Query 002350
Match_columns 933
No_of_seqs 862 out of 6244
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 22:03:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002350.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002350hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5E-71 1.1E-75 694.2 49.2 583 29-844 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.3E-57 5E-62 570.4 42.3 516 195-844 70-588 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 8.2E-42 1.8E-46 345.4 -13.4 491 170-817 46-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 6.5E-37 1.4E-41 323.2 8.9 371 368-820 81-455 (873)
5 KOG4194 Membrane glycoprotein 100.0 1.6E-36 3.4E-41 320.3 9.6 363 222-616 82-448 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 3.6E-39 7.9E-44 326.3 -10.1 477 117-644 45-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 3.3E-35 7.2E-40 327.2 -1.9 313 308-644 106-420 (1081)
8 KOG0618 Serine/threonine phosp 100.0 7.1E-35 1.5E-39 324.6 -3.8 462 147-643 23-488 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 5.9E-33 1.3E-37 294.7 -1.6 347 292-650 7-357 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.2E-32 2.5E-37 292.5 -0.7 363 365-816 7-374 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.7E-27 3.7E-32 241.8 -0.9 421 359-814 61-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 5.1E-22 1.1E-26 250.0 25.7 338 361-791 554-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 2.9E-21 6.3E-26 243.1 26.1 342 284-642 550-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 1.3E-23 2.9E-28 213.7 -3.2 398 199-641 72-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 4.1E-21 8.8E-26 223.5 16.5 194 415-644 202-395 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 5.7E-21 1.2E-25 222.2 16.8 215 390-644 201-415 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 7.1E-19 1.5E-23 206.5 13.8 229 366-651 179-407 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.5E-18 3.3E-23 203.8 14.0 207 390-649 178-384 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 6E-19 1.3E-23 193.5 3.7 282 443-816 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 7.5E-18 1.6E-22 184.8 6.3 253 389-642 22-318 (319)
21 KOG0617 Ras suppressor protein 99.7 2.9E-18 6.2E-23 155.1 -2.7 171 551-804 25-196 (264)
22 KOG0617 Ras suppressor protein 99.6 1.4E-17 3E-22 150.6 -4.1 181 578-840 28-212 (264)
23 PLN03150 hypothetical protein; 99.6 7.3E-15 1.6E-19 172.7 11.8 117 733-849 419-537 (623)
24 PLN03150 hypothetical protein; 99.4 5.4E-13 1.2E-17 157.0 13.0 156 26-254 367-527 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 8.1E-14 1.8E-18 149.3 -1.5 103 538-644 77-179 (722)
26 COG4886 Leucine-rich repeat (L 99.2 2.6E-11 5.7E-16 136.8 8.0 122 516-641 97-219 (394)
27 KOG0532 Leucine-rich repeat (L 99.2 1.3E-12 2.8E-17 140.2 -3.0 189 443-641 79-270 (722)
28 COG4886 Leucine-rich repeat (L 99.1 6.7E-11 1.5E-15 133.5 7.4 200 539-823 96-296 (394)
29 KOG1909 Ran GTPase-activating 99.1 6.5E-12 1.4E-16 127.7 -1.9 42 114-155 27-68 (382)
30 KOG1259 Nischarin, modulator o 99.0 6.4E-11 1.4E-15 117.3 1.6 88 731-821 328-416 (490)
31 KOG3207 Beta-tubulin folding c 99.0 6.9E-11 1.5E-15 123.6 0.1 134 293-427 198-339 (505)
32 KOG3207 Beta-tubulin folding c 99.0 1E-10 2.2E-15 122.4 0.7 186 387-597 143-340 (505)
33 PF14580 LRR_9: Leucine-rich r 98.9 9.5E-10 2.1E-14 105.8 6.1 128 143-275 17-148 (175)
34 KOG1909 Ran GTPase-activating 98.9 1.7E-10 3.6E-15 117.6 0.8 88 557-644 211-311 (382)
35 PF14580 LRR_9: Leucine-rich r 98.9 9.8E-10 2.1E-14 105.7 3.2 130 165-325 15-149 (175)
36 KOG1259 Nischarin, modulator o 98.8 7.1E-10 1.5E-14 110.1 0.3 128 487-620 284-412 (490)
37 PF13855 LRR_8: Leucine rich r 98.8 3.5E-09 7.5E-14 83.6 3.7 60 757-816 2-61 (61)
38 PF13855 LRR_8: Leucine rich r 98.8 5.5E-09 1.2E-13 82.5 3.8 61 732-792 1-61 (61)
39 PF08263 LRRNT_2: Leucine rich 98.7 1.6E-08 3.4E-13 72.8 4.1 42 30-81 2-43 (43)
40 KOG4658 Apoptotic ATPase [Sign 98.7 1.3E-08 2.8E-13 122.5 5.7 106 146-253 546-653 (889)
41 KOG0531 Protein phosphatase 1, 98.7 2.1E-09 4.6E-14 121.4 -2.2 129 115-255 70-199 (414)
42 KOG0531 Protein phosphatase 1, 98.6 3E-09 6.6E-14 120.1 -1.5 85 734-821 234-322 (414)
43 KOG4658 Apoptotic ATPase [Sign 98.6 7.1E-08 1.5E-12 116.2 7.8 276 341-622 523-809 (889)
44 KOG2120 SCF ubiquitin ligase, 98.5 4.6E-09 9.9E-14 104.5 -3.8 180 118-327 186-374 (419)
45 KOG2982 Uncharacterized conser 98.5 3.7E-08 8.1E-13 98.1 1.3 65 339-403 197-262 (418)
46 KOG2120 SCF ubiquitin ligase, 98.4 7.3E-09 1.6E-13 103.1 -5.1 160 288-449 206-373 (419)
47 KOG1859 Leucine-rich repeat pr 98.4 9.7E-09 2.1E-13 113.7 -6.4 161 112-279 104-291 (1096)
48 KOG4579 Leucine-rich repeat (L 98.4 2.9E-08 6.4E-13 87.6 -2.4 88 733-823 78-165 (177)
49 COG5238 RNA1 Ran GTPase-activa 98.3 7.4E-08 1.6E-12 94.8 -0.6 66 339-404 212-286 (388)
50 KOG1859 Leucine-rich repeat pr 98.2 1.4E-07 3.1E-12 104.7 -3.2 126 488-620 165-292 (1096)
51 KOG4341 F-box protein containi 98.1 2.9E-07 6.3E-12 96.4 -3.0 84 145-228 138-226 (483)
52 COG5238 RNA1 Ran GTPase-activa 98.0 3.1E-06 6.8E-11 83.6 2.2 39 165-203 26-67 (388)
53 KOG4579 Leucine-rich repeat (L 98.0 6.9E-07 1.5E-11 79.1 -2.5 134 514-651 29-166 (177)
54 KOG2982 Uncharacterized conser 97.9 4.8E-06 1E-10 83.5 1.5 108 415-523 46-157 (418)
55 KOG3665 ZYG-1-like serine/thre 97.9 5.7E-06 1.2E-10 97.5 2.2 135 192-347 146-281 (699)
56 KOG3665 ZYG-1-like serine/thre 97.8 1.1E-05 2.3E-10 95.2 3.5 149 117-271 122-279 (699)
57 PRK15386 type III secretion pr 97.8 7.6E-05 1.6E-09 80.9 9.1 74 557-643 50-124 (426)
58 PF12799 LRR_4: Leucine Rich r 97.8 1.7E-05 3.7E-10 57.1 2.7 36 757-793 2-37 (44)
59 PF12799 LRR_4: Leucine Rich r 97.7 2.8E-05 6.1E-10 56.0 2.9 37 733-770 2-38 (44)
60 KOG4341 F-box protein containi 97.7 3.4E-06 7.3E-11 88.7 -3.5 130 485-614 318-459 (483)
61 PRK15386 type III secretion pr 97.5 0.00018 3.8E-09 78.2 7.1 138 459-618 48-188 (426)
62 KOG1644 U2-associated snRNP A' 97.5 0.0002 4.2E-09 68.4 5.9 85 558-644 41-126 (233)
63 KOG1644 U2-associated snRNP A' 97.3 0.00028 6.1E-09 67.4 5.1 106 146-254 43-152 (233)
64 PF13306 LRR_5: Leucine rich r 97.3 0.0005 1.1E-08 63.7 6.1 104 337-447 8-111 (129)
65 KOG2739 Leucine-rich acidic nu 97.1 0.00027 5.8E-09 70.7 2.0 66 140-205 60-127 (260)
66 PF13306 LRR_5: Leucine rich r 96.9 0.0027 5.9E-08 58.7 6.9 63 109-177 4-66 (129)
67 KOG2123 Uncharacterized conser 96.6 0.00018 3.9E-09 71.8 -3.5 100 144-248 18-123 (388)
68 KOG1947 Leucine rich repeat pr 96.4 0.0011 2.4E-08 77.1 1.5 111 144-254 187-307 (482)
69 KOG2739 Leucine-rich acidic nu 96.4 0.0021 4.6E-08 64.3 3.0 66 190-255 61-129 (260)
70 KOG2123 Uncharacterized conser 96.3 0.00018 3.9E-09 71.8 -5.4 102 115-224 17-123 (388)
71 KOG1947 Leucine rich repeat pr 96.2 0.0017 3.6E-08 75.7 0.9 239 114-377 185-439 (482)
72 PF00560 LRR_1: Leucine Rich R 95.7 0.0047 1E-07 36.9 1.0 18 782-800 2-19 (22)
73 PF00560 LRR_1: Leucine Rich R 95.4 0.0081 1.8E-07 35.9 1.2 20 758-778 2-21 (22)
74 KOG4308 LRR-containing protein 93.9 0.0012 2.7E-08 74.7 -9.0 36 147-182 89-128 (478)
75 KOG4308 LRR-containing protein 93.5 0.0011 2.4E-08 75.0 -10.2 193 117-331 87-305 (478)
76 KOG0473 Leucine-rich repeat pr 93.0 0.0064 1.4E-07 59.5 -4.3 83 732-817 42-124 (326)
77 PF13504 LRR_7: Leucine rich r 90.1 0.16 3.5E-06 28.1 1.0 11 782-792 3-13 (17)
78 KOG3864 Uncharacterized conser 89.3 0.076 1.6E-06 51.4 -1.1 32 148-179 104-135 (221)
79 smart00370 LRR Leucine-rich re 85.8 0.51 1.1E-05 29.4 1.5 13 781-793 3-15 (26)
80 smart00369 LRR_TYP Leucine-ric 85.8 0.51 1.1E-05 29.4 1.5 13 781-793 3-15 (26)
81 KOG0473 Leucine-rich repeat pr 85.2 0.023 4.9E-07 55.8 -7.2 87 165-255 38-124 (326)
82 smart00370 LRR Leucine-rich re 84.7 0.65 1.4E-05 28.9 1.6 15 756-770 2-16 (26)
83 smart00369 LRR_TYP Leucine-ric 84.7 0.65 1.4E-05 28.9 1.6 15 756-770 2-16 (26)
84 PF13516 LRR_6: Leucine Rich r 81.3 0.25 5.5E-06 30.1 -1.2 13 195-207 3-15 (24)
85 PF13516 LRR_6: Leucine Rich r 79.8 0.43 9.3E-06 29.0 -0.6 13 781-793 3-15 (24)
86 KOG3864 Uncharacterized conser 79.4 0.39 8.5E-06 46.6 -1.2 57 119-179 103-161 (221)
87 KOG4242 Predicted myosin-I-bin 73.5 19 0.00042 39.9 9.3 17 243-259 215-231 (553)
88 smart00365 LRR_SD22 Leucine-ri 72.9 2.7 5.8E-05 26.2 1.6 15 779-793 1-15 (26)
89 KOG4242 Predicted myosin-I-bin 70.2 41 0.0009 37.4 10.8 35 316-350 354-389 (553)
90 smart00364 LRR_BAC Leucine-ric 59.2 6.3 0.00014 24.6 1.3 13 781-793 3-15 (26)
91 smart00368 LRR_RI Leucine rich 56.8 5.9 0.00013 25.1 1.0 14 195-208 3-16 (28)
92 KOG3763 mRNA export factor TAP 42.0 22 0.00047 40.4 3.1 14 365-378 270-283 (585)
93 TIGR00864 PCC polycystin catio 36.3 19 0.00042 48.9 1.9 32 762-793 1-32 (2740)
94 KOG3763 mRNA export factor TAP 34.1 27 0.00059 39.7 2.3 18 339-356 216-233 (585)
95 smart00367 LRR_CC Leucine-rich 30.6 29 0.00063 21.4 1.1 9 196-204 4-12 (26)
96 PF13260 DUF4051: Protein of u 29.4 48 0.001 23.7 2.0 35 10-44 3-44 (54)
97 PF12273 RCR: Chitin synthesis 27.9 30 0.00066 31.7 1.2 15 891-905 10-24 (130)
98 TIGR00864 PCC polycystin catio 24.2 42 0.0009 46.0 1.9 32 738-769 1-32 (2740)
99 PF15102 TMEM154: TMEM154 prot 23.9 87 0.0019 29.0 3.3 28 882-909 59-87 (146)
100 PF07204 Orthoreo_P10: Orthore 21.9 49 0.0011 27.8 1.2 29 880-908 41-69 (98)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5e-71 Score=694.20 Aligned_cols=583 Identities=33% Similarity=0.522 Sum_probs=415.1
Q ss_pred hHHHHHHHHHhhhhcccccccccCCCCCCCCCCCCCCCCCCCCCcccceeEecCCCCcEEEEecCCCCCCCCCCCCcccc
Q 002350 29 LETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLL 108 (933)
Q Consensus 29 ~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~~~C~w~gv~c~~~~~~V~~l~l~~~~~l~l~~~~~~~~ 108 (933)
.++|++||++||+++.++ .+.+++| +.. .+||.|.||+|+. .++|+.|++++... +
T Consensus 27 ~~~~~~~l~~~~~~~~~~------~~~~~~w-~~~------~~~c~w~gv~c~~-~~~v~~L~L~~~~i---~------- 82 (968)
T PLN00113 27 HAEELELLLSFKSSINDP------LKYLSNW-NSS------ADVCLWQGITCNN-SSRVVSIDLSGKNI---S------- 82 (968)
T ss_pred CHHHHHHHHHHHHhCCCC------cccCCCC-CCC------CCCCcCcceecCC-CCcEEEEEecCCCc---c-------
Confidence 568999999999998533 4578999 654 6899999999985 57899888876542 1
Q ss_pred cccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhc-CCCCCCEEecCCCcccCccCh
Q 002350 109 NMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLN-TLPSLCTLILHWNRIEGSQTN 187 (933)
Q Consensus 109 ~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~ 187 (933)
+..+ ..+..+++|++|+|++|.+.+.+|..+. .+++|++|+|++|.+++..|
T Consensus 83 ----------------------~~~~----~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p- 135 (968)
T PLN00113 83 ----------------------GKIS----SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP- 135 (968)
T ss_pred ----------------------ccCC----hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC-
Confidence 2222 3344555555555555555544444433 56666666666666655544
Q ss_pred hhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCC
Q 002350 188 QGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHS 267 (933)
Q Consensus 188 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 267 (933)
.+.+++|++|+|++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.
T Consensus 136 --~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~---------- 203 (968)
T PLN00113 136 --RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ---------- 203 (968)
T ss_pred --ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc----------
Confidence 23456666666666666666666666666666666666666666666666666666666666655432
Q ss_pred CCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEE
Q 002350 268 KLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLL 347 (933)
Q Consensus 268 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ 347 (933)
+|..+.++++|++|++++|.+.+.+|..+. .+
T Consensus 204 ----------------------------------------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l------- 235 (968)
T PLN00113 204 ----------------------------------------IPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GL------- 235 (968)
T ss_pred ----------------------------------------CChHHcCcCCccEEECcCCccCCcCChhHh-cC-------
Confidence 334444555555556655555555554332 22
Q ss_pred cCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCC
Q 002350 348 LKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFS 427 (933)
Q Consensus 348 L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 427 (933)
++|++|++++|.+++.+|..+. .+++|++|++++|.+.+.+|..+..+++|++|++++|.+.
T Consensus 236 -----------------~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 236 -----------------TSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred -----------------CCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 2333333334444334444443 2566666666666666556655555555555555555555
Q ss_pred CCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhH
Q 002350 428 GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWM 507 (933)
Q Consensus 428 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 507 (933)
+.+ |..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+
T Consensus 298 ~~~-------------------------p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 298 GEI-------------------------PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred cCC-------------------------ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 444 4444445555555555555555555555556666666666666666666666
Q ss_pred hhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCcc
Q 002350 508 GNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLV 586 (933)
Q Consensus 508 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 586 (933)
+.+.. |+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+ .+++|+.|++++|++++.+|..+..+++|+
T Consensus 353 ~~~~~-L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 431 (968)
T PLN00113 353 GKHNN-LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY 431 (968)
T ss_pred hCCCC-CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCC
Confidence 65554 6666666666666666666666677777777777776666665 677777777777777777888888888888
Q ss_pred EEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccC
Q 002350 587 TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLN 666 (933)
Q Consensus 587 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~ 666 (933)
.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|+++|.+|..+.++
T Consensus 432 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l------------ 498 (968)
T PLN00113 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL------------ 498 (968)
T ss_pred EEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh------------
Confidence 99999999888888888888999999999999988888765 45889999999999999888776543
Q ss_pred CCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCC
Q 002350 667 GSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTG 746 (933)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g 746 (933)
++|+.|||++|+++|
T Consensus 499 -----------------------------------------------------------------~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 499 -----------------------------------------------------------------SELMQLKLSENKLSG 513 (968)
T ss_pred -----------------------------------------------------------------hccCEEECcCCccee
Confidence 356779999999999
Q ss_pred CCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCCCcC
Q 002350 747 EIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQF 826 (933)
Q Consensus 747 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~ 826 (933)
.+|..++.+++|++|+|++|.++|.+|..|+++++|+.|||++|+++|.+|..+..+++|+++++++|+++|.+|..++|
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~ 593 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF 593 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCcccccCCCCCCCcc
Q 002350 827 ATFDESSYRGNPSLCAWL 844 (933)
Q Consensus 827 ~~~~~~~~~gN~~lc~~~ 844 (933)
.++...++.||+.+|+.+
T Consensus 594 ~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 594 LAINASAVAGNIDLCGGD 611 (968)
T ss_pred cccChhhhcCCccccCCc
Confidence 999999999999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.3e-57 Score=570.43 Aligned_cols=516 Identities=32% Similarity=0.542 Sum_probs=421.2
Q ss_pred CCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhcc-CCCCCCEEECCCCcCCCCCChhhhhcCCCCceEe
Q 002350 195 NLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVIS-NLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 273 (933)
Q Consensus 195 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 273 (933)
+++.|+|++|.+.+.++..+..+++|++|+|++|++++.+|..+. .+++|++|++++|.+++.+|.
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~------------- 136 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR------------- 136 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-------------
Confidence 455555555555555555666666666666666666665555443 666666666666666655442
Q ss_pred cccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCC
Q 002350 274 LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSF 353 (933)
Q Consensus 274 L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l 353 (933)
..+++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..+. ++++
T Consensus 137 ---------------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~----------- 189 (968)
T PLN00113 137 ---------------GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTS----------- 189 (968)
T ss_pred ---------------cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-hCcC-----------
Confidence 1123344555555555555666666777777777777776666665543 4444
Q ss_pred cCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchh
Q 002350 354 SGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQS 433 (933)
Q Consensus 354 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~ 433 (933)
|++|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..
T Consensus 190 -------------L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 255 (968)
T PLN00113 190 -------------LEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255 (968)
T ss_pred -------------CCeeeccCCCCcCcCChHHc-CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence 44555555555555666554 3677777777777777777777777778888888888777666654
Q ss_pred hhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccc
Q 002350 434 VVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSE 513 (933)
Q Consensus 434 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~ 513 (933)
+ ..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++.
T Consensus 256 l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~- 333 (968)
T PLN00113 256 L-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR- 333 (968)
T ss_pred H-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCC-
Confidence 3 57788888888888888888888889999999999999999999999999999999999999999999999999887
Q ss_pred cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcC
Q 002350 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 592 (933)
Q Consensus 514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 592 (933)
|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+ .+++|+.|++++|++.+.+|..+..+++|+.|++++
T Consensus 334 L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~ 413 (968)
T PLN00113 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413 (968)
T ss_pred CCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC
Confidence 9999999999999999999999999999999999999988887 889999999999999999999999999999999999
Q ss_pred CcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCC
Q 002350 593 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNS 672 (933)
Q Consensus 593 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~ 672 (933)
|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.|.+|..+.
T Consensus 414 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-------------------- 473 (968)
T PLN00113 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-------------------- 473 (968)
T ss_pred CEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc--------------------
Confidence 999999999999999999999999999999999999999999999999999988876432
Q ss_pred CCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhh
Q 002350 673 PELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI 752 (933)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 752 (933)
..+|+.||+++|+++|.+|..+
T Consensus 474 ----------------------------------------------------------~~~L~~L~ls~n~l~~~~~~~~ 495 (968)
T PLN00113 474 ----------------------------------------------------------SKRLENLDLSRNQFSGAVPRKL 495 (968)
T ss_pred ----------------------------------------------------------cccceEEECcCCccCCccChhh
Confidence 1357889999999999999999
Q ss_pred hhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCC-CcCCccCc
Q 002350 753 GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-GQFATFDE 831 (933)
Q Consensus 753 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~~~~~~ 831 (933)
+.+++|+.|+|++|++++.+|..++++++|++|+|++|+++|.+|..+..+++|+.||+++|+++|.+|.. ..+..+..
T Consensus 496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976 45566777
Q ss_pred ccccCCCCCCCcc
Q 002350 832 SSYRGNPSLCAWL 844 (933)
Q Consensus 832 ~~~~gN~~lc~~~ 844 (933)
..+.+|+..+..|
T Consensus 576 l~ls~N~l~~~~p 588 (968)
T PLN00113 576 VNISHNHLHGSLP 588 (968)
T ss_pred EeccCCcceeeCC
Confidence 7888898766433
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.2e-42 Score=345.43 Aligned_cols=491 Identities=27% Similarity=0.363 Sum_probs=331.4
Q ss_pred CCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEEC
Q 002350 170 SLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDL 249 (933)
Q Consensus 170 ~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 249 (933)
-|+.|++++|.+....+ .+.++..|.+|++.+|++.. .|.+++.+..++.++.++|+++ .+|+.++.+.+|+.+++
T Consensus 46 ~l~~lils~N~l~~l~~--dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRE--DLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchhhccH--hhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 34444555554443322 45566666666666666655 4556677777777777777776 56667777777777777
Q ss_pred CCCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCc
Q 002350 250 SHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLV 329 (933)
Q Consensus 250 ~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 329 (933)
++|.+.. +|+.++.+..+..++..+|+++
T Consensus 122 s~n~~~e---------------------------------------------------l~~~i~~~~~l~dl~~~~N~i~ 150 (565)
T KOG0472|consen 122 SSNELKE---------------------------------------------------LPDSIGRLLDLEDLDATNNQIS 150 (565)
T ss_pred cccceee---------------------------------------------------cCchHHHHhhhhhhhccccccc
Confidence 7776542 3334444555555566666665
Q ss_pred ccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCcccc
Q 002350 330 GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS 409 (933)
Q Consensus 330 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 409 (933)
..|..++ .+.++..+++.+|++....+... .++.|++||...|.+. .+|+.++. +.+|..|++..|++. ..| .
T Consensus 151 -slp~~~~-~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-e 223 (565)
T KOG0472|consen 151 -SLPEDMV-NLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-FLP-E 223 (565)
T ss_pred -cCchHHH-HHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-cCC-C
Confidence 4555544 45555555555555555432222 2566666666666665 77777764 777777788887776 455 6
Q ss_pred ccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCC
Q 002350 410 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSL 489 (933)
Q Consensus 410 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 489 (933)
|..+..|+++.++.|++. .+|++....++++.+||+.+|++. +.|..+.-+++|+.||+++|.++ ..|..++++ .|
T Consensus 224 f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 224 FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HL 299 (565)
T ss_pred CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-ee
Confidence 777788888888888776 777777777888888888888877 45667777777888888888887 567777777 77
Q ss_pred CEEEccCCcCCCCChhhHhhhcc--ccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEee
Q 002350 490 QVLDISNNMLSGHIPHWMGNFSS--ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQ 567 (933)
Q Consensus 490 ~~L~Ls~n~l~~~~p~~l~~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~ 567 (933)
+.|.+.+|++. .+-..+-.... -|++|.= .+....+..-.+ .+-..- -...+..|......+.+.|+++
T Consensus 300 ~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs---~~~~dglS~se~-~~e~~~----t~~~~~~~~~~~~i~tkiL~~s 370 (565)
T KOG0472|consen 300 KFLALEGNPLR-TIRREIISKGTQEVLKYLRS---KIKDDGLSQSEG-GTETAM----TLPSESFPDIYAIITTKILDVS 370 (565)
T ss_pred eehhhcCCchH-HHHHHHHcccHHHHHHHHHH---hhccCCCCCCcc-cccccC----CCCCCcccchhhhhhhhhhccc
Confidence 88888888775 33333322111 1222211 011000000000 000000 0111223333356778888888
Q ss_pred cCcCcccCchhhccCCC---ccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCC
Q 002350 568 KNALNGLIPGELFRSCK---LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 644 (933)
Q Consensus 568 ~n~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 644 (933)
+-+++ .+|...+.... ....+++.|++. ++|..+..+..+.+.-+..|+..+.+|..++.+++|..|++++|.+.
T Consensus 371 ~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln 448 (565)
T KOG0472|consen 371 DKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN 448 (565)
T ss_pred ccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh
Confidence 88887 45665554443 788999999998 78988887777765544444444588999999999999999988886
Q ss_pred CCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhcccee
Q 002350 645 GSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE 724 (933)
Q Consensus 645 g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 724 (933)
.+|..++.+
T Consensus 449 -~LP~e~~~l---------------------------------------------------------------------- 457 (565)
T KOG0472|consen 449 -DLPEEMGSL---------------------------------------------------------------------- 457 (565)
T ss_pred -hcchhhhhh----------------------------------------------------------------------
Confidence 677665543
Q ss_pred eecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCC
Q 002350 725 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN 804 (933)
Q Consensus 725 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 804 (933)
..|+.||+|+|+|. .+|+.+..+..++.+-.++|++....|+.+.+|.+|.+|||.+|.+. .||+.+++++
T Consensus 458 -------v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt 528 (565)
T KOG0472|consen 458 -------VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT 528 (565)
T ss_pred -------hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc
Confidence 24778999999998 89999998889999988999999888888999999999999999998 8899999999
Q ss_pred CCCeEEccCCcCc
Q 002350 805 FLSIFNVSYNNLS 817 (933)
Q Consensus 805 ~L~~L~ls~N~l~ 817 (933)
+|+.|++++|++.
T Consensus 529 nL~hLeL~gNpfr 541 (565)
T KOG0472|consen 529 NLRHLELDGNPFR 541 (565)
T ss_pred ceeEEEecCCccC
Confidence 9999999999997
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.5e-37 Score=323.24 Aligned_cols=371 Identities=23% Similarity=0.273 Sum_probs=263.5
Q ss_pred cEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECc
Q 002350 368 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 447 (933)
Q Consensus 368 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 447 (933)
+.|++++|.+. .+....+..+++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+ ++..+....++.|+.|||+
T Consensus 81 ~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhh
Confidence 44666666665 344444445666666666666665 55554444455666666666666 4444445566666667777
Q ss_pred CCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCC
Q 002350 448 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN 527 (933)
Q Consensus 448 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~ 527 (933)
.|.++.+....|..-.++++|+|++|+|+..-...|..+.+|..|.|++|+++..-+..+.+++. |+.|+|..|++.-.
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~-L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK-LESLDLNRNRIRIV 236 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch-hhhhhccccceeee
Confidence 66666655555655566777777777777666666777777777777777777333344444666 77777777777643
Q ss_pred cchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcC
Q 002350 528 VPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH 606 (933)
Q Consensus 528 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 606 (933)
--..|.++++|+.|.+..|.+...-...| .+.++++|+|+.|++...-..++.++++|+.|++|+|.|...-++.+..+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 34567888888888888888877776666 78888888888888887777888888888888888888887778888888
Q ss_pred CCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCC
Q 002350 607 SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGN 686 (933)
Q Consensus 607 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (933)
++|++|+|++|+++...+++|..+..|+.|.|++|+++..-...|
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af----------------------------------- 361 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF----------------------------------- 361 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH-----------------------------------
Confidence 888888888888888778888888888888888888762111111
Q ss_pred CCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCCh---hhhhccccCeeec
Q 002350 687 NRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPS---DIGQLQAILALNL 763 (933)
Q Consensus 687 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~---~l~~l~~L~~L~L 763 (933)
..+++|+.|||++|.+++.|-+ .|..|++|+.|+|
T Consensus 362 ------------------------------------------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 362 ------------------------------------------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred ------------------------------------------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence 1234677788888888765543 4666888888888
Q ss_pred cccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccC
Q 002350 764 SNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRT 820 (933)
Q Consensus 764 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~ 820 (933)
.+|++..+...+|.++.+||+|||-+|.|..+-|.+|..+ .|+.|-+..-.+-+.+
T Consensus 400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred cCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence 8888887667788888888888888888888888888888 7777777655554443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-36 Score=320.34 Aligned_cols=363 Identities=24% Similarity=0.247 Sum_probs=293.8
Q ss_pred EEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccC
Q 002350 222 ILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTK 301 (933)
Q Consensus 222 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~ 301 (933)
.||+++|.++...+..|.++++|+.+++.+|.++ .+|. + .....+++.|+|.+
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--f------------------------~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--F------------------------GHESGHLEKLDLRH 134 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--c------------------------cccccceeEEeeec
Confidence 4555555555555555555555555555555554 2221 0 01122355555555
Q ss_pred CCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCC
Q 002350 302 CNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKL 381 (933)
Q Consensus 302 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 381 (933)
|.++..-.+.+.-++.|+.||||.|.++ .+|..-+..-.++++|+|++|+|+.+....|..+.+|..|.|+.|+++ .+
T Consensus 135 N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tL 212 (873)
T KOG4194|consen 135 NLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TL 212 (873)
T ss_pred cccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-cc
Confidence 5555555567778888999999999988 666654545568999999999999998888999999999999999999 89
Q ss_pred ChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcc
Q 002350 382 PHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMN 461 (933)
Q Consensus 382 p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 461 (933)
|...|+.+++|+.|+|..|.+.-.--..|.++++|+.|.+.+|.+. .+....|.++.++++|+|+.|++...-..++.+
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccc
Confidence 9999888999999999999987544667899999999999999998 677788889999999999999999888888889
Q ss_pred cCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEE
Q 002350 462 LTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRIL 541 (933)
Q Consensus 462 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 541 (933)
++.|+.|++++|.|...-++++...++|++|+|++|+++..-+..+..+.. |++|+|++|++...-...|..+++|+.|
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~-Le~LnLs~Nsi~~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ-LEELNLSHNSIDHLAEGAFVGLSSLHKL 370 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH-hhhhcccccchHHHHhhHHHHhhhhhhh
Confidence 999999999999999888888888999999999999999666667777766 9999999999987777789999999999
Q ss_pred EccCCcCccccCcc---c-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCC
Q 002350 542 DISENRLSGPIASS---L-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 616 (933)
Q Consensus 542 ~Ls~n~l~~~~~~~---~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 616 (933)
||++|.++..+... + ++++|+.|++.+|++..+...+|.+++.|++|||.+|.|..+-|++|..+ .|++|.+..
T Consensus 371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 99999998765543 3 78899999999999987777888999999999999999988888888887 888887654
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.6e-39 Score=326.29 Aligned_cols=477 Identities=25% Similarity=0.354 Sum_probs=377.5
Q ss_pred CCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCC
Q 002350 117 EELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNL 196 (933)
Q Consensus 117 ~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L 196 (933)
..|+.|++++|.+.... +.+.++..|.+|++++|++. ..|.+++.+..++.|+.++|++... | ..+..+.+|
T Consensus 45 v~l~~lils~N~l~~l~-----~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~l-p-~~i~s~~~l 116 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLR-----EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSEL-P-EQIGSLISL 116 (565)
T ss_pred cchhhhhhccCchhhcc-----HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhc-c-HHHhhhhhh
Confidence 35788999999876433 56888999999999999987 5677888999999999999988744 3 468888889
Q ss_pred CEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEeccc
Q 002350 197 FEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLST 276 (933)
Q Consensus 197 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~ 276 (933)
+.++.++|.+.. +|+.++.+..|+.++..+|+++ ..|..+.++.+|..+++.+|.+.. .|...+. +
T Consensus 117 ~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~-m---------- 182 (565)
T KOG0472|consen 117 VKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIA-M---------- 182 (565)
T ss_pred hhhhccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHH-H----------
Confidence 999999988876 6677888888999998888888 678888888888889998888873 3323222 3
Q ss_pred ccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCc
Q 002350 277 RNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI 356 (933)
Q Consensus 277 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 356 (933)
+.|++|+...|-++ .+|+.++.+.+|..|+|.+|++. .+|+ |.+|..|.+++++.|.+..+
T Consensus 183 ---------------~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~l 243 (565)
T KOG0472|consen 183 ---------------KRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEML 243 (565)
T ss_pred ---------------HHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhh
Confidence 34555666666555 78999999999999999999998 7884 34899999999999999887
Q ss_pred CcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhc
Q 002350 357 LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 436 (933)
Q Consensus 357 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 436 (933)
+......++++..||+.+|+++ +.|++++. +.+|++||+++|.++ ..|.+++++ .|+.|-+.+|.+. .+-.++..
T Consensus 244 pae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~ 318 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIIS 318 (565)
T ss_pred HHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHc
Confidence 5555568899999999999998 89999975 899999999999998 678899999 9999999999886 34333322
Q ss_pred CCC--CCCEE-------ECcCCcC--------CCcCchhhcccCcCCeEEccCccccccccccccCCC---CCCEEEccC
Q 002350 437 GCF--SLELL-------DLSNNNF--------EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSST---SLQVLDISN 496 (933)
Q Consensus 437 ~l~--~L~~L-------~Ls~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~---~L~~L~Ls~ 496 (933)
+-+ -|++| .++...= ............+.+.|++++-+++ .+|+...... -....++++
T Consensus 319 ~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~Vnfsk 397 (565)
T KOG0472|consen 319 KGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSK 397 (565)
T ss_pred ccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEeccc
Confidence 111 01111 1111100 0011112234567889999999998 5565443333 378899999
Q ss_pred CcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCc
Q 002350 497 NMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIP 576 (933)
Q Consensus 497 n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p 576 (933)
|++. ++|..+..+..-.+.+.+++|.+. -+|..++.+++|..|++++|.+...+.+.+.+..|+.|+++.|++. .+|
T Consensus 398 NqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP 474 (565)
T KOG0472|consen 398 NQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLP 474 (565)
T ss_pred chHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cch
Confidence 9998 899888887774455666666655 7888999999999999999988766656668888999999999997 678
Q ss_pred hhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCC
Q 002350 577 GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 644 (933)
Q Consensus 577 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 644 (933)
........++.+-.++|++....|..+.++.+|++|||.+|.+. .+|..+++|++|++|++.+|+|.
T Consensus 475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 88888888999999999999777777999999999999999998 78999999999999999999997
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-35 Score=327.16 Aligned_cols=313 Identities=26% Similarity=0.282 Sum_probs=149.6
Q ss_pred CchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhh
Q 002350 308 YPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGV 387 (933)
Q Consensus 308 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 387 (933)
.|..+..+.+|+.|+++.|.+. .+|..+. .+..++.+..++|..... ++.. .++.+++..|.+.+.++.++..
T Consensus 106 lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~~----lg~~-~ik~~~l~~n~l~~~~~~~i~~ 178 (1081)
T KOG0618|consen 106 LPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQR----LGQT-SIKKLDLRLNVLGGSFLIDIYN 178 (1081)
T ss_pred CchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhhh----hccc-cchhhhhhhhhcccchhcchhh
Confidence 4555555666666666666665 5555544 455555555665511110 1111 1566666666666666665542
Q ss_pred cCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCe
Q 002350 388 ILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRH 467 (933)
Q Consensus 388 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 467 (933)
+.. .|+|.+|.+. -..+..+.+|+.|....|++. .+. -.-++|+.|+.++|.++...+. ....+|++
T Consensus 179 -l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~ 245 (1081)
T KOG0618|consen 179 -LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQY 245 (1081)
T ss_pred -hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeeccc--ccccccee
Confidence 333 4777777654 123445666666666666654 111 1234555666666655522211 12334555
Q ss_pred EEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCc
Q 002350 468 LYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 547 (933)
Q Consensus 468 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 547 (933)
++++.|+++ .+|.++..+.+|+.++..+|.++ .+|..+....+ |+.|.+..|.+. .+|.....++.|++|+|..|+
T Consensus 246 ~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~-L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 246 LDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITS-LVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred eecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhh-HHHHHhhhhhhh-hCCCcccccceeeeeeehhcc
Confidence 555555555 33455555555555555555553 45555544444 555555555555 344444445555555555555
Q ss_pred CccccCccc-c-CCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCch
Q 002350 548 LSGPIASSL-N-LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPD 625 (933)
Q Consensus 548 l~~~~~~~~-~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 625 (933)
+....+..+ . ..+|+.|..+.|++.......=...+.|+.|.+.+|.++...-..+.+.+.|+.|+|++|++......
T Consensus 322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas 401 (1081)
T KOG0618|consen 322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS 401 (1081)
T ss_pred ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence 543333222 1 11244444444444322111111223344444444444433333344444444444444444432223
Q ss_pred hhhcCCCCCEEEccCCcCC
Q 002350 626 QLCQLQKLAMMDLSRNKFS 644 (933)
Q Consensus 626 ~l~~l~~L~~L~Ls~N~l~ 644 (933)
.+.++..|+.|+||+|+++
T Consensus 402 ~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 402 KLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred HHhchHHhHHHhcccchhh
Confidence 3444444444444444444
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=7.1e-35 Score=324.57 Aligned_cols=462 Identities=30% Similarity=0.377 Sum_probs=315.3
Q ss_pred CCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEcc
Q 002350 147 LKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDIS 226 (933)
Q Consensus 147 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 226 (933)
++.|+++.|.+-..+...+.+..+|+.||+++|++... | ..++.+.+|+.|+++.|.|.. .|.+..++.+|++|.|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~f-p-~~it~l~~L~~ln~s~n~i~~-vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSF-P-IQITLLSHLRQLNLSRNYIRS-VPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccC-C-chhhhHHHHhhcccchhhHhh-Cchhhhhhhcchhheec
Confidence 44444444443332233333333344444444444322 1 234444555555555554443 33444455555555555
Q ss_pred CCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCC
Q 002350 227 SNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNG 306 (933)
Q Consensus 227 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 306 (933)
.|.+. ..|..+..+++|++|++++|.+. .+| ..+..+..++.+..++|..+.... -..++.+++..+.+.+
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N~~~~~lg------~~~ik~~~l~~n~l~~ 170 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIP-LVIEVLTAEEELAASNNEKIQRLG------QTSIKKLDLRLNVLGG 170 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCc-hhHHhhhHHHHHhhhcchhhhhhc------cccchhhhhhhhhccc
Confidence 55444 44555555555555555555543 233 233334444444444331111111 1126677777887877
Q ss_pred CCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhh
Q 002350 307 SYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMG 386 (933)
Q Consensus 307 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 386 (933)
.++..+..+.+ .|+|++|.+. ... ...+++|+.+....|++..+.. .-++|+.|+.+.|.++...+..
T Consensus 171 ~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~p-- 238 (1081)
T KOG0618|consen 171 SFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVHP-- 238 (1081)
T ss_pred chhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeecccc--
Confidence 77777776666 6999999876 222 2377889999999998876532 4567899999999987332222
Q ss_pred hcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCC
Q 002350 387 VILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLR 466 (933)
Q Consensus 387 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 466 (933)
...+|++++++.|.++ .+|.+++.+.+|+.++..+|.++ .+|..++ ...+|+.|.+..|.+.. +|......++|+
T Consensus 239 -~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~-~~~~L~~l~~~~nel~y-ip~~le~~~sL~ 313 (1081)
T KOG0618|consen 239 -VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRIS-RITSLVSLSAAYNELEY-IPPFLEGLKSLR 313 (1081)
T ss_pred -ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHh-hhhhHHHHHhhhhhhhh-CCCcccccceee
Confidence 2578999999999998 56799999999999999999996 7777664 67789999999998875 455566789999
Q ss_pred eEEccCccccccccccc-cCCC-CCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEcc
Q 002350 467 HLYFENNNFSGKIKDGL-LSST-SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDIS 544 (933)
Q Consensus 467 ~L~L~~n~l~~~~~~~l-~~l~-~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 544 (933)
+|+|..|++. ..|+.+ .... +|..|..+.|++. ..|..=....+.|+.|++.+|.++...-..+.+.+.|+.|+|+
T Consensus 314 tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 314 TLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS 391 (1081)
T ss_pred eeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence 9999999998 444433 3333 3777888888886 4453322333349999999999998888889999999999999
Q ss_pred CCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCC
Q 002350 545 ENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPI 623 (933)
Q Consensus 545 ~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 623 (933)
+|++.......+ ++..|++|+|++|+++ .+|.....+..|++|...+|++. .+| .+..++.|+.+|++.|+++...
T Consensus 392 yNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 392 YNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred ccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhh
Confidence 999976666666 8999999999999998 56899999999999999999998 788 7888999999999999998553
Q ss_pred -chhhhcCCCCCEEEccCCcC
Q 002350 624 -PDQLCQLQKLAMMDLSRNKF 643 (933)
Q Consensus 624 -p~~l~~l~~L~~L~Ls~N~l 643 (933)
|... .-++|++||+++|.-
T Consensus 469 l~~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 469 LPEAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhC-CCcccceeeccCCcc
Confidence 3333 238999999999984
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=5.9e-33 Score=294.66 Aligned_cols=347 Identities=26% Similarity=0.370 Sum_probs=286.4
Q ss_pred CcceEEEccCCCCC-CCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEE
Q 002350 292 SQLIVLGLTKCNLN-GSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHL 370 (933)
Q Consensus 292 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 370 (933)
+-.+-.++++|.++ +.+|....++++++.|.|...++. .+|+.+. .+.+|+.|.+++|++..+. ..++.++.|+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~-~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv 83 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELS-RLQKLEHLSMAHNQLISVH-GELSDLPRLRSV 83 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHH-HHhhhhhhhhhhhhhHhhh-hhhccchhhHHH
Confidence 34456788899998 578999999999999999999997 8999886 8999999999999988763 446788999999
Q ss_pred EccCCcCCC-CCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCC
Q 002350 371 DISCNNFRG-KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 449 (933)
Q Consensus 371 ~Ls~n~l~~-~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 449 (933)
++..|++.. -+|..+|. +..|+.||||+|++. +.|..+...+++-+|+||+|+|. .||..+|.++..|-.|||++|
T Consensus 84 ~~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred hhhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence 999999864 48888986 999999999999998 78999999999999999999998 899999999999999999999
Q ss_pred cCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCC-CCChhhHhhhccccceeecCCCcCCCCc
Q 002350 450 NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS-GHIPHWMGNFSSELEILSMSKNHLEGNV 528 (933)
Q Consensus 450 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~~~~~L~~L~L~~n~l~~~~ 528 (933)
++. ..|+.+..+..|++|+|++|.+.-..-..+-.+++|++|.+++.+-+ ..+|.++..+.. |..++++.|.+. ..
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N-L~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN-LRDVDLSENNLP-IV 237 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhh-hhhccccccCCC-cc
Confidence 997 56777888999999999999887544455666788889999886543 467888888776 999999999998 78
Q ss_pred chhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcc-cCchhhhcCC
Q 002350 529 PVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG-RIPHQINEHS 607 (933)
Q Consensus 529 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~ 607 (933)
|+.+.++++|+.|+||+|+++......-...+|++|++++|+++ .+|..+.++++|+.|.+.+|+++- -+|..++.+.
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 99999999999999999998765443335667888888888886 567888888888888888887762 3677788888
Q ss_pred CccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCch
Q 002350 608 NLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPC 650 (933)
Q Consensus 608 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~ 650 (933)
+|+++..++|.+. ..|+.++.|..|+.|.|++|++. .+|+.
T Consensus 317 ~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPea 357 (1255)
T KOG0444|consen 317 QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEA 357 (1255)
T ss_pred hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhh
Confidence 8888888777776 67777887777777777777765 44443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.2e-32 Score=292.47 Aligned_cols=363 Identities=24% Similarity=0.390 Sum_probs=208.4
Q ss_pred CCccEEEccCCcCC-CCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCE
Q 002350 365 DFLHHLDISCNNFR-GKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLEL 443 (933)
Q Consensus 365 ~~L~~L~Ls~n~l~-~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 443 (933)
+..+-+|+++|.++ +..|..+.. ++.++.|.|...++. .+|..++.+.+|++|.+++|++. .+... .+.++.|+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhhHH
Confidence 34455556666655 345555543 666666666666555 56666666666666666666654 22222 245566666
Q ss_pred EECcCCcCCC-cCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCC
Q 002350 444 LDLSNNNFEG-QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN 522 (933)
Q Consensus 444 L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n 522 (933)
+++.+|++.. -+|..+..+..|+.|||++|++. ..|..+...+++-+|+|++|+|. .||..++-....|-.|+|++|
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence 6666665542 24445556666666666666666 55666666666666666666665 555544332222666666666
Q ss_pred cCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCc-ccCchhhccCCCccEEeCcCCcCcccCc
Q 002350 523 HLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALN-GLIPGELFRSCKLVTLNLRDNTFSGRIP 600 (933)
Q Consensus 523 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 600 (933)
++. .+|..+..+..|++|+|++|.+.-..-..+ .+++|++|.+++.+-+ .-+|.++..+.+|..+|+|.|.+. ..|
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 666 455566666666666666666543221222 4556666666654321 235666666666666677766666 566
Q ss_pred hhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhh
Q 002350 601 HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIE 680 (933)
Q Consensus 601 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 680 (933)
+.+-++++|+.|+|++|+++ .+........+|++|++|+|+++ .+|+++..++
T Consensus 239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~------------------------- 291 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT------------------------- 291 (1255)
T ss_pred HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhH-------------------------
Confidence 66666666677777777666 34444555566666667777666 5666555443
Q ss_pred cccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCC-CCChhhhhccccC
Q 002350 681 FGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTG-EIPSDIGQLQAIL 759 (933)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~ 759 (933)
.|+.|.+.+|+++- -||..||.|..|+
T Consensus 292 ----------------------------------------------------kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 292 ----------------------------------------------------KLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred ----------------------------------------------------HHHHHHhccCcccccCCccchhhhhhhH
Confidence 23334444454432 2555555555555
Q ss_pred eeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcC
Q 002350 760 ALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL 816 (933)
Q Consensus 760 ~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 816 (933)
++..++|.+. ..|+++..+..|+.|.|++|++. .+|+.+.-|+.|+.||+..|+-
T Consensus 320 vf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 320 VFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred HHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 5555555555 55555555555555555555555 4555555555555555555543
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=1.7e-27 Score=241.83 Aligned_cols=421 Identities=19% Similarity=0.202 Sum_probs=282.2
Q ss_pred CCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCC-CcCCCCcchhhhcC
Q 002350 359 LPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSR-NYFSGGLSQSVVTG 437 (933)
Q Consensus 359 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~ 437 (933)
+|..-.+.-.+++|..|+|+ .+|+..|..+++|+.|||++|.|+.+-|.+|..+++|..|.+.+ |+|+ .+|...|.+
T Consensus 61 VP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~g 138 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGG 138 (498)
T ss_pred CcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhh
Confidence 44444455678888899988 88888888899999999999999999999999999998888877 7887 899999999
Q ss_pred CCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCC------------CChh
Q 002350 438 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG------------HIPH 505 (933)
Q Consensus 438 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~------------~~p~ 505 (933)
+.+|+.|.+.-|++.-.....|..++++..|.+.+|.+...-...+..+.+++.+.+..|.+.. ..|.
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 9999999999999998888999999999999999999984444478889999999999887431 1111
Q ss_pred hHhhhccccceeecCCCcCCCCcchhccCC-CCCCEEEccCCcCccccCc-cc-cCCCCceEEeecCcCcccCchhhccC
Q 002350 506 WMGNFSSELEILSMSKNHLEGNVPVQLNNL-ERLRILDISENRLSGPIAS-SL-NLSSVEHLSLQKNALNGLIPGELFRS 582 (933)
Q Consensus 506 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~-~~-~l~~L~~L~L~~n~l~~~~p~~~~~l 582 (933)
.++.... ..-..+.+.++..+.+..|... ..+..--.+.+...+..|. +| .+++|+.|+|++|+++++-+.+|.+.
T Consensus 219 etsgarc-~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 219 ETSGARC-VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred hccccee-cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence 1111111 2233344444443334333322 2222212223333344443 34 78999999999999999889999999
Q ss_pred CCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCC
Q 002350 583 CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSD 662 (933)
Q Consensus 583 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~ 662 (933)
..++.|.|..|++...-...|.++..|+.|+|++|+|+-.-|.+|..+.+|..|.+-.|++...- .+..+..|.....
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC--~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC--RLAWLGEWLRKKS 375 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc--chHHHHHHHhhCC
Confidence 99999999999998777778889999999999999999888999999999999999999886321 1233333333222
Q ss_pred CccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcc-cEEEcCC
Q 002350 663 DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRV-TGLDLSC 741 (933)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~LdLs~ 741 (933)
.......+.+....++++.+...-+..- +. +++... .....-...++-+ ++...|+
T Consensus 376 -~~~~~~Cq~p~~~~~~~~~dv~~~~~~c---~~-------------~ee~~~------~~s~~cP~~c~c~~tVvRcSn 432 (498)
T KOG4237|consen 376 -VVGNPRCQSPGFVRQIPISDVAFGDFRC---GG-------------PEELGC------LTSSPCPPPCTCLDTVVRCSN 432 (498)
T ss_pred -CCCCCCCCCCchhccccchhcccccccc---CC-------------ccccCC------CCCCCCCCCcchhhhhHhhcc
Confidence 3344455555555555443321100000 00 000000 0000000111112 2345566
Q ss_pred CcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCC
Q 002350 742 NQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN 814 (933)
Q Consensus 742 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 814 (933)
+.++ .+|..+. .....|++.+|.++ .+|.. .+++| .+|+|+|+++..--..|.+++.|.+|-||||
T Consensus 433 k~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 433 KLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 6655 5555544 24556777777777 55555 56666 7777777777666667777777777777776
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=5.1e-22 Score=249.96 Aligned_cols=338 Identities=20% Similarity=0.210 Sum_probs=184.5
Q ss_pred cccCCCccEEEccCCc------CCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhh
Q 002350 361 KAKHDFLHHLDISCNN------FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV 434 (933)
Q Consensus 361 ~~~~~~L~~L~Ls~n~------l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 434 (933)
|..+++|+.|.+..+. +...+|..+....++|+.|.+.++.+. .+|..+ ...+|+.|++++|++. .++..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~ 630 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV 630 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc
Confidence 3344555555553332 122344444332334555555555544 344444 3455555555555554 333322
Q ss_pred hcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhcccc
Q 002350 435 VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSEL 514 (933)
Q Consensus 435 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L 514 (933)
..+++|+.|+++++.....+| .+..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++.+ |
T Consensus 631 -~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s-L 706 (1153)
T PLN03210 631 -HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS-L 706 (1153)
T ss_pred -ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC-C
Confidence 345555555555544333333 24445555555555554444555555555555555555554333444433 2333 5
Q ss_pred ceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcC-------cccCchhhccCCCccE
Q 002350 515 EILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL-------NGLIPGELFRSCKLVT 587 (933)
Q Consensus 515 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l-------~~~~p~~~~~l~~L~~ 587 (933)
+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..+.+++|++|.+.++.. ....+..+...++|+.
T Consensus 707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 55555555444333322 234555556555543 233333455555555544321 1111222233456777
Q ss_pred EeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCC
Q 002350 588 LNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNG 667 (933)
Q Consensus 588 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~ 667 (933)
|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----------------- 844 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----------------- 844 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------------
Confidence 7777776666677777777777777777765555666555 5677777777776543333321
Q ss_pred CCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCC
Q 002350 668 SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE 747 (933)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ 747 (933)
..+++.|+|++|.++ .
T Consensus 845 ---------------------------------------------------------------~~nL~~L~Ls~n~i~-~ 860 (1153)
T PLN03210 845 ---------------------------------------------------------------STNISDLNLSRTGIE-E 860 (1153)
T ss_pred ---------------------------------------------------------------ccccCEeECCCCCCc-c
Confidence 124666888888887 6
Q ss_pred CChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCe
Q 002350 748 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNK 791 (933)
Q Consensus 748 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~ 791 (933)
+|..++.+++|+.|+|++|+--..+|..+..+++|+.+++++|.
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 78888888888888888743333577777888888888888774
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=2.9e-21 Score=243.14 Aligned_cols=342 Identities=20% Similarity=0.209 Sum_probs=270.9
Q ss_pred ccCCCCCCCcceEEEccCCC------CCCCCchhhhCCC-CCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCc
Q 002350 284 KTENWLPTSQLIVLGLTKCN------LNGSYPDFLLHQY-HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI 356 (933)
Q Consensus 284 ~~~~~~~~~~L~~L~L~~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 356 (933)
...+|..+.+|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|+.|++.+|.+..+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccccc
Confidence 34467788888888886553 2234566666654 6999999999886 788765 578999999999998876
Q ss_pred CcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhc
Q 002350 357 LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 436 (933)
Q Consensus 357 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 436 (933)
. .....+++|+.|+++++.....+|. + ..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|...
T Consensus 627 ~-~~~~~l~~Lk~L~Ls~~~~l~~ip~-l-s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-- 701 (1153)
T PLN03210 627 W-DGVHSLTGLRNIDLRGSKNLKEIPD-L-SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-- 701 (1153)
T ss_pred c-cccccCCCCCEEECCCCCCcCcCCc-c-ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--
Confidence 3 3356789999999998875557775 3 348999999999998777899999999999999999987666787654
Q ss_pred CCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCC------CChhhHhhh
Q 002350 437 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG------HIPHWMGNF 510 (933)
Q Consensus 437 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~~~ 510 (933)
.+++|+.|++++|.....+|.. .++|++|++++|.+. .+|..+ .+++|++|.+.++.... .++......
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhc
Confidence 6889999999999766555543 468999999999987 566654 57888989888754210 111222223
Q ss_pred ccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeC
Q 002350 511 SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNL 590 (933)
Q Consensus 511 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 590 (933)
+++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|....+++|+.|++++|.....+|.. .++|+.|+|
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L 853 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNL 853 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeEC
Confidence 34599999999988888999999999999999999977777787778999999999998766566543 368999999
Q ss_pred cCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCc
Q 002350 591 RDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK 642 (933)
Q Consensus 591 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 642 (933)
++|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 999998 689999999999999999965555688888999999999999885
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=1.3e-23 Score=213.72 Aligned_cols=398 Identities=21% Similarity=0.236 Sum_probs=205.4
Q ss_pred EECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCC-CcCCCCCChhhhhcCCCCceEecccc
Q 002350 199 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSH-NNFEGMFPLSSLANHSKLEGLLLSTR 277 (933)
Q Consensus 199 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~l~~l~~L~~L~L~~~ 277 (933)
++|..|+|+...+.+|+.+++|+.||||+|+|+.+.|.+|.++.+|..|-+.+ |+|+ .+|...|+++..++.
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr------ 144 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR------ 144 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH------
Confidence 34444444444444455555555555555555544455555554444443333 4443 233333333333322
Q ss_pred cCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcC
Q 002350 278 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGIL 357 (933)
Q Consensus 278 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~ 357 (933)
|.+.-|++.-...+.|..++++..|.+.+|.+. .++...+..+..++.+++..|.+....
T Consensus 145 -------------------LllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 145 -------------------LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred -------------------HhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccccc
Confidence 223333333334455666666666666666665 555544455666666666666532221
Q ss_pred ------------cCCcccCCCccEEEccCCcCCCCCChhhh-hcCCCccEEEccCCCCCCCcc-ccccCCCCCCEEEcCC
Q 002350 358 ------------QLPKAKHDFLHHLDISCNNFRGKLPHNMG-VILQKLMYMDISKNCFEGNIP-YSAGEMKELSLLDLSR 423 (933)
Q Consensus 358 ------------~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~ 423 (933)
++.++......-..+.+.++. .++..-+ .....+..--.+.+...+..| ..|..+++|+.|+|++
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence 111223333333334444443 2222221 111122111222332333333 3467788888888888
Q ss_pred CcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCC-
Q 002350 424 NYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGH- 502 (933)
Q Consensus 424 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~- 502 (933)
|+++ .+....|.+...+++|.|..|++.......|.++..|++|+|++|+|+...|.+|..+.+|.+|.+-.|++.-.
T Consensus 284 N~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 284 NKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred Cccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 8887 56666777888888888888888776667778888888888888888877888888888888888887776421
Q ss_pred ChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCcc---ccCcc----------ccCCCCceEEeecC
Q 002350 503 IPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG---PIASS----------LNLSSVEHLSLQKN 569 (933)
Q Consensus 503 ~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~----------~~l~~L~~L~L~~n 569 (933)
-..|++... .+....|..| -+.-..++.+.+++..+.. ..|+. -.++-+.++.=-.|
T Consensus 363 ~l~wl~~Wl--------r~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSn 432 (498)
T KOG4237|consen 363 RLAWLGEWL--------RKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSN 432 (498)
T ss_pred chHHHHHHH--------hhCCCCCCCC--CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcc
Confidence 112222221 1111111111 0111123333333332211 01110 02333433322223
Q ss_pred cCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCC
Q 002350 570 ALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 641 (933)
Q Consensus 570 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 641 (933)
+....+|..+. ..-..|++.+|.++ .+|.. .+.+| .+++++|++...--..|.++++|.+|-|++|
T Consensus 433 k~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 433 KLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cchhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 33334444332 14556777777777 55555 44566 7788888877555667777777777777765
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=4.1e-21 Score=223.46 Aligned_cols=194 Identities=24% Similarity=0.299 Sum_probs=108.5
Q ss_pred CCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEc
Q 002350 415 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 494 (933)
Q Consensus 415 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 494 (933)
.-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. .+++|++|++++|+++ .+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 3567888888887 6776553 367788888887775 332 2467777777777776 34432 356777777
Q ss_pred cCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCccc
Q 002350 495 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 574 (933)
Q Consensus 495 s~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~ 574 (933)
++|.++ .+|.. +..|+.|++++|+++. +|. ..++|+.|++++|++++. |.. ..+|+.|++++|.+++
T Consensus 270 s~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l--p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 270 FSNPLT-HLPAL----PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL--PSELCKLWAYNNQLTS- 336 (788)
T ss_pred cCCchh-hhhhc----hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC--cccccccccccCcccc-
Confidence 777765 44432 2336677777777663 343 235566677776666543 221 2345555666666553
Q ss_pred CchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCC
Q 002350 575 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 644 (933)
Q Consensus 575 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 644 (933)
+|.. ..+|++|+|++|++++ +|.. ..+|+.|++++|++++ +|... .+|+.|++++|+++
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~---~~L~~LdLs~N~Lt 395 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP---SGLKELIVSGNRLT 395 (788)
T ss_pred cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc---cccceEEecCCccc
Confidence 2321 1245555666555552 3322 1345555555555552 34321 34555555555554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=5.7e-21 Score=222.23 Aligned_cols=215 Identities=22% Similarity=0.286 Sum_probs=143.7
Q ss_pred CCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEE
Q 002350 390 QKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLY 469 (933)
Q Consensus 390 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 469 (933)
..-..|+++.+.++ .+|..+. ++|+.|++++|+++ .+|. ..++|++|++++|+++.. |. ..++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC---cccccceee
Confidence 34567888888877 5666654 46888888888877 4554 356788888888887753 32 246778888
Q ss_pred ccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCc
Q 002350 470 FENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS 549 (933)
Q Consensus 470 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 549 (933)
+++|.++ .+|.. ..+|+.|++++|+++ .+|.. +.+|+.|++++|++++ +|.. ..+|+.|++++|+++
T Consensus 269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT 335 (788)
T ss_pred ccCCchh-hhhhc---hhhcCEEECcCCccc-ccccc----ccccceeECCCCcccc-CCCC---cccccccccccCccc
Confidence 8888876 34432 256778888888877 45542 2348888888888874 3432 235777788888876
Q ss_pred cccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhc
Q 002350 550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 629 (933)
Q Consensus 550 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 629 (933)
+ +|.. ..+|++|+|++|++++ +|.. ..+|+.|++++|++++ +|... .+|+.|++++|++++ +|..
T Consensus 336 ~-LP~l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~---~~L~~LdLs~N~Lt~-LP~l--- 400 (788)
T PRK15387 336 S-LPTL--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP---SGLKELIVSGNRLTS-LPVL--- 400 (788)
T ss_pred c-cccc--ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc---cccceEEecCCcccC-CCCc---
Confidence 5 3322 2467888888888875 3432 2467778888888873 56432 467888888888874 5543
Q ss_pred CCCCCEEEccCCcCC
Q 002350 630 LQKLAMMDLSRNKFS 644 (933)
Q Consensus 630 l~~L~~L~Ls~N~l~ 644 (933)
.++|+.|++++|+++
T Consensus 401 ~s~L~~LdLS~N~Ls 415 (788)
T PRK15387 401 PSELKELMVSGNRLT 415 (788)
T ss_pred ccCCCEEEccCCcCC
Confidence 246777777777776
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=7.1e-19 Score=206.55 Aligned_cols=229 Identities=20% Similarity=0.339 Sum_probs=127.8
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEE
Q 002350 366 FLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLD 445 (933)
Q Consensus 366 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 445 (933)
+...|+++++.++ .+|..+ .+.|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+. .+|+.|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEE
Confidence 4567888888887 677654 357888888888877 4555443 47788888887776 5665432 3567777
Q ss_pred CcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCC
Q 002350 446 LSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE 525 (933)
Q Consensus 446 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~ 525 (933)
+++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. .+|+.|++++|+++
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLT 317 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCccc
Confidence 7777666 3344332 35666666666665 3444332 35666666666555 3443221 22555555555554
Q ss_pred CCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhc
Q 002350 526 GNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE 605 (933)
Q Consensus 526 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 605 (933)
. +|..+. ++ |+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+.
T Consensus 318 ~-LP~~l~--~s-----------------------L~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp- 366 (754)
T PRK15370 318 A-LPETLP--PG-----------------------LKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP- 366 (754)
T ss_pred c-CCcccc--cc-----------------------ceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-
Confidence 2 222211 23 4444444444432 233222 45666666666665 3454442
Q ss_pred CCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchh
Q 002350 606 HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 651 (933)
Q Consensus 606 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~ 651 (933)
++|++|+|++|+++ .+|..+. ..|+.|++++|+++ .+|..+
T Consensus 367 -~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl 407 (754)
T PRK15370 367 -PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESL 407 (754)
T ss_pred -CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhH
Confidence 45666666666666 3444443 24666666666665 455444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.5e-18 Score=203.78 Aligned_cols=207 Identities=24% Similarity=0.407 Sum_probs=118.6
Q ss_pred CCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEE
Q 002350 390 QKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLY 469 (933)
Q Consensus 390 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 469 (933)
.+...|+++++.++ .+|..+. +.|+.|++++|+++ .+|..++ ++|++|++++|.++.
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts---------------- 234 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS---------------- 234 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc----------------
Confidence 34567777777776 4554442 45677777777666 4554332 345555555554442
Q ss_pred ccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCc
Q 002350 470 FENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS 549 (933)
Q Consensus 470 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 549 (933)
+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 235 ---------LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 235 ---------IPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred ---------CChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 233221 24566666666655 4554432 23666666666666 3444332 36677777777665
Q ss_pred cccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhc
Q 002350 550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 629 (933)
Q Consensus 550 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 629 (933)
+. |..+ .++|+.|++++|+++. +|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+.
T Consensus 297 ~L-P~~l-p~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp- 366 (754)
T PRK15370 297 TL-PAHL-PSGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP- 366 (754)
T ss_pred cC-cccc-hhhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-
Confidence 43 2211 2356667777777664 343332 467777777777764 565553 57777777777776 3555543
Q ss_pred CCCCCEEEccCCcCCCCCCc
Q 002350 630 LQKLAMMDLSRNKFSGSIPP 649 (933)
Q Consensus 630 l~~L~~L~Ls~N~l~g~~p~ 649 (933)
++|+.|++++|+++ .+|.
T Consensus 367 -~~L~~LdLs~N~Lt-~LP~ 384 (754)
T PRK15370 367 -PTITTLDVSRNALT-NLPE 384 (754)
T ss_pred -CCcCEEECCCCcCC-CCCH
Confidence 56777777777766 3443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=6e-19 Score=193.46 Aligned_cols=282 Identities=23% Similarity=0.280 Sum_probs=143.7
Q ss_pred EEECcCCcCC-CcCchhhcccCcCCeEEccCcccccc----ccccccCCCCCCEEEccCCcCCCCChhhHhhhcccccee
Q 002350 443 LLDLSNNNFE-GQFFSEYMNLTRLRHLYFENNNFSGK----IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEIL 517 (933)
Q Consensus 443 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L 517 (933)
.|+|..+.++ ......+..+++|+.++++++.+++. ++..+...+.+++++++++.+.+ .+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~---------- 70 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL---------- 70 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH----------
Confidence 3566666665 23334445566677777777766432 33344555666667666665542 11110
Q ss_pred ecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cC---CCCceEEeecCcCcc----cCchhhccC-CCccEE
Q 002350 518 SMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NL---SSVEHLSLQKNALNG----LIPGELFRS-CKLVTL 588 (933)
Q Consensus 518 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l---~~L~~L~L~~n~l~~----~~p~~~~~l-~~L~~L 588 (933)
..++..+..+++|+.|++++|.+.+..+..+ .+ ++|++|++++|++.+ .+...+..+ ++|+.|
T Consensus 71 --------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L 142 (319)
T cd00116 71 --------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142 (319)
T ss_pred --------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE
Confidence 0112233334444444444444433222222 11 225555555554442 122233444 566666
Q ss_pred eCcCCcCccc----CchhhhcCCCccEEEcCCCcCCCC----CchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccC
Q 002350 589 NLRDNTFSGR----IPHQINEHSNLRFLLLGGNHLQGP----IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVG 660 (933)
Q Consensus 589 ~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~ 660 (933)
++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++..+..+...
T Consensus 143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~------ 216 (319)
T cd00116 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET------ 216 (319)
T ss_pred EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH------
Confidence 6666666532 233445556666666666666632 23334455567777777666653221111110
Q ss_pred CCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcC
Q 002350 661 SDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLS 740 (933)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs 740 (933)
...+++|+.||++
T Consensus 217 -------------------------------------------------------------------~~~~~~L~~L~ls 229 (319)
T cd00116 217 -------------------------------------------------------------------LASLKSLEVLNLG 229 (319)
T ss_pred -------------------------------------------------------------------hcccCCCCEEecC
Confidence 0123456667777
Q ss_pred CCcCCCCCChhhhh-----ccccCeeeccccccc----cccchhccCCCCCCEEECcCCeeccc----CCcCCcCC-CCC
Q 002350 741 CNQLTGEIPSDIGQ-----LQAILALNLSNNSLS----GSIPESFSNLKMIESLDISYNKLTGQ----IPPQLTAL-NFL 806 (933)
Q Consensus 741 ~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~LdLs~N~l~~~----ip~~l~~l-~~L 806 (933)
+|.+++..+..+.. .+.|+.|++++|.++ ..+...+..+++|+.+|+++|.++.. +...+... +.|
T Consensus 230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~ 309 (319)
T cd00116 230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNEL 309 (319)
T ss_pred CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCch
Confidence 77666533333322 256777777777765 22344556667777777777777643 33334444 567
Q ss_pred CeEEccCCcC
Q 002350 807 SIFNVSYNNL 816 (933)
Q Consensus 807 ~~L~ls~N~l 816 (933)
+.+++.+|++
T Consensus 310 ~~~~~~~~~~ 319 (319)
T cd00116 310 ESLWVKDDSF 319 (319)
T ss_pred hhcccCCCCC
Confidence 7777776653
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=7.5e-18 Score=184.76 Aligned_cols=253 Identities=24% Similarity=0.257 Sum_probs=117.1
Q ss_pred CCCccEEEccCCCCCCC----ccccccCCCCCCEEEcCCCcCCC--C---cchhhhcCCCCCCEEECcCCcCCCcCchhh
Q 002350 389 LQKLMYMDISKNCFEGN----IPYSAGEMKELSLLDLSRNYFSG--G---LSQSVVTGCFSLELLDLSNNNFEGQFFSEY 459 (933)
Q Consensus 389 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~--~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 459 (933)
+++|++++++++.++.. ++..+...+.++.++++++.+.+ . .....+..+++|+.|++++|.+.+..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 44455555555544321 22333344445555555554431 0 000122334455555555555544333333
Q ss_pred cccCc---CCeEEccCccccc----cccccccCC-CCCCEEEccCCcCCCCCh----hhHhhhccccceeecCCCcCCCC
Q 002350 460 MNLTR---LRHLYFENNNFSG----KIKDGLLSS-TSLQVLDISNNMLSGHIP----HWMGNFSSELEILSMSKNHLEGN 527 (933)
Q Consensus 460 ~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~Ls~n~l~~~~p----~~l~~~~~~L~~L~L~~n~l~~~ 527 (933)
..+.+ |++|++++|++++ .+...+..+ ++|++|++++|.+++..+ ..+..+.. |+.|++++|.+++.
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~ 180 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD-LKELNLANNGIGDA 180 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCC-cCEEECcCCCCchH
Confidence 33333 5555555555542 112223334 555666666665553222 12222223 55566655555532
Q ss_pred ----cchhccCCCCCCEEEccCCcCccccC----ccc-cCCCCceEEeecCcCcccCchhhcc-----CCCccEEeCcCC
Q 002350 528 ----VPVQLNNLERLRILDISENRLSGPIA----SSL-NLSSVEHLSLQKNALNGLIPGELFR-----SCKLVTLNLRDN 593 (933)
Q Consensus 528 ----~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~-~l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~Ls~N 593 (933)
++..+..+++|+.|++++|.+.+... ..+ .+++|++|++++|.+++.....+.. .+.|+.|++++|
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 22233444556666666665543221 112 3455566666655554322222211 256666666666
Q ss_pred cCcc----cCchhhhcCCCccEEEcCCCcCCCC----CchhhhcC-CCCCEEEccCCc
Q 002350 594 TFSG----RIPHQINEHSNLRFLLLGGNHLQGP----IPDQLCQL-QKLAMMDLSRNK 642 (933)
Q Consensus 594 ~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~ 642 (933)
.++. .+...+..+++|+++++++|.++.. ....+... +.|+.+++.+|+
T Consensus 261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 6651 2333444556666666666666633 22233333 456666666654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=2.9e-18 Score=155.06 Aligned_cols=171 Identities=30% Similarity=0.538 Sum_probs=139.5
Q ss_pred ccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcC
Q 002350 551 PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL 630 (933)
Q Consensus 551 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 630 (933)
.++..+.+...+.|.|++|+++ .+|..+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.+
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~ 101 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF 101 (264)
T ss_pred hcccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence 4455667788888999999987 56778899999999999999998 78999999999999999999998 789999999
Q ss_pred CCCCEEEccCCcCCC-CCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhc
Q 002350 631 QKLAMMDLSRNKFSG-SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAI 709 (933)
Q Consensus 631 ~~L~~L~Ls~N~l~g-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 709 (933)
+.|+.||+++|+++. .+|..|..+
T Consensus 102 p~levldltynnl~e~~lpgnff~m------------------------------------------------------- 126 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYM------------------------------------------------------- 126 (264)
T ss_pred chhhhhhccccccccccCCcchhHH-------------------------------------------------------
Confidence 999999999999873 233332221
Q ss_pred hhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcC
Q 002350 710 DERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISY 789 (933)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~ 789 (933)
..|+.|+|+.|.|. .+|.+++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+
T Consensus 127 ----------------------~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 127 ----------------------TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred ----------------------HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 23445788888887 78888999999999999998887 6888889999999999999
Q ss_pred CeecccCCcCCcCCC
Q 002350 790 NKLTGQIPPQLTALN 804 (933)
Q Consensus 790 N~l~~~ip~~l~~l~ 804 (933)
|+++ .+|++++++.
T Consensus 183 nrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 183 NRLT-VLPPELANLD 196 (264)
T ss_pred ceee-ecChhhhhhh
Confidence 9888 6676766553
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.4e-17 Score=150.63 Aligned_cols=181 Identities=24% Similarity=0.431 Sum_probs=155.2
Q ss_pred hhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhcc
Q 002350 578 ELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSW 657 (933)
Q Consensus 578 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l 657 (933)
.+..+...+.|.|++|+++ .+|..+..+.+|+.|++.+|++. .+|.+++.++.|+.|+++-|++. ..|..|+.+
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~--- 101 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF--- 101 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC---
Confidence 3456678889999999999 77888999999999999999999 68999999999999999999987 677766543
Q ss_pred ccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEE
Q 002350 658 RVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGL 737 (933)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 737 (933)
+.|+.|
T Consensus 102 --------------------------------------------------------------------------p~levl 107 (264)
T KOG0617|consen 102 --------------------------------------------------------------------------PALEVL 107 (264)
T ss_pred --------------------------------------------------------------------------chhhhh
Confidence 356679
Q ss_pred EcCCCcCCC-CCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcC
Q 002350 738 DLSCNQLTG-EIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL 816 (933)
Q Consensus 738 dLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 816 (933)
||++|++.. ..|..|-.++.|+.|+|++|.+. .+|..++++++|+.|.+..|.+- ..|.+++.++.|+.|.+.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 999999874 58888999999999999999998 78889999999999999999998 7999999999999999999999
Q ss_pred cccCCCCCcCCccC---cccccCCCCC
Q 002350 817 SGRTPDKGQFATFD---ESSYRGNPSL 840 (933)
Q Consensus 817 ~g~~p~~~~~~~~~---~~~~~gN~~l 840 (933)
+-..|..+++.-.. ....+.|||.
T Consensus 186 ~vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 186 TVLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred eecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 98888766654332 2334567765
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.57 E-value=7.3e-15 Score=172.69 Aligned_cols=117 Identities=37% Similarity=0.609 Sum_probs=104.8
Q ss_pred cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350 733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 812 (933)
Q Consensus 733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 812 (933)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCC--CcCCccCcccccCCCCCCCccccCCC
Q 002350 813 YNNLSGRTPDK--GQFATFDESSYRGNPSLCAWLIQQKY 849 (933)
Q Consensus 813 ~N~l~g~~p~~--~~~~~~~~~~~~gN~~lc~~~l~~~~ 849 (933)
+|+++|.+|.. ..+.......+.||+++|+.+....|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 99999999975 22234456678999999987643444
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.43 E-value=5.4e-13 Score=157.02 Aligned_cols=156 Identities=21% Similarity=0.302 Sum_probs=86.5
Q ss_pred CCChHHHHHHHHHhhhhcccccccccCCCCCCCCCCCCCCCCCCCCCc----ccceeEecCCCCcEEEEecCCCCCCCCC
Q 002350 26 KACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCC----HWQRVKCNATTGRVMQLSLKNTTRLNYP 101 (933)
Q Consensus 26 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~~~C----~w~gv~c~~~~~~V~~l~l~~~~~l~l~ 101 (933)
..+.++|.+||+++|+++..+ . ..+| .. ..|| .|.||.|......
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~------~--~~~W-~g-------~~C~p~~~~w~Gv~C~~~~~~--------------- 415 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLP------L--RFGW-NG-------DPCVPQQHPWSGADCQFDSTK--------------- 415 (623)
T ss_pred cccCchHHHHHHHHHHhcCCc------c--cCCC-CC-------CCCCCcccccccceeeccCCC---------------
Confidence 456678999999999988432 1 2489 43 2343 7999999631100
Q ss_pred CCCcccccccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcc
Q 002350 102 YDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRI 181 (933)
Q Consensus 102 ~~~~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 181 (933)
....++.|+|++|.+.+.++ ..++++++|++|+|++|.+.+.+|..++.
T Consensus 416 -------------~~~~v~~L~L~~n~L~g~ip----~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~-------------- 464 (623)
T PLN03150 416 -------------GKWFIDGLGLDNQGLRGFIP----NDISKLRHLQSINLSGNSIRGNIPPSLGS-------------- 464 (623)
T ss_pred -------------CceEEEEEECCCCCccccCC----HHHhCCCCCCEEECCCCcccCcCChHHhC--------------
Confidence 00013444555555555444 44555555555555555555555544444
Q ss_pred cCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCC-CCCCEEECCCCcC
Q 002350 182 EGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNL-TSLEYLDLSHNNF 254 (933)
Q Consensus 182 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~n~l 254 (933)
+++|+.|+|++|++++.+|+.++++++|++|+|++|++++.+|..++.+ .++..+++.+|..
T Consensus 465 -----------l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 465 -----------ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred -----------CCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 4445555555555555555555555666666666666665555555442 3445555555543
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=8.1e-14 Score=149.32 Aligned_cols=103 Identities=28% Similarity=0.459 Sum_probs=49.6
Q ss_pred CCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCC
Q 002350 538 LRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 617 (933)
Q Consensus 538 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 617 (933)
-...|++.|++.........+..|+.+.|.+|.+. .+|..+.++..|.++||+.|+++ .+|..+..|+ |+.|.+++|
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 34455555555432222224444555555555543 34445555555555555555554 3444444433 455555555
Q ss_pred cCCCCCchhhhcCCCCCEEEccCCcCC
Q 002350 618 HLQGPIPDQLCQLQKLAMMDLSRNKFS 644 (933)
Q Consensus 618 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 644 (933)
+++ .+|+.++.+..|..||.+.|.+.
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh
Confidence 554 34444444455555555555544
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.19 E-value=2.6e-11 Score=136.84 Aligned_cols=122 Identities=30% Similarity=0.396 Sum_probs=52.9
Q ss_pred eeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCC-CCceEEeecCcCcccCchhhccCCCccEEeCcCCc
Q 002350 516 ILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLS-SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNT 594 (933)
Q Consensus 516 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 594 (933)
.+.+..|.+... ...+..++.++.|++.+|.++...+...... +|+.|++++|.+. .+|..+..++.|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 344555544311 2223333555555555555544333332332 4555555555444 223334444444444444444
Q ss_pred CcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCC
Q 002350 595 FSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 641 (933)
Q Consensus 595 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 641 (933)
++ .+|......++|+.|++++|++. .+|........|+.+++++|
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 44 23333333444444444444444 33333333333444444444
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=1.3e-12 Score=140.19 Aligned_cols=189 Identities=29% Similarity=0.452 Sum_probs=113.6
Q ss_pred EEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCC
Q 002350 443 LLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN 522 (933)
Q Consensus 443 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n 522 (933)
..|++.|++. ++|..+..+..|+.+.++.|.+. .+|..+.++..|+.++++.|+++ ..|..++.++ |+.|.+++|
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKVLIVSNN 153 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--ceeEEEecC
Confidence 3444444444 33444445555666666666655 55666666666666666666665 5666666654 666666666
Q ss_pred cCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchh
Q 002350 523 HLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQ 602 (933)
Q Consensus 523 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 602 (933)
+++ .+|..++....|..||.+.|.+....+...++.+|+.|.+..|++. .+|..+. .-.|..||++.|+++ .+|-.
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchh
Confidence 666 5566666666666666666666555444446666666666666665 3455555 335667777777776 56777
Q ss_pred hhcCCCccEEEcCCCcCCCCCchhhhcCCC---CCEEEccCC
Q 002350 603 INEHSNLRFLLLGGNHLQGPIPDQLCQLQK---LAMMDLSRN 641 (933)
Q Consensus 603 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~---L~~L~Ls~N 641 (933)
|.+++.|++|.|.+|+++ ..|..++..-. .++|+...+
T Consensus 230 fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 777777777777777776 45555543222 234444444
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=6.7e-11 Score=133.51 Aligned_cols=200 Identities=35% Similarity=0.498 Sum_probs=127.9
Q ss_pred CEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCC-CccEEeCcCCcCcccCchhhhcCCCccEEEcCCC
Q 002350 539 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 617 (933)
Q Consensus 539 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 617 (933)
..+++..|.+...+......+.++.|++.+|.++. +|....... +|+.|++++|++. .+|..++.+++|+.|++++|
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 35677777665555544455677777777777763 344455553 7777777777777 55566777777777777777
Q ss_pred cCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchh
Q 002350 618 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMW 697 (933)
Q Consensus 618 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (933)
+++ .+|...+..+.|+.|++++|+++ .+|.....
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-------------------------------------------- 207 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-------------------------------------------- 207 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh--------------------------------------------
Confidence 777 45555556777777777777776 34432110
Q ss_pred hhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhcc
Q 002350 698 RWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFS 777 (933)
Q Consensus 698 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 777 (933)
...|..|++++|+.. .++..+..+..+..|.+++|++. .++..++
T Consensus 208 ---------------------------------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~ 252 (394)
T COG4886 208 ---------------------------------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIG 252 (394)
T ss_pred ---------------------------------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhc
Confidence 123455666666433 45556666667777777777766 3356666
Q ss_pred CCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCC
Q 002350 778 NLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK 823 (933)
Q Consensus 778 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~ 823 (933)
++++++.|++++|+++ .++. +..+..++.|++++|.++...|..
T Consensus 253 ~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 253 NLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 7777777777777776 3333 666677777777777776665543
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.10 E-value=6.5e-12 Score=127.75 Aligned_cols=42 Identities=33% Similarity=0.410 Sum_probs=23.9
Q ss_pred CCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCC
Q 002350 114 HPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN 155 (933)
Q Consensus 114 ~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n 155 (933)
..+..++.++||+|.|...-.......+.+.++|+..++|+-
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ 68 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM 68 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh
Confidence 345566677777776654433333345555666666666543
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=6.4e-11 Score=117.35 Aligned_cols=88 Identities=25% Similarity=0.270 Sum_probs=63.0
Q ss_pred CCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeeccc-CCcCCcCCCCCCeE
Q 002350 731 VNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ-IPPQLTALNFLSIF 809 (933)
Q Consensus 731 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~-ip~~l~~l~~L~~L 809 (933)
+++|+.||||+|.++ .+-..=..+.+.+.|+|+.|.+.. -+.+++|-+|..||+++|+|... --..+++|+.|+.+
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 346677777777776 444444456777888888888762 23567778888888888888632 22467888999999
Q ss_pred EccCCcCcccCC
Q 002350 810 NVSYNNLSGRTP 821 (933)
Q Consensus 810 ~ls~N~l~g~~p 821 (933)
-+.+|++.+.+.
T Consensus 405 ~L~~NPl~~~vd 416 (490)
T KOG1259|consen 405 RLTGNPLAGSVD 416 (490)
T ss_pred hhcCCCccccch
Confidence 999999987654
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=6.9e-11 Score=123.56 Aligned_cols=134 Identities=24% Similarity=0.206 Sum_probs=62.3
Q ss_pred cceEEEccCCCCCCC-CchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCC-cccCCCccEE
Q 002350 293 QLIVLGLTKCNLNGS-YPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLP-KAKHDFLHHL 370 (933)
Q Consensus 293 ~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L 370 (933)
+|+.|.++.|+++.. +-..+..+|+|+.|+|..|......... ...+..|+.|+|++|.+......+ .+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 444444455544421 1122334555555555555311111000 112345555555555554443222 2355555555
Q ss_pred EccCCcCCCC-CChh----hhhcCCCccEEEccCCCCCCC-ccccccCCCCCCEEEcCCCcCC
Q 002350 371 DISCNNFRGK-LPHN----MGVILQKLMYMDISKNCFEGN-IPYSAGEMKELSLLDLSRNYFS 427 (933)
Q Consensus 371 ~Ls~n~l~~~-~p~~----~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~ 427 (933)
+++.+.+... +|+. ....+++|++|++..|++..- .-..+..+++|+.|.+..|.++
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 5555554421 1111 112467777777777776421 1123344566677777777765
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1e-10 Score=122.36 Aligned_cols=186 Identities=20% Similarity=0.185 Sum_probs=85.2
Q ss_pred hcCCCccEEEccCCCCCCC--ccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCc-hhhcccC
Q 002350 387 VILQKLMYMDISKNCFEGN--IPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFF-SEYMNLT 463 (933)
Q Consensus 387 ~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~ 463 (933)
..|++++.|||+.|-+..- +..-..++++|+.|+++.|++........-..++.|+.|.|+.|.++..-. .....+|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 3466666666666655431 112234566666666666666532222222234455555555555542111 1122345
Q ss_pred cCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCc-chhccCCCCCCEEE
Q 002350 464 RLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNV-PVQLNNLERLRILD 542 (933)
Q Consensus 464 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 542 (933)
+|+.|++..|...........-+.. |+.|+|++|++.... -.....++.|..|+
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~-------------------------L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQT-------------------------LQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhH-------------------------HhhccccCCcccccccccccccccchhhhh
Confidence 5555555554311111111222333 444444444443211 12234445555555
Q ss_pred ccCCcCccc-cCcc------ccCCCCceEEeecCcCcccC-chhhccCCCccEEeCcCCcCcc
Q 002350 543 ISENRLSGP-IASS------LNLSSVEHLSLQKNALNGLI-PGELFRSCKLVTLNLRDNTFSG 597 (933)
Q Consensus 543 Ls~n~l~~~-~~~~------~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~ 597 (933)
++.+.+... .|.. -.+++|++|++..|++...- -..+..+++|+.|.+..|.++.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 555544321 1111 14566666666666663210 0233445667777777777763
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=9.5e-10 Score=105.76 Aligned_cols=128 Identities=27% Similarity=0.189 Sum_probs=38.4
Q ss_pred CCCCCCEEeCCCCcCCCcchhhhc-CCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCC
Q 002350 143 SLKQLKILVLGHNYFDDSIFSYLN-TLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLK 221 (933)
Q Consensus 143 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 221 (933)
+..++++|+|++|.|+.. ..++ .+.+|+.|+|++|.|+.. ..+..+++|++|++++|.++...+.....+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 334455555555555421 1233 355566666666666543 2355666666666666666653222123466677
Q ss_pred EEEccCCcCCCCC-chhccCCCCCCEEECCCCcCCCCCC--hhhhhcCCCCceEecc
Q 002350 222 ILDISSNQLNGSL-PSVISNLTSLEYLDLSHNNFEGMFP--LSSLANHSKLEGLLLS 275 (933)
Q Consensus 222 ~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~l~~L~~L~L~ 275 (933)
+|++++|++.... -..+..+++|++|++.+|.++..-. ...+..+++|+.||-.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 7777776665421 1345566777777777776653311 2245566666666543
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.95 E-value=1.7e-10 Score=117.60 Aligned_cols=88 Identities=20% Similarity=0.267 Sum_probs=48.6
Q ss_pred cCCCCceEEeecCcCccc----CchhhccCCCccEEeCcCCcCcccCchhh-----hcCCCccEEEcCCCcCCCC----C
Q 002350 557 NLSSVEHLSLQKNALNGL----IPGELFRSCKLVTLNLRDNTFSGRIPHQI-----NEHSNLRFLLLGGNHLQGP----I 623 (933)
Q Consensus 557 ~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~----~ 623 (933)
.+++|+.|+|.+|-++.. +...+..++.|+.|++++|.+...-...+ ...++|++|.+.+|.++.. +
T Consensus 211 ~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l 290 (382)
T KOG1909|consen 211 HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL 290 (382)
T ss_pred hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH
Confidence 455555555555544422 12233445566666666666654333222 2356777777777776632 2
Q ss_pred chhhhcCCCCCEEEccCCcCC
Q 002350 624 PDQLCQLQKLAMMDLSRNKFS 644 (933)
Q Consensus 624 p~~l~~l~~L~~L~Ls~N~l~ 644 (933)
...+...+.|..|+|++|++.
T Consensus 291 a~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 291 AACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHhcchhhHHhcCCccccc
Confidence 233455677777888888774
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=9.8e-10 Score=105.66 Aligned_cols=130 Identities=28% Similarity=0.272 Sum_probs=48.2
Q ss_pred hcCCCCCCEEecCCCcccCccChhhhc-CCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhc-cCCC
Q 002350 165 LNTLPSLCTLILHWNRIEGSQTNQGIC-ELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVI-SNLT 242 (933)
Q Consensus 165 l~~l~~L~~L~Ls~n~i~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~ 242 (933)
+.+..++++|+|.+|.|+... .++ .+.+|+.|+|++|.++.. +.+..+++|++|++++|+++...+ .+ ..++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie---~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE---NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE-GLDKNLP 88 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH-HHHHH-T
T ss_pred ccccccccccccccccccccc---chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc-chHHhCC
Confidence 456668899999999998653 355 578999999999999873 357889999999999999985433 34 4689
Q ss_pred CCCEEECCCCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCC---chhhhCCCCCC
Q 002350 243 SLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSY---PDFLLHQYHLK 319 (933)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---p~~l~~l~~L~ 319 (933)
+|++|++++|++...-....++.+++|++|++. +|.++... ...+..+|+|+
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~-------------------------~NPv~~~~~YR~~vi~~lP~Lk 143 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLE-------------------------GNPVCEKKNYRLFVIYKLPSLK 143 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-T-------------------------T-GGGGSTTHHHHHHHH-TT-S
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeecc-------------------------CCcccchhhHHHHHHHHcChhh
Confidence 999999999998765444455555555555554 44444221 12466788888
Q ss_pred EEEccC
Q 002350 320 YLDLSH 325 (933)
Q Consensus 320 ~L~Ls~ 325 (933)
.||-..
T Consensus 144 ~LD~~~ 149 (175)
T PF14580_consen 144 VLDGQD 149 (175)
T ss_dssp EETTEE
T ss_pred eeCCEE
Confidence 887643
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=7.1e-10 Score=110.06 Aligned_cols=128 Identities=29% Similarity=0.384 Sum_probs=66.2
Q ss_pred CCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEe
Q 002350 487 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSL 566 (933)
Q Consensus 487 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L 566 (933)
..|+++|+++|.|+ .+.+++.-.|. ++.|++++|.+.... .+..+++|+.|||++|.++....-..++-+.+.|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pk-ir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPK-LRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccc-eeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 44566666666665 44444444444 666666666665221 255566666666666665432221124555555666
Q ss_pred ecCcCcccCchhhccCCCccEEeCcCCcCccc-CchhhhcCCCccEEEcCCCcCC
Q 002350 567 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGR-IPHQINEHSNLRFLLLGGNHLQ 620 (933)
Q Consensus 567 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~ 620 (933)
++|.+... +.+.++-+|..||+++|+|... --..+++++.|+.+.|.+|++.
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 65555422 3444555555556665555421 1123445555555555555554
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=3.5e-09 Score=83.62 Aligned_cols=60 Identities=43% Similarity=0.592 Sum_probs=33.9
Q ss_pred ccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcC
Q 002350 757 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL 816 (933)
Q Consensus 757 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 816 (933)
+|++|++++|+++...++.|.++++|++||+++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555544445555555555555555555555555555555555555555543
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=5.5e-09 Score=82.46 Aligned_cols=61 Identities=41% Similarity=0.576 Sum_probs=56.6
Q ss_pred CcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCee
Q 002350 732 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKL 792 (933)
Q Consensus 732 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 792 (933)
++|+.|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3688999999999976668899999999999999999999999999999999999999986
No 39
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.70 E-value=1.6e-08 Score=72.82 Aligned_cols=42 Identities=36% Similarity=0.740 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhhcccccccccCCCCCCCCCCCCCCCCCCCCCcccceeEec
Q 002350 30 ETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRVKCN 81 (933)
Q Consensus 30 ~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~~~C~w~gv~c~ 81 (933)
++|++||++||+++..+ +.+.+.+| +... ..+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~-----~~~~l~~W-~~~~----~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNND-----PSGVLSSW-NPSS----DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-S-----C-CCCTT---TT------S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccc-----cCcccccC-CCcC----CCCCeeeccEEeC
Confidence 68999999999999642 35789999 5431 1589999999996
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.70 E-value=1.3e-08 Score=122.53 Aligned_cols=106 Identities=27% Similarity=0.313 Sum_probs=60.1
Q ss_pred CCCEEeCCCCc--CCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEE
Q 002350 146 QLKILVLGHNY--FDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKIL 223 (933)
Q Consensus 146 ~L~~L~Ls~n~--l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 223 (933)
+|++|-+..|. +.......|..++.|++|||++|.--+..| ..++.+-+||+|+|++..+.. +|..++++..|.+|
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP-~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP-SSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC-hHHhhhhhhhcccccCCCccc-cchHHHHHHhhhee
Confidence 45565555554 333344445556666666666655444444 456666666666666666553 56666666666666
Q ss_pred EccCCcCCCCCchhccCCCCCCEEECCCCc
Q 002350 224 DISSNQLNGSLPSVISNLTSLEYLDLSHNN 253 (933)
Q Consensus 224 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 253 (933)
++..+.-...+|.....+++|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 666655443445555556666666655443
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=2.1e-09 Score=121.36 Aligned_cols=129 Identities=34% Similarity=0.426 Sum_probs=80.5
Q ss_pred CCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCC
Q 002350 115 PLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELK 194 (933)
Q Consensus 115 ~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~ 194 (933)
.+..++.+++..|.+.... ..+..+++|+.|++.+|.|... ...+..+++|++|++++|.|+...+ +..++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~-----~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~ 140 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKIL-----NHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG---LSTLT 140 (414)
T ss_pred HhHhHHhhccchhhhhhhh-----cccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc---hhhcc
Confidence 4556666666666654311 3466777777777777777632 2225667777777777777766533 56666
Q ss_pred CCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCc-hhccCCCCCCEEECCCCcCC
Q 002350 195 NLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP-SVISNLTSLEYLDLSHNNFE 255 (933)
Q Consensus 195 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~ 255 (933)
.|+.|++++|.+.. ...+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus 141 ~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 141 LLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred chhhheeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 67777777777665 2334456677777777777664433 1 455666666777766654
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.65 E-value=3e-09 Score=120.10 Aligned_cols=85 Identities=22% Similarity=0.270 Sum_probs=57.7
Q ss_pred ccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeeccc---CCcC-CcCCCCCCeE
Q 002350 734 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ---IPPQ-LTALNFLSIF 809 (933)
Q Consensus 734 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~---ip~~-l~~l~~L~~L 809 (933)
|+.+++++|++. .++..+..+..+..|++++|++...- .+.....+..+.++.|.+... .+.. ....+.+..+
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 566788888876 44466777788888888888887432 245566677777777776521 2221 4556778888
Q ss_pred EccCCcCcccCC
Q 002350 810 NVSYNNLSGRTP 821 (933)
Q Consensus 810 ~ls~N~l~g~~p 821 (933)
.+.+|+.....+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 888888776555
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.59 E-value=7.1e-08 Score=116.24 Aligned_cols=276 Identities=21% Similarity=0.147 Sum_probs=152.8
Q ss_pred CCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcC-CCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEE
Q 002350 341 PKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF-RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLL 419 (933)
Q Consensus 341 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 419 (933)
...+...+-+|.+..+. .-..++.|++|-+.+|.. ...++..++..++.|+.||+++|.--+.+|..++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~~~--~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA--GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhcc--CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 45566666666555442 122444677777777751 236777777778888888888877666788888888888888
Q ss_pred EcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCcc--ccccccccccCCCCCCEEEccCC
Q 002350 420 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNN--FSGKIKDGLLSSTSLQVLDISNN 497 (933)
Q Consensus 420 ~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~Ls~n 497 (933)
++++..+. .+|..+ ..+..|.+|++..+.....++.....+++|++|.+..-. .+...-..+..+..|+.+.....
T Consensus 601 ~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred cccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 88888877 677765 577788888888776655556666668888888776643 22222233445555555555433
Q ss_pred cCCC-CChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc------c-CCCCceEEeecC
Q 002350 498 MLSG-HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL------N-LSSVEHLSLQKN 569 (933)
Q Consensus 498 ~l~~-~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~-l~~L~~L~L~~n 569 (933)
.... .-......+....+.+.+.++... ..+..+..+.+|+.|.+.++.+........ . ++++..+.+.++
T Consensus 679 s~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~ 757 (889)
T KOG4658|consen 679 SVLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNC 757 (889)
T ss_pred hhHhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcc
Confidence 2200 001111122222333443333322 344556677777777777777654322221 0 222333333333
Q ss_pred cCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCC
Q 002350 570 ALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP 622 (933)
Q Consensus 570 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 622 (933)
..-. .+....-.++|+.|.+..+.....+......+..++.+.+..+.+.+.
T Consensus 758 ~~~r-~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 758 HMLR-DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred cccc-ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence 2111 112222335666666666655544444444444555555555555443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4.6e-09 Score=104.54 Aligned_cols=180 Identities=24% Similarity=0.250 Sum_probs=91.7
Q ss_pred CCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCc-ccCccChhhhcCCCCC
Q 002350 118 ELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNR-IEGSQTNQGICELKNL 196 (933)
Q Consensus 118 ~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~l~~l~~L 196 (933)
.|++||||+..++..... .-+..+.+|+.|.|.++++++.+...+++-..|+.|||+.+. ++.....-.+.+++.|
T Consensus 186 Rlq~lDLS~s~it~stl~---~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLH---GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHH---HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 466777776655432211 234556666667777777766666666666677777766653 2221111234566666
Q ss_pred CEEECCCCCCCCcchhhc-CC-CCCCCEEEccCCcCC---CCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCce
Q 002350 197 FEMNLERNFIGSPLITCL-KN-LTRLKILDISSNQLN---GSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEG 271 (933)
Q Consensus 197 ~~L~Ls~n~l~~~~~~~l-~~-l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 271 (933)
++|+|+.|.+..+....+ .. -++|+.|+|+++.-. ..+..-..++++|.+|||++|.
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v------------------ 324 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV------------------ 324 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc------------------
Confidence 666666666544322111 11 135556666554211 0111112345555555555554
Q ss_pred EecccccCccccccCCCCCCCcceEEEccCCCCCCCCchh---hhCCCCCCEEEccCCC
Q 002350 272 LLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDF---LLHQYHLKYLDLSHNK 327 (933)
Q Consensus 272 L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~ 327 (933)
.....-...+..++.|++|.++.|-. .+|.. +...+.|.+||+.++-
T Consensus 325 -------~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 325 -------MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred -------ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 22222222344445555555555533 34443 3456777777777654
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=3.7e-08 Score=98.14 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=35.7
Q ss_pred CCCCCCEEEcCCCCCcCcCcC-CcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCC
Q 002350 339 NNPKLEVLLLKNNSFSGILQL-PKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFE 403 (933)
Q Consensus 339 ~l~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~ 403 (933)
-+|++..+.+..|.+...... .+..++.+..|+|+.+++...-.-+....++.|..|.++++.+.
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 456677777777766544322 23455566666676666653222222234666666666666554
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=7.3e-09 Score=103.10 Aligned_cols=160 Identities=19% Similarity=0.137 Sum_probs=93.4
Q ss_pred CCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCC-CcccchhHHHhCCCCCCEEEcCCCCCcCcCcCC--cccC
Q 002350 288 WLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNK-LVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLP--KAKH 364 (933)
Q Consensus 288 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~ 364 (933)
+..+.+|+.|.+.++++.+.+...++...+|+.|+|+.+. ++......++.+++.|..|+++.|.+....... ..--
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 3345556666677777776677777777778888887763 443334445667777888888777655432111 1234
Q ss_pred CCccEEEccCCc--CCCCCChhhhhcCCCccEEEccCCC-CCCCccccccCCCCCCEEEcCCCcCCCCcchhh--hcCCC
Q 002350 365 DFLHHLDISCNN--FRGKLPHNMGVILQKLMYMDISKNC-FEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV--VTGCF 439 (933)
Q Consensus 365 ~~L~~L~Ls~n~--l~~~~p~~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~~l~ 439 (933)
++|+.|+++++. +...--..+...+|+|.+|||++|. ++...-..+.+++.|++|.+++|.. .+|..+ +...+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~p 363 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKP 363 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCc
Confidence 567777777654 1111112233457788888887764 3333334556677777777777763 233322 23445
Q ss_pred CCCEEECcCC
Q 002350 440 SLELLDLSNN 449 (933)
Q Consensus 440 ~L~~L~Ls~n 449 (933)
+|.+|++.++
T Consensus 364 sl~yLdv~g~ 373 (419)
T KOG2120|consen 364 SLVYLDVFGC 373 (419)
T ss_pred ceEEEEeccc
Confidence 6666666554
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.38 E-value=9.7e-09 Score=113.73 Aligned_cols=161 Identities=23% Similarity=0.217 Sum_probs=96.4
Q ss_pred ccCCCCCCCEeeCCCCCCccccCccc------------------------cccCCC---CCCCCEEeCCCCcCCCcchhh
Q 002350 112 LFHPLEELQSLDLSVNIFTYDSKVAA------------------------YDSLRS---LKQLKILVLGHNYFDDSIFSY 164 (933)
Q Consensus 112 ~f~~l~~L~~LdLs~n~~~~~~~~~~------------------------~~~l~~---l~~L~~L~Ls~n~l~~~~~~~ 164 (933)
.+..|..||+|.|.++.+.......+ ...+.+ -..|.+.+.++|.+. ....+
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD~S 182 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMDES 182 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHHHH
Confidence 56688899999999887653110000 001111 123455555666554 34455
Q ss_pred hcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCC
Q 002350 165 LNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSL 244 (933)
Q Consensus 165 l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 244 (933)
+.-++.|++|||++|+++.. +.+..+++|++|||++|.+....--....|. |+.|.+++|.++.. ..+.+|.+|
T Consensus 183 Lqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL 256 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSL 256 (1096)
T ss_pred HHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhh
Confidence 56667777777777777654 3566777777777777776653323333444 77777777776632 456677777
Q ss_pred CEEECCCCcCCCCCChhhhhcCCCCceEecccccC
Q 002350 245 EYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 279 (933)
Q Consensus 245 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~ 279 (933)
+.||+++|-+.+.-....+..+..|+.|.|.+|..
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 77777777766554444556666666666666654
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.37 E-value=2.9e-08 Score=87.55 Aligned_cols=88 Identities=24% Similarity=0.384 Sum_probs=56.8
Q ss_pred cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350 733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 812 (933)
Q Consensus 733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 812 (933)
.++.|+|++|.++ .+|+++..++.|+.||++.|.+. ..|..+..|.+|-.||.-+|.+. +||.++---+.....++.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg 154 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG 154 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence 3455777777776 67777777777777777777777 56666666777777777777766 555543222233334556
Q ss_pred CCcCcccCCCC
Q 002350 813 YNNLSGRTPDK 823 (933)
Q Consensus 813 ~N~l~g~~p~~ 823 (933)
++++.+..|.+
T Consensus 155 nepl~~~~~~k 165 (177)
T KOG4579|consen 155 NEPLGDETKKK 165 (177)
T ss_pred CCcccccCccc
Confidence 66666655544
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.34 E-value=7.4e-08 Score=94.83 Aligned_cols=66 Identities=20% Similarity=0.128 Sum_probs=33.3
Q ss_pred CCCCCCEEEcCCCCCcCcCcCC----cccCCCccEEEccCCcCCCCCChhhhh-----cCCCccEEEccCCCCCC
Q 002350 339 NNPKLEVLLLKNNSFSGILQLP----KAKHDFLHHLDISCNNFRGKLPHNMGV-----ILQKLMYMDISKNCFEG 404 (933)
Q Consensus 339 ~l~~L~~L~L~~n~l~~~~~~~----~~~~~~L~~L~Ls~n~l~~~~p~~~~~-----~l~~L~~L~Ls~n~l~~ 404 (933)
.+.+|+.|++.+|-++...+.. ....+.|++|.+.+|-++......++. ..|+|..|-..+|...+
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 3455555555555554332221 223444666666666665554444432 23555666666655443
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.16 E-value=1.4e-07 Score=104.71 Aligned_cols=126 Identities=29% Similarity=0.278 Sum_probs=97.9
Q ss_pred CCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEe
Q 002350 488 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSL 566 (933)
Q Consensus 488 ~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L 566 (933)
.|.+.+.++|.+. .+..++.-++. |+.|+|++|+++... .+..|+.|+.|||+.|++.....-.. ++. |..|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~a-le~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPA-LESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHH-hhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 5778888888887 66667766666 999999999998433 78889999999999999875433333 555 999999
Q ss_pred ecCcCcccCchhhccCCCccEEeCcCCcCcccC-chhhhcCCCccEEEcCCCcCC
Q 002350 567 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRI-PHQINEHSNLRFLLLGGNHLQ 620 (933)
Q Consensus 567 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~ 620 (933)
++|.++.. ..+.++.+|+.||++.|-+.+.- -..+..+..|+.|+|.||++-
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99998755 56778899999999999887531 233456778899999999875
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.07 E-value=2.9e-07 Score=96.42 Aligned_cols=84 Identities=20% Similarity=0.123 Sum_probs=40.7
Q ss_pred CCCCEEeCCCCcCCC--cchhhhcCCCCCCEEecCCCcccCccChhh-hcCCCCCCEEECCCCC-CCCcchhhc-CCCCC
Q 002350 145 KQLKILVLGHNYFDD--SIFSYLNTLPSLCTLILHWNRIEGSQTNQG-ICELKNLFEMNLERNF-IGSPLITCL-KNLTR 219 (933)
Q Consensus 145 ~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l-~~l~~ 219 (933)
..|+.|.+.++.=.+ ..-..-.+++++++|++.++.......... -..++.|++|+|..|. ++......+ ..|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 356777777765322 122223456666666666665222211111 1345666666666543 333222222 24566
Q ss_pred CCEEEccCC
Q 002350 220 LKILDISSN 228 (933)
Q Consensus 220 L~~L~Ls~n 228 (933)
|++|+++++
T Consensus 218 L~~lNlSwc 226 (483)
T KOG4341|consen 218 LKYLNLSWC 226 (483)
T ss_pred HHHhhhccC
Confidence 666666655
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.97 E-value=3.1e-06 Score=83.62 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=19.3
Q ss_pred hcCCCCCCEEecCCCcccCccC---hhhhcCCCCCCEEECCC
Q 002350 165 LNTLPSLCTLILHWNRIEGSQT---NQGICELKNLFEMNLER 203 (933)
Q Consensus 165 l~~l~~L~~L~Ls~n~i~~~~~---~~~l~~l~~L~~L~Ls~ 203 (933)
+..+..++.+|||+|.|..... ...+.+-++|+..+++.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 3446666666666666654322 01233344555555543
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.95 E-value=6.9e-07 Score=79.09 Aligned_cols=134 Identities=22% Similarity=0.208 Sum_probs=88.9
Q ss_pred cceeecCCCcCCCCcch---hccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEe
Q 002350 514 LEILSMSKNHLEGNVPV---QLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN 589 (933)
Q Consensus 514 L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 589 (933)
+..++|++|++- .++. .+.....|+..+|++|.+....+.+- ..+.++.+++++|.++ .+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 444555555443 2222 23334456666777777765444443 5667788888888887 4577788888999999
Q ss_pred CcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchh
Q 002350 590 LRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 651 (933)
Q Consensus 590 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~ 651 (933)
++.|.+. ..|+.+..+.+|-.|+..+|.+. .+|..+-.-+..-..++.++++.+.-|.-+
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL 166 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence 9999888 67788877888888888888887 455554444444455667777776665543
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=4.8e-06 Score=83.48 Aligned_cols=108 Identities=23% Similarity=0.213 Sum_probs=61.8
Q ss_pred CCCEEEcCCCcCCCCcch-hhhcCCCCCCEEECcCCcCCC--cCchhhcccCcCCeEEccCccccccccccccCCCCCCE
Q 002350 415 ELSLLDLSRNYFSGGLSQ-SVVTGCFSLELLDLSNNNFEG--QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQV 491 (933)
Q Consensus 415 ~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 491 (933)
.++.+.+.++.|...-.. .+...++.++.+||.+|.++. ++..-+.++|.|++|+++.|.+...+..--....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 444555555555422222 223456677788888887764 23334557788888888888776433221134567788
Q ss_pred EEccCCcCCCC-ChhhHhhhccccceeecCCCc
Q 002350 492 LDISNNMLSGH-IPHWMGNFSSELEILSMSKNH 523 (933)
Q Consensus 492 L~Ls~n~l~~~-~p~~l~~~~~~L~~L~L~~n~ 523 (933)
|.|.+..+.-. .-..+..+|. ++.|.++.|+
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~-vtelHmS~N~ 157 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPK-VTELHMSDNS 157 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchh-hhhhhhccch
Confidence 88877665421 2223344444 6777777664
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=5.7e-06 Score=97.48 Aligned_cols=135 Identities=24% Similarity=0.283 Sum_probs=68.0
Q ss_pred CCCCCCEEECCCCCCCCc-chhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCc
Q 002350 192 ELKNLFEMNLERNFIGSP-LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 270 (933)
Q Consensus 192 ~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 270 (933)
.+|+|+.|.+++-.+... .-....++++|..||+|+.+++.. ..+++|++|+.|.+.+-.+........+-++++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 345555555555443321 222334556666666666655533 45556666666655554444322233444555555
Q ss_pred eEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEE
Q 002350 271 GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLL 347 (933)
Q Consensus 271 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ 347 (933)
.||+|........ .+....-+.-..+|+|+.||.|++.+.+.+-+.+....++|+.+.
T Consensus 224 vLDIS~~~~~~~~-------------------~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 224 VLDISRDKNNDDT-------------------KIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred eeeccccccccch-------------------HHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 5555432211100 000000111224678888888888887777666665666666544
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.82 E-value=1.1e-05 Score=95.18 Aligned_cols=149 Identities=26% Similarity=0.309 Sum_probs=87.0
Q ss_pred CCCCEeeCCCCCCccccCccccccCC-CCCCCCEEeCCCCcCCC-cchhhhcCCCCCCEEecCCCcccCccChhhhcCCC
Q 002350 117 EELQSLDLSVNIFTYDSKVAAYDSLR-SLKQLKILVLGHNYFDD-SIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELK 194 (933)
Q Consensus 117 ~~L~~LdLs~n~~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~ 194 (933)
.+|++||+++...- .......++ .+|.|++|.+++-.+.. .......++++|+.||+|++.++.. .++++|+
T Consensus 122 ~nL~~LdI~G~~~~---s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELF---SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLK 195 (699)
T ss_pred HhhhhcCccccchh---hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccc
Confidence 46777777765332 111123343 46777777777766543 3344456677777777777777654 4677777
Q ss_pred CCCEEECCCCCCCC-cchhhcCCCCCCCEEEccCCcCCCCC--c----hhccCCCCCCEEECCCCcCCCCCChhhhhcCC
Q 002350 195 NLFEMNLERNFIGS-PLITCLKNLTRLKILDISSNQLNGSL--P----SVISNLTSLEYLDLSHNNFEGMFPLSSLANHS 267 (933)
Q Consensus 195 ~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~--p----~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 267 (933)
+|++|.+.+=.+.. ..-..+-+|++|++||+|........ . +.-..|++|+.||.|+..+...+-...+...+
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHP 275 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCc
Confidence 77777777665543 23345566777777777765444221 1 11134677777777776665544434444444
Q ss_pred CCce
Q 002350 268 KLEG 271 (933)
Q Consensus 268 ~L~~ 271 (933)
+|+.
T Consensus 276 ~L~~ 279 (699)
T KOG3665|consen 276 NLQQ 279 (699)
T ss_pred cHhh
Confidence 4443
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=7.6e-05 Score=80.94 Aligned_cols=74 Identities=14% Similarity=0.267 Sum_probs=46.7
Q ss_pred cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCC-cCCCCCchhhhcCCCCCE
Q 002350 557 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN-HLQGPIPDQLCQLQKLAM 635 (933)
Q Consensus 557 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~ 635 (933)
.+..++.|++++|.++.. |. + -++|+.|+++++.--..+|+.+. ++|+.|++++| .+. .+|. +|+.
T Consensus 50 ~~~~l~~L~Is~c~L~sL-P~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIESL-PV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCccc-CC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccce
Confidence 467788888888877643 41 1 23688888887544446666553 47888888887 443 4553 4566
Q ss_pred EEccCCcC
Q 002350 636 MDLSRNKF 643 (933)
Q Consensus 636 L~Ls~N~l 643 (933)
|+++++..
T Consensus 117 L~L~~n~~ 124 (426)
T PRK15386 117 LEIKGSAT 124 (426)
T ss_pred EEeCCCCC
Confidence 66665543
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=1.7e-05 Score=57.11 Aligned_cols=36 Identities=36% Similarity=0.641 Sum_probs=19.0
Q ss_pred ccCeeeccccccccccchhccCCCCCCEEECcCCeec
Q 002350 757 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 793 (933)
Q Consensus 757 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 793 (933)
+|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555555
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=2.8e-05 Score=55.97 Aligned_cols=37 Identities=43% Similarity=0.698 Sum_probs=32.6
Q ss_pred cccEEEcCCCcCCCCCChhhhhccccCeeecccccccc
Q 002350 733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSG 770 (933)
Q Consensus 733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~ 770 (933)
+|+.|++++|+++ .+|..+++|++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 6889999999999 688889999999999999999994
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.66 E-value=3.4e-06 Score=88.66 Aligned_cols=130 Identities=24% Similarity=0.219 Sum_probs=64.5
Q ss_pred CCCCCCEEEccCCc-CCCCChhhHhhhccccceeecCCCcCCC--CcchhccCCCCCCEEEccCCcCcccc-----Cccc
Q 002350 485 SSTSLQVLDISNNM-LSGHIPHWMGNFSSELEILSMSKNHLEG--NVPVQLNNLERLRILDISENRLSGPI-----ASSL 556 (933)
Q Consensus 485 ~l~~L~~L~Ls~n~-l~~~~p~~l~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~ 556 (933)
+..+|+.|.++.|+ +++.-...++.....|+.+++..+.... .+...-.+++.|+.+.+++|...... ...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 34556666666554 2222222233322336666666554321 12222345667777777766543221 1111
Q ss_pred -cCCCCceEEeecCcCc-ccCchhhccCCCccEEeCcCCcCccc--CchhhhcCCCccEEEc
Q 002350 557 -NLSSVEHLSLQKNALN-GLIPGELFRSCKLVTLNLRDNTFSGR--IPHQINEHSNLRFLLL 614 (933)
Q Consensus 557 -~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L 614 (933)
....|+.+.|++++.. ...-..+..+++|+.+++-+++-... +...-..++++++..+
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 4566777777777643 22223455677787777777654321 1122245666665443
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.52 E-value=0.00018 Score=78.18 Aligned_cols=138 Identities=18% Similarity=0.229 Sum_probs=84.1
Q ss_pred hcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCC-cCCCCcchhccCCCC
Q 002350 459 YMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN-HLEGNVPVQLNNLER 537 (933)
Q Consensus 459 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~ 537 (933)
+..+.+++.|++++|.++ .+|. -..+|++|.+++|.--..+|..+ +.+|+.|++++| .+. .+|. +
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE------S 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc------c
Confidence 455788999999999887 4552 23469999998865444666544 345999999988 444 4553 4
Q ss_pred CCEEEccCCcCccccCccccCCCCceEEeecCcCc--ccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcC
Q 002350 538 LRILDISENRLSGPIASSLNLSSVEHLSLQKNALN--GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 615 (933)
Q Consensus 538 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 615 (933)
|+.|++.++.... ++. -.++|+.|.+.+++.. ..+|..+ -++|++|++++|... ..|..+. .+|+.|+++
T Consensus 114 Le~L~L~~n~~~~-L~~--LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 114 VRSLEIKGSATDS-IKN--VPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred cceEEeCCCCCcc-ccc--CcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 7777777655432 111 1245677776543211 0111111 147888888887765 3454444 477888877
Q ss_pred CCc
Q 002350 616 GNH 618 (933)
Q Consensus 616 ~N~ 618 (933)
.+.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 663
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.48 E-value=0.0002 Score=68.44 Aligned_cols=85 Identities=28% Similarity=0.285 Sum_probs=59.0
Q ss_pred CCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCC-chhhhcCCCCCEE
Q 002350 558 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPI-PDQLCQLQKLAMM 636 (933)
Q Consensus 558 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L 636 (933)
..+...+||++|.+... ..|..++.|.+|.+++|+|+.+.|.--..+++|+.|.|.+|.+.... -+-+..++.|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 34556677777776533 45667778888888888888666655566677888888888876331 1235667788888
Q ss_pred EccCCcCC
Q 002350 637 DLSRNKFS 644 (933)
Q Consensus 637 ~Ls~N~l~ 644 (933)
.+-+|+.+
T Consensus 119 tll~Npv~ 126 (233)
T KOG1644|consen 119 TLLGNPVE 126 (233)
T ss_pred eecCCchh
Confidence 87777765
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.33 E-value=0.00028 Score=67.40 Aligned_cols=106 Identities=27% Similarity=0.265 Sum_probs=59.2
Q ss_pred CCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcc-hhhcCCCCCCCEEE
Q 002350 146 QLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPL-ITCLKNLTRLKILD 224 (933)
Q Consensus 146 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~ 224 (933)
+...+||++|.+.. ...|..++.|.+|.|.+|+|+.+.| ..-.-+++|+.|.|.+|+|.... ..-+..|++|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 34445555555432 1234455555666666666655444 22234455666666666654311 22356677788888
Q ss_pred ccCCcCCCCCc---hhccCCCCCCEEECCCCcC
Q 002350 225 ISSNQLNGSLP---SVISNLTSLEYLDLSHNNF 254 (933)
Q Consensus 225 Ls~n~l~~~~p---~~l~~l~~L~~L~L~~n~l 254 (933)
+-+|.++..-- -.+..+++|+.||+..-..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 77777664321 3466788888888776543
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.26 E-value=0.0005 Score=63.70 Aligned_cols=104 Identities=14% Similarity=0.213 Sum_probs=36.1
Q ss_pred HhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCC
Q 002350 337 LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKEL 416 (933)
Q Consensus 337 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 416 (933)
+.++++|+.+.+.. .+..+....|..+++|+.+.+..+ +. .++...+..+++++.+.+.. .+.......+..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccc
Confidence 33444444444442 333343344444444555554443 32 33444444444455555543 2221222334444555
Q ss_pred CEEEcCCCcCCCCcchhhhcCCCCCCEEECc
Q 002350 417 SLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 447 (933)
Q Consensus 417 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 447 (933)
+.+++..+ +. .++...+..+ .|+.+.+.
T Consensus 84 ~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-IT-EIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--B-EEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-cc-EEchhhhcCC-CceEEEEC
Confidence 55555433 22 3344444444 45555444
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.06 E-value=0.00027 Score=70.65 Aligned_cols=66 Identities=27% Similarity=0.269 Sum_probs=34.5
Q ss_pred cCCCCCCCCEEeCCCC--cCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCC
Q 002350 140 SLRSLKQLKILVLGHN--YFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNF 205 (933)
Q Consensus 140 ~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~ 205 (933)
.+-.+++|++|.+|.| .+.+.++.....+++|++|++++|+|........+..+++|..|++..|.
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 3556667777777777 44444444444556666666666666532222223344444444444443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.85 E-value=0.0027 Score=58.70 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=24.7
Q ss_pred cccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecC
Q 002350 109 NMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILH 177 (933)
Q Consensus 109 ~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 177 (933)
+..+|...++|+.+.+.. .+... ...+|..+++|+.+++..+ +.......|.++++|+.+.+.
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I----~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKI----GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-----TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred CHHHHhCCCCCCEEEECC-CeeEe----Chhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 334556666666666553 22211 1144555555555555543 433333444445445555553
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.00018 Score=71.83 Aligned_cols=100 Identities=31% Similarity=0.323 Sum_probs=64.5
Q ss_pred CCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCc-chhhcCCCCCCCE
Q 002350 144 LKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSP-LITCLKNLTRLKI 222 (933)
Q Consensus 144 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~ 222 (933)
+.+.+.|++.++.+++. +...+++.|++|.||-|+|+...| +..+++|++|.|..|.|.+. -...+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 34445555656555432 234567777777777777766544 67777788888887777652 2345677888888
Q ss_pred EEccCCcCCCCCch-----hccCCCCCCEEE
Q 002350 223 LDISSNQLNGSLPS-----VISNLTSLEYLD 248 (933)
Q Consensus 223 L~Ls~n~l~~~~p~-----~l~~l~~L~~L~ 248 (933)
|.|..|...+..+. .+..|++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888877765543 345567777665
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.44 E-value=0.0011 Score=77.09 Aligned_cols=111 Identities=19% Similarity=0.037 Sum_probs=54.4
Q ss_pred CCCCCEEeCCCCcCCCc--chhhhcCCCCCCEEecCCC-cccCccC---hhhhcCCCCCCEEECCCCC-CCCcchhhcCC
Q 002350 144 LKQLKILVLGHNYFDDS--IFSYLNTLPSLCTLILHWN-RIEGSQT---NQGICELKNLFEMNLERNF-IGSPLITCLKN 216 (933)
Q Consensus 144 l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n-~i~~~~~---~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~ 216 (933)
++.|+.|.+..+.-... .-.....++.|+.|+++++ ......+ ......+++|+.|+++++. +++.....++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666665532211 2344455666666666652 1111111 1123344666666666666 55444444443
Q ss_pred -CCCCCEEEccCCc-CCCCCchh-ccCCCCCCEEECCCCcC
Q 002350 217 -LTRLKILDISSNQ-LNGSLPSV-ISNLTSLEYLDLSHNNF 254 (933)
Q Consensus 217 -l~~L~~L~Ls~n~-l~~~~p~~-l~~l~~L~~L~L~~n~l 254 (933)
|++|++|.+.++. ++...-.. ...+++|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 5666666655554 34322222 23455566666665553
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.42 E-value=0.0021 Score=64.35 Aligned_cols=66 Identities=23% Similarity=0.309 Sum_probs=32.6
Q ss_pred hcCCCCCCEEECCCC--CCCCcchhhcCCCCCCCEEEccCCcCCCC-CchhccCCCCCCEEECCCCcCC
Q 002350 190 ICELKNLFEMNLERN--FIGSPLITCLKNLTRLKILDISSNQLNGS-LPSVISNLTSLEYLDLSHNNFE 255 (933)
Q Consensus 190 l~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~ 255 (933)
+-.|++|++|.++.| .+.+.++....++++|++|++++|++... --..+..+.+|..|++.+|..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 444555555555555 33443333334456666666666655520 0012334455556666655543
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.00018 Score=71.78 Aligned_cols=102 Identities=24% Similarity=0.149 Sum_probs=73.8
Q ss_pred CCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCC
Q 002350 115 PLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELK 194 (933)
Q Consensus 115 ~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~ 194 (933)
.+.+.+.|+..++.+++. ....+++.|++|.||-|.|+..-| +..|++|+.|.|..|.|.......-+.+++
T Consensus 17 dl~~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI------SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHHHhhhhcccCCCccHH------HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 456677778887777653 235678888888888888875433 778888888888888887665555677889
Q ss_pred CCCEEECCCCCCCCcch-----hhcCCCCCCCEEE
Q 002350 195 NLFEMNLERNFIGSPLI-----TCLKNLTRLKILD 224 (933)
Q Consensus 195 ~L~~L~Ls~n~l~~~~~-----~~l~~l~~L~~L~ 224 (933)
+|+.|.|..|.-.+..+ ..+.-|++|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999998887555332 2345677777776
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.16 E-value=0.0017 Score=75.66 Aligned_cols=239 Identities=20% Similarity=0.098 Sum_probs=129.7
Q ss_pred CCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCC-cCCCc----chhhhcCCCCCCEEecCCCc-ccCccCh
Q 002350 114 HPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN-YFDDS----IFSYLNTLPSLCTLILHWNR-IEGSQTN 187 (933)
Q Consensus 114 ~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~-i~~~~~~ 187 (933)
...+.|+.|.+..+.-..... .......+++|+.|+++++ ..... .......+++|+.|+++++. ++...-
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l- 261 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL- 261 (482)
T ss_pred hhCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-
Confidence 357889999888774322110 1145677899999999873 21111 12344567999999999988 543333
Q ss_pred hhhc-CCCCCCEEECCCCC-CCCcchhhc-CCCCCCCEEEccCCcCCCC--CchhccCCCCCCEEECCCCcCCCCCChhh
Q 002350 188 QGIC-ELKNLFEMNLERNF-IGSPLITCL-KNLTRLKILDISSNQLNGS--LPSVISNLTSLEYLDLSHNNFEGMFPLSS 262 (933)
Q Consensus 188 ~~l~-~l~~L~~L~Ls~n~-l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~~~~~ 262 (933)
..+. .+++|++|.+.+|. +++.....+ ..+++|++|+++++..... +.....++++|+.|.+....-
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~-------- 333 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG-------- 333 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC--------
Confidence 3333 38899999988888 666544443 4688899999998865421 223344567666655433221
Q ss_pred hhcCCCCceEecccccCcc--ccccCCCCCCCcceEEEccCCCCCCCC-chhhhCCCCCCEEEccCCCCcccchhHHHhC
Q 002350 263 LANHSKLEGLLLSTRNNTL--HVKTENWLPTSQLIVLGLTKCNLNGSY-PDFLLHQYHLKYLDLSHNKLVGNFPTWLLRN 339 (933)
Q Consensus 263 l~~l~~L~~L~L~~~~~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 339 (933)
+..++.+.+....... .........+++++.+.+..+...... ...+..++.|+ ..+... ...
T Consensus 334 ---c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~----------~~~ 399 (482)
T KOG1947|consen 334 ---CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR----------LCR 399 (482)
T ss_pred ---CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH----------hcc
Confidence 2222222222211111 122223455667777777776633222 23344454442 111111 112
Q ss_pred CCCCCEEEcCCCCCcCcCcCC-ccc-CCCccEEEccCCcC
Q 002350 340 NPKLEVLLLKNNSFSGILQLP-KAK-HDFLHHLDISCNNF 377 (933)
Q Consensus 340 l~~L~~L~L~~n~l~~~~~~~-~~~-~~~L~~L~Ls~n~l 377 (933)
...++.|+++.+......... ... +..++.+++.++..
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 223777777776644332111 111 55666677766653
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.69 E-value=0.0047 Score=36.90 Aligned_cols=18 Identities=50% Similarity=0.735 Sum_probs=7.8
Q ss_pred CCEEECcCCeecccCCcCC
Q 002350 782 IESLDISYNKLTGQIPPQL 800 (933)
Q Consensus 782 L~~LdLs~N~l~~~ip~~l 800 (933)
|++|||++|+++ .+|++|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 344444444444 344333
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.39 E-value=0.0081 Score=35.88 Aligned_cols=20 Identities=60% Similarity=0.833 Sum_probs=11.9
Q ss_pred cCeeeccccccccccchhccC
Q 002350 758 ILALNLSNNSLSGSIPESFSN 778 (933)
Q Consensus 758 L~~L~Ls~N~l~~~~p~~~~~ 778 (933)
|++|||++|+++ .+|.+|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 566666666666 55555544
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.85 E-value=0.0012 Score=74.67 Aligned_cols=36 Identities=36% Similarity=0.341 Sum_probs=20.6
Q ss_pred CCEEeCCCCcCCCcc----hhhhcCCCCCCEEecCCCccc
Q 002350 147 LKILVLGHNYFDDSI----FSYLNTLPSLCTLILHWNRIE 182 (933)
Q Consensus 147 L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~n~i~ 182 (933)
+..|.|.+|.+.... ...+.....|..|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 556666666655433 333455666666666666665
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.48 E-value=0.0011 Score=75.01 Aligned_cols=193 Identities=24% Similarity=0.192 Sum_probs=117.2
Q ss_pred CCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhh----cCC-CCCCEEecCCCcccCccC---hh
Q 002350 117 EELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYL----NTL-PSLCTLILHWNRIEGSQT---NQ 188 (933)
Q Consensus 117 ~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l----~~l-~~L~~L~Ls~n~i~~~~~---~~ 188 (933)
..++.|+|.+|.+..........++.....|..|++++|.+.+.....+ ... ..|++|++..|.+++... ..
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 3488889999988776665556778889999999999999875433333 222 556778888887775433 23
Q ss_pred hhcCCCCCCEEECCCCCCCC----cchhhcC----CCCCCCEEEccCCcCCCCC----chhccCCCC-CCEEECCCCcCC
Q 002350 189 GICELKNLFEMNLERNFIGS----PLITCLK----NLTRLKILDISSNQLNGSL----PSVISNLTS-LEYLDLSHNNFE 255 (933)
Q Consensus 189 ~l~~l~~L~~L~Ls~n~l~~----~~~~~l~----~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~-L~~L~L~~n~l~ 255 (933)
.+.+..+++.++++.|.+.. .++..+. ...++++|.+++|.++... ...+...++ ++.|++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 45567778888888887642 1223333 3567777777777666321 123334444 555666666654
Q ss_pred CCCChhhhhcCCCCceEecccccCccccccCCCCCC-CcceEEEccCCCCCCCC----chhhhCCCCCCEEEccCCCCcc
Q 002350 256 GMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPT-SQLIVLGLTKCNLNGSY----PDFLLHQYHLKYLDLSHNKLVG 330 (933)
Q Consensus 256 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~ 330 (933)
+..-.. + ...+... ..+++++++.|.++... .+.+..+++++.+.++.|.+..
T Consensus 247 d~g~~~-L---------------------~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEK-L---------------------LPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHH-H---------------------HHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 321000 0 0011112 45667777777776543 3345566777777777777664
Q ss_pred c
Q 002350 331 N 331 (933)
Q Consensus 331 ~ 331 (933)
.
T Consensus 305 ~ 305 (478)
T KOG4308|consen 305 Y 305 (478)
T ss_pred H
Confidence 3
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.99 E-value=0.0064 Score=59.45 Aligned_cols=83 Identities=22% Similarity=0.245 Sum_probs=73.3
Q ss_pred CcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEc
Q 002350 732 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 811 (933)
Q Consensus 732 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 811 (933)
...+.||++.|++. ..-..+.-++.|..|++|.|.+. ..|..++++..+..+++..|.++ ..|.++..++.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 45678999999987 45566788899999999999998 78999999999999999999988 78999999999999999
Q ss_pred cCCcCc
Q 002350 812 SYNNLS 817 (933)
Q Consensus 812 s~N~l~ 817 (933)
-.|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 999864
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.05 E-value=0.16 Score=28.06 Aligned_cols=11 Identities=45% Similarity=0.833 Sum_probs=3.7
Q ss_pred CCEEECcCCee
Q 002350 782 IESLDISYNKL 792 (933)
Q Consensus 782 L~~LdLs~N~l 792 (933)
|+.|+|++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.33 E-value=0.076 Score=51.35 Aligned_cols=32 Identities=16% Similarity=0.001 Sum_probs=15.1
Q ss_pred CEEeCCCCcCCCcchhhhcCCCCCCEEecCCC
Q 002350 148 KILVLGHNYFDDSIFSYLNTLPSLCTLILHWN 179 (933)
Q Consensus 148 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 179 (933)
+.+|-++..|.......+.+++.++.|.+.+|
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 34444444444444444444444444444444
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.83 E-value=0.51 Score=29.38 Aligned_cols=13 Identities=38% Similarity=0.624 Sum_probs=5.5
Q ss_pred CCCEEECcCCeec
Q 002350 781 MIESLDISYNKLT 793 (933)
Q Consensus 781 ~L~~LdLs~N~l~ 793 (933)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.83 E-value=0.51 Score=29.38 Aligned_cols=13 Identities=38% Similarity=0.624 Sum_probs=5.5
Q ss_pred CCCEEECcCCeec
Q 002350 781 MIESLDISYNKLT 793 (933)
Q Consensus 781 ~L~~LdLs~N~l~ 793 (933)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.23 E-value=0.023 Score=55.76 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=58.2
Q ss_pred hcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCC
Q 002350 165 LNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSL 244 (933)
Q Consensus 165 l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 244 (933)
+.....-+.||++.|++.... ..++.++.|..|+++.|++.- .|..++.+..++++++..|..+ ..|.+++..+.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~--~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLG--KNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHhhc--cchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 444455555555555544322 235556667777777776654 5677777777888888777776 677788888888
Q ss_pred CEEECCCCcCC
Q 002350 245 EYLDLSHNNFE 255 (933)
Q Consensus 245 ~~L~L~~n~l~ 255 (933)
+++++..+.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88888877754
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.67 E-value=0.65 Score=28.88 Aligned_cols=15 Identities=47% Similarity=0.598 Sum_probs=9.0
Q ss_pred cccCeeecccccccc
Q 002350 756 QAILALNLSNNSLSG 770 (933)
Q Consensus 756 ~~L~~L~Ls~N~l~~ 770 (933)
++|+.|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 456666666666663
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.67 E-value=0.65 Score=28.88 Aligned_cols=15 Identities=47% Similarity=0.598 Sum_probs=9.0
Q ss_pred cccCeeecccccccc
Q 002350 756 QAILALNLSNNSLSG 770 (933)
Q Consensus 756 ~~L~~L~Ls~N~l~~ 770 (933)
++|+.|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 456666666666663
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.25 E-value=0.25 Score=30.09 Aligned_cols=13 Identities=38% Similarity=0.447 Sum_probs=4.5
Q ss_pred CCCEEECCCCCCC
Q 002350 195 NLFEMNLERNFIG 207 (933)
Q Consensus 195 ~L~~L~Ls~n~l~ 207 (933)
+|++|+|++|.++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444433
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=79.76 E-value=0.43 Score=29.04 Aligned_cols=13 Identities=46% Similarity=0.733 Sum_probs=4.6
Q ss_pred CCCEEECcCCeec
Q 002350 781 MIESLDISYNKLT 793 (933)
Q Consensus 781 ~L~~LdLs~N~l~ 793 (933)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.42 E-value=0.39 Score=46.59 Aligned_cols=57 Identities=32% Similarity=0.424 Sum_probs=29.6
Q ss_pred CCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCc-CCCcchhhhcC-CCCCCEEecCCC
Q 002350 119 LQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNY-FDDSIFSYLNT-LPSLCTLILHWN 179 (933)
Q Consensus 119 L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~-l~~L~~L~Ls~n 179 (933)
++.+|-++..+.+. +++.+..++.++.|.+.++. +.+.-...+++ .++|+.|++++|
T Consensus 103 IeaVDAsds~I~~e----Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC 161 (221)
T KOG3864|consen 103 IEAVDASDSSIMYE----GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGC 161 (221)
T ss_pred EEEEecCCchHHHH----HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCC
Confidence 45556665554432 23566777777777777765 33322233322 344444444444
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=73.55 E-value=19 Score=39.90 Aligned_cols=17 Identities=41% Similarity=0.362 Sum_probs=9.4
Q ss_pred CCCEEECCCCcCCCCCC
Q 002350 243 SLEYLDLSHNNFEGMFP 259 (933)
Q Consensus 243 ~L~~L~L~~n~l~~~~~ 259 (933)
.+.+++++.|.....+|
T Consensus 215 ~lteldls~n~~Kddip 231 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIP 231 (553)
T ss_pred cccccccccCCCCccch
Confidence 35566666665554444
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.92 E-value=2.7 Score=26.24 Aligned_cols=15 Identities=47% Similarity=0.676 Sum_probs=11.0
Q ss_pred CCCCCEEECcCCeec
Q 002350 779 LKMIESLDISYNKLT 793 (933)
Q Consensus 779 l~~L~~LdLs~N~l~ 793 (933)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 456778888888775
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.16 E-value=41 Score=37.45 Aligned_cols=35 Identities=14% Similarity=0.005 Sum_probs=17.8
Q ss_pred CCCCEEEccCCCCcccchhHH-HhCCCCCCEEEcCC
Q 002350 316 YHLKYLDLSHNKLVGNFPTWL-LRNNPKLEVLLLKN 350 (933)
Q Consensus 316 ~~L~~L~Ls~n~l~~~~p~~~-~~~l~~L~~L~L~~ 350 (933)
.++++|++++|.+.|..-... ...-+..+.+++..
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccc
Confidence 347777777777665543221 01223455555543
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=59.20 E-value=6.3 Score=24.56 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=6.4
Q ss_pred CCCEEECcCCeec
Q 002350 781 MIESLDISYNKLT 793 (933)
Q Consensus 781 ~L~~LdLs~N~l~ 793 (933)
+|+.|+.++|+|+
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3445555555544
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.81 E-value=5.9 Score=25.15 Aligned_cols=14 Identities=36% Similarity=0.600 Sum_probs=6.9
Q ss_pred CCCEEECCCCCCCC
Q 002350 195 NLFEMNLERNFIGS 208 (933)
Q Consensus 195 ~L~~L~Ls~n~l~~ 208 (933)
+|++|+|++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 44555555555443
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.99 E-value=22 Score=40.41 Aligned_cols=14 Identities=21% Similarity=0.045 Sum_probs=6.3
Q ss_pred CCccEEEccCCcCC
Q 002350 365 DFLHHLDISCNNFR 378 (933)
Q Consensus 365 ~~L~~L~Ls~n~l~ 378 (933)
..|++|-+.+|.+.
T Consensus 270 l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 270 LPLEELVLEGNPLC 283 (585)
T ss_pred CCHHHeeecCCccc
Confidence 33444444444443
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=36.31 E-value=19 Score=48.94 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=23.2
Q ss_pred eccccccccccchhccCCCCCCEEECcCCeec
Q 002350 762 NLSNNSLSGSIPESFSNLKMIESLDISYNKLT 793 (933)
Q Consensus 762 ~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 793 (933)
||++|+|+...+..|.++++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57777777666677777777777777777664
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.12 E-value=27 Score=39.66 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=9.6
Q ss_pred CCCCCCEEEcCCCCCcCc
Q 002350 339 NNPKLEVLLLKNNSFSGI 356 (933)
Q Consensus 339 ~l~~L~~L~L~~n~l~~~ 356 (933)
+.+.+..+.|++|++..+
T Consensus 216 n~p~i~sl~lsnNrL~~L 233 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHL 233 (585)
T ss_pred CCcceeeeecccchhhch
Confidence 445555555555555444
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.56 E-value=29 Score=21.41 Aligned_cols=9 Identities=33% Similarity=0.401 Sum_probs=3.5
Q ss_pred CCEEECCCC
Q 002350 196 LFEMNLERN 204 (933)
Q Consensus 196 L~~L~Ls~n 204 (933)
|++|+|++|
T Consensus 4 L~~L~l~~C 12 (26)
T smart00367 4 LRELDLSGC 12 (26)
T ss_pred CCEeCCCCC
Confidence 333333333
No 96
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=29.36 E-value=48 Score=23.72 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcCC-----CCCh--HHHHHHHHHhhhhcc
Q 002350 10 ISVIMITVLMNEMHGY-----KACL--ETERTALLQIKSFFI 44 (933)
Q Consensus 10 ~~~~~~~~~~~~~~~~-----~~~~--~~~~~~ll~~k~~~~ 44 (933)
|.-.|+++..+.+.+. .-|. ..||+|||+-++-+.
T Consensus 3 iawywivli~lv~~gy~~hmkrycrafrqdrdallear~kl~ 44 (54)
T PF13260_consen 3 IAWYWIVLIVLVVVGYFCHMKRYCRAFRQDRDALLEARNKLF 44 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455666665544432 2243 589999999997763
No 97
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=27.95 E-value=30 Score=31.72 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=5.7
Q ss_pred HHHHHHHhhhheeec
Q 002350 891 VTVILVLIAILWINS 905 (933)
Q Consensus 891 ~~~~~~~~~~~~~~~ 905 (933)
++++++++++.++.+
T Consensus 10 ~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 10 VAILLFLFLFYCHNR 24 (130)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333334444433
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.22 E-value=42 Score=46.01 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=27.7
Q ss_pred EcCCCcCCCCCChhhhhccccCeeeccccccc
Q 002350 738 DLSCNQLTGEIPSDIGQLQAILALNLSNNSLS 769 (933)
Q Consensus 738 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 769 (933)
||++|+|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 78999999666667888999999999999775
No 99
>PF15102 TMEM154: TMEM154 protein family
Probab=23.87 E-value=87 Score=29.03 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=12.7
Q ss_pred eeehhh-hHHHHHHHHHhhhheeeccchh
Q 002350 882 LYSSFG-ASYVTVILVLIAILWINSYWRR 909 (933)
Q Consensus 882 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 909 (933)
+++.+. +.++++++++++++.+.|+||.
T Consensus 59 LmIlIP~VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred EEEeHHHHHHHHHHHHHHHheeEEeeccc
Confidence 344443 3344444444444444455555
No 100
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=21.88 E-value=49 Score=27.77 Aligned_cols=29 Identities=7% Similarity=0.234 Sum_probs=19.5
Q ss_pred eeeeehhhhHHHHHHHHHhhhheeeccch
Q 002350 880 VTLYSSFGASYVTVILVLIAILWINSYWR 908 (933)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 908 (933)
.|.|...+.|++++++++..+.+...+|+
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 56666777777777777666666655555
Done!