BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002350
(933 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 212 bits (539), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 209/674 (31%), Positives = 313/674 (46%), Gaps = 58/674 (8%)
Query: 196 LFEMNLERNFIGSPL--ITCLKNLTRLKILDISSNQLNGSLPSVISN---LTSLEYLDLS 250
L ++L RN + P+ +T L + + LK L++SSN L+ P +S L SLE LDLS
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLS 156
Query: 251 HNNFEGMFPLSSLANHS--KLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSY 308
N+ G + + + +L+ L +S + V + L L ++ N +
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV---NLEFLDVSSNNFSTGI 213
Query: 309 PDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLH 368
P FL L++LD+S NKL G+F + + +L++L + +N F G +P L
Sbjct: 214 P-FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQ 269
Query: 369 HLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSG 428
+L ++ N F G++P + L +D+S N F G +P G L L LS N FSG
Sbjct: 270 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 329
Query: 429 GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTS 488
L + L++LDLS N F G+ NL S S
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL-----------------------SAS 366
Query: 489 LQVLDISNNMLSGHI-PHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 547
L LD+S+N SG I P+ N + L+ L + N G +P L+N L L +S N
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 548 LSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH 606
LSG I SSL +LS + L L N L G IP EL L TL L N +G IP ++
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 607 SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS--WRVGSDDV 664
+NL ++ L N L G IP + +L+ LA++ LS N FSG+IP + S W + ++
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 665 LNGSK-----LNSPELDEEIEFGS----LGNNRSSNTMFGMWRWLSALEKRAAIDERVEI 715
NG+ S ++ G + N+ G L R+ R+
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 716 EFAMKNRYEIYNG------SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXX 769
+Y G N + LD+S N L+G IP +IG + +
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 770 GSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATF 829
GSIP+ +L+ + LD+S NKL G+IP ++AL L+ ++S NNLSG P+ GQF TF
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 726
Query: 830 DESSYRGNPSLCAW 843
+ + NP LC +
Sbjct: 727 PPAKFLNNPGLCGY 740
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 153/526 (29%), Positives = 226/526 (42%), Gaps = 75/526 (14%)
Query: 299 LTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWL-LRNNPKLEVLLLKNNSF---- 353
L+ ++NGS F L LDLS N L G T L + L+ L + +N+
Sbjct: 81 LSNSHINGSVSGFKCSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 354 --SGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ----KLMYMDISKNCFEGNIP 407
SG L+L + L LD+S N+ G + +G +L +L ++ IS N G++
Sbjct: 140 KVSGGLKL-----NSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVD 192
Query: 408 YSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRH 467
S L LD+S N FS G+ + C +L+ LD+S N G F T L+
Sbjct: 193 VS--RCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 248
Query: 468 LYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN 527
L +N F G I L SLQ L ++ N +G IP ++ L L +S NH G
Sbjct: 249 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 306
Query: 528 VPVQLNNLERLRILDISENRLSG--PIASSLNLSSVEHLSLQKNALNGLIPGELFR-SCK 584
VP + L L +S N SG P+ + L + ++ L L N +G +P L S
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 366
Query: 585 LVTLNLRDNTFSGRIPHQI--NEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK 642
L+TL+L N FSG I + N + L+ L L N G IP L +L + LS N
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 643 FSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSA 702
SG+IP ++ SKL +L WL+
Sbjct: 427 LSGTIPSSLGSL-------------SKLRDLKL-----------------------WLNM 450
Query: 703 LEKRAAID-------ERVEIEFAMKNRYEIYNG-SNVNRVTGLDLSCNQLTGEIPSDIGQ 754
LE + E + ++F EI +G SN + + LS N+LTGEIP IG+
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 755 LQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLTGQIPPQL 800
L+ + G+IP + + + LD++ N G IP +
Sbjct: 510 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 38/273 (13%)
Query: 566 LQKNALNGLIPGELFR-SCKLVTLNLRDNTFSGRIPH--QINEHSNLRFLLLGGNHLQ-- 620
L + +NG + G F+ S L +L+L N+ SG + + S L+FL + N L
Sbjct: 81 LSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 621 GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDD-------VLNGSKLNSP 673
G + L +L L ++DLS N SG ANV+ W V SD ++G+K+ S
Sbjct: 139 GKVSGGL-KLNSLEVLDLSANSISG------ANVVGW-VLSDGCGELKHLAISGNKI-SG 189
Query: 674 ELDEE----IEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGS 729
++D +EF + +N S T SAL+ ++ +F+ S
Sbjct: 190 DVDVSRCVNLEFLDVSSNNFS-TGIPFLGDCSALQHLDISGNKLSGDFSRAI-------S 241
Query: 730 NVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSN-LKMIESLDIS 788
+ L++S NQ G IP L+++ G IP+ S + LD+S
Sbjct: 242 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 299
Query: 789 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 821
N G +PP + + L +S NN SG P
Sbjct: 300 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 146 QLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNF 205
+ L + +N I + ++P L L L N I GS ++ + +L+ L ++L N
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNK 688
Query: 206 IGSPLITCLKNLTRLKILDISSNQLNGSLPSV 237
+ + + LT L +D+S+N L+G +P +
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 211 bits (538), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 209/678 (30%), Positives = 315/678 (46%), Gaps = 58/678 (8%)
Query: 196 LFEMNLERNFIGSPL--ITCLKNLTRLKILDISSNQLNGSLPSVISN---LTSLEYLDLS 250
L ++L RN + P+ +T L + + LK L++SSN L+ P +S L SLE LDLS
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLS 159
Query: 251 HNNFEGMFPLSSLANHS--KLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSY 308
N+ G + + + +L+ L +S + V + L L ++ N +
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV---NLEFLDVSSNNFSTGI 216
Query: 309 PDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLH 368
P FL L++LD+S NKL G+F + + +L++L + +N F G +P L
Sbjct: 217 P-FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQ 272
Query: 369 HLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSG 428
+L ++ N F G++P + L +D+S N F G +P G L L LS N FSG
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 429 GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTS 488
L + L++LDLS N F G+ NL S S
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL-----------------------SAS 369
Query: 489 LQVLDISNNMLSGHI-PHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 547
L LD+S+N SG I P+ N + L+ L + N G +P L+N L L +S N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 548 LSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH 606
LSG I SSL +LS + L L N L G IP EL L TL L N +G IP ++
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 607 SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS--WRVGSDDV 664
+NL ++ L N L G IP + +L+ LA++ LS N FSG+IP + S W + ++
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 665 LNGSKL-----NSPELDEEIEFGS----LGNNRSSNTMFGMWRWLSALEKRAAIDERVEI 715
NG+ S ++ G + N+ G L R+ R+
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 716 EFAMKNRYEIYNG------SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXX 769
+Y G N + LD+S N L+G IP +IG + +
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 770 GSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATF 829
GSIP+ +L+ + LD+S NKL G+IP ++AL L+ ++S NNLSG P+ GQF TF
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729
Query: 830 DESSYRGNPSLCAWLIQQ 847
+ + NP LC + + +
Sbjct: 730 PPAKFLNNPGLCGYPLPR 747
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 152/522 (29%), Positives = 225/522 (43%), Gaps = 67/522 (12%)
Query: 299 LTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWL-LRNNPKLEVLLLKNNS--FSG 355
L+ ++NGS F L LDLS N L G T L + L+ L + +N+ F G
Sbjct: 84 LSNSHINGSVSGFKCSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 356 ILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ----KLMYMDISKNCFEGNIPYSAG 411
+ K + L LD+S N+ G + +G +L +L ++ IS N G++ S
Sbjct: 143 KVS-GGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVS-- 197
Query: 412 EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFE 471
L LD+S N FS G+ + C +L+ LD+S N G F T L+ L
Sbjct: 198 RCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 472 NNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ 531
+N F G I L SLQ L ++ N +G IP ++ L L +S NH G VP
Sbjct: 256 SNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313
Query: 532 LNNLERLRILDISENRLSG--PIASSLNLSSVEHLSLQKNALNGLIPGELFR-SCKLVTL 588
+ L L +S N SG P+ + L + ++ L L N +G +P L S L+TL
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373
Query: 589 NLRDNTFSGRIPHQI--NEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS 646
+L N FSG I + N + L+ L L N G IP L +L + LS N SG+
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 647 IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKR 706
IP ++ SKL +L WL+ LE
Sbjct: 434 IPSSLGSL-------------SKLRDLKL-----------------------WLNMLEGE 457
Query: 707 AAID-------ERVEIEFAMKNRYEIYNG-SNVNRVTGLDLSCNQLTGEIPSDIGQLQAI 758
+ E + ++F EI +G SN + + LS N+LTGEIP IG+L+ +
Sbjct: 458 IPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 759 LAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLTGQIPPQL 800
G+IP + + + LD++ N G IP +
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 38/273 (13%)
Query: 566 LQKNALNGLIPGELFR-SCKLVTLNLRDNTFSGRIPH--QINEHSNLRFLLLGGNHLQ-- 620
L + +NG + G F+ S L +L+L N+ SG + + S L+FL + N L
Sbjct: 84 LSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 621 GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDD-------VLNGSKLNSP 673
G + L +L L ++DLS N SG ANV+ W V SD ++G+K+ S
Sbjct: 142 GKVSGGL-KLNSLEVLDLSANSISG------ANVVGW-VLSDGCGELKHLAISGNKI-SG 192
Query: 674 ELDEE----IEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGS 729
++D +EF + +N S T SAL+ ++ +F+ S
Sbjct: 193 DVDVSRCVNLEFLDVSSNNFS-TGIPFLGDCSALQHLDISGNKLSGDFSRAI-------S 244
Query: 730 NVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSN-LKMIESLDIS 788
+ L++S NQ G IP L+++ G IP+ S + LD+S
Sbjct: 245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302
Query: 789 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 821
N G +PP + + L +S NN SG P
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 146 QLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNF 205
+ L + +N I + ++P L L L N I GS ++ + +L+ L ++L N
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNK 691
Query: 206 IGSPLITCLKNLTRLKILDISSNQLNGSLPSV 237
+ + + LT L +D+S+N L+G +P +
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 130/319 (40%), Gaps = 84/319 (26%)
Query: 528 VPVQLNNLERLRILDISE-NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKL 585
+P L NL L L I N L GPI ++ L+ + +L + ++G IP L + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 586 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKL-AMMDLSRNKFS 644
VTL+ N SG +P I+ NL + GN + G IPD KL M +SRN+ +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 645 GSIPPCFANV-LSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSAL 703
G IPP FAN+ L++ S ++L G D + FGS N + + L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEG--------DASVLFGSDKNTQKIH-----------L 228
Query: 704 EKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXX 763
K + + ++ + N+N GLDL N++
Sbjct: 229 AKNSLAFDLGKVGLS----------KNLN---GLDLRNNRI------------------- 256
Query: 764 XXXXXXGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK 823
G++P+ + LK + SL++S+N L G+I P
Sbjct: 257 -----YGTLPQGLTQLKFLHSLNVSFNNLCGEI------------------------PQG 287
Query: 824 GQFATFDESSYRGNPSLCA 842
G FD S+Y N LC
Sbjct: 288 GNLQRFDVSAYANNKCLCG 306
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 110/253 (43%), Gaps = 15/253 (5%)
Query: 247 LDLSHNNFEGMFPL-SSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLN 305
LDLS N +P+ SSLAN L L + NN + +QL L +T N++
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 306 GSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHD 365
G+ PDFL L LD S+N L G P + + P L + N SG +P +
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISG--AIPDSYGS 171
Query: 366 F---LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLS 422
F + IS N GK+P + L ++D+S+N EG+ G K + L+
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 423 RNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDG 482
+N + L + ++ +L LDL NN G L L L NN G+I G
Sbjct: 230 KNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Query: 483 LLSSTSLQVLDIS 495
+LQ D+S
Sbjct: 288 ----GNLQRFDVS 296
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 102/230 (44%), Gaps = 32/230 (13%)
Query: 449 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG------- 501
NN G LT+L +LY + N SG I D L +L LD S N LSG
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 502 -----------------HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDIS 544
IP G+FS +++S+N L G +P NL L +D+S
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205
Query: 545 ENRLSGPIASSLNLS--SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQ 602
N L G AS L S + + + L KN+L G++ S L L+LR+N G +P
Sbjct: 206 RNMLEGD-ASVLFGSDKNTQKIHLAKNSL-AFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 603 INEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK-FSGS-IPPC 650
+ + L L + N+L G IP Q LQ+ + + NK GS +P C
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 81/195 (41%), Gaps = 4/195 (2%)
Query: 189 GICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLD 248
I +L L + + + + L + L LD S N L+G+LP IS+L +L +
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 249 LSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSY 308
N G P S + SKL + +RN L K L + L++ L G
Sbjct: 156 FDGNRISGAIP-DSYGSFSKLFTSMTISRNR-LTGKIPPTFANLNLAFVDLSRNMLEGDA 213
Query: 309 PDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLH 368
+ + + L+ N L + L N L L L+NN G L + FLH
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN--LNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 369 HLDISCNNFRGKLPH 383
L++S NN G++P
Sbjct: 272 SLNVSFNNLCGEIPQ 286
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 162/348 (46%), Gaps = 38/348 (10%)
Query: 184 SQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTS 243
S T +G+C++ ++ +NL+++ + + TR++ LD+++ LNG LPS I + S
Sbjct: 244 SATFEGLCDM-SVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNS 301
Query: 244 LEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCN 303
L+ L L+ N+F+ + +++ A+ L L + L + T L L L+ +
Sbjct: 302 LKKLVLNANSFDQLCQINA-ASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSD 360
Query: 304 LNGSYPDF----LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQL 359
+ S D L + HL+YL+LS+N+ +G + P+LE+L
Sbjct: 361 IEAS--DCCNLQLKNLRHLQYLNLSYNEPLG-LEDQAFKECPQLELL------------- 404
Query: 360 PKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLL 419
D++ + K PH+ L L +++S + + + +++L L
Sbjct: 405 -----------DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHL 453
Query: 420 DLSRNYF-SGGLSQS-VVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSG 477
+L N F G +S++ ++ SLE+L LS+ N + L + HL +N+ +G
Sbjct: 454 NLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
Query: 478 KIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE 525
D L L L++++N + PH + S + I+++S N L+
Sbjct: 514 DSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQ-SIINLSHNPLD 559
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 138/336 (41%), Gaps = 46/336 (13%)
Query: 98 LNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYF 157
+N F L+ S F +Q LDL+ + + LK LVL N F
Sbjct: 258 INLQKHRFSDLSSSTFRCFTRVQELDLTAAHLN-----GLPSGIEGMNSLKKLVLNANSF 312
Query: 158 DDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITC---- 213
D + PSL L + N + + + +L+NL +++L + I + C
Sbjct: 313 DQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEAS--DCCNLQ 370
Query: 214 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 273
LKNL L+ L++S N+ G LE LD++ + P S N
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQN-------- 422
Query: 274 LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGN-- 331
LH+ L VL L+ C L+ S L L++L+L N
Sbjct: 423 -------LHL----------LRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSI 465
Query: 332 FPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF--LHHLDISCNNFRGKLPHNMGVIL 389
T LL+ LE+L+L + + I Q +A H ++HLD+S N+ G +M +
Sbjct: 466 SKTNLLQMVGSLEILILSSCNLLSIDQ--QAFHGLRNVNHLDLSHNSLTGD---SMDALS 520
Query: 390 Q-KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRN 424
K +Y++++ N P+ + + S+++LS N
Sbjct: 521 HLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 10/178 (5%)
Query: 440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS--TSLQVLDISNN 497
S L+ + N F F L RL+ L + N K L++ +SL+ LD+S N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 498 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN 557
L+ H ++ + +L++S N L G+V L ++++LD+ NR+ +
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTH 471
Query: 558 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP------HQINEHSNL 609
L +++ L++ N L + G R L + L DN + P IN+HS +
Sbjct: 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGV 529
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 29/186 (15%)
Query: 394 YMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF-SLELLDLSNNNFE 452
+++ ++N F ++ +K L L L RN +++T SLE LD+S N+
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 453 GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS 512
H Y + + S+ VL++S+NML+G +
Sbjct: 417 S-------------HAYDRTCAW----------AESILVLNLSSNMLTGSV---FRCLPP 450
Query: 513 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSLNLSSVEHLSLQKNAL 571
++++L + N + +P + +L+ L+ L+++ N+L S P L+S++++ L N
Sbjct: 451 KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
Query: 572 NGLIPG 577
+ PG
Sbjct: 510 DCTCPG 515
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 27/161 (16%)
Query: 122 LDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNT--LPSLCTLILHWN 179
L+ + N+FT DS + +LK+L+ L+L N + L T + SL TL + N
Sbjct: 358 LNFTQNVFT-DS---VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 180 RIEGSQTNQGICELKNLFEMNLERNFIGSPLITCL------------------KNLTRLK 221
+ ++ +++ +NL N + + CL K++T L+
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQ 473
Query: 222 IL---DISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 259
L +++SNQL V LTSL+Y+ L N ++ P
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 512 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL---NLSSVEHLSLQK 568
S L+ ++N +V + L+RL+ L + N L +L N+SS+E L +
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 569 NALNGLIPGELFRSCK----LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP 624
N+LN R+C ++ LNL N +G + + ++ L L N + IP
Sbjct: 413 NSLNS---HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMS-IP 466
Query: 625 DQLCQLQKLAMMDLSRNKFSGSIP 648
+ LQ L ++++ N+ S+P
Sbjct: 467 KDVTHLQALQELNVASNQLK-SVP 489
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 146/324 (45%), Gaps = 53/324 (16%)
Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
L +R+ G ++ G+ L NL ++N N + IT LKNLT+L + +++NQ+ P
Sbjct: 50 LQADRL-GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP 106
Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 295
++NLT+L L L +N + PL +L N ++LE LS+ N + + L + Q +
Sbjct: 107 --LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS-NTISDISALSGLTSLQQL 160
Query: 296 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG 355
G +L L + L+ LD+S NK+ L N LE L+ NN S
Sbjct: 161 SFGNQVTDLKP-----LANLTTLERLDISSNKVSDISVLAKLTN---LESLIATNNQISD 212
Query: 356 ILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI--LQKLMYMDISKNCFEGNIPYSAGE 412
I L L +LD +S N G ++G + L L +D++ N P S
Sbjct: 213 ITPL-----GILTNLDELSLN---GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG-- 262
Query: 413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG----------QFFSEYMN- 461
+ +L+ L L N S + S + G +L L+L+ N E + + Y N
Sbjct: 263 LTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 319
Query: 462 ---------LTRLRHLYFENNNFS 476
LT+L+ L+F NN S
Sbjct: 320 ISDISPVSSLTKLQRLFFANNKVS 343
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 85/191 (44%), Gaps = 39/191 (20%)
Query: 99 NYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFD 158
N D PL N++ L+ LD+S N KV+ L L L+ L+ +N
Sbjct: 164 NQVTDLKPLANLT------TLERLDISSN------KVSDISVLAKLTNLESLIATNNQIS 211
Query: 159 DSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIG--SPL------ 210
D + L L +L L L+ N+++ T + L NL +++L N I +PL
Sbjct: 212 D--ITPLGILTNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNLAPLSGLTKL 266
Query: 211 ------------ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 258
I+ L LT L L+++ NQL P ISNL +L YL L NN +
Sbjct: 267 TELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 324
Query: 259 PLSSLANHSKL 269
P+SSL +L
Sbjct: 325 PVSSLTKLQRL 335
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 148/330 (44%), Gaps = 65/330 (19%)
Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
L +R+ G ++ G+ L NL ++N N + IT LKNLT+L + +++NQ+ P
Sbjct: 46 LQADRL-GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP 102
Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 295
++NLT+L L L +N + PL +L N ++LE LS+ NT+ S +
Sbjct: 103 --LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS--NTI----------SDIS 145
Query: 296 VL-GLT---KCNLNGSYPDF--LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLK 349
L GLT + N D L + L+ LD+S NK+ L N LE L+
Sbjct: 146 ALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN---LESLIAT 202
Query: 350 NNSFSGILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI--LQKLMYMDISKNCFEGNI 406
NN S I L L +LD +S N G ++G + L L +D++ N
Sbjct: 203 NNQISDITPL-----GILTNLDELSLN---GNQLKDIGTLASLTNLTDLDLANNQISNLA 254
Query: 407 PYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG----------QFF 456
P S + +L+ L L N S + S + G +L L+L+ N E +
Sbjct: 255 PLSG--LTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 309
Query: 457 SEYMN----------LTRLRHLYFENNNFS 476
+ Y N LT+L+ L+F NN S
Sbjct: 310 TLYFNNISDISPVSSLTKLQRLFFSNNKVS 339
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 89/197 (45%), Gaps = 42/197 (21%)
Query: 99 NYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFD 158
N D PL N++ L+ LD+S N KV+ L L L+ L+ +N
Sbjct: 160 NQVTDLKPLANLT------TLERLDISSN------KVSDISVLAKLTNLESLIATNNQIS 207
Query: 159 DSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIG--SPL------ 210
D + L L +L L L+ N+++ T + L NL +++L N I +PL
Sbjct: 208 D--ITPLGILTNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNLAPLSGLTKL 262
Query: 211 ------------ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 258
I+ L LT L L+++ NQL P ISNL +L YL L NN +
Sbjct: 263 TELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 320
Query: 259 PLSSLANHSKLEGLLLS 275
P+SSL +KL+ L S
Sbjct: 321 PVSSL---TKLQRLFFS 334
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 146/324 (45%), Gaps = 53/324 (16%)
Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
L +R+ G ++ G+ L NL ++N N + IT LKNLT+L + +++NQ+ P
Sbjct: 51 LQADRL-GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP 107
Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 295
++NLT+L L L +N + PL +L N ++LE LS+ N + + L + Q +
Sbjct: 108 --LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS-NTISDISALSGLTSLQQL 161
Query: 296 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG 355
G +L L + L+ LD+S NK+ L N LE L+ NN S
Sbjct: 162 SFGNQVTDLKP-----LANLTTLERLDISSNKVSDISVLAKLTN---LESLIATNNQISD 213
Query: 356 ILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI--LQKLMYMDISKNCFEGNIPYSAGE 412
I L L +LD +S N G ++G + L L +D++ N P S
Sbjct: 214 ITPL-----GILTNLDELSLN---GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG-- 263
Query: 413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG----------QFFSEYMN- 461
+ +L+ L L N S + S + G +L L+L+ N E + + Y N
Sbjct: 264 LTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 320
Query: 462 ---------LTRLRHLYFENNNFS 476
LT+L+ L+F NN S
Sbjct: 321 ISDISPVSSLTKLQRLFFYNNKVS 344
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 85/191 (44%), Gaps = 39/191 (20%)
Query: 99 NYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFD 158
N D PL N++ L+ LD+S N KV+ L L L+ L+ +N
Sbjct: 165 NQVTDLKPLANLT------TLERLDISSN------KVSDISVLAKLTNLESLIATNNQIS 212
Query: 159 DSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIG--SPL------ 210
D + L L +L L L+ N+++ T + L NL +++L N I +PL
Sbjct: 213 D--ITPLGILTNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNLAPLSGLTKL 267
Query: 211 ------------ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 258
I+ L LT L L+++ NQL P ISNL +L YL L NN +
Sbjct: 268 TELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325
Query: 259 PLSSLANHSKL 269
P+SSL +L
Sbjct: 326 PVSSLTKLQRL 336
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 148/330 (44%), Gaps = 65/330 (19%)
Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
L +R+ G ++ G+ L NL ++N N + IT LKNLT+L + +++NQ+ P
Sbjct: 46 LQADRL-GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP 102
Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 295
++NLT+L L L +N + PL +L N ++LE LS+ NT+ S +
Sbjct: 103 --LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS--NTI----------SDIS 145
Query: 296 VL-GLT---KCNLNGSYPDF--LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLK 349
L GLT + N D L + L+ LD+S NK+ L N LE L+
Sbjct: 146 ALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN---LESLIAT 202
Query: 350 NNSFSGILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI--LQKLMYMDISKNCFEGNI 406
NN S I L L +LD +S N G ++G + L L +D++ N
Sbjct: 203 NNQISDITPL-----GILTNLDELSLN---GNQLKDIGTLASLTNLTDLDLANNQISNLA 254
Query: 407 PYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG----------QFF 456
P S + +L+ L L N S + S + G +L L+L+ N E +
Sbjct: 255 PLSG--LTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 309
Query: 457 SEYMN----------LTRLRHLYFENNNFS 476
+ Y N LT+L+ L+F NN S
Sbjct: 310 TLYFNNISDISPVSSLTKLQRLFFYNNKVS 339
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 85/191 (44%), Gaps = 39/191 (20%)
Query: 99 NYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFD 158
N D PL N++ L+ LD+S N KV+ L L L+ L+ +N
Sbjct: 160 NQVTDLKPLANLT------TLERLDISSN------KVSDISVLAKLTNLESLIATNNQIS 207
Query: 159 DSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIG--SPL------ 210
D + L L +L L L+ N+++ T + L NL +++L N I +PL
Sbjct: 208 D--ITPLGILTNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNLAPLSGLTKL 262
Query: 211 ------------ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 258
I+ L LT L L+++ NQL P ISNL +L YL L NN +
Sbjct: 263 TELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 320
Query: 259 PLSSLANHSKL 269
P+SSL +L
Sbjct: 321 PVSSLTKLQRL 331
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 118/506 (23%), Positives = 189/506 (37%), Gaps = 88/506 (17%)
Query: 131 YDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSYLNTLPSLCTLILHWNRIEGSQTN 187
Y S++ D L SL +L+IL++ HN Y D S+F + L L L N++ +
Sbjct: 32 YISELWTSDIL-SLSKLRILIISHNRIQYLDISVFKFNQELE---YLDLSHNKLVKISCH 87
Query: 188 QGICELKNLFEMNLERN-FIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEY 246
+ NL ++L N F P+ N+++LK L +S+ L S I++L +
Sbjct: 88 PTV----NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143
Query: 247 LDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNG 306
L + + L + + ++ N H + + T + L KC L
Sbjct: 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203
Query: 307 SYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKN-----NSFSGILQLPK 361
+ + L ++ L+ NPKL L L N NSF ILQL
Sbjct: 204 NKCSYFL-------------SILAK-----LQTNPKLSNLTLNNIETTWNSFIRILQL-- 243
Query: 362 AKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDL 421
H + + IS +G+L + YS +K LS+ +
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFR--------------------DFDYSGTSLKALSIHQV 283
Query: 422 SRNYFSGGLSQSVVTGCFS-------------------------LELLDLSNNNFEGQFF 456
+ F G QS + FS LD SNN F
Sbjct: 284 VSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341
Query: 457 SEYMNLTRLRHLYFENNNFS--GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSEL 514
+LT L L + N KI + SLQ LDIS N +S +++ L
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401
Query: 515 EILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 574
L+MS N L + L R+++LD+ N++ + L +++ L++ N L +
Sbjct: 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSV 459
Query: 575 IPGELFRSCKLVTLNLRDNTFSGRIP 600
G R L + L N + P
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 116 LEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLI 175
++ LQ LD+S N +YD K +SL L + N D+IF L P + L
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN---MSSNILTDTIFRCLP--PRIKVLD 427
Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
LH N+I+ + + +L+ L E+N+ N + S LT L+ + + +N + S P
Sbjct: 428 LHSNKIKS--IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Query: 236 SV 237
+
Sbjct: 486 RI 487
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 502 HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLS-S 560
H+P + S + IL++S+N++ + +L +LRIL IS NR+ S +
Sbjct: 14 HVP---KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE 70
Query: 561 VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG-RIPHQINEHSNLRFLLLGGNHL 619
+E+L L N L+ + L L+L N F I + S L+FL L HL
Sbjct: 71 LEYLDLSHNK---LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127
Query: 620 Q 620
+
Sbjct: 128 E 128
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
Query: 118 ELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILH 177
EL S+D I +S + + ++ L ++ L LG N D S L L +L LIL
Sbjct: 39 ELNSID---QIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILT 93
Query: 178 WNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSV 237
N+++ S N +L NL E+ L N + S LT L L+++ NQL V
Sbjct: 94 GNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV 152
Query: 238 ISNLTSLEYLDLSHNNF----EGMF 258
LT+L LDLS+N EG+F
Sbjct: 153 FDKLTNLTELDLSYNQLQSLPEGVF 177
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 136 AAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICE-LK 194
+D L +LK+L ++ D +F + L +L L L N+++ +G+ + L
Sbjct: 103 GVFDKLTNLKELVLVENQLQSLPDGVF---DKLTNLTYLNLAHNQLQS--LPKGVFDKLT 157
Query: 195 NLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF 254
NL E++L N + S LT+LK L + NQL V LTSL+Y+ L N +
Sbjct: 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217
Query: 255 EGMFP 259
+ P
Sbjct: 218 DCTCP 222
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 146/324 (45%), Gaps = 52/324 (16%)
Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
L +R+ G ++ G+ L NL ++N N + IT LKNLT+L + +++NQ+ P
Sbjct: 46 LQADRL-GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP 102
Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 295
++NLT+L L L +N + PL +L N ++LE LS+ N + + L + L
Sbjct: 103 --LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS-NTISDISALSGL--TSLQ 154
Query: 296 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG 355
L + + P L + L+ LD+S NK+ L N LE L+ NN S
Sbjct: 155 QLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTN---LESLIATNNQISD 209
Query: 356 ILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI--LQKLMYMDISKNCFEGNIPYSAGE 412
I L L +LD +S N G ++G + L L +D++ N P S
Sbjct: 210 ITPL-----GILTNLDELSLN---GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG-- 259
Query: 413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG----------QFFSEYMN- 461
+ +L+ L L N S + S + G +L L+L+ N E + + Y N
Sbjct: 260 LTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 316
Query: 462 ---------LTRLRHLYFENNNFS 476
LT+L+ L+F NN S
Sbjct: 317 ISDISPVSSLTKLQRLFFSNNKVS 340
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 89/197 (45%), Gaps = 42/197 (21%)
Query: 99 NYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFD 158
N D PL N++ L+ LD+S N KV+ L L L+ L+ +N
Sbjct: 161 NQVTDLKPLANLT------TLERLDISSN------KVSDISVLAKLTNLESLIATNNQIS 208
Query: 159 DSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIG--SPL------ 210
D + L L +L L L+ N+++ T + L NL +++L N I +PL
Sbjct: 209 D--ITPLGILTNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNLAPLSGLTKL 263
Query: 211 ------------ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 258
I+ L LT L L+++ NQL P ISNL +L YL L NN +
Sbjct: 264 TELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 321
Query: 259 PLSSLANHSKLEGLLLS 275
P+SSL +KL+ L S
Sbjct: 322 PVSSL---TKLQRLFFS 335
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 146/324 (45%), Gaps = 52/324 (16%)
Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
L +R+ G ++ G+ L NL ++N N + IT LKNLT+L + +++NQ+ P
Sbjct: 46 LQADRL-GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP 102
Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 295
++NLT+L L L +N + PL +L N ++LE LS+ N + + L + L
Sbjct: 103 --LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS-NTISDISALSGL--TSLQ 154
Query: 296 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG 355
L + + P L + L+ LD+S NK+ L N LE L+ NN S
Sbjct: 155 QLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTN---LESLIATNNQISD 209
Query: 356 ILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI--LQKLMYMDISKNCFEGNIPYSAGE 412
I L L +LD +S N G ++G + L L +D++ N P S
Sbjct: 210 ITPL-----GILTNLDELSLN---GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG-- 259
Query: 413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG----------QFFSEYMN- 461
+ +L+ L L N S + S + G +L L+L+ N E + + Y N
Sbjct: 260 LTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 316
Query: 462 ---------LTRLRHLYFENNNFS 476
LT+L+ L+F NN S
Sbjct: 317 ISDISPVSSLTKLQRLFFYNNKVS 340
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 85/191 (44%), Gaps = 39/191 (20%)
Query: 99 NYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFD 158
N D PL N++ L+ LD+S N KV+ L L L+ L+ +N
Sbjct: 161 NQVTDLKPLANLT------TLERLDISSN------KVSDISVLAKLTNLESLIATNNQIS 208
Query: 159 DSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIG--SPL------ 210
D + L L +L L L+ N+++ T + L NL +++L N I +PL
Sbjct: 209 D--ITPLGILTNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNLAPLSGLTKL 263
Query: 211 ------------ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 258
I+ L LT L L+++ NQL P ISNL +L YL L NN +
Sbjct: 264 TELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 321
Query: 259 PLSSLANHSKL 269
P+SSL +L
Sbjct: 322 PVSSLTKLQRL 332
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 146/324 (45%), Gaps = 52/324 (16%)
Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
L +R+ G ++ G+ L NL ++N N + IT LKNLT+L + +++NQ+ P
Sbjct: 46 LQADRL-GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP 102
Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 295
++NLT+L L L +N + PL +L N ++LE LS+ N + + L + L
Sbjct: 103 --LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS-NTISDISALSGL--TSLQ 154
Query: 296 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG 355
L + + P L + L+ LD+S NK+ L N LE L+ NN S
Sbjct: 155 QLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTN---LESLIATNNQISD 209
Query: 356 ILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI--LQKLMYMDISKNCFEGNIPYSAGE 412
I L L +LD +S N G ++G + L L +D++ N P S
Sbjct: 210 ITPL-----GILTNLDELSLN---GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG-- 259
Query: 413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG----------QFFSEYMN- 461
+ +L+ L L N S + S + G +L L+L+ N E + + Y N
Sbjct: 260 LTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 316
Query: 462 ---------LTRLRHLYFENNNFS 476
LT+L+ L+F NN S
Sbjct: 317 ISDISPVSSLTKLQRLFFYNNKVS 340
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 85/191 (44%), Gaps = 39/191 (20%)
Query: 99 NYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFD 158
N D PL N++ L+ LD+S N KV+ L L L+ L+ +N
Sbjct: 161 NQVTDLKPLANLT------TLERLDISSN------KVSDISVLAKLTNLESLIATNNQIS 208
Query: 159 DSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIG--SPL------ 210
D + L L +L L L+ N+++ T + L NL +++L N I +PL
Sbjct: 209 D--ITPLGILTNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNLAPLSGLTKL 263
Query: 211 ------------ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 258
I+ L LT L L+++ NQL P ISNL +L YL L NN +
Sbjct: 264 TELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 321
Query: 259 PLSSLANHSKL 269
P+SSL +L
Sbjct: 322 PVSSLTKLQRL 332
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 125/313 (39%), Gaps = 36/313 (11%)
Query: 210 LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL 269
L CL N++ ++ ++ ++ S ++L+L + F G FP L + +L
Sbjct: 301 LFNCLTNVSSFSLVSVTIERVKD-----FSYNFGWQHLELVNCKF-GQFPTLKLKSLKRL 354
Query: 270 EGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLV 329
T N + +E LP+ + + L + G LKYLDLS N ++
Sbjct: 355 TF----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI 410
Query: 330 GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVIL 389
+++F G+ QL HLD +N + ++ + L
Sbjct: 411 T------------------MSSNFLGLEQL--------EHLDFQHSNLKQMSEFSVFLSL 444
Query: 390 QKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 449
+ L+Y+DIS + L +L ++ N F + T +L LDLS
Sbjct: 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 504
Query: 450 NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 509
E + + +L+ L+ L +NNF SLQVLD S N + + +
Sbjct: 505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564
Query: 510 FSSELEILSMSKN 522
F S L L++++N
Sbjct: 565 FPSSLAFLNLTQN 577
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 29/153 (18%)
Query: 113 FHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLC 172
F LE+L+ LD + S+ + + SLR+L L I H + + N L SL
Sbjct: 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI---SHTHTRVAFNGIFNGLSSLE 472
Query: 173 TLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNG 232
L + N + + NF+ + T L+NLT LD+S QL
Sbjct: 473 VLKMAGN--------------------SFQENFLPD-IFTELRNLT---FLDLSQCQLEQ 508
Query: 233 SLPSVISNLTSLEYLDLSHNNFEGM--FPLSSL 263
P+ ++L+SL+ L++SHNNF + FP L
Sbjct: 509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 541
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
Query: 514 LEILSMSKNHL--EGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL 571
LE L +S+N L +G L+ LD+S N + ++ L L +EHL Q + L
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 432
Query: 572 NGLIPGELFRSCK-LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ-GPIPDQLCQ 629
+ +F S + L+ L++ N S+L L + GN Q +PD +
Sbjct: 433 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 492
Query: 630 LQKLAMMDLSRNKFSGSIPPCFANVLSWRV 659
L+ L +DLS+ + P F ++ S +V
Sbjct: 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 108/259 (41%), Gaps = 21/259 (8%)
Query: 217 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN--NFEGMFPLSSLANHSKLEGLLL 274
L LK L +SN+ + V +L SLE+LDLS N +F+G S S L+ L L
Sbjct: 348 LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTIS-LKYLDL 404
Query: 275 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLVGNFP 333
S N + + N+L QL L NL S L +L YLD+SH F
Sbjct: 405 SF--NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF- 461
Query: 334 TWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF--LHHLDISCNNFRGKLPHNMGVILQK 391
+ LEVL + NSF LP + L LD+S P L
Sbjct: 462 NGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-LSS 519
Query: 392 LMYMDISKNCFEG--NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 449
L +++S N F PY + L +LD S N+ Q + SL L+L+ N
Sbjct: 520 LQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577
Query: 450 NF----EGQFFSEYMNLTR 464
+F E Q F +++ R
Sbjct: 578 DFACTCEHQSFLQWIKDQR 596
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 59/147 (40%), Gaps = 30/147 (20%)
Query: 113 FHPLEELQSLDLS-VNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSL 171
F ELQ LDLS I T + AY +SL L L+L N + L SL
Sbjct: 72 FFSFPELQVLDLSRCEIQTIED--GAY---QSLSHLSTLILTGNPIQSLALGAFSGLSSL 126
Query: 172 CTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLN 231
L+ + S N I LK L E+N+ N I S
Sbjct: 127 QKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQS----------------------- 162
Query: 232 GSLPSVISNLTSLEYLDLSHNNFEGMF 258
LP SNLT+LE+LDLS N + ++
Sbjct: 163 FKLPEYFSNLTNLEHLDLSSNKIQSIY 189
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 105/237 (44%), Gaps = 36/237 (15%)
Query: 368 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRN--Y 425
HL++ F G+ P + L+ L + + N +G +S ++ L LDLSRN
Sbjct: 307 QHLELVNCKF-GQFP---TLKLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLS 360
Query: 426 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGL-L 484
F G SQS G SL+ LDLS N S ++ L +L HL F+++N + + L
Sbjct: 361 FKGCCSQSDF-GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418
Query: 485 SSTSLQVLDIS------------NNMLSGHIPHWMGNFSSE------------LEILSMS 520
S +L LDIS N + S + GN E L L +S
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 521 KNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSLNLSSVEHLSLQKNALNGLIP 576
+ LE P N+L L++L+++ N+L S P L+S++ + L N + P
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Query: 113 FHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLC 172
F LE+L+ LD + S+ + + SLR+L L I H + + N L SL
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI---SHTHTRVAFNGIFNGLSSLE 448
Query: 173 TLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNG 232
L + N + + EL+NL ++L + + T +L+ L++L+++SNQL
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508
Query: 233 SLPSVISNLTSLEYLDLSHNNFEGMFP 259
+ LTSL+ + L N ++ P
Sbjct: 509 VPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
Query: 514 LEILSMSKNHL--EGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL 571
LE L +S+N L +G L+ LD+S N + ++ L L +EHL Q + L
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 572 NGLIPGELFRSCK-LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ-GPIPDQLCQ 629
+ +F S + L+ L++ N S+L L + GN Q +PD +
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468
Query: 630 LQKLAMMDLSRNKFSGSIPPCFANVLSWRV 659
L+ L +DLS+ + P F ++ S +V
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 59/147 (40%), Gaps = 30/147 (20%)
Query: 113 FHPLEELQSLDLS-VNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSL 171
F ELQ LDLS I T + AY +SL L L+L N + L SL
Sbjct: 48 FFSFPELQVLDLSRCEIQTIED--GAY---QSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Query: 172 CTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLN 231
L+ + S N I LK L E+N+ N I S
Sbjct: 103 QKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQS----------------------- 138
Query: 232 GSLPSVISNLTSLEYLDLSHNNFEGMF 258
LP SNLT+LE+LDLS N + ++
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIY 165
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 125/313 (39%), Gaps = 36/313 (11%)
Query: 210 LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL 269
L CL N++ ++ ++ ++ S ++L+L + F G FP L + +L
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKD-----FSYNFGWQHLELVNCKF-GQFPTLKLKSLKRL 330
Query: 270 EGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLV 329
T N + +E LP+ + + L + G LKYLDLS N ++
Sbjct: 331 TF----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 330 GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVIL 389
+++F G+ QL HLD +N + ++ + L
Sbjct: 387 T------------------MSSNFLGLEQL--------EHLDFQHSNLKQMSEFSVFLSL 420
Query: 390 QKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 449
+ L+Y+DIS + L +L ++ N F + T +L LDLS
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 450 NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 509
E + + +L+ L+ L +NNF SLQVLD S N + + +
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540
Query: 510 FSSELEILSMSKN 522
F S L L++++N
Sbjct: 541 FPSSLAFLNLTQN 553
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 29/153 (18%)
Query: 113 FHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLC 172
F LE+L+ LD + S+ + + SLR+L L I H + + N L SL
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI---SHTHTRVAFNGIFNGLSSLE 448
Query: 173 TLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNG 232
L + N + + NF+ + T L+NLT LD+S QL
Sbjct: 449 VLKMAGN--------------------SFQENFLPD-IFTELRNLT---FLDLSQCQLEQ 484
Query: 233 SLPSVISNLTSLEYLDLSHNNFEGM--FPLSSL 263
P+ ++L+SL+ L++SHNNF + FP L
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 101/242 (41%), Gaps = 17/242 (7%)
Query: 217 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN--NFEGMFPLSSLANHSKLEGLLL 274
L LK L +SN+ + V +L SLE+LDLS N +F+G S S L+ L L
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDL 380
Query: 275 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLVGNFP 333
S N + + N+L QL L NL S L +L YLD+SH F
Sbjct: 381 SF--NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF- 437
Query: 334 TWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF--LHHLDISCNNFRGKLPHNMGVILQK 391
+ LEVL + NSF LP + L LD+S P L
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-LSS 495
Query: 392 LMYMDISKNCFEG--NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 449
L +++S N F PY + L +LD S N+ Q + SL L+L+ N
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Query: 450 NF 451
+F
Sbjct: 554 DF 555
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 59/147 (40%), Gaps = 30/147 (20%)
Query: 113 FHPLEELQSLDLS-VNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSL 171
F ELQ LDLS I T + AY +SL L L+L N + L SL
Sbjct: 48 FFSFPELQVLDLSRCEIQTIED--GAY---QSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Query: 172 CTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLN 231
L+ + S N I LK L E+N+ N I S
Sbjct: 103 QKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQS----------------------- 138
Query: 232 GSLPSVISNLTSLEYLDLSHNNFEGMF 258
LP SNLT+LE+LDLS N + ++
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 115/485 (23%), Positives = 190/485 (39%), Gaps = 83/485 (17%)
Query: 219 RLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE----GMFP-LSSLANHSKLEGLL 273
L++LD+S ++ +L+ L L L+ N + G F LSSL +E L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 274 LSTRNNTL-HVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNF 332
S N + H+KT L + ++ P++ + +L++LDLS NK+ +
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSF-------KLPEYFSNLTNLEHLDLSSNKIQSIY 165
Query: 333 PTWL--LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ 390
T L L P L + L + + +Q K LH L + NNF + M +Q
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR-NNFDSL--NVMKTCIQ 222
Query: 391 KLMYMDI-----------------SKNCFEGNIPYSAGEMKELSLLDLSR-------NYF 426
L +++ K+ EG + E + L+ LD N
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR-LAYLDYYLDDIIDLFNCL 281
Query: 427 SGGLSQSVVTGC----------FSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS 476
+ S S+V+ F + L+L N F GQF + L L+ L F +N
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF-GQF--PTLKLKSLKRLTFTSNKGG 338
Query: 477 GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLE 536
+ + SL+ LD+S N LS +F +
Sbjct: 339 NAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGT-----------------------T 373
Query: 537 RLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCK-LVTLNLRDNTF 595
L+ LD+S N + ++ L L +EHL Q + L + +F S + L+ L++
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 596 SGRIPHQINEHSNLRFLLLGGNHLQ-GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV 654
N S+L L + GN Q +PD +L+ L +DLS+ + P F ++
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 655 LSWRV 659
S +V
Sbjct: 494 SSLQV 498
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 118 ELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILH 177
EL S+D I +S + + ++ L ++ L LG N D S L L +L LIL
Sbjct: 39 ELNSID---QIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILT 93
Query: 178 WNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSV 237
N+++ S N +L NL E+ L N + S LT L L + NQL V
Sbjct: 94 GNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGV 152
Query: 238 ISNLTSLEYLDLSHNNF----EGMF 258
LT+L LDL +N EG+F
Sbjct: 153 FDKLTNLTRLDLDNNQLQSLPEGVF 177
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 136 AAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICE-LK 194
+D L +LK+L ++ D +F + L +L L L+ N+++ +G+ + L
Sbjct: 103 GVFDKLTNLKELVLVENQLQSLPDGVF---DKLTNLTYLYLYHNQLQS--LPKGVFDKLT 157
Query: 195 NLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF 254
NL ++L+ N + S LT+LK L ++ NQL V LTSL ++ L +N +
Sbjct: 158 NLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPW 217
Query: 255 E 255
+
Sbjct: 218 D 218
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 404 GNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFS----LELLDLSNNNFEGQFFSEY 459
GN + +KEL+ +L+ +G QS+ G F L+ L L N + +
Sbjct: 72 GNKLHDISALKELT--NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129
Query: 460 MNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSM 519
LT L +LY +N K T+L LD+ NN L +P + + ++L+ LS+
Sbjct: 130 DKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSL 188
Query: 520 SKNHLEGNVP 529
+ N L+ +VP
Sbjct: 189 NDNQLK-SVP 197
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 133/337 (39%), Gaps = 48/337 (14%)
Query: 98 LNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYF 157
LN F ++ + F +LQ LDL+ T+ + + ++ L LK LVL N+F
Sbjct: 256 LNLQEHRFSDISSTTFQCFTQLQELDLTA---THLKGLPS--GMKGLNLLKKLVLSVNHF 310
Query: 158 DDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICE-LKNLFEMNLERNFIGSPLITCL-- 214
D PSL L + N ++ G E L NL ++L N I + L
Sbjct: 311 DQLCQISAANFPSLTHLYIRGN-VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQL 369
Query: 215 KNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLL 274
KNL+ L+ L++S N+ G LE LDL+ P S N
Sbjct: 370 KNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQN--------- 420
Query: 275 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGN--F 332
LH L VL LT C L+ S L L++L+L N
Sbjct: 421 ------LHF----------LQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTIT 464
Query: 333 PTWLLRNNPKLEVLLLKNNSFSGILQ-----LPKAKHDFLHHLDISCNNFRGKLPHNMGV 387
T LL+ LEVL+L + I Q L K H L H ++C++ L H G+
Sbjct: 465 KTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSI-DSLSHLKGI 523
Query: 388 ILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRN 424
Y++++ N P + + S ++LS N
Sbjct: 524 ------YLNLAANSINIISPRLLPILSQQSTINLSHN 554
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 125/306 (40%), Gaps = 58/306 (18%)
Query: 318 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 377
L+ LDL+ L G P+ + N L+ L+L N F + Q+ A L HL I N
Sbjct: 277 LQELDLTATHLKG-LPSGMKGLN-LLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN-- 332
Query: 378 RGKLPHNMGVI--LQKLMYMDISKNCFEGN--IPYSAGEMKELSLLDLSRNYFSGGLSQS 433
KL +G + L L +D+S N E + + L L+LS N GL
Sbjct: 333 VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNE-PLGLQSQ 391
Query: 434 VVTGCFSLELLDLS---------NNNFEGQFFSEYMNLTR----------------LRHL 468
C LELLDL+ + F+ F + +NLT LRHL
Sbjct: 392 AFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHL 451
Query: 469 YFENNNFSGKIKDGLLSSTSL-QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN 527
+ N+F +DG ++ T+L Q + LE+L +S L
Sbjct: 452 NLKGNHF----QDGTITKTNLLQTV-------------------GSLEVLILSSCGLLSI 488
Query: 528 VPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVT 587
++L ++ +D+S N L+ SL+ +L+L N++N + P L + T
Sbjct: 489 DQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQST 548
Query: 588 LNLRDN 593
+NL N
Sbjct: 549 INLSHN 554
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 173/658 (26%), Positives = 268/658 (40%), Gaps = 114/658 (17%)
Query: 94 NTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLG 153
N T LN ++ L + F +L SLD+ N SK+ + + L LK+L L
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI---SKLEP-ELCQKLPMLKVLNLQ 81
Query: 154 HN---YFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPL 210
HN D F++ +L L L N I+ + N + + KNL ++L N + S
Sbjct: 82 HNELSQLSDKTFAFCT---NLTELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSSTK 137
Query: 211 ITCLKNLTRLKILDISSNQ---LNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHS 267
+ L L+ L +S+N+ L + +N +SL+ L+LS N + P
Sbjct: 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSP-GCFHAIG 195
Query: 268 KLEGLLLSTRN--NTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFL-LHQYHLKYLDL 323
+L GL L+ +L K L + + L L+ L+ S FL L +L LDL
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255
Query: 324 SHNKL--VGNFP-TWLLRNNPKLEVLLLKNN-----------------------SFS--- 354
S+N L VGN WL P+LE L+ N SF+
Sbjct: 256 SYNNLNVVGNDSFAWL----PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311
Query: 355 -GILQLPKAKHDF-------LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG-- 404
+ LPK DF L HL++ N+ G + NM L L Y+ +S N F
Sbjct: 312 ISLASLPKID-DFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLS-NSFTSLR 368
Query: 405 ---NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFS--EY 459
N + + L +L+L++N S + + LE+LDL N GQ + E+
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEI-GQELTGQEW 426
Query: 460 MNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS--ELEIL 517
L + +Y N + ++ SLQ L + L ++ F L IL
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK-NVDSSPSPFQPLRNLTIL 485
Query: 518 SMSKNHLEGNVPVQLNNLERLRILDISENRLS---------GPIASSLNLSSVEHLSLQK 568
+S N++ L LE+L ILD+ N L+ GPI LS + L+L+
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545
Query: 569 NALNGLIPGELFR---SCKLVTLNLRD-NTFSGRIPHQINEHSNLRFLLLGGNHLQ---- 620
N + IP E+F+ K++ L L + NT + N +L+ L L N +
Sbjct: 546 NGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASV---FNNQVSLKSLNLQKNLITSVEK 601
Query: 621 ---GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPEL 675
GP + L +D+ N F C ++W V + +N + N PEL
Sbjct: 602 KVFGP------AFRNLTELDMRFNPFD-----CTCESIAWFV---NWINETHTNIPEL 645
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 183 GSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLT 242
G T +G+ L NL + L+ N I + LKNLT++ L++S N L S I+ L
Sbjct: 52 GVTTIEGVQYLNNLIGLELKDNQITD--LAPLKNLTKITELELSGNPLKNV--SAIAGLQ 107
Query: 243 SLEYLDLSHNNFEGMFPLSSLAN 265
S++ LDL+ + PL+ L+N
Sbjct: 108 SIKTLDLTSTQITDVTPLAGLSN 130
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 30/207 (14%)
Query: 318 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 377
LKYLDLS N ++ +++F G+ QL HLD +N
Sbjct: 80 LKYLDLSFNGVIT------------------MSSNFLGLEQL--------EHLDFQHSNL 113
Query: 378 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA--GEMKELSLLDLSRNYFSGGLSQSVV 435
+ ++ + L+ L+Y+DIS + ++ + L +L ++ N F +
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHT--HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171
Query: 436 TGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS 495
T +L LDLS E + + +L+ L+ L +NNF SLQVLD S
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231
Query: 496 NNMLSGHIPHWMGNFSSELEILSMSKN 522
N + + +F S L L++++N
Sbjct: 232 LNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 5/172 (2%)
Query: 492 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHL--EGNVPVQLNNLERLRILDISENRLS 549
L++ +N L +PH + + ++L LS+S N L +G L+ LD+S N +
Sbjct: 33 LELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCK-LVTLNLRDNTFSGRIPHQINEHSN 608
++ L L +EHL Q + L + +F S + L+ L++ N S+
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 609 LRFLLLGGNHLQGP-IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV 659
L L + GN Q +PD +L+ L +DLS+ + P F ++ S +V
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 29/153 (18%)
Query: 113 FHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLC 172
F LE+L+ LD + S+ + + SLR+L L I H + + N L SL
Sbjct: 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI---SHTHTRVAFNGIFNGLSSLE 153
Query: 173 TLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNG 232
L + N + + NF+ + T L+NLT LD+S QL
Sbjct: 154 VLKMAGN--------------------SFQENFLPD-IFTELRNLT---FLDLSQCQLEQ 189
Query: 233 SLPSVISNLTSLEYLDLSHNNFEGM--FPLSSL 263
P+ ++L+SL+ L++SHNNF + FP L
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 26/197 (13%)
Query: 218 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 277
T LK LD+S N + ++ S L LE+LD H+N + M S + LS R
Sbjct: 78 TSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFS----------VFLSLR 126
Query: 278 N----NTLHVKTE-------NWLPTSQLIVLGLTKCNLNGSY-PDFLLHQYHLKYLDLSH 325
N + H T N L S L VL + + ++ PD +L +LDLS
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 326 NKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNM 385
+L PT + L+VL + +N+F + P + L LD S N+ +
Sbjct: 185 CQLEQLSPTA-FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243
Query: 386 GVILQKLMYMDISKNCF 402
L ++++++N F
Sbjct: 244 QHFPSSLAFLNLTQNDF 260
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 99/260 (38%), Gaps = 39/260 (15%)
Query: 199 MNLERNFIGSPLITCLKNLTRLKILDISSNQLN--GSLPSVISNLTSLEYLDLSHNNFEG 256
+ LE N + S LT+L L +SSN L+ G TSL+YLDLS F G
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS---FNG 89
Query: 257 MFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQ 315
+ +SS N+L QL L NL S L
Sbjct: 90 VITMSS------------------------NFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125
Query: 316 YHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF--LHHLDIS 373
+L YLD+SH F + LEVL + NSF LP + L LD+S
Sbjct: 126 RNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLS 183
Query: 374 CNNFRGKLPHNMGVILQKLMYMDISKNCFEG--NIPYSAGEMKELSLLDLSRNYFSGGLS 431
P L L +++S N F PY + L +LD S N+
Sbjct: 184 QCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHIMTSKK 240
Query: 432 QSVVTGCFSLELLDLSNNNF 451
Q + SL L+L+ N+F
Sbjct: 241 QELQHFPSSLAFLNLTQNDF 260
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 39/222 (17%)
Query: 311 FLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHL 370
F H L++LDLS N +V + LKN++ G P L L
Sbjct: 355 FSQHLKSLEFLDLSENLMVEEY---------------LKNSACKG--AWPS-----LQTL 392
Query: 371 DISCNNFRG-KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGG 429
+S N+ R + + + L+ L +DIS+N F +P S +++ L+LS S G
Sbjct: 393 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLS----STG 447
Query: 430 LSQSVVTGCF--SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSST 487
+ VV C +LE+LD+SNNN + FS + L RL+ LY N + D L
Sbjct: 448 IR--VVKTCIPQTLEVLDVSNNNLDS--FSLF--LPRLQELYISRNKLK-TLPDASLFPV 500
Query: 488 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP 529
L V+ I++N L +P + + + L+ + + N + + P
Sbjct: 501 -LLVMKIASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 540
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 20/209 (9%)
Query: 440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 499
+++ LDLS N + L+ L +++ + D S SL+ LD+S+N L
Sbjct: 53 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 112
Query: 500 SGHIPHWMGNFSSELEILSMSKNHLE----GNVPVQLNNLERLRILDISE----NRLSGP 551
S W G SS L+ L++ N + ++ L NL+ LRI ++ R+
Sbjct: 113 SSLSSSWFGPLSS-LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 171
Query: 552 IASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRF 611
+SLN ++ LSL+ L + R +TL+L ++ F I I S++R+
Sbjct: 172 GLTSLNELEIKALSLRNYQSQSL---KSIRDIHHLTLHLSESAFLLEIFADI--LSSVRY 226
Query: 612 LLLGGNHLQ----GPIP-DQLCQ-LQKLA 634
L L +L P+P D++ ++KLA
Sbjct: 227 LELRDTNLARFQFSPLPVDEVSSPMKKLA 255
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 175/662 (26%), Positives = 269/662 (40%), Gaps = 122/662 (18%)
Query: 94 NTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLG 153
N T LN ++ L + F +L SLD+ N SK+ + + L LK+L L
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI---SKLEP-ELCQKLPMLKVLNLQ 86
Query: 154 HN---YFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPL 210
HN D F++ +L L L N I+ + N + + KNL ++L N + S
Sbjct: 87 HNELSQLSDKTFAFCT---NLTELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSSTK 142
Query: 211 ITCLKNLTRLKILDISSNQ---LNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHS 267
+ L L+ L +S+N+ L + +N +SL+ L+LS N + P
Sbjct: 143 LGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSP-GCFHAIG 200
Query: 268 KLEGLLLSTRN--NTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFL-LHQYHLKYLDL 323
+L GL L+ +L K L + + L L+ L+ S FL L +L LDL
Sbjct: 201 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 260
Query: 324 SHNKL--VGNFP-TWLLRNNPKLEVLLLKNN-----------------------SFS--- 354
S+N L VGN WL P+LE L+ N SF+
Sbjct: 261 SYNNLNVVGNDSFAWL----PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 316
Query: 355 -GILQLPKAKHDF-------LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG-- 404
+ LPK DF L HL++ N+ G + NM L L Y+ +S N F
Sbjct: 317 ISLASLPKID-DFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLS-NSFTSLR 373
Query: 405 ---NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFS----LELLDLSNNNFEGQFFS 457
N + + L +L+L++N S + + FS LE+LDL N GQ +
Sbjct: 374 TLTNETFVSLAHSPLHILNLTKNKIS-----KIESDAFSWLGHLEVLDLGLNEI-GQELT 427
Query: 458 --EYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS--E 513
E+ L + +Y N + ++ SLQ L + L + F
Sbjct: 428 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN-VDSSPSPFQPLRN 486
Query: 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS---------GPIASSLNLSSVEHL 564
L IL +S N++ L LE+L ILD+ N L+ GPI LS + L
Sbjct: 487 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 546
Query: 565 SLQKNALNGLIPGELFR---SCKLVTLNLRD-NTFSGRIPHQINEHSNLRFLLLGGNHLQ 620
+L+ N + IP E+F+ K++ L L + NT + N +L+ L L N +
Sbjct: 547 NLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASV---FNNQVSLKSLNLQKNLIT 602
Query: 621 -------GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP 673
GP + L +D+ N F C ++W V + +N + N P
Sbjct: 603 SVEKKVFGP------AFRNLTELDMRFNPFD-----CTCESIAWFV---NWINETHTNIP 648
Query: 674 EL 675
EL
Sbjct: 649 EL 650
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 10/180 (5%)
Query: 87 VMQLSLKNTTRLNYPYDWFPL-LNMSLFHPLEELQSLDLSVNIFT-YDSKVAAYDSLRSL 144
V + +K+ T + D + L LN + + L SL S++ FT Y +++ + +
Sbjct: 162 VTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASL-TSLHYFTAYVNQITDITPVANX 220
Query: 145 KQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERN 204
+L L +G+N D S L L L L + N+I + + +LK L N+ N
Sbjct: 221 TRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXL---NVGSN 275
Query: 205 FIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLA 264
I I+ L NL++L L +++NQL VI LT+L L LS N+ + PL+SL+
Sbjct: 276 QISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLASLS 333
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 173/658 (26%), Positives = 268/658 (40%), Gaps = 114/658 (17%)
Query: 94 NTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLG 153
N T LN ++ L + F +L SLD+ N SK+ + + L LK+L L
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI---SKLEP-ELCQKLPMLKVLNLQ 91
Query: 154 HN---YFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPL 210
HN D F++ +L L L N I+ + N + + KNL ++L N + S
Sbjct: 92 HNELSQLSDKTFAFCT---NLTELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSSTK 147
Query: 211 ITCLKNLTRLKILDISSNQ---LNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHS 267
+ L L+ L +S+N+ L + +N +SL+ L+LS N + P
Sbjct: 148 LGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSP-GCFHAIG 205
Query: 268 KLEGLLLSTRN--NTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFL-LHQYHLKYLDL 323
+L GL L+ +L K L + + L L+ L+ S FL L +L LDL
Sbjct: 206 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 265
Query: 324 SHNKL--VGNFP-TWLLRNNPKLEVLLLKNN-----------------------SFS--- 354
S+N L VGN WL P+LE L+ N SF+
Sbjct: 266 SYNNLNVVGNDSFAWL----PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 321
Query: 355 -GILQLPKAKHDF-------LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG-- 404
+ LPK DF L HL++ N+ G + NM L L Y+ +S N F
Sbjct: 322 ISLASLPKID-DFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLS-NSFTSLR 378
Query: 405 ---NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFS--EY 459
N + + L +L+L++N S + + LE+LDL N GQ + E+
Sbjct: 379 TLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEI-GQELTGQEW 436
Query: 460 MNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS--ELEIL 517
L + +Y N + ++ SLQ L + L ++ F L IL
Sbjct: 437 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK-NVDSSPSPFQPLRNLTIL 495
Query: 518 SMSKNHLEGNVPVQLNNLERLRILDISENRLS---------GPIASSLNLSSVEHLSLQK 568
+S N++ L LE+L ILD+ N L+ GPI LS + L+L+
Sbjct: 496 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 555
Query: 569 NALNGLIPGELFR---SCKLVTLNLRD-NTFSGRIPHQINEHSNLRFLLLGGNHLQ---- 620
N + IP E+F+ K++ L L + NT + N +L+ L L N +
Sbjct: 556 NGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASV---FNNQVSLKSLNLQKNLITSVEK 611
Query: 621 ---GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPEL 675
GP + L +D+ N F C ++W V + +N + N PEL
Sbjct: 612 KVFGP------AFRNLTELDMRFNPFD-----CTCESIAWFV---NWINETHTNIPEL 655
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 39/222 (17%)
Query: 311 FLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHL 370
F H L++LDLS N +V + LKN++ G P L L
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEY---------------LKNSACKG--AWPS-----LQTL 366
Query: 371 DISCNNFRG-KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGG 429
+S N+ R + + + L+ L +DIS+N F +P S +++ L+LS S G
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLS----STG 421
Query: 430 LSQSVVTGCF--SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSST 487
+ VV C +LE+LD+SNNN + FS + L RL+ LY N + D L
Sbjct: 422 IR--VVKTCIPQTLEVLDVSNNNLDS--FSLF--LPRLQELYISRNKLK-TLPDASLFPV 474
Query: 488 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP 529
L V+ IS N L +P + + + L+ + + N + + P
Sbjct: 475 -LLVMKISRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 514
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 9/150 (6%)
Query: 116 LEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLI 175
+E +Q L+ + + D+++ L++L ++ L L N + S + L S+ TL
Sbjct: 62 IEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLD 119
Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
L +I G+ L+ L+ L+ N I + I+ L LT L+ L I +NQ+N P
Sbjct: 120 LTSTQITDVTPLAGLSNLQVLY---LDLNQITN--ISPLAGLTNLQYLSIGNNQVNDLTP 174
Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLAN 265
++NL+ L L N + PL+SL N
Sbjct: 175 --LANLSKLTTLRADDNKISDISPLASLPN 202
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 9/150 (6%)
Query: 122 LDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRI 181
LD + +++ V + ++ L L L L N D + L L + L L N +
Sbjct: 46 LDGIATLSAFNTGVTTIEGIQYLNNLIGLELKDNQITD--LTPLKNLTKITELELSGNPL 103
Query: 182 EGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNL 241
+ G+ +K L +L I +T L L+ L++L + NQ+ P ++ L
Sbjct: 104 KNVSAIAGLQSIKTL---DLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISP--LAGL 156
Query: 242 TSLEYLDLSHNNFEGMFPLSSLANHSKLEG 271
T+L+YL + +N + PL++L+ + L
Sbjct: 157 TNLQYLSIGNNQVNDLTPLANLSKLTTLRA 186
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 24/152 (15%)
Query: 92 LKNTTRLN-YPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLR-------- 142
LKN T++ PL N+S L+ +++LDL+ T + +A +L+
Sbjct: 87 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ 146
Query: 143 --------SLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELK 194
L L+ L +G+N +D + L L L TL N+I + L
Sbjct: 147 ITNISPLAGLTNLQYLSIGNNQVND--LTPLANLSKLTTLRADDNKISDISP---LASLP 201
Query: 195 NLFEMNLERNFIGSPLITCLKNLTRLKILDIS 226
NL E++L+ N I ++ L NL+ L I+ ++
Sbjct: 202 NLIEVHLKDNQISD--VSPLANLSNLFIVTLT 231
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 21/187 (11%)
Query: 478 KIKDGLLSSTSLQVLDISNNMLS-------GHIPHWMGNFSSELEILSMSKNHLEGNVPV 530
++ DG+ ST+ ++L++ N + H+ H LEIL +S+NH+
Sbjct: 57 EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRH--------LEILQLSRNHIRTIEIG 106
Query: 531 QLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN 589
N L L L++ +NRL+ P + + LS ++ L L+ N + + R L L+
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166
Query: 590 LRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 648
L + I E SNLR+L L +L+ IP+ L L KL +DLS N S P
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRP 224
Query: 649 PCFANVL 655
F ++
Sbjct: 225 GSFQGLM 231
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 64/158 (40%), Gaps = 32/158 (20%)
Query: 104 WFPLLNMSL--FHPLEELQSLDLS-VNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDS 160
W PL ++ F ELQ LDLS I T + AY +SL L L+L N
Sbjct: 39 WNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--GAY---QSLSHLSTLILTGNPIQSL 93
Query: 161 IFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRL 220
+ L SL L+ + S N I LK L E+N+ N I S
Sbjct: 94 ALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQS------------ 140
Query: 221 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 258
LP SNLT+LE+LDLS N + ++
Sbjct: 141 -----------FKLPEYFSNLTNLEHLDLSSNKIQSIY 167
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 18/230 (7%)
Query: 380 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 439
K+P N+ + L D+S N YS EL +LDLSR Q++ G +
Sbjct: 23 KIPDNLPFSTKNL---DLSWNPLRHLGSYSFFSFPELQVLDLSRCEI-----QTIEDGAY 74
Query: 440 S----LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS 495
L L L+ N + + L+ L+ L N + + +L+ L+++
Sbjct: 75 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 134
Query: 496 NNML-SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI-- 552
+N++ S +P + N ++ LE L +S N ++ L L ++ +L++S + P+
Sbjct: 135 HNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 193
Query: 553 --ASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 600
+ ++ L+L N L + G R L + L N + P
Sbjct: 194 IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
Query: 134 KVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICEL 193
+V D+ + L+ L+IL L N N LPSL TL L NR+ T Q L
Sbjct: 48 QVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPT-QAFEYL 106
Query: 194 KNLFEMNLERNFIGSPLITCLKNLTRLKILDISS-NQLNGSLPSVISNLTSLEYLDLSHN 252
L E+ L N I S + L+ LD+ +L + L +L YL+L
Sbjct: 107 SKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC 166
Query: 253 NFEGMFPLSSLANHSKLE 270
N + + L++L +LE
Sbjct: 167 NLKDIPNLTALVRLEELE 184
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 70/156 (44%), Gaps = 22/156 (14%)
Query: 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALN 572
LEIL +SKN + N L L L++ +NRL+ P + LS + L L+ N +
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 573 GLIPGELF-RSCKLVTLNL---------RDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP 622
IP F R L L+L + F G + NLR+L LG +L+
Sbjct: 121 S-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV--------NLRYLNLGMCNLKD- 170
Query: 623 IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 658
IP+ L L +L ++LS N+ P F + S R
Sbjct: 171 IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 105/243 (43%), Gaps = 26/243 (10%)
Query: 317 HLKYLDLSHNKL-VGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCN 375
H K+ LS + + FPT L P L+ L L N G + K L +LD+S N
Sbjct: 306 HFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRN 360
Query: 376 --NFRGKLPH-NMGVILQKLMYMDISKNCFEGNIPYSAGEM--KELSLLDLSRNYFSGGL 430
+F G + ++G L ++D+S F G I SA M +EL LD +
Sbjct: 361 ALSFSGCCSYSDLGT--NSLRHLDLS---FNGAIIMSANFMGLEELQHLDFQHSTLKRVT 415
Query: 431 SQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS----- 485
S L LD+S N + F ++ LT L L N+F KD LS
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF----KDNTLSNVFAN 471
Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 545
+T+L LD+S L I + + L++L+MS N+L N L L LD S
Sbjct: 472 TTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530
Query: 546 NRL 548
NR+
Sbjct: 531 NRI 533
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 27/141 (19%)
Query: 113 FHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLC 172
F LEELQ LD + ++ +A+ SL L L I D IF L +L +L
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL- 453
Query: 173 TLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNG 232
++ G+ +F + L N T L LD+S QL
Sbjct: 454 -------KMAGN-------------------SFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487
Query: 233 SLPSVISNLTSLEYLDLSHNN 253
V L L+ L++SHNN
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNN 508
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 105/243 (43%), Gaps = 26/243 (10%)
Query: 317 HLKYLDLSHNKL-VGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCN 375
H K+ LS + + FPT L P L+ L L N G + K L +LD+S N
Sbjct: 301 HFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRN 355
Query: 376 --NFRGKLPH-NMGVILQKLMYMDISKNCFEGNIPYSAGEM--KELSLLDLSRNYFSGGL 430
+F G + ++G L ++D+S F G I SA M +EL LD +
Sbjct: 356 ALSFSGCCSYSDLGT--NSLRHLDLS---FNGAIIMSANFMGLEELQHLDFQHSTLKRVT 410
Query: 431 SQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS----- 485
S L LD+S N + F ++ LT L L N+F KD LS
Sbjct: 411 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF----KDNTLSNVFAN 466
Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 545
+T+L LD+S L I + + L++L+MS N+L N L L LD S
Sbjct: 467 TTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 525
Query: 546 NRL 548
NR+
Sbjct: 526 NRI 528
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 27/141 (19%)
Query: 113 FHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLC 172
F LEELQ LD + ++ +A+ SL L L I D IF L +L +L
Sbjct: 390 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL- 448
Query: 173 TLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNG 232
++ G+ +F + L N T L LD+S QL
Sbjct: 449 -------KMAGN-------------------SFKDNTLSNVFANTTNLTFLDLSKCQLEQ 482
Query: 233 SLPSVISNLTSLEYLDLSHNN 253
V L L+ L++SHNN
Sbjct: 483 ISWGVFDTLHRLQLLNMSHNN 503
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
Query: 134 KVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICEL 193
+V D+ + L+ L+IL L N N LPSL TL L NR+ T Q L
Sbjct: 48 QVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPT-QAFEYL 106
Query: 194 KNLFEMNLERNFIGSPLITCLKNLTRLKILDISS-NQLNGSLPSVISNLTSLEYLDLSHN 252
L E+ L N I S + L+ LD+ +L + L +L YL+L
Sbjct: 107 SKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC 166
Query: 253 NFEGMFPLSSLANHSKLE 270
N + + L++L +LE
Sbjct: 167 NLKDIPNLTALVRLEELE 184
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 70/156 (44%), Gaps = 22/156 (14%)
Query: 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALN 572
LEIL +SKN + N L L L++ +NRL+ P + LS + L L+ N +
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 573 GLIPGELF-RSCKLVTLNL---------RDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP 622
IP F R L L+L + F G + NLR+L LG +L+
Sbjct: 121 S-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV--------NLRYLNLGMCNLKD- 170
Query: 623 IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 658
IP+ L L +L ++LS N+ P F + S R
Sbjct: 171 IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 64/158 (40%), Gaps = 32/158 (20%)
Query: 104 WFPLLNMSL--FHPLEELQSLDLS-VNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDS 160
W PL ++ F ELQ LDLS I T + AY +SL L L+L N
Sbjct: 38 WNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--GAY---QSLSHLSTLILTGNPIQSL 92
Query: 161 IFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRL 220
+ L SL L+ + S N I LK L E+N+ N I S
Sbjct: 93 ALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQS------------ 139
Query: 221 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 258
LP SNLT+LE+LDLS N + ++
Sbjct: 140 -----------FKLPEYFSNLTNLEHLDLSSNKIQSIY 166
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 18/230 (7%)
Query: 380 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 439
K+P N+ + L D+S N YS EL +LDLSR Q++ G +
Sbjct: 22 KIPDNLPFSTKNL---DLSWNPLRHLGSYSFFSFPELQVLDLSRCEI-----QTIEDGAY 73
Query: 440 S----LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS 495
L L L+ N + + L+ L+ L N + + +L+ L+++
Sbjct: 74 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 133
Query: 496 NNML-SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI-- 552
+N++ S +P + N ++ LE L +S N ++ L L ++ +L++S + P+
Sbjct: 134 HNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 192
Query: 553 --ASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 600
+ ++ L+L N L + G R L + L N + P
Sbjct: 193 IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Query: 136 AAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKN 195
+D L SL QL LG N N L SL L L N+++ S N +L
Sbjct: 46 GVFDELTSLTQL---YLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQ 101
Query: 196 LFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE 255
L E+ L N + S LT+LK L + NQL V LTSL+Y+ L N ++
Sbjct: 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161
Query: 256 GMFP 259
P
Sbjct: 162 CTCP 165
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 444 LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGH 502
LDL N+ + + LT L LY N + +G+ + TSL L++S N L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-S 90
Query: 503 IPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSLNLSSV 561
+P+ + + ++L+ L+++ N L+ + L +L+ L + +N+L S P L+S+
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 562 EHLSLQKNALNGLIPG 577
+++ L N + PG
Sbjct: 151 QYIWLHDNPWDCTCPG 166
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 62/150 (41%), Gaps = 36/150 (24%)
Query: 113 FHPLEELQSLDLS-VNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDD---SIFSYLNTL 168
F ELQ LDLS I T + AY +SL L L+L N FS L++L
Sbjct: 50 FFSFPELQVLDLSRCEIQTIED--GAY---QSLSHLSTLILTGNPIQSLALGAFSGLSSL 104
Query: 169 PSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSN 228
L L + +E N I LK L E+N+ N I S
Sbjct: 105 QKLVALETNLASLE----NFPIGHLKTLKELNVAHNLIQS-------------------- 140
Query: 229 QLNGSLPSVISNLTSLEYLDLSHNNFEGMF 258
LP SNLT+LE+LDLS N + ++
Sbjct: 141 ---FKLPEYFSNLTNLEHLDLSSNKIQSIY 167
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 59/147 (40%), Gaps = 30/147 (20%)
Query: 113 FHPLEELQSLDLS-VNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSL 171
F ELQ LDLS I T + AY +SL L L+L N + L SL
Sbjct: 49 FFSFPELQVLDLSRCEIQTIED--GAY---QSLSHLSTLILTGNPIQSLALGAFSGLSSL 103
Query: 172 CTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLN 231
L+ + S N I LK L E+N+ N I S
Sbjct: 104 QKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQS----------------------- 139
Query: 232 GSLPSVISNLTSLEYLDLSHNNFEGMF 258
LP SNLT+LE+LDLS N + ++
Sbjct: 140 FKLPEYFSNLTNLEHLDLSSNKIQSIY 166
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 59/147 (40%), Gaps = 30/147 (20%)
Query: 113 FHPLEELQSLDLS-VNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSL 171
F ELQ LDLS I T + AY +SL L L+L N + L SL
Sbjct: 48 FFSFPELQVLDLSRCEIQTIED--GAY---QSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Query: 172 CTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLN 231
L+ + S N I LK L E+N+ N I S
Sbjct: 103 QKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQS----------------------- 138
Query: 232 GSLPSVISNLTSLEYLDLSHNNFEGMF 258
LP SNLT+LE+LDLS N + ++
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIY 165
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 122/302 (40%), Gaps = 50/302 (16%)
Query: 318 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 377
L+ LDL+ L P+ L+ + L+ L+L N F + Q+ + L HL I N
Sbjct: 280 LQELDLTATHL-SELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337
Query: 378 RGKLPHNMGVILQKLMYMDISKNCFEG-----------------NIPYSA---------G 411
R +L L+ L +D+S + E N+ Y+
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397
Query: 412 EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFE 471
E +L LLDL+ +QS L++L+LS++ + + L L+HL +
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457
Query: 472 NNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ 531
N+F K + + SLQ L LEIL +S L
Sbjct: 458 GNHFP---KGNIQKTNSLQTL-------------------GRLEILVLSFCDLSSIDQHA 495
Query: 532 LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 591
+L+ + +D+S NRL+ +L+ +L+L N ++ ++P L + T+NLR
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLR 555
Query: 592 DN 593
N
Sbjct: 556 QN 557
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 23/169 (13%)
Query: 179 NRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVI 238
NRI+ ++ +L E+ L N + + NL L+ L + SN+L V
Sbjct: 42 NRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF 100
Query: 239 SNLTSLEYLDLSHNN--------FEGMFPLSSLA---------NHSKLEGL-----LLST 276
+ L++L LD+S N F+ ++ L SL +H GL L
Sbjct: 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160
Query: 277 RNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSH 325
+ N + TE LIVL L N+N Y LK L++SH
Sbjct: 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 51/129 (39%), Gaps = 30/129 (23%)
Query: 137 AYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNL 196
+D L L++L L HNY LN+LP + H + G N L L
Sbjct: 472 CWDVFEGLSHLQVLYLNHNY--------LNSLPP--GVFSHLTALRGLSLNSN--RLTVL 519
Query: 197 FEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG 256
+L N L+ILDIS NQL P V SL LD++HN F
Sbjct: 520 SHNDLPAN---------------LEILDISRNQLLAPNPDV---FVSLSVLDITHNKFIC 561
Query: 257 MFPLSSLAN 265
LS+ N
Sbjct: 562 ECELSTFIN 570
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 103/255 (40%), Gaps = 28/255 (10%)
Query: 318 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 377
+++LDLSH V + + + L+VL L N + I D L L++S N
Sbjct: 268 VRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS-YNL 325
Query: 378 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRN------------- 424
G+L + L K+ Y+D+ KN + +++L LDL N
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385
Query: 425 -YFSGGLSQSVVTGCFSLELLDLSNNNFEG-QFFSEYMNLTRLRHLYFENNNFSGKIKDG 482
+ SG ++ + L+ LS N E + + L+ L N FS D
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445
Query: 483 LLSST-SLQVLDISNNMLSGHIPHWMGNFS-------SELEILSMSKNHLEGNVPVQLNN 534
S SL+ L + NML W S L++L ++ N+L P ++
Sbjct: 446 TPSENPSLEQLFLGENMLQ---LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502
Query: 535 LERLRILDISENRLS 549
L LR L ++ NRL+
Sbjct: 503 LTALRGLSLNSNRLT 517
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 41/184 (22%)
Query: 198 EMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN----- 252
++L F+ S + L LK+L+++ N++N L +L+ L+LS+N
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329
Query: 253 ---NFEGMFPLSSL---ANHSK---------LEGL-LLSTRNNTLHVKTENWLPTSQLIV 296
NF G+ ++ + NH LE L L R+N L T +++P+ I
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL--TTIHFIPSIPDIF 387
Query: 297 LG------LTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKN 350
L L K NL + L+H LS N+L + L P L++L+L
Sbjct: 388 LSGNKLVTLPKINLTAN----LIH--------LSENRLENLDILYFLLRVPHLQILILNQ 435
Query: 351 NSFS 354
N FS
Sbjct: 436 NRFS 439
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 24/170 (14%)
Query: 118 ELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILH 177
EL S+D I +S + + ++ L + L L N D L L +L L L
Sbjct: 41 ELNSID---QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLD 95
Query: 178 WNRIEGSQT-------------NQGICELKNLFEM-NLERNFIGS---PLITCLKNLTRL 220
N+I+ + + GI ++ L + LE ++G+ IT L LT+L
Sbjct: 96 ENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKL 155
Query: 221 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 270
L + NQ++ +P ++ LT L+ L LS N+ + L+ L N LE
Sbjct: 156 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 203
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 160 SIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTR 219
S+FS+ L L N+I+ + L +L ++NL +NF+GS +NL +
Sbjct: 293 SVFSHFTDLEQLTLAQNEINKID----DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348
Query: 220 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGM 257
L++LD+S N + L +L+ L L N + +
Sbjct: 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 80/355 (22%), Positives = 145/355 (40%), Gaps = 61/355 (17%)
Query: 278 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSY--PDFLLHQYHLKYLDLSHNKLVGNFPTW 335
N L ++T + + L VL LT+CNL+G+ +F L+ L L N + P
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 336 LLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYM 395
N + VL L N I + D L NF+GK H + L +
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSI-----CEEDLL--------NFQGK--HFTLLRLSSITLQ 193
Query: 396 DISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ---SVVTGCFSLELLDLSNNNFE 452
D+++ + + ++ LDLS N F +++ + G ++ L LSN+
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT-KIQSLILSNSYNM 252
Query: 453 GQFFSEYMNLTRLRHLYFEN-NNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFS 511
G F H F++ +NF+ K L ++ ++ D+S + + + +F
Sbjct: 253 GSSFG---------HTNFKDPDNFTFKG----LEASGVKTCDLSKSKIFALLKSVFSHF- 298
Query: 512 SELEILSMSKNHLE-----------------------GNVPVQL-NNLERLRILDISENR 547
++LE L++++N + G++ ++ NL++L +LD+S N
Sbjct: 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH 358
Query: 548 LSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPH 601
+ S L L +++ L+L N L + G R L + L N + P
Sbjct: 359 IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 93/401 (23%), Positives = 156/401 (38%), Gaps = 61/401 (15%)
Query: 291 TSQLIVLGLTKCNLNGSYPDFLLHQY-----HLKYLDLSHNKLVGNFPT--------WLL 337
TS+ V+G +N LHQ H+ Y+DLS N + T L
Sbjct: 5 TSECSVIGYNAICINRG-----LHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFL 59
Query: 338 RNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDI 397
+ + L+++NN+F G+ L K D+ L + F G N+ V+ L ++
Sbjct: 60 KVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL--ANLEVL--TLTQCNL 115
Query: 398 SKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN-------- 449
GN + L +L L N S +LDL+ N
Sbjct: 116 DGAVLSGNF---FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172
Query: 450 ---NFEGQFFSEYMNLTRLRHLYFENNN--FSGKIKDG-LLSSTSLQVLDISNNMLSGHI 503
NF+G+ F+ L RL + ++ N + G K G +TS+ LD+S N +
Sbjct: 173 DLLNFQGKHFT----LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228
Query: 504 PHWMGNFSSELEILSM----------SKNHLEGNVP--VQLNNLER--LRILDISENRLS 549
+ + +I S+ S H P LE ++ D+S++++
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF 288
Query: 550 GPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH-S 607
+ S + + +E L+L +N +N + + L+ LNL N F G I ++ E+
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLD 347
Query: 608 NLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 648
L L L NH++ L L + L N+ S+P
Sbjct: 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVP 387
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 3/132 (2%)
Query: 467 HLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE 525
L NN F+ G+ L+ ++ SNN ++ S EIL ++ N LE
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL-LTSNRLE 94
Query: 526 GNVPVQLNNLERLRILDISENRLSGPIASS-LNLSSVEHLSLQKNALNGLIPGELFRSCK 584
LE L+ L + NR++ S + LSSV LSL N + + PG
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 585 LVTLNLRDNTFS 596
L TLNL N F+
Sbjct: 155 LSTLNLLANPFN 166
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 189 GICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLD 248
G+ L L + L N I IT L LT+L L + NQ++ +P ++ LT L+ L
Sbjct: 129 GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 184
Query: 249 LSHNNFEGMFPLSSLANHSKLE 270
LS N+ + L+ L N LE
Sbjct: 185 LSKNHISDLRALAGLKNLDVLE 206
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 24/170 (14%)
Query: 118 ELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILH 177
EL S+D I +S + + ++ L + L L N D L L +L L L
Sbjct: 62 ELNSID---QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLD 116
Query: 178 WNRIEGSQT-------------NQGICELKNLFEM-NLERNFIGS---PLITCLKNLTRL 220
N+I+ + + GI ++ L + LE ++G+ IT L LT+L
Sbjct: 117 ENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKL 176
Query: 221 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 270
L + NQ++ +P ++ LT L+ L LS N+ + L+ L N LE
Sbjct: 177 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 224
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 24/170 (14%)
Query: 118 ELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILH 177
EL S+D I +S + + ++ L + L L N D L L +L L L
Sbjct: 62 ELNSID---QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLD 116
Query: 178 WNRIEGSQT-------------NQGICELKNLFEM-NLERNFIGS---PLITCLKNLTRL 220
N+I+ + + GI ++ L + LE ++G+ IT L LT+L
Sbjct: 117 ENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKL 176
Query: 221 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 270
L + NQ++ +P ++ LT L+ L LS N+ + L+ L N LE
Sbjct: 177 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 224
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 24/170 (14%)
Query: 118 ELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILH 177
EL S+D I +S + + ++ L + L L N D L L +L L L
Sbjct: 62 ELNSID---QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLD 116
Query: 178 WNRIEGSQT-------------NQGICELKNLFEM-NLERNFIGS---PLITCLKNLTRL 220
N+I+ + + GI ++ L + LE ++G+ IT L LT+L
Sbjct: 117 ENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKL 176
Query: 221 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 270
L + NQ++ +P ++ LT L+ L LS N+ + L+ L N LE
Sbjct: 177 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 224
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.9 bits (76), Expect = 0.45, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 30/126 (23%)
Query: 174 LILHWNRIEGSQTNQGICE-LKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLN- 231
L LH N+I ++ G+ + L NL E+ L N +G+ + +LT+L +LD+ +NQL
Sbjct: 45 LYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 232 ----------------------GSLPSVISNLTSLEYLDLSHNNFE----GMFPLSSLAN 265
LP I LT L +L L N + G F S
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162
Query: 266 HSKLEG 271
H+ L G
Sbjct: 163 HAYLFG 168
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 461 NLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSM 519
+L L+ LY +N G + G+ S T L VLD+ N L+ +P + + L+ L M
Sbjct: 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFM 119
Query: 520 SKNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSLNLSSVEHLSLQKN 569
N L +P + L L L + +N+L S P + LSS+ H L N
Sbjct: 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 30.0 bits (66), Expect = 7.0, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 3/132 (2%)
Query: 463 TRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSK 521
T + LY +N + K++ G+ S +L+ L + +N L G +P + + ++L +L +
Sbjct: 40 TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97
Query: 522 NHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFR 581
N L + L L+ L + N+L+ L+ + HL+L +N L + G R
Sbjct: 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157
Query: 582 SCKLVTLNLRDN 593
L L N
Sbjct: 158 LSSLTHAYLFGN 169
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 410 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFS----LELLDLSNNNFEGQFFSEYMNLTRL 465
AG KEL +L + + Q++ G F L L L N + + +LT+L
Sbjct: 78 AGIFKELK--NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 466 RHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE 525
+L N K TSL+ L + NN L +P + +EL+ L + N L+
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194
Query: 526 GNVPVQLNNLERLRILDISEN 546
++LE+L++L + EN
Sbjct: 195 RVPEGAFDSLEKLKMLQLQEN 215
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 10/149 (6%)
Query: 492 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG- 550
+D S+ L+ IP N ++ + L + N L + L +LR+L +++N+L
Sbjct: 21 VDCSSKKLTA-IPS---NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76
Query: 551 PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLR 610
P L ++E L + N L L G + L L L N P + + L
Sbjct: 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 611 FLLLGGNHLQGPIP----DQLCQLQKLAM 635
+L LG N LQ +P D+L L++L +
Sbjct: 137 YLSLGYNELQS-LPKGVFDKLTSLKELRL 164
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 541 LDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 600
+D S +L+ I S++ + + L LQ N L+ L R KL L L DN
Sbjct: 21 VDCSSKKLTA-IPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Query: 601 HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 649
E NL L + N LQ QL LA + L RN+ S+PP
Sbjct: 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPP 126
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 144 LKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGIC-ELKNLFEMNLE 202
L +L++L L N L +L TL + N+++ G+ +L NL E+ L+
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI--GVFDQLVNLAELRLD 117
Query: 203 RNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF----EGMF 258
RN + S +LT+L L + N+L V LTSL+ L L +N EG F
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 189 GICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLD 248
G+ L L + L N I IT L LT+L L + NQ++ +P ++ LT L+ L
Sbjct: 129 GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 184
Query: 249 LSHNNFEGMFPLSSLANHSKLE 270
LS N+ + L+ L N LE
Sbjct: 185 LSKNHISDLRALAGLKNLDVLE 206
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 189 GICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLD 248
G+ L L + L N I IT L LT+L L + NQ++ +P ++ LT L+ L
Sbjct: 127 GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 182
Query: 249 LSHNNFEGMFPLSSLANHSKLE 270
LS N+ + L+ L N LE
Sbjct: 183 LSKNHISDLRALAGLKNLDVLE 204
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 189 GICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLD 248
G+ L L + L N I IT L LT+L L + NQ++ +P ++ LT L+ L
Sbjct: 149 GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 204
Query: 249 LSHNNFEGMFPLSSLANHSKLE 270
LS N+ + L+ L N LE
Sbjct: 205 LSKNHISDLRALAGLKNLDVLE 226
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 57/145 (39%), Gaps = 6/145 (4%)
Query: 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISEN---RLSGPIASSLNLSSVEHLSLQKNA 570
L IL + N L G L L LD+S+N R+ P + L + L L +
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP-TTFRGLGHLHTLHLDRCG 115
Query: 571 LNGLIPGELFRS-CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 629
L L PG LFR L L L+DN + + NL L L GN +
Sbjct: 116 LQELGPG-LFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRG 174
Query: 630 LQKLAMMDLSRNKFSGSIPPCFANV 654
L L + L +N + P F ++
Sbjct: 175 LHSLDRLLLHQNHVARVHPHAFRDL 199
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 47/197 (23%), Positives = 74/197 (37%), Gaps = 25/197 (12%)
Query: 325 HNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCN--------- 375
H + P ++ L +L L +N+ +GI L LD+S N
Sbjct: 39 HGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPT 98
Query: 376 NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFS--GGLS-- 431
FRG L H + L + ++ F G +++ +L L N F G L+
Sbjct: 99 TFRG-LGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 432 -----------QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK 480
+ G SL+ L L N+ + +L RL LY NN S
Sbjct: 158 FLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPA 217
Query: 481 DGLLSSTSLQVLDISNN 497
+ L+ SLQ L +++N
Sbjct: 218 EVLVPLRSLQYLRLNDN 234
Score = 30.4 bits (67), Expect = 5.4, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 2/115 (1%)
Query: 430 LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSL 489
L + G +L+ L L +NN + + + +L L HL+ N + SL
Sbjct: 119 LGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSL 178
Query: 490 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKN--HLEGNVPVQLNNLERLRILD 542
L + N ++ PH + + + + N L V V L +L+ LR+ D
Sbjct: 179 DRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLND 233
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 31/177 (17%)
Query: 85 GRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYD-SKVAAYDSLRS 143
G+V L+++ RL+ P + LF+ L L SL V T + SKV L S
Sbjct: 281 GKVETLTIR---RLHIPRFY-------LFYDLSTLYSLTERVKRITVENSKVFLVPCLLS 330
Query: 144 --LKQLKILVLGHN-----YFDDSIFSYLNTLPSLCTLILHWNRIEG-SQTNQGICELKN 195
LK L+ L L N Y +S + PSL TLIL N + +T + + LKN
Sbjct: 331 QHLKSLEYLDLSENLMVEEYLKNSACE--DAWPSLQTLILRQNHLASLEKTGETLLTLKN 388
Query: 196 LFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLN---GSLPSVISNLTSLEYLDL 249
L +++ +N S TC + ++K L++SS +++ G +P +LE LD+
Sbjct: 389 LTNIDISKNSFHSMPETC-QWPEKMKYLNLSSTRIHSVTGCIPK------TLEILDV 438
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 94/224 (41%), Gaps = 49/224 (21%)
Query: 314 HQYHLKYLDLSHNKLVGNFPTWLLRNN------PKLEVLLLKNNSFSGILQLPKAKHDFL 367
H L+YLDLS N +V + L+N+ P L+ L+L+ N + L K L
Sbjct: 332 HLKSLEYLDLSENLMVEEY----LKNSACEDAWPSLQTLILRQNHLAS---LEKTGETLL 384
Query: 368 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFS 427
L+ L +DISKN F ++P + +++ L+LS
Sbjct: 385 --------------------TLKNLTNIDISKNSFH-SMPETCQWPEKMKYLNLSSTRIH 423
Query: 428 GGLSQSVVTGCF--SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS 485
VTGC +LE+LD+SNN +NL +L+ LY N LL
Sbjct: 424 S------VTGCIPKTLEILDVSNN----NLNLFSLNLPQLKELYISRNKLMTLPDASLLP 473
Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP 529
L VL IS N L +P + + + L+ + + N + + P
Sbjct: 474 --MLLVLKISRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 514
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 734 VTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYN--- 790
V LDLS N++T SD+ + + A +SFS+L +E LD+SYN
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 791 KLTGQIPPQLTALNFLSIFNVSYNNL 816
L+ L++L FL++ Y L
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTL 113
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 422 SRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD 481
S N GL+++V + LDLSNN S+ L+ L +N + +D
Sbjct: 16 SLNSIPSGLTEAVKS-------LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 68
Query: 482 GLLSSTSLQVLDISNNMLSGHIPHWMGNFSS 512
S SL+ LD+S N LS W SS
Sbjct: 69 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 99
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 512 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNA 570
++L L++ N L+ ++L L L ++ N+L+ P+ +L+ ++ L L N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 571 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL 630
L L G R KL L L N ++ +NL+ L L N LQ +L
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178
Query: 631 QKLAMMDLSRNKFSGS 646
KL + L N+F S
Sbjct: 179 GKLQTITLFGNQFDCS 194
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 63/165 (38%), Gaps = 31/165 (18%)
Query: 92 LKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILV 151
L T LN Y+ L+ +F L EL +L L+ N + +D L QL L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHL---TQLDKLY 113
Query: 152 LGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICE-LKNLFEMNLERNFIGSPL 210
LG N L +LPS G+ + L L E+ L N + S
Sbjct: 114 LGGNQ--------LKSLPS------------------GVFDRLTKLKELRLNTNQLQSIP 147
Query: 211 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE 255
LT L+ L +S+NQL L L+ + L N F+
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 512 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNA 570
++L L++ N L+ ++L L L ++ N+L+ P+ +L+ ++ L L N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 571 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL 630
L L G R KL L L N ++ +NL+ L L N LQ +L
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178
Query: 631 QKLAMMDLSRNKFSGS 646
KL + L N+F S
Sbjct: 179 GKLQTITLFGNQFDCS 194
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 31/166 (18%)
Query: 91 SLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKIL 150
L T LN Y+ L+ +F L EL +L L+ N + +D L QL L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHL---TQLDKL 112
Query: 151 VLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICE-LKNLFEMNLERNFIGSP 209
LG N L +LPS G+ + L L E+ L N + S
Sbjct: 113 YLGGNQ--------LKSLPS------------------GVFDRLTKLKELRLNTNQLQSI 146
Query: 210 LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE 255
LT L+ L +S+NQL L L+ + L N F+
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 418 LLDLSRNYFSGGLSQSVVTGCFS----LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 473
L++L + YF+ ++ TG F L LDL++N+ + + NL L H+Y NN
Sbjct: 56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Query: 474 NFSGKIKD 481
+ + +D
Sbjct: 116 PWDCECRD 123
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 189 GICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLD 248
G+ L L + L N I IT L LT+L L + NQ++ +P ++ LT L+ L
Sbjct: 124 GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 179
Query: 249 LSHNNFEGMFPLSSLANHSKLE 270
LS N+ + L+ L N LE
Sbjct: 180 LSKNHISDLRALAGLKNLDVLE 201
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.1 bits (74), Expect = 0.79, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 8/158 (5%)
Query: 502 HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN---RLSGPIASSLNL 558
H+P L IL + N L L L LD+S+N R P A+ L
Sbjct: 46 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGL 104
Query: 559 SSVEHLSLQKNALNGLIPGELFRS-CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 617
+ L L + L L PG LFR L L L+DN + NL L L GN
Sbjct: 105 GRLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163
Query: 618 HLQGPIPDQLCQ-LQKLAMMDLSRNKFSGSIPPCFANV 654
+ +P++ + L L + L +N+ + P F ++
Sbjct: 164 RISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 3/155 (1%)
Query: 489 LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL 548
L+ LD+S+N + + L L + + L+ P L L+ L + +N L
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 549 SG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQINEH 606
P + +L ++ HL L N ++ +P FR L L L N + PH +
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Query: 607 SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 641
L L L N+L + L L+ L + L+ N
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.1 bits (74), Expect = 0.79, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 8/158 (5%)
Query: 502 HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN---RLSGPIASSLNL 558
H+P L IL + N L L L LD+S+N R P A+ L
Sbjct: 45 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGL 103
Query: 559 SSVEHLSLQKNALNGLIPGELFRS-CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 617
+ L L + L L PG LFR L L L+DN + NL L L GN
Sbjct: 104 GRLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 162
Query: 618 HLQGPIPDQLCQ-LQKLAMMDLSRNKFSGSIPPCFANV 654
+ +P++ + L L + L +N+ + P F ++
Sbjct: 163 RISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 199
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 3/155 (1%)
Query: 489 LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL 548
L+ LD+S+N + + L L + + L+ P L L+ L + +N L
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 549 SG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQINEH 606
P + +L ++ HL L N ++ +P FR L L L N + PH +
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 199
Query: 607 SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 641
L L L N+L + L L+ L + L+ N
Sbjct: 200 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 39/123 (31%)
Query: 512 SELEILSMSKN----------HLEGN----VPVQLNNLERLRILDISENRLSGPIASSLN 557
S L+I ++S N +L GN +P ++ NL LR+LD+S NRL+
Sbjct: 232 SNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS------- 284
Query: 558 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 617
+P EL +L DN + +P + NL+FL + GN
Sbjct: 285 -----------------LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326
Query: 618 HLQ 620
L+
Sbjct: 327 PLE 329
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 14/51 (27%)
Query: 216 NLTRLKILDISSN----------QLNG----SLPSVISNLTSLEYLDLSHN 252
+L+ L+I +IS+N LNG LP+ I NL++L LDLSHN
Sbjct: 230 DLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN 280
>pdb|4GY7|A Chain A, Crystallographic Structure Analysis Of Urease From Jack
Bean (Canavalia Ensiformis) At 1.49 A Resolution
Length = 840
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 702 ALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSD 751
A +AA+D+RV + + + R E SNV ++T LD+ N EI D
Sbjct: 763 AFVSKAALDQRVNVLYGLNKRVEAV--SNVRKLTKLDMKLNDALPEITVD 810
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 32.7 bits (73), Expect = 0.99, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 492 LDISNNMLSGHI----PHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 547
LD+S+N L + P M +SS L L++S LE VP L +LR+LD+S NR
Sbjct: 229 LDLSHNSLRATVNPSAPRCM--WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNR 283
Query: 548 LSGPIASSLNLSSVEHLSLQKNALNGLIPG 577
L+ L V++L+L N L+PG
Sbjct: 284 LNRAPQPD-ELPEVDNLTLDGNPF--LVPG 310
>pdb|4H9M|A Chain A, The First Jack Bean Urease (Canavalia Ensiformis) Complex
Obtained At 1.52 Resolution
Length = 840
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 702 ALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSD 751
A +AA+D+RV + + + R E SNV ++T LD+ N EI D
Sbjct: 763 AFVSKAALDQRVNVLYGLNKRVEAV--SNVRKLTKLDMKLNDALPEITVD 810
>pdb|3LA4|A Chain A, Crystal Structure Of The First Plant Urease From Jack Bean
(Canavalia Ensiformis)
Length = 840
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 702 ALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSD 751
A +AA+D+RV + + + R E SNV ++T LD+ N EI D
Sbjct: 763 AFVSKAALDQRVNVLYGLNKRVEAV--SNVRKLTKLDMKLNDALPEITVD 810
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 523 HLEGN----VPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPG 577
+L+GN VP +L+N + L ++D+S NR+S S N++ + L L N L IP
Sbjct: 37 YLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPP 95
Query: 578 ELFRSCK-LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHL 619
F K L L+L N S N+ S L L +G N L
Sbjct: 96 RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 189 GICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLD 248
G+ L L + L N I IT L LT+L L + NQ+ +P ++ LT L+ L
Sbjct: 127 GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLY 182
Query: 249 LSHNNFEGMFPLSSLANHSKLE 270
LS N+ + L L N LE
Sbjct: 183 LSKNHISDLRALRGLKNLDVLE 204
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 494 ISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIA 553
IS++ L G +PH L L + +N L G P ++ L + EN++ I+
Sbjct: 44 ISSDGLFGRLPH--------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EIS 94
Query: 554 SS--LNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTF 595
+ L L ++ L+L N ++ ++PG L +LNL N F
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 411 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 468
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 469 YFENNNFSGKIKDGLLSSTS-LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 524
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 549
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 609
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENL 174
Query: 610 RFLLLGGNHL 619
LLL N L
Sbjct: 175 DTLLLQENSL 184
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 488 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 547
+L VLD+S N L+ +P EL+ L + N L+ P L +L L ++ N+
Sbjct: 101 ALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 548 LSGPIASSLN-LSSVEHLSLQKNALNGLIPGELFRS 582
L+ A LN L +++ L LQ+N+L IP F S
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGS 194
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 15/125 (12%)
Query: 241 LTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLT 300
T+L+ L LSHN + PL L +KLE L ++ RN +K N +P++ L L L
Sbjct: 62 FTNLKELHLSHNQISDLSPLKDL---TKLEELSVN-RN---RLKNLNGIPSACLSRLFLD 114
Query: 301 KCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS---GIL 357
L + D L+H +L+ L + +NKL L KLEVL L N + G+
Sbjct: 115 NNELRDT--DSLIHLKNLEILSIRNNKLKSIVMLGFLS---KLEVLDLHGNEITNTGGLT 169
Query: 358 QLPKA 362
+L K
Sbjct: 170 RLKKV 174
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 411 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 468
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 469 YFENNNFSGKIKDGLLSSTS-LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 524
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 549
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 609
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENL 174
Query: 610 RFLLLGGNHL 619
LLL N L
Sbjct: 175 DTLLLQENSL 184
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 488 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 547
+L VLD+S N L+ +P EL+ L + N L+ P L +L L ++ N+
Sbjct: 101 ALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 548 LSGPIASSLN-LSSVEHLSLQKNALNGLIPGELFRS 582
L+ A LN L +++ L LQ+N+L IP F S
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGS 194
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 411 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 468
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 469 YFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 524
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 549
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 609
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENL 174
Query: 610 RFLLLGGNHL 619
LLL N L
Sbjct: 175 DTLLLQENSL 184
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 488 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 547
+L VLD+S N L+ +P EL+ L + N L+ P L +L L ++ N+
Sbjct: 101 ALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 548 LSGPIASSLN-LSSVEHLSLQKNALNGLIPGELFRS 582
L+ A LN L +++ L LQ+N+L IP F S
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGS 194
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 165 LNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLT----RL 220
L+TL + L L N IE + G ++NL ++L RN LI ++NL L
Sbjct: 44 LSTLKACKHLALSTNNIEKISSLSG---MENLRILSLGRN-----LIKKIENLDAVADTL 95
Query: 221 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 275
+ L IS NQ+ SL S I L +L L +S+N + LA KLE LLL+
Sbjct: 96 EELWISYNQI-ASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 165 LNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLT----RL 220
L+TL + L L N IE + G ++NL ++L RN LI ++NL L
Sbjct: 45 LSTLKACKHLALSTNNIEKISSLSG---MENLRILSLGRN-----LIKKIENLDAVADTL 96
Query: 221 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 275
+ L IS NQ+ SL S I L +L L +S+N + LA KLE LLL+
Sbjct: 97 EELWISYNQI-ASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 149
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 189 GICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLD 248
G+ L L + L N I IT L LT+L L + NQ++ +P ++ LT L+ L
Sbjct: 124 GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLY 179
Query: 249 LSHNNFEGMFPLSSLANHSKLE 270
LS N+ + L L N LE
Sbjct: 180 LSKNHISDLRALCGLKNLDVLE 201
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 411 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 468
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 469 YFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 524
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 549
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 609
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENL 174
Query: 610 RFLLLGGNHL 619
LLL N L
Sbjct: 175 DTLLLQENSL 184
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 488 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 547
+L VLD+S N L+ +P EL+ L + N L+ P L +L L ++ N+
Sbjct: 101 ALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 548 LSGPIASSLN-LSSVEHLSLQKNALNGLIPGELFRS 582
L+ A LN L +++ L LQ+N+L IP F S
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGS 194
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 411 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 468
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 75 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 130
Query: 469 YFENNNFSGKIKDGLLSSTS-LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 524
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 131 YLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 549
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 63 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 115
Query: 550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 609
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 116 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 175
Query: 610 RFLLLGGNHL 619
LLL N L
Sbjct: 176 DTLLLQENSL 185
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 109/267 (40%), Gaps = 46/267 (17%)
Query: 419 LDLSRNYFSGGLSQSVVTGCFS----LELLDLSNNNFEGQFF-SEYMNLTRLRHLYFENN 473
L+L++N+ S + G FS L +LDL N E + E+ L + +Y N
Sbjct: 386 LNLTKNHIS-----KIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYN 440
Query: 474 NF----------SGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH 523
+ ++ +L +L+ +DIS + L IL +S N+
Sbjct: 441 KYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRP---------LRNLTILDLSNNN 491
Query: 524 LEGNVPVQLNNLERLRILDISENRLS---------GPIASSLNLSSVEHLSLQKNALNGL 574
+ L LE L ILD N L+ GP+ LS + L+L+ N L+
Sbjct: 492 IANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDE- 550
Query: 575 IPGELFRSC-KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC-QLQK 632
IP +F++ +L ++NL N + P ++ ++LR L L N + D Q
Sbjct: 551 IPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVFGPPFQN 610
Query: 633 LAMMDLSRNKFSGSIPPCFANVLSWRV 659
L +D+ N F C +SW V
Sbjct: 611 LNSLDMRFNPFD-----CTCESISWFV 632
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 57/142 (40%), Gaps = 21/142 (14%)
Query: 111 SLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPS 170
S F PL L LDLS N ++ D L L+ L+IL HN
Sbjct: 474 SPFRPLRNLTILDLSNNNIANINE----DLLEGLENLEILDFQHN--------------- 514
Query: 171 LCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQL 230
L W R + L +L +NLE N + + KNL LK +++ N L
Sbjct: 515 --NLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNL 572
Query: 231 NGSLPSVISNLTSLEYLDLSHN 252
N P + + TSL L+L N
Sbjct: 573 NKLEPFIFDDQTSLRSLNLQKN 594
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 487 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN 546
+S L++ +N L +PH + + ++L LS+S+N ++ + L +L IL + EN
Sbjct: 28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 547 RLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPH 601
+L P L+ ++ L+L N L + G R L + L N + P
Sbjct: 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 411 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 468
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 469 YFENNNFSGKIKDGLLSSTS-LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 524
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 549
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 609
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 610 RFLLLGGNHL 619
LLL N L
Sbjct: 175 DTLLLQENSL 184
>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asp Mutant Complexed With
Sulfate, A Closed Cap Conformation
Length = 243
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 427 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 460
S GL+ VVTG L LL+ +NF G F E M
Sbjct: 123 SEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, An Open Cap Conformation
pdb|3QU2|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QX7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Phosphate, A Closed Cap
Conformation
pdb|3QXG|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
pdb|3QXG|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
Length = 243
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 427 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 460
S GL+ VVTG L LL+ +NF G F E M
Sbjct: 123 SEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate
Length = 243
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 427 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 460
S GL+ VVTG L LL+ +NF G F E M
Sbjct: 123 SEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|E Chain E, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|F Chain F, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|G Chain G, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|H Chain H, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
Length = 243
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 427 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 460
S GL+ VVTG L LL+ +NF G F E M
Sbjct: 123 SEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
pdb|3QU5|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
Length = 243
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 427 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 460
S GL+ VVTG L LL+ +NF G F E M
Sbjct: 123 SEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QYP|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QUC|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Sulfate
Length = 243
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 427 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 460
S GL+ VVTG L LL+ +NF G F E M
Sbjct: 123 SEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant, An Open Cap
Conformation
pdb|3QU7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU7|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU9|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With
Magnesium And Tartrate
Length = 243
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 427 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 460
S GL+ VVTG L LL+ +NF G F E M
Sbjct: 123 SEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 411 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 468
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 469 YFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 524
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 549
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 609
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 610 RFLLLGGNHL 619
LLL N L
Sbjct: 175 DTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 411 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 468
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 469 YFENNNFSGKIKDGLLSSTS-LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 524
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 549
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 609
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 610 RFLLLGGNHL 619
LLL N L
Sbjct: 175 DTLLLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 411 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 468
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 469 YFENNNFSGKIKDGLLSSTS-LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 524
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 549
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 609
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENL 174
Query: 610 RFLLLGGNHL 619
LLL N L
Sbjct: 175 DTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 411 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 468
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 469 YFENNNFSGKIKDGLLSSTS-LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 524
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 549
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 609
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 610 RFLLLGGNHL 619
LLL N L
Sbjct: 175 DTLLLQENSL 184
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 16/143 (11%)
Query: 159 DSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFE-MNLERNFIGSPLITCLKNL 217
D+ + L+TLP L + H + ++ +Q + EL L E +N + N +T L L
Sbjct: 106 DACDNRLSTLPELPASLKHLD-VDNNQLT-XLPELPALLEYINADNN-----QLTXLPEL 158
Query: 218 -TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLST 276
T L++L + +NQL LP + SLE LD+S N E + + +HS+ +
Sbjct: 159 PTSLEVLSVRNNQLTF-LPELPE---SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRC 214
Query: 277 RNNTLHVKTENWL---PTSQLIV 296
R N + EN L PT +I+
Sbjct: 215 RENRITHIPENILSLDPTCTIIL 237
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 734 VTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYN--- 790
V LDLS N++T SD+ + + A +SFS+L +E LD+SYN
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 791 KLTGQIPPQLTALNFLSIFNVSYNNL 816
L+ L++L FL++ Y L
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTL 139
>pdb|4EZG|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
pdb|4EZG|B Chain B, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
Length = 197
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 152 LGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEM 199
+ H+ DDSI + +NTLP + ++ L +N G+ T+ I LK L E+
Sbjct: 119 ISHSAHDDSILTKINTLPKVNSIDLSYN---GAITD--IXPLKTLPEL 161
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Query: 405 NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTR 464
N+P S +LLDLS N S ++ T +L L LS+N+ ++ +
Sbjct: 32 NVPQSLPSYT--ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 465 LRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH 523
LR+L +N+ + + L S +L+VL + NN + + + ++L+ L +S+N
Sbjct: 90 LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM-AQLQKLYLSQNQ 147
Query: 524 LEGNVPVQL----NNLERLRILDISENRL 548
+ PV+L N L +L +LD+S N+L
Sbjct: 148 I-SRFPVELIKDGNKLPKLMLLDLSSNKL 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,041,182
Number of Sequences: 62578
Number of extensions: 1048393
Number of successful extensions: 3220
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 2039
Number of HSP's gapped (non-prelim): 556
length of query: 933
length of database: 14,973,337
effective HSP length: 108
effective length of query: 825
effective length of database: 8,214,913
effective search space: 6777303225
effective search space used: 6777303225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)