679 (933)
Q Consensus 672 v~e~~~~g 679 (933)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999764
No 426
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.71 E-value=6.1e-06 Score=79.39 Aligned_cols=84 Identities=15% Similarity=0.075 Sum_probs=49.0
Q ss_pred CCccEEEccCCcccccCCCCccCCCCCceecccccc-cCCCCCcccccc----cchhhhhhcccC-ccCCCCcccccCCC
Q 002349 92 KDLQSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNE-LYGDIPFSISKL----KQLEFLILKNNQ-LIGPIPSTLSQLPN 165 (933)
Q Consensus 92 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~ 165 (933)
..|++|||+++.|+..--..+.++++|++|+|++|. ++...-..++.+ ++|++|+|++|. +++.--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467788888877765433456777888888888774 553322233332 246666666653 54433334555566
Q ss_pred CceeeeecCC
Q 002349 166 LKVFGLRGNN 175 (933)
Q Consensus 166 L~~L~L~~N~ 175 (933)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666665553
No 427
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.70 E-value=4e-06 Score=80.62 Aligned_cols=85 Identities=12% Similarity=0.035 Sum_probs=41.6
Q ss_pred CCCceecccccccCCCCCcccccccchhhhhhcccCccCCCCcccccCCCCceeeeecCCCCCCcccccccC----CCCc
Q 002349 116 SSLKSLDLSFNELYGDIPFSISKLKQLEFLILKNNQLIGPIPSTLSQLPNLKVFGLRGNNLVGTLSPDMCQL----SGLW 191 (933)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l----~~L~ 191 (933)
.+|++||||++.++...-..+.++++|++|+|++|. ++++.--..++.+ ++|+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~-----------------------~ItD~gL~~L~~~~~~~~~L~ 117 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH-----------------------YIEDGCLERLSQLENLQKSML 117 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT-----------------------TCCHHHHHHHHTCHHHHHHCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC-----------------------ccCHHHHHHHHhcccccCCCC
Confidence 457777777776654333334444555555555543 1332222223332 2455
Q ss_pred EEeccCcc-ccCccCcCCcCCCCCcEEcccccc
Q 002349 192 YFDVRNNS-LTGSIPQNIGNCTSFQVLDLSYNQ 223 (933)
Q Consensus 192 ~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~N~ 223 (933)
+|+|++|. ++..--..+.++++|+.|+|+++.
T Consensus 118 ~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 118 EMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp EEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred EEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 55555542 443333345556666666666553
No 428
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.63 E-value=0.0001 Score=78.23 Aligned_cols=79 Identities=14% Similarity=0.205 Sum_probs=58.4
Q ss_pred ccCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCC---ceeeeeeEEecCCccEEEEEe
Q 002349 599 NLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHR---NLVSLQGYSLSSSGNLLFYDF 675 (933)
Q Consensus 599 ~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~~~~~~~~~~~~~lv~e~ 675 (933)
+......+|.|..+.||+....+|+.|+||+-..........|.+|++.|+.+.-. -+.+++++ +..++||||
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~----~~~~lv~e~ 91 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW----DDRTLAMEW 91 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE----ETTEEEEEC
T ss_pred CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec----cCceEEEEe
Confidence 45556789999999999999999999999987655444455688999998887421 24445544 235789999
Q ss_pred cCCCCH
Q 002349 676 MENGSL 681 (933)
Q Consensus 676 ~~~gsL 681 (933)
++++..
T Consensus 92 l~~~~~ 97 (288)
T 3f7w_A 92 VDERPP 97 (288)
T ss_dssp CCCCCC
T ss_pred ecccCC
Confidence 987643
No 429
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.62 E-value=7.7e-05 Score=83.96 Aligned_cols=78 Identities=14% Similarity=0.188 Sum_probs=49.2
Q ss_pred CCCeeeccCCCCceEeCCCCCeEEeecccccccccCCCceeeeecc--cccccCccccccC---CCCcchhhHHHHHHHH
Q 002349 718 SPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSYTSTYIMG--TIGYIDPEYARTS---RLTEKSDVYSFGIVLL 792 (933)
Q Consensus 718 ~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~g--t~~y~aPE~~~~~---~~~~~~DvwSlGv~l~ 792 (933)
...++|+|++|.||+++.++ ++++||+.+..-... ..-....+ ...|.+|+..... ......++......+|
T Consensus 231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~--~Dla~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (420)
T 2pyw_A 231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMG--FDIGAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTW 307 (420)
T ss_dssp CCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHH--HHHHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchH--HHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHH
Confidence 45899999999999999876 999999988653211 11011111 1346666655421 1123456668888888
Q ss_pred HHHhCC
Q 002349 793 ELLTGR 798 (933)
Q Consensus 793 elltg~ 798 (933)
+.++++
T Consensus 308 ~~y~~~ 313 (420)
T 2pyw_A 308 NLFNKR 313 (420)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 430
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.61 E-value=0.00025 Score=75.74 Aligned_cols=140 Identities=15% Similarity=0.135 Sum_probs=92.7
Q ss_pred CcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCC---CCceeeeeeEEecCCccEEEEEecC
Q 002349 601 SEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIK---HRNLVSLQGYSLSSSGNLLFYDFME 677 (933)
Q Consensus 601 ~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~~~~~~~~~~~~~lv~e~~~ 677 (933)
...+.|+.|.+..+|+.... ++.++||+.... ....+.+|++.|+.+. ...+.+++++....+..++||||++
T Consensus 39 ~~~~~l~gG~~n~~y~v~~~-~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~ 114 (312)
T 3jr1_A 39 KHKEKLYSGEMNEIWLINDE-VQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALN 114 (312)
T ss_dssp CEEEEECCSSSSEEEEEESS-SCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCC
T ss_pred eeeEEeCCccceeeeEEEEC-CCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEecc
Confidence 34467999999999998864 567889987543 3567889999888883 3568888888887888999999999
Q ss_pred CCCHHH-----------HhcCCCC-C------------------CCCCHHHHH---HHH----------------HHHHH
Q 002349 678 NGSLWD-----------ILHGPTK-K------------------KKLDWDTRL---KIA----------------LGAAQ 708 (933)
Q Consensus 678 ~gsL~~-----------~l~~~~~-~------------------~~l~~~~~~---~i~----------------~~i~~ 708 (933)
+..+.. .+|.... . -.-+|.+.. ++. ..++.
T Consensus 115 G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~ 194 (312)
T 3jr1_A 115 KSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQ 194 (312)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 876421 2232111 0 012454322 111 11111
Q ss_pred H-HHHhhc-CCCCCeeeccCCCCceEeCCCCCeEEeecc
Q 002349 709 G-LAYLHH-DCSPRIIHRDVKSSNILLDKDFEAHLTDFG 745 (933)
Q Consensus 709 ~-l~~LH~-~~~~~ivH~Dikp~NIll~~~~~~kl~DfG 745 (933)
. ...|.. ...+.++|+|+.+.||+++.++ +.|.|++
T Consensus 195 ~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 195 IVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 1 223421 1246799999999999999887 8899974
No 431
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.22 E-value=1.4e-05 Score=78.37 Aligned_cols=70 Identities=17% Similarity=0.221 Sum_probs=37.8
Q ss_pred cCCCCCCCCCccEEEccCC-cccc----cCCCCccCCCCCceecccccccCCCCC----cccccccchhhhhhcccCcc
Q 002349 84 ISPAVGDLKDLQSIDLRGN-RLSG----QIPDEIGDCSSLKSLDLSFNELYGDIP----FSISKLKQLEFLILKNNQLI 153 (933)
Q Consensus 84 ~~~~l~~l~~L~~L~Ls~n-~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~ 153 (933)
+...+.+-+.|++|+|++| +|.. .+-+.+..-+.|+.|+|++|.|....- ..+..-+.|++|+|++|.|.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3344455667777888774 6642 233445556677777777777753222 22223344555555555544
No 432
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.18 E-value=0.0025 Score=68.53 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=87.6
Q ss_pred cCHHHHHHHhhccCcc-----eeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCc--eeeee
Q 002349 588 HVYEDIMRMTENLSEK-----YIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRN--LVSLQ 660 (933)
Q Consensus 588 ~~~~~~~~~~~~~~~~-----~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~~~ 660 (933)
.+.+++....++|... +.|+.|....+|+....++ .+++|...... ....+..|+++++.+.... +.+++
T Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~--~~~~l~~e~~~l~~L~~~g~~vP~~~ 83 (322)
T 2ppq_A 7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLPL 83 (322)
T ss_dssp CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCC--CHHHHHHHHHHHHHHHHCCCCCCccc
Confidence 3456666666667652 3567788899999987665 68899886531 1234566777777663222 23333
Q ss_pred eE------EecCCccEEEEEecCCCCHHH--------------HhcCC----CCC--CCC---CHHHHHH----------
Q 002349 661 GY------SLSSSGNLLFYDFMENGSLWD--------------ILHGP----TKK--KKL---DWDTRLK---------- 701 (933)
Q Consensus 661 ~~------~~~~~~~~lv~e~~~~gsL~~--------------~l~~~----~~~--~~l---~~~~~~~---------- 701 (933)
.. ....+..+++|+|++|..+.. .+|.. ... ... .|.....
T Consensus 84 ~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 163 (322)
T 2ppq_A 84 PRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVE 163 (322)
T ss_dssp CBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTS
T ss_pred CCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhh
Confidence 21 112345689999999865321 11210 000 001 1222110
Q ss_pred --HHHHHHHHHHHhhcC----CCCCeeeccCCCCceEeCCCCCeEEeeccccc
Q 002349 702 --IALGAAQGLAYLHHD----CSPRIIHRDVKSSNILLDKDFEAHLTDFGIAK 748 (933)
Q Consensus 702 --i~~~i~~~l~~LH~~----~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~ 748 (933)
+...+...++++++. ...+++|+|+++.||+++++..+.++||+.+.
T Consensus 164 ~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 164 KGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp TTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 001133444555421 13479999999999999987666899999775
No 433
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=97.15 E-value=0.0051 Score=66.32 Aligned_cols=158 Identities=11% Similarity=0.087 Sum_probs=90.0
Q ss_pred cCHHHHHHHhhccCc-----ceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCC--ceeeee
Q 002349 588 HVYEDIMRMTENLSE-----KYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHR--NLVSLQ 660 (933)
Q Consensus 588 ~~~~~~~~~~~~~~~-----~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~--niv~~~ 660 (933)
.+.+.+..+.+.|.. ...++ |....||++...+|+.+++|...... .....+..|..+++.+... .+++++
T Consensus 11 l~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~ 88 (328)
T 1zyl_A 11 LHPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPV 88 (328)
T ss_dssp CCHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCC
T ss_pred CCHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeeccee
Confidence 344556666555532 24577 88889999887777789999986432 1245667788888777422 234444
Q ss_pred eE-----EecCCccEEEEEecCCCCHH-----HH---------hcC----CC--CCCCCCHHHH----------------
Q 002349 661 GY-----SLSSSGNLLFYDFMENGSLW-----DI---------LHG----PT--KKKKLDWDTR---------------- 699 (933)
Q Consensus 661 ~~-----~~~~~~~~lv~e~~~~gsL~-----~~---------l~~----~~--~~~~l~~~~~---------------- 699 (933)
.. ....+..+++|||++|..+. .. +|. .. .....++...
T Consensus 89 ~~~g~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (328)
T 1zyl_A 89 AFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPS 168 (328)
T ss_dssp CBTTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCT
T ss_pred ecCCcEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCH
Confidence 43 11234557899999875432 00 111 00 0112222211
Q ss_pred ------HHHHHHHHHHHHHhhc-CCCCCeeeccCCCCceEeCCCCCeEEeecccccc
Q 002349 700 ------LKIALGAAQGLAYLHH-DCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKS 749 (933)
Q Consensus 700 ------~~i~~~i~~~l~~LH~-~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~ 749 (933)
...+..++..++..-. .....++|+|+++.||+++ + .+.++||+.+..
T Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 169 GLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp TTHHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 1111222222222211 1134689999999999999 4 899999997753
No 434
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.12 E-value=0.0013 Score=70.05 Aligned_cols=74 Identities=4% Similarity=0.035 Sum_probs=46.0
Q ss_pred cCcceeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCce-eeeeeEEecCCccEEEEEec-C
Q 002349 600 LSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNL-VSLQGYSLSSSGNLLFYDFM-E 677 (933)
Q Consensus 600 ~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~~~~~~~~~~~~~lv~e~~-~ 677 (933)
+...+.|+.|....+|++ +.+++|+....... .....+|+.+++.+....+ .+++++ ..+.-++++||+ +
T Consensus 20 ~~~i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~-~~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i~~ 91 (301)
T 3dxq_A 20 YTGPLERLGGLTNLVFRA-----GDLCLRIPGKGTEE-YINRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYIAG 91 (301)
T ss_dssp CCSCEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECCTT
T ss_pred ccceeEcCCcccccccee-----eeEEEECCCCCccc-eeCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeecCC
Confidence 333678999999999998 56888887653221 1123567777777643223 345443 344457899999 6
Q ss_pred CCCH
Q 002349 678 NGSL 681 (933)
Q Consensus 678 ~gsL 681 (933)
|.++
T Consensus 92 g~~l 95 (301)
T 3dxq_A 92 AQTM 95 (301)
T ss_dssp CEEC
T ss_pred CccC
Confidence 5444
No 435
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.00 E-value=0.00061 Score=62.37 Aligned_cols=53 Identities=28% Similarity=0.369 Sum_probs=31.9
Q ss_pred cccccCcccc-cccccccccccccceEEccCCccccccchhhccccccceeeecCC
Q 002349 431 KLNLSRNQLT-GFIPGEFGNLRSVMEIDLSHNHLTGVIPEELSQLQNMFSLRLDYN 485 (933)
Q Consensus 431 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 485 (933)
.++.+++.|+ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4555555554 23343321 35677777777777666666777777776655543
No 436
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=96.87 E-value=0.0038 Score=67.53 Aligned_cols=141 Identities=13% Similarity=0.092 Sum_probs=71.5
Q ss_pred eeeeccccee-EEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCC--CceeeeeeEEecCCccEEEEEecCCCC
Q 002349 604 YIIGYGASST-VYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKH--RNLVSLQGYSLSSSGNLLFYDFMENGS 680 (933)
Q Consensus 604 ~~lG~G~~g~-Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~~~~~~~~~~~~~lv~e~~~~gs 680 (933)
+.|+.|+... +|+....+++.+++|....... ..+..|+++++.+.. -.+.+++.+.... -+++||++.+..
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~---~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~--g~ll~e~l~~~~ 98 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEEG---GDTQPFVDLAQYLRNLDISAPEIYAEEHAR--GLLLIEDLGDAL 98 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTTT---CCSHHHHHHHHHHHHTTCBCCCEEEEETTT--TEEEECCCCSCB
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCCC---ccccHHHHHHHHHHhCCCCCCceeeecCCC--CEEEEeeCCCcc
Confidence 3466665554 6677654466777776543221 233456666666532 2345566653322 378999997766
Q ss_pred HHHHhc---------------------CCCC--CCCCCHHHHH-------H-------------HHHHHHHHHHHhh---
Q 002349 681 LWDILH---------------------GPTK--KKKLDWDTRL-------K-------------IALGAAQGLAYLH--- 714 (933)
Q Consensus 681 L~~~l~---------------------~~~~--~~~l~~~~~~-------~-------------i~~~i~~~l~~LH--- 714 (933)
+.+.+. .... ...++..... . ....+...++.+.
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~ 178 (333)
T 3csv_A 99 FTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQ 178 (333)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 654332 1100 0112221110 0 0001111222221
Q ss_pred cCCCCCeeeccCCCCceEeCCC----CCeEEeecccccc
Q 002349 715 HDCSPRIIHRDVKSSNILLDKD----FEAHLTDFGIAKS 749 (933)
Q Consensus 715 ~~~~~~ivH~Dikp~NIll~~~----~~~kl~DfGla~~ 749 (933)
......++|||+.+.||+++.+ +.+.|+||+.+..
T Consensus 179 ~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 179 LEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp CCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred ccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 1114579999999999999875 6789999998864
No 437
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.76 E-value=7.6e-05 Score=73.15 Aligned_cols=114 Identities=17% Similarity=0.208 Sum_probs=62.5
Q ss_pred CCccCCCCCceeccccc-ccCCC----CCcccccccchhhhhhcccCccCC----CCcccccCCCCceeeeecCCCCCCc
Q 002349 110 DEIGDCSSLKSLDLSFN-ELYGD----IPFSISKLKQLEFLILKNNQLIGP----IPSTLSQLPNLKVFGLRGNNLVGTL 180 (933)
Q Consensus 110 ~~l~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~ 180 (933)
..+.+-+.|++|+|++| .|... +-..+..-+.|++|+|++|++... +...+...+.|++|+|++|.|....
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34455678889999885 66522 223344456677777777777642 2333445566777777777776322
Q ss_pred ----ccccccCCCCcEEeccCc---cccC----ccCcCCcCCCCCcEEcccccc
Q 002349 181 ----SPDMCQLSGLWYFDVRNN---SLTG----SIPQNIGNCTSFQVLDLSYNQ 223 (933)
Q Consensus 181 ----~~~~~~l~~L~~L~L~~n---~l~~----~~p~~l~~l~~L~~L~L~~N~ 223 (933)
-+.+..-+.|++|+|++| .+.. .+.+.+..-+.|+.|+++.|.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 223333455666666544 2221 122334444555555555444
No 438
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.68 E-value=0.0028 Score=71.06 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=49.5
Q ss_pred ceeeecccceeEEEEEEcC--------CceEEEEEecccCchhHHHHHHHHHHHhcCCCCce-eeeeeEEecCCccEEEE
Q 002349 603 KYIIGYGASSTVYKCVLKN--------CKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNL-VSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 603 ~~~lG~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~~~~~~~~~~~~~lv~ 673 (933)
.+.|+.|....||++...+ ++.+++|+..... ....+.+|+.+++.+...++ .++++.+.+ .+||
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~--~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~ 151 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE--TESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLE 151 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC--CHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEE
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCC--cHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEE
Confidence 3568889999999998753 4678999874421 11455679998888853333 566665532 3899
Q ss_pred EecCCCCH
Q 002349 674 DFMENGSL 681 (933)
Q Consensus 674 e~~~~gsL 681 (933)
||++|.++
T Consensus 152 e~l~G~~l 159 (429)
T 1nw1_A 152 EYIPSRPL 159 (429)
T ss_dssp CCCCEEEC
T ss_pred EEeCCccc
Confidence 99986443
No 439
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.58 E-value=0.013 Score=66.06 Aligned_cols=73 Identities=15% Similarity=0.101 Sum_probs=47.6
Q ss_pred eeeecccceeEEEEEEcC-CceEEEEEecccCchhHHHHHHHHHHHhcCCCCce-eeeeeEEecCCccEEEEEecCCCCH
Q 002349 604 YIIGYGASSTVYKCVLKN-CKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNL-VSLQGYSLSSSGNLLFYDFMENGSL 681 (933)
Q Consensus 604 ~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~~~~~~~~~~~~~lv~e~~~~gsL 681 (933)
+.|+.|-...+|++...+ ++.+++|+....... .-+..+|+.+++.+...++ .++++++. + ..||||++|.++
T Consensus 114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~-~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~~l 188 (458)
T 2qg7_A 114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKTDE-IINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGYAL 188 (458)
T ss_dssp EEECC--CEEEEEEEETTTTEEEEEEEECC-CCS-CSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSEEC
T ss_pred EEcCCCeEeEEEEEEECCCCceEEEEECCCChhh-hcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCccC
Confidence 468889999999998765 477888887443221 1112578888888865444 46676663 2 359999987544
No 440
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.54 E-value=0.0063 Score=66.69 Aligned_cols=141 Identities=18% Similarity=0.194 Sum_probs=82.8
Q ss_pred eeeecccceeEEEEEEcC--------CceEEEEEecccCchhHHHHHHHHHHHhcCC-CCceeeeeeEEecCCccEEEEE
Q 002349 604 YIIGYGASSTVYKCVLKN--------CKPVAIKRLYSHYPQCLKEFETELETVGSIK-HRNLVSLQGYSLSSSGNLLFYD 674 (933)
Q Consensus 604 ~~lG~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e 674 (933)
+.+..|-...+|++...+ ++.+++|+.... ......+.+|+++++.+. +.-..++++++.+ .+|||
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e 130 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQ 130 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEE
Confidence 467778888999998642 467888886332 223456678999988874 2223566666543 28999
Q ss_pred ecCCCCHHH-----------------HhcCCC--CCCCCC--HHHHHHHHHHHHH-------------------HHHHhh
Q 002349 675 FMENGSLWD-----------------ILHGPT--KKKKLD--WDTRLKIALGAAQ-------------------GLAYLH 714 (933)
Q Consensus 675 ~~~~gsL~~-----------------~l~~~~--~~~~l~--~~~~~~i~~~i~~-------------------~l~~LH 714 (933)
|++|..+.. .+|... ...... +.++.++..++.. .++.|.
T Consensus 131 ~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 210 (379)
T 3feg_A 131 YIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLR 210 (379)
T ss_dssp CCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHH
T ss_pred EecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHH
Confidence 999865431 112211 111222 3455555544322 122322
Q ss_pred ----cC-CCCCeeeccCCCCceEeCCC----CCeEEeecccccc
Q 002349 715 ----HD-CSPRIIHRDVKSSNILLDKD----FEAHLTDFGIAKS 749 (933)
Q Consensus 715 ----~~-~~~~ivH~Dikp~NIll~~~----~~~kl~DfGla~~ 749 (933)
.. ....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 211 ~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 211 KLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 11 13468899999999999876 7899999998854
No 441
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.50 E-value=0.0026 Score=58.14 Aligned_cols=57 Identities=23% Similarity=0.344 Sum_probs=42.4
Q ss_pred eeeccCCccC-CCCCCCCCCccccccccccCcccccccccccccccccceEEccCCcccc
Q 002349 407 TLDMSNNKIS-GSIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSHNHLTG 465 (933)
Q Consensus 407 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 465 (933)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.-
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 6677777775 24554432 357888888888887777788888889999999998763
No 442
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=96.36 E-value=0.024 Score=55.63 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=68.1
Q ss_pred CCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCceEeCCCCCeEEeecccccccccCCCcee
Q 002349 679 GSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSYTS 758 (933)
Q Consensus 679 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~~~ 758 (933)
-||.++|. ..+.++++++++.++.|.+.+|.-.-.. . .-..+=+.|..|++..+|.|...+ +.+.
T Consensus 33 vSL~eIL~--~~~~PlsEEqaWALc~Qc~~~L~~~~~~-~-~~~~~i~~~~~i~l~~dG~V~f~~-~~s~---------- 97 (229)
T 2yle_A 33 LSLEEILR--LYNQPINEEQAWAVCYQCCGSLRAAARR-R-QPRHRVRSAAQIRVWRDGAVTLAP-AADD---------- 97 (229)
T ss_dssp EEHHHHHH--HHTSCCCHHHHHHHHHHHHHHHHHHHHT-T-CCCCCCCSGGGEEEETTSCEEECC-C-------------
T ss_pred ccHHHHHH--HcCCCcCHHHHHHHHHHHHHHHHhhhhc-c-cCCceecCCcceEEecCCceeccc-cccc----------
Confidence 37899986 4578999999999999999998876211 0 111333457899999999998764 2110
Q ss_pred eeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCC
Q 002349 759 TYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKA 800 (933)
Q Consensus 759 ~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p 800 (933)
.....+.|||... ...+.+.=|||+|+++|..+--..|
T Consensus 98 ---~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 98 ---AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp ------------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred ---ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 0122466888764 3467889999999999998864443
No 443
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.23 E-value=0.013 Score=63.43 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=27.6
Q ss_pred CCeeeccCCCCceEeCCCCCeEEeecccccc
Q 002349 719 PRIIHRDVKSSNILLDKDFEAHLTDFGIAKS 749 (933)
Q Consensus 719 ~~ivH~Dikp~NIll~~~~~~kl~DfGla~~ 749 (933)
..++|+|+.+.||+++.++.+.++||+.+..
T Consensus 206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~ 236 (339)
T 3i1a_A 206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML 236 (339)
T ss_dssp CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence 4699999999999999888899999987754
No 444
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.22 E-value=0.0063 Score=66.87 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=43.8
Q ss_pred eeeecccceeEEEEEEcC---------CceEEEEEecccCchhHHHHHHHHHHHhcCCCCc-eeeeeeEEecCCccEEEE
Q 002349 604 YIIGYGASSTVYKCVLKN---------CKPVAIKRLYSHYPQCLKEFETELETVGSIKHRN-LVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 604 ~~lG~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~lv~ 673 (933)
..++.|....+|++...+ ++.+++|+...... ...+...|+++++.+...+ +.++++.. . -++||
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~-~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~v~ 113 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVD-ELYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGRIE 113 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGG-GTSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcc-ceecHHHHHHHHHHHHhcCCCCceEEec--C--CcEEE
Confidence 467888888999998654 25788887654322 1122467888888774333 34566544 2 37899
Q ss_pred EecCCCCH
Q 002349 674 DFMENGSL 681 (933)
Q Consensus 674 e~~~~gsL 681 (933)
||++|..+
T Consensus 114 e~i~G~~l 121 (369)
T 3c5i_A 114 EWLYGDPL 121 (369)
T ss_dssp ECCCSEEC
T ss_pred EEecCCcC
Confidence 99987543
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=95.47 E-value=0.039 Score=60.60 Aligned_cols=142 Identities=19% Similarity=0.179 Sum_probs=82.1
Q ss_pred eeeecccceeEEEEEEcC--------CceEEEEEecccCch-----------h-------HHHHHHHHHHHhcCC-CCce
Q 002349 604 YIIGYGASSTVYKCVLKN--------CKPVAIKRLYSHYPQ-----------C-------LKEFETELETVGSIK-HRNL 656 (933)
Q Consensus 604 ~~lG~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~-----------~-------~~~~~~E~~~l~~l~-h~ni 656 (933)
+.|..|-...+|++...+ .+.|.+++.-..... . .+....|.++++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 457778888999998754 257888876432211 0 112234888888874 3335
Q ss_pred eeeeeEEecCCccEEEEEecCCCCHHH--H---------------hcCCC--CCCCCC--HHHHHHHHHHHH--------
Q 002349 657 VSLQGYSLSSSGNLLFYDFMENGSLWD--I---------------LHGPT--KKKKLD--WDTRLKIALGAA-------- 707 (933)
Q Consensus 657 v~~~~~~~~~~~~~lv~e~~~~gsL~~--~---------------l~~~~--~~~~l~--~~~~~~i~~~i~-------- 707 (933)
.++++++.. .+|+||++|.+|.. + +|... ...... +..+.++..++.
T Consensus 138 Pkl~~~~~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 567777643 28999999755421 1 12211 111222 234444433321
Q ss_pred --------------HHH----HHhhcC-CCCCeeeccCCCCceEeCCC------CCeEEeecccccc
Q 002349 708 --------------QGL----AYLHHD-CSPRIIHRDVKSSNILLDKD------FEAHLTDFGIAKS 749 (933)
Q Consensus 708 --------------~~l----~~LH~~-~~~~ivH~Dikp~NIll~~~------~~~kl~DfGla~~ 749 (933)
.-+ +++... ....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 112 222221 13468899999999999876 7899999998753
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=94.06 E-value=0.16 Score=56.38 Aligned_cols=141 Identities=14% Similarity=0.139 Sum_probs=83.2
Q ss_pred ceeeecccceeEEEEEEcC--------CceEEEEEecccCchhHHHHHHHHHHHhcCCCCc-eeeeeeEEecCCccEEEE
Q 002349 603 KYIIGYGASSTVYKCVLKN--------CKPVAIKRLYSHYPQCLKEFETELETVGSIKHRN-LVSLQGYSLSSSGNLLFY 673 (933)
Q Consensus 603 ~~~lG~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~lv~ 673 (933)
.+.+..|-...+|+....+ ++.+++|+..... ...-+..+|.++++.+...+ ..++++.+. -+.||
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t-~~~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I~ 149 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV-GKFYDSKVELDVFRYLSNINIAPNIIADFP----EGRIE 149 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CCCCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEE
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc-chhcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEEE
Confidence 3467778888999998763 5778888864432 22223367888888774222 345555432 37899
Q ss_pred EecCCCCHHH-----------------HhcCC--------C--CCCCCCHHHHHHHHHHH-------------------H
Q 002349 674 DFMENGSLWD-----------------ILHGP--------T--KKKKLDWDTRLKIALGA-------------------A 707 (933)
Q Consensus 674 e~~~~gsL~~-----------------~l~~~--------~--~~~~l~~~~~~~i~~~i-------------------~ 707 (933)
||++|..+.. .+|.. . ...+.-+.++.++..++ .
T Consensus 150 efI~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~~~L~~~~~~~p~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~ 229 (424)
T 3mes_A 150 EFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRADFPSRFDKEPILFKRIYLWREEAKIQVSKNNFQIDKELYSKIL 229 (424)
T ss_dssp ECCCSEECCTGGGGSHHHHHHHHHHHHHHHTHHHHCTTSCTTSCCSCCHHHHHHHHHHHHHHHHHTCC--CCHHHHHHHH
T ss_pred EEeCCccCChhhcCCHHHHHHHHHHHHHHhcCchhhccCccccCCCCcHHHHHHHHHHHHHHhhcccchhhccccHHHHH
Confidence 9999865421 01110 0 11111244444443322 1
Q ss_pred HHHHHhhc---------------------CCCCCeeeccCCCCceEeCCCCCeEEeecccccc
Q 002349 708 QGLAYLHH---------------------DCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKS 749 (933)
Q Consensus 708 ~~l~~LH~---------------------~~~~~ivH~Dikp~NIll~~~~~~kl~DfGla~~ 749 (933)
..+.+|.+ .....++|+|+.+.||+ +.++.+.++||..|..
T Consensus 230 ~e~~~L~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~ 291 (424)
T 3mes_A 230 EEIDQLEELIMGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLL-QTQNNIRMIDYEYSAI 291 (424)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHTTCGGGCEEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred HHHHHHHHHHhhhcccccccccccccccCCCCceEECCCCCcccee-cCCCcEEEEecccCCc
Confidence 22233321 11345889999999999 7788999999998864
No 447
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=85.23 E-value=2.1 Score=42.01 Aligned_cols=123 Identities=10% Similarity=0.106 Sum_probs=83.8
Q ss_pred HHHHHhcCCCCceeeeeeEEecCCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeee
Q 002349 644 ELETVGSIKHRNLVSLQGYSLSSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSPRIIH 723 (933)
Q Consensus 644 E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH 723 (933)
|+..|.. .||+.+.. .+-.+.+.+.+.|+.-+. ...+- .-...+...+++++.+++...++++ .=+|
T Consensus 36 el~LL~~-~~~~Fl~~-~I~e~eD~v~~~y~~~~~--~~~f~----~ik~~~~~eKlr~l~ni~~l~~~~~-----~r~t 102 (215)
T 4ann_A 36 LMYLLEQ-HSPYFIDA-ELTELRDSFQIHYDINDN--HTPFD----NIKSFTKNEKLRYLLNIKNLEEVNR-----TRYT 102 (215)
T ss_dssp GGGGGGS-CCTTBCCE-EEEECSSEEEEEECCCTT--SEEGG----GGGGSCHHHHHHHHHHGGGGGGGGG-----SSEE
T ss_pred HHHHHhc-cCCcccce-EEEEcccEEEEEEEcCcc--cCCHH----HHHhcCHHHHHHHHHHHHHHHHHhc-----CceE
Confidence 4444543 68888865 455556655555554432 22221 1235789999999999999887777 3488
Q ss_pred ccCCCCceEeCCCCCeEEeecccccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCC
Q 002349 724 RDVKSSNILLDKDFEAHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVD 802 (933)
Q Consensus 724 ~Dikp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~ 802 (933)
--+.|+|++++.++.+++.-.|+-..+ +|. ..++..=.-.+=+++..+++++..|+
T Consensus 103 f~L~P~NL~f~~~~~p~i~~RGik~~l------------------~P~-----~~~ee~fL~qyKAliiall~~K~~Fe 158 (215)
T 4ann_A 103 FVLAPDELFFTRDGLPIAKTRGLQNVV------------------DPL-----PVSEAEFLTRYKALVICAFNEKQSFD 158 (215)
T ss_dssp CCCSGGGEEECTTSCEEESCCEETTTB------------------SCC-----CCCHHHHHHHHHHHHHHHHCTTCCHH
T ss_pred EEEecceEEEcCCCCEEEEEccCccCC------------------CCC-----CCCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 899999999999999999887764332 121 12333334567788899999998885
No 448
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=83.66 E-value=2.1 Score=46.97 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=25.1
Q ss_pred CeeeccCCCCceEe------CCCCCeEEeecccccc
Q 002349 720 RIIHRDVKSSNILL------DKDFEAHLTDFGIAKS 749 (933)
Q Consensus 720 ~ivH~Dikp~NIll------~~~~~~kl~DfGla~~ 749 (933)
.++|+|+.+.||++ +++..++++||-.|..
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 35799999999999 4567799999998864
No 449
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=77.82 E-value=5 Score=39.46 Aligned_cols=115 Identities=14% Similarity=0.183 Sum_probs=79.5
Q ss_pred CCCceeeeeeEEecCCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHH-HhhcCCCCCeeeccCCCCc
Q 002349 652 KHRNLVSLQGYSLSSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLA-YLHHDCSPRIIHRDVKSSN 730 (933)
Q Consensus 652 ~h~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~-~LH~~~~~~ivH~Dikp~N 730 (933)
.||+. -..+-.+.+...+.|+.-+++-=...+ ..++..++++++.+++.... +++ .-+|--+.|+|
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i------~~~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~N 114 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAI------RKTTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPEN 114 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHH------HTSCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGG
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHH------HhcCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCce
Confidence 68887 344446677777777765443222233 24788999999999988777 666 45888999999
Q ss_pred eEeCCCCCeEEeecccccccccCCCceeeeecccccccCccccccCCCCcchhhHHHHHHHHHHHhCCCCCC
Q 002349 731 ILLDKDFEAHLTDFGIAKSLCVSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVD 802 (933)
Q Consensus 731 Ill~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGv~l~elltg~~p~~ 802 (933)
+++|.++.+++.-.|+-..+ +|.- .++..=.-.+=+++..++.++..|+
T Consensus 115 L~f~~~~~p~i~hRGi~~~l------------------pP~e-----~~ee~fl~qyKali~all~~K~~Fe 163 (219)
T 4ano_A 115 LMFNRALEPFFLHVGVKESL------------------PPDE-----WDDERLLREVKATVLALTEGEYRFD 163 (219)
T ss_dssp EEECTTCCEEESCCEETTTB------------------SSCS-----CCHHHHHHHHHHHHHHHTTCSSCHH
T ss_pred EEEeCCCcEEEEEcCCcccC------------------CCCC-----CCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 99999999999888864332 2221 2222233466778888888888775
No 450
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=74.98 E-value=0.38 Score=54.10 Aligned_cols=59 Identities=8% Similarity=0.017 Sum_probs=17.0
Q ss_pred ceeeecccceeEEEEEEcC-CceEEE------EEecccC--chhHHHHHHHHHHHhcCCCCceeeeeeEEe
Q 002349 603 KYIIGYGASSTVYKCVLKN-CKPVAI------KRLYSHY--PQCLKEFETELETVGSIKHRNLVSLQGYSL 664 (933)
Q Consensus 603 ~~~lG~G~~g~Vy~~~~~~-~~~vav------K~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~ 664 (933)
.+.+| ||.||+|.+.. ..+||| |..+... .+....+.+|..+++..+|||+++.+++..
T Consensus 147 ~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 147 YEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp TTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred cccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 34566 99999999865 367888 7665432 233456888999999999999999988764
No 451
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=72.52 E-value=3.4 Score=28.84 Aligned_cols=6 Identities=33% Similarity=0.717 Sum_probs=2.5
Q ss_pred hhhhhh
Q 002349 532 KAAILG 537 (933)
Q Consensus 532 ~~~~~~ 537 (933)
.+.++|
T Consensus 15 a~~vVG 20 (44)
T 2jwa_A 15 ISAVVG 20 (44)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334444
No 452
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=52.60 E-value=9.9 Score=25.69 Aligned_cols=13 Identities=15% Similarity=0.506 Sum_probs=6.8
Q ss_pred hhhhhhhhhhhHH
Q 002349 530 ISKAAILGIALGA 542 (933)
Q Consensus 530 ~~~~~~~~~~~~~ 542 (933)
.+..++.|+++|.
T Consensus 8 ls~GaIAGiVvG~ 20 (38)
T 2k1k_A 8 LTGGEIVAVIFGL 20 (38)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCCCceeeeehHH
Confidence 3445555555554
No 453
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=38.14 E-value=25 Score=23.99 Aligned_cols=12 Identities=42% Similarity=0.850 Sum_probs=5.0
Q ss_pred hhhhhhHHHHHH
Q 002349 535 ILGIALGALVIL 546 (933)
Q Consensus 535 ~~~~~~~~~~l~ 546 (933)
+.+++.|+.+++
T Consensus 16 ~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 16 IGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHH
T ss_pred EeehhHHHHHHH
Confidence 344444444333
No 454
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=37.61 E-value=1.1e+02 Score=31.94 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=71.1
Q ss_pred eeeecccceeEEEEEEcCCceEEEEEecccCchhHHHHHHHHHHHhcCCCCceeeeeeE--------------E------
Q 002349 604 YIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGY--------------S------ 663 (933)
Q Consensus 604 ~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~--------------~------ 663 (933)
+..-.|. +-||.+.. ++..|+||-. .....+.+-.++...-.+.-|+..-+.-. -
T Consensus 75 ~~s~~Gs-tgvff~~t-d~~~~VVK~s---~~l~~E~l~s~LA~~LGlpiP~~Riv~~~~~E~~e~~~~L~~~~~~~~~l 149 (342)
T 1cja_A 75 ERSEKGT-EGLFFVET-ESGVFIVKRS---TNIESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAIDKSFRVI 149 (342)
T ss_dssp EECCSTT-SCEEEEEE-SSCEEEEECC---TTHHHHHHHHHHHHHHTCCCCCEEEEESSSHHHHHHHHHHHHHCSSSCHH
T ss_pred EeccCCC-CCeEEEEe-CCCEEEEeCc---HHHHHHHHHHHHHHHhCCCCCCeeEEeeCcHHHHHHHHHHHHhhhhhHHH
Confidence 4445555 45665555 4678899944 22233445555555555666664322211 0
Q ss_pred --ecCCccEEEEEecCCCCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-Ceee-ccCCCCceEeCCCCC-
Q 002349 664 --LSSSGNLLFYDFMENGSLWDILHGPTKKKKLDWDTRLKIALGAAQGLAYLHHDCSP-RIIH-RDVKSSNILLDKDFE- 738 (933)
Q Consensus 664 --~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH-~Dikp~NIll~~~~~- 738 (933)
......+++|||.+|..|.+.-+. .....+..+....+ +-+-++.++.++..+ +.+. .--.++|||++++..
T Consensus 150 ~~l~~~~~~l~meyv~G~~L~e~~~~-~~~~~f~~~~~k~L--G~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~~~n~~ 226 (342)
T 1cja_A 150 TTLANQANILLMELVRGITLNKLTTT-SAPEVLTKSTMQQL--GSLMALDVIVNNSDRLPIAWTNEGNLDNIMLSERGAT 226 (342)
T ss_dssp HHHTTCSEEEEEECCCEEESTTCCSS-SHHHHSCHHHHHHH--HHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEESBTTC
T ss_pred HHhhcccceehhhhcCCCccccchhh-hhhhhcCHHHHHhh--chhheehhhhcCCccCcccccCCCChhheEEeCCCCe
Confidence 012245699999987655432110 00011222222221 123456666654322 2221 235789999987554
Q ss_pred eEEeecccccc
Q 002349 739 AHLTDFGIAKS 749 (933)
Q Consensus 739 ~kl~DfGla~~ 749 (933)
+.++|-+.+..
T Consensus 227 ~~~IDhn~af~ 237 (342)
T 1cja_A 227 VVPIDSKIIPL 237 (342)
T ss_dssp EEECSCCCCCC
T ss_pred EEEEcCCcccc
Confidence 88999998854
No 455
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=37.38 E-value=16 Score=25.52 Aligned_cols=27 Identities=30% Similarity=0.301 Sum_probs=11.7
Q ss_pred chhhhhhhhhhhHHHHHHHHHHhhhccc
Q 002349 529 TISKAAILGIALGALVILLMILVAACRP 556 (933)
Q Consensus 529 ~~~~~~~~~~~~~~~~l~~~~~~~~~r~ 556 (933)
.|... ++|.++++++++...+++++|+
T Consensus 12 ~IA~g-VVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 12 SIATG-MVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp SSTHH-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEee-hhHHHHHHHHHHHHHHHHhhhh
Confidence 34444 4444444444444444444443
No 456
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=33.41 E-value=24 Score=24.64 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=11.9
Q ss_pred hhhhhhhHHHHHHHHHHhhhcccC
Q 002349 534 AILGIALGALVILLMILVAACRPH 557 (933)
Q Consensus 534 ~~~~~~~~~~~l~~~~~~~~~r~~ 557 (933)
.++|.+++++++....+++++|++
T Consensus 15 gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 15 GVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eehHHHHHHHHHHHHHHHHhhhhh
Confidence 344545555555555444444443
No 457
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=32.36 E-value=70 Score=26.79 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=20.3
Q ss_pred CCCCCCCCccccccccccCcccccccccccccccccceEEccC
Q 002349 418 SIPSPLGDLEHLLKLNLSRNQLTGFIPGEFGNLRSVMEIDLSH 460 (933)
Q Consensus 418 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 460 (933)
+....|.++.+|+.+.|-.+ ++.+-..+|.++.+|+.+.+..
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33444555555555555433 3334444555555555555544
No 458
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=27.40 E-value=14 Score=20.63 Aligned_cols=9 Identities=44% Similarity=1.354 Sum_probs=7.1
Q ss_pred CCCCccceE
Q 002349 54 DYCVWRGIT 62 (933)
Q Consensus 54 ~~c~w~gv~ 62 (933)
..|+|+|..
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 469999975
No 459
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.78 E-value=1e+02 Score=25.79 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=14.7
Q ss_pred CCcccCCCCCceeccCcccCCCCCcccccccccceecC
Q 002349 349 DNLSSCTNLNSLNVHGNKLNGTIPPAFQRLESMTYLNL 386 (933)
Q Consensus 349 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 386 (933)
..|.+|.+|+.+.+..+ ++.+-..+|.++.+|+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 34444444444444432 22233334444444444433
No 460
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.58 E-value=1.1e+02 Score=22.40 Aligned_cols=16 Identities=31% Similarity=0.262 Sum_probs=6.6
Q ss_pred hhhhhhhhhHHHHHHH
Q 002349 532 KAAILGIALGALVILL 547 (933)
Q Consensus 532 ~~~~~~~~~~~~~l~~ 547 (933)
.++++..++|.+++++
T Consensus 12 ~wiIi~svl~GLllL~ 27 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLT 27 (54)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 461
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=20.55 E-value=1.1e+02 Score=22.42 Aligned_cols=15 Identities=33% Similarity=0.425 Sum_probs=6.0
Q ss_pred hhhhhhhhHHHHHHH
Q 002349 533 AAILGIALGALVILL 547 (933)
Q Consensus 533 ~~~~~~~~~~~~l~~ 547 (933)
++++..++|.+++++
T Consensus 10 WiIi~svl~GLLLL~ 24 (54)
T 2l8s_A 10 WVILLSAFAGLLLLM 24 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444333333
No 462
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=20.52 E-value=3.7e+02 Score=30.58 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=49.5
Q ss_pred eeeeEEecCCccEEEEEecCCCCHHHHhcCC------------CCCC--CCCHHHHHHHHHHHH--HHHHHhhcCCCCCe
Q 002349 658 SLQGYSLSSSGNLLFYDFMENGSLWDILHGP------------TKKK--KLDWDTRLKIALGAA--QGLAYLHHDCSPRI 721 (933)
Q Consensus 658 ~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~------------~~~~--~l~~~~~~~i~~~i~--~~l~~LH~~~~~~i 721 (933)
+.+.+........ +.|++++.++.+.+... .... ...++.+..+++.+| +.+.|+= ||
T Consensus 403 ~~Y~Vipls~~~G-lIE~V~~~tl~~il~~~~~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YIL-----Gi 476 (614)
T 3ls8_A 403 TPYKVLATSTKHG-FMQFIQSVPVAEVLDTEGSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYIL-----GV 476 (614)
T ss_dssp CCCCEEESSSSEE-EEECCCCEEHHHHHHHTSSHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHH-----TC
T ss_pred eccEEEEecCCCc-eEEEeCCccHHHHHHccChHHHHHHHhCCCccccccccHHHHHHHHHHHHHHhHhheee-----ec
Confidence 3444444444433 45777765555554210 0111 123555666666554 3455554 33
Q ss_pred eeccCCCCceEeCCCCCeEEeeccccc
Q 002349 722 IHRDVKSSNILLDKDFEAHLTDFGIAK 748 (933)
Q Consensus 722 vH~Dikp~NIll~~~~~~kl~DfGla~ 748 (933)
+|=.++|||++.+|.+.=+|||.+-
T Consensus 477 --gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 477 --GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp --CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred --cCCCCcceeEcCCCCEeeeehHHhh
Confidence 5668999999999999999999873
Done!