Query 002350
Match_columns 933
No_of_seqs 862 out of 6244
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 22:44:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.6E-91 5.6E-96 856.6 47.8 716 24-853 5-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.8E-72 9.6E-77 686.6 40.7 652 118-838 51-715 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 5.2E-59 1.8E-63 564.7 49.9 591 117-822 25-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-58 4.9E-63 560.8 48.9 588 121-845 8-627 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-54 6.2E-59 534.6 39.6 525 169-821 24-564 (844)
6 3t6q_A CD180 antigen; protein- 100.0 2.2E-53 7.5E-58 508.3 44.7 538 120-821 15-564 (606)
7 3t6q_A CD180 antigen; protein- 100.0 2.4E-52 8.2E-57 499.3 44.4 517 117-648 33-564 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 4.5E-52 1.5E-56 513.3 44.0 528 173-846 8-566 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-52 6.3E-57 500.3 36.9 536 120-821 14-562 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-50 6.7E-55 482.8 40.1 512 117-649 32-563 (606)
11 4eco_A Uncharacterized protein 100.0 2E-50 6.8E-55 482.0 24.6 521 27-644 26-600 (636)
12 4ecn_A Leucine-rich repeat pro 100.0 1.5E-48 5.3E-53 471.9 33.3 461 26-549 264-840 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 3.3E-47 1.1E-51 451.6 34.5 495 171-823 30-537 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 6.5E-46 2.2E-50 440.6 36.2 494 117-649 28-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 3.4E-45 1.2E-49 432.1 37.5 486 118-648 6-514 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.9E-45 1E-49 432.6 34.3 488 72-624 3-514 (549)
17 4eco_A Uncharacterized protein 100.0 1.8E-46 6.1E-51 447.9 18.9 437 292-821 81-604 (636)
18 4g8a_A TOLL-like receptor 4; l 100.0 2.6E-43 9E-48 424.1 38.9 277 459-821 302-584 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 4.2E-44 1.4E-48 419.5 26.9 457 120-648 3-485 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 4.9E-44 1.7E-48 418.9 26.0 461 172-821 3-485 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 2.3E-42 8E-47 415.8 38.2 545 145-866 52-613 (635)
22 4ecn_A Leucine-rich repeat pro 100.0 2.2E-43 7.6E-48 426.9 28.0 439 292-821 323-844 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.1E-41 1.1E-45 398.5 27.0 324 393-822 172-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-40 3.6E-45 393.9 24.4 180 463-649 331-515 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 1.7E-39 5.7E-44 373.9 28.6 375 369-826 14-417 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 3.5E-39 1.2E-43 367.8 20.2 420 193-822 10-434 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 5.6E-38 1.9E-42 361.2 27.8 367 341-798 30-413 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 5.1E-38 1.8E-42 358.1 23.6 390 291-823 10-417 (454)
29 1ogq_A PGIP-2, polygalacturona 100.0 9.4E-38 3.2E-42 339.0 15.6 296 26-376 1-302 (313)
30 2id5_A Lingo-1, leucine rich r 100.0 9.3E-36 3.2E-40 344.6 24.1 346 418-845 15-361 (477)
31 1o6v_A Internalin A; bacterial 100.0 3E-34 1E-38 330.3 34.3 324 389-819 67-390 (466)
32 1o6v_A Internalin A; bacterial 100.0 8.3E-34 2.8E-38 326.6 37.2 348 341-799 46-393 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 3.4E-35 1.2E-39 335.2 24.8 354 339-823 40-393 (457)
34 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-34 3.7E-39 331.0 27.9 357 290-802 40-396 (457)
35 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-34 4.7E-39 314.1 18.2 257 513-849 51-312 (313)
36 2id5_A Lingo-1, leucine rich r 100.0 7.8E-34 2.7E-38 328.4 23.7 347 368-822 14-361 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 9.5E-33 3.2E-37 310.4 24.0 333 413-843 44-377 (390)
38 3oja_B Anopheles plasmodium-re 100.0 1.2E-32 4E-37 326.8 23.7 335 413-844 50-384 (597)
39 4fmz_A Internalin; leucine ric 100.0 4.7E-31 1.6E-35 291.7 29.4 304 389-817 43-346 (347)
40 3o6n_A APL1; leucine-rich repe 100.0 1.7E-31 5.9E-36 300.1 25.5 312 115-454 43-354 (390)
41 3oja_B Anopheles plasmodium-re 100.0 2.3E-31 7.8E-36 315.7 26.2 313 115-455 49-361 (597)
42 4fmz_A Internalin; leucine ric 100.0 3.5E-30 1.2E-34 284.7 32.7 307 312-644 40-346 (347)
43 1z7x_W Ribonuclease inhibitor; 100.0 7.4E-34 2.5E-38 327.4 0.5 279 365-644 3-326 (461)
44 2ft3_A Biglycan; proteoglycan, 100.0 1.4E-29 4.6E-34 277.9 24.2 287 415-815 34-331 (332)
45 1xku_A Decorin; proteoglycan, 100.0 4.1E-29 1.4E-33 273.8 26.0 270 440-815 53-330 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 5.8E-32 2E-36 311.6 1.1 344 308-652 48-448 (461)
47 1xku_A Decorin; proteoglycan, 100.0 2.5E-28 8.5E-33 267.6 29.5 250 391-651 32-283 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 6.8E-29 2.3E-33 272.2 24.7 287 342-642 34-331 (332)
49 4fcg_A Uncharacterized protein 100.0 5.3E-30 1.8E-34 279.6 12.7 275 26-355 22-315 (328)
50 3ogk_B Coronatine-insensitive 100.0 1.5E-30 5.1E-35 309.9 5.7 412 110-526 66-527 (592)
51 3ogk_B Coronatine-insensitive 100.0 9.4E-30 3.2E-34 303.0 6.6 397 339-814 110-548 (592)
52 2z80_A TOLL-like receptor 2, v 99.9 6.8E-28 2.3E-32 266.8 14.4 283 437-822 29-319 (353)
53 2z80_A TOLL-like receptor 2, v 99.9 1.5E-27 5.2E-32 263.9 17.0 285 411-797 28-318 (353)
54 2z66_A Variable lymphocyte rec 99.9 2.6E-27 9E-32 256.5 17.4 249 491-821 11-265 (306)
55 4fcg_A Uncharacterized protein 99.9 5.8E-27 2E-31 255.6 18.2 222 514-817 83-314 (328)
56 3zyi_A Leucine-rich repeat-con 99.9 2.8E-26 9.7E-31 262.6 22.3 250 489-821 56-307 (452)
57 3zyj_A Leucine-rich repeat-con 99.9 4.2E-26 1.4E-30 260.3 22.4 250 489-821 45-296 (440)
58 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-26 4.9E-31 247.9 16.2 208 537-821 33-242 (285)
59 2p1m_B Transport inhibitor res 99.9 6.6E-29 2.3E-33 295.8 -2.3 456 71-569 33-541 (594)
60 3zyj_A Leucine-rich repeat-con 99.9 6.2E-26 2.1E-30 258.9 22.2 250 514-845 45-297 (440)
61 1ozn_A Reticulon 4 receptor; N 99.9 2.2E-26 7.6E-31 246.4 16.0 252 490-823 14-267 (285)
62 3zyi_A Leucine-rich repeat-con 99.9 9.5E-26 3.3E-30 258.2 22.2 250 514-845 56-308 (452)
63 1wwl_A Monocyte differentiatio 99.9 1.7E-27 5.7E-32 258.4 6.8 250 484-818 40-310 (312)
64 2z66_A Variable lymphocyte rec 99.9 9.5E-26 3.3E-30 244.3 20.6 231 414-647 28-264 (306)
65 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-27 7.3E-32 258.2 5.2 264 467-821 14-280 (317)
66 1wwl_A Monocyte differentiatio 99.9 3.3E-27 1.1E-31 256.1 6.0 249 460-795 40-311 (312)
67 2p1m_B Transport inhibitor res 99.9 8E-28 2.7E-32 286.5 1.0 273 339-615 103-405 (594)
68 3g06_A SSPH2 (leucine-rich rep 99.9 2.7E-24 9.2E-29 252.1 26.4 261 415-821 41-301 (622)
69 3oja_A Leucine-rich immune mol 99.9 9.1E-26 3.1E-30 259.6 12.3 215 514-817 36-250 (487)
70 3oja_A Leucine-rich immune mol 99.9 3.8E-26 1.3E-30 262.8 9.0 235 487-812 34-270 (487)
71 3o53_A Protein LRIM1, AGAP0063 99.9 2.6E-26 9E-31 249.6 6.4 267 367-649 12-281 (317)
72 2z62_A TOLL-like receptor 4, v 99.9 5.2E-24 1.8E-28 226.8 20.7 209 537-823 29-243 (276)
73 3g06_A SSPH2 (leucine-rich rep 99.9 2.3E-23 7.7E-28 244.2 25.6 264 318-628 42-305 (622)
74 2o6q_A Variable lymphocyte rec 99.9 1.1E-22 3.8E-27 215.5 22.2 207 537-822 17-223 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 6.3E-23 2.1E-27 218.4 19.7 227 492-797 12-241 (276)
76 3rfs_A Internalin B, repeat mo 99.9 3.3E-23 1.1E-27 219.7 16.0 221 514-823 21-241 (272)
77 2o6q_A Variable lymphocyte rec 99.9 3E-22 1E-26 212.2 22.7 169 70-255 2-170 (270)
78 1p9a_G Platelet glycoprotein I 99.9 2.6E-22 8.7E-27 214.5 19.9 206 532-820 6-211 (290)
79 1p9a_G Platelet glycoprotein I 99.9 2.4E-22 8.1E-27 214.8 19.2 205 557-844 8-212 (290)
80 3goz_A Leucine-rich repeat-con 99.9 3.7E-23 1.3E-27 229.2 9.6 225 419-644 3-266 (362)
81 3rfs_A Internalin B, repeat mo 99.9 2.7E-22 9.1E-27 212.7 15.8 204 514-804 43-246 (272)
82 3goz_A Leucine-rich repeat-con 99.9 3.4E-23 1.2E-27 229.5 8.7 177 468-644 3-209 (362)
83 2ca6_A RAN GTPase-activating p 99.9 1.5E-23 5.1E-28 234.9 2.9 243 506-821 27-320 (386)
84 3m19_A Variable lymphocyte rec 99.9 1.5E-21 5.2E-26 204.3 16.4 183 560-822 15-197 (251)
85 4glp_A Monocyte differentiatio 99.9 6E-22 2E-26 214.5 11.8 80 733-817 225-307 (310)
86 2ast_B S-phase kinase-associat 99.9 3.4E-22 1.2E-26 219.5 9.2 249 488-822 48-311 (336)
87 2ast_B S-phase kinase-associat 99.9 1.2E-21 4.3E-26 215.0 13.0 197 441-642 49-258 (336)
88 2ca6_A RAN GTPase-activating p 99.9 1.6E-22 5.4E-27 226.6 5.0 248 381-648 24-320 (386)
89 4glp_A Monocyte differentiatio 99.8 1.2E-21 4.2E-26 212.1 11.1 223 537-839 65-306 (310)
90 2xwt_C Thyrotropin receptor; s 99.8 7.3E-21 2.5E-25 197.6 14.3 78 733-814 156-236 (239)
91 1h6u_A Internalin H; cell adhe 99.8 1E-20 3.5E-25 204.2 15.7 193 534-818 39-231 (308)
92 3m19_A Variable lymphocyte rec 99.8 4.4E-20 1.5E-24 193.1 19.1 181 537-796 15-195 (251)
93 1h6u_A Internalin H; cell adhe 99.8 4.3E-20 1.5E-24 199.3 19.0 189 514-794 43-231 (308)
94 2xwt_C Thyrotropin receptor; s 99.8 9.4E-21 3.2E-25 196.8 12.9 201 558-837 30-236 (239)
95 2o6s_A Variable lymphocyte rec 99.8 6.9E-20 2.4E-24 185.8 16.2 136 116-256 27-162 (208)
96 3cvr_A Invasion plasmid antige 99.8 1.6E-19 5.4E-24 208.9 14.4 113 514-644 61-173 (571)
97 4ay9_X Follicle-stimulating ho 99.8 4.9E-19 1.7E-23 194.9 16.2 239 490-815 12-257 (350)
98 2o6s_A Variable lymphocyte rec 99.8 3.9E-19 1.3E-23 180.2 14.0 86 559-644 52-137 (208)
99 4ay9_X Follicle-stimulating ho 99.8 1.6E-18 5.5E-23 190.8 15.7 241 368-641 12-256 (350)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-18 4.7E-23 177.4 13.8 156 586-821 14-170 (220)
101 3cvr_A Invasion plasmid antige 99.8 1.7E-18 6E-23 200.2 15.2 186 415-629 60-252 (571)
102 2v9t_B SLIT homolog 2 protein 99.8 2.6E-18 8.9E-23 175.4 13.3 156 586-821 14-169 (220)
103 3e6j_A Variable lymphocyte rec 99.8 1.6E-17 5.6E-22 170.6 18.2 160 70-258 16-175 (229)
104 2v9t_B SLIT homolog 2 protein 99.7 1.9E-17 6.5E-22 168.9 18.0 138 117-259 32-169 (220)
105 3e6j_A Variable lymphocyte rec 99.7 1.3E-17 4.5E-22 171.4 15.6 157 585-822 21-177 (229)
106 1h6t_A Internalin B; cell adhe 99.7 6.6E-18 2.3E-22 180.4 13.6 122 514-644 26-147 (291)
107 1h6t_A Internalin B; cell adhe 99.7 2.1E-17 7.1E-22 176.6 16.5 189 538-818 26-214 (291)
108 2xot_A Amphoterin-induced prot 99.7 3.3E-18 1.1E-22 189.1 9.7 87 733-819 113-204 (361)
109 2xot_A Amphoterin-induced prot 99.7 4E-18 1.4E-22 188.4 9.8 180 586-845 21-207 (361)
110 1m9s_A Internalin B; cell inva 99.7 2.2E-17 7.6E-22 193.3 14.9 190 514-795 23-212 (605)
111 1dce_A Protein (RAB geranylger 99.7 2E-19 7E-24 209.4 -2.4 77 733-811 487-567 (567)
112 2v70_A SLIT-2, SLIT homolog 2 99.7 3.4E-17 1.2E-21 167.0 13.4 155 490-648 14-170 (220)
113 1w8a_A SLIT protein; signaling 99.7 1.7E-17 5.6E-22 165.5 10.6 113 732-844 54-166 (192)
114 1m9s_A Internalin B; cell inva 99.7 7.2E-17 2.5E-21 189.0 15.8 188 444-647 26-213 (605)
115 1dce_A Protein (RAB geranylger 99.7 1.4E-19 4.8E-24 210.8 -7.7 141 484-645 346-500 (567)
116 4ezg_A Putative uncharacterize 99.7 5.6E-17 1.9E-21 162.6 11.1 155 580-818 41-195 (197)
117 4b8c_D Glucose-repressible alc 99.7 8.9E-18 3.1E-22 201.9 5.9 129 521-653 210-338 (727)
118 1xeu_A Internalin C; cellular 99.7 4.7E-17 1.6E-21 170.9 10.1 171 557-819 17-187 (263)
119 4b8c_D Glucose-repressible alc 99.7 2.4E-17 8.1E-22 198.3 8.0 227 487-822 173-409 (727)
120 1w8a_A SLIT protein; signaling 99.7 1.4E-16 4.6E-21 158.9 8.9 132 586-797 11-143 (192)
121 1xeu_A Internalin C; cellular 99.6 2.6E-16 8.9E-21 165.2 10.3 170 462-646 18-187 (263)
122 4ezg_A Putative uncharacterize 99.6 1.2E-15 4.3E-20 152.7 13.4 150 487-645 44-195 (197)
123 3sb4_A Hypothetical leucine ri 99.6 7.9E-17 2.7E-21 175.7 4.6 288 116-446 24-328 (329)
124 3sb4_A Hypothetical leucine ri 99.6 4.9E-16 1.7E-20 169.4 9.6 290 315-637 24-327 (329)
125 2wfh_A SLIT homolog 2 protein 99.6 8.1E-15 2.8E-19 145.9 13.3 89 733-821 55-143 (193)
126 2ell_A Acidic leucine-rich nuc 99.6 4.3E-15 1.5E-19 144.6 10.6 87 732-818 71-161 (168)
127 2wfh_A SLIT homolog 2 protein 99.6 1.2E-14 4.1E-19 144.6 13.0 112 733-845 32-144 (193)
128 2je0_A Acidic leucine-rich nuc 99.6 8.7E-15 3E-19 139.3 10.8 128 116-250 16-148 (149)
129 2o6r_A Variable lymphocyte rec 99.6 1.8E-14 6.1E-19 141.6 12.6 90 733-822 53-142 (177)
130 2ell_A Acidic leucine-rich nuc 99.5 2E-14 6.7E-19 139.9 11.9 131 513-644 25-160 (168)
131 2je0_A Acidic leucine-rich nuc 99.5 3.1E-14 1.1E-18 135.4 10.9 128 512-640 17-149 (149)
132 1ds9_A Outer arm dynein; leuci 99.5 7.4E-16 2.5E-20 154.5 -0.9 155 579-817 14-185 (198)
133 4fdw_A Leucine rich hypothetic 99.5 4.7E-13 1.6E-17 148.8 19.3 264 340-643 112-382 (401)
134 2o6r_A Variable lymphocyte rec 99.5 1.8E-13 6E-18 134.4 13.6 132 514-648 9-141 (177)
135 4fdw_A Leucine rich hypothetic 99.5 6.8E-13 2.3E-17 147.5 19.9 269 315-619 112-382 (401)
136 4fs7_A Uncharacterized protein 99.5 7.9E-13 2.7E-17 147.8 20.3 334 105-491 59-392 (394)
137 4fs7_A Uncharacterized protein 99.5 7.6E-13 2.6E-17 147.9 18.2 218 410-641 158-376 (394)
138 3g39_A Variable lymphocyte rec 99.4 2.8E-13 9.4E-18 131.8 10.7 91 733-823 31-121 (170)
139 3g39_A Variable lymphocyte rec 99.4 4E-13 1.4E-17 130.6 11.1 109 733-844 10-119 (170)
140 1ds9_A Outer arm dynein; leuci 99.4 6.6E-15 2.3E-19 147.5 -2.2 150 560-793 19-185 (198)
141 1a9n_A U2A', U2A'; complex (nu 99.4 2.9E-13 1E-17 132.6 8.8 84 733-818 65-154 (176)
142 1a9n_A U2A', U2A'; complex (nu 99.4 4E-13 1.4E-17 131.7 9.1 134 111-255 13-153 (176)
143 2r9u_A Variable lymphocyte rec 99.4 8.2E-13 2.8E-17 128.8 10.6 90 733-822 34-123 (174)
144 2r9u_A Variable lymphocyte rec 99.4 1.6E-12 5.4E-17 126.8 10.9 107 735-844 15-122 (174)
145 2ifg_A High affinity nerve gro 99.2 1.1E-11 3.9E-16 136.0 10.1 107 736-844 12-120 (347)
146 3un9_A NLR family member X1; l 99.2 2E-12 6.8E-17 142.3 0.4 143 488-630 102-262 (372)
147 4gt6_A Cell surface protein; l 99.2 7.2E-10 2.5E-14 123.7 20.9 123 514-643 267-390 (394)
148 2ifg_A High affinity nerve gro 99.2 2.2E-11 7.5E-16 133.6 7.7 89 732-821 31-120 (347)
149 4gt6_A Cell surface protein; l 99.2 9.1E-10 3.1E-14 122.9 20.7 113 527-643 256-369 (394)
150 3un9_A NLR family member X1; l 99.1 5.3E-12 1.8E-16 138.9 0.9 111 145-255 72-196 (372)
151 4h09_A Hypothetical leucine ri 99.0 2.2E-08 7.6E-13 111.0 20.6 107 530-639 234-341 (379)
152 4h09_A Hypothetical leucine ri 98.9 8.3E-08 2.8E-12 106.4 21.2 130 110-252 39-168 (379)
153 2ra8_A Uncharacterized protein 98.7 1.4E-08 4.7E-13 110.6 6.9 82 732-815 252-341 (362)
154 3rw6_A Nuclear RNA export fact 98.7 1.7E-09 5.7E-14 111.5 -0.6 82 166-248 167-257 (267)
155 2ra8_A Uncharacterized protein 98.7 1.6E-08 5.4E-13 110.1 6.4 83 558-642 251-341 (362)
156 1io0_A Tropomodulin; LRR prote 98.6 1.7E-08 5.7E-13 99.2 3.5 91 165-255 61-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 4E-07 1.4E-11 93.7 4.6 65 731-797 169-237 (267)
158 1io0_A Tropomodulin; LRR prote 98.2 3.7E-07 1.3E-11 89.5 3.1 87 558-644 64-164 (185)
159 3e4g_A ATP synthase subunit S, 98.0 2.3E-06 7.9E-11 81.4 2.5 34 195-228 115-149 (176)
160 3e4g_A ATP synthase subunit S, 97.8 4E-06 1.4E-10 79.8 1.6 83 170-253 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 2.2E-05 7.4E-10 76.2 3.9 90 165-254 66-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00019 6.6E-09 69.5 4.9 118 113-230 37-169 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.00093 3.2E-08 60.5 5.5 53 736-790 12-65 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0027 9.2E-08 57.4 5.6 58 759-818 11-69 (130)
165 2lz0_A Uncharacterized protein 58.0 13 0.00044 31.1 4.9 50 101-155 4-53 (100)
166 2lz0_A Uncharacterized protein 35.0 39 0.0013 28.1 4.3 44 208-252 10-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-91 Score=856.58 Aligned_cols=716 Identities=31% Similarity=0.458 Sum_probs=575.9
Q ss_pred CCCCChHHHHHHHHHhhhhcccccccccCCCCCCCCCCCCCCCCCCCCCcccceeEecCCCCcEEEEecCCCCCCCCCCC
Q 002350 24 GYKACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYD 103 (933)
Q Consensus 24 ~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~~~C~w~gv~c~~~~~~V~~l~l~~~~~l~l~~~ 103 (933)
+++.+.++||+|||+||+++.++ . .+++| +.+ ++||+|+||+|+ +|||++++|++... .|.
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~------~-~l~~W-~~~------~~~C~w~gv~C~--~~~v~~L~L~~~~l---~g~ 65 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDK------N-LLPDW-SSN------KNPCTFDGVTCR--DDKVTSIDLSSKPL---NVG 65 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCT------T-SSTTC-CTT------SCGGGSTTEEEE--TTEEEEEECTTSCC---CEE
T ss_pred ccccCCHHHHHHHHHHHhhCCCc------c-cccCC-CCC------CCCcCCcceEEC--CCcEEEEECCCCCc---CCc
Confidence 34566899999999999999643 4 89999 644 689999999998 69999999998764 332
Q ss_pred CcccccccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchh--hhcCCCCCCEEecCCCcc
Q 002350 104 WFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFS--YLNTLPSLCTLILHWNRI 181 (933)
Q Consensus 104 ~~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls~n~i 181 (933)
. ..+ ++.|.++++|+.++++.+.+.. .+ ..++++++|++|+|++|.+++.+|. .++++++|++|+|++|.+
T Consensus 66 ~-~~l-~~~l~~L~~L~~l~~~~~~~~~-l~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l 138 (768)
T 3rgz_A 66 F-SAV-SSSLLSLTGLESLFLSNSHING-SV----SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138 (768)
T ss_dssp H-HHH-HHHTTTCTTCCEEECTTSCEEE-CC----CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE
T ss_pred c-Ccc-ChhHhccCcccccCCcCCCcCC-Cc----hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCcc
Confidence 0 012 2467888999999999886532 22 5789999999999999999998888 899999999999999999
Q ss_pred cCccChhhhcCCCCCCEEECCCCCCCCcchhh---cCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCC
Q 002350 182 EGSQTNQGICELKNLFEMNLERNFIGSPLITC---LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 258 (933)
Q Consensus 182 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 258 (933)
.+..+...+.++++|++|+|++|.+++..+.. +.++++|++|++++|.+++..|. .++++|++|++++|.+++.+
T Consensus 139 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~ 216 (768)
T 3rgz_A 139 DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGI 216 (768)
T ss_dssp ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCC
T ss_pred CCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCC
Confidence 98877554589999999999999999888877 88999999999999999877664 78999999999999998766
Q ss_pred ChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHh
Q 002350 259 PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLR 338 (933)
Q Consensus 259 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 338 (933)
|. +++ +++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..
T Consensus 217 ~~--l~~-------------------------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--- 266 (768)
T 3rgz_A 217 PF--LGD-------------------------CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--- 266 (768)
T ss_dssp CB--CTT-------------------------CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---
T ss_pred cc--ccc-------------------------CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---
Confidence 62 444 445556677777777778888888888888888888888777764
Q ss_pred CCCCCCEEEcCCCCCcCcCcCCccc-CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCcccc-ccCCCCC
Q 002350 339 NNPKLEVLLLKNNSFSGILQLPKAK-HDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS-AGEMKEL 416 (933)
Q Consensus 339 ~l~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L 416 (933)
.+++|++|++++|.+++..+..+.. +++|++|++++|++++.+|..+. .+++|++|++++|.+.+.+|.. +..+++|
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGL 345 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCC
Confidence 6788888888888887554444443 48888888888888877787775 4888888888888888777765 7888888
Q ss_pred CEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcc--cCcCCeEEccCccccccccccccCCCCCCEEEc
Q 002350 417 SLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMN--LTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 494 (933)
Q Consensus 417 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 494 (933)
++|++++|++.+.+|..+....++|++|++++|.+.+.++..+.. +++|++|++++|.+++.+|..+..+++|++|++
T Consensus 346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425 (768)
T ss_dssp CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence 888888888887777766432338888888888888877777766 778888888888888888888888888888888
Q ss_pred cCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcc
Q 002350 495 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNG 573 (933)
Q Consensus 495 s~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~ 573 (933)
++|++++.+|..+..++. |+.|++++|++++.+|..+..+++|++|++++|++++.+|..+ .+++|++|++++|++++
T Consensus 426 s~N~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 426 SFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504 (768)
T ss_dssp CSSEEESCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred cCCcccCcccHHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC
Confidence 888888888888888876 8888888888888888888888888888888888888888777 78888888888888888
Q ss_pred cCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccC---------Cc--
Q 002350 574 LIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR---------NK-- 642 (933)
Q Consensus 574 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~---------N~-- 642 (933)
.+|..+..+++|++|++++|++++.+|..++.+++|++|++++|+++|.+|..+.....+..+++.. +.
T Consensus 505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (768)
T 3rgz_A 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence 8888888888888899988888888888888888888999998888888888887766655444333 11
Q ss_pred -----------CCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchh
Q 002350 643 -----------FSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDE 711 (933)
Q Consensus 643 -----------l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 711 (933)
+.|..|..+..+...... .+....
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------------~l~~~~--------------- 619 (768)
T 3rgz_A 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPC------------------------------NITSRV--------------- 619 (768)
T ss_dssp TTCCSSEEEEECTTCCGGGGGGGGGTCCS------------------------------CTTSCE---------------
T ss_pred ccccccccccccccccchhhhcccccccc------------------------------ccccce---------------
Confidence 222233222222110000 000000
Q ss_pred hhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCe
Q 002350 712 RVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNK 791 (933)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~ 791 (933)
..+.. ......++.|+.|||++|+++|.+|.+++++++|+.|+|++|+++|.+|..|+++++|++||||+|+
T Consensus 620 -------~~g~~-~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 620 -------YGGHT-SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp -------EEEEC-CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred -------ecccC-chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 00000 0011346789999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCcCCcCCCCCCeEEccCCcCcccCCCCCcCCccCcccccCCCCCCCccccCCCCCCC
Q 002350 792 LTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTL 853 (933)
Q Consensus 792 l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gN~~lc~~~l~~~~~~~~ 853 (933)
++|.||..+..+++|++||+++|+++|.||.+++|.+|+..+|.|||++||.|+. .|....
T Consensus 692 l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp CEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred ccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 9999999999999999999999999999999999999999999999999999876 786544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.8e-72 Score=686.56 Aligned_cols=652 Identities=29% Similarity=0.388 Sum_probs=549.8
Q ss_pred CCCEeeCCCCCCccc---cCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccCh-hhhcCC
Q 002350 118 ELQSLDLSVNIFTYD---SKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTN-QGICEL 193 (933)
Q Consensus 118 ~L~~LdLs~n~~~~~---~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~-~~l~~l 193 (933)
+++.|||+++.+.|. ++ .++.++++|+.++++.+.+. .+|..++++++|++|||++|.+.+.+|. ..++++
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~----~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 125 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVS----SSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHH----HHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGC
T ss_pred cEEEEECCCCCcCCccCccC----hhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCC
Confidence 578889998888876 55 67888888888888888764 3456788888888888888888876662 168888
Q ss_pred CCCCEEECCCCCCCCcchhhc-CCCCCCCEEEccCCcCCCCCchh---ccCCCCCCEEECCCCcCCCCCChhhhhcCCCC
Q 002350 194 KNLFEMNLERNFIGSPLITCL-KNLTRLKILDISSNQLNGSLPSV---ISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL 269 (933)
Q Consensus 194 ~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 269 (933)
++|++|+|++|.+.+.+|..+ .++++|++|++++|++++..|.. +.++++|++|++++|.+++..+
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------- 195 (768)
T 3rgz_A 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---------- 195 (768)
T ss_dssp TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----------
T ss_pred CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC----------
Confidence 888888888888887777665 78888888888888888777766 7788888888888888776544
Q ss_pred ceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcC
Q 002350 270 EGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLK 349 (933)
Q Consensus 270 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~ 349 (933)
+..+++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|..+. .+++|++|+++
T Consensus 196 ------------------~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls 255 (768)
T 3rgz_A 196 ------------------VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNIS 255 (768)
T ss_dssp ------------------CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTT-TCSSCCEEECC
T ss_pred ------------------cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHh-cCCCCCEEECC
Confidence 23456777888888999888887 99999999999999999988888774 89999999999
Q ss_pred CCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCC
Q 002350 350 NNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGG 429 (933)
Q Consensus 350 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 429 (933)
+|.+++. .+...+++|++|++++|++++.+|..++..+++|++|++++|.+++.+|..++.+++|++|++++|.+.|.
T Consensus 256 ~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 256 SNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333 (768)
T ss_dssp SSCCEES--CCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred CCcccCc--cCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc
Confidence 9999876 44448999999999999999999999877679999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCCCEEECcCCcCCCcCchhhcccC-cCCeEEccCccccccccccccC--CCCCCEEEccCCcCCCCChhh
Q 002350 430 LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLT-RLRHLYFENNNFSGKIKDGLLS--STSLQVLDISNNMLSGHIPHW 506 (933)
Q Consensus 430 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~Ls~n~l~~~~p~~ 506 (933)
+|...+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+++.+|..+.. +++|++|++++|++++.+|..
T Consensus 334 ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 413 (768)
T 3rgz_A 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413 (768)
T ss_dssp CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG
T ss_pred CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH
Confidence 9988788999999999999999999999999987 9999999999999999988877 889999999999999999999
Q ss_pred HhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCc
Q 002350 507 MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKL 585 (933)
Q Consensus 507 l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 585 (933)
+..++. |+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+ .+++|++|++++|++++.+|..+..+++|
T Consensus 414 l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 414 LSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp GGGCTT-CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HhcCCC-CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 999887 9999999999999999999999999999999999999999888 89999999999999999999999999999
Q ss_pred cEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCcc
Q 002350 586 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVL 665 (933)
Q Consensus 586 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~ 665 (933)
++|++++|++++.+|.+++.+++|++|+|++|+++|.+|..++++++|+.|++++|+++|.+|..+.....+......
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~-- 570 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI-- 570 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTT--
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999988775433211000
Q ss_pred CCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCC
Q 002350 666 NGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT 745 (933)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 745 (933)
... .+....+.......... .. .+....... .....+..+..++++.|.++
T Consensus 571 ~~~-----------~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~---------------~~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 571 AGK-----------RYVYIKNDGMKKECHGA-GN--LLEFQGIRS---------------EQLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp CSC-----------EEEEEECCSCCTTCCSS-EE--EEECTTCCG---------------GGGGGGGGTCCSCTTSCEEE
T ss_pred ccc-----------ccccccccccccccccc-cc--ccccccccc---------------hhhhccccccccccccceec
Confidence 000 00000000000000000 00 000000000 00012345566889999999
Q ss_pred CCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCC-C
Q 002350 746 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-G 824 (933)
Q Consensus 746 g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~ 824 (933)
|.+|..++.+++|+.|||++|+++|.+|..|+++++|+.|||++|+++|.||..+++++.|++|||++|+++|.+|.. .
T Consensus 622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp EECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999976 5
Q ss_pred cCCccCcccccCCC
Q 002350 825 QFATFDESSYRGNP 838 (933)
Q Consensus 825 ~~~~~~~~~~~gN~ 838 (933)
.+..+....+.+|+
T Consensus 702 ~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 702 ALTMLTEIDLSNNN 715 (768)
T ss_dssp GCCCCSEEECCSSE
T ss_pred CCCCCCEEECcCCc
Confidence 56666777777775
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.2e-59 Score=564.66 Aligned_cols=591 Identities=21% Similarity=0.215 Sum_probs=451.5
Q ss_pred CCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCC
Q 002350 117 EELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNL 196 (933)
Q Consensus 117 ~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L 196 (933)
+++++|||++|.+.+..+ ..|.++++|++|+|++|.+++..|..++++++|++|+|++|.+++..+ ..++.+++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPA----ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD-KTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSSCCCCCCG----GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred CCCcEEECCCCCCCCcCH----HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh-hhhccCCCC
Confidence 689999999998887554 678889999999999999998888899999999999999999886544 568899999
Q ss_pred CEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEeccc
Q 002350 197 FEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLST 276 (933)
Q Consensus 197 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~ 276 (933)
++|++++|.+.+..|..|+++++|++|++++|.+++..|..++++++|++|++++|.+++..+ ..+.
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~------------ 166 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS-EELD------------ 166 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH-HHHG------------
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH-HHhh------------
Confidence 999999999988777889999999999999999998888888899999999999998875433 2221
Q ss_pred ccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHh--CCCCCCEEEcCCCCCc
Q 002350 277 RNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLR--NNPKLEVLLLKNNSFS 354 (933)
Q Consensus 277 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--~l~~L~~L~L~~n~l~ 354 (933)
...+++|++|++++|.+++..|..+..+++|+.|+++++.+.+.....+.. ..++|+.|++++|.++
T Consensus 167 -----------~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~ 235 (680)
T 1ziw_A 167 -----------IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235 (680)
T ss_dssp -----------GGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred -----------ccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc
Confidence 113356777888888888888888888899999999988876443332211 3467777777777777
Q ss_pred CcCcCCcccCCC--ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcch
Q 002350 355 GILQLPKAKHDF--LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ 432 (933)
Q Consensus 355 ~~~~~~~~~~~~--L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 432 (933)
+..+..+..++. |++|++++|++++..|..+. .+++|++|++++|.+.+..|..+..+++|+.|++++|...+.++.
T Consensus 236 ~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 314 (680)
T 1ziw_A 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314 (680)
T ss_dssp EECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----
T ss_pred ccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc
Confidence 665555554433 66666666666644444443 366666666666666666666666666666666666544322211
Q ss_pred hhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCC-hh-hHhhh
Q 002350 433 SVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHI-PH-WMGNF 510 (933)
Q Consensus 433 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~-~l~~~ 510 (933)
. .+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.... +. .+..+
T Consensus 315 ~----------------~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~ 378 (680)
T 1ziw_A 315 A----------------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378 (680)
T ss_dssp ------------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG
T ss_pred c----------------cccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccc
Confidence 0 011111124566777788888888777777777777888888888877654221 11 12211
Q ss_pred c-cccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccC-ccc-cCCCCceEEeecCcCcccCchhhccCCCccE
Q 002350 511 S-SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIA-SSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVT 587 (933)
Q Consensus 511 ~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 587 (933)
. .+|+.|++++|++++..|..+..+++|+.|++++|++.+.++ ..+ ++++|++|++++|++.+..+..|..+++|+.
T Consensus 379 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~ 458 (680)
T 1ziw_A 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458 (680)
T ss_dssp TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCE
T ss_pred ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccccc
Confidence 1 249999999999998888999999999999999999987666 445 8999999999999999888999999999999
Q ss_pred EeCcCCcCc--ccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCcc
Q 002350 588 LNLRDNTFS--GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVL 665 (933)
Q Consensus 588 L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~ 665 (933)
|++++|.+. +.+|..+..+++|++|++++|++++..+..|.++++|+.|++++|++++..+..+....
T Consensus 459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~---------- 528 (680)
T 1ziw_A 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP---------- 528 (680)
T ss_dssp EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC----------
T ss_pred chhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc----------
Confidence 999999987 57899999999999999999999988888899999999999999998753222111000
Q ss_pred CCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCC
Q 002350 666 NGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT 745 (933)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 745 (933)
......+++|+.|||++|+++
T Consensus 529 -----------------------------------------------------------~~~~~~l~~L~~L~L~~N~l~ 549 (680)
T 1ziw_A 529 -----------------------------------------------------------IYFLKGLSHLHILNLESNGFD 549 (680)
T ss_dssp -----------------------------------------------------------CCTTTTCTTCCEEECCSSCCC
T ss_pred -----------------------------------------------------------chhhcCCCCCCEEECCCCCCC
Confidence 000023567889999999999
Q ss_pred CCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCc-CCCCCCeEEccCCcCcccCCC
Q 002350 746 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLT-ALNFLSIFNVSYNNLSGRTPD 822 (933)
Q Consensus 746 g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~~p~ 822 (933)
...+..|+.+++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+.+++++|++.|.++.
T Consensus 550 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 44445689999999999999999988888889999999999999999988887777 788999999999999988874
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-58 Score=560.83 Aligned_cols=588 Identities=20% Similarity=0.187 Sum_probs=443.6
Q ss_pred EeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEE
Q 002350 121 SLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMN 200 (933)
Q Consensus 121 ~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~ 200 (933)
.+|.+++.++. +| ..+. +++++|+|++|.+++..+..|+++++|++|++++|.+++..+ ..+.++++|++|+
T Consensus 8 ~~~cs~~~L~~-ip----~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ 79 (680)
T 1ziw_A 8 VADCSHLKLTQ-VP----DDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLN 79 (680)
T ss_dssp EEECCSSCCSS-CC----SCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEE
T ss_pred eeECCCCCccc-cc----cccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEE
Confidence 45566655542 33 2232 678888888888888777788888888888888888887666 5678888888888
Q ss_pred CCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEecccccCc
Q 002350 201 LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNT 280 (933)
Q Consensus 201 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~ 280 (933)
|++|.+++..+.+|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..+
T Consensus 80 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------------------- 138 (680)
T 1ziw_A 80 LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL--------------------- 138 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC---------------------
T ss_pred CCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc---------------------
Confidence 88888877655678888888888888888877666778888888888888887764322
Q ss_pred cccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHH-hCCCCCCEEEcCCCCCcCcCcC
Q 002350 281 LHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL-RNNPKLEVLLLKNNSFSGILQL 359 (933)
Q Consensus 281 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~~l~~L~~L~L~~n~l~~~~~~ 359 (933)
..+.++++|++|++++|.+++..+..+. ..+++|++|++++|.+++..+.
T Consensus 139 -----------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 139 -----------------------------GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189 (680)
T ss_dssp -----------------------------CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred -----------------------------hhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence 2333444555555555555433333221 1334555555555555555444
Q ss_pred CcccCCCccEEEccCCcCCCCCChhhhh--cCCCccEEEccCCCCCCCccccccCCCC--CCEEEcCCCcCCCCcchhhh
Q 002350 360 PKAKHDFLHHLDISCNNFRGKLPHNMGV--ILQKLMYMDISKNCFEGNIPYSAGEMKE--LSLLDLSRNYFSGGLSQSVV 435 (933)
Q Consensus 360 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~Ls~n~l~~~~~~~~~ 435 (933)
.+..+++|+.|+++++.+.+.....+.. ..++|++|++++|.+.+..|..+..++. |++|++++|.+.+ ++...+
T Consensus 190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~-~~~~~~ 268 (680)
T 1ziw_A 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSF 268 (680)
T ss_dssp GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE-ECTTTT
T ss_pred hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc-cCcccc
Confidence 4555556666666665543221111110 1367777777777777666666666544 7777777777763 333445
Q ss_pred cCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccc-----ccc----ccccCCCCCCEEEccCCcCCCCChhh
Q 002350 436 TGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSG-----KIK----DGLLSSTSLQVLDISNNMLSGHIPHW 506 (933)
Q Consensus 436 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~l~~l~~L~~L~Ls~n~l~~~~p~~ 506 (933)
..+++|++|++++|.+.+..+..+..+++|+.|++++|...+ .+| ..+..+++|++|++++|.+.+..+..
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 348 (680)
T 1ziw_A 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348 (680)
T ss_dssp TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT
T ss_pred cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH
Confidence 677778888888887777777777778888888887765442 122 26788999999999999999888888
Q ss_pred HhhhccccceeecCCCcCCCC--cchhccC--CCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCc-hhhc
Q 002350 507 MGNFSSELEILSMSKNHLEGN--VPVQLNN--LERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIP-GELF 580 (933)
Q Consensus 507 l~~~~~~L~~L~L~~n~l~~~--~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p-~~~~ 580 (933)
+..++. |++|++++|.+... ....|.. .++|+.|++++|++++..+..+ .+++|++|++++|.+.+.+| ..+.
T Consensus 349 ~~~l~~-L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 427 (680)
T 1ziw_A 349 FTGLIN-LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427 (680)
T ss_dssp TTTCTT-CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT
T ss_pred hccccC-CcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc
Confidence 888877 99999999986532 2223333 3689999999999999888888 89999999999999987666 6889
Q ss_pred cCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCC--CCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccc
Q 002350 581 RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ--GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 658 (933)
Q Consensus 581 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~ 658 (933)
.+++|++|++++|++++..+..+..+++|+.|++++|.++ +.+|..+.++++|+.|++++|++++..|..+.+
T Consensus 428 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~----- 502 (680)
T 1ziw_A 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG----- 502 (680)
T ss_dssp TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT-----
T ss_pred CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc-----
Confidence 9999999999999999888999999999999999999987 568999999999999999999999766655543
Q ss_pred cCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEE
Q 002350 659 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLD 738 (933)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 738 (933)
+++|+.||
T Consensus 503 ------------------------------------------------------------------------l~~L~~L~ 510 (680)
T 1ziw_A 503 ------------------------------------------------------------------------LEKLEILD 510 (680)
T ss_dssp ------------------------------------------------------------------------CTTCCEEE
T ss_pred ------------------------------------------------------------------------ccccCEEe
Confidence 34678899
Q ss_pred cCCCcCCCCC--------ChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEE
Q 002350 739 LSCNQLTGEI--------PSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFN 810 (933)
Q Consensus 739 Ls~N~l~g~i--------p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 810 (933)
|++|++++.. +..++.+++|++|+|++|+++...+..|+++++|+.|||++|++++..|..|..+++|+.|+
T Consensus 511 Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 590 (680)
T 1ziw_A 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590 (680)
T ss_dssp CCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEE
Confidence 9999998642 23478999999999999999966666899999999999999999987777889999999999
Q ss_pred ccCCcCcccCCCC-C-cCCccCcccccCCCCCCCccc
Q 002350 811 VSYNNLSGRTPDK-G-QFATFDESSYRGNPSLCAWLI 845 (933)
Q Consensus 811 ls~N~l~g~~p~~-~-~~~~~~~~~~~gN~~lc~~~l 845 (933)
+++|++++..|.. . .+.++....+.||||.|+|..
T Consensus 591 L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999999987753 2 466778888999999999874
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-54 Score=534.65 Aligned_cols=525 Identities=20% Similarity=0.218 Sum_probs=306.6
Q ss_pred CCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcc-hhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEE
Q 002350 169 PSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPL-ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYL 247 (933)
Q Consensus 169 ~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 247 (933)
++|++|||++|.+++..+ ..+.++++|++|+|++|...+.+ |.+|+++++|++|+|++|.+.+..|..|+++++|++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 344444444444443333 33444444444444444333333 4445555555555555555554445555555555555
Q ss_pred ECCCCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCC-chhhhCCCCCCEEEccCC
Q 002350 248 DLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSY-PDFLLHQYHLKYLDLSHN 326 (933)
Q Consensus 248 ~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n 326 (933)
++++|.+++.++.. ..+..+++|++|++++|.+++.. +..++++++|++|++++|
T Consensus 103 ~Ls~n~l~~~~~~~------------------------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 103 RLYFCGLSDAVLKD------------------------GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp ECTTCCCSSCCSTT------------------------CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred eCcCCCCCcccccC------------------------ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 55555544322210 01222333334444444444433 356888999999999999
Q ss_pred CCcccchhHHHhCC--CCCCEEEcCCCCCcCcCcCCcccCCC------ccEEEccCCcCCCCCChhhhhcC--CCccEEE
Q 002350 327 KLVGNFPTWLLRNN--PKLEVLLLKNNSFSGILQLPKAKHDF------LHHLDISCNNFRGKLPHNMGVIL--QKLMYMD 396 (933)
Q Consensus 327 ~l~~~~p~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~------L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~ 396 (933)
.+++..|..+. .+ ++|+.|++++|.+.+..+..+..+++ |++|++++|.+++.++..+...+ .+++.+.
T Consensus 159 ~i~~~~~~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 159 QIFLVCEHELE-PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp CCCCCCSGGGH-HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred cCCeeCHHHcc-cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 99877776654 44 78888888888888765444444443 77777777777766666654322 3455666
Q ss_pred ccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCC--CCCCEEECcCCcCCCcCchhhcccCcCCeEEccCcc
Q 002350 397 ISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGC--FSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNN 474 (933)
Q Consensus 397 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 474 (933)
++.+..... ...+.+.+ .....+.++ ++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 238 l~~~~~~~~---------------~~~~~l~~-~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 301 (844)
T 3j0a_A 238 LAHHIMGAG---------------FGFHNIKD-PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301 (844)
T ss_dssp CCSSCCBCS---------------SSCSSSTT-GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC
T ss_pred ccccccccc---------------ccccccCC-CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc
Confidence 553322110 11222221 122222232 567777777777776666667777777777777777
Q ss_pred ccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCc
Q 002350 475 FSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIAS 554 (933)
Q Consensus 475 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 554 (933)
+++..+..+..+++|++|++++|.+++..|..+..++. |+.|++++|++.+..+..|..+++|+.|++++|.+++..
T Consensus 302 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-- 378 (844)
T 3j0a_A 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK-VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-- 378 (844)
T ss_dssp CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT-CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS--
T ss_pred CCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC-CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc--
Confidence 77666667777777777777777776665666666665 777777777776666666777777777777777765432
Q ss_pred cccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCccc-CchhhhcCCCccEEEcCCCcCCCCCch-hhhcCCC
Q 002350 555 SLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR-IPHQINEHSNLRFLLLGGNHLQGPIPD-QLCQLQK 632 (933)
Q Consensus 555 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~ 632 (933)
.+++|+.|++++|+++. +|.. ..+++.|++++|++++. .+..+..+++|++|+|++|++++..+. .+..+++
T Consensus 379 --~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 452 (844)
T 3j0a_A 379 --FIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS 452 (844)
T ss_dssp --SCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTT
T ss_pred --CCCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCc
Confidence 25667777777777763 3332 34667777777777643 223345667777777777777654332 3445666
Q ss_pred CCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhh
Q 002350 633 LAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDER 712 (933)
Q Consensus 633 L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 712 (933)
|+.|++++|.+++..+..+..-
T Consensus 453 L~~L~Ls~N~l~~~~~~~~~~~---------------------------------------------------------- 474 (844)
T 3j0a_A 453 LEQLFLGENMLQLAWETELCWD---------------------------------------------------------- 474 (844)
T ss_dssp CCBCEEESCCCSSSCCSCCCSS----------------------------------------------------------
T ss_pred cccccCCCCccccccccccchh----------------------------------------------------------
Confidence 7777777776653222110000
Q ss_pred hHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCee
Q 002350 713 VEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKL 792 (933)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 792 (933)
....+++|+.|||++|++++.+|..++.+++|+.|+|++|++++.+|..+. ++|+.|||++|++
T Consensus 475 --------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 475 --------------VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQL 538 (844)
T ss_dssp --------------CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECC
T ss_pred --------------hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcC
Confidence 001234566667777777666666666666777777777777665555554 6667777777777
Q ss_pred cccCCcCCcCCCCCCeEEccCCcCcccCC
Q 002350 793 TGQIPPQLTALNFLSIFNVSYNNLSGRTP 821 (933)
Q Consensus 793 ~~~ip~~l~~l~~L~~L~ls~N~l~g~~p 821 (933)
++.+|..+. .|+.+++++|++.|.++
T Consensus 539 ~~~~~~~~~---~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 539 LAPNPDVFV---SLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred CCCChhHhC---CcCEEEecCCCcccccc
Confidence 766665543 56666777776666665
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-53 Score=508.33 Aligned_cols=538 Identities=21% Similarity=0.184 Sum_probs=386.7
Q ss_pred CEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEE
Q 002350 120 QSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEM 199 (933)
Q Consensus 120 ~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L 199 (933)
+++|.++..++ .+| ..+. +++++|++++|.+++..|..|+++++|++|+|++|++.+..+ ..+.++++|++|
T Consensus 15 ~~~~c~~~~l~-~iP----~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L 86 (606)
T 3t6q_A 15 KTYNCENLGLN-EIP----GTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTL 86 (606)
T ss_dssp TEEECTTSCCS-SCC----TTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEE
T ss_pred ceEECCCCCcc-cCc----CCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeCh-hhccCccccCee
Confidence 46677666554 233 2222 357777777777777667777777777777777777766555 556777777777
Q ss_pred ECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEecccccC
Q 002350 200 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 279 (933)
Q Consensus 200 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~ 279 (933)
+|++|.+.+..|..|+++++|++|++++|.+++..|..++++++|++|++++|.+++.
T Consensus 87 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~---------------------- 144 (606)
T 3t6q_A 87 VLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI---------------------- 144 (606)
T ss_dssp ECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC----------------------
T ss_pred eCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCccccc----------------------
Confidence 7777777766666777777777777777777765566667777777777777766532
Q ss_pred ccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCC--EEEcCCCCCcCcC
Q 002350 280 TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLE--VLLLKNNSFSGIL 357 (933)
Q Consensus 280 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~--~L~L~~n~l~~~~ 357 (933)
.+..+..+++|++|++++|.+++..|..+ ..+++|+ .|++++|.+++..
T Consensus 145 ----------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~l~L~l~~n~l~~~~ 195 (606)
T 3t6q_A 145 ----------------------------KLPKGFPTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNGNDIAGIE 195 (606)
T ss_dssp ----------------------------CCCTTCCCTTCCEEECCSSCCCEECHHHH-HTTTTCCSEEEECTTCCCCEEC
T ss_pred ----------------------------CcccccCCcccCEEEcccCcccccChhhh-hhhcccceeEEecCCCccCccC
Confidence 11112225556666666666553333333 3555555 5555555555543
Q ss_pred cCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcC
Q 002350 358 QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 437 (933)
Q Consensus 358 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 437 (933)
+..+ ....|++|++++|. .++..+ ..+.+++...+....+. .+... .++...+.+
T Consensus 196 ~~~~-~~~~L~~L~l~~~~---~~~~~~-~~l~~~~l~~l~~~~~~-----------~~~~~---------~i~~~~~~~ 250 (606)
T 3t6q_A 196 PGAF-DSAVFQSLNFGGTQ---NLLVIF-KGLKNSTIQSLWLGTFE-----------DMDDE---------DISPAVFEG 250 (606)
T ss_dssp TTTT-TTCEEEEEECTTCS---CHHHHH-HHTTTCEEEEEECCCCT-----------TSCCC---------CCCGGGGGG
T ss_pred hhHh-hhccccccccCCch---hHHHHh-hhccccchhheechhhc-----------ccccc---------ccChhHhch
Confidence 3222 23456666666664 223222 22444443333322221 11111 112222222
Q ss_pred CC--CCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccc
Q 002350 438 CF--SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELE 515 (933)
Q Consensus 438 l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~ 515 (933)
+. +|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..|..+..++. |+
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~ 328 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LT 328 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT-CS
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCc-CC
Confidence 22 6778888888888777777888888888888888887 67777888888888888888888666777777776 88
Q ss_pred eeecCCCcCCCCcch-hccCCCCCCEEEccCCcCcccc--Cccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCc
Q 002350 516 ILSMSKNHLEGNVPV-QLNNLERLRILDISENRLSGPI--ASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 591 (933)
Q Consensus 516 ~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~--~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 591 (933)
.|++++|.+.+.+|. .+..+++|++|++++|++.+.. +..+ .+++|++|++++|++.+..|..+..+++|++|+++
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence 888888888765554 4888899999999999988765 5555 78899999999999988888899999999999999
Q ss_pred CCcCcccCch-hhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCC---chhhhhhccccCCCCccCC
Q 002350 592 DNTFSGRIPH-QINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP---PCFANVLSWRVGSDDVLNG 667 (933)
Q Consensus 592 ~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p---~~~~~l~~l~~~~~~~~~~ 667 (933)
+|++++..|. .+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+ ..+.
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--------------- 473 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ--------------- 473 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG---------------
T ss_pred CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc---------------
Confidence 9999877654 48889999999999999998889999999999999999999875211 1111
Q ss_pred CCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCC
Q 002350 668 SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE 747 (933)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ 747 (933)
.+++|+.||+++|++++.
T Consensus 474 --------------------------------------------------------------~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 474 --------------------------------------------------------------TLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp --------------------------------------------------------------GCTTCCEEECTTSCCCEE
T ss_pred --------------------------------------------------------------cCCCccEEECCCCccCcc
Confidence 245788899999999988
Q ss_pred CChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCC
Q 002350 748 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 821 (933)
Q Consensus 748 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p 821 (933)
+|..++.+++|+.|+|++|++++.+|..|.++++| .|||++|++++.+|..+..+++|+.+++++|+++|.++
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 89999999999999999999999999999999999 99999999998888888999999999999999988776
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.4e-52 Score=499.31 Aligned_cols=517 Identities=18% Similarity=0.168 Sum_probs=444.7
Q ss_pred CCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCC
Q 002350 117 EELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNL 196 (933)
Q Consensus 117 ~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L 196 (933)
+++++|||++|.+++..+ .+|+++++|++|+|++|.+++..|..|+++++|++|+|++|++++..+ ..++.+++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQN----TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTCCCSEECT----TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTC
T ss_pred CcCcEEEccCCccCcCCh----hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-hhhcccccc
Confidence 368999999999987666 789999999999999999998889999999999999999999987766 679999999
Q ss_pred CEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCc--eEec
Q 002350 197 FEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE--GLLL 274 (933)
Q Consensus 197 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~--~L~L 274 (933)
++|++++|.+++..+..++++++|++|++++|.+.+..+..+..+++|++|++++|.+++. +...++++++|+ .|++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL-SKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE-CHHHHHTTTTCCSEEEEC
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc-ChhhhhhhcccceeEEec
Confidence 9999999999997788899999999999999999975545555699999999999999854 446788999998 7888
Q ss_pred ccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcc----cchhHHHhCCC--CCCEEEc
Q 002350 275 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG----NFPTWLLRNNP--KLEVLLL 348 (933)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~~l~--~L~~L~L 348 (933)
++|......+. . .....|+.|++++|. ..+..+..+.+++...+....+.+ .++...+..+. +|+.|++
T Consensus 187 ~~n~l~~~~~~-~-~~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 187 NGNDIAGIEPG-A-FDSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp TTCCCCEECTT-T-TTTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred CCCccCccChh-H-hhhccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 87765443322 2 334689999999886 345566666665544443332221 23333333333 7999999
Q ss_pred CCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCC
Q 002350 349 KNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSG 428 (933)
Q Consensus 349 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 428 (933)
++|.++++.+..+..+++|++|++++|+++ .+|..+. .+++|++|++++|.+.+..|..+..+++|++|++++|.+.+
T Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 339 (606)
T 3t6q_A 262 QKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339 (606)
T ss_dssp TTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred ecCccCccCHHHhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence 999999997777899999999999999998 8888775 48999999999999998888899999999999999999998
Q ss_pred CcchhhhcCCCCCCEEECcCCcCCCcC--chhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhh
Q 002350 429 GLSQSVVTGCFSLELLDLSNNNFEGQF--FSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW 506 (933)
Q Consensus 429 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 506 (933)
.++...+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..|..
T Consensus 340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 888888889999999999999999876 778899999999999999999888999999999999999999998776654
Q ss_pred -HhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccc---cCccc-cCCCCceEEeecCcCcccCchhhcc
Q 002350 507 -MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP---IASSL-NLSSVEHLSLQKNALNGLIPGELFR 581 (933)
Q Consensus 507 -l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~ 581 (933)
+..++. |+.|++++|.+++..|..+..+++|++|++++|++.+. .+..+ .+++|++|++++|++++..|..+..
T Consensus 420 ~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 498 (606)
T 3t6q_A 420 PFQNLHL-LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498 (606)
T ss_dssp TTTTCTT-CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTT
T ss_pred hhhCccc-CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcc
Confidence 666766 99999999999999999999999999999999999873 22344 8999999999999999999999999
Q ss_pred CCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCC
Q 002350 582 SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 648 (933)
Q Consensus 582 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 648 (933)
+++|++|++++|++++..|..+..+++| +|++++|++++..|..+..+++|+.|++++|++++..+
T Consensus 499 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999999999999999999999999 99999999999999999999999999999999997655
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-52 Score=513.27 Aligned_cols=528 Identities=20% Similarity=0.246 Sum_probs=381.4
Q ss_pred EEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCC-chhccCCCCCCEEECCC
Q 002350 173 TLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSL-PSVISNLTSLEYLDLSH 251 (933)
Q Consensus 173 ~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~ 251 (933)
..|.+++.++.... -.++|++|+|++|.+++..+..|+++++|++|+|++|...+.+ |..|.++++|++|+|++
T Consensus 8 ~~dcs~~~L~~vP~-----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEESCCCSSCCCS-----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEEccCCCCCCCCC-----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 55666666664321 3466777777777777666667777777777777777544443 56667777777777777
Q ss_pred CcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchh--hhCCCCCCEEEccCCCCc
Q 002350 252 NNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDF--LLHQYHLKYLDLSHNKLV 329 (933)
Q Consensus 252 n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~ 329 (933)
|.+++..| . .+..+++|++|++++|.+++.+|.. +.++++|++|+|++|.++
T Consensus 83 N~l~~~~p-~-------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~ 136 (844)
T 3j0a_A 83 SKIYFLHP-D-------------------------AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136 (844)
T ss_dssp CCCCEECT-T-------------------------SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC
T ss_pred CcCcccCH-h-------------------------HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccc
Confidence 66654322 1 2233334444455555555444332 555555555555555555
Q ss_pred ccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcC--CCccEEEccCCCCCCCcc
Q 002350 330 GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVIL--QKLMYMDISKNCFEGNIP 407 (933)
Q Consensus 330 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~Ls~n~l~~~~p 407 (933)
+..+... +..+++|++|++++|.+++..+..+.. + ++|+.|+++.|.+.+..|
T Consensus 137 ~~~~~~~------------------------~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 137 SLYLHPS------------------------FGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp CCCCCGG------------------------GGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSBSCCCCC
T ss_pred ccccchh------------------------HhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCccccccc
Confidence 4333222 334444555555555554444444432 2 455555555555555555
Q ss_pred ccccCCCC------CCEEEcCCCcCCCCcchhhhcC--CCCCCEEECcC---------CcCCCcCchhhccc--CcCCeE
Q 002350 408 YSAGEMKE------LSLLDLSRNYFSGGLSQSVVTG--CFSLELLDLSN---------NNFEGQFFSEYMNL--TRLRHL 468 (933)
Q Consensus 408 ~~l~~l~~------L~~L~Ls~n~l~~~~~~~~~~~--l~~L~~L~Ls~---------n~l~~~~~~~~~~l--~~L~~L 468 (933)
..++.+++ |+.|++++|.+.+.++..+... ..+++.+.++. +.+.+.....|..+ ++|+.|
T Consensus 192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L 271 (844)
T 3j0a_A 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271 (844)
T ss_dssp CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEE
Confidence 44444433 6666666666655555444322 23556666553 33333334445443 789999
Q ss_pred EccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcC
Q 002350 469 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL 548 (933)
Q Consensus 469 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 548 (933)
++++|.+.+..+..+..+++|++|++++|++++..|..+..++. |++|++++|++++..|..|..+++|+.|++++|++
T Consensus 272 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 350 (844)
T 3j0a_A 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN-LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350 (844)
T ss_dssp ECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSS-CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCC
T ss_pred ECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCC-CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCC
Confidence 99999999888999999999999999999999887888888877 99999999999988899999999999999999999
Q ss_pred ccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCC-chh
Q 002350 549 SGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPI-PDQ 626 (933)
Q Consensus 549 ~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~ 626 (933)
.+..+..+ .+++|++|++++|.+++. ..+++|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..
T Consensus 351 ~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~ 421 (844)
T 3j0a_A 351 AIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYF 421 (844)
T ss_dssp CCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHH
T ss_pred CccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhh
Confidence 88888777 899999999999999854 23789999999999998 55654 468999999999999753 344
Q ss_pred hhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhh
Q 002350 627 LCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKR 706 (933)
Q Consensus 627 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 706 (933)
+.++++|+.|++++|++++..+....
T Consensus 422 ~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------------------------------------ 447 (844)
T 3j0a_A 422 LLRVPHLQILILNQNRFSSCSGDQTP------------------------------------------------------ 447 (844)
T ss_dssp HTTCTTCCEEEEESCCCCCCCSSSSS------------------------------------------------------
T ss_pred hhcCCccceeeCCCCccccccccccc------------------------------------------------------
Confidence 67899999999999999865432110
Q ss_pred hhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCC-----CCCChhhhhccccCeeeccccccccccchhccCCCC
Q 002350 707 AAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT-----GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKM 781 (933)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-----g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 781 (933)
..+++|+.|+|++|.++ +..|..+..+++|+.|+|++|++++.+|..|.++++
T Consensus 448 ----------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 505 (844)
T 3j0a_A 448 ----------------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505 (844)
T ss_dssp ----------------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred ----------------------ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence 11346888999999997 455677899999999999999999999999999999
Q ss_pred CCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCCCcCCccCcccccCCCCCCCcccc
Q 002350 782 IESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQ 846 (933)
Q Consensus 782 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gN~~lc~~~l~ 846 (933)
|+.|||++|++++..|..+. ++|+.||+++|++++.+|.. |..+....+.|||+.|+|++.
T Consensus 506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccccH
Confidence 99999999999988777776 89999999999999999854 667778889999999988753
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-52 Score=500.29 Aligned_cols=536 Identities=20% Similarity=0.175 Sum_probs=358.4
Q ss_pred CEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEE
Q 002350 120 QSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEM 199 (933)
Q Consensus 120 ~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L 199 (933)
++++.+++.++. +| ..+. ++|++|+|++|.+++..+..|+++++|++|++++|.+++..+ ..+.++++|++|
T Consensus 14 ~~~~c~~~~l~~-ip----~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L 85 (606)
T 3vq2_A 14 ITYQCMDQKLSK-VP----DDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNL 85 (606)
T ss_dssp TEEECTTSCCSS-CC----TTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEE
T ss_pred CceEccCCCccc-CC----CCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEe
Confidence 456666665542 22 1121 556666666666665555566666666666666666554444 345555555555
Q ss_pred ECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEecccccC
Q 002350 200 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 279 (933)
Q Consensus 200 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~ 279 (933)
+|++|.+++..|.+|+++++|++|++++|.+++..+..++++++|++|++++|.+++
T Consensus 86 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------------------- 142 (606)
T 3vq2_A 86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS----------------------- 142 (606)
T ss_dssp ECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCC-----------------------
T ss_pred ECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccc-----------------------
Confidence 555555555555555555555555555555554444455555555555555554432
Q ss_pred ccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCC----CCEEEcCCCCCcC
Q 002350 280 TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPK----LEVLLLKNNSFSG 355 (933)
Q Consensus 280 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~----L~~L~L~~n~l~~ 355 (933)
..+|..++++++|++|++++|++++..|..+. .+++ +++|++++|.+++
T Consensus 143 --------------------------~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~~l~~L~l~~n~l~~ 195 (606)
T 3vq2_A 143 --------------------------CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ-FLRENPQVNLSLDMSLNPIDF 195 (606)
T ss_dssp --------------------------CCCCGGGGTCTTCCEEECCSSCCCEECTTTTH-HHHHCTTCCCEEECTTCCCCE
T ss_pred --------------------------eechHhHhhcCCCCEEEccCCcceecChhhhh-hhhccccccceeeccCCCcce
Confidence 13577888899999999999998865554332 3333 4477777777776
Q ss_pred cCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhh
Q 002350 356 ILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVV 435 (933)
Q Consensus 356 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 435 (933)
+.+..+... +|++|++++|.+.+.........++.|+.+++..+.+.+.. .+. .++...+
T Consensus 196 ~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~-----------~~~~~~~ 255 (606)
T 3vq2_A 196 IQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLE-----------IFEPSIM 255 (606)
T ss_dssp ECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCS-----------CCCGGGG
T ss_pred eCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC--------ccc-----------ccChHHh
Confidence 654444333 67777777776653333333344666666666544333210 000 1111112
Q ss_pred cCCC--CCCEEEC-cCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhcc
Q 002350 436 TGCF--SLELLDL-SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS 512 (933)
Q Consensus 436 ~~l~--~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~ 512 (933)
.++. .++.+++ ..|.+.+..+. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+|.. .++.
T Consensus 256 ~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~~--~l~~ 329 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPTL--DLPF 329 (606)
T ss_dssp TTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCCC--CCSS
T ss_pred hhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccccC--CCCc
Confidence 2222 3556666 56667766666 777888888888888876 445 677778888888888888 577743 5555
Q ss_pred ccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCcccc--Cccc-cCCCCceEEeecCcCcccCchhhccCCCccEEe
Q 002350 513 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI--ASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN 589 (933)
Q Consensus 513 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 589 (933)
|+.|++++|+..+.. .+..+++|+.|++++|++++.. +..+ .+++|++|++++|.+.+ +|..+..+++|++|+
T Consensus 330 -L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 330 -LKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLD 405 (606)
T ss_dssp -CCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEE
T ss_pred -cceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeE
Confidence 888888888655433 5667888888888888887653 4444 77888888888888775 457777888888888
Q ss_pred CcCCcCcccCc-hhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCC-CCchhhhhhccccCCCCccCC
Q 002350 590 LRDNTFSGRIP-HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS-IPPCFANVLSWRVGSDDVLNG 667 (933)
Q Consensus 590 Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~-~p~~~~~l~~l~~~~~~~~~~ 667 (933)
+++|++.+..| ..+..+++|++|++++|++++..|..+.++++|+.|++++|++++. +|..++.
T Consensus 406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-------------- 471 (606)
T 3vq2_A 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-------------- 471 (606)
T ss_dssp CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--------------
T ss_pred CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc--------------
Confidence 88888887766 6778888888888888888887888888888888888888888763 4444332
Q ss_pred CCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCC
Q 002350 668 SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE 747 (933)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ 747 (933)
+++|+.|||++|++++.
T Consensus 472 ---------------------------------------------------------------l~~L~~L~Ls~n~l~~~ 488 (606)
T 3vq2_A 472 ---------------------------------------------------------------TTNLTFLDLSKCQLEQI 488 (606)
T ss_dssp ---------------------------------------------------------------CTTCCEEECTTSCCCEE
T ss_pred ---------------------------------------------------------------CCCCCEEECCCCcCCcc
Confidence 34677788888888888
Q ss_pred CChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCC-CCCeEEccCCcCcccCC
Q 002350 748 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN-FLSIFNVSYNNLSGRTP 821 (933)
Q Consensus 748 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~~p 821 (933)
+|..++.+++|++|+|++|++++.+|..|+++++|++|||++|+++ .+|..+..++ +|+++++++|++.|.+|
T Consensus 489 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 8888888888888888888888888888888888888888888888 6677777776 58888888888887776
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-50 Score=482.78 Aligned_cols=512 Identities=20% Similarity=0.161 Sum_probs=436.3
Q ss_pred CCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCC
Q 002350 117 EELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNL 196 (933)
Q Consensus 117 ~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L 196 (933)
++|++|||++|.+.+..+ ..|.++++|++|++++|.+++..|..|+++++|++|+|++|.+++..| ..++++++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS----YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSL 106 (606)
T ss_dssp TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTC
T ss_pred CCcCEEECCCCCcCEeCh----hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh-hhcCCcccC
Confidence 789999999999987665 689999999999999999998889999999999999999999998777 679999999
Q ss_pred CEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCC-CCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCC----ce
Q 002350 197 FEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL----EG 271 (933)
Q Consensus 197 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L----~~ 271 (933)
++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+ ..++.+++| .+
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV-NDLQFLRENPQVNLS 185 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT-TTTHHHHHCTTCCCE
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh-hhhhhhhccccccce
Confidence 999999999998877889999999999999999986 569999999999999999999986544 445555554 47
Q ss_pred EecccccCccccccCCCCCCCcceEEEccCCCCC-CCCchhhhCCCCCCEEEccCCCCccc-----chhHHHhCCC--CC
Q 002350 272 LLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLN-GSYPDFLLHQYHLKYLDLSHNKLVGN-----FPTWLLRNNP--KL 343 (933)
Q Consensus 272 L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~-----~p~~~~~~l~--~L 343 (933)
+++++|... .++...+... +|++|++++|.+. +..|..+..++.|+.+++..+.+.+. ++...+..+. .+
T Consensus 186 L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 186 LDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp EECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred eeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 999887754 3444444444 8999999999887 45778889999999988865544321 2222222222 46
Q ss_pred CEEEc-CCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcC
Q 002350 344 EVLLL-KNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLS 422 (933)
Q Consensus 344 ~~L~L-~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 422 (933)
+.+++ ..+.+.+..+. +..+++|++|++++|.+. .+| .+. .+++|++|++++|.+ +.+| .+ .+++|+.|+++
T Consensus 264 ~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~-~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~ 336 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVP-KHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLT 336 (606)
T ss_dssp EEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCC-TTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEE
T ss_pred hheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hcc-ccccCCEEEcccccC-cccc-cC-CCCccceeecc
Confidence 66777 66777776544 788999999999999997 677 443 488999999999999 5788 45 99999999999
Q ss_pred CCcCCCCcchhhhcCCCCCCEEECcCCcCCCc--CchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCC
Q 002350 423 RNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ--FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS 500 (933)
Q Consensus 423 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 500 (933)
+|...+.+ .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.
T Consensus 337 ~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~ 412 (606)
T 3vq2_A 337 MNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLK 412 (606)
T ss_dssp SCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEE
T ss_pred CCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccC
Confidence 99765444 346889999999999999876 37888999999999999999985 6688999999999999999999
Q ss_pred CCCh-hhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCcc-ccCccc-cCCCCceEEeecCcCcccCch
Q 002350 501 GHIP-HWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSL-NLSSVEHLSLQKNALNGLIPG 577 (933)
Q Consensus 501 ~~~p-~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~-~l~~L~~L~L~~n~l~~~~p~ 577 (933)
+..| ..+..++. |+.|++++|.+++..|..+.++++|++|++++|++.+ .+|..+ .+++|++|++++|++++..|.
T Consensus 413 ~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 491 (606)
T 3vq2_A 413 RVTEFSAFLSLEK-LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491 (606)
T ss_dssp STTTTTTTTTCTT-CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred CccChhhhhcccc-CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh
Confidence 7777 56777776 9999999999999999999999999999999999998 467777 899999999999999999999
Q ss_pred hhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCC-CCCEEEccCCcCCCCCCc
Q 002350 578 ELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ-KLAMMDLSRNKFSGSIPP 649 (933)
Q Consensus 578 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~~p~ 649 (933)
.+..+++|++|++++|++++..|..+..+++|++|++++|+++ .+|..+..++ +|+.|++++|++.+..+.
T Consensus 492 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999999999999999999999999999999999999999 6787799997 699999999999976653
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-50 Score=481.98 Aligned_cols=521 Identities=17% Similarity=0.225 Sum_probs=288.9
Q ss_pred CChHHHHHHHHHhhhhccccccc--ccCCCCCCCCCCCCCCCCCCCCCccc---ceeEecCCCCcEEEEecCCCCCCCCC
Q 002350 27 ACLETERTALLQIKSFFISASDI--EYKDSILSSWVDDDDDDGMPSDCCHW---QRVKCNATTGRVMQLSLKNTTRLNYP 101 (933)
Q Consensus 27 ~~~~~~~~~ll~~k~~~~~~~~~--~~~~~~l~~W~~~~~~~~~~~~~C~w---~gv~c~~~~~~V~~l~l~~~~~l~l~ 101 (933)
+....|++||.+||+++..+.-. +++.....+| +.+ ++||.| .||+|+.. |||++|+|++.+. +
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W-~~~------~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l---~ 94 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANW-NFN------KELDMWGAQPGVSLNSN-GRVTGLSLEGFGA---S 94 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCC-CCS------SCGGGTTCCTTEEECTT-CCEEEEECTTSCC---E
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCC-CCC------CCcccccCCCCeEEcCC-CCEEEEEecCccc---C
Confidence 34568999999999998654111 1122356689 544 789999 99999864 9999999987764 3
Q ss_pred CCCcccccccccCCCCCCCEeeCCCCCCccccCcc--------ccccCCCCCCCCEEeCCCCcCCCcchhhhcC-CCCCC
Q 002350 102 YDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVA--------AYDSLRSLKQLKILVLGHNYFDDSIFSYLNT-LPSLC 172 (933)
Q Consensus 102 ~~~~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~--------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~ 172 (933)
|.. +..|.++++|++|||++|.+....... .+... ++.|| ++++++.+.+.++..+.. +..+.
T Consensus 95 g~l-----p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~ 166 (636)
T 4eco_A 95 GRV-----PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCI 166 (636)
T ss_dssp EEE-----CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHH
T ss_pred CcC-----ChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHh
Confidence 221 245667777777777776541110000 00000 23333 444444444444433321 11111
Q ss_pred EEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCC
Q 002350 173 TLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN 252 (933)
Q Consensus 173 ~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 252 (933)
.+++....+.. .....++.+.+. ...|++++ +|..++++++|++|++++|
T Consensus 167 ~~~l~~~~~~~-------~~~~~l~~l~l~----------------------~~~n~l~~-ip~~l~~l~~L~~L~Ls~n 216 (636)
T 4eco_A 167 NSDPQQKSIKK-------SSRITLKDTQIG----------------------QLSNNITF-VSKAVMRLTKLRQFYMGNS 216 (636)
T ss_dssp HHCTTSCCCCC-------CCCCCCCTTTTT----------------------CCSCEEEE-ECGGGGGCTTCCEEEEESC
T ss_pred hcCcccccccc-------ccccchhhhhhc----------------------cccCCCcc-CCHHHhcccCCCEEECcCC
Confidence 11111111110 001111111111 11344444 4445555555555555555
Q ss_pred cCCCC-CChhhhhcCCCCceEecccccCccccccCCCC--CCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCC-C
Q 002350 253 NFEGM-FPLSSLANHSKLEGLLLSTRNNTLHVKTENWL--PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNK-L 328 (933)
Q Consensus 253 ~l~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l 328 (933)
.+++. ++..+... . . ..........+. .+++|++|++++|++.+.+|..++++++|++|++++|+ +
T Consensus 217 ~l~~~~~~~~~~~~--~-------~-~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 217 PFVAENICEAWENE--N-------S-EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp CCCGGGBSSSCSCT--T-------S-HHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred cccccccccccccc--c-------c-chhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence 55442 00000000 0 0 000000001122 34445555555666666677778888888889999888 8
Q ss_pred cc-cchhHHHhCC------CCCCEEEcCCCCCcCcCcC--CcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccC
Q 002350 329 VG-NFPTWLLRNN------PKLEVLLLKNNSFSGILQL--PKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISK 399 (933)
Q Consensus 329 ~~-~~p~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~ 399 (933)
+| .+|..+. .+ ++|++|++++|.++.++ . .+..+++|++|++++|+++|.+|
T Consensus 287 ~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l~~ip-~~~~l~~l~~L~~L~L~~N~l~g~ip----------------- 347 (636)
T 4eco_A 287 SGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLKTFP-VETSLQKMKKLGMLECLYNQLEGKLP----------------- 347 (636)
T ss_dssp CHHHHHHHHH-HHHHSGGGGTCCEEECCSSCCSSCC-CHHHHTTCTTCCEEECCSCCCEEECC-----------------
T ss_pred ccccchHHHH-hhhccccCCCCCEEECCCCcCCccC-chhhhccCCCCCEEeCcCCcCccchh-----------------
Confidence 87 7887765 33 55555555555555321 1 23344445555555555444444
Q ss_pred CCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCC-CCEEECcCCcCCCcCchhhcccC--cCCeEEccCcccc
Q 002350 400 NCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFS-LELLDLSNNNFEGQFFSEYMNLT--RLRHLYFENNNFS 476 (933)
Q Consensus 400 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~ 476 (933)
.++.+++|++|++++|++. .+|.. +..+++ |++|++++|.++ .+|..+..++ +|++|++++|.++
T Consensus 348 ---------~~~~l~~L~~L~L~~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 348 ---------AFGSEIKLASLNLAYNQIT-EIPAN-FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp ---------CCEEEEEESEEECCSSEEE-ECCTT-SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred ---------hhCCCCCCCEEECCCCccc-cccHh-hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCC
Confidence 4444444455555554444 34433 233444 555555555544 3344333322 5555556666555
Q ss_pred cccccccc-------CCCCCCEEEccCCcCCCCChhhHhh-hccccceeecCCCcCCCCcchh-cc-------CCCCCCE
Q 002350 477 GKIKDGLL-------SSTSLQVLDISNNMLSGHIPHWMGN-FSSELEILSMSKNHLEGNVPVQ-LN-------NLERLRI 540 (933)
Q Consensus 477 ~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~p~~l~~-~~~~L~~L~L~~n~l~~~~~~~-~~-------~l~~L~~ 540 (933)
+..|..+. .+++|++|++++|+++ .+|..+.. ++. |+.|++++|+++ .+|.. +. ++++|+.
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~-L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~ 492 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSP-LSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTS 492 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCC-CSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCE
T ss_pred CcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCC-CCEEECCCCCCC-CcCHHHhccccccccccCCccE
Confidence 55555554 5556666666666666 45544443 333 666666666666 33332 22 2237777
Q ss_pred EEccCCcCccccCccc--cCCCCceEEeecCcCcccCchhhccCCCccEEeC------cCCcCcccCchhhhcCCCccEE
Q 002350 541 LDISENRLSGPIASSL--NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNL------RDNTFSGRIPHQINEHSNLRFL 612 (933)
Q Consensus 541 L~Ls~n~l~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L 612 (933)
|++++|+++....... .+++|++|+|++|++++ +|..+..+++|++|++ ++|++.+.+|..+..+++|++|
T Consensus 493 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp EECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred EECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 7777777774333333 67777888888887776 6777778888888888 5688888999999999999999
Q ss_pred EcCCCcCCCCCchhhhcCCCCCEEEccCCcCC
Q 002350 613 LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 644 (933)
Q Consensus 613 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 644 (933)
+|++|++ +.+|..+. ++|+.||+++|++.
T Consensus 572 ~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 572 QIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp ECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred ECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 9999999 57888766 89999999999887
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-48 Score=471.88 Aligned_cols=461 Identities=21% Similarity=0.234 Sum_probs=280.3
Q ss_pred CCChHHHHHHHHHhhhhcccccccccCCCCCCCCCCCCCCCCCCCCC--ccc------------ceeEecCCCCcEEEEe
Q 002350 26 KACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDC--CHW------------QRVKCNATTGRVMQLS 91 (933)
Q Consensus 26 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~~~--C~w------------~gv~c~~~~~~V~~l~ 91 (933)
+++..+|++||++||+++.++ +| +.+++ +...+| |.| .||+|+. .|||++|+
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----------~W-~~~~~-~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~ 329 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----------NW-RYYSG-TINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLS 329 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----------GC-CCCCS-SCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEE
T ss_pred cccchHHHHHHHHHHHHcCCC-----------CC-CcCCC-cccccCCccccccccccccccCcCceEecC-CCCEEEEE
Confidence 456788999999999998431 78 43310 111344 999 9999986 69999999
Q ss_pred cCCCCCCCCCCCCcccccccccCCCCCCCEeeC-CCCCCccccCccccc-------------------------------
Q 002350 92 LKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDL-SVNIFTYDSKVAAYD------------------------------- 139 (933)
Q Consensus 92 l~~~~~l~l~~~~~~~~~~~~f~~l~~L~~LdL-s~n~~~~~~~~~~~~------------------------------- 139 (933)
|++.++ .|.. ++.|.++++|++||| ++|.+.|..+.....
T Consensus 330 Ls~~~L---~G~i-----p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 330 LAGFGA---KGRV-----PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp CTTTCC---EEEE-----CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CccCCC---CCcC-----chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 988765 3332 367899999999999 888877663321100
Q ss_pred --------------cC--CCCCCCCEEeCCC--CcCCCcchhhhcCCCCCCEEecCCCcccCc-----------------
Q 002350 140 --------------SL--RSLKQLKILVLGH--NYFDDSIFSYLNTLPSLCTLILHWNRIEGS----------------- 184 (933)
Q Consensus 140 --------------~l--~~l~~L~~L~Ls~--n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~----------------- 184 (933)
.+ .....++.+.+.. |.+++ +|..++++++|++|+|++|.+++.
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 01 1222333444443 66776 788888888888888888888872
Q ss_pred cChhhhc--CCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCc-CCC-CCchhccCCC-------CCCEEECCCCc
Q 002350 185 QTNQGIC--ELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQ-LNG-SLPSVISNLT-------SLEYLDLSHNN 253 (933)
Q Consensus 185 ~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~-------~L~~L~L~~n~ 253 (933)
+| ..++ ++++|++|+|++|.+.+.+|..|+++++|++|+|++|+ +++ .+|..+++++ +|++|++++|.
T Consensus 481 iP-~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 EN-EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TT-SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CC-hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 44 4555 88888888888888888888888888888888888887 777 6777666554 88888888888
Q ss_pred CCCCCCh-hhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCC-CCEEEccCCCCccc
Q 002350 254 FEGMFPL-SSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYH-LKYLDLSHNKLVGN 331 (933)
Q Consensus 254 l~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~ 331 (933)
++ .+|. ..++++++|+.|++++|... .++ .+..+++|+.|++++|+++ .+|..+..+++ |+.|++++|.++ .
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence 87 6663 36777777777777766654 333 5556666666666666666 55666666666 666666666665 5
Q ss_pred chhHHHhCC--CCCCEEEcCCCCCcCcCcC-C--cc--cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCC
Q 002350 332 FPTWLLRNN--PKLEVLLLKNNSFSGILQL-P--KA--KHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG 404 (933)
Q Consensus 332 ~p~~~~~~l--~~L~~L~L~~n~l~~~~~~-~--~~--~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~ 404 (933)
+|..+. .. ++|+.|++++|.+.+..+. + .. ..++|++|++++|+++ .+|..++..+++|++|++++|.+.
T Consensus 634 lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~- 710 (876)
T 4ecn_A 634 IPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT- 710 (876)
T ss_dssp CCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-
T ss_pred Cchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-
Confidence 554332 22 2255666666655543210 0 11 2234555555555555 455554444555555555555554
Q ss_pred CccccccCCCCCCEEEcCCCcCCCCcchhhhcC-------CCCCCEEECcCCcCCCcCchhhc--ccCcCCeEEccCccc
Q 002350 405 NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG-------CFSLELLDLSNNNFEGQFFSEYM--NLTRLRHLYFENNNF 475 (933)
Q Consensus 405 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~-------l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l 475 (933)
.+|...+.. +++|++|+|++|+++ .+|..+. .+++|+.|+|++|++
T Consensus 711 ------------------------~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L 765 (876)
T 4ecn_A 711 ------------------------SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF 765 (876)
T ss_dssp ------------------------CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCC
T ss_pred ------------------------ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCC
Confidence 333333222 125555555555555 3444443 555666666666666
Q ss_pred cccccccccCCCCCCEEEccC------CcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCc
Q 002350 476 SGKIKDGLLSSTSLQVLDISN------NMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS 549 (933)
Q Consensus 476 ~~~~~~~l~~l~~L~~L~Ls~------n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 549 (933)
++ +|..+..+++|+.|++++ |++.+.+|..+..++. |+.|+|++|++ +.+|..+. ++|+.|++++|++.
T Consensus 766 ~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~-L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 766 SS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS-LIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp SS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS-CCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred Cc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC-CCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence 54 455555666666666655 3344444444444433 44444444444 23333332 34444444444443
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-47 Score=451.64 Aligned_cols=495 Identities=18% Similarity=0.195 Sum_probs=325.6
Q ss_pred CCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECC
Q 002350 171 LCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLS 250 (933)
Q Consensus 171 L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 250 (933)
+++|++++|.+++..+ ..+..+++|++|+|++|.+++..+.+|+++++|++|++++|.+++..|..|+++++|++|+++
T Consensus 30 l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp CCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 4444444444433322 234444444444444444444444445555555555555555554444455555555555555
Q ss_pred CCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCC-CCchhhhCCCCCCEEEccCCCCc
Q 002350 251 HNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLV 329 (933)
Q Consensus 251 ~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~ 329 (933)
+|.+++..+ . .+..+++|++|++++|.+++ .+|..+.++++|++|++++|+++
T Consensus 109 ~n~l~~l~~-~-------------------------~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 109 ETNLASLEN-F-------------------------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TSCCCCSTT-C-------------------------SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred ccccccCCC-c-------------------------cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 554432111 0 01112222222222232322 23555556666666666666665
Q ss_pred ccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCc----cEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCC-
Q 002350 330 GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFL----HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG- 404 (933)
Q Consensus 330 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L----~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~- 404 (933)
+..|. .+..+++| +++++++|.+++..|..+ . ..+|++|++++|....
T Consensus 163 ~~~~~-------------------------~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~-~-~~~L~~L~l~~n~~~~~ 215 (570)
T 2z63_A 163 SIYCT-------------------------DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-K-EIRLHKLTLRNNFDSLN 215 (570)
T ss_dssp EECGG-------------------------GGHHHHTCTTCCCEEECTTCCCCEECTTTT-T-TCEEEEEEEESCCSCTT
T ss_pred eecHH-------------------------HccchhccchhhhhcccCCCCceecCHHHh-c-cCcceeEeccccccccc
Confidence 33332 22233344 678888888875444433 3 3378888888774332
Q ss_pred CccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccC--cCCeEEccCc-cccccccc
Q 002350 405 NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLT--RLRHLYFENN-NFSGKIKD 481 (933)
Q Consensus 405 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n-~l~~~~~~ 481 (933)
.++..+..++.++.+.+....+.. ...++. +. ...+..++ .++.++++++ .+.+..+.
T Consensus 216 ~~~~~~~~l~~l~~~~l~~~~~~~---------~~~l~~--~~--------~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 276 (570)
T 2z63_A 216 VMKTCIQGLAGLEVHRLVLGEFRN---------EGNLEK--FD--------KSALEGLCNLTIEEFRLAYLDYYLDDIID 276 (570)
T ss_dssp HHHHHHHTTTTCEEEEEEEEECCC---------CSSCEE--CC--------TTTTGGGGGSEEEEEEEEETTEEESCSTT
T ss_pred chhhhhcCccccceeeeccccccC---------chhhhh--cc--------hhhhccccccchhhhhhhcchhhhhhchh
Confidence 344556666666666554332221 011110 11 11112222 2456666666 56666667
Q ss_pred cccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCC
Q 002350 482 GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSV 561 (933)
Q Consensus 482 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L 561 (933)
.+..+++|++|++++|.+. .+|..+... . |+.|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|
T Consensus 277 ~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~-L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L 349 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSVTIE-RVKDFSYNF-G-WQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSL 349 (570)
T ss_dssp TTGGGTTCSEEEEESCEEC-SCCBCCSCC-C-CSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTC
T ss_pred hhcCcCcccEEEecCccch-hhhhhhccC-C-ccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCC
Confidence 7777777777777777776 566666665 4 777777777777 4443 4667888888888887766554 567888
Q ss_pred ceEEeecCcCcccC--chhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCc-hhhhcCCCCCEEEc
Q 002350 562 EHLSLQKNALNGLI--PGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP-DQLCQLQKLAMMDL 638 (933)
Q Consensus 562 ~~L~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L 638 (933)
++|++++|.+++.. |..+..+++|++|++++|++++..+. +..+++|++|++++|++.+..| ..+..+++|+.|++
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred CEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 88888888887654 67888899999999999999865444 8889999999999999987766 57889999999999
Q ss_pred cCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhh
Q 002350 639 SRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA 718 (933)
Q Consensus 639 s~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 718 (933)
++|.+++..|..+..
T Consensus 429 ~~n~l~~~~~~~~~~----------------------------------------------------------------- 443 (570)
T 2z63_A 429 SHTHTRVAFNGIFNG----------------------------------------------------------------- 443 (570)
T ss_dssp TTSCCEECCTTTTTT-----------------------------------------------------------------
T ss_pred cCCcccccchhhhhc-----------------------------------------------------------------
Confidence 999998777765543
Q ss_pred hccceeeecCCCCCcccEEEcCCCcCC-CCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCC
Q 002350 719 MKNRYEIYNGSNVNRVTGLDLSCNQLT-GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP 797 (933)
Q Consensus 719 ~~~~~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip 797 (933)
+++|+.|++++|.++ +.+|..++.+++|++|+|++|++++..|..|+++++|++|++++|++++..|
T Consensus 444 ------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 444 ------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp ------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence 346788999999998 6799999999999999999999999989999999999999999999999888
Q ss_pred cCCcCCCCCCeEEccCCcCcccCCCC
Q 002350 798 PQLTALNFLSIFNVSYNNLSGRTPDK 823 (933)
Q Consensus 798 ~~l~~l~~L~~L~ls~N~l~g~~p~~ 823 (933)
..+..+++|+.|++++|+++|.+|..
T Consensus 512 ~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 512 GIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred HHhhcccCCcEEEecCCcccCCCcch
Confidence 88999999999999999999999864
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-46 Score=440.55 Aligned_cols=494 Identities=22% Similarity=0.218 Sum_probs=387.9
Q ss_pred CCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCC
Q 002350 117 EELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNL 196 (933)
Q Consensus 117 ~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L 196 (933)
+++++|||++|.+++..+ .+|.++++|++|+|++|.+++..+..|+++++|++|+|++|.+++..+ ..+..+++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSL 102 (570)
T ss_dssp SSCCEEECCSCCCCEECT----TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTC
T ss_pred ccccEEEccCCccCccCh----hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH-hhhcCcccc
Confidence 579999999999887655 678999999999999999998888889999999999999999987665 678999999
Q ss_pred CEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCC-CCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEecc
Q 002350 197 FEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 275 (933)
Q Consensus 197 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 275 (933)
++|++++|.+++..+..++++++|++|++++|.+.+ .+|..|+++++|++|++++|.+++..+ ..++++++|+.+
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~~--- 178 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLL--- 178 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG-GGGHHHHTCTTC---
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH-HHccchhccchh---
Confidence 999999999988666679999999999999999987 468999999999999999999875433 556666665110
Q ss_pred cccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCC--
Q 002350 276 TRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSF-- 353 (933)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l-- 353 (933)
.+.|++++|.+++..|..+... +|+.|++++|.............++.++.+.+....+
T Consensus 179 ------------------~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 179 ------------------NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp ------------------CCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred ------------------hhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 0234455555554444444433 5666666655433222222223555555444432211
Q ss_pred ----cCcCcCCcccCC--CccEEEccCC-cCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcC
Q 002350 354 ----SGILQLPKAKHD--FLHHLDISCN-NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYF 426 (933)
Q Consensus 354 ----~~~~~~~~~~~~--~L~~L~Ls~n-~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 426 (933)
..+....+..+. .++.++++++ .+.+.+|..+. .+++|++|++++|.+. .+|..+..+ +|+.|++++|.+
T Consensus 240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~ 316 (570)
T 2z63_A 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKF 316 (570)
T ss_dssp CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG-GGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBC
T ss_pred chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc-CcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcc
Confidence 111111222222 3567777777 56666666654 4889999999999887 577778888 899999999988
Q ss_pred CCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccc--cccccCCCCCCEEEccCCcCCCCCh
Q 002350 427 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKI--KDGLLSSTSLQVLDISNNMLSGHIP 504 (933)
Q Consensus 427 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~p 504 (933)
. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+ ++
T Consensus 317 ~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~ 389 (570)
T 2z63_A 317 G-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MS 389 (570)
T ss_dssp S-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EE
T ss_pred c-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-cc
Confidence 7 6665 4678899999999988776655 67889999999999888554 6678888999999999998874 44
Q ss_pred hhHhhhccccceeecCCCcCCCCcc-hhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCc-ccCchhhcc
Q 002350 505 HWMGNFSSELEILSMSKNHLEGNVP-VQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALN-GLIPGELFR 581 (933)
Q Consensus 505 ~~l~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~-~~~p~~~~~ 581 (933)
..+..++. |+.|++++|.+.+..+ ..+..+++|+.|++++|++.+..+..+ ++++|++|++++|.+. +.+|..+..
T Consensus 390 ~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 390 SNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp EEEETCTT-CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred ccccccCC-CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 44667766 9999999999987655 568899999999999999998888887 8999999999999997 578899999
Q ss_pred CCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCc
Q 002350 582 SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 649 (933)
Q Consensus 582 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~ 649 (933)
+++|++|++++|++++..|.++..+++|++|++++|++++..|..+.++++|+.|++++|++++..|.
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999999998899999999999999999999998888899999999999999999998875
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.4e-45 Score=432.11 Aligned_cols=486 Identities=17% Similarity=0.164 Sum_probs=373.9
Q ss_pred CCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCC
Q 002350 118 ELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLF 197 (933)
Q Consensus 118 ~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~ 197 (933)
...+.|.+++.++. +| ..+ .++|++|++++|.+++..|..+.++++|++|++++|++++..+ ..+..+++|+
T Consensus 6 ~~~~c~~~~~~l~~-ip----~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~ 77 (549)
T 2z81_A 6 ASGVCDGRSRSFTS-IP----SGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLE 77 (549)
T ss_dssp TTSEEECTTSCCSS-CC----SCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCC
T ss_pred CCceEECCCCcccc-cc----ccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCC
Confidence 33446666666653 33 222 2577777777777776666777777777777777777766554 4566777777
Q ss_pred EEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCC-CCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEeccc
Q 002350 198 EMNLERNFIGSPLITCLKNLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLST 276 (933)
Q Consensus 198 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~ 276 (933)
+|+|++|.+++..+..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+|
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~----------------- 140 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR----------------- 140 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-----------------
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC-----------------
Confidence 77777777776666667777777777777777665 245566666777777776666433333
Q ss_pred ccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCc
Q 002350 277 RNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI 356 (933)
Q Consensus 277 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 356 (933)
...+..+++|++|++++|++++..|..+..+++|++|++++|.+. .+|.+++..+++|++|++++|.+++.
T Consensus 141 --------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 141 --------RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp --------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred --------HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccc
Confidence 334566778888899999999889999999999999999999986 78888777899999999999999886
Q ss_pred CcCC---cccCCCccEEEccCCcCCCCCChhhh---hcCCCccEEEccCCCCCCCc------cccccCCCCCCEEEcCCC
Q 002350 357 LQLP---KAKHDFLHHLDISCNNFRGKLPHNMG---VILQKLMYMDISKNCFEGNI------PYSAGEMKELSLLDLSRN 424 (933)
Q Consensus 357 ~~~~---~~~~~~L~~L~Ls~n~l~~~~p~~~~---~~l~~L~~L~Ls~n~l~~~~------p~~l~~l~~L~~L~Ls~n 424 (933)
...+ ...+++|+.|++++|.+++..+..+. ..+++|+.+++++|.+.+.. ...+..+++|+.|++.++
T Consensus 212 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 291 (549)
T 2z81_A 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291 (549)
T ss_dssp CCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESC
T ss_pred cccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccccc
Confidence 3222 24678999999999998765554442 34789999999999876531 123567889999999998
Q ss_pred cCCCCcc----hhhhcCCCCCCEEECcCCcCCCcCchhh-cccCcCCeEEccCcccccccc---ccccCCCCCCEEEccC
Q 002350 425 YFSGGLS----QSVVTGCFSLELLDLSNNNFEGQFFSEY-MNLTRLRHLYFENNNFSGKIK---DGLLSSTSLQVLDISN 496 (933)
Q Consensus 425 ~l~~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~Ls~ 496 (933)
.+..... ..++....+|++|++++|.+.. +|..+ ..+++|++|++++|++++.+| ..+..+++|++|++++
T Consensus 292 ~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~ 370 (549)
T 2z81_A 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370 (549)
T ss_dssp BCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTT
T ss_pred ccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccC
Confidence 7753110 1123345789999999999874 55554 689999999999999998764 3477899999999999
Q ss_pred CcCCCCCh--hhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCccc
Q 002350 497 NMLSGHIP--HWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 574 (933)
Q Consensus 497 n~l~~~~p--~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~ 574 (933)
|++++..+ ..+..++. |++|++++|+++ .+|..+..+++|++|++++|++++..... .++|++|++++|++++.
T Consensus 371 N~l~~~~~~~~~~~~l~~-L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~ 446 (549)
T 2z81_A 371 NHLRSMQKTGEILLTLKN-LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSF 446 (549)
T ss_dssp SCCCCHHHHHHHGGGCTT-CCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCC
T ss_pred CcccccccchhhhhcCCC-CCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchh--cCCceEEECCCCChhhh
Confidence 99984322 34667766 999999999999 68888999999999999999987543322 36899999999999875
Q ss_pred CchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCC
Q 002350 575 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 648 (933)
Q Consensus 575 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 648 (933)
+ ..+++|++|++++|+++ .+|. ...+++|++|+|++|++++.+|..+..+++|+.|++++|++++..|
T Consensus 447 ~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 447 S----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp C----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred c----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 3 57899999999999998 6776 4679999999999999999999999999999999999999998877
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.9e-45 Score=432.65 Aligned_cols=488 Identities=21% Similarity=0.227 Sum_probs=320.3
Q ss_pred CcccceeEecCCCCcEEEEecCCCCCCCCCCCCcccccccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEe
Q 002350 72 CCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILV 151 (933)
Q Consensus 72 ~C~w~gv~c~~~~~~V~~l~l~~~~~l~l~~~~~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~ 151 (933)
.|.|.|+ |+.... .+..++... .++|++|||++|.+++..+ ..+.++++|++|+
T Consensus 3 ~C~~~~~-c~~~~~------------------~l~~ip~~~---~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~ 56 (549)
T 2z81_A 3 SCDASGV-CDGRSR------------------SFTSIPSGL---TAAMKSLDLSFNKITYIGH----GDLRACANLQVLI 56 (549)
T ss_dssp EECTTSE-EECTTS------------------CCSSCCSCC---CTTCCEEECCSSCCCEECS----STTSSCTTCCEEE
T ss_pred cCCCCce-EECCCC------------------ccccccccC---CCCccEEECcCCccCccCh----hhhhcCCcccEEE
Confidence 5999999 975322 222333322 2789999999999887666 6789999999999
Q ss_pred CCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCC-cchhhcCCCCCCCEEEccCCcC
Q 002350 152 LGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGS-PLITCLKNLTRLKILDISSNQL 230 (933)
Q Consensus 152 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l 230 (933)
+++|.+++..|..|+++++|++|++++|++++..+ ..++++++|++|++++|.+++ ..|..++++++|++|++++|.+
T Consensus 57 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~ 135 (549)
T 2z81_A 57 LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135 (549)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred CCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcc
Confidence 99999998888899999999999999999987766 568999999999999999987 4577899999999999999985
Q ss_pred CCCCc-hhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCC-
Q 002350 231 NGSLP-SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSY- 308 (933)
Q Consensus 231 ~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~- 308 (933)
.+.+| ..+.++++|++|++++|.+++..| ..++++++|++|+++.+... .++...+..+++|++|++++|++++..
T Consensus 136 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 213 (549)
T 2z81_A 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQS-QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQF 213 (549)
T ss_dssp CCEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCC
T ss_pred ccccCHhhhhcccccCeeeccCCcccccCh-hhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccc
Confidence 44444 689999999999999999987666 56778888888888776542 222222334677888888888877642
Q ss_pred -c-hhhhCCCCCCEEEccCCCCcccchhHHH---hCCCCCCEEEcCCCCCcCcCcCC------cccCCCccEEEccCCcC
Q 002350 309 -P-DFLLHQYHLKYLDLSHNKLVGNFPTWLL---RNNPKLEVLLLKNNSFSGILQLP------KAKHDFLHHLDISCNNF 377 (933)
Q Consensus 309 -p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~---~~l~~L~~L~L~~n~l~~~~~~~------~~~~~~L~~L~Ls~n~l 377 (933)
| .....+++|+.|++++|.+++..+..+. ..+++|+.+++++|.+.+....+ +..+.+|+.|++.++.+
T Consensus 214 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 293 (549)
T 2z81_A 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293 (549)
T ss_dssp CCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBC
T ss_pred cccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccccccc
Confidence 1 2234567788888888877765554432 34677788888887776653221 23455666666666654
Q ss_pred CCC-----CChhhhhcCCCccEEEccCCCCCCCccccc-cCCCCCCEEEcCCCcCCCCcchh--hhcCCCCCCEEECcCC
Q 002350 378 RGK-----LPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNYFSGGLSQS--VVTGCFSLELLDLSNN 449 (933)
Q Consensus 378 ~~~-----~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~~~~l~~L~~L~Ls~n 449 (933)
... ++. +....++|++|++++|.+. .+|..+ ..+++|++|++++|++.+.++.. .+..+++|++|++++|
T Consensus 294 ~~~~~~~~l~~-~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 371 (549)
T 2z81_A 294 PQFYLFYDLST-VYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371 (549)
T ss_dssp SCGGGSCCCCH-HHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred chhhhcccchh-hhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC
Confidence 321 111 1122445555555555554 334333 34555555555555554433321 1234445555555555
Q ss_pred cCCCcCc--hhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCC
Q 002350 450 NFEGQFF--SEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN 527 (933)
Q Consensus 450 ~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~ 527 (933)
++++..+ ..+..+++|++|++++|+++ .+|..+..+++ |++|++++|++++
T Consensus 372 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~-------------------------L~~L~Ls~N~l~~- 424 (549)
T 2z81_A 372 HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK-------------------------MRFLNLSSTGIRV- 424 (549)
T ss_dssp CCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTT-------------------------CCEEECTTSCCSC-
T ss_pred cccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccc-------------------------ccEEECCCCCccc-
Confidence 5543321 23444445555555555444 34444444444 5555555554442
Q ss_pred cchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCC
Q 002350 528 VPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHS 607 (933)
Q Consensus 528 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 607 (933)
+|..+ .++|++|++++|++++.+ ..+++|++|++++|+++ .+|. ...+++|++|++++|++++..|..+..++
T Consensus 425 l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 497 (549)
T 2z81_A 425 VKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLT 497 (549)
T ss_dssp CCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCT
T ss_pred ccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCc
Confidence 22221 135666666666665532 24667777777777776 4454 35677888888888888887777888888
Q ss_pred CccEEEcCCCcCCCCCc
Q 002350 608 NLRFLLLGGNHLQGPIP 624 (933)
Q Consensus 608 ~L~~L~L~~N~l~~~~p 624 (933)
+|++|++++|++.+..|
T Consensus 498 ~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 498 SLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TCCEEECCSSCBCCCHH
T ss_pred ccCEEEecCCCccCCCc
Confidence 88888888888887766
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-46 Score=447.86 Aligned_cols=437 Identities=19% Similarity=0.256 Sum_probs=339.4
Q ss_pred CcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCC------cc------cchhHHHhCCCCCCEEEcCCCCCcCcCcC
Q 002350 292 SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL------VG------NFPTWLLRNNPKLEVLLLKNNSFSGILQL 359 (933)
Q Consensus 292 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l------~~------~~p~~~~~~l~~L~~L~L~~n~l~~~~~~ 359 (933)
.+++.|+|+++++.|.+|..++++++|++|+|++|.+ .+ .+|.... ..|+ ++++++.+.+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~---~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK---QKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHH---HHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHH---HHHH-hhHHHhhhccCchh
Confidence 4678899999999999999999999999999999865 22 3333321 2233 34443333322111
Q ss_pred Ccc-------------------cCCCccEEEcc--CCcCCCCCChhhhhcCCCccEEEccCCCCCCC-------------
Q 002350 360 PKA-------------------KHDFLHHLDIS--CNNFRGKLPHNMGVILQKLMYMDISKNCFEGN------------- 405 (933)
Q Consensus 360 ~~~-------------------~~~~L~~L~Ls--~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~------------- 405 (933)
.+. ....++.+.+. .|++++ +|..++. +++|++|++++|.+++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 234 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEY 234 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccch
Confidence 111 11122222222 567876 8887764 89999999999999875
Q ss_pred ----cccccc--CCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCc-CCC-cCchhhccc------CcCCeEEcc
Q 002350 406 ----IPYSAG--EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN-FEG-QFFSEYMNL------TRLRHLYFE 471 (933)
Q Consensus 406 ----~p~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l------~~L~~L~L~ 471 (933)
+|..++ ++++|++|++++|.+.+.+|..+ ..+++|++|++++|+ +++ .+|..+..+ ++|++|+++
T Consensus 235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred hcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC
Confidence 888888 89999999999999888888654 688899999999998 888 788887776 899999999
Q ss_pred Cccccccccc--cccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCC-CCEEEccCCcC
Q 002350 472 NNNFSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER-LRILDISENRL 548 (933)
Q Consensus 472 ~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l 548 (933)
+|+++ .+|. .+..+++|++|++++|+++|.+| .+..++. |+.|++++|+++ .+|..+..+++ |+.|++++|++
T Consensus 314 ~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~-L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 314 YNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK-LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp SSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE-ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred CCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC-CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence 99998 7887 88899999999999999988888 7777776 999999999988 78888888888 99999999998
Q ss_pred ccccCccc-c--CCCCceEEeecCcCcccCchhhc-------cCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCc
Q 002350 549 SGPIASSL-N--LSSVEHLSLQKNALNGLIPGELF-------RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH 618 (933)
Q Consensus 549 ~~~~~~~~-~--l~~L~~L~L~~n~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 618 (933)
+ .+|..+ . +++|++|++++|.+.+.+|..+. .+++|++|++++|++++..+..+..+++|++|+|++|+
T Consensus 390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence 8 566655 3 44899999999999988888887 77889999999999984434445668899999999999
Q ss_pred CCCCCchh-hhcC-------CCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCC
Q 002350 619 LQGPIPDQ-LCQL-------QKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSS 690 (933)
Q Consensus 619 l~~~~p~~-l~~l-------~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (933)
++ .+|.. +... ++|+.|++++|+++ .+|..+..
T Consensus 469 l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------------------------------- 509 (636)
T 4eco_A 469 LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA------------------------------------- 509 (636)
T ss_dssp CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST-------------------------------------
T ss_pred CC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh-------------------------------------
Confidence 98 55544 3333 28999999999988 66654430
Q ss_pred ccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeec------c
Q 002350 691 NTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNL------S 764 (933)
Q Consensus 691 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L------s 764 (933)
..+++|+.|||++|++++ +|..++.+++|+.|+| +
T Consensus 510 --------------------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 510 --------------------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp --------------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred --------------------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence 023467889999999997 8888999999999999 5
Q ss_pred ccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCC
Q 002350 765 NNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 821 (933)
Q Consensus 765 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p 821 (933)
+|++.+.+|..++++++|++|||++|++ +.+|..+. ++|+.||+++|++...-+
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccccH
Confidence 6788889999999999999999999999 68888766 789999999998875443
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.6e-43 Score=424.07 Aligned_cols=277 Identities=20% Similarity=0.247 Sum_probs=181.5
Q ss_pred hcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCC
Q 002350 459 YMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERL 538 (933)
Q Consensus 459 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 538 (933)
+....+++.+.+.++.+.... .+.....++.|++.+|.+.+..+. .+.. |+.+++.+|...... ....+++|
T Consensus 302 ~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~-L~~l~l~~n~~~~~~--~~~~l~~L 373 (635)
T 4g8a_A 302 FNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKS-LKRLTFTSNKGGNAF--SEVDLPSL 373 (635)
T ss_dssp TGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTT-CCEEEEESCCSCCBC--CCCBCTTC
T ss_pred hhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchh-hhhcccccccCCCCc--cccccccc
Confidence 444566666666666655322 234455677777777766533222 1223 666666666655322 24456777
Q ss_pred CEEEccCCcCccc--cCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCc-hhhhcCCCccEEEc
Q 002350 539 RILDISENRLSGP--IASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP-HQINEHSNLRFLLL 614 (933)
Q Consensus 539 ~~L~Ls~n~l~~~--~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L 614 (933)
+.+++++|.+... .+... .+.+|+.+++..|..... +..+..+++|+.+++++|......+ ..+..+++++.+++
T Consensus 374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred ccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccc
Confidence 7777777766432 22222 566777777777666543 4456667777777777776654433 44566777777777
Q ss_pred CCCcCCCCCchhhhcCCCCCEEEccCCcCCC-CCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccc
Q 002350 615 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG-SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTM 693 (933)
Q Consensus 615 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (933)
+.|.+.+..+..+..+++|+.|++++|++.+ .+|..+.
T Consensus 453 s~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~----------------------------------------- 491 (635)
T 4g8a_A 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT----------------------------------------- 491 (635)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT-----------------------------------------
T ss_pred cccccccccccccccchhhhhhhhhhcccccccCchhhh-----------------------------------------
Confidence 7777777777777777777777777776432 2233222
Q ss_pred cchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccc
Q 002350 694 FGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP 773 (933)
Q Consensus 694 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p 773 (933)
.+++|+.|||++|++++.+|..|+.+++|++|+|++|+|++.+|
T Consensus 492 ------------------------------------~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~ 535 (635)
T 4g8a_A 492 ------------------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 535 (635)
T ss_dssp ------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred ------------------------------------hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence 23456778888888887777778888888888888888887777
Q ss_pred hhccCCCCCCEEECcCCeecccCCcCCcCC-CCCCeEEccCCcCcccCC
Q 002350 774 ESFSNLKMIESLDISYNKLTGQIPPQLTAL-NFLSIFNVSYNNLSGRTP 821 (933)
Q Consensus 774 ~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~~p 821 (933)
..|+++++|++|||++|+|++.+|..+..+ ++|++|++++|+++|.+.
T Consensus 536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 778888888888888888888778777777 578888887777766554
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.2e-44 Score=419.48 Aligned_cols=457 Identities=22% Similarity=0.247 Sum_probs=289.9
Q ss_pred CEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEE
Q 002350 120 QSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEM 199 (933)
Q Consensus 120 ~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L 199 (933)
++||+++|.++. +| ..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..| ..++++++|++|
T Consensus 3 ~~l~ls~n~l~~-ip----~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VP----KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSS-CC----CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEE
T ss_pred ceEecCCCCccc-cc----cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEE
Confidence 467888887763 44 2333 788888888888887777888888888888888888877655 567888888888
Q ss_pred ECCCCCCCCcchhhcCCCCCCCEEEccCCcCCC-CCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEeccccc
Q 002350 200 NLERNFIGSPLITCLKNLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRN 278 (933)
Q Consensus 200 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~ 278 (933)
+|++|.+++ +|.. .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++ ..+..+++|
T Consensus 75 ~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L--------- 138 (520)
T 2z7x_B 75 DLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHL--------- 138 (520)
T ss_dssp ECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTS---------
T ss_pred ecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccc---------
Confidence 888888874 5555 78888888888888876 467788888888888888888764 233444443
Q ss_pred CccccccCCCCCCCcceEEEccCCCC--CCCCchhhhCCC-CCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCC---
Q 002350 279 NTLHVKTENWLPTSQLIVLGLTKCNL--NGSYPDFLLHQY-HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNS--- 352 (933)
Q Consensus 279 ~~~~~~~~~~~~~~~L~~L~L~~n~l--~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~--- 352 (933)
+|+.|++++|.+ .+..|..+..+. ....+++++|.+.+.++...+..+++|+.|++++|.
T Consensus 139 --------------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 204 (520)
T 2z7x_B 139 --------------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204 (520)
T ss_dssp --------------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT
T ss_pred --------------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccc
Confidence 124455555555 444555544443 223455566665555554444455555555555554
Q ss_pred ----CcCcCcCCcccCCCccEEEccCCcCCCCCChhhhh--cCCCccEEEccCCCCCCCccccc-----cCCCCCCEEEc
Q 002350 353 ----FSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGV--ILQKLMYMDISKNCFEGNIPYSA-----GEMKELSLLDL 421 (933)
Q Consensus 353 ----l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~L 421 (933)
+.+..+ .+..+++|+.|++++|.+++..+..+.. ..++|++|++++|.+.+.+|..+ ..+++|+.+++
T Consensus 205 ~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l 283 (520)
T 2z7x_B 205 KCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283 (520)
T ss_dssp TTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEE
T ss_pred ccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccc
Confidence 222211 2345555566666555554322222211 13466666666666666666555 55556666666
Q ss_pred CCCcCCCCcchhhhcCC---CCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCc
Q 002350 422 SRNYFSGGLSQSVVTGC---FSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNM 498 (933)
Q Consensus 422 s~n~l~~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 498 (933)
++|.+ .+|...+..+ .+|+.|++++|.+.... ....+++|++|++++|+
T Consensus 284 ~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--------------------------~~~~l~~L~~L~Ls~n~ 335 (520)
T 2z7x_B 284 VSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--------------------------CPSKISPFLHLDFSNNL 335 (520)
T ss_dssp EECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--------------------------CCSSCCCCCEEECCSSC
T ss_pred cccce--ecchhhhhcccccCceeEEEcCCCcccccc--------------------------chhhCCcccEEEeECCc
Confidence 65555 3442111111 33444444444443221 11344555555555555
Q ss_pred CCCCChhhHhhhccccceeecCCCcCCC--CcchhccCCCCCCEEEccCCcCccccCcc-c-cCCCCceEEeecCcCccc
Q 002350 499 LSGHIPHWMGNFSSELEILSMSKNHLEG--NVPVQLNNLERLRILDISENRLSGPIASS-L-NLSSVEHLSLQKNALNGL 574 (933)
Q Consensus 499 l~~~~p~~l~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~-~l~~L~~L~L~~n~l~~~ 574 (933)
+++.+|..+..++. |++|++++|++++ .+|..+..+++|++|++++|++.+.+|.. + .+++|++|++++|++++.
T Consensus 336 l~~~~~~~~~~l~~-L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 414 (520)
T 2z7x_B 336 LTDTVFENCGHLTE-LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414 (520)
T ss_dssp CCTTTTTTCCCCSS-CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG
T ss_pred cChhhhhhhccCCC-CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc
Confidence 55545555554444 5555555555554 34455666777777777777776644432 3 667777777777777766
Q ss_pred CchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCch-hhhcCCCCCEEEccCCcCCCCCC
Q 002350 575 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPD-QLCQLQKLAMMDLSRNKFSGSIP 648 (933)
Q Consensus 575 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~~p 648 (933)
+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++ +|. .+..+++|+.|++++|++++..+
T Consensus 415 ~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 415 IFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 666554 68999999999998 788888899999999999999995 555 48899999999999999987655
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.9e-44 Score=418.94 Aligned_cols=461 Identities=20% Similarity=0.214 Sum_probs=301.3
Q ss_pred CEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCC
Q 002350 172 CTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSH 251 (933)
Q Consensus 172 ~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 251 (933)
++||+++|.++.. | ..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~~i-p-~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHV-P-KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSC-C-CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcccc-c-cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 4677777777643 3 1232 6677777777776666666666667777777777766665566666666666666666
Q ss_pred CcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcc-
Q 002350 252 NNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG- 330 (933)
Q Consensus 252 n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~- 330 (933)
|.+++ + |.. .+++|++|++++|++++
T Consensus 79 N~l~~-l--------------------------------------------------p~~--~l~~L~~L~L~~N~l~~~ 105 (520)
T 2z7x_B 79 NKLVK-I--------------------------------------------------SCH--PTVNLKHLDLSFNAFDAL 105 (520)
T ss_dssp SCCCE-E--------------------------------------------------ECC--CCCCCSEEECCSSCCSSC
T ss_pred Cceee-c--------------------------------------------------Ccc--ccCCccEEeccCCccccc
Confidence 66541 1 111 45667777777777764
Q ss_pred cchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCc--cEEEccCCCC--CCCc
Q 002350 331 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKL--MYMDISKNCF--EGNI 406 (933)
Q Consensus 331 ~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L--~~L~Ls~n~l--~~~~ 406 (933)
.+|..+. .+++|++|++++|.+++. .+.. +++| ++|++++|.+ .+..
T Consensus 106 ~~p~~~~-~l~~L~~L~L~~n~l~~~---~~~~-------------------------l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 106 PICKEFG-NMSQLKFLGLSTTHLEKS---SVLP-------------------------IAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp CCCGGGG-GCTTCCEEEEEESSCCGG---GGGG-------------------------GTTSCEEEEEEEECTTTTSSCC
T ss_pred cchhhhc-cCCcceEEEecCcccchh---hccc-------------------------cccceeeEEEeecccccccccc
Confidence 3444443 555666555555555431 2223 3344 5555555554 4444
Q ss_pred cccccCCC-CCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccC
Q 002350 407 PYSAGEMK-ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS 485 (933)
Q Consensus 407 p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 485 (933)
|..+..+. +...+++++|.+.+.++...+..+++|+.+++++|....... .+.+.++ .+..
T Consensus 157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----------------~~~~~~~-~l~~ 218 (520)
T 2z7x_B 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-----------------YFLSILA-KLQT 218 (520)
T ss_dssp TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-----------------HHHHHHH-GGGG
T ss_pred cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc-----------------eeecchh-hhcc
Confidence 44443333 122345555555544444444444445555554443100000 0222333 3445
Q ss_pred CCCCCEEEccCCcCCCCChhhHhh---hccccceeecCCCcCCCCcchhc-----cCCCCCCEEEccCCcCccccC-ccc
Q 002350 486 STSLQVLDISNNMLSGHIPHWMGN---FSSELEILSMSKNHLEGNVPVQL-----NNLERLRILDISENRLSGPIA-SSL 556 (933)
Q Consensus 486 l~~L~~L~Ls~n~l~~~~p~~l~~---~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~-~~~ 556 (933)
+++|+.|++++|.+++..+..+.. .+ +|++|++++|++++.+|..+ ..+++|+.+++++|.+ .+| ..+
T Consensus 219 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~ 295 (520)
T 2z7x_B 219 NPKLSNLTLNNIETTWNSFIRILQLVWHT-TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYI 295 (520)
T ss_dssp CTTCCEEEEEEEEEEHHHHHHHHHHHHTS-SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHH
T ss_pred ccchhhccccccccCHHHHHHHHHHhhhC-cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhh
Confidence 555555555555554332222211 12 37777777777776677666 7778888888888877 333 222
Q ss_pred -c---CCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCC--CCchhhhcC
Q 002350 557 -N---LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQG--PIPDQLCQL 630 (933)
Q Consensus 557 -~---l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~l~~l 630 (933)
. ..+|+.|++++|.+.+.. .+..+++|++|++++|++++.+|..++.+++|++|++++|++++ .+|..+..+
T Consensus 296 ~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l 373 (520)
T 2z7x_B 296 YEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373 (520)
T ss_dssp HHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC
T ss_pred hcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhC
Confidence 2 256888888888876432 12577889999999999998888888899999999999999986 456788999
Q ss_pred CCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhch
Q 002350 631 QKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAID 710 (933)
Q Consensus 631 ~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 710 (933)
++|+.|++++|++++.+|....
T Consensus 374 ~~L~~L~Ls~N~l~~~l~~~~~---------------------------------------------------------- 395 (520)
T 2z7x_B 374 KSLQQLDISQNSVSYDEKKGDC---------------------------------------------------------- 395 (520)
T ss_dssp TTCCEEECCSSCCBCCGGGCSC----------------------------------------------------------
T ss_pred CCCCEEECCCCcCCcccccchh----------------------------------------------------------
Confidence 9999999999999876664310
Q ss_pred hhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCC
Q 002350 711 ERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYN 790 (933)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 790 (933)
..+++|+.|++++|++++.+|..+. ++|+.|+|++|+++ .+|..+.++++|++|||++|
T Consensus 396 ------------------~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 396 ------------------SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp ------------------CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred ------------------ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCC
Confidence 1234688899999999988887765 78999999999999 78888889999999999999
Q ss_pred eecccCCcC-CcCCCCCCeEEccCCcCcccCC
Q 002350 791 KLTGQIPPQ-LTALNFLSIFNVSYNNLSGRTP 821 (933)
Q Consensus 791 ~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~~p 821 (933)
+++ .+|.. +..+++|++|++++|+++|.++
T Consensus 455 ~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 455 QLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 999 56665 8999999999999999999876
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.3e-42 Score=415.76 Aligned_cols=545 Identities=19% Similarity=0.192 Sum_probs=374.9
Q ss_pred CCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEE
Q 002350 145 KQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILD 224 (933)
Q Consensus 145 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 224 (933)
+++++|||++|+|++..+..|.++++|++|||++|+|++..+ ..|.++++|++|+|++|++++..+..|+++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~-~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcCh-hHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 367777777777776666677777777777777777765544 4566677777777777776665556666777777777
Q ss_pred ccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCC
Q 002350 225 ISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNL 304 (933)
Q Consensus 225 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 304 (933)
|++|++++..+..|+++++|++|++++|.+++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~----------------------------------------------- 163 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSF----------------------------------------------- 163 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------------------------------------------
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccC-----------------------------------------------
Confidence 777776655555666666666666666665421
Q ss_pred CCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChh
Q 002350 305 NGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHN 384 (933)
Q Consensus 305 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 384 (933)
..|..+..+++|++|++++|++++..|..+. .+.+++ .....++++.|.+. .++..
T Consensus 164 --~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~L~~l~--------------------~~~~~~~ls~n~l~-~i~~~ 219 (635)
T 4g8a_A 164 --KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMP--------------------LLNLSLDLSLNPMN-FIQPG 219 (635)
T ss_dssp --CCCGGGGGCTTCCEEECCSSCCCEECGGGGH-HHHTCT--------------------TCCCEEECTTCCCC-EECTT
T ss_pred --CCchhhccchhhhhhcccCcccccccccccc-chhhhh--------------------hhhhhhhcccCccc-ccCcc
Confidence 2456677778888888888888755554332 222111 11234455555554 23333
Q ss_pred hhhcCCCccEEEccCCCCCCC-ccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccC
Q 002350 385 MGVILQKLMYMDISKNCFEGN-IPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLT 463 (933)
Q Consensus 385 ~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 463 (933)
.+. ...++.+++.+|..... .+..+..+..++...+..+.... ...+.......+....
T Consensus 220 ~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~-------------------~~~l~~~~~~~~~~~~ 279 (635)
T 4g8a_A 220 AFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN-------------------EGNLEKFDKSALEGLC 279 (635)
T ss_dssp TTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT-------------------SCCCSCCCTTTTGGGG
T ss_pred ccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccc-------------------cccccccccccccccc
Confidence 322 33455566655543321 22234445555544443322210 0111122233344455
Q ss_pred cCCeEEccCcccc---ccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCE
Q 002350 464 RLRHLYFENNNFS---GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRI 540 (933)
Q Consensus 464 ~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 540 (933)
.+....+..+... ......+.....++.+++.++.+.. ++ .+..... ++.|++.+|.+.+..+ ..++.|+.
T Consensus 280 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~-~~~~~~~-L~~L~l~~~~~~~~~~---~~l~~L~~ 353 (635)
T 4g8a_A 280 NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-VK-DFSYNFG-WQHLELVNCKFGQFPT---LKLKSLKR 353 (635)
T ss_dssp GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-CG-GGGSCCC-CSEEEEESCEESSCCC---CBCTTCCE
T ss_pred chhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-cc-ccccchh-hhhhhcccccccCcCc---ccchhhhh
Confidence 5555555544322 2234445667789999999998763 32 2333444 9999999999875444 34678999
Q ss_pred EEccCCcCccccCccccCCCCceEEeecCcCc--ccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCc
Q 002350 541 LDISENRLSGPIASSLNLSSVEHLSLQKNALN--GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH 618 (933)
Q Consensus 541 L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 618 (933)
+++..|.+.... ....+++|+.|++++|.+. +..+..+..+.+|+.+++..|.+.. .+..+..+++|+.+++++|.
T Consensus 354 l~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~ 431 (635)
T 4g8a_A 354 LTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN 431 (635)
T ss_dssp EEEESCCSCCBC-CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSE
T ss_pred cccccccCCCCc-ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcc
Confidence 999999876543 3347899999999999885 3456777888999999999998874 55677889999999999988
Q ss_pred CCCCCc-hhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchh
Q 002350 619 LQGPIP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMW 697 (933)
Q Consensus 619 l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (933)
.....+ ..+..+++++.+++++|.+.+..|..+..
T Consensus 432 ~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~-------------------------------------------- 467 (635)
T 4g8a_A 432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-------------------------------------------- 467 (635)
T ss_dssp EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccc--------------------------------------------
Confidence 776554 56889999999999999998766654432
Q ss_pred hhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcC-CCCCChhhhhccccCeeeccccccccccchhc
Q 002350 698 RWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL-TGEIPSDIGQLQAILALNLSNNSLSGSIPESF 776 (933)
Q Consensus 698 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l-~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 776 (933)
++.++.|+|++|.+ .+.+|..++.+++|++|+|++|++++.+|..|
T Consensus 468 ---------------------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f 514 (635)
T 4g8a_A 468 ---------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514 (635)
T ss_dssp ---------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ---------------------------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHH
Confidence 34678899999985 45678899999999999999999999999999
Q ss_pred cCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCC-CcC-CccCcccccCCCCCCCccccC-------
Q 002350 777 SNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-GQF-ATFDESSYRGNPSLCAWLIQQ------- 847 (933)
Q Consensus 777 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~-~~~~~~~~~gN~~lc~~~l~~------- 847 (933)
+++++|++|+|++|+|++..|..|..+++|++||+++|+|++.+|.. ..+ .++....+.|||+.|+|.+.+
T Consensus 515 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~ 594 (635)
T 4g8a_A 515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 594 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHH
T ss_pred cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999865 233 467778899999999987431
Q ss_pred CCCCCCCCCccCCCCCCcc
Q 002350 848 KYSRTLKPTTTQASGAEEE 866 (933)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~ 866 (933)
.-........+.|..|+..
T Consensus 595 ~~~~~~~~~~~~C~~P~~~ 613 (635)
T 4g8a_A 595 QRQLLVEVERMECATPSDK 613 (635)
T ss_dssp TTTTBSCGGGCBBCSSTTT
T ss_pred CCCccCCCCCceeCCchHH
Confidence 2222233345678776543
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-43 Score=426.89 Aligned_cols=439 Identities=19% Similarity=0.249 Sum_probs=336.7
Q ss_pred CcceEEEccCCCCCCCCchhhhCCCCCCEEEc-cCCCCcccchhHHHhCCCCCC-----EEE-------c---CCCCCc-
Q 002350 292 SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDL-SHNKLVGNFPTWLLRNNPKLE-----VLL-------L---KNNSFS- 354 (933)
Q Consensus 292 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-s~n~l~~~~p~~~~~~l~~L~-----~L~-------L---~~n~l~- 354 (933)
.+++.|+|+++++.|.+|..++++++|++|+| ++|.++|..|.........+. .+. + ....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46788888888888888888888888888888 777666553321000000000 000 0 000000
Q ss_pred ----------CcCcCCcccCCCccEEEccC--CcCCCCCChhhhhcCCCccEEEccCCCCCC-----------------C
Q 002350 355 ----------GILQLPKAKHDFLHHLDISC--NNFRGKLPHNMGVILQKLMYMDISKNCFEG-----------------N 405 (933)
Q Consensus 355 ----------~~~~~~~~~~~~L~~L~Ls~--n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~-----------------~ 405 (933)
............++.+.+.. |++++ +|..+.. +++|++|+|++|.+++ .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00001111222334444443 77776 8887764 8999999999999987 3
Q ss_pred cccccc--CCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCc-CCC-cCchhhcccC-------cCCeEEccCcc
Q 002350 406 IPYSAG--EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN-FEG-QFFSEYMNLT-------RLRHLYFENNN 474 (933)
Q Consensus 406 ~p~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~ 474 (933)
+|..++ ++++|++|+|++|.+.+.+|.. +..+++|++|++++|+ +++ .+|..+..++ +|++|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 888877 9999999999999998888855 4688999999999998 888 7887777665 99999999999
Q ss_pred ccccccc--cccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCC-CCEEEccCCcCccc
Q 002350 475 FSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER-LRILDISENRLSGP 551 (933)
Q Consensus 475 l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~ 551 (933)
++ .+|. .+..+++|++|++++|+++ .+| .+..++. |+.|++++|+++ .+|..+..+++ |+.|++++|++. .
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~-L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK-LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE-ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc-ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence 98 7888 8999999999999999998 888 7777776 999999999999 78888999998 999999999998 5
Q ss_pred cCccc-cC--CCCceEEeecCcCcccCchhh---c--cCCCccEEeCcCCcCcccCchhh-hcCCCccEEEcCCCcCCCC
Q 002350 552 IASSL-NL--SSVEHLSLQKNALNGLIPGEL---F--RSCKLVTLNLRDNTFSGRIPHQI-NEHSNLRFLLLGGNHLQGP 622 (933)
Q Consensus 552 ~~~~~-~l--~~L~~L~L~~n~l~~~~p~~~---~--~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~ 622 (933)
+|..+ .+ ++|+.|++++|++.+.+|... . .+++|+.|++++|+++ .+|..+ ..+++|+.|+|++|+++ .
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ 711 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-S 711 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-C
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-c
Confidence 66665 33 459999999999988766322 2 3458999999999999 556554 58899999999999999 5
Q ss_pred Cchhhhc--------CCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCcccc
Q 002350 623 IPDQLCQ--------LQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF 694 (933)
Q Consensus 623 ~p~~l~~--------l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (933)
+|..+.. +++|+.|+|++|+++ .+|..+..
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~----------------------------------------- 749 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA----------------------------------------- 749 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST-----------------------------------------
T ss_pred cChHHhccccccccccCCccEEECCCCCCc-cchHHhhh-----------------------------------------
Confidence 6655433 238999999999998 67765430
Q ss_pred chhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccc------ccc
Q 002350 695 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSN------NSL 768 (933)
Q Consensus 695 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~------N~l 768 (933)
..+++|+.|||++|++++ +|..++.+++|+.|+|++ |++
T Consensus 750 ----------------------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 750 ----------------------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp ----------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred ----------------------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence 124578889999999997 899999999999999976 889
Q ss_pred ccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCC
Q 002350 769 SGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 821 (933)
Q Consensus 769 ~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p 821 (933)
.+.+|..|+++++|+.|+|++|++ +.+|..+. ++|+.|||++|++....+
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred cccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 999999999999999999999999 79998876 699999999999876554
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.1e-41 Score=398.46 Aligned_cols=324 Identities=17% Similarity=0.191 Sum_probs=224.8
Q ss_pred cEEEccCCCC--CCCccccccCCC-CCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEE
Q 002350 393 MYMDISKNCF--EGNIPYSAGEMK-ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLY 469 (933)
Q Consensus 393 ~~L~Ls~n~l--~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 469 (933)
++|++++|.+ ++..|..+..+. ..-.++++.|.+.+.++...+..+++|+.+++++|+....
T Consensus 172 ~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--------------- 236 (562)
T 3a79_B 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ--------------- 236 (562)
T ss_dssp EEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH---------------
T ss_pred eEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc---------------
Confidence 6666666655 555555554433 1113455666655545444444455555555555431100
Q ss_pred ccCccccccccccccCCCCCCEEEccCCcCCCCC----hhhHhhhccccceeecCCCcCCCCcchhc-----cCCCCCCE
Q 002350 470 FENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHI----PHWMGNFSSELEILSMSKNHLEGNVPVQL-----NNLERLRI 540 (933)
Q Consensus 470 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----p~~l~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~ 540 (933)
.+.+ ....+..++.|+.+++.++.+.+.. +..+. .. +|++|++++|.+++.+|..+ ..++.|+.
T Consensus 237 ----~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~-~~-~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~ 309 (562)
T 3a79_B 237 ----RLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW-PR-PVEYLNIYNLTITERIDREEFTYSETALKSLMI 309 (562)
T ss_dssp ----HHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT-TS-SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEE
T ss_pred ----hHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh-cc-cccEEEEeccEeeccccchhhhcccccchheeh
Confidence 0111 1122344455555555555544221 11111 12 37777777777777777666 66666777
Q ss_pred EEccCCcCccccCc-cc----cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcC
Q 002350 541 LDISENRLSGPIAS-SL----NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 615 (933)
Q Consensus 541 L~Ls~n~l~~~~~~-~~----~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 615 (933)
++++.+.+ .+|. .+ ...+|++|++++|.+.... ....+++|++|++++|++++..|..+..+++|++|+++
T Consensus 310 ~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 385 (562)
T 3a79_B 310 EHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385 (562)
T ss_dssp EEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECC
T ss_pred hhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECC
Confidence 77777766 3331 11 2367899999999876432 12678899999999999998899999999999999999
Q ss_pred CCcCCCC--CchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccc
Q 002350 616 GNHLQGP--IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTM 693 (933)
Q Consensus 616 ~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (933)
+|++++. +|..+.++++|+.|++++|++++.+|....
T Consensus 386 ~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----------------------------------------- 424 (562)
T 3a79_B 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC----------------------------------------- 424 (562)
T ss_dssp SSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC-----------------------------------------
T ss_pred CCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh-----------------------------------------
Confidence 9999973 356789999999999999999976765311
Q ss_pred cchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccc
Q 002350 694 FGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP 773 (933)
Q Consensus 694 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p 773 (933)
..+++|+.|++++|++++.+|..+. ++|+.|+|++|+++ .+|
T Consensus 425 -----------------------------------~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip 466 (562)
T 3a79_B 425 -----------------------------------AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIP 466 (562)
T ss_dssp -----------------------------------CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCC
T ss_pred -----------------------------------cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccC
Confidence 1234788899999999988887765 78999999999999 688
Q ss_pred hhccCCCCCCEEECcCCeecccCCcC-CcCCCCCCeEEccCCcCcccCCC
Q 002350 774 ESFSNLKMIESLDISYNKLTGQIPPQ-LTALNFLSIFNVSYNNLSGRTPD 822 (933)
Q Consensus 774 ~~~~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~~p~ 822 (933)
..+.++++|++|||++|+++ .+|.. +..+++|++|++++|+++|.+|.
T Consensus 467 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 467 KDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 77789999999999999999 56665 99999999999999999998874
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-40 Score=393.89 Aligned_cols=180 Identities=23% Similarity=0.336 Sum_probs=125.5
Q ss_pred CcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCC--CcchhccCCCCCCE
Q 002350 463 TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG--NVPVQLNNLERLRI 540 (933)
Q Consensus 463 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~ 540 (933)
.+|++|++++|.+.... ....+++|++|++++|++++.+|..+..++. |+.|++++|++++ .+|..+.++++|+.
T Consensus 331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR-LQTLILQRNGLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSS-CCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCC-CCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence 34555555555443211 1134556666666666666555555555555 6666666666664 23455777777888
Q ss_pred EEccCCcCccccCc-cc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCc
Q 002350 541 LDISENRLSGPIAS-SL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH 618 (933)
Q Consensus 541 L~Ls~n~l~~~~~~-~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 618 (933)
|++++|++++.+|. .+ .+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|+|++|+
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSC
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCC
Confidence 88888887774443 34 678888888888888776665543 68999999999998 677777789999999999999
Q ss_pred CCCCCchh-hhcCCCCCEEEccCCcCCCCCCc
Q 002350 619 LQGPIPDQ-LCQLQKLAMMDLSRNKFSGSIPP 649 (933)
Q Consensus 619 l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~~p~ 649 (933)
+++ +|.. +..+++|+.|++++|++++..|.
T Consensus 485 l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 485 LKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 995 5554 88999999999999999976653
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.7e-39 Score=373.89 Aligned_cols=375 Identities=19% Similarity=0.223 Sum_probs=290.5
Q ss_pred EEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcC
Q 002350 369 HLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 448 (933)
Q Consensus 369 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 448 (933)
.++.+++.++ .+|. + .++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...+.++++|++|++++
T Consensus 14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4555566655 5565 2 467777777777777666777777777777777777776666666667777788888888
Q ss_pred CcCCCcCchhhcccCcCCeEEccCcccccccccc--ccCCCCCCEEEccCCcCCCCChhh-HhhhccccceeecCCCcCC
Q 002350 449 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDG--LLSSTSLQVLDISNNMLSGHIPHW-MGNFSSELEILSMSKNHLE 525 (933)
Q Consensus 449 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~p~~-l~~~~~~L~~L~L~~n~l~ 525 (933)
|.+.+..|..+.++++|++|++++|.+++..+.. +..+++|++|++++|++++..|.. +..++. |++|++++|+++
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~ 167 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR-FHVLDLTFNKVK 167 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT-CCEEECTTCCBS
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc-ccEEeCCCCccc
Confidence 8777777777777788888888888777644443 777778888888888877666655 555655 888888888877
Q ss_pred CCcchhccCC--CCCCEEEccCCcCccccCcc---------ccCCCCceEEeecCcCcccCchhhccC---CCccEEeCc
Q 002350 526 GNVPVQLNNL--ERLRILDISENRLSGPIASS---------LNLSSVEHLSLQKNALNGLIPGELFRS---CKLVTLNLR 591 (933)
Q Consensus 526 ~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~---------~~l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls 591 (933)
+..+..+..+ .+|+.|++++|.+.+..+.. +.+++|++|++++|++.+..|..+... ++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 7777766655 67778888888776654432 245678888888888887777766554 788888888
Q ss_pred CCcCccc----------Cchhhhc--CCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhcccc
Q 002350 592 DNTFSGR----------IPHQINE--HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV 659 (933)
Q Consensus 592 ~N~l~~~----------~p~~l~~--l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~ 659 (933)
+|.+.+. .+..+.. .++|++|++++|++++..|..+..+++|+.|++++|++++..|..+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------ 321 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG------ 321 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT------
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC------
Confidence 8755432 2222322 368999999999999989999999999999999999998766665543
Q ss_pred CCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEc
Q 002350 660 GSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDL 739 (933)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 739 (933)
+++|+.|||
T Consensus 322 -----------------------------------------------------------------------l~~L~~L~L 330 (455)
T 3v47_A 322 -----------------------------------------------------------------------LTHLLKLNL 330 (455)
T ss_dssp -----------------------------------------------------------------------CTTCCEEEC
T ss_pred -----------------------------------------------------------------------cccCCEEEC
Confidence 346788999
Q ss_pred CCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCccc
Q 002350 740 SCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGR 819 (933)
Q Consensus 740 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 819 (933)
++|++++..|..++.+++|++|+|++|++++..|..|+++++|++|+|++|++++..+..+..+++|++|++++|+++|.
T Consensus 331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 99999988899999999999999999999999999999999999999999999987777889999999999999999999
Q ss_pred CCCCCcC
Q 002350 820 TPDKGQF 826 (933)
Q Consensus 820 ~p~~~~~ 826 (933)
+|....+
T Consensus 411 ~~~~~~l 417 (455)
T 3v47_A 411 CPRIDYL 417 (455)
T ss_dssp TTTTHHH
T ss_pred CCcchHH
Confidence 9965433
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.5e-39 Score=367.79 Aligned_cols=420 Identities=20% Similarity=0.261 Sum_probs=165.8
Q ss_pred CCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceE
Q 002350 193 LKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGL 272 (933)
Q Consensus 193 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 272 (933)
.++|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++++++|+.+++..|..
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------------ 70 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------------ 70 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------------
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------------
Confidence 34555555555555 44555566666666666666666555555555555443333322210
Q ss_pred ecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCC
Q 002350 273 LLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNS 352 (933)
Q Consensus 273 ~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 352 (933)
.++++|++++|++++ +|.. .++|++|++++|.+++ +|. ..++|++|++++|.
T Consensus 71 -------------------~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~ 122 (454)
T 1jl5_A 71 -------------------RQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNN 122 (454)
T ss_dssp -------------------HTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSC
T ss_pred -------------------cCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCc
Confidence 122334444444432 1211 2355555665555553 442 23455555555555
Q ss_pred CcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcch
Q 002350 353 FSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ 432 (933)
Q Consensus 353 l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 432 (933)
++++...+ ++|++|++++|++++ +| .+ ..+++|++|++++|.+++ +|.. .++|++|++++|++.+ +|.
T Consensus 123 l~~l~~~~----~~L~~L~L~~n~l~~-lp-~~-~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~~ 190 (454)
T 1jl5_A 123 LKALSDLP----PLLEYLGVSNNQLEK-LP-EL-QNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LPE 190 (454)
T ss_dssp CSCCCSCC----TTCCEEECCSSCCSS-CC-CC-TTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC
T ss_pred cCcccCCC----CCCCEEECcCCCCCC-Cc-cc-CCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Ccc
Confidence 54432211 344555555554442 44 22 234445555555554442 2321 1244444444444442 331
Q ss_pred hhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhcc
Q 002350 433 SVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS 512 (933)
Q Consensus 433 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~ 512 (933)
+..+++|++|++++|.+++ +|.. .++|++|++++|.++ .+|. +..+++|++|++++|++++ +|..
T Consensus 191 --~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~------ 255 (454)
T 1jl5_A 191 --LQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL------ 255 (454)
T ss_dssp --CTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC------
T ss_pred --ccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc------
Confidence 2344444444444444443 1111 124444444444444 3332 4444444444444444442 2221
Q ss_pred ccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcC
Q 002350 513 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 592 (933)
Q Consensus 513 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 592 (933)
.++|+.|++++|++++ +|.. +++|++|++++|++++. |. -.++|++|++++
T Consensus 256 ----------------------~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~ 306 (454)
T 1jl5_A 256 ----------------------PPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASS 306 (454)
T ss_dssp ----------------------CTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCS
T ss_pred ----------------------ccccCEEECCCCcccc-cCcc--cCcCCEEECcCCccCcc-cC---cCCcCCEEECcC
Confidence 1344444444444443 1211 24455555555555442 11 014566666666
Q ss_pred CcCcccCchhhhcC-CCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCC
Q 002350 593 NTFSGRIPHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLN 671 (933)
Q Consensus 593 N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~ 671 (933)
|++++ ++ .+ ++|++|++++|++++ +|.. +++|+.|++++|+++ .+|. .
T Consensus 307 N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~-~-------------------- 355 (454)
T 1jl5_A 307 NEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE-L-------------------- 355 (454)
T ss_dssp SCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC-C--------------------
T ss_pred CcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc-h--------------------
Confidence 66664 22 12 467777777777775 4443 467777777777776 3443 0
Q ss_pred CCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCC--CCC
Q 002350 672 SPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTG--EIP 749 (933)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g--~ip 749 (933)
+++|+.||+++|++++ .+|
T Consensus 356 -----------------------------------------------------------l~~L~~L~L~~N~l~~l~~ip 376 (454)
T 1jl5_A 356 -----------------------------------------------------------PQNLKQLHVEYNPLREFPDIP 376 (454)
T ss_dssp -----------------------------------------------------------CTTCCEEECCSSCCSSCCCCC
T ss_pred -----------------------------------------------------------hhhccEEECCCCCCCcCCCCh
Confidence 1246668888888877 666
Q ss_pred hhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecc--cCCcCCcCCCCCCeEEccCCcCcccCCC
Q 002350 750 SDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG--QIPPQLTALNFLSIFNVSYNNLSGRTPD 822 (933)
Q Consensus 750 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~ls~N~l~g~~p~ 822 (933)
..++. |+.|++.|.+|.. +++|++||+++|++++ .+|.+ ++.|.+.+|.+.+.+|.
T Consensus 377 ~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 377 ESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF 434 (454)
T ss_dssp TTCCE--------EECCC---------------------------------------------------------
T ss_pred HHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence 65543 3456777777763 5778888888888887 66654 45567788888877663
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.6e-38 Score=361.17 Aligned_cols=367 Identities=18% Similarity=0.198 Sum_probs=241.0
Q ss_pred CCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEE
Q 002350 341 PKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLD 420 (933)
Q Consensus 341 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 420 (933)
++|++|++++|.++++.+..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+++..|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 34555555555554443344455555555555555555444444334456666666666666555555566666666666
Q ss_pred cCCCcCCCCcch-hhhcCCCCCCEEECcCCcCCCcCchh-hcccCcCCeEEccCccccccccccccCC--CCCCEEEccC
Q 002350 421 LSRNYFSGGLSQ-SVVTGCFSLELLDLSNNNFEGQFFSE-YMNLTRLRHLYFENNNFSGKIKDGLLSS--TSLQVLDISN 496 (933)
Q Consensus 421 Ls~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~Ls~ 496 (933)
+++|.+++.++. ..+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 666666543322 22445566666666666666555544 5556666666666666665555554443 4566666666
Q ss_pred CcCCCCChhhH--------hhhccccceeecCCCcCCCCcchhccCC---CCCCEEEccCCcCccccCccccCCCCceEE
Q 002350 497 NMLSGHIPHWM--------GNFSSELEILSMSKNHLEGNVPVQLNNL---ERLRILDISENRLSGPIASSLNLSSVEHLS 565 (933)
Q Consensus 497 n~l~~~~p~~l--------~~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~ 565 (933)
|.+.+..+..+ ...+. |+.|++++|++++..|..+... ++|+.|++++|...+.....
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------- 258 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTS-ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH---------- 258 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCE-EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC----------
T ss_pred Ccccccchhhccccccccccccce-eeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch----------
Confidence 66553322211 12233 6666666666665555554333 56677777766654432211
Q ss_pred eecCcCcccCchhhcc--CCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcC
Q 002350 566 LQKNALNGLIPGELFR--SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 643 (933)
Q Consensus 566 L~~n~l~~~~p~~~~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 643 (933)
+.+.+..+..+.. .++|++|++++|++++..|..+..+++|++|++++|++++..|..|.++++|+.|++++|.+
T Consensus 259 ---~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 259 ---TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp ---CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ---hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 1122222222222 36889999999999988888899999999999999999988888899999999999999998
Q ss_pred CCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccce
Q 002350 644 SGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRY 723 (933)
Q Consensus 644 ~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 723 (933)
++..|..+.+
T Consensus 336 ~~~~~~~~~~---------------------------------------------------------------------- 345 (455)
T 3v47_A 336 GSIDSRMFEN---------------------------------------------------------------------- 345 (455)
T ss_dssp CEECGGGGTT----------------------------------------------------------------------
T ss_pred CCcChhHhcC----------------------------------------------------------------------
Confidence 7665655433
Q ss_pred eeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCc
Q 002350 724 EIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPP 798 (933)
Q Consensus 724 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~ 798 (933)
+++|+.|||++|++++..|..++.+++|++|+|++|++++..+..|+++++|++|+|++|++++..|.
T Consensus 346 -------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 346 -------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp -------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred -------cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 34678899999999988899999999999999999999988888889999999999999999988773
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.1e-38 Score=358.13 Aligned_cols=390 Identities=24% Similarity=0.289 Sum_probs=251.8
Q ss_pred CCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCC-------------CCEEEcCCCCCcCcC
Q 002350 291 TSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPK-------------LEVLLLKNNSFSGIL 357 (933)
Q Consensus 291 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~-------------L~~L~L~~n~l~~~~ 357 (933)
..+|++|++++|.+ +.+|..++++++|++|++++|.+.|.+|..+. .+.+ +++|++++|.+++++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 45677888888888 68888888889999999998888888887654 4443 588999999888864
Q ss_pred cCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcC
Q 002350 358 QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 437 (933)
Q Consensus 358 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 437 (933)
.. .++|++|++++|.+++ +|.. +++|++|++++|.+++ +|.. .++|++|++++|++++ +|. +..
T Consensus 88 ~~----~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp~--~~~ 151 (454)
T 1jl5_A 88 EL----PPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LPE--LQN 151 (454)
T ss_dssp SC----CTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CCC--CTT
T ss_pred CC----cCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Ccc--cCC
Confidence 42 3688999999999885 6642 5789999999998875 3321 2689999999999884 773 678
Q ss_pred CCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhcccccee
Q 002350 438 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEIL 517 (933)
Q Consensus 438 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L 517 (933)
+++|++|++++|++++ +|.. .++|++|++++|++++ +| .+..+++|++|++++|++++ +|... .+|++|
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~----~~L~~L 220 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP----LSLESI 220 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC----TTCCEE
T ss_pred CCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc----CcccEE
Confidence 8899999999998886 3433 3589999999999886 55 58888999999999998874 45422 348999
Q ss_pred ecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcc
Q 002350 518 SMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG 597 (933)
Q Consensus 518 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 597 (933)
++++|.++ .+| .+..+++|+.|++++|++++. |. .+++|++|++++|++++ +|.. .++|++|++++|++++
T Consensus 221 ~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~--~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 221 VAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD--LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp ECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS--CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred ECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc--cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence 99999888 566 488889999999999988763 32 24788888888888876 4443 3688888888888886
Q ss_pred cCchhhhcCCCccEEEcCCCcCCCCCchhhhcC-CCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCcc
Q 002350 598 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL-QKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD 676 (933)
Q Consensus 598 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 676 (933)
. |.. .++|++|++++|++++ ++ .+ ++|+.|++++|++++ +|..
T Consensus 292 l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~-------------------------- 335 (454)
T 1jl5_A 292 L-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL-------------------------- 335 (454)
T ss_dssp E-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC--------------------------
T ss_pred c-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc--------------------------
Confidence 2 211 2578888888888875 22 23 478888888888875 4432
Q ss_pred chhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhcc
Q 002350 677 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQ 756 (933)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 756 (933)
+++|+.||+++|+++ .+|. .++
T Consensus 336 ------------------------------------------------------~~~L~~L~L~~N~l~-~lp~---~l~ 357 (454)
T 1jl5_A 336 ------------------------------------------------------PPRLERLIASFNHLA-EVPE---LPQ 357 (454)
T ss_dssp ------------------------------------------------------CTTCCEEECCSSCCS-CCCC---CCT
T ss_pred ------------------------------------------------------CCcCCEEECCCCccc-cccc---hhh
Confidence 125677888888888 4666 467
Q ss_pred ccCeeecccccccc--ccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcc--cCCCC
Q 002350 757 AILALNLSNNSLSG--SIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG--RTPDK 823 (933)
Q Consensus 757 ~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g--~~p~~ 823 (933)
+|++|++++|++++ .+|.++++ |+.|.+.|.+|.. +++|++||+++|+++| .+|..
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCE--------EECCC----------------------------------
T ss_pred hccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence 88888888888887 67766543 3457777788764 4789999999999998 77743
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.4e-38 Score=339.02 Aligned_cols=296 Identities=26% Similarity=0.375 Sum_probs=219.3
Q ss_pred CCChHHHHHHHHHhhhhcccccccccCCCCCCCCCCCCCCCCCCCCCcc--cceeEecCCC--CcEEEEecCCCCCCCCC
Q 002350 26 KACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCH--WQRVKCNATT--GRVMQLSLKNTTRLNYP 101 (933)
Q Consensus 26 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~~~C~--w~gv~c~~~~--~~V~~l~l~~~~~l~l~ 101 (933)
+.|.++|++||++||+++.++ . .+++| ..+ ++||. |.||+|+..+ ++|+++++++... +
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~------~-~l~~W-~~~------~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l---~ 63 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNP------T-TLSSW-LPT------TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL---P 63 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCC------G-GGTTC-CTT------SCTTTTCSTTEEECCSSSCCCEEEEEEECCCC---S
T ss_pred CCCCHHHHHHHHHHHHhcCCc------c-cccCC-CCC------CCCCcCCCcceEeCCCCCCceEEEEECCCCCc---c
Confidence 369999999999999999543 3 68999 554 67998 9999998655 8999999988764 3
Q ss_pred CCCcccccccccCCCCCCCEeeCCC-CCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCc
Q 002350 102 YDWFPLLNMSLFHPLEELQSLDLSV-NIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNR 180 (933)
Q Consensus 102 ~~~~~~~~~~~f~~l~~L~~LdLs~-n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 180 (933)
+.. .-+..|.++++|++|+|++ |.+.+.+| ..++++++|++|++++|.+++.+|..+.++++|++|++++|.
T Consensus 64 ~~~---~~~~~l~~l~~L~~L~L~~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 136 (313)
T 1ogq_A 64 KPY---PIPSSLANLPYLNFLYIGGINNLVGPIP----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136 (313)
T ss_dssp SCE---ECCGGGGGCTTCSEEEEEEETTEESCCC----GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CCc---ccChhHhCCCCCCeeeCCCCCcccccCC----hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc
Confidence 210 1235788899999999995 88887777 678889999999999999988888889999999999999999
Q ss_pred ccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCC-CCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCC
Q 002350 181 IEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLT-RLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 259 (933)
Q Consensus 181 i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 259 (933)
+++..| ..+..+++|++|++++|.+++.+|..+++++ +|++|++++|++++.+|..+..++ |++|++++|.+++..|
T Consensus 137 l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~ 214 (313)
T 1ogq_A 137 LSGTLP-PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214 (313)
T ss_dssp EESCCC-GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG
T ss_pred cCCcCC-hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC
Confidence 988777 5788899999999999999888888898888 899999999999888888888887 9999999998876554
Q ss_pred hhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhC
Q 002350 260 LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRN 339 (933)
Q Consensus 260 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 339 (933)
..+.++++|+.|++++| .+++.+|. +..+++|++|++++|++++.+|.++. .
T Consensus 215 -~~~~~l~~L~~L~L~~N-------------------------~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~-~ 266 (313)
T 1ogq_A 215 -VLFGSDKNTQKIHLAKN-------------------------SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT-Q 266 (313)
T ss_dssp -GGCCTTSCCSEEECCSS-------------------------EECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG-G
T ss_pred -HHHhcCCCCCEEECCCC-------------------------ceeeecCc-ccccCCCCEEECcCCcccCcCChHHh-c
Confidence 45566666665555554 44433333 44445555555555555555554443 4
Q ss_pred CCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCc
Q 002350 340 NPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 376 (933)
Q Consensus 340 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 376 (933)
+++|++|++++|.+++..+.. ..+++|+.+++++|.
T Consensus 267 l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 267 LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 555555555555555432221 445555555665554
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.3e-36 Score=344.57 Aligned_cols=346 Identities=18% Similarity=0.175 Sum_probs=256.8
Q ss_pred EEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCC
Q 002350 418 LLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 497 (933)
Q Consensus 418 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 497 (933)
.++.+++.++ .+|..+ .+.++.|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4444444444 344432 235566666666666655666666666777777777666666666667777777777777
Q ss_pred cCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCc
Q 002350 498 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIP 576 (933)
Q Consensus 498 ~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p 576 (933)
++++..+..+..++. |++|++++|++++..+..|..+++|+.|++++|++.+..+..+ .+++|++|++++|++++..+
T Consensus 91 ~l~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSN-LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCCSCCTTSSTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCCccCcccccCCCC-CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 766433334455555 7777777777776667777778888888888888877777666 78888888888888887777
Q ss_pred hhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhc
Q 002350 577 GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS 656 (933)
Q Consensus 577 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~ 656 (933)
..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+.+|.......+|+.|++++|++++..+..+.+
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--- 246 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH--- 246 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT---
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC---
Confidence 77888888888888888888777778888888888888888888777777777778999999998887422223322
Q ss_pred cccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccE
Q 002350 657 WRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTG 736 (933)
Q Consensus 657 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 736 (933)
+++|+.
T Consensus 247 --------------------------------------------------------------------------l~~L~~ 252 (477)
T 2id5_A 247 --------------------------------------------------------------------------LVYLRF 252 (477)
T ss_dssp --------------------------------------------------------------------------CTTCCE
T ss_pred --------------------------------------------------------------------------ccccCe
Confidence 346788
Q ss_pred EEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcC
Q 002350 737 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL 816 (933)
Q Consensus 737 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 816 (933)
|||++|.+++..+..+..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|+.|++++|++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 99999999888888888999999999999999998899999999999999999999987777888999999999999999
Q ss_pred cccCCCCCcCCccCcccccCCCCCCCccc
Q 002350 817 SGRTPDKGQFATFDESSYRGNPSLCAWLI 845 (933)
Q Consensus 817 ~g~~p~~~~~~~~~~~~~~gN~~lc~~~l 845 (933)
.+.++....+.......+.++...|..|.
T Consensus 333 ~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 333 ACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp ECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred cCccchHhHHhhhhccccCccCceeCCch
Confidence 88776432223333455777888887653
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3e-34 Score=330.28 Aligned_cols=324 Identities=26% Similarity=0.349 Sum_probs=198.9
Q ss_pred CCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeE
Q 002350 389 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 468 (933)
Q Consensus 389 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 468 (933)
+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 139 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL 139 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEE
Confidence 4444444444444443222 4444455555555554442 222 3444555555555555444322 4455555555
Q ss_pred EccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcC
Q 002350 469 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL 548 (933)
Q Consensus 469 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 548 (933)
++++|.+.+ ++ .+..+++|++|+++ |.+.+. + .+..++. |+.|++++|.+++. ..+..+++|+.|++++|++
T Consensus 140 ~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~-L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 140 ELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTT-LERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 211 (466)
T ss_dssp EEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred ECCCCccCC-Ch-hhccCCcccEeecC-CcccCc-h-hhccCCC-CCEEECcCCcCCCC--hhhccCCCCCEEEecCCcc
Confidence 555555543 22 24555555555554 233322 2 1444444 66666666665532 2355666666666666666
Q ss_pred ccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhh
Q 002350 549 SGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC 628 (933)
Q Consensus 549 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 628 (933)
.+..+ ...+++|++|++++|.+.+. ..+..+++|++|++++|++++..+ +..+++|++|++++|++++..+ +.
T Consensus 212 ~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~ 284 (466)
T 1o6v_A 212 SDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 284 (466)
T ss_dssp CCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GT
T ss_pred ccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--cc
Confidence 65544 22566677777777766643 356677778888888887775544 6777788888888888776443 77
Q ss_pred cCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhh
Q 002350 629 QLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAA 708 (933)
Q Consensus 629 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 708 (933)
.+++|+.|++++|++++..| +.
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~--~~-------------------------------------------------------- 306 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP--IS-------------------------------------------------------- 306 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG--GG--------------------------------------------------------
T ss_pred CCCccCeEEcCCCcccCchh--hc--------------------------------------------------------
Confidence 77888888888887765322 11
Q ss_pred chhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECc
Q 002350 709 IDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788 (933)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs 788 (933)
.+++|+.|+|++|++++..| ++.+++|+.|++++|++++. ..++++++|+.|+++
T Consensus 307 ---------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 307 ---------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAG 361 (466)
T ss_dssp ---------------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred ---------------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCC
Confidence 13467778888888876655 67788888888888888865 367888888888888
Q ss_pred CCeecccCCcCCcCCCCCCeEEccCCcCccc
Q 002350 789 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGR 819 (933)
Q Consensus 789 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 819 (933)
+|++++.+| +..+++|+.|++++|++++.
T Consensus 362 ~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 362 HNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp SSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 888887776 77888888888888888773
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.3e-34 Score=326.59 Aligned_cols=348 Identities=25% Similarity=0.339 Sum_probs=242.7
Q ss_pred CCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEE
Q 002350 341 PKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLD 420 (933)
Q Consensus 341 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 420 (933)
++++.|++.++.+..+. .+..+++|++|++++|.+++ +|. + ..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 46 ~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~-~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTD-ITP-L-KNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC-CGG-G-TTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred ccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCC-chh-h-hccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 44555555555554442 24455556666666665552 332 2 246666666666666664433 66666666666
Q ss_pred cCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCC
Q 002350 421 LSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS 500 (933)
Q Consensus 421 Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 500 (933)
+++|.+.+ ++. +..+++|++|++++|.+.+. ..+..+++|++|+++ |.+.+.. .+..+++|++|++++|.++
T Consensus 119 L~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 119 LFNNQITD-IDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp CCSSCCCC-CGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCC-ChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 66666653 332 45666666666666666653 235666777777775 3443222 2667777777777777776
Q ss_pred CCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhc
Q 002350 501 GHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELF 580 (933)
Q Consensus 501 ~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 580 (933)
+ ++ .+..++. |+.|++++|.+++..| +..+++|+.|++++|++.+. +....+++|++|++++|.+.+..+ +.
T Consensus 191 ~-~~-~l~~l~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 191 D-IS-VLAKLTN-LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp C-CG-GGGGCTT-CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred C-Ch-hhccCCC-CCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hh
Confidence 3 33 3555555 7888888887776554 66677888888888887653 333377888888888888876644 77
Q ss_pred cCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccC
Q 002350 581 RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVG 660 (933)
Q Consensus 581 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~ 660 (933)
.+++|+.|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++..| +..
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~------- 329 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSS------- 329 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGG-------
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hcc-------
Confidence 88899999999999886544 7888999999999999987544 7889999999999999886544 221
Q ss_pred CCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcC
Q 002350 661 SDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLS 740 (933)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs 740 (933)
+++|+.|+++
T Consensus 330 ----------------------------------------------------------------------l~~L~~L~l~ 339 (466)
T 1o6v_A 330 ----------------------------------------------------------------------LTKLQRLFFY 339 (466)
T ss_dssp ----------------------------------------------------------------------CTTCCEEECC
T ss_pred ----------------------------------------------------------------------CccCCEeECC
Confidence 3467889999
Q ss_pred CCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcC
Q 002350 741 CNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ 799 (933)
Q Consensus 741 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~ 799 (933)
+|++++. ..+..+++|+.|++++|++++.+| +.++++|+.|++++|++++ +|..
T Consensus 340 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~~ 393 (466)
T 1o6v_A 340 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVN 393 (466)
T ss_dssp SSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCBC
T ss_pred CCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cchh
Confidence 9999864 468899999999999999998887 8999999999999999996 3443
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.4e-35 Score=335.15 Aligned_cols=354 Identities=19% Similarity=0.169 Sum_probs=275.2
Q ss_pred CCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCE
Q 002350 339 NNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSL 418 (933)
Q Consensus 339 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 418 (933)
.+++|++|++++|.+++++ .+..+++|++|++++|++++ +| + ..+++|++|++++|.+++. + ++.+++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~-~~--~-~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT-LD--L-SQNTNLTYLACDSNKLTNL-D--VTPLTKLTY 110 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC-CC--C-TTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred HcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCe-Ec--c-ccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence 6788999999999888773 57788888899999888885 44 3 3478888888888888864 3 778888888
Q ss_pred EEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCc
Q 002350 419 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNM 498 (933)
Q Consensus 419 L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 498 (933)
|++++|++++ ++ +..+++|++|++++|++++. .+..+++|++|++++|...+.+ .+..+++|++|++++|+
T Consensus 111 L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 111 LNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred EECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 8888888874 44 56788888888888888874 2667888888888888655454 46778888888888888
Q ss_pred CCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchh
Q 002350 499 LSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGE 578 (933)
Q Consensus 499 l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 578 (933)
+++ +| +..++. |+.|++++|++++. .+..+++|+.|++++|++++ +| ...+++|++|++++|++++..
T Consensus 182 l~~-l~--l~~l~~-L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~--- 249 (457)
T 3bz5_A 182 ITE-LD--VSQNKL-LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELD--- 249 (457)
T ss_dssp CCC-CC--CTTCTT-CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCC---
T ss_pred cce-ec--cccCCC-CCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcC---
Confidence 875 44 556655 88888888888864 37778888888888888877 34 337788888888888887753
Q ss_pred hccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccc
Q 002350 579 LFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 658 (933)
Q Consensus 579 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~ 658 (933)
+..+++|+.|++++| +|+.|++++|++.+.+| +..+++|+.|++++|++.|.+|.....++.+.
T Consensus 250 ~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 345677888887765 46678889998888877 56789999999999998888875433222110
Q ss_pred cCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEE
Q 002350 659 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLD 738 (933)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 738 (933)
....++|+.|+
T Consensus 314 ---------------------------------------------------------------------l~~~~~L~~L~ 324 (457)
T 3bz5_A 314 ---------------------------------------------------------------------LSQNPKLVYLY 324 (457)
T ss_dssp ---------------------------------------------------------------------CTTCTTCCEEE
T ss_pred ---------------------------------------------------------------------hhhcccCCEEE
Confidence 02245788999
Q ss_pred cCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcc
Q 002350 739 LSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 818 (933)
Q Consensus 739 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 818 (933)
+++|+++| +| ++.+++|+.|++++|++++ ++.|+.|++++|+++|. ..+..|..+++++|+++|
T Consensus 325 L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g 388 (457)
T 3bz5_A 325 LNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTI 388 (457)
T ss_dssp CTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEE
T ss_pred CCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEE
Confidence 99999998 44 8999999999999999996 24677788999999987 345678889999999999
Q ss_pred cCCCC
Q 002350 819 RTPDK 823 (933)
Q Consensus 819 ~~p~~ 823 (933)
.+|..
T Consensus 389 ~ip~~ 393 (457)
T 3bz5_A 389 AVSPD 393 (457)
T ss_dssp ECCTT
T ss_pred EcChh
Confidence 99964
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-34 Score=330.97 Aligned_cols=357 Identities=19% Similarity=0.187 Sum_probs=207.0
Q ss_pred CCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccE
Q 002350 290 PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHH 369 (933)
Q Consensus 290 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 369 (933)
.+++|++|++++|.+++. | .+..+++|++|++++|++++ +| +..+++|++|++++|.++++ ++..+++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~ 110 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL---DVTPLTKLTY 110 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC---CCTTCTTCCE
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee---ecCCCCcCCE
Confidence 345555555555555542 3 35555555555555555553 23 23455555555555555553 2445555555
Q ss_pred EEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCC
Q 002350 370 LDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 449 (933)
Q Consensus 370 L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 449 (933)
|++++|++++ +| + ..+++|++|++++|.+++. + ++.+++|++|++++|...+.++ +..+++|++|++++|
T Consensus 111 L~L~~N~l~~-l~--~-~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 111 LNCDTNKLTK-LD--V-SQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFN 180 (457)
T ss_dssp EECCSSCCSC-CC--C-TTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSS
T ss_pred EECCCCcCCe-ec--C-CCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCC
Confidence 5555555553 33 2 2355555555555555542 1 4455555555555554333332 234555555555555
Q ss_pred cCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcc
Q 002350 450 NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP 529 (933)
Q Consensus 450 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~ 529 (933)
++++. + +..+++|+.|++++|++++. .+..+++|++|++++|++++ +| +..++. |+.|++++|++++..
T Consensus 181 ~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~-L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 181 KITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQ-LTYFDCSVNPLTELD- 249 (457)
T ss_dssp CCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTT-CSEEECCSSCCSCCC-
T ss_pred cccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCC-CCEEEeeCCcCCCcC-
Confidence 55542 1 44455555555555555532 24445555555555555553 33 334433 555555555555432
Q ss_pred hhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCc
Q 002350 530 VQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 609 (933)
Q Consensus 530 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 609 (933)
+..+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|. ..++|
T Consensus 250 --~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L 309 (457)
T 3bz5_A 250 --VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGI 309 (457)
T ss_dssp --CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCC
T ss_pred --HHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcc
Confidence 233444555554443 34556666666655555 34566777777777766666653 23445
Q ss_pred cEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCC
Q 002350 610 RFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRS 689 (933)
Q Consensus 610 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (933)
+.|++++| ++|+.|++++|+++|. | +++
T Consensus 310 ~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~------------------------------------ 337 (457)
T 3bz5_A 310 TELDLSQN-------------PKLVYLYLNNTELTEL-D--VSH------------------------------------ 337 (457)
T ss_dssp SCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTT------------------------------------
T ss_pred eEechhhc-------------ccCCEEECCCCccccc-c--ccc------------------------------------
Confidence 55544444 6899999999999873 2 222
Q ss_pred CccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccc
Q 002350 690 SNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLS 769 (933)
Q Consensus 690 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 769 (933)
+++|+.||+++|+++| ++.|..|++++|.++
T Consensus 338 -----------------------------------------l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~ 368 (457)
T 3bz5_A 338 -----------------------------------------NTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFE 368 (457)
T ss_dssp -----------------------------------------CTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEE
T ss_pred -----------------------------------------CCcCcEEECCCCCCCC--------ccccccccccCCcEE
Confidence 3468889999999996 246777899999999
Q ss_pred cccchhccCCCCCCEEECcCCeecccCCcCCcC
Q 002350 770 GSIPESFSNLKMIESLDISYNKLTGQIPPQLTA 802 (933)
Q Consensus 770 ~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~ 802 (933)
|. +++..|+.+|+++|+++|.||..+..
T Consensus 369 g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 369 AE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp EE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred ec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 86 35677899999999999999987654
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.4e-34 Score=314.11 Aligned_cols=257 Identities=34% Similarity=0.549 Sum_probs=233.8
Q ss_pred ccceeecCCCcCCC--CcchhccCCCCCCEEEccC-CcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEE
Q 002350 513 ELEILSMSKNHLEG--NVPVQLNNLERLRILDISE-NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTL 588 (933)
Q Consensus 513 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 588 (933)
+++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..+ .+++|++|++++|.+++.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 37888888888887 7888888888899999984 88888888777 88999999999999988899999999999999
Q ss_pred eCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCC-CCCEEEccCCcCCCCCCchhhhhhccccCCCCccCC
Q 002350 589 NLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ-KLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNG 667 (933)
Q Consensus 589 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~ 667 (933)
++++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|+++|.+|..+..+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l------------- 197 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL------------- 197 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-------------
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-------------
Confidence 9999999999999999999999999999999999999999998 99999999999998888776542
Q ss_pred CCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCC
Q 002350 668 SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE 747 (933)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ 747 (933)
.|+.||+++|++++.
T Consensus 198 -----------------------------------------------------------------~L~~L~Ls~N~l~~~ 212 (313)
T 1ogq_A 198 -----------------------------------------------------------------NLAFVDLSRNMLEGD 212 (313)
T ss_dssp -----------------------------------------------------------------CCSEEECCSSEEEEC
T ss_pred -----------------------------------------------------------------cccEEECcCCcccCc
Confidence 267799999999999
Q ss_pred CChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCCCcCC
Q 002350 748 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFA 827 (933)
Q Consensus 748 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~ 827 (933)
+|..++.+++|+.|+|++|++++.+|. +..+++|++|||++|++++.+|..+..+++|++|++++|+++|.+|..+++.
T Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~ 291 (313)
T 1ogq_A 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGG
T ss_pred CCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCcccc
Confidence 999999999999999999999988777 8999999999999999999999999999999999999999999999998899
Q ss_pred ccCcccccCCCCCCCccccCCC
Q 002350 828 TFDESSYRGNPSLCAWLIQQKY 849 (933)
Q Consensus 828 ~~~~~~~~gN~~lc~~~l~~~~ 849 (933)
.+....+.||+++||.|+. .|
T Consensus 292 ~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 292 RFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GSCGGGTCSSSEEESTTSS-CC
T ss_pred ccChHHhcCCCCccCCCCC-CC
Confidence 9999999999999998764 35
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.8e-34 Score=328.40 Aligned_cols=347 Identities=19% Similarity=0.167 Sum_probs=212.0
Q ss_pred cEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECc
Q 002350 368 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 447 (933)
Q Consensus 368 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 447 (933)
+.++.+++.++ .+|..+ .+++++|++++|.+++..+..|..+++|++|+|++|.+.
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-------------------- 69 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-------------------- 69 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC--------------------
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC--------------------
Confidence 35556666555 555543 345566666666655544555555555555555555554
Q ss_pred CCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCC
Q 002350 448 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN 527 (933)
Q Consensus 448 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~ 527 (933)
+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|++.+..|..+..++. |+.|++++|.+++.
T Consensus 70 -----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 70 -----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVYI 143 (477)
T ss_dssp -----EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEEECCTTCCEE
T ss_pred -----EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc-CCEEECCCCcccee
Confidence 433444444444444444444444333333444455555555555554444444444444 55555555555555
Q ss_pred cchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcC
Q 002350 528 VPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH 606 (933)
Q Consensus 528 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 606 (933)
.+..|.++++|+.|++++|++++..+..+ .+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.+|......
T Consensus 144 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 223 (477)
T 2id5_A 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223 (477)
T ss_dssp CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC
Confidence 55556666666666666666655544444 56666666666666666666666777777777777777666666666555
Q ss_pred CCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCC
Q 002350 607 SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGN 686 (933)
Q Consensus 607 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (933)
.+|++|++++|++++..+..+..+++|+.|++++|++++..+..+.+
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------------------------------- 270 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE--------------------------------- 270 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT---------------------------------
T ss_pred ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc---------------------------------
Confidence 67777777777777555566777788888888888776444433322
Q ss_pred CCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeecccc
Q 002350 687 NRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNN 766 (933)
Q Consensus 687 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 766 (933)
+++|+.|+|++|++++..|..+..+++|+.|+|++|
T Consensus 271 --------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 271 --------------------------------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp --------------------------------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred --------------------------------------------cccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 345677888888888777888888888888888888
Q ss_pred ccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCC
Q 002350 767 SLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 822 (933)
Q Consensus 767 ~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~ 822 (933)
++++..+..|.++++|++|+|++|.+...-+.. .-......+++..+...+..|.
T Consensus 307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 307 QLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred cCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCch
Confidence 888877778888888888888888887542211 1112233345556666665553
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.5e-33 Score=310.36 Aligned_cols=333 Identities=21% Similarity=0.234 Sum_probs=242.6
Q ss_pred CCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEE
Q 002350 413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVL 492 (933)
Q Consensus 413 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 492 (933)
+++++.|++++|.+. .+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 466777777777765 5666666677777777777777776666677777777777777777776666677777778888
Q ss_pred EccCCcCCCCChhh-HhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcC
Q 002350 493 DISNNMLSGHIPHW-MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL 571 (933)
Q Consensus 493 ~Ls~n~l~~~~p~~-l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l 571 (933)
++++|+++ .+|.. +..++. |++|++++|++++..+..+..+++|+.|++++|++++.. ...+++|+.|++++|.+
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTT-CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCC
T ss_pred ECCCCccC-cCCHHHhcCCCC-CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccc
Confidence 88888777 44443 355555 888888888877777777778888888888888776542 22567788888888877
Q ss_pred cccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchh
Q 002350 572 NGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 651 (933)
Q Consensus 572 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~ 651 (933)
.+. ...++|+.|++++|.+... |... .++|++|++++|++++. ..+..+++|+.|++++|.+++..|..+
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCCEE-ECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccc-----CCCCcceEEECCCCeeeec-cccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 643 3345788888888888743 4332 46788888888888753 567888888888888888876656554
Q ss_pred hhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCC
Q 002350 652 ANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNV 731 (933)
Q Consensus 652 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 731 (933)
.. +
T Consensus 269 ~~-----------------------------------------------------------------------------l 271 (390)
T 3o6n_A 269 VK-----------------------------------------------------------------------------M 271 (390)
T ss_dssp TT-----------------------------------------------------------------------------C
T ss_pred cc-----------------------------------------------------------------------------c
Confidence 33 2
Q ss_pred CcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEc
Q 002350 732 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 811 (933)
Q Consensus 732 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 811 (933)
++|+.|+|++|++++ +|..++.+++|++|+|++|+++ .+|..++.+++|++|+|++|+++.. | +..++.|+.|++
T Consensus 272 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l 346 (390)
T 3o6n_A 272 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL 346 (390)
T ss_dssp SSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred ccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEc
Confidence 467778888888874 5666777888999999999988 5677788889999999999998854 3 677888999999
Q ss_pred cCCcCcccCCCCCcCCccCcccccCCCCCCCc
Q 002350 812 SYNNLSGRTPDKGQFATFDESSYRGNPSLCAW 843 (933)
Q Consensus 812 s~N~l~g~~p~~~~~~~~~~~~~~gN~~lc~~ 843 (933)
++|++++.... ..+..+....+.+++..|.+
T Consensus 347 ~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 347 SHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred CCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence 99999875432 23444555556677766754
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-32 Score=326.78 Aligned_cols=335 Identities=20% Similarity=0.217 Sum_probs=249.3
Q ss_pred CCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEE
Q 002350 413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVL 492 (933)
Q Consensus 413 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 492 (933)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456666777776665 5666666677777777777777777666677777777777777777777666667777777777
Q ss_pred EccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCc
Q 002350 493 DISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALN 572 (933)
Q Consensus 493 ~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~ 572 (933)
++++|.+++..+..+..++. |++|++++|.+++..|..|..+++|+.|++++|++++... ..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG--GGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCC-CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh--hhhhhhhhhhcccCccc
Confidence 77777777433333455555 7778888887777777777778888888888887776432 24677888888888776
Q ss_pred ccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhh
Q 002350 573 GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFA 652 (933)
Q Consensus 573 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~ 652 (933)
+. ...++|+.|++++|.+... |..+ .++|+.|+|++|.+++ +..+..+++|+.|++++|.+++.+|..++
T Consensus 206 ~l-----~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 TL-----AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp EE-----ECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cc-----cCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 43 3445788888888888743 3322 2578888888888886 36788888888999988888877676554
Q ss_pred hhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCC
Q 002350 653 NVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVN 732 (933)
Q Consensus 653 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 732 (933)
. ++
T Consensus 276 ~-----------------------------------------------------------------------------l~ 278 (597)
T 3oja_B 276 K-----------------------------------------------------------------------------MQ 278 (597)
T ss_dssp T-----------------------------------------------------------------------------CS
T ss_pred C-----------------------------------------------------------------------------cc
Confidence 3 23
Q ss_pred cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350 733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 812 (933)
Q Consensus 733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 812 (933)
+|+.|+|++|.+++ +|..++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|.+++. | +..++.|++|+++
T Consensus 279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~ 353 (597)
T 3oja_B 279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLS 353 (597)
T ss_dssp SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECC
T ss_pred CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEee
Confidence 67778999998885 5777778889999999999998 5777888999999999999999855 3 6778899999999
Q ss_pred CCcCcccCCCCCcCCccCcccccCCCCCCCcc
Q 002350 813 YNNLSGRTPDKGQFATFDESSYRGNPSLCAWL 844 (933)
Q Consensus 813 ~N~l~g~~p~~~~~~~~~~~~~~gN~~lc~~~ 844 (933)
+|+++|.++ ...+..+....+.+++..|+.+
T Consensus 354 ~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 354 HNDWDCNSL-RALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp SSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCCChhH-HHHHHHHhhhccccccccCCcc
Confidence 999998753 2345566667788999999753
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=4.7e-31 Score=291.69 Aligned_cols=304 Identities=23% Similarity=0.344 Sum_probs=188.6
Q ss_pred CCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeE
Q 002350 389 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 468 (933)
Q Consensus 389 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 468 (933)
+++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++. +.+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 5666666666666553 22 2555566666666666555 2332 34555555555555555432 234444455555
Q ss_pred EccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcC
Q 002350 469 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL 548 (933)
Q Consensus 469 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 548 (933)
++++|.+++. +. +..+++ |+.|++++|......+ .+..+++|+.|++++|++
T Consensus 116 ~l~~n~i~~~-~~-~~~l~~-------------------------L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 116 YLNEDNISDI-SP-LANLTK-------------------------MYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV 167 (347)
T ss_dssp ECTTSCCCCC-GG-GTTCTT-------------------------CCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred ECcCCcccCc-hh-hccCCc-------------------------eeEEECCCCCCccccc-chhhCCCCcEEEecCCCc
Confidence 5555544422 11 344444 5555555553332222 255556666666666655
Q ss_pred ccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhh
Q 002350 549 SGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC 628 (933)
Q Consensus 549 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 628 (933)
.+..+ ...+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +.
T Consensus 168 ~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~ 240 (347)
T 4fmz_A 168 KDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240 (347)
T ss_dssp CCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred CCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence 54333 2256666666666666654322 6677777777777777775433 6777778888888887775433 77
Q ss_pred cCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhh
Q 002350 629 QLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAA 708 (933)
Q Consensus 629 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 708 (933)
.+++|+.|++++|.+++. + .+
T Consensus 241 ~l~~L~~L~l~~n~l~~~-~-~~--------------------------------------------------------- 261 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI-N-AV--------------------------------------------------------- 261 (347)
T ss_dssp TCTTCCEEECCSSCCCCC-G-GG---------------------------------------------------------
T ss_pred cCCCCCEEECCCCccCCC-h-hH---------------------------------------------------------
Confidence 778888888888877642 1 11
Q ss_pred chhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECc
Q 002350 709 IDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788 (933)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs 788 (933)
..+++|+.|++++|++++. +.+..+++|+.|++++|.+++..|..|+++++|++|+++
T Consensus 262 --------------------~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 262 --------------------KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp --------------------TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred --------------------hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 1234677788888888753 357788888888888888888888888888888888888
Q ss_pred CCeecccCCcCCcCCCCCCeEEccCCcCc
Q 002350 789 YNKLTGQIPPQLTALNFLSIFNVSYNNLS 817 (933)
Q Consensus 789 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 817 (933)
+|++++..| +..++.|++|++++|+++
T Consensus 320 ~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 320 QNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCccccccC--hhhhhccceeehhhhccc
Confidence 888887665 778888888888888774
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=1.7e-31 Score=300.09 Aligned_cols=312 Identities=22% Similarity=0.213 Sum_probs=245.0
Q ss_pred CCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCC
Q 002350 115 PLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELK 194 (933)
Q Consensus 115 ~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~ 194 (933)
.++++++|++++|.+....+ ..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+ ..+.+++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEESEECT----HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT
T ss_pred ccCCceEEEecCCchhhCCh----hHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-HHhcCCC
Confidence 46788888888887765333 456778888999999888887777788888899999999888887665 5688888
Q ss_pred CCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEec
Q 002350 195 NLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLL 274 (933)
Q Consensus 195 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 274 (933)
+|++|++++|.++...+..|+++++|++|++++|.+.+..|..+.++++|++|++++|.+++. + +..+++|+.+++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~---~~~l~~L~~L~l 193 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANV 193 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C---GGGCTTCSEEEC
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c---cccccccceeec
Confidence 899999998888875555578888899999998888887778888888899999988888753 2 567788888888
Q ss_pred ccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCc
Q 002350 275 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS 354 (933)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 354 (933)
+++.... +....+|++|++++|.+... |. ...++|+.|++++|.+++. + + +..+++|++|++++|.++
T Consensus 194 ~~n~l~~------~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-~-~-l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 194 SYNLLST------LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-A-W-LLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp CSSCCSE------EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-G-G-GGGCTTCSEEECCSSCCC
T ss_pred ccccccc------cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-H-H-HcCCCCccEEECCCCcCC
Confidence 8775432 22345788899999888754 22 2246889999999988753 3 3 347889999999999988
Q ss_pred CcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhh
Q 002350 355 GILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV 434 (933)
Q Consensus 355 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 434 (933)
+..+..+..+++|++|++++|+++ .+|.... .+++|++|++++|.+. .+|..+..+++|+.|++++|+++ .++
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~--- 334 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--- 334 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSSCCC-EEECSSS-CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC---
T ss_pred CcChhHccccccCCEEECCCCcCc-ccCcccC-CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC---
Confidence 876667788889999999999887 4555443 4789999999999888 56777788889999999999987 344
Q ss_pred hcCCCCCCEEECcCCcCCCc
Q 002350 435 VTGCFSLELLDLSNNNFEGQ 454 (933)
Q Consensus 435 ~~~l~~L~~L~Ls~n~l~~~ 454 (933)
+..+++|++|++++|.+...
T Consensus 335 ~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 335 LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCTTCCCSEEECCSSCEEHH
T ss_pred chhhccCCEEEcCCCCccch
Confidence 45778899999999988754
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=2.3e-31 Score=315.66 Aligned_cols=313 Identities=22% Similarity=0.211 Sum_probs=234.5
Q ss_pred CCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCC
Q 002350 115 PLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELK 194 (933)
Q Consensus 115 ~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~ 194 (933)
.+.+++.|++++|.+....+ ..+.++++|++|+|++|.+++..+..|+.+++|++|+|++|.+++..+ ..++.++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCEESEECT----HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT
T ss_pred cCCCceEEEeeCCCCCCcCH----HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-HHHcCCC
Confidence 35677888888877765433 456777888888888888887777788888888888888888877655 5677888
Q ss_pred CCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEec
Q 002350 195 NLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLL 274 (933)
Q Consensus 195 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 274 (933)
+|++|+|++|.+++..+..|+++++|++|+|++|.+++..|..|+++++|++|++++|.+++. + +..+++|+.|++
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~---~~~l~~L~~L~l 199 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANV 199 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C---GGGCTTCSEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C---hhhhhhhhhhhc
Confidence 888888888888876556677888888888888888877777788888888888888887753 2 556777888888
Q ss_pred ccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCc
Q 002350 275 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS 354 (933)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 354 (933)
++|.... +.....|+.|++++|.+....+.. .++|+.|++++|.+++. .++ ..+++|+.|++++|.++
T Consensus 200 ~~n~l~~------l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l-~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 200 SYNLLST------LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWL-LNYPGLVEVDLSYNELE 267 (597)
T ss_dssp CSSCCSE------EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGG-GGCTTCSEEECCSSCCC
T ss_pred ccCcccc------ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhh-ccCCCCCEEECCCCccC
Confidence 7765432 223456888888888877433222 25788888888888753 333 47888888888888888
Q ss_pred CcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhh
Q 002350 355 GILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV 434 (933)
Q Consensus 355 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 434 (933)
+..+..+..+++|++|++++|.+++ +|.... .+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+ ++
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~-~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--- 340 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--- 340 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCE-EECSSS-CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC---
T ss_pred CCCHHHhcCccCCCEEECCCCCCCC-CCcccc-cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC---
Confidence 8766667788888888888888874 555443 4788888888888888 577777888888999999888873 33
Q ss_pred hcCCCCCCEEECcCCcCCCcC
Q 002350 435 VTGCFSLELLDLSNNNFEGQF 455 (933)
Q Consensus 435 ~~~l~~L~~L~Ls~n~l~~~~ 455 (933)
+..+++|+.|++++|.+.+..
T Consensus 341 ~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 341 LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CCTTCCCSEEECCSSCEEHHH
T ss_pred hhhcCCCCEEEeeCCCCCChh
Confidence 456788999999999887543
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.5e-30 Score=284.69 Aligned_cols=307 Identities=22% Similarity=0.282 Sum_probs=228.1
Q ss_pred hhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCC
Q 002350 312 LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQK 391 (933)
Q Consensus 312 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~ 391 (933)
+..+++|++|++++|.+. .+|. +..+++|++|++++|.++++.. +..+++|++|++++|.++ .++ .+ ..+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~-~~-~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-AL-QNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GG-TTCTT
T ss_pred chhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch-HH-cCCCc
Confidence 345566777777777665 3443 2356777777777777766533 666777777777777776 343 23 34777
Q ss_pred ccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEcc
Q 002350 392 LMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFE 471 (933)
Q Consensus 392 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 471 (933)
|++|++++|.+.+..+ +..+++|+.|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred CCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence 7778877777764332 67777888888888765544443 5677788888888887776544 6778888888888
Q ss_pred CccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccc
Q 002350 472 NNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP 551 (933)
Q Consensus 472 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 551 (933)
+|.+.+..+ +..+++|+.|++++|.+.+..+ +..++. |+.|++++|++++..+ +..+++|+.|++++|++++.
T Consensus 186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR-LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTT-CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCccccccc--ccCCCccceeecccCCCCCCch--hhcCCc-CCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC
Confidence 888874333 6778888888888888875433 556655 8888888888885444 78888999999999988764
Q ss_pred cCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCC
Q 002350 552 IASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ 631 (933)
Q Consensus 552 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 631 (933)
+....+++|++|++++|++++. ..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..| +..++
T Consensus 259 -~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 259 -NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred -hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence 4334788999999999988865 468889999999999999998888999999999999999999997666 88899
Q ss_pred CCCEEEccCCcCC
Q 002350 632 KLAMMDLSRNKFS 644 (933)
Q Consensus 632 ~L~~L~Ls~N~l~ 644 (933)
+|+.|++++|+++
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 9999999999875
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.4e-34 Score=327.42 Aligned_cols=279 Identities=20% Similarity=0.227 Sum_probs=169.0
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCC----CccccccCCCCCCEEEcCCCcCCCCcchhhhcCCC-
Q 002350 365 DFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG----NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF- 439 (933)
Q Consensus 365 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~- 439 (933)
+.|++|++++|+++......++..+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4567777777777644444444567888888888888764 24556677788888888888876544445555555
Q ss_pred ---CCCEEECcCCcCCC----cCchhhcccCcCCeEEccCccccccccccc-----cCCCCCCEEEccCCcCCCCC----
Q 002350 440 ---SLELLDLSNNNFEG----QFFSEYMNLTRLRHLYFENNNFSGKIKDGL-----LSSTSLQVLDISNNMLSGHI---- 503 (933)
Q Consensus 440 ---~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~---- 503 (933)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888887774 346666777777777777777764433322 22456777777777776533
Q ss_pred hhhHhhhccccceeecCCCcCCCCcchhcc-----CCCCCCEEEccCCcCccc----cCccc-cCCCCceEEeecCcCcc
Q 002350 504 PHWMGNFSSELEILSMSKNHLEGNVPVQLN-----NLERLRILDISENRLSGP----IASSL-NLSSVEHLSLQKNALNG 573 (933)
Q Consensus 504 p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~----~~~~~-~l~~L~~L~L~~n~l~~ 573 (933)
+..+..++. |++|++++|.+++..+..+. ..++|+.|++++|++++. ++..+ .+++|++|++++|.+.+
T Consensus 163 ~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 163 ASVLRAKPD-FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHCTT-CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHhhCCC-CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 333444444 77777777776544333332 244677777777766543 23333 45666666666666554
Q ss_pred cC-----chhhccCCCccEEeCcCCcCccc----CchhhhcCCCccEEEcCCCcCCCCCchhhhcC-----CCCCEEEcc
Q 002350 574 LI-----PGELFRSCKLVTLNLRDNTFSGR----IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL-----QKLAMMDLS 639 (933)
Q Consensus 574 ~~-----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~Ls 639 (933)
.. +..+..+++|++|++++|++++. ++..+..+++|++|++++|++++..+..+... ++|+.|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 32 11222356666666666666543 45555556666666666666654333333322 466666666
Q ss_pred CCcCC
Q 002350 640 RNKFS 644 (933)
Q Consensus 640 ~N~l~ 644 (933)
+|.++
T Consensus 322 ~n~l~ 326 (461)
T 1z7x_W 322 SCSFT 326 (461)
T ss_dssp TSCCB
T ss_pred CCCCc
Confidence 66655
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.4e-29 Score=277.85 Aligned_cols=287 Identities=20% Similarity=0.262 Sum_probs=168.7
Q ss_pred CCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEc
Q 002350 415 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 494 (933)
Q Consensus 415 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 494 (933)
+++.++++++.+. .+|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4666666666665 555543 246777777777777666667777777777777777777666777777777888888
Q ss_pred cCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCcc--ccCccc-cCCCCceEEeecCcC
Q 002350 495 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG--PIASSL-NLSSVEHLSLQKNAL 571 (933)
Q Consensus 495 s~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~-~l~~L~~L~L~~n~l 571 (933)
++|+++ .+|..+. + +|++|++++|++++..+..+.++++|+.|++++|++.. ..+..+ .+ +|++|++++|++
T Consensus 110 ~~n~l~-~l~~~~~--~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--S-SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC--T-TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc--c-cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 877776 5555443 2 37777777777776666667777777777777777642 333333 22 555555555555
Q ss_pred cccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchh
Q 002350 572 NGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 651 (933)
Q Consensus 572 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~ 651 (933)
++ +|. .+. ++|++|++++|++++..+..+..+++|+.|++++|++++..|..+
T Consensus 185 ~~-l~~------------------------~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 185 TG-IPK------------------------DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp SS-CCS------------------------SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred Cc-cCc------------------------ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh
Confidence 43 222 221 344444455555444444445555555555555555544333322
Q ss_pred hhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCC
Q 002350 652 ANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNV 731 (933)
Q Consensus 652 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 731 (933)
.. +
T Consensus 238 ~~-----------------------------------------------------------------------------l 240 (332)
T 2ft3_A 238 SF-----------------------------------------------------------------------------L 240 (332)
T ss_dssp GG-----------------------------------------------------------------------------C
T ss_pred hC-----------------------------------------------------------------------------C
Confidence 21 1
Q ss_pred CcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCC------CCCCEEECcCCeec--ccCCcCCcCC
Q 002350 732 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNL------KMIESLDISYNKLT--GQIPPQLTAL 803 (933)
Q Consensus 732 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~LdLs~N~l~--~~ip~~l~~l 803 (933)
++|+.|||++|+++ .+|..++.+++|+.|++++|++++..+..|... .+|+.|++++|.+. +..|..+..+
T Consensus 241 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence 23444555555555 455555566666666666666665555555442 45666666666665 4555666666
Q ss_pred CCCCeEEccCCc
Q 002350 804 NFLSIFNVSYNN 815 (933)
Q Consensus 804 ~~L~~L~ls~N~ 815 (933)
+.|+.+++++|+
T Consensus 320 ~~L~~l~l~~n~ 331 (332)
T 2ft3_A 320 TDRLAIQFGNYK 331 (332)
T ss_dssp CCSTTEEC----
T ss_pred chhhhhhccccc
Confidence 666666666663
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.1e-29 Score=273.82 Aligned_cols=270 Identities=23% Similarity=0.303 Sum_probs=133.2
Q ss_pred CCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeec
Q 002350 440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSM 519 (933)
Q Consensus 440 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L 519 (933)
.+++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|+++ .+|..+. ++|++|++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l 128 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELRV 128 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEEC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEEC
Confidence 4455555555555444444555555555555555555544555555556666666666554 3443322 22666666
Q ss_pred CCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccC
Q 002350 520 SKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRI 599 (933)
Q Consensus 520 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 599 (933)
++|++++..+..+.++++|+.|++++|++... +..+..+..+++|++|++++|+++. +
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~~~~~~~l~~L~~L~l~~n~l~~-l 186 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GIENGAFQGMKKLSYIRIADTNITT-I 186 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GBCTTGGGGCTTCCEEECCSSCCCS-C
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCcc---------------------CcChhhccCCCCcCEEECCCCcccc-C
Confidence 66666655555566666666666666655320 1222333333444444444444431 2
Q ss_pred chhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchh
Q 002350 600 PHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEI 679 (933)
Q Consensus 600 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 679 (933)
|..+. ++|++|++++|++++..|..+..+++|+.|++++|++++..|..+..
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------------------------- 238 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN-------------------------- 238 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG--------------------------
T ss_pred Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC--------------------------
Confidence 22221 34444444444444444444444444555555544444332222211
Q ss_pred hcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccC
Q 002350 680 EFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAIL 759 (933)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 759 (933)
+++|+.|+|++|+++ .+|..+..+++|+
T Consensus 239 ---------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~ 266 (330)
T 1xku_A 239 ---------------------------------------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQ 266 (330)
T ss_dssp ---------------------------------------------------STTCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred ---------------------------------------------------CCCCCEEECCCCcCc-cCChhhccCCCcC
Confidence 123444555555554 4555555555555
Q ss_pred eeeccccccccccchhccC------CCCCCEEECcCCeecc--cCCcCCcCCCCCCeEEccCCc
Q 002350 760 ALNLSNNSLSGSIPESFSN------LKMIESLDISYNKLTG--QIPPQLTALNFLSIFNVSYNN 815 (933)
Q Consensus 760 ~L~Ls~N~l~~~~p~~~~~------l~~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~ls~N~ 815 (933)
+|++++|++++..+..|.. ...|+.|++++|.+.. ..|..+..+..++.+++++|+
T Consensus 267 ~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred EEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 5555555555544444432 2556666666666642 445556666666666666663
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=5.8e-32 Score=311.59 Aligned_cols=344 Identities=19% Similarity=0.104 Sum_probs=243.2
Q ss_pred CchhhhCCCCCCEEEccCCCCcccchhHHHhCCC----CCCEEEcCCCCCcCcC----cCCcccCCCccEEEccCCcCCC
Q 002350 308 YPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNP----KLEVLLLKNNSFSGIL----QLPKAKHDFLHHLDISCNNFRG 379 (933)
Q Consensus 308 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~----~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~ 379 (933)
++..+..+++|++|++++|.+.+..+..++..++ +|++|++++|.++... ...+..+++|++|++++|.+++
T Consensus 48 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 3456667777888888887777555555555555 5888888888777432 2335577788888888888765
Q ss_pred CCChhhhhc----CCCccEEEccCCCCCCCc----cccccCCCCCCEEEcCCCcCCCCcchhhhc----CCCCCCEEECc
Q 002350 380 KLPHNMGVI----LQKLMYMDISKNCFEGNI----PYSAGEMKELSLLDLSRNYFSGGLSQSVVT----GCFSLELLDLS 447 (933)
Q Consensus 380 ~~p~~~~~~----l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~----~l~~L~~L~Ls 447 (933)
..+..+... .++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+.. ..++|++|+++
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 207 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence 444444332 356888888888887633 555667788899999988876433332222 35689999999
Q ss_pred CCcCCCc----CchhhcccCcCCeEEccCccccccc-----cccccCCCCCCEEEccCCcCCCC----ChhhHhhhcccc
Q 002350 448 NNNFEGQ----FFSEYMNLTRLRHLYFENNNFSGKI-----KDGLLSSTSLQVLDISNNMLSGH----IPHWMGNFSSEL 514 (933)
Q Consensus 448 ~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~~~~~L 514 (933)
+|.+++. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++..+..++. |
T Consensus 208 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L 286 (461)
T 1z7x_W 208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES-L 286 (461)
T ss_dssp TSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT-C
T ss_pred CCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCC-c
Confidence 9988874 4666777889999999999887542 22223578899999999988753 5666666666 9
Q ss_pred ceeecCCCcCCCCcchhccC-----CCCCCEEEccCCcCccc----cCccc-cCCCCceEEeecCcCcccCchhhcc---
Q 002350 515 EILSMSKNHLEGNVPVQLNN-----LERLRILDISENRLSGP----IASSL-NLSSVEHLSLQKNALNGLIPGELFR--- 581 (933)
Q Consensus 515 ~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~----~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~--- 581 (933)
++|++++|.+++..+..+.. .++|+.|++++|.+++. ++..+ .+++|++|++++|.+++..+..+..
T Consensus 287 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 366 (461)
T 1z7x_W 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG 366 (461)
T ss_dssp CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc
Confidence 99999999887654444432 36899999999988765 33344 6789999999999887665555543
Q ss_pred --CCCccEEeCcCCcCcc----cCchhhhcCCCccEEEcCCCcCCCCCchhhh-----cCCCCCEEEccCCcCCCCCCch
Q 002350 582 --SCKLVTLNLRDNTFSG----RIPHQINEHSNLRFLLLGGNHLQGPIPDQLC-----QLQKLAMMDLSRNKFSGSIPPC 650 (933)
Q Consensus 582 --l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~g~~p~~ 650 (933)
.++|++|++++|++++ .+|..+..+++|++|++++|++++.-...+. ...+|+.|++.++.+....+..
T Consensus 367 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~ 446 (461)
T 1z7x_W 367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 446 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence 6789999999999986 6788888899999999999998754222222 2346888888888776544444
Q ss_pred hh
Q 002350 651 FA 652 (933)
Q Consensus 651 ~~ 652 (933)
+.
T Consensus 447 l~ 448 (461)
T 1z7x_W 447 LQ 448 (461)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.5e-28 Score=267.60 Aligned_cols=250 Identities=20% Similarity=0.261 Sum_probs=178.0
Q ss_pred CccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEc
Q 002350 391 KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYF 470 (933)
Q Consensus 391 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 470 (933)
+++.++++++.++ .+|..+. +.++.|++++|+++ .++...+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3444444444443 2333222 34555555555554 233333455566666666666666555666666677777777
Q ss_pred cCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCC--CcchhccCCCCCCEEEccCCcC
Q 002350 471 ENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG--NVPVQLNNLERLRILDISENRL 548 (933)
Q Consensus 471 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l 548 (933)
++|.++ .+|..+. ++|++|++++|++++..+..+..++. |+.|++++|.+.. ..+..+.++++|+.|++++|++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQ-MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTT-CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCcc-ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 777666 3444433 67888888888887666666666666 8888888888753 5677788889999999999988
Q ss_pred ccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhh
Q 002350 549 SGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC 628 (933)
Q Consensus 549 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 628 (933)
....... .++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+.
T Consensus 184 ~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 184 TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp CSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred ccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 7643332 278999999999998888888999999999999999999887788889999999999999998 6888889
Q ss_pred cCCCCCEEEccCCcCCCCCCchh
Q 002350 629 QLQKLAMMDLSRNKFSGSIPPCF 651 (933)
Q Consensus 629 ~l~~L~~L~Ls~N~l~g~~p~~~ 651 (933)
.+++|+.|++++|++++..+..|
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSS
T ss_pred cCCCcCEEECCCCcCCccChhhc
Confidence 99999999999999986554444
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=6.8e-29 Score=272.24 Aligned_cols=287 Identities=18% Similarity=0.168 Sum_probs=223.7
Q ss_pred CCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEc
Q 002350 342 KLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDL 421 (933)
Q Consensus 342 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 421 (933)
+++.++++++.++.++ ....+.|++|++++|.+++..|..+ ..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip---~~~~~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVP---KEISPDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCC---SCCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccC---CCCCCCCeEEECCCCcCCccCHhHh-hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4555666655555432 1223567777777777763334344 34788888888888888777778888888888888
Q ss_pred CCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCcccc--ccccccccCCCCCCEEEccCCcC
Q 002350 422 SRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS--GKIKDGLLSSTSLQVLDISNNML 499 (933)
Q Consensus 422 s~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l 499 (933)
++|++. .+|..++ ++|++|++++|.+.+..+..+..+++|++|++++|.++ +..+..+..+ +|++|++++|++
T Consensus 110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 888887 6666543 68888888888888777777888889999999998885 3566677777 899999999998
Q ss_pred CCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchh
Q 002350 500 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGE 578 (933)
Q Consensus 500 ~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~ 578 (933)
+ .+|..+. .+|+.|++++|.+++..+..+..+++|+.|++++|++.+..+..+ .+++|++|++++|+++ .+|..
T Consensus 185 ~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 259 (332)
T 2ft3_A 185 T-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259 (332)
T ss_dssp S-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT
T ss_pred C-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh
Confidence 7 4665543 349999999999998888889999999999999999998887666 8899999999999998 67888
Q ss_pred hccCCCccEEeCcCCcCcccCchhhhc------CCCccEEEcCCCcCC--CCCchhhhcCCCCCEEEccCCc
Q 002350 579 LFRSCKLVTLNLRDNTFSGRIPHQINE------HSNLRFLLLGGNHLQ--GPIPDQLCQLQKLAMMDLSRNK 642 (933)
Q Consensus 579 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~ 642 (933)
+..+++|++|++++|++++..+..+.. ...|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999999999999776666654 367899999999987 6778889999999999999885
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=5.3e-30 Score=279.58 Aligned_cols=275 Identities=19% Similarity=0.200 Sum_probs=152.5
Q ss_pred CCChHHHHHHHHHhhhhcccccccccCCCCCCCCCC--CCCCCCCCCCCcccceeEecC--------CCCcEEEEecCCC
Q 002350 26 KACLETERTALLQIKSFFISASDIEYKDSILSSWVD--DDDDDGMPSDCCHWQRVKCNA--------TTGRVMQLSLKNT 95 (933)
Q Consensus 26 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~--~~~~~~~~~~~C~w~gv~c~~--------~~~~V~~l~l~~~ 95 (933)
..+..+|++||++||+++..+ +.+.+++|.. ... .++|.|.|+.|+. ..++|+.+++++
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~-----~~~~~~~w~~~~~~~-----~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~- 90 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNAD-----RNRWHSAWRQANSNN-----PQIETRTGRALKATADLLEDATQPGRVALELRS- 90 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHC-----CTTHHHHHHHHTTTC-----TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES-
T ss_pred cccCchHHHHHHHHHHhccCC-----chhhhhhhccccccc-----ccccccCCcchhhhHHHHhcccccceeEEEccC-
Confidence 346678999999999988432 3456788831 222 6799999999963 224455555544
Q ss_pred CCCCCCCCCcccccccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEe
Q 002350 96 TRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLI 175 (933)
Q Consensus 96 ~~l~l~~~~~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 175 (933)
|.+. .++ ..+.++++|++|+|++|.++ .+|..++++++|++|+
T Consensus 91 -------------------------------n~l~-~lp----~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~ 133 (328)
T 4fcg_A 91 -------------------------------VPLP-QFP----DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLT 133 (328)
T ss_dssp -------------------------------SCCS-SCC----SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEE
T ss_pred -------------------------------CCch-hcC----hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEE
Confidence 4433 222 23344444444444444444 3444444444444444
Q ss_pred cCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCC---------CCCCCEEEccCCcCCCCCchhccCCCCCCE
Q 002350 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKN---------LTRLKILDISSNQLNGSLPSVISNLTSLEY 246 (933)
Q Consensus 176 Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~---------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 246 (933)
|++|.++ .+| ..+.++++|++|++++|.+.+.+|..++. +++|++|++++|+++ .+|..++++++|++
T Consensus 134 Ls~n~l~-~lp-~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 134 LARNPLR-ALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210 (328)
T ss_dssp EESCCCC-CCC-GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE
T ss_pred CCCCccc-cCc-HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE
Confidence 4444444 222 23444444444444444444444443332 555555555555555 44555555555555
Q ss_pred EECCCCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCC
Q 002350 247 LDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHN 326 (933)
Q Consensus 247 L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 326 (933)
|++++|.+++ +|. .+.++++|++|++++|.....++ ..+..+++|++|++++|++.+.+|..+..+++|++|++++|
T Consensus 211 L~L~~N~l~~-l~~-~l~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 211 LKIRNSPLSA-LGP-AIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp EEEESSCCCC-CCG-GGGGCTTCCEEECTTCTTCCBCC-CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred EEccCCCCCc-Cch-hhccCCCCCEEECcCCcchhhhH-HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 5555555543 221 24444444444444333322221 13445566667777777777777777777777777777777
Q ss_pred CCcccchhHHHhCCCCCCEEEcCCCCCcC
Q 002350 327 KLVGNFPTWLLRNNPKLEVLLLKNNSFSG 355 (933)
Q Consensus 327 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 355 (933)
.+.+.+|.++. .+++|+.+++..+.+..
T Consensus 288 ~~~~~iP~~l~-~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 288 VNLSRLPSLIA-QLPANCIILVPPHLQAQ 315 (328)
T ss_dssp TTCCCCCGGGG-GSCTTCEEECCGGGSCC
T ss_pred CchhhccHHHh-hccCceEEeCCHHHHHH
Confidence 77777777664 67777777766554443
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.5e-30 Score=309.85 Aligned_cols=412 Identities=17% Similarity=0.110 Sum_probs=265.6
Q ss_pred ccccCCCCCCCEeeCCCCCCc---cccCccc-------c-ccCCCCCCCCEEeCCCCcCCCcchhhhcC-CC-CCCEEec
Q 002350 110 MSLFHPLEELQSLDLSVNIFT---YDSKVAA-------Y-DSLRSLKQLKILVLGHNYFDDSIFSYLNT-LP-SLCTLIL 176 (933)
Q Consensus 110 ~~~f~~l~~L~~LdLs~n~~~---~~~~~~~-------~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~-~L~~L~L 176 (933)
...+.++++|++|+|+++... +.++... . .....+++|++|+|++|.+++..+..+.. ++ +|++|+|
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 345678999999999886421 1111000 0 11127899999999999998877777766 34 4999999
Q ss_pred CCCc-ccCccChhhhcCCCCCCEEECCCCCCCCc----chhhcCCCCCCCEEEccCCcCCCC----CchhccCCCCCCEE
Q 002350 177 HWNR-IEGSQTNQGICELKNLFEMNLERNFIGSP----LITCLKNLTRLKILDISSNQLNGS----LPSVISNLTSLEYL 247 (933)
Q Consensus 177 s~n~-i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L 247 (933)
++|. +...........+++|++|+|++|.+++. ++..+.++++|++|++++|.+++. ++..+.++++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 9987 22111112345899999999999998765 455667899999999999999743 34556789999999
Q ss_pred ECCCCcCCCCCChhhhhcCCCCceEecccccCccc--cccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccC
Q 002350 248 DLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLH--VKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSH 325 (933)
Q Consensus 248 ~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 325 (933)
++++|.+.+ ++ ..+.++++|++|+++....... .....+..+++|+.|+++++. .+.+|..+..+++|++|++++
T Consensus 226 ~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 226 KVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLY 302 (592)
T ss_dssp ECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETT
T ss_pred eccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCC
Confidence 999999876 44 6789999999999986433221 112355667889999888753 345777788888999999999
Q ss_pred CCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCC-cccCCCccEEEccC-----------CcCCCCCChhhhhcCCCcc
Q 002350 326 NKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLP-KAKHDFLHHLDISC-----------NNFRGKLPHNMGVILQKLM 393 (933)
Q Consensus 326 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~Ls~-----------n~l~~~~p~~~~~~l~~L~ 393 (933)
|.+++.....+...+++|++|+++ +.+.+..... ...+++|++|++++ +.+++.....+...+++|+
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 381 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE 381 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred CcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence 987765554555688888888888 4333221111 23567788888873 4554333333344577777
Q ss_pred EEEccCCCCCCCccccccC-CCCCCEEEcC----CCcCCCCc----chhhhcCCCCCCEEECcCCc--CCCcCchhhc-c
Q 002350 394 YMDISKNCFEGNIPYSAGE-MKELSLLDLS----RNYFSGGL----SQSVVTGCFSLELLDLSNNN--FEGQFFSEYM-N 461 (933)
Q Consensus 394 ~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls----~n~l~~~~----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~ 461 (933)
+|+++.|.+++..+..+.. +++|+.|+++ .|.+++.. -...+.++++|++|++++|. +++..+..+. .
T Consensus 382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~ 461 (592)
T 3ogk_B 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461 (592)
T ss_dssp EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHS
T ss_pred EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHh
Confidence 7777777776655555554 6777777775 44555320 11223456667777765433 4444333333 2
Q ss_pred cCcCCeEEccCcccccc-ccccccCCCCCCEEEccCCcCCCCChhh-HhhhccccceeecCCCcCCC
Q 002350 462 LTRLRHLYFENNNFSGK-IKDGLLSSTSLQVLDISNNMLSGHIPHW-MGNFSSELEILSMSKNHLEG 526 (933)
Q Consensus 462 l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~~~~~L~~L~L~~n~l~~ 526 (933)
+++|++|++++|.+++. ++..+..+++|++|++++|.+++..... ...++. |+.|++++|++++
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~ls~n~it~ 527 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS-LRYLWVQGYRASM 527 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS-CCEEEEESCBCCT
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCc-cCeeECcCCcCCH
Confidence 56666666666666542 2333355566666666666654332222 223333 5555555555554
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=9.4e-30 Score=302.97 Aligned_cols=397 Identities=12% Similarity=0.050 Sum_probs=257.2
Q ss_pred CCCCCCEEEcCCCCCcCcCcCCccc-CCC-ccEEEccCCc-CCCCCChhhhhcCCCccEEEccCCCCCCC----cccccc
Q 002350 339 NNPKLEVLLLKNNSFSGILQLPKAK-HDF-LHHLDISCNN-FRGKLPHNMGVILQKLMYMDISKNCFEGN----IPYSAG 411 (933)
Q Consensus 339 ~l~~L~~L~L~~n~l~~~~~~~~~~-~~~-L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~ 411 (933)
.+++|++|+|++|.+++.....+.. ++. |++|++++|. ++......+...+++|++|++++|.+++. ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4566666666666554332222222 233 6666666665 11111111223467777777777766544 333345
Q ss_pred CCCCCCEEEcCCCcCCCCcc---hhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCcccc---ccccccccC
Q 002350 412 EMKELSLLDLSRNYFSGGLS---QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS---GKIKDGLLS 485 (933)
Q Consensus 412 ~l~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~~ 485 (933)
.+++|++|++++|.+.+.-. ..++..+++|++|++++|.+.+ ++..+..+++|++|+++.+... +..+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 66777777777777652111 1234567788888888887775 5566777888888888753322 233455677
Q ss_pred CCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcc-hhccCCCCCCEEEccCCcCccccCccc-cCCCCce
Q 002350 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP-VQLNNLERLRILDISENRLSGPIASSL-NLSSVEH 563 (933)
Q Consensus 486 l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~ 563 (933)
+++|+.|+++++.. +.+|..+..++. |++|++++|.+++... ..+..+++|+.|+++++-..+.++... .+++|++
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~-L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILFPFAAQ-IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGGGGGGG-CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred cccccccCccccch-hHHHHHHhhcCC-CcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 78888888887643 366776666666 9999999988765433 446788999999998432223333333 6788999
Q ss_pred EEeec-----------CcCcccC-chhhccCCCccEEeCcCCcCcccCchhhhc-CCCccEEEcC----CCcCCCC----
Q 002350 564 LSLQK-----------NALNGLI-PGELFRSCKLVTLNLRDNTFSGRIPHQINE-HSNLRFLLLG----GNHLQGP---- 622 (933)
Q Consensus 564 L~L~~-----------n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~----~N~l~~~---- 622 (933)
|++++ |.+++.. +.....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 99983 4555332 223455889999999888888777777765 8889999995 6777764
Q ss_pred -CchhhhcCCCCCEEEccCCc--CCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhh
Q 002350 623 -IPDQLCQLQKLAMMDLSRNK--FSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRW 699 (933)
Q Consensus 623 -~p~~l~~l~~L~~L~Ls~N~--l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (933)
++..+.++++|+.|++++|. +++..+..++
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~----------------------------------------------- 459 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG----------------------------------------------- 459 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH-----------------------------------------------
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH-----------------------------------------------
Confidence 44457778899999987543 3321111110
Q ss_pred hhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCC-CCChhhhhccccCeeeccccccccc-cchhcc
Q 002350 700 LSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTG-EIPSDIGQLQAILALNLSNNSLSGS-IPESFS 777 (933)
Q Consensus 700 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~ 777 (933)
..+++|+.|++++|++++ .++..+..+++|+.|+|++|.+++. ++..+.
T Consensus 460 -----------------------------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 460 -----------------------------QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp -----------------------------HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred -----------------------------HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence 124578889999999886 3455567788999999999998765 444556
Q ss_pred CCCCCCEEECcCCeecccCCcCC-cCCCCCCeEEccCC
Q 002350 778 NLKMIESLDISYNKLTGQIPPQL-TALNFLSIFNVSYN 814 (933)
Q Consensus 778 ~l~~L~~LdLs~N~l~~~ip~~l-~~l~~L~~L~ls~N 814 (933)
.+++|++|+|++|++++.....+ ..++.+....+..+
T Consensus 511 ~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred hcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 78999999999999886544333 34566666555544
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=6.8e-28 Score=266.75 Aligned_cols=283 Identities=15% Similarity=0.151 Sum_probs=199.3
Q ss_pred CCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccce
Q 002350 437 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEI 516 (933)
Q Consensus 437 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~ 516 (933)
.|+.....+.+++.++.. |..+ .++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..++. |++
T Consensus 29 ~C~~~~~c~~~~~~l~~i-P~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSI-PSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS-LEH 104 (353)
T ss_dssp EECTTSEEECCSTTCSSC-CTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCE
T ss_pred CCCCCeEeeCCCCCcccc-cccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC-CCE
Confidence 455666788888887743 4433 257888888888888666667888888888888888888666666777766 888
Q ss_pred eecCCCcCCCCcchhccCCCCCCEEEccCCcCccccC-ccc-cCCCCceEEeecC-cCcccCchhhccCCCccEEeCcCC
Q 002350 517 LSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIA-SSL-NLSSVEHLSLQKN-ALNGLIPGELFRSCKLVTLNLRDN 593 (933)
Q Consensus 517 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~-~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N 593 (933)
|++++|++++..+..+.++++|++|++++|++.+..+ ..+ .+++|++|++++| .+.+..+..+..+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 8888888886655667888888888888888876544 344 6788888888887 466666667777778888888888
Q ss_pred cCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCC
Q 002350 594 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP 673 (933)
Q Consensus 594 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 673 (933)
++++..|..+..+++|++|++++|+++...+..+..+++|+.|++++|++++..+..+...
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~------------------- 245 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG------------------- 245 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------------------------
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc-------------------
Confidence 8777777777777777777777777764333334557777777777777765433322110
Q ss_pred CccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhh
Q 002350 674 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG 753 (933)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 753 (933)
.
T Consensus 246 -------------------------------------------------------------------------------~ 246 (353)
T 2z80_A 246 -------------------------------------------------------------------------------E 246 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred hccccCeeecccccccc----ccchhccCCCCCCEEECcCCeecccCCcC-CcCCCCCCeEEccCCcCcccCCC
Q 002350 754 QLQAILALNLSNNSLSG----SIPESFSNLKMIESLDISYNKLTGQIPPQ-LTALNFLSIFNVSYNNLSGRTPD 822 (933)
Q Consensus 754 ~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~~p~ 822 (933)
....++.++|++|.+++ .+|..++++++|++|||++|+++ .+|.. +..+++|++|++++|+++|.+|.
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 12233344444444433 46778888888999999999888 55655 58888999999999988887763
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=263.90 Aligned_cols=285 Identities=20% Similarity=0.214 Sum_probs=229.4
Q ss_pred cCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCC
Q 002350 411 GEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQ 490 (933)
Q Consensus 411 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 490 (933)
..++.....+++++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 34566677899999998 7887553 5899999999999988777899999999999999999988888899999999
Q ss_pred EEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcc-hhccCCCCCCEEEccCCc-CccccCccc-cCCCCceEEee
Q 002350 491 VLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP-VQLNNLERLRILDISENR-LSGPIASSL-NLSSVEHLSLQ 567 (933)
Q Consensus 491 ~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~l~~L~~L~L~ 567 (933)
+|++++|++++..+..+..++. |++|++++|++++..+ ..+..+++|++|++++|+ +.+..+..+ ++++|++|+++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSS-LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTT-CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCcc-CCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 9999999999555555777777 9999999999995444 478999999999999994 666666666 89999999999
Q ss_pred cCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhh---cCCCCCEEEccCCcCC
Q 002350 568 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC---QLQKLAMMDLSRNKFS 644 (933)
Q Consensus 568 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~ 644 (933)
+|.+.+..|..+..+++|++|++++|++....+..+..+++|++|++++|++++..+..+. ..+.++.++++++.++
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred CCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence 9999999999999999999999999999754444456799999999999999986655443 2344555555444433
Q ss_pred CCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhcccee
Q 002350 645 GSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE 724 (933)
Q Consensus 645 g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 724 (933)
T Consensus 263 -------------------------------------------------------------------------------- 262 (353)
T 2z80_A 263 -------------------------------------------------------------------------------- 262 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCC
Q 002350 725 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP 797 (933)
Q Consensus 725 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip 797 (933)
+|.+. .+|+.++.+++|+.|+|++|+++...+..|+++++|++|+|++|++++..|
T Consensus 263 ----------------~~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 263 ----------------DESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ----------------HHHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ----------------Ccchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 22222 457778888889999999999884433446889999999999998886544
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.6e-27 Score=256.53 Aligned_cols=249 Identities=21% Similarity=0.271 Sum_probs=193.2
Q ss_pred EEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccc--cCccc-cCCCCceEEee
Q 002350 491 VLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP--IASSL-NLSSVEHLSLQ 567 (933)
Q Consensus 491 ~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~-~l~~L~~L~L~ 567 (933)
.++.+++.++ .+|..+ +.+|++|++++|+++...+..|.++++|+.|++++|++... .+..+ .+++|++|+++
T Consensus 11 ~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 4555555554 444432 22367777777776644444567777777777777777633 12233 67777788887
Q ss_pred cCcCcccCchhhccCCCccEEeCcCCcCcccCc-hhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCC-
Q 002350 568 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP-HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG- 645 (933)
Q Consensus 568 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g- 645 (933)
+|.+.+ +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+++
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 777764 46667888888888888888886554 578888899999999999888888888889999999999998875
Q ss_pred CCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceee
Q 002350 646 SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEI 725 (933)
Q Consensus 646 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 725 (933)
.+|..+..
T Consensus 166 ~~~~~~~~------------------------------------------------------------------------ 173 (306)
T 2z66_A 166 FLPDIFTE------------------------------------------------------------------------ 173 (306)
T ss_dssp EECSCCTT------------------------------------------------------------------------
T ss_pred cchhHHhh------------------------------------------------------------------------
Confidence 34443322
Q ss_pred ecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCC-
Q 002350 726 YNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN- 804 (933)
Q Consensus 726 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~- 804 (933)
+++|+.||+++|++++..|..++.+++|+.|+|++|++++..+..+.++++|++|||++|++++.+|..+..++
T Consensus 174 -----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 248 (306)
T 2z66_A 174 -----LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248 (306)
T ss_dssp -----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred -----CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence 34678899999999988899999999999999999999988888899999999999999999999999999985
Q ss_pred CCCeEEccCCcCcccCC
Q 002350 805 FLSIFNVSYNNLSGRTP 821 (933)
Q Consensus 805 ~L~~L~ls~N~l~g~~p 821 (933)
+|++|++++|+++|.++
T Consensus 249 ~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 249 SLAFLNLTQNDFACTCE 265 (306)
T ss_dssp TCCEEECTTCCEECSGG
T ss_pred cCCEEEccCCCeecccC
Confidence 99999999999988665
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=5.8e-27 Score=255.55 Aligned_cols=222 Identities=20% Similarity=0.288 Sum_probs=154.1
Q ss_pred cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcC
Q 002350 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 592 (933)
Q Consensus 514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 592 (933)
++.|++++|.++ .+|..+..+++|++|++++|+++ .+|..+ .+++|++|++++|.++ .+|..+..+++|++|++++
T Consensus 83 l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp CCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred eeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 445555555544 34444444555555555555554 333333 4555555555555555 4455555566666666666
Q ss_pred CcCcccCchhhh---------cCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCC
Q 002350 593 NTFSGRIPHQIN---------EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDD 663 (933)
Q Consensus 593 N~l~~~~p~~l~---------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~ 663 (933)
|++.+.+|..+. .+++|++|++++|+++ .+|..+.++++|+.|++++|++++ +|..+..
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~---------- 227 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH---------- 227 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG----------
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc----------
Confidence 555555555543 4788888888888887 677778888888888888888874 4444432
Q ss_pred ccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCc
Q 002350 664 VLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQ 743 (933)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 743 (933)
+++|+.|+|++|+
T Consensus 228 -------------------------------------------------------------------l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 228 -------------------------------------------------------------------LPKLEELDLRGCT 240 (328)
T ss_dssp -------------------------------------------------------------------CTTCCEEECTTCT
T ss_pred -------------------------------------------------------------------CCCCCEEECcCCc
Confidence 2356778888888
Q ss_pred CCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCc
Q 002350 744 LTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817 (933)
Q Consensus 744 l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 817 (933)
+.+.+|..++.+++|+.|+|++|++.+.+|..++++++|++|||++|++.+.+|..+..++.|+.++++.|.+.
T Consensus 241 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888877553
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.8e-26 Score=262.62 Aligned_cols=250 Identities=20% Similarity=0.239 Sum_probs=210.8
Q ss_pred CCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEee
Q 002350 489 LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQ 567 (933)
Q Consensus 489 L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~ 567 (933)
...++.++..++ .+|..+ +.+++.|+|++|++++..+..|.++++|+.|++++|++.+..+..+ ++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456666666665 566543 2348888888888887778888888899999999998888877777 78899999999
Q ss_pred cCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCC-chhhhcCCCCCEEEccCCcCCCC
Q 002350 568 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPI-PDQLCQLQKLAMMDLSRNKFSGS 646 (933)
Q Consensus 568 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~ 646 (933)
+|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|...+.+ +..|.++++|+.|++++|++++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 99988877777888999999999999999777778899999999999985444444 4568999999999999999874
Q ss_pred CCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeee
Q 002350 647 IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIY 726 (933)
Q Consensus 647 ~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 726 (933)
+|. +
T Consensus 211 ~~~-~--------------------------------------------------------------------------- 214 (452)
T 3zyi_A 211 MPN-L--------------------------------------------------------------------------- 214 (452)
T ss_dssp CCC-C---------------------------------------------------------------------------
T ss_pred ccc-c---------------------------------------------------------------------------
Confidence 232 1
Q ss_pred cCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCC
Q 002350 727 NGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFL 806 (933)
Q Consensus 727 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L 806 (933)
..+++|+.|||++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|
T Consensus 215 --~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 215 --TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp --TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred --cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 124578889999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred CeEEccCCcCcccCC
Q 002350 807 SIFNVSYNNLSGRTP 821 (933)
Q Consensus 807 ~~L~ls~N~l~g~~p 821 (933)
+.|++++|++.+.+.
T Consensus 293 ~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 293 VELHLHHNPWNCDCD 307 (452)
T ss_dssp CEEECCSSCEECSTT
T ss_pred CEEEccCCCcCCCCC
Confidence 999999999988765
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=4.2e-26 Score=260.27 Aligned_cols=250 Identities=21% Similarity=0.270 Sum_probs=210.8
Q ss_pred CCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEee
Q 002350 489 LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQ 567 (933)
Q Consensus 489 L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~ 567 (933)
.+.++.++..++ .+|..+. .+++.|+|++|++++..+..|.++++|+.|++++|++.+..+..+ ++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456777777776 6665443 348888888888887777888888899999999998888777777 78889999999
Q ss_pred cCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCC-chhhhcCCCCCEEEccCCcCCCC
Q 002350 568 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPI-PDQLCQLQKLAMMDLSRNKFSGS 646 (933)
Q Consensus 568 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~ 646 (933)
+|++++..+..|..+++|++|++++|+++...+..|..+++|++|++++|+..+.+ +..|.++++|+.|++++|+++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 99988777778889999999999999998777778899999999999985444444 457899999999999999987 3
Q ss_pred CCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeee
Q 002350 647 IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIY 726 (933)
Q Consensus 647 ~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 726 (933)
+|. +
T Consensus 200 ~~~-~--------------------------------------------------------------------------- 203 (440)
T 3zyj_A 200 IPN-L--------------------------------------------------------------------------- 203 (440)
T ss_dssp CCC-C---------------------------------------------------------------------------
T ss_pred ccc-c---------------------------------------------------------------------------
Confidence 342 1
Q ss_pred cCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCC
Q 002350 727 NGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFL 806 (933)
Q Consensus 727 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L 806 (933)
..+++|+.|||++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|
T Consensus 204 --~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 204 --TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp --TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred --CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 124578889999999999889999999999999999999999999999999999999999999998888889999999
Q ss_pred CeEEccCCcCcccCC
Q 002350 807 SIFNVSYNNLSGRTP 821 (933)
Q Consensus 807 ~~L~ls~N~l~g~~p 821 (933)
+.|++++|++.+.+.
T Consensus 282 ~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 282 ERIHLHHNPWNCNCD 296 (440)
T ss_dssp CEEECCSSCEECSST
T ss_pred CEEEcCCCCccCCCC
Confidence 999999999988764
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.4e-26 Score=247.86 Aligned_cols=208 Identities=21% Similarity=0.208 Sum_probs=127.1
Q ss_pred CCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCc-CcccCchhhhcCCCccEEEc
Q 002350 537 RLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNT-FSGRIPHQINEHSNLRFLLL 614 (933)
Q Consensus 537 ~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L 614 (933)
+|+.|++++|++++..+..+ .+++|++|++++|.+++..|..+..+++|++|++++|+ +....|..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 44444444444444333333 44445555555555554555555566666666666665 55444556666666666666
Q ss_pred CCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCcccc
Q 002350 615 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF 694 (933)
Q Consensus 615 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (933)
++|++++..|..+.++++|++|++++|++++..+..+..
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------------- 151 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD----------------------------------------- 151 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------------------
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-----------------------------------------
Confidence 666666655666666666666666666665433332221
Q ss_pred chhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccch
Q 002350 695 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE 774 (933)
Q Consensus 695 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~ 774 (933)
+++|+.|+|++|++++..+..+..+++|+.|+|++|.+++..|.
T Consensus 152 ------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 195 (285)
T 1ozn_A 152 ------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195 (285)
T ss_dssp ------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred ------------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh
Confidence 23456667777776655555566777777777777777777777
Q ss_pred hccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCC
Q 002350 775 SFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 821 (933)
Q Consensus 775 ~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p 821 (933)
.|+++++|+.|++++|++++..|..+..+++|++|++++|++.+.++
T Consensus 196 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 77777777777777777776555567777777777777777776555
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=6.6e-29 Score=295.81 Aligned_cols=456 Identities=14% Similarity=0.102 Sum_probs=246.2
Q ss_pred CCcccceeEecCCCCcEEEEecCCCCCCCCCCCCcccccccccCCCCCCCEeeCCCCCCccccCcc-----------ccc
Q 002350 71 DCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVA-----------AYD 139 (933)
Q Consensus 71 ~~C~w~gv~c~~~~~~V~~l~l~~~~~l~l~~~~~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~-----------~~~ 139 (933)
-|++|+++.. ....++++.+... ......+.++++|++|+++++......... ...
T Consensus 33 vck~W~~~~~----~~~~~l~~~~~~~---------~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~ 99 (594)
T 2p1m_B 33 VCKSWYEIER----WCRRKVFIGNCYA---------VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEA 99 (594)
T ss_dssp SCHHHHHHHH----HHCCEEEESSTTS---------SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHH
T ss_pred HHHHHHHhhh----hhceEEeeccccc---------cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHH
Confidence 3778999832 2334556654322 123345778999999999987532211100 001
Q ss_pred cCCCCCCCCEEeCCCCcCCCcchhhhc-CCCCCCEEecCCC-cccCccChhhhcCCCCCCEEECCCCCCCCcchhhc---
Q 002350 140 SLRSLKQLKILVLGHNYFDDSIFSYLN-TLPSLCTLILHWN-RIEGSQTNQGICELKNLFEMNLERNFIGSPLITCL--- 214 (933)
Q Consensus 140 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n-~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l--- 214 (933)
....+++|++|+|++|.+++..+..+. .+++|++|+|++| .++.........++++|++|+|++|.+++..+..+
T Consensus 100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred HHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 124678999999999999887777775 6899999999998 45433222344589999999999999877554444
Q ss_pred -CCCCCCCEEEccCCcCCCCCch----hccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEecccccCcccc-----c
Q 002350 215 -KNLTRLKILDISSNQLNGSLPS----VISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHV-----K 284 (933)
Q Consensus 215 -~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-----~ 284 (933)
..+++|++|++++|. ...... .+.++++|++|++++|...+.++ ..+.++++|++|+++.+...... .
T Consensus 180 ~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp CTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred hhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEcccccccCccchhhHHHH
Confidence 367799999999987 212222 23457999999999884222233 56778888888887654320000 0
Q ss_pred cCCCCCCCcceEE-EccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCccc
Q 002350 285 TENWLPTSQLIVL-GLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAK 363 (933)
Q Consensus 285 ~~~~~~~~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 363 (933)
...+..+++|+.| .+..... +.++..+..+++|++|++++|.+++.....+...+++|++|++++| +..
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~-------- 327 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED-------- 327 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH--------
T ss_pred HHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH--------
Confidence 0023344455555 2222111 2233333445555555555555443333333334555555555544 221
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccC---------CCCCCCcccccc-CCCCCCEEEcCCCcCCCCcchh
Q 002350 364 HDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISK---------NCFEGNIPYSAG-EMKELSLLDLSRNYFSGGLSQS 433 (933)
Q Consensus 364 ~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~---------n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~ 433 (933)
.....+...+++|++|++++ +.+++.....+. .+++|+.|.++.|.+++.....
T Consensus 328 ----------------~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~ 391 (594)
T 2p1m_B 328 ----------------AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT 391 (594)
T ss_dssp ----------------HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHH
T ss_pred ----------------HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHH
Confidence 11111222244444444422 222221111111 2455555555555554333333
Q ss_pred hhcCCCCCCEEECc--C----CcCCCc-----CchhhcccCcCCeEEccCccccccccccccC-CCCCCEEEccCCcCCC
Q 002350 434 VVTGCFSLELLDLS--N----NNFEGQ-----FFSEYMNLTRLRHLYFENNNFSGKIKDGLLS-STSLQVLDISNNMLSG 501 (933)
Q Consensus 434 ~~~~l~~L~~L~Ls--~----n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~ 501 (933)
+...+++|+.|+++ + +.+++. ++..+..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++
T Consensus 392 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 470 (594)
T 2p1m_B 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470 (594)
T ss_dssp HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH
T ss_pred HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH
Confidence 33345555555555 2 233311 111234556666666655 444433333433 5666777777666654
Q ss_pred CChhhH-hhhccccceeecCCCcCCCCcch-hccCCCCCCEEEccCCcCccccCccc--cCCCCceEEeecC
Q 002350 502 HIPHWM-GNFSSELEILSMSKNHLEGNVPV-QLNNLERLRILDISENRLSGPIASSL--NLSSVEHLSLQKN 569 (933)
Q Consensus 502 ~~p~~l-~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~--~l~~L~~L~L~~n 569 (933)
..+..+ ..++. |+.|++++|.+++.... ....+++|+.|++++|+++......+ .++.|+...+..+
T Consensus 471 ~~~~~l~~~~~~-L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 471 LGMHHVLSGCDS-LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHHHHHHCTT-CCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHHHHHhcCCC-cCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 444444 33444 77777777766443332 33446677777777776643222222 4556655555444
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=6.2e-26 Score=258.85 Aligned_cols=250 Identities=24% Similarity=0.286 Sum_probs=219.5
Q ss_pred cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcC
Q 002350 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 592 (933)
Q Consensus 514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 592 (933)
...++.++..++ .+|..+. ++++.|++++|++.+..+..+ ++++|++|+|++|.+.+..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 567888888887 5676554 689999999999998888777 899999999999999998889999999999999999
Q ss_pred CcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCc-hhhhhhccccCCCCccCCCCCC
Q 002350 593 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVGSDDVLNGSKLN 671 (933)
Q Consensus 593 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~l~~~~~~~~~~~~~~ 671 (933)
|++++..+..|..+++|++|+|++|++++..+..|.++++|+.|++++|+..+.+|. .|
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-------------------- 181 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF-------------------- 181 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT--------------------
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh--------------------
Confidence 999977777899999999999999999987788999999999999999665544443 12
Q ss_pred CCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChh
Q 002350 672 SPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSD 751 (933)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~ 751 (933)
..+++|+.|+|++|+++ .+| .
T Consensus 182 ---------------------------------------------------------~~l~~L~~L~L~~n~l~-~~~-~ 202 (440)
T 3zyj_A 182 ---------------------------------------------------------EGLSNLRYLNLAMCNLR-EIP-N 202 (440)
T ss_dssp ---------------------------------------------------------TTCSSCCEEECTTSCCS-SCC-C
T ss_pred ---------------------------------------------------------hcccccCeecCCCCcCc-ccc-c
Confidence 12457889999999998 666 4
Q ss_pred hhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCC-CcCCccC
Q 002350 752 IGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-GQFATFD 830 (933)
Q Consensus 752 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~~~~~ 830 (933)
+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|||++|++++..+.. ..+..+.
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 889999999999999999999999999999999999999999999999999999999999999999877654 5566777
Q ss_pred cccccCCCCCCCccc
Q 002350 831 ESSYRGNPSLCAWLI 845 (933)
Q Consensus 831 ~~~~~gN~~lc~~~l 845 (933)
...+.+||+.|+|.+
T Consensus 283 ~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 283 RIHLHHNPWNCNCDI 297 (440)
T ss_dssp EEECCSSCEECSSTT
T ss_pred EEEcCCCCccCCCCc
Confidence 888999999998853
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.2e-26 Score=246.39 Aligned_cols=252 Identities=21% Similarity=0.257 Sum_probs=203.7
Q ss_pred CEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeec
Q 002350 490 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQK 568 (933)
Q Consensus 490 ~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~ 568 (933)
++++.+++.++ .+|..+ +.+|+.|++++|.+++..+..|..+++|++|++++|++.+..+..+ .+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56677777666 555433 2348888888888887666778888888888888888887777766 788888888888
Q ss_pred Cc-CcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCC
Q 002350 569 NA-LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 647 (933)
Q Consensus 569 n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~ 647 (933)
|. +....|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 87 77666888889999999999999999888888999999999999999999877778999999999999999988544
Q ss_pred CchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeec
Q 002350 648 PPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYN 727 (933)
Q Consensus 648 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 727 (933)
+..+..
T Consensus 170 ~~~~~~-------------------------------------------------------------------------- 175 (285)
T 1ozn_A 170 ERAFRG-------------------------------------------------------------------------- 175 (285)
T ss_dssp TTTTTT--------------------------------------------------------------------------
T ss_pred HHHhcC--------------------------------------------------------------------------
Confidence 333322
Q ss_pred CCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCC
Q 002350 728 GSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLS 807 (933)
Q Consensus 728 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~ 807 (933)
+++|+.|++++|++++..|..++.+++|+.|++++|++++..+..+.++++|+.|+|++|.+....+.. .....++
T Consensus 176 ---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~ 251 (285)
T 1ozn_A 176 ---LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQ 251 (285)
T ss_dssp ---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHH
T ss_pred ---ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHH
Confidence 346788999999999988999999999999999999999888888999999999999999998654421 1123455
Q ss_pred eEEccCCcCcccCCCC
Q 002350 808 IFNVSYNNLSGRTPDK 823 (933)
Q Consensus 808 ~L~ls~N~l~g~~p~~ 823 (933)
.+..+.|.+.+..|..
T Consensus 252 ~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 252 KFRGSSSEVPCSLPQR 267 (285)
T ss_dssp HCCSEECCCBEEESGG
T ss_pred hcccccCccccCCchH
Confidence 5667888888888854
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=9.5e-26 Score=258.23 Aligned_cols=250 Identities=23% Similarity=0.261 Sum_probs=218.6
Q ss_pred cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcC
Q 002350 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 592 (933)
Q Consensus 514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 592 (933)
...++.++..++ .+|..+. ++++.|++++|++++..+..+ .+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 567888888887 5666554 689999999999999888888 899999999999999999899999999999999999
Q ss_pred CcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCch-hhhhhccccCCCCccCCCCCC
Q 002350 593 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPC-FANVLSWRVGSDDVLNGSKLN 671 (933)
Q Consensus 593 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~-~~~l~~l~~~~~~~~~~~~~~ 671 (933)
|++++..+..+..+++|++|+|++|++++..+..|.++++|+.|++++|+..+.+|.. +
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-------------------- 192 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF-------------------- 192 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT--------------------
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc--------------------
Confidence 9999877788999999999999999999877788999999999999996655444431 2
Q ss_pred CCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChh
Q 002350 672 SPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSD 751 (933)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~ 751 (933)
..+++|+.|+|++|++++ +| .
T Consensus 193 ---------------------------------------------------------~~l~~L~~L~L~~n~l~~-~~-~ 213 (452)
T 3zyi_A 193 ---------------------------------------------------------EGLFNLKYLNLGMCNIKD-MP-N 213 (452)
T ss_dssp ---------------------------------------------------------TTCTTCCEEECTTSCCSS-CC-C
T ss_pred ---------------------------------------------------------cCCCCCCEEECCCCcccc-cc-c
Confidence 124578899999999995 55 4
Q ss_pred hhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCC-CcCCccC
Q 002350 752 IGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-GQFATFD 830 (933)
Q Consensus 752 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~~~~~ 830 (933)
+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.||+++|++++..+.. ..+..+.
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 889999999999999999999999999999999999999999999999999999999999999999776654 4566777
Q ss_pred cccccCCCCCCCccc
Q 002350 831 ESSYRGNPSLCAWLI 845 (933)
Q Consensus 831 ~~~~~gN~~lc~~~l 845 (933)
...+.+||+.|+|.+
T Consensus 294 ~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 294 ELHLHHNPWNCDCDI 308 (452)
T ss_dssp EEECCSSCEECSTTT
T ss_pred EEEccCCCcCCCCCc
Confidence 888999999998864
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.7e-27 Score=258.45 Aligned_cols=250 Identities=18% Similarity=0.207 Sum_probs=194.2
Q ss_pred cCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCC-CCcchhcc-------CCCCCCEEEccCCcCccccCcc
Q 002350 484 LSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE-GNVPVQLN-------NLERLRILDISENRLSGPIASS 555 (933)
Q Consensus 484 ~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~ 555 (933)
+..++|++|++++|.+ .+|..+... |+.|++++|++. ..+|..+. ++++|++|++++|++++.+|..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 4455677888888887 667666543 788888888884 45565554 6888888999888888777764
Q ss_pred c---cCCCCceEEeecCcCcccCchhhccC-----CCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCC--Cch
Q 002350 556 L---NLSSVEHLSLQKNALNGLIPGELFRS-----CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP--IPD 625 (933)
Q Consensus 556 ~---~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~p~ 625 (933)
+ .+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..++.+++|++|++++|++.+. .|.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 3 688889999999988877 7777776 8899999999999887778888899999999999988765 344
Q ss_pred hh--hcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhh
Q 002350 626 QL--CQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSAL 703 (933)
Q Consensus 626 ~l--~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 703 (933)
.+ ..+++|+.|++++|++++ +|.....+.
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~------------------------------------------------ 224 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMET-PSGVCSALA------------------------------------------------ 224 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCC-HHHHHHHHH------------------------------------------------
T ss_pred HHHhccCCCCCEEECCCCcCcc-hHHHHHHHH------------------------------------------------
Confidence 44 788999999999998873 111100000
Q ss_pred hhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCC-hhhhhccccCeeeccccccccccchhccCCCCC
Q 002350 704 EKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIP-SDIGQLQAILALNLSNNSLSGSIPESFSNLKMI 782 (933)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 782 (933)
..+++|+.|||++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|
T Consensus 225 -------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L 276 (312)
T 1wwl_A 225 -------------------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKL 276 (312)
T ss_dssp -------------------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEE
T ss_pred -------------------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCc
Confidence 123578889999999998775 45667889999999999998 7787776 899
Q ss_pred CEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcc
Q 002350 783 ESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 818 (933)
Q Consensus 783 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 818 (933)
++|||++|++++. |. +..+++|++|++++|++++
T Consensus 277 ~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 277 SVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred eEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9999999999976 66 8899999999999999876
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=9.5e-26 Score=244.25 Aligned_cols=231 Identities=21% Similarity=0.261 Sum_probs=169.3
Q ss_pred CCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCc--CchhhcccCcCCeEEccCccccccccccccCCCCCCE
Q 002350 414 KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ--FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQV 491 (933)
Q Consensus 414 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 491 (933)
++|++|++++|.+. .+|...+..+++|++|++++|.+... .+..+..+++|++|++++|.++ .++..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence 34455555555544 44444444555555555555555422 2344455666666666666666 34555666777777
Q ss_pred EEccCCcCCCCCh-hhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCcc-ccCccc-cCCCCceEEeec
Q 002350 492 LDISNNMLSGHIP-HWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSL-NLSSVEHLSLQK 568 (933)
Q Consensus 492 L~Ls~n~l~~~~p-~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~-~l~~L~~L~L~~ 568 (933)
|++++|++++..+ ..+..++. |++|++++|.+.+..+..+..+++|++|++++|++.+ ..|..+ .+++|++|++++
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTT-CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EECCCCcccccccchhhhhccC-CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 7777777764333 34555555 7888888888777777778888888888888888876 456666 788889999999
Q ss_pred CcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCC-CCCEEEccCCcCCCCC
Q 002350 569 NALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ-KLAMMDLSRNKFSGSI 647 (933)
Q Consensus 569 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~~ 647 (933)
|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..++ +|+.|++++|++++..
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 988888888899999999999999999987777889999999999999999998998998884 8999999999998643
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.1e-27 Score=258.19 Aligned_cols=264 Identities=20% Similarity=0.212 Sum_probs=181.0
Q ss_pred eEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCC
Q 002350 467 HLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN 546 (933)
Q Consensus 467 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 546 (933)
..+++.+.+.......+..+++|++|++++|++++..|..+..++. |++|++++|.+++..+ +..+++|++|++++|
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTT-CCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCc-CCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 3344444444333333344556666666666666555555665555 6666666666665443 667777777777777
Q ss_pred cCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchh
Q 002350 547 RLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQ 626 (933)
Q Consensus 547 ~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 626 (933)
++++.. ..++|++|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|++++|++++..+..
T Consensus 91 ~l~~l~----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 91 YVQELL----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EEEEEE----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred cccccc----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 766433 2367777777777777654433 467888888888888766777777888888888888888766666
Q ss_pred hh-cCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhh
Q 002350 627 LC-QLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEK 705 (933)
Q Consensus 627 l~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 705 (933)
+. .+++|+.|++++|.+++. |..
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~-~~~------------------------------------------------------- 187 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDV-KGQ------------------------------------------------------- 187 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEE-ECC-------------------------------------------------------
T ss_pred HhhccCcCCEEECCCCcCccc-ccc-------------------------------------------------------
Confidence 63 678888888888887632 110
Q ss_pred hhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEE
Q 002350 706 RAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESL 785 (933)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 785 (933)
..+++|+.|||++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|
T Consensus 188 -----------------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 188 -----------------------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242 (317)
T ss_dssp -----------------------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred -----------------------cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEE
Confidence 013467778888888884 4555888888888888888888 467778888888888
Q ss_pred ECcCCeec-ccCCcCCcCCCCCCeEEcc-CCcCcccCC
Q 002350 786 DISYNKLT-GQIPPQLTALNFLSIFNVS-YNNLSGRTP 821 (933)
Q Consensus 786 dLs~N~l~-~~ip~~l~~l~~L~~L~ls-~N~l~g~~p 821 (933)
++++|.++ +.+|..+..++.|+.++++ .+.++|..|
T Consensus 243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp ECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred EccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 88888888 7777888888888888888 445655544
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=3.3e-27 Score=256.11 Aligned_cols=249 Identities=19% Similarity=0.227 Sum_probs=194.1
Q ss_pred cccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCC-CCChhhHh-------hhccccceeecCCCcCCCCcchh
Q 002350 460 MNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS-GHIPHWMG-------NFSSELEILSMSKNHLEGNVPVQ 531 (933)
Q Consensus 460 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~-------~~~~~L~~L~L~~n~l~~~~~~~ 531 (933)
+..++|+.|++++|.+ .+|..+... |++|++++|.+. ..+|..+. .++. |++|++++|++++.+|..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISG-LQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC-CCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCC-ccEEEccCCcccchhHHH
Confidence 3455666666777666 455544333 666777777663 34555444 4555 888888888888877776
Q ss_pred c--cCCCCCCEEEccCCcCccccCccc-cC-----CCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCccc--Cch
Q 002350 532 L--NNLERLRILDISENRLSGPIASSL-NL-----SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR--IPH 601 (933)
Q Consensus 532 ~--~~l~~L~~L~Ls~n~l~~~~~~~~-~l-----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~ 601 (933)
+ ..+++|++|++++|++++. |..+ .+ ++|++|++++|++.+..|..+..+++|++|++++|++.+. .|.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 8888999999999998887 5555 44 8999999999999988889999999999999999998765 344
Q ss_pred hh--hcCCCccEEEcCCCcCCCC--Cc-hhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCcc
Q 002350 602 QI--NEHSNLRFLLLGGNHLQGP--IP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD 676 (933)
Q Consensus 602 ~l--~~l~~L~~L~L~~N~l~~~--~p-~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 676 (933)
.+ ..+++|++|++++|++++. ++ ..+.++++|+.|++++|++++.+|....
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------ 249 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC------------------------ 249 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC------------------------
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh------------------------
Confidence 55 8899999999999999842 22 4456889999999999999976642110
Q ss_pred chhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhcc
Q 002350 677 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQ 756 (933)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 756 (933)
..+++|+.|||++|+++ .+|..+. +
T Consensus 250 ----------------------------------------------------~~l~~L~~L~Ls~N~l~-~ip~~~~--~ 274 (312)
T 1wwl_A 250 ----------------------------------------------------DWPSQLNSLNLSFTGLK-QVPKGLP--A 274 (312)
T ss_dssp ----------------------------------------------------CCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred ----------------------------------------------------hhcCCCCEEECCCCccC-hhhhhcc--C
Confidence 11347888999999999 8888877 8
Q ss_pred ccCeeeccccccccccchhccCCCCCCEEECcCCeeccc
Q 002350 757 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ 795 (933)
Q Consensus 757 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 795 (933)
+|+.|+|++|++++. |. +..+++|++|+|++|++++.
T Consensus 275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 999999999999976 66 99999999999999999853
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=8e-28 Score=286.49 Aligned_cols=273 Identities=16% Similarity=0.078 Sum_probs=134.6
Q ss_pred CCCCCCEEEcCCCCCcCcCcCCcc-cCCCccEEEccCC-cCCCCCChhhhhcCCCccEEEccCCCCCCCccccc----cC
Q 002350 339 NNPKLEVLLLKNNSFSGILQLPKA-KHDFLHHLDISCN-NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA----GE 412 (933)
Q Consensus 339 ~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~Ls~n-~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l----~~ 412 (933)
.+++|++|++++|.+++.....+. .+++|++|++++| .+++.....+...+++|++|++++|.+++..+..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 455666666666655443222222 4556666666665 33322122333346666666666666554333322 24
Q ss_pred CCCCCEEEcCCCc--CCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCc-------cccccccccc
Q 002350 413 MKELSLLDLSRNY--FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN-------NFSGKIKDGL 483 (933)
Q Consensus 413 l~~L~~L~Ls~n~--l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~l 483 (933)
+++|++|++++|. +.......+...+++|++|++++|...+.++..+..+++|++|+++.+ .+.+ ++..+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHH
Confidence 5567777777665 211111222334567777777766322225555666677777765443 2232 23355
Q ss_pred cCCCCCCEE-EccCCcCCCCChhhHhhhccccceeecCCCcCCCCc-chhccCCCCCCEEEccCCcCccc-cCccc-cCC
Q 002350 484 LSSTSLQVL-DISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNV-PVQLNNLERLRILDISENRLSGP-IASSL-NLS 559 (933)
Q Consensus 484 ~~l~~L~~L-~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~-~l~ 559 (933)
..+++|+.| .+.+... +.++..+..++. |+.|++++|.+++.. +..+..+++|+.|++++| +... ++... .++
T Consensus 262 ~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~-L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVP-AYLPAVYSVCSR-LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HTCTTCCEEECCBTCCG-GGGGGGHHHHTT-CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred hcCCCcccccCCcccch-hhHHHHHHhhCC-CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 666667666 3333222 234444444444 677777766655332 222456666666666666 3221 11112 356
Q ss_pred CCceEEeec---------CcCcccCchhhc-cCCCccEEeCcCCcCcccCchhhh-cCCCccEEEcC
Q 002350 560 SVEHLSLQK---------NALNGLIPGELF-RSCKLVTLNLRDNTFSGRIPHQIN-EHSNLRFLLLG 615 (933)
Q Consensus 560 ~L~~L~L~~---------n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~ 615 (933)
+|++|++.+ +.+++.....+. .+++|+.|+++.|.+++..+..+. .+++|+.|+++
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 666666633 223222112222 255555555555555544443333 35555555555
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.7e-24 Score=252.09 Aligned_cols=261 Identities=26% Similarity=0.316 Sum_probs=133.1
Q ss_pred CCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEc
Q 002350 415 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 494 (933)
Q Consensus 415 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 494 (933)
+++.|++++|.++ .+|..+. ++|++|++++|.++.. |. .+++|++|++++|+++ .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 4667777777766 5555432 5666666666666532 22 3456666666666655 2333 3455666666
Q ss_pred cCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCccc
Q 002350 495 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 574 (933)
Q Consensus 495 s~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~ 574 (933)
++|+++ .+|. .. .+|+.|++++|++++ +|.. +++|+.|++++|++++.
T Consensus 109 s~N~l~-~l~~---~l-~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l----------------------- 156 (622)
T 3g06_A 109 FSNPLT-HLPA---LP-SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL----------------------- 156 (622)
T ss_dssp CSCCCC-CCCC---CC-TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-----------------------
T ss_pred cCCcCC-CCCC---CC-CCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-----------------------
Confidence 666555 2333 11 225555555555553 3321 24455555555544432
Q ss_pred CchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhh
Q 002350 575 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV 654 (933)
Q Consensus 575 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l 654 (933)
|. ..++|+.|++++|++++ +| ..+++|+.|++++|++++ +|.. +++|+.|++++|.++ .+|..
T Consensus 157 -~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---- 219 (622)
T 3g06_A 157 -PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---- 219 (622)
T ss_dssp -CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC----
T ss_pred -CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC----
Confidence 21 12345555555555542 33 233455555555555553 2321 245555555555554 12210
Q ss_pred hccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcc
Q 002350 655 LSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRV 734 (933)
Q Consensus 655 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 734 (933)
+++|
T Consensus 220 ----------------------------------------------------------------------------~~~L 223 (622)
T 3g06_A 220 ----------------------------------------------------------------------------PSGL 223 (622)
T ss_dssp ----------------------------------------------------------------------------CTTC
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 1234
Q ss_pred cEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCC
Q 002350 735 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN 814 (933)
Q Consensus 735 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 814 (933)
+.|+|++|++++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+..+++|+.|++++|
T Consensus 224 ~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 224 KELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred CEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence 555666666553 44 23355566666666665 3343 4455666666666666 55555666666666666666
Q ss_pred cCcccCC
Q 002350 815 NLSGRTP 821 (933)
Q Consensus 815 ~l~g~~p 821 (933)
++++.+|
T Consensus 295 ~l~~~~~ 301 (622)
T 3g06_A 295 PLSERTL 301 (622)
T ss_dssp CCCHHHH
T ss_pred CCCCcCH
Confidence 6665554
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=9.1e-26 Score=259.63 Aligned_cols=215 Identities=20% Similarity=0.202 Sum_probs=146.0
Q ss_pred cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCC
Q 002350 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 593 (933)
Q Consensus 514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 593 (933)
|+.|++++|.+++..|..|..+++|++|++++|.+++..+ ...+++|++|+|++|.+++..+ .++|++|++++|
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N 109 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANN 109 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSS
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCC
Confidence 7777777777776666667777777777777777766555 2266777777777777664422 267777777777
Q ss_pred cCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCC
Q 002350 594 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP 673 (933)
Q Consensus 594 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 673 (933)
.+++..+. .+++|+.|+|++|.+++..|..+..+++|+.|++++|.+++.+|..+..
T Consensus 110 ~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-------------------- 166 (487)
T 3oja_A 110 NISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-------------------- 166 (487)
T ss_dssp CCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG--------------------
T ss_pred cCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh--------------------
Confidence 77765443 2466777777777777766777777777777777777777655544321
Q ss_pred CccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhh
Q 002350 674 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG 753 (933)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 753 (933)
.+++|+.|||++|.+++..+ +.
T Consensus 167 --------------------------------------------------------~l~~L~~L~Ls~N~l~~~~~--~~ 188 (487)
T 3oja_A 167 --------------------------------------------------------SSDTLEHLNLQYNFIYDVKG--QV 188 (487)
T ss_dssp --------------------------------------------------------GTTTCCEEECTTSCCCEEEC--CC
T ss_pred --------------------------------------------------------hCCcccEEecCCCccccccc--cc
Confidence 12356667777777775422 23
Q ss_pred hccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCc
Q 002350 754 QLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817 (933)
Q Consensus 754 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 817 (933)
.+++|+.|+|++|.+++.+| .++.+++|+.|||++|.+++ +|..+..++.|+.|++++|++.
T Consensus 189 ~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 46777777777777776444 37777777777777777774 5666777777777777777776
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.8e-26 Score=262.79 Aligned_cols=235 Identities=21% Similarity=0.224 Sum_probs=187.6
Q ss_pred CCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEe
Q 002350 487 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSL 566 (933)
Q Consensus 487 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L 566 (933)
++|++|++++|.+++..|..+..++. |++|+|++|.+++..| +..+++|+.|++++|++++..+ .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTT-CCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCC-CCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 36667777777776655566666655 7777777777765554 7777788888888887765443 378888888
Q ss_pred ecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhh-cCCCCCEEEccCCcCCC
Q 002350 567 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC-QLQKLAMMDLSRNKFSG 645 (933)
Q Consensus 567 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g 645 (933)
++|.+++..+. .+++|+.|++++|.+++..|..++.+++|++|+|++|.+++.+|..+. .+++|+.|+|++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 88888776554 357899999999999988888889999999999999999988888876 78999999999999885
Q ss_pred CCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceee
Q 002350 646 SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEI 725 (933)
Q Consensus 646 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 725 (933)
..+.
T Consensus 184 ~~~~---------------------------------------------------------------------------- 187 (487)
T 3oja_A 184 VKGQ---------------------------------------------------------------------------- 187 (487)
T ss_dssp EECC----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 3111
Q ss_pred ecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeec-ccCCcCCcCCC
Q 002350 726 YNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT-GQIPPQLTALN 804 (933)
Q Consensus 726 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~l~ 804 (933)
..+++|+.|||++|.+++. |..++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++
T Consensus 188 ---~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~ 262 (487)
T 3oja_A 188 ---VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (487)
T ss_dssp ---CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred ---ccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence 1135788899999999964 4559999999999999999996 7888999999999999999998 78888888888
Q ss_pred CCCeEEcc
Q 002350 805 FLSIFNVS 812 (933)
Q Consensus 805 ~L~~L~ls 812 (933)
.|+.++++
T Consensus 263 ~L~~l~~~ 270 (487)
T 3oja_A 263 RVQTVAKQ 270 (487)
T ss_dssp HHHHHHHH
T ss_pred CCcEEecc
Confidence 88888876
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2.6e-26 Score=249.58 Aligned_cols=267 Identities=19% Similarity=0.204 Sum_probs=204.4
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEEC
Q 002350 367 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDL 446 (933)
Q Consensus 367 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 446 (933)
++..+++.+.+. ..+..++..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence 344455555554 3444555556788888888888887777788888888888888888875443 567888888888
Q ss_pred cCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCC
Q 002350 447 SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG 526 (933)
Q Consensus 447 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~ 526 (933)
++|.+++.. ..++|++|++++|.+++..+.. +++|++|++++|++++..+..+..++. |++|++++|.+++
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDT 158 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSS-EEEEECTTSCCCE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCC-CCEEECCCCCCCc
Confidence 888877533 3478888888888888655443 577889999999888666666777766 9999999999887
Q ss_pred Ccchhc-cCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhc
Q 002350 527 NVPVQL-NNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE 605 (933)
Q Consensus 527 ~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 605 (933)
..+..+ ..+++|++|++++|++++. +....+++|++|++++|++++.. ..+..+++|++|++++|+++ .+|..+..
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred ccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhc
Confidence 766666 4688899999999988766 33335888999999999988654 45888899999999999988 56778888
Q ss_pred CCCccEEEcCCCcCC-CCCchhhhcCCCCCEEEccC-CcCCCCCCc
Q 002350 606 HSNLRFLLLGGNHLQ-GPIPDQLCQLQKLAMMDLSR-NKFSGSIPP 649 (933)
Q Consensus 606 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~-N~l~g~~p~ 649 (933)
+++|+.|++++|++. +.+|..+..+++|+.+++++ +.++|..|.
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 899999999999998 67788888888888888884 445555543
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=5.2e-24 Score=226.76 Aligned_cols=209 Identities=21% Similarity=0.240 Sum_probs=147.7
Q ss_pred CCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcC
Q 002350 537 RLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 615 (933)
Q Consensus 537 ~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 615 (933)
+|++|++++|++++..+..+ .+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555555444333 55555566666665555555566667777777777777776666677777777777777
Q ss_pred CCcCCCCCchhhhcCCCCCEEEccCCcCCCC-CCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCcccc
Q 002350 616 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS-IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF 694 (933)
Q Consensus 616 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~-~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (933)
+|++++..+..+..+++|+.|++++|++++. +|..+.++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l---------------------------------------- 148 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL---------------------------------------- 148 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC----------------------------------------
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccC----------------------------------------
Confidence 7777766665677777777777777777652 45544332
Q ss_pred chhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccC----eeecccccccc
Q 002350 695 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAIL----ALNLSNNSLSG 770 (933)
Q Consensus 695 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~----~L~Ls~N~l~~ 770 (933)
++|+.||+++|++++..+..+..+++|+ .|++++|.+++
T Consensus 149 -------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~ 191 (276)
T 2z62_A 149 -------------------------------------TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (276)
T ss_dssp -------------------------------------TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred -------------------------------------CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence 3566778888888776667777777776 78899999987
Q ss_pred ccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCC
Q 002350 771 SIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK 823 (933)
Q Consensus 771 ~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~ 823 (933)
..+..+.. .+|+.|+|++|++++..+..+..+++|+.|++++|+++|.+|..
T Consensus 192 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 192 IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred cCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 66655544 48999999999999777777889999999999999999888754
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=2.3e-23 Score=244.25 Aligned_cols=264 Identities=24% Similarity=0.309 Sum_probs=123.7
Q ss_pred CCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEc
Q 002350 318 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDI 397 (933)
Q Consensus 318 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L 397 (933)
++.|++++|.++ .+|..+. ++|++|++++|.++.+.. .+++|++|++++|+++ .+|. .+++|++|++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI 108 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEE
T ss_pred CcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEEC
Confidence 455555555554 4444321 445555555555444322 3445555555555554 3443 2455555555
Q ss_pred cCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccc
Q 002350 398 SKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSG 477 (933)
Q Consensus 398 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 477 (933)
++|.+++ +|. .+++|+.|++++|+++ .+|. .+++|++|++++|.+++. +. .+++|+.|++++|.+++
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC
Confidence 5555543 222 3445555555555554 2332 234555555555555432 11 23445555555555553
Q ss_pred cccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCcccc
Q 002350 478 KIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN 557 (933)
Q Consensus 478 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 557 (933)
+| ..+++|+.|++++|++++ +|.. ..+|+.|++++|.++. +|. .+++|+.|++++|++++. | ..
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~~-l~~~----~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~l-p--~~ 239 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLAS-LPTL----PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSL-P--VL 239 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC-C--CC
T ss_pred -Cc---ccCCCCcEEECCCCCCCC-CCCc----cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcC-C--CC
Confidence 33 224455555555555542 3321 1225555555555552 222 124455555555555442 2 12
Q ss_pred CCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhh
Q 002350 558 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC 628 (933)
Q Consensus 558 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 628 (933)
+++|+.|++++|+++. +|. .+++|+.|++++|+++ .+|..+..+++|+.|+|++|++++..|..+.
T Consensus 240 l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 240 PSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 3445555555555542 222 3344555555555555 3444555555555555555555544444443
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.1e-22 Score=215.54 Aligned_cols=207 Identities=26% Similarity=0.309 Sum_probs=165.3
Q ss_pred CCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCC
Q 002350 537 RLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 616 (933)
Q Consensus 537 ~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 616 (933)
..+.+++++++++. +|..+ .+++++|++++|++++..+..|..+++|++|++++|+++...+..|..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCc-cCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45667777777664 33222 25677778888887777667788888888888888888866566678888888888888
Q ss_pred CcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccch
Q 002350 617 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGM 696 (933)
Q Consensus 617 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (933)
|++++..+..|..+++|+.|++++|++++..|..+..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------- 131 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------------------------------- 131 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-------------------------------------------
Confidence 8888777777888888999999988888655544432
Q ss_pred hhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhc
Q 002350 697 WRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESF 776 (933)
Q Consensus 697 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 776 (933)
+++|+.|+|++|++++..+..++.+++|+.|+|++|++++..+..|
T Consensus 132 ----------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 177 (270)
T 2o6q_A 132 ----------------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177 (270)
T ss_dssp ----------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ----------------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHh
Confidence 3467789999999987666678899999999999999998888889
Q ss_pred cCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCC
Q 002350 777 SNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 822 (933)
Q Consensus 777 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~ 822 (933)
.++++|++|+|++|++++..+..+..+++|+.|++++|++.+.++.
T Consensus 178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 9999999999999999987777789999999999999999887763
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=6.3e-23 Score=218.40 Aligned_cols=227 Identities=20% Similarity=0.214 Sum_probs=181.8
Q ss_pred EEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCc
Q 002350 492 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNA 570 (933)
Q Consensus 492 L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~ 570 (933)
++..+..+. .+|..+ +.+|++|++++|++++..+..|.++++|++|++++|++.+..+..+ .+++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 344444444 455433 2348888888888887666678888888888888888887777666 78889999999999
Q ss_pred CcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCC-CchhhhcCCCCCEEEccCCcCCCCCCc
Q 002350 571 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP-IPDQLCQLQKLAMMDLSRNKFSGSIPP 649 (933)
Q Consensus 571 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~g~~p~ 649 (933)
+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++. +|..+.++++|+.|++++|++++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 8888888899999999999999999977777889999999999999999874 689999999999999999999876666
Q ss_pred hhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCC
Q 002350 650 CFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGS 729 (933)
Q Consensus 650 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (933)
.+..+..+
T Consensus 168 ~~~~l~~L------------------------------------------------------------------------ 175 (276)
T 2z62_A 168 DLRVLHQM------------------------------------------------------------------------ 175 (276)
T ss_dssp GGHHHHTC------------------------------------------------------------------------
T ss_pred Hhhhhhhc------------------------------------------------------------------------
Confidence 66554321
Q ss_pred CCCccc-EEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCC
Q 002350 730 NVNRVT-GLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP 797 (933)
Q Consensus 730 ~l~~L~-~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip 797 (933)
+.+. .|++++|++++..+..+. ..+|+.|+|++|++++..+..|+++++|+.|+|++|++++..|
T Consensus 176 --~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 176 --PLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp --TTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred --cccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 1222 699999999966555554 4589999999999998888888999999999999999986543
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=3.3e-23 Score=219.75 Aligned_cols=221 Identities=21% Similarity=0.227 Sum_probs=178.1
Q ss_pred cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCC
Q 002350 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 593 (933)
Q Consensus 514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 593 (933)
+..+++.++.+.+.. ....+++|+.|++++|.+.. ++....+++|++|++++|.+.+. ..+..+++|++|++++|
T Consensus 21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred HHHHHhcCccccccc--ccccccceeeeeeCCCCccc-ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence 556677777666433 24567788888888888764 33333788888888888888763 47788889999999999
Q ss_pred cCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCC
Q 002350 594 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP 673 (933)
Q Consensus 594 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 673 (933)
++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------------------- 155 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK-------------------- 155 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc--------------------
Confidence 998877777888999999999999999877778889999999999999988655544332
Q ss_pred CccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhh
Q 002350 674 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG 753 (933)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 753 (933)
+++|+.|++++|++++..|..++
T Consensus 156 ---------------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~ 178 (272)
T 3rfs_A 156 ---------------------------------------------------------LTNLTELDLSYNQLQSLPEGVFD 178 (272)
T ss_dssp ---------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTT
T ss_pred ---------------------------------------------------------CccCCEEECCCCCcCccCHHHhc
Confidence 34678899999999987777788
Q ss_pred hccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCC
Q 002350 754 QLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK 823 (933)
Q Consensus 754 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~ 823 (933)
.+++|+.|+|++|++++..|..|+++++|+.|+|++|.+.+.. +.|++++++.|.++|.+|..
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence 9999999999999999888888999999999999999888654 46888999999999999853
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=3e-22 Score=212.23 Aligned_cols=169 Identities=22% Similarity=0.289 Sum_probs=107.4
Q ss_pred CCCcccceeEecCCCCcEEEEecCCCCCCCCCCCCcccccccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCE
Q 002350 70 SDCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKI 149 (933)
Q Consensus 70 ~~~C~w~gv~c~~~~~~V~~l~l~~~~~l~l~~~~~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~ 149 (933)
.++|.|.|+.|.- .+.++.+++++... ..++.. + .+++++|+|++|.+.+..+ ..+.++++|++
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l--------~~ip~~-~--~~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~ 65 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKL--------TAIPSN-I--PADTKKLDLQSNKLSSLPS----KAFHRLTKLRL 65 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCC--------SSCCSC-C--CTTCSEEECCSSCCSCCCT----TSSSSCTTCCE
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCC--------CccCCC-C--CCCCCEEECcCCCCCeeCH----HHhcCCCCCCE
Confidence 4699999999863 23445666665543 122211 1 2467777777777665433 45677777777
Q ss_pred EeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCc
Q 002350 150 LVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQ 229 (933)
Q Consensus 150 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 229 (933)
|++++|.++...+..+.++++|++|++++|++++..+ ..+..+++|++|++++|.+++..+..|+++++|++|++++|.
T Consensus 66 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 66 LYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp EECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc
Confidence 7777777765555556667777777777777665443 455666666666666666666656666666666666666666
Q ss_pred CCCCCchhccCCCCCCEEECCCCcCC
Q 002350 230 LNGSLPSVISNLTSLEYLDLSHNNFE 255 (933)
Q Consensus 230 l~~~~p~~l~~l~~L~~L~L~~n~l~ 255 (933)
+++..+..|..+++|++|++++|.++
T Consensus 145 l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 145 LQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCccCHhHccCCcccceeEecCCcCc
Confidence 66555555666666666666666655
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.6e-22 Score=214.53 Aligned_cols=206 Identities=19% Similarity=0.190 Sum_probs=162.1
Q ss_pred ccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccE
Q 002350 532 LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRF 611 (933)
Q Consensus 532 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 611 (933)
+.++++++.+++++|.++...+.. .+.++.|++++|.+++..+..|..+++|++|++++|.+++..+ . +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCE
Confidence 556777888888888877544333 2678888888888887777888888888888888888885433 2 67888888
Q ss_pred EEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCc
Q 002350 612 LLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSN 691 (933)
Q Consensus 612 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (933)
|++++|+++ .+|..+..+++|+.|++++|++++..|..|.+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-------------------------------------- 122 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-------------------------------------- 122 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------------
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------------------------------------
Confidence 888888888 57777888888888888888888655554433
Q ss_pred cccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccc
Q 002350 692 TMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS 771 (933)
Q Consensus 692 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ 771 (933)
+++|+.|+|++|++++..|..|..+++|+.|+|++|++++.
T Consensus 123 ---------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 123 ---------------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp ---------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred ---------------------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 23677788888888877777778888889999999998877
Q ss_pred cchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccC
Q 002350 772 IPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRT 820 (933)
Q Consensus 772 ~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~ 820 (933)
.+..|.++++|+.|+|++|+++ .+|..+..+..|+.+++++|++.+.+
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 7777788889999999999888 67888888888888888888887755
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.4e-22 Score=214.79 Aligned_cols=205 Identities=23% Similarity=0.213 Sum_probs=176.6
Q ss_pred cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEE
Q 002350 557 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMM 636 (933)
Q Consensus 557 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 636 (933)
.+++++++++++|.++. +|..+. ++++.|++++|++++..+..+..+++|++|+|++|++++..+ . ..+++|+.|
T Consensus 8 ~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEE
T ss_pred ccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEE
Confidence 67899999999999985 555554 689999999999998888999999999999999999996433 3 789999999
Q ss_pred EccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHh
Q 002350 637 DLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIE 716 (933)
Q Consensus 637 ~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 716 (933)
++++|+++ .+|..+..
T Consensus 83 ~Ls~N~l~-~l~~~~~~--------------------------------------------------------------- 98 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQT--------------------------------------------------------------- 98 (290)
T ss_dssp ECCSSCCS-SCCCCTTT---------------------------------------------------------------
T ss_pred ECCCCcCC-cCchhhcc---------------------------------------------------------------
Confidence 99999997 55543322
Q ss_pred hhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccC
Q 002350 717 FAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 796 (933)
Q Consensus 717 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~i 796 (933)
+++|+.|+|++|++++..|..|+.+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..
T Consensus 99 --------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 99 --------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp --------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred --------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence 346888999999999888889999999999999999999988888999999999999999999777
Q ss_pred CcCCcCCCCCCeEEccCCcCcccCCCCCcCCccCcccccCCCCCCCcc
Q 002350 797 PPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWL 844 (933)
Q Consensus 797 p~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gN~~lc~~~ 844 (933)
+..+..+++|++|++++|+++...+.......+....+.||||.|+|.
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCc
Confidence 777899999999999999999544444555567777889999999875
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.7e-23 Score=229.20 Aligned_cols=225 Identities=20% Similarity=0.212 Sum_probs=118.7
Q ss_pred EEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCc----hhhcccC-cCCeEEccCccccccccccccCC-----CC
Q 002350 419 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFF----SEYMNLT-RLRHLYFENNNFSGKIKDGLLSS-----TS 488 (933)
Q Consensus 419 L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~~ 488 (933)
++++.|.+++.+|. +....++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHH-HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46667777655544 33344457777777777666555 4555566 67777777776665555444443 66
Q ss_pred CCEEEccCCcCCCCChhhHhhh----ccccceeecCCCcCCCCcchhc----cC-CCCCCEEEccCCcCccccCcc----
Q 002350 489 LQVLDISNNMLSGHIPHWMGNF----SSELEILSMSKNHLEGNVPVQL----NN-LERLRILDISENRLSGPIASS---- 555 (933)
Q Consensus 489 L~~L~Ls~n~l~~~~p~~l~~~----~~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~L~Ls~n~l~~~~~~~---- 555 (933)
|++|++++|++++..+..+... +.+|++|++++|++++..+..+ .. .++|++|++++|++.+.....
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 6666666666665555544332 1226666666666655444332 22 246666666666655322211
Q ss_pred c-cCC-CCceEEeecCcCcccCchhhc----cC-CCccEEeCcCCcCccc----Cchhhhc-CCCccEEEcCCCcCCCCC
Q 002350 556 L-NLS-SVEHLSLQKNALNGLIPGELF----RS-CKLVTLNLRDNTFSGR----IPHQINE-HSNLRFLLLGGNHLQGPI 623 (933)
Q Consensus 556 ~-~l~-~L~~L~L~~n~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~----~p~~l~~-l~~L~~L~L~~N~l~~~~ 623 (933)
+ ..+ +|++|+|++|++++..+..+. .+ ++|++|+|++|.+++. ++..+.. .++|++|+|++|++++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 1 222 555555555555554443332 22 3555555555555532 2333333 235555555555555433
Q ss_pred ch----hhhcCCCCCEEEccCCcCC
Q 002350 624 PD----QLCQLQKLAMMDLSRNKFS 644 (933)
Q Consensus 624 p~----~l~~l~~L~~L~Ls~N~l~ 644 (933)
+. .+..+++|+.|++++|.+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred HHHHHHHHhcCCCccEEEeccCCcc
Confidence 32 2234455555555555544
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=2.7e-22 Score=212.75 Aligned_cols=204 Identities=22% Similarity=0.259 Sum_probs=139.4
Q ss_pred cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCC
Q 002350 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 593 (933)
Q Consensus 514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 593 (933)
|+.|++++|.++. + ..+..+++|++|++++|++.+. +....+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 43 L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 43 IDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp CCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence 5555555555442 1 1245555666666666665542 22225666666666666666666666677777777777777
Q ss_pred cCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCC
Q 002350 594 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP 673 (933)
Q Consensus 594 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 673 (933)
++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------- 179 (272)
T 3rfs_A 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK-------------------- 179 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------
T ss_pred cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC--------------------
Confidence 777666666777777888888888777666666777788888888888777554443322
Q ss_pred CccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhh
Q 002350 674 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG 753 (933)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 753 (933)
+++|+.|++++|++++..|..++
T Consensus 180 ---------------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~ 202 (272)
T 3rfs_A 180 ---------------------------------------------------------LTQLKDLRLYQNQLKSVPDGVFD 202 (272)
T ss_dssp ---------------------------------------------------------CTTCCEEECCSSCCSCCCTTTTT
T ss_pred ---------------------------------------------------------CccCCEEECCCCcCCccCHHHHh
Confidence 23567788888888877777778
Q ss_pred hccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCC
Q 002350 754 QLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN 804 (933)
Q Consensus 754 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 804 (933)
.+++|+.|+|++|.+.+.. ++|+.|+++.|+++|.+|..++.+.
T Consensus 203 ~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 203 RLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCcccccC
Confidence 8888888888888877543 4678888888888888888777654
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.4e-23 Score=229.49 Aligned_cols=177 Identities=21% Similarity=0.224 Sum_probs=92.0
Q ss_pred EEccCccccccccccccCCCCCCEEEccCCcCCCCCh----hhHhhhccccceeecCCCcCCCCcchhccCC-----CCC
Q 002350 468 LYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIP----HWMGNFSSELEILSMSKNHLEGNVPVQLNNL-----ERL 538 (933)
Q Consensus 468 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L 538 (933)
++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++.+|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566677766666655555557777777777665544 4444444236666666666665555554443 566
Q ss_pred CEEEccCCcCccccCccc-----cC-CCCceEEeecCcCcccCchhhcc-----CCCccEEeCcCCcCcccCc----hhh
Q 002350 539 RILDISENRLSGPIASSL-----NL-SSVEHLSLQKNALNGLIPGELFR-----SCKLVTLNLRDNTFSGRIP----HQI 603 (933)
Q Consensus 539 ~~L~Ls~n~l~~~~~~~~-----~l-~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~~p----~~l 603 (933)
++|++++|++++..+..+ .+ ++|++|++++|.+++..+..+.. .++|++|++++|++++..+ ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 666666666655444322 22 45555555555555444433322 2355555555555553222 222
Q ss_pred hcCC-CccEEEcCCCcCCCCCchhhh----cC-CCCCEEEccCCcCC
Q 002350 604 NEHS-NLRFLLLGGNHLQGPIPDQLC----QL-QKLAMMDLSRNKFS 644 (933)
Q Consensus 604 ~~l~-~L~~L~L~~N~l~~~~p~~l~----~l-~~L~~L~Ls~N~l~ 644 (933)
..++ +|++|+|++|++++..+..+. .+ ++|+.||+++|.++
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 3333 555555555555544433222 22 35555555555544
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.5e-23 Score=234.87 Aligned_cols=243 Identities=18% Similarity=0.244 Sum_probs=163.0
Q ss_pred hHhhhccccceeecCCCcCCCCc----chhccCCCCCCEEEccCCc---CccccCccc--------cCCCCceEEeecCc
Q 002350 506 WMGNFSSELEILSMSKNHLEGNV----PVQLNNLERLRILDISENR---LSGPIASSL--------NLSSVEHLSLQKNA 570 (933)
Q Consensus 506 ~l~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~--------~l~~L~~L~L~~n~ 570 (933)
.+..++. |+.|++++|.+++.. +..+..+++|+.|++++|. +.+.+|..+ .+++|++|+|++|.
T Consensus 27 ~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 27 VLLEDDS-VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHCSC-CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHhcCCC-ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 3333333 445555554444332 2224455666666666542 223333211 45667777777777
Q ss_pred Ccc----cCchhhccCCCccEEeCcCCcCcccCchhh----hcC---------CCccEEEcCCCcCC-CCCc---hhhhc
Q 002350 571 LNG----LIPGELFRSCKLVTLNLRDNTFSGRIPHQI----NEH---------SNLRFLLLGGNHLQ-GPIP---DQLCQ 629 (933)
Q Consensus 571 l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l----~~l---------~~L~~L~L~~N~l~-~~~p---~~l~~ 629 (933)
+.+ .+|..+..+++|++|+|++|.+++..+..+ ..+ ++|++|++++|+++ +.+| ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 765 356677788888888888888865444333 333 78888888888887 3444 46778
Q ss_pred CCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhc
Q 002350 630 LQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAI 709 (933)
Q Consensus 630 l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 709 (933)
+++|+.|++++|+++. ..+..+. .
T Consensus 186 ~~~L~~L~L~~n~l~~---~g~~~l~---------------------------------------------~-------- 209 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRP---EGIEHLL---------------------------------------------L-------- 209 (386)
T ss_dssp CTTCCEEECCSSCCCH---HHHHHHH---------------------------------------------H--------
T ss_pred CCCcCEEECcCCCCCH---hHHHHHH---------------------------------------------H--------
Confidence 8889999998888761 0000000 0
Q ss_pred hhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCC----CCCChhhhhccccCeeeccccccccc----cchhcc--CC
Q 002350 710 DERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT----GEIPSDIGQLQAILALNLSNNSLSGS----IPESFS--NL 779 (933)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----g~ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~--~l 779 (933)
.....+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +|..+. ++
T Consensus 210 ----------------~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 273 (386)
T 2ca6_A 210 ----------------EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273 (386)
T ss_dssp ----------------TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSS
T ss_pred ----------------HHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccC
Confidence 00012457888999999986 57888888899999999999999876 677774 48
Q ss_pred CCCCEEECcCCeecc----cCCcCC-cCCCCCCeEEccCCcCcccCC
Q 002350 780 KMIESLDISYNKLTG----QIPPQL-TALNFLSIFNVSYNNLSGRTP 821 (933)
Q Consensus 780 ~~L~~LdLs~N~l~~----~ip~~l-~~l~~L~~L~ls~N~l~g~~p 821 (933)
++|++|+|++|++++ .+|..+ .++++|++|++++|++++..|
T Consensus 274 ~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 999999999999998 588777 668999999999999987664
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.5e-21 Score=204.31 Aligned_cols=183 Identities=19% Similarity=0.239 Sum_probs=146.3
Q ss_pred CCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEcc
Q 002350 560 SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS 639 (933)
Q Consensus 560 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 639 (933)
..++++++++.++ .+|..+. ++++.|++++|++++..+..+..+++|++|+|++|++++..|..|..+++|+.|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4455666666665 3344443 477888888888887777778888888888888888888777778888888888888
Q ss_pred CCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhh
Q 002350 640 RNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAM 719 (933)
Q Consensus 640 ~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 719 (933)
+|++++..|..+..
T Consensus 92 ~n~l~~~~~~~~~~------------------------------------------------------------------ 105 (251)
T 3m19_A 92 NNQLASLPLGVFDH------------------------------------------------------------------ 105 (251)
T ss_dssp TSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred CCcccccChhHhcc------------------------------------------------------------------
Confidence 88887554443332
Q ss_pred ccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcC
Q 002350 720 KNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ 799 (933)
Q Consensus 720 ~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~ 799 (933)
+++|+.|+|++|++++..+..++.+++|+.|+|++|++++..|..|+++++|++|||++|++++..|..
T Consensus 106 -----------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 174 (251)
T 3m19_A 106 -----------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174 (251)
T ss_dssp -----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred -----------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence 346778899999998777777888999999999999999888888999999999999999999888888
Q ss_pred CcCCCCCCeEEccCCcCcccCCC
Q 002350 800 LTALNFLSIFNVSYNNLSGRTPD 822 (933)
Q Consensus 800 l~~l~~L~~L~ls~N~l~g~~p~ 822 (933)
+..+++|++|++++|++++..+.
T Consensus 175 ~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 175 FDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp TTTCTTCCEEECCSCCBCTTSTT
T ss_pred HhCCCCCCEEEeeCCceeCCccc
Confidence 99999999999999999887543
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=6e-22 Score=214.50 Aligned_cols=80 Identities=26% Similarity=0.357 Sum_probs=50.3
Q ss_pred cccEEEcCCCcCCCCCChhhhhc---cccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeE
Q 002350 733 RVTGLDLSCNQLTGEIPSDIGQL---QAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIF 809 (933)
Q Consensus 733 ~L~~LdLs~N~l~g~ip~~l~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L 809 (933)
+|+.|||++|++++.+|..++.+ ++|++|+|++|+++ .+|..+. ++|++|||++|++++. |. +..++.|+.|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 299 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL 299 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence 45556666666665555555554 46666667766666 4555553 5777777777777753 32 4566777777
Q ss_pred EccCCcCc
Q 002350 810 NVSYNNLS 817 (933)
Q Consensus 810 ~ls~N~l~ 817 (933)
++++|+++
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 77777765
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=3.4e-22 Score=219.51 Aligned_cols=249 Identities=18% Similarity=0.228 Sum_probs=192.9
Q ss_pred CCCEEEccCCcCCCCChhhHhhh--ccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccc-cCccc-cCCCCce
Q 002350 488 SLQVLDISNNMLSGHIPHWMGNF--SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP-IASSL-NLSSVEH 563 (933)
Q Consensus 488 ~L~~L~Ls~n~l~~~~p~~l~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~-~l~~L~~ 563 (933)
.++.++++++.+. +..+..+ .. ++.|++++|.+.+..+. +..+++|+.|++++|.+++. ++..+ .+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~-l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQG-VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTT-CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHHHhhhhcc-ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4677888887765 4455554 44 88888888888876655 55788999999999988765 55555 7889999
Q ss_pred EEeecCcCcccCchhhccCCCccEEeCcCC-cCccc-CchhhhcCCCccEEEcCCC-cCCCC-CchhhhcCC-CCCEEEc
Q 002350 564 LSLQKNALNGLIPGELFRSCKLVTLNLRDN-TFSGR-IPHQINEHSNLRFLLLGGN-HLQGP-IPDQLCQLQ-KLAMMDL 638 (933)
Q Consensus 564 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~L 638 (933)
|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+.|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999988888888889999999999999 67753 6777889999999999999 88864 577788999 9999999
Q ss_pred cCCc--CC-CCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHH
Q 002350 639 SRNK--FS-GSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEI 715 (933)
Q Consensus 639 s~N~--l~-g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 715 (933)
++|. ++ +.+|..+.
T Consensus 203 ~~~~~~~~~~~l~~~~~--------------------------------------------------------------- 219 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVR--------------------------------------------------------------- 219 (336)
T ss_dssp CSCGGGSCHHHHHHHHH---------------------------------------------------------------
T ss_pred CCCcccCCHHHHHHHHh---------------------------------------------------------------
Confidence 9994 33 11121111
Q ss_pred hhhhccceeeecCCCCCcccEEEcCCCc-CCCCCChhhhhccccCeeeccccc-cccccchhccCCCCCCEEECcCCeec
Q 002350 716 EFAMKNRYEIYNGSNVNRVTGLDLSCNQ-LTGEIPSDIGQLQAILALNLSNNS-LSGSIPESFSNLKMIESLDISYNKLT 793 (933)
Q Consensus 716 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~g~ip~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~ 793 (933)
.+++|+.|++++|. +++..+..+..+++|+.|++++|. ++......++++++|+.|++++| ++
T Consensus 220 --------------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 220 --------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp --------------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred --------------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence 24578899999999 788888899999999999999995 33332336889999999999999 33
Q ss_pred ccCCcCCcCC-CCCCeEEccCCcCcccCCC
Q 002350 794 GQIPPQLTAL-NFLSIFNVSYNNLSGRTPD 822 (933)
Q Consensus 794 ~~ip~~l~~l-~~L~~L~ls~N~l~g~~p~ 822 (933)
. ..+..+ ..+..|++++|++++..|.
T Consensus 285 ~---~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 285 D---GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp T---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred H---HHHHHHHhhCcceEEecccCccccCC
Confidence 2 234444 3477888999999998884
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.2e-21 Score=214.97 Aligned_cols=197 Identities=19% Similarity=0.215 Sum_probs=126.0
Q ss_pred CCEEECcCCcCCCcCchhhccc--CcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCC-ChhhHhhhcccccee
Q 002350 441 LELLDLSNNNFEGQFFSEYMNL--TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGH-IPHWMGNFSSELEIL 517 (933)
Q Consensus 441 L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~~~~~L~~L 517 (933)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..++. |++|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~-L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSK-LQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCC-CSEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCC-CCEE
Confidence 445555555443 2333334 5666666666666654443 44566777777777766544 5555555555 7777
Q ss_pred ecCCCcCCCCcchhccCCCCCCEEEccCC-cCccc-cCccc-cCCCCceEEeecC-cCccc-CchhhccCC-CccEEeCc
Q 002350 518 SMSKNHLEGNVPVQLNNLERLRILDISEN-RLSGP-IASSL-NLSSVEHLSLQKN-ALNGL-IPGELFRSC-KLVTLNLR 591 (933)
Q Consensus 518 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~-~l~~L~~L~L~~n-~l~~~-~p~~~~~l~-~L~~L~Ls 591 (933)
++++|.+++..+..+..+++|++|++++| .+++. ++..+ .+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 77777776666666777777777777777 45542 33333 5667777777777 66543 455666777 77777777
Q ss_pred CC--cCc-ccCchhhhcCCCccEEEcCCCc-CCCCCchhhhcCCCCCEEEccCCc
Q 002350 592 DN--TFS-GRIPHQINEHSNLRFLLLGGNH-LQGPIPDQLCQLQKLAMMDLSRNK 642 (933)
Q Consensus 592 ~N--~l~-~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~Ls~N~ 642 (933)
+| .++ +.+|..+..+++|++|++++|. +++..+..+.++++|+.|++++|.
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 77 444 4456666777777777777777 665666677777777777777775
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.6e-22 Score=226.57 Aligned_cols=248 Identities=18% Similarity=0.233 Sum_probs=153.9
Q ss_pred CChhhhhcCCCccEEEccCCCCCCCcc----ccccCCCCCCEEEcCCCcC---CCCcchhhhcCCCCCCEEECcCCcCCC
Q 002350 381 LPHNMGVILQKLMYMDISKNCFEGNIP----YSAGEMKELSLLDLSRNYF---SGGLSQSVVTGCFSLELLDLSNNNFEG 453 (933)
Q Consensus 381 ~p~~~~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l---~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 453 (933)
++..+. .+++|++|++++|.+.+..+ ..+..+++|++|+|++|.+ .+.+|..+.
T Consensus 24 l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~------------------ 84 (386)
T 2ca6_A 24 VFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR------------------ 84 (386)
T ss_dssp TSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH------------------
T ss_pred HHHHHh-cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH------------------
Confidence 344443 35666666666666654422 2344566666666666432 223333220
Q ss_pred cCchhhcccCcCCeEEccCccccc----cccccccCCCCCCEEEccCCcCCCCChhhHhh----h---------ccccce
Q 002350 454 QFFSEYMNLTRLRHLYFENNNFSG----KIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN----F---------SSELEI 516 (933)
Q Consensus 454 ~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~----~---------~~~L~~ 516 (933)
.+...+..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+.. + +. |++
T Consensus 85 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~-L~~ 163 (386)
T 2ca6_A 85 LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP-LRS 163 (386)
T ss_dssp HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC-CCE
T ss_pred HHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC-CcE
Confidence 000112344555555555555544 24444555556666666666554322222222 2 33 777
Q ss_pred eecCCCcCC-CCcc---hhccCCCCCCEEEccCCcCcc-----ccCccc-cCCCCceEEeecCcCc----ccCchhhccC
Q 002350 517 LSMSKNHLE-GNVP---VQLNNLERLRILDISENRLSG-----PIASSL-NLSSVEHLSLQKNALN----GLIPGELFRS 582 (933)
Q Consensus 517 L~L~~n~l~-~~~~---~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~-~l~~L~~L~L~~n~l~----~~~p~~~~~l 582 (933)
|++++|+++ +.++ ..+..+++|+.|++++|++.. ..+..+ .+++|++|+|++|.++ +.+|..+..+
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 777777765 2333 355667777778887777762 233233 6778888888888875 5677788888
Q ss_pred CCccEEeCcCCcCccc----Cchhhhc--CCCccEEEcCCCcCCC----CCchhh-hcCCCCCEEEccCCcCCCCCC
Q 002350 583 CKLVTLNLRDNTFSGR----IPHQINE--HSNLRFLLLGGNHLQG----PIPDQL-CQLQKLAMMDLSRNKFSGSIP 648 (933)
Q Consensus 583 ~~L~~L~Ls~N~l~~~----~p~~l~~--l~~L~~L~L~~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~g~~p 648 (933)
++|++|+|++|++++. +|..+.. +++|++|+|++|++++ .+|..+ .++++|+.|++++|++++..|
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 9999999999998865 5666643 8899999999999987 477777 668999999999999987664
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=212.06 Aligned_cols=223 Identities=22% Similarity=0.296 Sum_probs=171.2
Q ss_pred CCCEEEccCCcCccc----cCccccCCCCceEEeecCcCcccCchhh--ccCCCccEEeCcCCcCcccCc----hhhhcC
Q 002350 537 RLRILDISENRLSGP----IASSLNLSSVEHLSLQKNALNGLIPGEL--FRSCKLVTLNLRDNTFSGRIP----HQINEH 606 (933)
Q Consensus 537 ~L~~L~Ls~n~l~~~----~~~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~l~~l 606 (933)
.++.+.+.++.+... +.....+++|++|++++|.+.+..|..+ ..+++|++|++++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 355666666655421 1112245668888888888888888777 778888899999988887555 344578
Q ss_pred CCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCC--CCchhhhhhccccCCCCccCCCCCCCCCccchhhcccC
Q 002350 607 SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS--IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSL 684 (933)
Q Consensus 607 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~--~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (933)
++|++|+|++|++++..|..+..+++|++|++++|++.+. ++...
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------------- 191 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL--------------------------------- 191 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS---------------------------------
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHH---------------------------------
Confidence 8999999999999988888999999999999999997632 10000
Q ss_pred CCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCCh----hhhhccccCe
Q 002350 685 GNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPS----DIGQLQAILA 760 (933)
Q Consensus 685 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~----~l~~l~~L~~ 760 (933)
....+++|+.|+|++|+++ .+|. .++.+++|++
T Consensus 192 ------------------------------------------~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 192 ------------------------------------------CPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHS 228 (310)
T ss_dssp ------------------------------------------CTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSS
T ss_pred ------------------------------------------hhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCE
Confidence 0012457888999999997 3343 2578899999
Q ss_pred eeccccccccccchhccCC---CCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCCCcCCccCcccccCC
Q 002350 761 LNLSNNSLSGSIPESFSNL---KMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGN 837 (933)
Q Consensus 761 L~Ls~N~l~~~~p~~~~~l---~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gN 837 (933)
|+|++|++++.+|..++.+ ++|++|+|++|+++ .+|..+. ++|+.||+++|++++. |....+..+....+.||
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGN 304 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSST
T ss_pred EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCC
Confidence 9999999999989888887 69999999999999 7888775 8999999999999984 44456677777788888
Q ss_pred CC
Q 002350 838 PS 839 (933)
Q Consensus 838 ~~ 839 (933)
+.
T Consensus 305 ~l 306 (310)
T 4glp_A 305 PF 306 (310)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=7.3e-21 Score=197.64 Aligned_cols=78 Identities=22% Similarity=0.216 Sum_probs=42.3
Q ss_pred ccc-EEEcCCCcCCCCCChhhhhccccCeeeccccc-cccccchhccCC-CCCCEEECcCCeecccCCcCCcCCCCCCeE
Q 002350 733 RVT-GLDLSCNQLTGEIPSDIGQLQAILALNLSNNS-LSGSIPESFSNL-KMIESLDISYNKLTGQIPPQLTALNFLSIF 809 (933)
Q Consensus 733 ~L~-~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L 809 (933)
+|+ .|++++|+++ .+|......++|+.|+|++|+ +++..+..|+++ ++|+.||+++|++++ +|.. .++.|+.|
T Consensus 156 ~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L 231 (239)
T 2xwt_C 156 NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKEL 231 (239)
T ss_dssp SSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEE
T ss_pred cceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCcee
Confidence 344 5555555555 333332222556666666663 665555556666 666666666666663 3332 45556666
Q ss_pred EccCC
Q 002350 810 NVSYN 814 (933)
Q Consensus 810 ~ls~N 814 (933)
+++++
T Consensus 232 ~l~~~ 236 (239)
T 2xwt_C 232 IARNT 236 (239)
T ss_dssp ECTTC
T ss_pred eccCc
Confidence 66554
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1e-20 Score=204.20 Aligned_cols=193 Identities=19% Similarity=0.323 Sum_probs=110.6
Q ss_pred CCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEE
Q 002350 534 NLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLL 613 (933)
Q Consensus 534 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 613 (933)
.+++|+.|++++|.+... +....+++|++|++++|.+.+..+ +..+++|++|++++|++++ ++ .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence 445555555555555432 222255556666666665554332 5566666666666666653 22 455666666666
Q ss_pred cCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccc
Q 002350 614 LGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTM 693 (933)
Q Consensus 614 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (933)
+++|++++. +. +..+++|+.|++++|++++..+ +.
T Consensus 114 l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~----------------------------------------- 148 (308)
T 1h6u_A 114 LTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LA----------------------------------------- 148 (308)
T ss_dssp CTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GG-----------------------------------------
T ss_pred CCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--cc-----------------------------------------
Confidence 666666642 22 6666666666666666653221 11
Q ss_pred cchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccc
Q 002350 694 FGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP 773 (933)
Q Consensus 694 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p 773 (933)
.+++|+.|++++|++++ +|. +..+++|+.|++++|++++..+
T Consensus 149 ------------------------------------~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 149 ------------------------------------GLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp ------------------------------------GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred ------------------------------------CCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh
Confidence 12345566666666664 332 6666666666666666665433
Q ss_pred hhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcc
Q 002350 774 ESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 818 (933)
Q Consensus 774 ~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 818 (933)
+..+++|++|+|++|++++..| +..+++|+.|++++|++++
T Consensus 191 --l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 191 --LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred --hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 6666666666666666664432 5666666666666666654
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=4.4e-20 Score=193.14 Aligned_cols=181 Identities=21% Similarity=0.236 Sum_probs=146.7
Q ss_pred CCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCC
Q 002350 537 RLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 616 (933)
Q Consensus 537 ~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 616 (933)
..+.++++++.++...+. + .+.++.|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|++|+|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~-~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG-I-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSC-C-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCC-C-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 455666666666543322 2 25677778888888777777888888899999999998888888888889999999999
Q ss_pred CcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccch
Q 002350 617 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGM 696 (933)
Q Consensus 617 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (933)
|++++..+..|..+++|++|++++|++++..+..+..
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------------------------------------- 129 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR------------------------------------------- 129 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc-------------------------------------------
Confidence 9999877788889999999999999988554443332
Q ss_pred hhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhc
Q 002350 697 WRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESF 776 (933)
Q Consensus 697 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 776 (933)
+++|+.|+|++|++++..|..++.+++|++|+|++|++++..|..|
T Consensus 130 ----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 130 ----------------------------------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp ----------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ----------------------------------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence 3467889999999997777789999999999999999998888899
Q ss_pred cCCCCCCEEECcCCeecccC
Q 002350 777 SNLKMIESLDISYNKLTGQI 796 (933)
Q Consensus 777 ~~l~~L~~LdLs~N~l~~~i 796 (933)
.++++|+.|+|++|.+++..
T Consensus 176 ~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 176 DRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp TTCTTCCEEECCSCCBCTTS
T ss_pred hCCCCCCEEEeeCCceeCCc
Confidence 99999999999999998653
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=4.3e-20 Score=199.31 Aligned_cols=189 Identities=22% Similarity=0.351 Sum_probs=134.2
Q ss_pred cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCC
Q 002350 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 593 (933)
Q Consensus 514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 593 (933)
|+.|++++|.++. ++ .+..+++|+.|++++|++.+..+ ...+++|++|++++|.+++. ..+..+++|++|++++|
T Consensus 43 L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 43 ITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 117 (308)
T ss_dssp CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTS
T ss_pred cCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCC
Confidence 6666666665553 23 35556666666666666655444 23666677777777766643 35777788888888888
Q ss_pred cCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCC
Q 002350 594 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP 673 (933)
Q Consensus 594 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 673 (933)
++++. + .+..+++|++|++++|++++..+ +..+++|+.|++++|++++..+ +.
T Consensus 118 ~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~--------------------- 170 (308)
T 1h6u_A 118 QITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LA--------------------- 170 (308)
T ss_dssp CCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT---------------------
T ss_pred CCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hc---------------------
Confidence 88753 3 37788888888888888876443 7788888888888888874222 21
Q ss_pred CccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhh
Q 002350 674 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG 753 (933)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 753 (933)
.+++|+.|++++|++++..| +.
T Consensus 171 --------------------------------------------------------~l~~L~~L~l~~n~l~~~~~--l~ 192 (308)
T 1h6u_A 171 --------------------------------------------------------NLSKLTTLKADDNKISDISP--LA 192 (308)
T ss_dssp --------------------------------------------------------TCTTCCEEECCSSCCCCCGG--GG
T ss_pred --------------------------------------------------------CCCCCCEEECCCCccCcChh--hc
Confidence 23467788888888885433 78
Q ss_pred hccccCeeeccccccccccchhccCCCCCCEEECcCCeecc
Q 002350 754 QLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG 794 (933)
Q Consensus 754 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~ 794 (933)
.+++|+.|+|++|++++..| +..+++|+.|+|++|++++
T Consensus 193 ~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 88899999999999986654 8889999999999999974
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=9.4e-21 Score=196.78 Aligned_cols=201 Identities=16% Similarity=0.173 Sum_probs=160.9
Q ss_pred CCCCceEEeecCcCcccCchhhccCCCccEEeCcCCc-CcccCchhhhcCCCccEEEcCC-CcCCCCCchhhhcCCCCCE
Q 002350 558 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNT-FSGRIPHQINEHSNLRFLLLGG-NHLQGPIPDQLCQLQKLAM 635 (933)
Q Consensus 558 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~ 635 (933)
.+++++|++++|++++..+..|..+++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|+.
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3478888888888887777788888999999999997 8766667888899999999998 8998777788899999999
Q ss_pred EEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHH
Q 002350 636 MDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEI 715 (933)
Q Consensus 636 L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 715 (933)
|++++|++++ +|. +..+.
T Consensus 110 L~l~~n~l~~-lp~-~~~l~------------------------------------------------------------ 127 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVY------------------------------------------------------------ 127 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCC------------------------------------------------------------
T ss_pred EeCCCCCCcc-ccc-ccccc------------------------------------------------------------
Confidence 9999999885 554 43321
Q ss_pred hhhhccceeeecCCCCCcccEEEcCCC-cCCCCCChhhhhccccC-eeeccccccccccchhccCCCCCCEEECcCCe-e
Q 002350 716 EFAMKNRYEIYNGSNVNRVTGLDLSCN-QLTGEIPSDIGQLQAIL-ALNLSNNSLSGSIPESFSNLKMIESLDISYNK-L 792 (933)
Q Consensus 716 ~~~~~~~~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~-l 792 (933)
.+..|+.|++++| ++++..+..|..+++|+ .|++++|+++...+..|.. ++|+.|+|++|+ +
T Consensus 128 --------------~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 128 --------------STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYL 192 (239)
T ss_dssp --------------BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTC
T ss_pred --------------ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCc
Confidence 1123458999999 99977777899999999 9999999999444445555 899999999995 9
Q ss_pred cccCCcCCcCC-CCCCeEEccCCcCcccCCCCCcCCccCcccccCC
Q 002350 793 TGQIPPQLTAL-NFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGN 837 (933)
Q Consensus 793 ~~~ip~~l~~l-~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gN 837 (933)
++..+..+..+ ++|+.||+++|++++..+ . .|..+....+.++
T Consensus 193 ~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~-~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 193 TVIDKDAFGGVYSGPSLLDVSQTSVTALPS-K-GLEHLKELIARNT 236 (239)
T ss_dssp CEECTTTTTTCSBCCSEEECTTCCCCCCCC-T-TCTTCSEEECTTC
T ss_pred ccCCHHHhhccccCCcEEECCCCccccCCh-h-HhccCceeeccCc
Confidence 98888889999 999999999999986443 3 4555555554444
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=6.9e-20 Score=185.76 Aligned_cols=136 Identities=29% Similarity=0.293 Sum_probs=107.1
Q ss_pred CCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCC
Q 002350 116 LEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKN 195 (933)
Q Consensus 116 l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~ 195 (933)
.++|++|++++|.+.+..+ ..+.++++|++|++++|.+++..+..+..+++|++|++++|++++..+ ..+..+++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~ 101 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPN----GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQ 101 (208)
T ss_dssp CTTCSEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred CCCCcEEEcCCCccCcCCh----hhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH-hHhcCccC
Confidence 4578899999988875444 567888888888888888887777777888888888888888876544 55778888
Q ss_pred CCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCC
Q 002350 196 LFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG 256 (933)
Q Consensus 196 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 256 (933)
|++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 102 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 8888888888887666677888888888888888886666667788888888888887654
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=1.6e-19 Score=208.93 Aligned_cols=113 Identities=22% Similarity=0.388 Sum_probs=51.7
Q ss_pred cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCC
Q 002350 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 593 (933)
Q Consensus 514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 593 (933)
++.|++++|.+++ +|..+ .++|+.|++++|+++ .+| -.+++|++|++++|++++ +|. +.. +|++|++++|
T Consensus 61 L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 61 FSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp CSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred ccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence 5555555555553 33333 144555555555554 222 123445555555555544 333 322 4555555555
Q ss_pred cCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCC
Q 002350 594 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 644 (933)
Q Consensus 594 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 644 (933)
++++ +|. .+++|+.|+|++|++++ +|. .+++|+.|++++|+++
T Consensus 131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 131 QLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred cCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 5543 333 34445555555555443 332 2344455555555444
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=4.9e-19 Score=194.94 Aligned_cols=239 Identities=16% Similarity=0.146 Sum_probs=167.1
Q ss_pred CEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCc-cc-cCCCCce-EEe
Q 002350 490 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIAS-SL-NLSSVEH-LSL 566 (933)
Q Consensus 490 ~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~-~l~~L~~-L~L 566 (933)
++++.++++++ .+|..+ +.++++|+|++|+++...+.+|.++++|++|+|++|++.+.++. .+ +++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45667777776 666544 34488888888888855556788888888888888888765554 44 6777665 556
Q ss_pred ecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCC-CcCCCCCchhhhcCC-CCCEEEccCCcCC
Q 002350 567 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG-NHLQGPIPDQLCQLQ-KLAMMDLSRNKFS 644 (933)
Q Consensus 567 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~ 644 (933)
..|++++..|..|..+++|++|++++|++++..+..+....++..|++.+ +++....+..|..+. .++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 67888888788888888888999988888876666666667778888855 566655555666664 5788899988887
Q ss_pred CCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhcccee
Q 002350 645 GSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE 724 (933)
Q Consensus 645 g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 724 (933)
. +|.....
T Consensus 168 ~-i~~~~f~----------------------------------------------------------------------- 175 (350)
T 4ay9_X 168 E-IHNSAFN----------------------------------------------------------------------- 175 (350)
T ss_dssp E-ECTTSST-----------------------------------------------------------------------
T ss_pred C-CChhhcc-----------------------------------------------------------------------
Confidence 3 3322111
Q ss_pred eecCCCCCcccEEEcCC-CcCCCCCC-hhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcC
Q 002350 725 IYNGSNVNRVTGLDLSC-NQLTGEIP-SDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTA 802 (933)
Q Consensus 725 ~~~~~~l~~L~~LdLs~-N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~ 802 (933)
..+++.|++++ |.++ .+| ..|+.+++|++|||++|+|+...+..|. +|+.|.+.++.--..+| .+..
T Consensus 176 ------~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~ 244 (350)
T 4ay9_X 176 ------GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEK 244 (350)
T ss_dssp ------TEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTT
T ss_pred ------ccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-Cchh
Confidence 12466788875 5555 555 4578889999999999999865554444 45555554444344677 4788
Q ss_pred CCCCCeEEccCCc
Q 002350 803 LNFLSIFNVSYNN 815 (933)
Q Consensus 803 l~~L~~L~ls~N~ 815 (933)
+++|+.++++++.
T Consensus 245 l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 245 LVALMEASLTYPS 257 (350)
T ss_dssp CCSCCEEECSCHH
T ss_pred CcChhhCcCCCCc
Confidence 8889999988763
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=3.9e-19 Score=180.22 Aligned_cols=86 Identities=26% Similarity=0.286 Sum_probs=36.9
Q ss_pred CCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEc
Q 002350 559 SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDL 638 (933)
Q Consensus 559 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 638 (933)
++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence 33333333333333333333344444444444444444333333444444444444444444433333444444444444
Q ss_pred cCCcCC
Q 002350 639 SRNKFS 644 (933)
Q Consensus 639 s~N~l~ 644 (933)
++|+++
T Consensus 132 ~~N~l~ 137 (208)
T 2o6s_A 132 YQNQLK 137 (208)
T ss_dssp CSSCCS
T ss_pred CCCccc
Confidence 444444
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=1.6e-18 Score=190.80 Aligned_cols=241 Identities=15% Similarity=0.101 Sum_probs=148.4
Q ss_pred cEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCE-EEC
Q 002350 368 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLEL-LDL 446 (933)
Q Consensus 368 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~-L~L 446 (933)
++++.++++++ ++|..+ .+++++|+|++|.++...+.+|.++++|++|+|++|++.+.++...|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666666666 666654 3567777777777764434456667777777777776665566555555555443 344
Q ss_pred cCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCC-CcCC
Q 002350 447 SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSK-NHLE 525 (933)
Q Consensus 447 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~-n~l~ 525 (933)
..|++....+..|..+++|++|++++|+++...+..+....+ +..+++.+ +++.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-------------------------l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-------------------------KVLLDIQDNINIH 142 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSS-------------------------CEEEEEESCTTCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccch-------------------------hhhhhhccccccc
Confidence 445555544445555555555555555554333333333333 44444433 3344
Q ss_pred CCcchhccCCC-CCCEEEccCCcCccccCccccCCCCceEEeec-CcCcccCchhhccCCCccEEeCcCCcCcccCchhh
Q 002350 526 GNVPVQLNNLE-RLRILDISENRLSGPIASSLNLSSVEHLSLQK-NALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI 603 (933)
Q Consensus 526 ~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 603 (933)
...+..|..+. .++.|++++|+++...+..+...+|+++++.+ |.++.+.+..|..+++|++||+++|+++...+..
T Consensus 143 ~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~- 221 (350)
T 4ay9_X 143 TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG- 221 (350)
T ss_dssp EECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS-
T ss_pred cccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh-
Confidence 33334455543 57778888888877666666667788888875 4555444456788899999999999998543333
Q ss_pred hcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCC
Q 002350 604 NEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 641 (933)
Q Consensus 604 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 641 (933)
+.+|+.|.+.++.-...+| .+..+++|+.++++++
T Consensus 222 --~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 --LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp --CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred --hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4566777766655445677 4888999999998754
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=177.45 Aligned_cols=156 Identities=21% Similarity=0.260 Sum_probs=123.8
Q ss_pred cEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCc-hhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCc
Q 002350 586 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV 664 (933)
Q Consensus 586 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~ 664 (933)
+.+++++|.++ .+|..+. ..+++|+|++|++++..| ..|..+++|+.|++++|++++..|..|.+
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 46777777766 3555443 345777777777776544 44777888888888888877554444432
Q ss_pred cCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcC
Q 002350 665 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL 744 (933)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 744 (933)
+++|+.|+|++|++
T Consensus 80 ------------------------------------------------------------------l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 80 ------------------------------------------------------------------ASGVNEILLTSNRL 93 (220)
T ss_dssp ------------------------------------------------------------------CTTCCEEECCSSCC
T ss_pred ------------------------------------------------------------------CCCCCEEECCCCcc
Confidence 33577788888888
Q ss_pred CCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCC
Q 002350 745 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 821 (933)
Q Consensus 745 ~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p 821 (933)
++..|..|+.+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+..+++|++|++++|+++|.++
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 87777788899999999999999999889999999999999999999999999999999999999999999998776
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=1.7e-18 Score=200.22 Aligned_cols=186 Identities=26% Similarity=0.355 Sum_probs=98.0
Q ss_pred CCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEc
Q 002350 415 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 494 (933)
Q Consensus 415 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 494 (933)
+++.|++++|.+++ +|..++ ++|++|++++|.++. +| ..+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 67777777777663 555432 556666666666662 33 235666666666666664 444 333 5666666
Q ss_pred cCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCccc
Q 002350 495 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 574 (933)
Q Consensus 495 s~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~ 574 (933)
++|++++ +|. .++. |+.|++++|++++ +|. .+++|+.|++++|++++ +|. +. ++|+.|+|++|+++ .
T Consensus 128 s~N~l~~-lp~---~l~~-L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPAL-LEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC-CCC---CCTT-CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCSSCCS-S
T ss_pred CCCcCCC-CCC---cCcc-ccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-CCCCEEECcCCCCC-c
Confidence 6666653 444 2223 6666666666554 333 34555555555555554 333 32 55555555555555 3
Q ss_pred CchhhccCCCc-------cEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhc
Q 002350 575 IPGELFRSCKL-------VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 629 (933)
Q Consensus 575 ~p~~~~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 629 (933)
+|. +.. +| +.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|..+..
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 333 322 34 55555555555 34444444555555555555555555544444
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=2.6e-18 Score=175.37 Aligned_cols=156 Identities=21% Similarity=0.264 Sum_probs=115.9
Q ss_pred cEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCcc
Q 002350 586 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVL 665 (933)
Q Consensus 586 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~ 665 (933)
+.++++++.++ .+|..+. ++|++|++++|++++..+..|..+++|+.|++++|++++..|..|.+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 45666666665 4454443 46777777777777666666777777777777777776555554433
Q ss_pred CCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCC
Q 002350 666 NGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT 745 (933)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 745 (933)
+++|+.|||++|+++
T Consensus 79 -----------------------------------------------------------------l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 79 -----------------------------------------------------------------LRSLNSLVLYGNKIT 93 (220)
T ss_dssp -----------------------------------------------------------------CSSCCEEECCSSCCC
T ss_pred -----------------------------------------------------------------CcCCCEEECCCCcCC
Confidence 235666778888877
Q ss_pred CCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCC
Q 002350 746 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 821 (933)
Q Consensus 746 g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p 821 (933)
+..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..+..+++|++|++++|++.+.++
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 5555557788888899999999988888889999999999999999998888888889999999999998877554
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.6e-17 Score=170.65 Aligned_cols=160 Identities=24% Similarity=0.195 Sum_probs=134.9
Q ss_pred CCCcccceeEecCCCCcEEEEecCCCCCCCCCCCCcccccccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCE
Q 002350 70 SDCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKI 149 (933)
Q Consensus 70 ~~~C~w~gv~c~~~~~~V~~l~l~~~~~l~l~~~~~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~ 149 (933)
.+.|+|++|.|.... + ..++.. -.++|++|+|++|.+.+..+ ..+..+++|++
T Consensus 16 ~~~Cs~~~v~c~~~~--l------------------~~ip~~---~~~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~ 68 (229)
T 3e6j_A 16 QCSCSGTTVDCRSKR--H------------------ASVPAG---IPTNAQILYLHDNQITKLEP----GVFDSLINLKE 68 (229)
T ss_dssp TCEEETTEEECTTSC--C------------------SSCCSC---CCTTCSEEECCSSCCCCCCT----TTTTTCTTCCE
T ss_pred CCEEeCCEeEccCCC--c------------------CccCCC---CCCCCCEEEcCCCccCccCH----HHhhCccCCcE
Confidence 568999999997421 0 112111 13789999999999988666 77899999999
Q ss_pred EeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCc
Q 002350 150 LVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQ 229 (933)
Q Consensus 150 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 229 (933)
|+|++|.++...+..+..+++|++|+|++|++++..+ ..+..+++|++|+|++|.++ .+|..+.++++|++|+|++|+
T Consensus 69 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSC
T ss_pred EECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCc
Confidence 9999999987777888999999999999999987655 56889999999999999998 478889999999999999999
Q ss_pred CCCCCchhccCCCCCCEEECCCCcCCCCC
Q 002350 230 LNGSLPSVISNLTSLEYLDLSHNNFEGMF 258 (933)
Q Consensus 230 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 258 (933)
+++..+..+..+++|++|++++|.+....
T Consensus 147 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 147 LKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99777778999999999999999987654
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.9e-17 Score=168.93 Aligned_cols=138 Identities=21% Similarity=0.242 Sum_probs=125.9
Q ss_pred CCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCC
Q 002350 117 EELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNL 196 (933)
Q Consensus 117 ~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L 196 (933)
++|++|+|++|.+.+..+ ..+..+++|++|+|++|.+++..|..|.++++|++|+|++|+++...+ ..+..+++|
T Consensus 32 ~~l~~L~l~~n~i~~i~~----~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPP----GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK-SLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSCCCEECT----TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred cCCCEEECCCCcCCCcCH----hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH-hHccCCCCC
Confidence 689999999999987655 678999999999999999998889999999999999999999996554 668899999
Q ss_pred CEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCC
Q 002350 197 FEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 259 (933)
Q Consensus 197 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 259 (933)
++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|.+...-.
T Consensus 107 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 999999999999889999999999999999999998888889999999999999999876544
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=1.3e-17 Score=171.36 Aligned_cols=157 Identities=22% Similarity=0.258 Sum_probs=124.9
Q ss_pred ccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCc
Q 002350 585 LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV 664 (933)
Q Consensus 585 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~ 664 (933)
-+.++.+++.++ .+|..+. ++|++|+|++|++++..|..|..+++|+.|++++|++++..+..|..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence 456777777776 5565443 67888888888888777888888888888888888886433333322
Q ss_pred cCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcC
Q 002350 665 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL 744 (933)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 744 (933)
+++|+.|||++|++
T Consensus 87 ------------------------------------------------------------------l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 87 ------------------------------------------------------------------LTQLTVLDLGTNQL 100 (229)
T ss_dssp ------------------------------------------------------------------CTTCCEEECCSSCC
T ss_pred ------------------------------------------------------------------CCCcCEEECCCCcC
Confidence 34677788888888
Q ss_pred CCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCC
Q 002350 745 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 822 (933)
Q Consensus 745 ~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~ 822 (933)
++..+..+..+++|+.|+|++|+++ .+|..+.++++|++|+|++|++++..+..+..+++|+.|++++|++.|.++.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 8777777888999999999999999 7888899999999999999999987778899999999999999999887763
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=6.6e-18 Score=180.44 Aligned_cols=122 Identities=21% Similarity=0.254 Sum_probs=63.0
Q ss_pred cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCC
Q 002350 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 593 (933)
Q Consensus 514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 593 (933)
+..+.+..+.+++..+ +..+++|+.|++++|.+... +....+++|++|++++|++++..+ +..+++|++|++++|
T Consensus 26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence 3444555555553322 33556666777766666533 222245555555555555554332 555555555555555
Q ss_pred cCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCC
Q 002350 594 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 644 (933)
Q Consensus 594 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 644 (933)
++++ + ..+..+++|++|++++|++++. +.+..+++|+.|++++|+++
T Consensus 101 ~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 101 KVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp CCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred cCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCC
Confidence 5553 2 2255555555555555555532 23455555555555555554
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.1e-17 Score=176.56 Aligned_cols=189 Identities=19% Similarity=0.326 Sum_probs=156.5
Q ss_pred CCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCC
Q 002350 538 LRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 617 (933)
Q Consensus 538 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 617 (933)
+..+.+..+.+.+..+. -.+++|++|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++|
T Consensus 26 ~~~~~l~~~~~~~~~~~-~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSEECH-HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCcccccch-hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence 33445556655543221 2688999999999999865 3 58889999999999999997544 899999999999999
Q ss_pred cCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchh
Q 002350 618 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMW 697 (933)
Q Consensus 618 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (933)
++++ +| .+..+++|+.|++++|++++. + .+.
T Consensus 101 ~l~~-~~-~l~~l~~L~~L~L~~n~i~~~-~-~l~--------------------------------------------- 131 (291)
T 1h6t_A 101 KVKD-LS-SLKDLKKLKSLSLEHNGISDI-N-GLV--------------------------------------------- 131 (291)
T ss_dssp CCCC-GG-GGTTCTTCCEEECTTSCCCCC-G-GGG---------------------------------------------
T ss_pred cCCC-Ch-hhccCCCCCEEECCCCcCCCC-h-hhc---------------------------------------------
Confidence 9986 34 499999999999999999852 2 121
Q ss_pred hhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhcc
Q 002350 698 RWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFS 777 (933)
Q Consensus 698 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 777 (933)
.+++|+.|++++|++++. ..++.+++|+.|+|++|++++..| ++
T Consensus 132 --------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~ 175 (291)
T 1h6t_A 132 --------------------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA 175 (291)
T ss_dssp --------------------------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred --------------------------------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hc
Confidence 235788899999999964 679999999999999999998766 99
Q ss_pred CCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcc
Q 002350 778 NLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 818 (933)
Q Consensus 778 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 818 (933)
.+++|+.|+|++|++++ +| .+..+++|+.|++++|+++.
T Consensus 176 ~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 99999999999999996 45 48999999999999999876
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=3.3e-18 Score=189.09 Aligned_cols=87 Identities=23% Similarity=0.143 Sum_probs=46.9
Q ss_pred cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhc---cCCCCCCEEECcCCeecccCCcCCcCCCC--CC
Q 002350 733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESF---SNLKMIESLDISYNKLTGQIPPQLTALNF--LS 807 (933)
Q Consensus 733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~LdLs~N~l~~~ip~~l~~l~~--L~ 807 (933)
+|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..| .++++|+.|||++|+|++..+..+..++. ++
T Consensus 113 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~ 192 (361)
T 2xot_A 113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHT
T ss_pred CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcc
Confidence 44455555555555555555555566666666666654433333 44566666666666666444444555554 25
Q ss_pred eEEccCCcCccc
Q 002350 808 IFNVSYNNLSGR 819 (933)
Q Consensus 808 ~L~ls~N~l~g~ 819 (933)
.|++++|++.+.
T Consensus 193 ~l~l~~N~~~C~ 204 (361)
T 2xot_A 193 GLYLHNNPLECD 204 (361)
T ss_dssp TEECCSSCEECC
T ss_pred eEEecCCCccCC
Confidence 566666666544
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=4e-18 Score=188.43 Aligned_cols=180 Identities=22% Similarity=0.223 Sum_probs=134.8
Q ss_pred cEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhh-cCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCc
Q 002350 586 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC-QLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV 664 (933)
Q Consensus 586 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~ 664 (933)
+.++++++.++ .+|..+. +.++.|+|++|++++..+..+. ++++|+.|+|++|++++..|..|.+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 86 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP----------- 86 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC-----------
Confidence 46677777766 3555443 3577777777777766666666 7788888888888877544443332
Q ss_pred cCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcC
Q 002350 665 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL 744 (933)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 744 (933)
+++|+.|||++|++
T Consensus 87 ------------------------------------------------------------------l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 87 ------------------------------------------------------------------VPNLRYLDLSSNHL 100 (361)
T ss_dssp ------------------------------------------------------------------CTTCCEEECCSSCC
T ss_pred ------------------------------------------------------------------CCCCCEEECCCCcC
Confidence 34677788888888
Q ss_pred CCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCC---cCCCCCCeEEccCCcCcccCC
Q 002350 745 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQL---TALNFLSIFNVSYNNLSGRTP 821 (933)
Q Consensus 745 ~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l---~~l~~L~~L~ls~N~l~g~~p 821 (933)
++..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..+ ..+++|+.|||++|+|++..+
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence 87777789999999999999999999999999999999999999999996544445 679999999999999986543
Q ss_pred CC-CcCCc--cCcccccCCCCCCCccc
Q 002350 822 DK-GQFAT--FDESSYRGNPSLCAWLI 845 (933)
Q Consensus 822 ~~-~~~~~--~~~~~~~gN~~lc~~~l 845 (933)
.. ..+.. +....+.|||+.|+|.+
T Consensus 181 ~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 181 TDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp HHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred HHhhhccHhhcceEEecCCCccCCcCc
Confidence 21 11222 24567899999998753
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=2.2e-17 Score=193.30 Aligned_cols=190 Identities=21% Similarity=0.296 Sum_probs=103.1
Q ss_pred cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCC
Q 002350 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 593 (933)
Q Consensus 514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 593 (933)
+..+.+..+.+.+..+ +..+++|+.|++++|.+... +....+++|+.|+|++|.+.+..| +..+++|+.|+|++|
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 3334444444443222 23444555555555554432 222245555555555555554433 555666666666666
Q ss_pred cCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCC
Q 002350 594 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP 673 (933)
Q Consensus 594 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 673 (933)
.+++ +| .+..+++|+.|+|++|++.+. +.+..+++|+.|+|++|++++. ..+.
T Consensus 98 ~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~--------------------- 150 (605)
T 1m9s_A 98 KIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS--------------------- 150 (605)
T ss_dssp CCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGG---------------------
T ss_pred CCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhc---------------------
Confidence 6653 22 455666666666666666642 3456666666666666666532 1111
Q ss_pred CccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhh
Q 002350 674 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG 753 (933)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 753 (933)
.+++|+.|+|++|++++..| +.
T Consensus 151 --------------------------------------------------------~l~~L~~L~Ls~N~l~~~~~--l~ 172 (605)
T 1m9s_A 151 --------------------------------------------------------RLTKLDTLSLEDNQISDIVP--LA 172 (605)
T ss_dssp --------------------------------------------------------SCTTCSEEECCSSCCCCCGG--GT
T ss_pred --------------------------------------------------------ccCCCCEEECcCCcCCCchh--hc
Confidence 12355566666666665444 66
Q ss_pred hccccCeeeccccccccccchhccCCCCCCEEECcCCeeccc
Q 002350 754 QLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ 795 (933)
Q Consensus 754 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 795 (933)
.+++|+.|+|++|+|++. | .+..+++|+.|+|++|++++.
T Consensus 173 ~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 666666666666666643 2 466666666666666666654
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=2e-19 Score=209.36 Aligned_cols=77 Identities=22% Similarity=0.171 Sum_probs=46.7
Q ss_pred cccEEEcCCCcCCCCCChhhhhccccCeeecccccccccc-chhccCCCCCCEEECcCCeecccCCcC---CcCCCCCCe
Q 002350 733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI-PESFSNLKMIESLDISYNKLTGQIPPQ---LTALNFLSI 808 (933)
Q Consensus 733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~ip~~---l~~l~~L~~ 808 (933)
+|+.|||++|++++ +| .++.+++|+.|+|++|+|++.+ |..|+++++|+.|+|++|++++.+|.. +..+++|++
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 44556666666664 45 5666666666666666666655 666666666666677666666554422 123566666
Q ss_pred EEc
Q 002350 809 FNV 811 (933)
Q Consensus 809 L~l 811 (933)
||+
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 653
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=3.4e-17 Score=167.05 Aligned_cols=155 Identities=23% Similarity=0.258 Sum_probs=127.1
Q ss_pred CEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcc-hhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEee
Q 002350 490 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP-VQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQ 567 (933)
Q Consensus 490 ~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~ 567 (933)
+++++++|.++ .+|..+. ..++.|++++|++++..+ ..|..+++|+.|++++|++++..+..+ .+++|++|+|+
T Consensus 14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 46666666665 4554332 236777777777776543 457788888888888888888777666 78889999999
Q ss_pred cCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCC
Q 002350 568 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 647 (933)
Q Consensus 568 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~ 647 (933)
+|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++++..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99998888888999999999999999999888999999999999999999999888999999999999999999998765
Q ss_pred C
Q 002350 648 P 648 (933)
Q Consensus 648 p 648 (933)
+
T Consensus 170 ~ 170 (220)
T 2v70_A 170 Y 170 (220)
T ss_dssp G
T ss_pred c
Confidence 4
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=1.7e-17 Score=165.52 Aligned_cols=113 Identities=22% Similarity=0.285 Sum_probs=91.9
Q ss_pred CcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEc
Q 002350 732 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 811 (933)
Q Consensus 732 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 811 (933)
++|+.|||++|++++.+|..|+.+++|++|+|++|+|++..|..|+++++|++|||++|++++.+|..+..+++|++|++
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 46777888888888888888999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCCcCcccCCCCCcCCccCcccccCCCCCCCcc
Q 002350 812 SYNNLSGRTPDKGQFATFDESSYRGNPSLCAWL 844 (933)
Q Consensus 812 s~N~l~g~~p~~~~~~~~~~~~~~gN~~lc~~~ 844 (933)
++|+++|.+|.......+....+.++...|+.|
T Consensus 134 ~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp TTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 999999887732111112223455666677665
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=7.2e-17 Score=188.97 Aligned_cols=188 Identities=23% Similarity=0.363 Sum_probs=135.3
Q ss_pred EECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCc
Q 002350 444 LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH 523 (933)
Q Consensus 444 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~ 523 (933)
+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|++++..| +..++. |+.|+|++|.
T Consensus 26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~-L~~L~Ls~N~ 98 (605)
T 1m9s_A 26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKN-LGWLFLDENK 98 (605)
T ss_dssp HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTT-CCEEECCSSC
T ss_pred HhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCC-CCEEECcCCC
Confidence 3444444443322 3456667777777776653 23 46667777777777777764333 556655 7777777777
Q ss_pred CCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhh
Q 002350 524 LEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI 603 (933)
Q Consensus 524 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 603 (933)
+.+ ++ .+..+++|+.|+|++|++.+. +....+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++..| +
T Consensus 99 l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l 171 (605)
T 1m9s_A 99 IKD-LS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 171 (605)
T ss_dssp CCC-CT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC-Ch-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h
Confidence 764 23 577788888888888888763 4344788888888888888765 577888899999999999887665 8
Q ss_pred hcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCC
Q 002350 604 NEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 647 (933)
Q Consensus 604 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~ 647 (933)
..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++..
T Consensus 172 ~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp TTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred ccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 8889999999999998864 35888899999999999887543
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=1.4e-19 Score=210.75 Aligned_cols=141 Identities=16% Similarity=0.185 Sum_probs=76.7
Q ss_pred cCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCc-------------CCCCcchhccCCCCCCEEE-ccCCcCc
Q 002350 484 LSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH-------------LEGNVPVQLNNLERLRILD-ISENRLS 549 (933)
Q Consensus 484 ~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-Ls~n~l~ 549 (933)
..++.|+.|++++|+++ .+|..++.+.. |+.|++++|. ..+..|..+..+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~-L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKE-LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHH-HHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-
Confidence 55778888889888886 78888888877 8888887664 2333344444444444444 333322
Q ss_pred cccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhc
Q 002350 550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 629 (933)
Q Consensus 550 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 629 (933)
..|+.+.+++|.+....+ ..|+.|++++|++++ +|. ++.+++|+.|+|++|+++ .+|..+++
T Consensus 423 ---------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ---------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 123333334444332211 124555555555553 343 555555555555555555 44555555
Q ss_pred CCCCCEEEccCCcCCC
Q 002350 630 LQKLAMMDLSRNKFSG 645 (933)
Q Consensus 630 l~~L~~L~Ls~N~l~g 645 (933)
+++|+.|+|++|++++
T Consensus 485 l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 485 LRCLEVLQASDNALEN 500 (567)
T ss_dssp CTTCCEEECCSSCCCC
T ss_pred CCCCCEEECCCCCCCC
Confidence 5555555555555543
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=5.6e-17 Score=162.58 Aligned_cols=155 Identities=17% Similarity=0.246 Sum_probs=101.6
Q ss_pred ccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhcccc
Q 002350 580 FRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV 659 (933)
Q Consensus 580 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~ 659 (933)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..++.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------ 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence 34456666666666666 344 4666666777777766554 2335666777777777777776544443322
Q ss_pred CCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEc
Q 002350 660 GSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDL 739 (933)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 739 (933)
+++|+.|++
T Consensus 111 -----------------------------------------------------------------------l~~L~~L~L 119 (197)
T 4ezg_A 111 -----------------------------------------------------------------------LTSLTLLDI 119 (197)
T ss_dssp -----------------------------------------------------------------------CTTCCEEEC
T ss_pred -----------------------------------------------------------------------CCCCCEEEe
Confidence 235666777
Q ss_pred CCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcc
Q 002350 740 SCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 818 (933)
Q Consensus 740 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 818 (933)
++|++++..|..++.+++|+.|+|++|.+.+.+| .++++++|++|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 7777777677777778888888888887333455 57788888888888888875 33 67778888888888887653
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=8.9e-18 Score=201.90 Aligned_cols=129 Identities=17% Similarity=0.263 Sum_probs=84.7
Q ss_pred CCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCc
Q 002350 521 KNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 600 (933)
Q Consensus 521 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 600 (933)
.|.+. ..+..+..++.|+.|+|++|++....+..+.+++|++|+|++|.++ .+|..+..+++|++|+|++|+++ .+|
T Consensus 210 ~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp 286 (727)
T 4b8c_D 210 ENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLP 286 (727)
T ss_dssp -------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCC
T ss_pred cccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccC
Confidence 34443 4566677777888888888877744444447777777777777777 56777777777777777777777 567
Q ss_pred hhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhh
Q 002350 601 HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 653 (933)
Q Consensus 601 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~ 653 (933)
..++.+++|++|+|++|.++ .+|..|..+++|+.|+|++|+++|.+|..+..
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred hhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 77777777777777777776 56666777777777777777777766665543
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=4.7e-17 Score=170.94 Aligned_cols=171 Identities=20% Similarity=0.277 Sum_probs=132.5
Q ss_pred cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEE
Q 002350 557 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMM 636 (933)
Q Consensus 557 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 636 (933)
.+..+..+++++|.+++.. .+..+++|++|++++|.++ .+| .+..+++|++|++++|++++..+ +.++++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3455666677777776442 5677788888888888887 345 67888888888888888886544 8888888899
Q ss_pred EccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHh
Q 002350 637 DLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIE 716 (933)
Q Consensus 637 ~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 716 (933)
++++|++++ +|..
T Consensus 91 ~L~~N~l~~-l~~~------------------------------------------------------------------ 103 (263)
T 1xeu_A 91 SVNRNRLKN-LNGI------------------------------------------------------------------ 103 (263)
T ss_dssp ECCSSCCSC-CTTC------------------------------------------------------------------
T ss_pred ECCCCccCC-cCcc------------------------------------------------------------------
Confidence 998888874 2210
Q ss_pred hhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccC
Q 002350 717 FAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 796 (933)
Q Consensus 717 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~i 796 (933)
.. ++|+.|+|++|++++ +| .++.+++|+.|+|++|++++. | .++++++|+.|+|++|++++.
T Consensus 104 ------------~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 104 ------------PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp ------------CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred ------------cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 00 357789999999885 34 588889999999999999865 4 688899999999999999876
Q ss_pred CcCCcCCCCCCeEEccCCcCccc
Q 002350 797 PPQLTALNFLSIFNVSYNNLSGR 819 (933)
Q Consensus 797 p~~l~~l~~L~~L~ls~N~l~g~ 819 (933)
..+..+++|+.|++++|++++.
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHhccCCCCCEEeCCCCcccCC
Confidence 6788889999999999988765
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=2.4e-17 Score=198.25 Aligned_cols=227 Identities=21% Similarity=0.217 Sum_probs=127.1
Q ss_pred CCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEE
Q 002350 487 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLS 565 (933)
Q Consensus 487 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~ 565 (933)
+.++.|++.+|.+.. .+.. . ++.++|+.|.+.+ ++++.|++. ..+..+ .++.|+.|+
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~-----~-l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~ 230 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQA-----L-LQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALD 230 (727)
T ss_dssp -----------------------------------------------------------------------CCCCCCEEE
T ss_pred CccceEEeeCCCCCc-chhh-----H-hhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEE
Confidence 456677777776653 2222 1 5566666665542 344455554 344455 899999999
Q ss_pred eecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCC
Q 002350 566 LQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG 645 (933)
Q Consensus 566 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 645 (933)
|++|.+. .+|..++.+++|++|+|++|.++ .+|..|+.+++|++|+|++|+++ .+|..|.++++|++|+|++|.++
T Consensus 231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~- 306 (727)
T 4b8c_D 231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT- 306 (727)
T ss_dssp CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-
T ss_pred CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-
Confidence 9999998 67778889999999999999999 88999999999999999999999 78999999999999999999997
Q ss_pred CCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceee
Q 002350 646 SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEI 725 (933)
Q Consensus 646 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 725 (933)
.+|..|+++
T Consensus 307 ~lp~~~~~l----------------------------------------------------------------------- 315 (727)
T 4b8c_D 307 TLPWEFGNL----------------------------------------------------------------------- 315 (727)
T ss_dssp CCCSSTTSC-----------------------------------------------------------------------
T ss_pred ccChhhhcC-----------------------------------------------------------------------
Confidence 777765543
Q ss_pred ecCCCCCcccEEEcCCCcCCCCCChhhhhccc-cCeeeccccccccccchhccCCCCCCEEECcCC--------eecccC
Q 002350 726 YNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQA-ILALNLSNNSLSGSIPESFSNLKMIESLDISYN--------KLTGQI 796 (933)
Q Consensus 726 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N--------~l~~~i 796 (933)
++|+.|+|++|.|+|.+|..+..+.. +..|+|++|.++|.+|.. |+.|++++| .+.+.+
T Consensus 316 ------~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~ 383 (727)
T 4b8c_D 316 ------CNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQST 383 (727)
T ss_dssp ------TTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------------------
T ss_pred ------CCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccc
Confidence 46778999999999999998876533 335899999999999874 566777777 555556
Q ss_pred CcCCcCCCCCCeEEccCCcCcccCCC
Q 002350 797 PPQLTALNFLSIFNVSYNNLSGRTPD 822 (933)
Q Consensus 797 p~~l~~l~~L~~L~ls~N~l~g~~p~ 822 (933)
+..+..+..+....+++|-+.+....
T Consensus 384 ~~~~~~l~~~~~~~ls~Nil~~~~~~ 409 (727)
T 4b8c_D 384 EHLATDLAKRTFTVLSYNTLCQHYAT 409 (727)
T ss_dssp ------------------CCCGGGCC
T ss_pred cchhhcccccceeeeeccccccccCc
Confidence 66667788888899999998765543
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=1.4e-16 Score=158.86 Aligned_cols=132 Identities=26% Similarity=0.380 Sum_probs=100.2
Q ss_pred cEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCch-hhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCc
Q 002350 586 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPD-QLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV 664 (933)
Q Consensus 586 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~ 664 (933)
+++++++|+++ .+|..+.. +|++|++++|++++..+. .|..+++|++|++++|++++..|..|.++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---------- 77 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA---------- 77 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC----------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc----------
Confidence 56777777775 55655432 677777777777765554 37778888888888888877666555432
Q ss_pred cCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcC
Q 002350 665 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL 744 (933)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 744 (933)
++|+.|||++|++
T Consensus 78 -------------------------------------------------------------------~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 78 -------------------------------------------------------------------SHIQELQLGENKI 90 (192)
T ss_dssp -------------------------------------------------------------------TTCCEEECCSCCC
T ss_pred -------------------------------------------------------------------ccCCEEECCCCcC
Confidence 3567788888888
Q ss_pred CCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCC
Q 002350 745 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP 797 (933)
Q Consensus 745 ~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip 797 (933)
++..|..|+.+++|++|+|++|++++.+|..|+.+++|++|+|++|.+++..+
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 87777778888889999999999998888889999999999999999887654
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=2.6e-16 Score=165.24 Aligned_cols=170 Identities=22% Similarity=0.302 Sum_probs=126.5
Q ss_pred cCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEE
Q 002350 462 LTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRIL 541 (933)
Q Consensus 462 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 541 (933)
+.++..+++++|.+++. + .+..+++|++|++++|.++ .++ .+..++. |+.|++++|++++..+ +..+++|+.|
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~-L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTN-LKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTT-CCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCC-CCEEECCCCccCCChh--hccCCCCCEE
Confidence 45556666666666633 2 4556677777777777776 444 4555555 7777777777775444 7778888888
Q ss_pred EccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCC
Q 002350 542 DISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQG 621 (933)
Q Consensus 542 ~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 621 (933)
++++|++++..+ ... ++|++|++++|++++. ..+..+++|++|++++|++++. + .+..+++|++|++++|++++
T Consensus 91 ~L~~N~l~~l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 91 SVNRNRLKNLNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp ECCSSCCSCCTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred ECCCCccCCcCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 888888776433 223 7888888888888764 3588889999999999999864 4 68889999999999999987
Q ss_pred CCchhhhcCCCCCEEEccCCcCCCC
Q 002350 622 PIPDQLCQLQKLAMMDLSRNKFSGS 646 (933)
Q Consensus 622 ~~p~~l~~l~~L~~L~Ls~N~l~g~ 646 (933)
. ..+..+++|+.|++++|++++.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 5 6788899999999999999865
No 122
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=1.2e-15 Score=152.70 Aligned_cols=150 Identities=16% Similarity=0.196 Sum_probs=95.7
Q ss_pred CCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEE
Q 002350 487 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLS 565 (933)
Q Consensus 487 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~ 565 (933)
++|++|++++|.++ .+| .+..++. |++|++++|.++ .+..+..+++|++|++++|++++..+..+ .+++|++|+
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~-L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHN-IKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTT-CSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCC-CCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34444444444444 333 2333333 555555555433 12245566667777777777666555555 667777777
Q ss_pred eecCcCcccCchhhccCCCccEEeCcCCc-CcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCC
Q 002350 566 LQKNALNGLIPGELFRSCKLVTLNLRDNT-FSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 644 (933)
Q Consensus 566 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 644 (933)
+++|.+++..|..+..+++|++|++++|+ ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 77777776667778888888888888887 54 455 67888888888888888875 33 6788888888888888875
Q ss_pred C
Q 002350 645 G 645 (933)
Q Consensus 645 g 645 (933)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=7.9e-17 Score=175.70 Aligned_cols=288 Identities=13% Similarity=0.134 Sum_probs=176.7
Q ss_pred CCCCCEeeCCCCCCccccCccccccCCC-CCCCCEEeCCCCcCC--CcchhhhcCCCCCCEEecCCCcccCccChhhhcC
Q 002350 116 LEELQSLDLSVNIFTYDSKVAAYDSLRS-LKQLKILVLGHNYFD--DSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICE 192 (933)
Q Consensus 116 l~~L~~LdLs~n~~~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~ 192 (933)
+.+++.|+++++ +.......+.. +++|++|||++|++. ..... .++.++.+.+..|.+ +...+..
T Consensus 24 ~~~l~~L~l~g~-----i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I----~~~aF~~ 91 (329)
T 3sb4_A 24 ANSITHLTLTGK-----LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV----PAYAFSN 91 (329)
T ss_dssp HHHCSEEEEEEE-----ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE----CTTTTEE
T ss_pred hCceeEEEEecc-----ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc----CHHHhcc
Confidence 556777777643 11111123333 667777777777765 11111 122234444444432 2245555
Q ss_pred --------CCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhh
Q 002350 193 --------LKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLA 264 (933)
Q Consensus 193 --------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~ 264 (933)
+++|++|+|.+ .++.....+|.+|++|+.+++++|.+....+..|.++.++..+....+... .
T Consensus 92 ~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~--------~ 162 (329)
T 3sb4_A 92 VVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY--------R 162 (329)
T ss_dssp EETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH--------H
T ss_pred cccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh--------h
Confidence 67777777776 666655566777777777777777666555666666665555554442210 0
Q ss_pred cCCCCceEecccccCccccccCCCCCCCcce-EEEccCCCCCCCCchhhh----CCCCCCEEEccCCCCcccchhHHHhC
Q 002350 265 NHSKLEGLLLSTRNNTLHVKTENWLPTSQLI-VLGLTKCNLNGSYPDFLL----HQYHLKYLDLSHNKLVGNFPTWLLRN 339 (933)
Q Consensus 265 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~p~~l~----~l~~L~~L~Ls~n~l~~~~p~~~~~~ 339 (933)
....+...+|..+..|+ .+.+... +.++..+. ...+++.+.+.++-.. .....+...
T Consensus 163 --------------~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~ 224 (329)
T 3sb4_A 163 --------------FKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDY 224 (329)
T ss_dssp --------------TSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHH
T ss_pred --------------ccccccccccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHh
Confidence 00111222333333444 3333321 11222221 3456677777665332 223333345
Q ss_pred CCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCcc-EEEccCCCCCCCccccccCCCCCCE
Q 002350 340 NPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLM-YMDISKNCFEGNIPYSAGEMKELSL 418 (933)
Q Consensus 340 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~-~L~Ls~n~l~~~~p~~l~~l~~L~~ 418 (933)
+++|+.+++++|+++.++...|..+++|+++++.+| ++ .++...|..+++|+ .+++.+ .++...+.+|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 788899999888888888888888889999999887 65 78888888888998 999988 676666788899999999
Q ss_pred EEcCCCcCCCCcchhhhcCCCCCCEEEC
Q 002350 419 LDLSRNYFSGGLSQSVVTGCFSLELLDL 446 (933)
Q Consensus 419 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 446 (933)
++++.|++. .++...|.++++|+.++.
T Consensus 302 l~l~~n~i~-~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKIT-TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccC-ccchhhhcCCcchhhhcc
Confidence 999888887 788888889999998864
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=4.9e-16 Score=169.39 Aligned_cols=290 Identities=12% Similarity=0.077 Sum_probs=150.6
Q ss_pred CCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhc------
Q 002350 315 QYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI------ 388 (933)
Q Consensus 315 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~------ 388 (933)
+.+++.|.++++- ...-...+...+++|+.|+|++|++...... .+.++.++.+.+..| .+|...|..
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~-~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGK-AGTYPNGKFYIYMAN----FVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEES-SSSSGGGCCEEECTT----EECTTTTEEEETTEE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCc-ccccccccccccccc----ccCHHHhcccccccc
Confidence 4567788877542 1111122332367788888888877622111 112222344444444 344445444
Q ss_pred --CCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCC
Q 002350 389 --LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLR 466 (933)
Q Consensus 389 --l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 466 (933)
+++|+.+++.+ .++...+.+|..+++|+.+++++|.+. .++...|.++.++..+....+...
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~-------------- 161 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAY-------------- 161 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHH--------------
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhh--------------
Confidence 55666666655 454444445555555555555555554 444444444444444443332110
Q ss_pred eEEccCccccccccccccCCCCCC-EEEccCCcCCCCChhhHhhh---ccccceeecCCCcCCCCcchhccCCCCCCEEE
Q 002350 467 HLYFENNNFSGKIKDGLLSSTSLQ-VLDISNNMLSGHIPHWMGNF---SSELEILSMSKNHLEGNVPVQLNNLERLRILD 542 (933)
Q Consensus 467 ~L~L~~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~p~~l~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 542 (933)
..........+..+..|+ .+.+... +.++..+... ..+++.+.+.++-...........+++|+.++
T Consensus 162 ------~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~ 232 (329)
T 3sb4_A 162 ------RFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLD 232 (329)
T ss_dssp ------HTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEE
T ss_pred ------hccccccccccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEE
Confidence 000111122233334444 3333221 1233322211 12244444443321111111112356677777
Q ss_pred ccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCcc-EEeCcCCcCcccCchhhhcCCCccEEEcCCCcCC
Q 002350 543 ISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLV-TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ 620 (933)
Q Consensus 543 Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 620 (933)
+++|+++...+..| ++++|+.+++.+| +..+.+.+|.+|++|+ .+++.+ .++...+.+|.+|++|+.+++++|+++
T Consensus 233 L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 233 ISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp CTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred CCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 77766666555555 6677777777666 6656666777777777 777777 666566677777777777777777777
Q ss_pred CCCchhhhcCCCCCEEE
Q 002350 621 GPIPDQLCQLQKLAMMD 637 (933)
Q Consensus 621 ~~~p~~l~~l~~L~~L~ 637 (933)
...+.+|.++++|+.++
T Consensus 311 ~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 311 TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECTTTTCTTCCCCEEE
T ss_pred ccchhhhcCCcchhhhc
Confidence 66666777777777775
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=8.1e-15 Score=145.88 Aligned_cols=89 Identities=25% Similarity=0.281 Sum_probs=68.7
Q ss_pred cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350 733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 812 (933)
Q Consensus 733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 812 (933)
+|+.|||++|++++..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 45567777777776666677778888888888888887777788888888888888888886666678888888888888
Q ss_pred CCcCcccCC
Q 002350 813 YNNLSGRTP 821 (933)
Q Consensus 813 ~N~l~g~~p 821 (933)
+|++.+.++
T Consensus 135 ~N~~~C~c~ 143 (193)
T 2wfh_A 135 ANPLYCDCN 143 (193)
T ss_dssp SSCEECSGG
T ss_pred CCCeecCCc
Confidence 888776554
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=4.3e-15 Score=144.64 Aligned_cols=87 Identities=23% Similarity=0.244 Sum_probs=54.0
Q ss_pred CcccEEEcCCCcCCCCCChhhhhccccCeeecccccccccc-chhccCCCCCCEEECcCCeecccCC---cCCcCCCCCC
Q 002350 732 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI-PESFSNLKMIESLDISYNKLTGQIP---PQLTALNFLS 807 (933)
Q Consensus 732 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~ip---~~l~~l~~L~ 807 (933)
++|+.|||++|++++.+|..++.+++|++|+|++|++++.. +..++++++|++|++++|++++..+ ..+..+++|+
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence 34555666666666556666666666666666666666532 2566666667777777776664444 3566666777
Q ss_pred eEEccCCcCcc
Q 002350 808 IFNVSYNNLSG 818 (933)
Q Consensus 808 ~L~ls~N~l~g 818 (933)
+|++++|.+..
T Consensus 151 ~L~l~~n~~~~ 161 (168)
T 2ell_A 151 YLDGYDREDQE 161 (168)
T ss_dssp EETTEETTSCB
T ss_pred EecCCCCChhh
Confidence 77777666543
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=144.61 Aligned_cols=112 Identities=27% Similarity=0.412 Sum_probs=102.0
Q ss_pred cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350 733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 812 (933)
Q Consensus 733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 812 (933)
.++.|+|++|+++ .+|..+..+++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 5778999999998 888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCC-CcCCccCcccccCCCCCCCccc
Q 002350 813 YNNLSGRTPDK-GQFATFDESSYRGNPSLCAWLI 845 (933)
Q Consensus 813 ~N~l~g~~p~~-~~~~~~~~~~~~gN~~lc~~~l 845 (933)
+|++++..+.. ..+..+....+.+||+.|+|.+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 99999766643 4566777888999999998864
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=8.7e-15 Score=139.29 Aligned_cols=128 Identities=25% Similarity=0.198 Sum_probs=69.6
Q ss_pred CCCCCEeeCCCCCCc-cccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCC
Q 002350 116 LEELQSLDLSVNIFT-YDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELK 194 (933)
Q Consensus 116 l~~L~~LdLs~n~~~-~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~ 194 (933)
.++|++|++++|.+. +.++ ..+..+++|++|++++|.+++. ..++++++|++|++++|.+++..| ..+..++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLE----GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCC----SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCT
T ss_pred CccCeEEEccCCcCChhHHH----HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH-HHhhhCC
Confidence 356666666666665 4444 4455666666666666666544 445555666666666665555433 3344455
Q ss_pred CCCEEECCCCCCCCc-chhhcCCCCCCCEEEccCCcCCCCCc---hhccCCCCCCEEECC
Q 002350 195 NLFEMNLERNFIGSP-LITCLKNLTRLKILDISSNQLNGSLP---SVISNLTSLEYLDLS 250 (933)
Q Consensus 195 ~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~L~ 250 (933)
+|++|++++|.+++. .+..++++++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555555555552 23445555555555555555554433 344555555555543
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=1.8e-14 Score=141.57 Aligned_cols=90 Identities=22% Similarity=0.228 Sum_probs=72.6
Q ss_pred cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350 733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 812 (933)
Q Consensus 733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 812 (933)
+|+.|++++|++++..+..++.+++|++|+|++|++++..+..|+++++|++|+|++|++++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 56667777777776556667788888888888888887777778888999999999999987666667888899999999
Q ss_pred CCcCcccCCC
Q 002350 813 YNNLSGRTPD 822 (933)
Q Consensus 813 ~N~l~g~~p~ 822 (933)
+|+++|.+|.
T Consensus 133 ~N~~~~~~~~ 142 (177)
T 2o6r_A 133 TNPWDCSCPR 142 (177)
T ss_dssp SSCBCCCHHH
T ss_pred CCCeeccCcc
Confidence 9988887763
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=2e-14 Score=139.94 Aligned_cols=131 Identities=16% Similarity=0.123 Sum_probs=104.3
Q ss_pred ccceeecCCCcCC-CCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCc
Q 002350 513 ELEILSMSKNHLE-GNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 591 (933)
Q Consensus 513 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 591 (933)
+|+.|++++|.++ +.+|..+..+++|+.|++++|++++. +....+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 3777777777776 56666677778888888888887766 333378888888888888887778888888999999999
Q ss_pred CCcCcccC-chhhhcCCCccEEEcCCCcCCCCCc---hhhhcCCCCCEEEccCCcCC
Q 002350 592 DNTFSGRI-PHQINEHSNLRFLLLGGNHLQGPIP---DQLCQLQKLAMMDLSRNKFS 644 (933)
Q Consensus 592 ~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~ 644 (933)
+|++++.. +..+..+++|++|++++|++++..+ ..+..+++|+.|++++|.+.
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99988542 2778889999999999999986655 47888999999999999876
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=3.1e-14 Score=135.40 Aligned_cols=128 Identities=20% Similarity=0.207 Sum_probs=106.3
Q ss_pred cccceeecCCCcCC-CCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeC
Q 002350 512 SELEILSMSKNHLE-GNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNL 590 (933)
Q Consensus 512 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 590 (933)
.+|+.|++++|.++ +.+|..+..+++|+.|++++|++++. +....+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 34888888888887 67777788888999999999988876 33337889999999999998878888888999999999
Q ss_pred cCCcCccc-CchhhhcCCCccEEEcCCCcCCCCCc---hhhhcCCCCCEEEccC
Q 002350 591 RDNTFSGR-IPHQINEHSNLRFLLLGGNHLQGPIP---DQLCQLQKLAMMDLSR 640 (933)
Q Consensus 591 s~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~ 640 (933)
++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999863 34788899999999999999987665 5788899999998863
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=7.4e-16 Score=154.50 Aligned_cols=155 Identities=21% Similarity=0.274 Sum_probs=119.3
Q ss_pred hccCCCccEEeCcCCcCcccCch------hhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhh
Q 002350 579 LFRSCKLVTLNLRDNTFSGRIPH------QINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFA 652 (933)
Q Consensus 579 ~~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~ 652 (933)
+.....++.++++.+.+++..|. .+..+++|++|++++|++++ +| .+..+++|+.|++++|+++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34445666666666666666555 88888999999999999886 66 8888899999999999887 5565433
Q ss_pred hhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCC
Q 002350 653 NVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVN 732 (933)
Q Consensus 653 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 732 (933)
.+ +
T Consensus 91 ~~-----------------------------------------------------------------------------~ 93 (198)
T 1ds9_A 91 VA-----------------------------------------------------------------------------D 93 (198)
T ss_dssp HH-----------------------------------------------------------------------------H
T ss_pred cC-----------------------------------------------------------------------------C
Confidence 22 2
Q ss_pred cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccc-hhccCCCCCCEEECcCCeecccCCcC----------Cc
Q 002350 733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP-ESFSNLKMIESLDISYNKLTGQIPPQ----------LT 801 (933)
Q Consensus 733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~ip~~----------l~ 801 (933)
+|+.||+++|++++ +| .++.+++|+.|++++|++++..+ ..+.++++|++|++++|++++.+|.. +.
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 57779999999985 55 68888999999999999986443 57889999999999999998877764 77
Q ss_pred CCCCCCeEEccCCcCc
Q 002350 802 ALNFLSIFNVSYNNLS 817 (933)
Q Consensus 802 ~l~~L~~L~ls~N~l~ 817 (933)
.+++|++|| +|.++
T Consensus 172 ~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVD 185 (198)
T ss_dssp HCSSCSEEC--CGGGT
T ss_pred hCCCcEEEC--CcccC
Confidence 888888887 56554
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=4.7e-13 Score=148.81 Aligned_cols=264 Identities=12% Similarity=0.075 Sum_probs=149.1
Q ss_pred CCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEE
Q 002350 340 NPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLL 419 (933)
Q Consensus 340 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 419 (933)
+..++.+.+.+ .++.+....|..+ +|+.+.+..+ ++ .++...|.. .+|+.+.+.. .+....+.+|.++++|+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 45666666654 3555544555554 5666666554 33 444444443 3466666554 3443334455555555555
Q ss_pred EcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcC
Q 002350 420 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 499 (933)
Q Consensus 420 ~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 499 (933)
+++.|.++ .++...|. +.+|+.+.+..+ +..+...+ |..+++|+.+++..+ +
T Consensus 186 ~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~a------------------------F~~~~~L~~l~l~~~-l 237 (401)
T 4fdw_A 186 DLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQA------------------------FLKTSQLKTIEIPEN-V 237 (401)
T ss_dssp ECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTT------------------------TTTCTTCCCEECCTT-C
T ss_pred ecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhH------------------------hhCCCCCCEEecCCC-c
Confidence 55555554 44444443 345555555422 33333344 444444444444432 2
Q ss_pred CCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCc-----cccCccc-cCCCCceEEeecCcCcc
Q 002350 500 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS-----GPIASSL-NLSSVEHLSLQKNALNG 573 (933)
Q Consensus 500 ~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~-~l~~L~~L~L~~n~l~~ 573 (933)
+ .++...+.... |+.+.+ .+.++.....+|.+|++|+.+++.+|.+. ...+..| +|++|+.+.+. +.+..
T Consensus 238 ~-~I~~~aF~~~~-L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~ 313 (401)
T 4fdw_A 238 S-TIGQEAFRESG-ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI 313 (401)
T ss_dssp C-EECTTTTTTCC-CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCE
T ss_pred c-CccccccccCC-ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEE
Confidence 2 22221111122 666666 33344455667777778888877776654 2334445 67777777777 34666
Q ss_pred cCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCC-CCCEEEccCCcC
Q 002350 574 LIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ-KLAMMDLSRNKF 643 (933)
Q Consensus 574 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l 643 (933)
+....|.+|++|+.++|..| ++...+.+|.++ +|+.+++.+|.+....+..|.+++ .++.|++..+.+
T Consensus 314 I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 314 LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 66677777888888888554 555566777777 888888888877765666677664 667777665543
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=1.8e-13 Score=134.41 Aligned_cols=132 Identities=22% Similarity=0.274 Sum_probs=100.5
Q ss_pred cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcC
Q 002350 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 592 (933)
Q Consensus 514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 592 (933)
.+.+++++++++ .+|..+ .++|+.|++++|++.+..+..+ .+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 455666666665 334322 2567777777777776665555 677777777777777766666778888999999999
Q ss_pred CcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCC
Q 002350 593 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 648 (933)
Q Consensus 593 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 648 (933)
|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99987777778888999999999999987666677889999999999999987665
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=6.8e-13 Score=147.54 Aligned_cols=269 Identities=9% Similarity=0.097 Sum_probs=192.1
Q ss_pred CCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccE
Q 002350 315 QYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY 394 (933)
Q Consensus 315 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~ 394 (933)
+..++.+.+.. .++ .++...|.++ +|+.+.+..+ ++.+...+|..+ +|+.+.+.. .++ .++...|..+++|+.
T Consensus 112 ~~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred cCCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence 46788888865 454 6777667664 7999999876 888877788775 699999986 565 677777788999999
Q ss_pred EEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCcc
Q 002350 395 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNN 474 (933)
Q Consensus 395 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 474 (933)
++++.|.++......|. +.+|+.+.+..+ +. .++...|.+|++|+.+++..+ ++.....+|.+ .+|+.+.+. +.
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence 99999999855455555 689999999865 55 788888999999999999875 56566667777 789999984 44
Q ss_pred ccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCc
Q 002350 475 FSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIAS 554 (933)
Q Consensus 475 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 554 (933)
++.....+|..+++|+.+++.+|.+.. +......+.+|.+|++|+.+++. +.+......
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~--------------------~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~ 317 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFND--------------------DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQG 317 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCC--------------------CTTCEECTTTTTTCTTCCEECCC-TTCCEECTT
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccC--------------------CcccEECHHHhhCCccCCeEEeC-CceEEEhhh
Confidence 555667788888889988888776541 01111334456666666666666 335544455
Q ss_pred cc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCC-CccEEEcCCCcC
Q 002350 555 SL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHS-NLRFLLLGGNHL 619 (933)
Q Consensus 555 ~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~N~l 619 (933)
.| +|++|+.+.|..+ ++.+.+.+|.++ +|+.+++++|.+....+..|.+++ +++.|++..+.+
T Consensus 318 aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 318 LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 55 6677777777443 555556667777 777777777776655556666653 667777766543
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.48 E-value=7.9e-13 Score=147.80 Aligned_cols=334 Identities=10% Similarity=0.062 Sum_probs=160.7
Q ss_pred cccccccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCc
Q 002350 105 FPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGS 184 (933)
Q Consensus 105 ~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~ 184 (933)
++.|...+|..+++|+.++|..+ ++. .+..+|.++++|+.+++..+ ++......|.++++|+.+.+..+ +...
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~----I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i 131 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VRE----IGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSI 131 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCE----ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccC----cchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeee
Confidence 34567778888888888888643 322 22267777888888887654 44444556677777776666543 2211
Q ss_pred cChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhh
Q 002350 185 QTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLA 264 (933)
Q Consensus 185 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~ 264 (933)
.. ..+..+..++....... ......+|.+|++|+.+.+.++. .......|.++.+|+.+++..+ ++ .++...+.
T Consensus 132 ~~-~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~ 205 (394)
T 4fs7_A 132 GV-EAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFA 205 (394)
T ss_dssp CT-TTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTT
T ss_pred cc-eeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhc
Confidence 11 33444433332222221 11223456666666666665432 2233445555666666555544 11 22233344
Q ss_pred cCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCC
Q 002350 265 NHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLE 344 (933)
Q Consensus 265 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~ 344 (933)
++..|+.+.+ ..+... +.+......+|+.+.+.... + .+....+..+..++
T Consensus 206 ~~~~L~~i~~-------------------------~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~ 256 (394)
T 4fs7_A 206 ECILLENMEF-------------------------PNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLE 256 (394)
T ss_dssp TCTTCCBCCC-------------------------CTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCC
T ss_pred cccccceeec-------------------------CCCceE--eehhhcccCCCceEEECCCc-e-ecccccccccccce
Confidence 4444444333 222111 11222233445555554321 1 23333334555555
Q ss_pred EEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCC
Q 002350 345 VLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRN 424 (933)
Q Consensus 345 ~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 424 (933)
.+.+..+. ..+....+..+..++.+....+. ++...+..+.+|+.+.+..+ ++.....+|.++++|+.+++..+
T Consensus 257 ~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~ 330 (394)
T 4fs7_A 257 SISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL 330 (394)
T ss_dssp EEEECCTT-CEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred eEEcCCCc-ceeeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc
Confidence 55555442 22333444555555555554432 23333344555666655443 33233344555555666555433
Q ss_pred cCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCE
Q 002350 425 YFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQV 491 (933)
Q Consensus 425 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 491 (933)
++ .+....|.+|.+|+.+++..+ ++.....+|.+|++|+.+++..+ +. .+...|.++++|+.
T Consensus 331 -v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 331 -VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp -CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred -cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 22 444455555555555555544 44444445555555555555433 11 12234444444443
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.46 E-value=7.6e-13 Score=147.91 Aligned_cols=218 Identities=15% Similarity=0.129 Sum_probs=107.1
Q ss_pred ccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCC
Q 002350 410 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSL 489 (933)
Q Consensus 410 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 489 (933)
|.++++|+.+.+..+.. .++...|.++.+|+.+.+..+ +.......|.++..|+.+.+..+... +........+|
T Consensus 158 F~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l 232 (394)
T 4fs7_A 158 FATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGV 232 (394)
T ss_dssp TTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCC
T ss_pred hcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCC
Confidence 44444444444443321 234444444555555544433 33233334445555555544443322 12222333455
Q ss_pred CEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeec
Q 002350 490 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQK 568 (933)
Q Consensus 490 ~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~ 568 (933)
+.+.+.... +......+..+.. ++.+.+..+... .....|..+..++.+....+.+ ....+ .+.+|+.+.+.+
T Consensus 233 ~~i~ip~~~-~~i~~~~f~~~~~-l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 233 KNIIIPDSF-TELGKSVFYGCTD-LESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CEEEECTTC-CEECSSTTTTCSS-CCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECT
T ss_pred ceEEECCCc-eeccccccccccc-ceeEEcCCCcce-eeccccccccccceeccCceee---cccccccccccccccccc
Confidence 555554321 1011112223333 555555544332 3444556666666666554332 11222 566666666654
Q ss_pred CcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCC
Q 002350 569 NALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 641 (933)
Q Consensus 569 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 641 (933)
+ ++.+...+|.+|.+|+.+++.++ ++..-..+|.+|++|+.+++..+ ++..-..+|.++++|+.+++..+
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred c-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 3 44444556666777777777543 54444566667777777777655 55444566777777777776544
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=2.8e-13 Score=131.76 Aligned_cols=91 Identities=23% Similarity=0.208 Sum_probs=79.7
Q ss_pred cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350 733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 812 (933)
Q Consensus 733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 812 (933)
.++.|+|++|++++..|..|+.+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 56779999999998888889999999999999999998888888999999999999999998777778999999999999
Q ss_pred CCcCcccCCCC
Q 002350 813 YNNLSGRTPDK 823 (933)
Q Consensus 813 ~N~l~g~~p~~ 823 (933)
+|++++.++..
T Consensus 111 ~N~~~c~c~~l 121 (170)
T 3g39_A 111 NNPWDCACSDI 121 (170)
T ss_dssp SSCBCTTBGGG
T ss_pred CCCCCCCchhH
Confidence 99998877643
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=4e-13 Score=130.63 Aligned_cols=109 Identities=23% Similarity=0.275 Sum_probs=97.5
Q ss_pred cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350 733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 812 (933)
Q Consensus 733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 812 (933)
..+.+|+++|+++ .+|..+. +.|+.|+|++|+|++..|..|+++++|++|||++|+|++..|..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3467999999998 5887774 789999999999999999999999999999999999998888888999999999999
Q ss_pred CCcCcccCCC-CCcCCccCcccccCCCCCCCcc
Q 002350 813 YNNLSGRTPD-KGQFATFDESSYRGNPSLCAWL 844 (933)
Q Consensus 813 ~N~l~g~~p~-~~~~~~~~~~~~~gN~~lc~~~ 844 (933)
+|+|++..|. ...+..+....+.+||+.|.++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999987775 3567778888899999999875
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=6.6e-15 Score=147.53 Aligned_cols=150 Identities=24% Similarity=0.274 Sum_probs=116.1
Q ss_pred CCceEEeecCcCcccCc------hhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCC
Q 002350 560 SVEHLSLQKNALNGLIP------GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKL 633 (933)
Q Consensus 560 ~L~~L~L~~n~l~~~~p------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 633 (933)
.++.++++.+.+.+.+| ..+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 34444444444444444 488889999999999999986 66 8888999999999999998 578888888999
Q ss_pred CEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhh
Q 002350 634 AMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERV 713 (933)
Q Consensus 634 ~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 713 (933)
+.|++++|++++ +| .+..
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~------------------------------------------------------------ 113 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEK------------------------------------------------------------ 113 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHH------------------------------------------------------------
T ss_pred CEEECcCCcCCc-CC-cccc------------------------------------------------------------
Confidence 999999999885 33 2322
Q ss_pred HHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCC-hhhhhccccCeeeccccccccccchh----------ccCCCCC
Q 002350 714 EIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIP-SDIGQLQAILALNLSNNSLSGSIPES----------FSNLKMI 782 (933)
Q Consensus 714 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------~~~l~~L 782 (933)
+++|+.|++++|++++..+ ..+..+++|+.|++++|.+++.+|.. +..+++|
T Consensus 114 -----------------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L 176 (198)
T 1ds9_A 114 -----------------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176 (198)
T ss_dssp -----------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred -----------------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCc
Confidence 2357789999999985322 47888999999999999999887763 8899999
Q ss_pred CEEECcCCeec
Q 002350 783 ESLDISYNKLT 793 (933)
Q Consensus 783 ~~LdLs~N~l~ 793 (933)
+.|| +|.++
T Consensus 177 ~~Ld--~~~i~ 185 (198)
T 1ds9_A 177 KKLD--GMPVD 185 (198)
T ss_dssp SEEC--CGGGT
T ss_pred EEEC--CcccC
Confidence 9998 66665
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=2.9e-13 Score=132.62 Aligned_cols=84 Identities=20% Similarity=0.191 Sum_probs=50.3
Q ss_pred cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccch--hccCCCCCCEEECcCCeecccCCcC----CcCCCCC
Q 002350 733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE--SFSNLKMIESLDISYNKLTGQIPPQ----LTALNFL 806 (933)
Q Consensus 733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~LdLs~N~l~~~ip~~----l~~l~~L 806 (933)
+|+.|||++|++++..|..++.+++|+.|+|++|+++ .+|. .++++++|+.|++++|.++ .+|.. +..++.|
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV 142 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence 4555666666665443344466666666666666664 3444 5666666666666666666 34443 6666667
Q ss_pred CeEEccCCcCcc
Q 002350 807 SIFNVSYNNLSG 818 (933)
Q Consensus 807 ~~L~ls~N~l~g 818 (933)
++||+++|....
T Consensus 143 ~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 143 RVLDFQKVKLKE 154 (176)
T ss_dssp SEETTEECCHHH
T ss_pred ceeCCCcCCHHH
Confidence 777777666543
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=4e-13 Score=131.68 Aligned_cols=134 Identities=22% Similarity=0.167 Sum_probs=91.2
Q ss_pred cccCCCCCCCEeeCCCCCCccccCccccccCCCCC-CCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhh
Q 002350 111 SLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLK-QLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQG 189 (933)
Q Consensus 111 ~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 189 (933)
..|...++|++|++++|.+... + .+..+. +|++|++++|.+++. ..+..+++|++|++++|++++..+ ..
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i-~-----~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~-~~ 83 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI-E-----NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE-GL 83 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC-C-----CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS-CH
T ss_pred HhcCCcCCceEEEeeCCCCchh-H-----HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCc-ch
Confidence 3566777888888888877632 2 244444 788888888887754 567777778888888877775533 34
Q ss_pred hcCCCCCCEEECCCCCCCCcchh--hcCCCCCCCEEEccCCcCCCCCch----hccCCCCCCEEECCCCcCC
Q 002350 190 ICELKNLFEMNLERNFIGSPLIT--CLKNLTRLKILDISSNQLNGSLPS----VISNLTSLEYLDLSHNNFE 255 (933)
Q Consensus 190 l~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~ 255 (933)
+..+++|++|++++|.++. +|. .++++++|++|++++|.++. .|. .+..+++|++|+++.|...
T Consensus 84 ~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 4677777777777777754 443 66777777777777777763 344 3667777777777776653
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=8.2e-13 Score=128.81 Aligned_cols=90 Identities=22% Similarity=0.224 Sum_probs=77.6
Q ss_pred cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350 733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 812 (933)
Q Consensus 733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 812 (933)
+|+.|+|++|++++.+|..|+.+++|+.|+|++|+|++..+..|+++++|++|||++|+|++..+..+..+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 56779999999998888889999999999999999998777778899999999999999997666678899999999999
Q ss_pred CCcCcccCCC
Q 002350 813 YNNLSGRTPD 822 (933)
Q Consensus 813 ~N~l~g~~p~ 822 (933)
+|++.+.++.
T Consensus 114 ~N~~~c~~~~ 123 (174)
T 2r9u_A 114 NNPWDCECRD 123 (174)
T ss_dssp SSCBCTTBGG
T ss_pred CCCccccccc
Confidence 9998876653
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=1.6e-12 Score=126.79 Aligned_cols=107 Identities=21% Similarity=0.246 Sum_probs=95.9
Q ss_pred cEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCC
Q 002350 735 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN 814 (933)
Q Consensus 735 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 814 (933)
+.+|+++|+++ .+|..+. +.|+.|+|++|+|++.+|..|+++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57999999997 7888775 89999999999999999999999999999999999999877777899999999999999
Q ss_pred cCcccCCC-CCcCCccCcccccCCCCCCCcc
Q 002350 815 NLSGRTPD-KGQFATFDESSYRGNPSLCAWL 844 (933)
Q Consensus 815 ~l~g~~p~-~~~~~~~~~~~~~gN~~lc~~~ 844 (933)
+|++..|. ...+..+....+.+|++-|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99987765 3567778888899999999875
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=1.1e-11 Score=135.97 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=88.7
Q ss_pred EEEcCCC-cCCCCCChhhhhccccCeeeccc-cccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccC
Q 002350 736 GLDLSCN-QLTGEIPSDIGQLQAILALNLSN-NSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSY 813 (933)
Q Consensus 736 ~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 813 (933)
.+|++++ +|+ .+|. ++.+++|+.|+|++ |+|++..|..|+++++|+.|||++|+|++..|..|.++++|++|||++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4788888 888 5788 88888899999986 999988888899999999999999999988888889999999999999
Q ss_pred CcCcccCCCCCcCCccCcccccCCCCCCCcc
Q 002350 814 NNLSGRTPDKGQFATFDESSYRGNPSLCAWL 844 (933)
Q Consensus 814 N~l~g~~p~~~~~~~~~~~~~~gN~~lc~~~ 844 (933)
|+|++..|.......+....+.+|++-|.|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 9998766654333346777788899888775
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=2e-12 Score=142.35 Aligned_cols=143 Identities=23% Similarity=0.234 Sum_probs=74.7
Q ss_pred CCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhc-----cCCCCCCEEEccCCcCccc----cCccc-c
Q 002350 488 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQL-----NNLERLRILDISENRLSGP----IASSL-N 557 (933)
Q Consensus 488 ~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~----~~~~~-~ 557 (933)
+|++|+|++|.+++.....+.....+|+.|+|++|.++......+ ...++|+.|+|++|.++.. ++..+ .
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 444555555544322222222211125555555555543322222 2345566666666665431 11122 3
Q ss_pred CCCCceEEeecCcCccc----CchhhccCCCccEEeCcCCcCccc----CchhhhcCCCccEEEcCCCcCCCCCchhhhc
Q 002350 558 LSSVEHLSLQKNALNGL----IPGELFRSCKLVTLNLRDNTFSGR----IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 629 (933)
Q Consensus 558 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 629 (933)
+++|++|+|++|.++.. ++..+...++|++|+|++|.++.. ++..+...++|++|+|++|+++......+..
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 55566666666665432 244556667778888888877643 3344556677888888888777554444544
Q ss_pred C
Q 002350 630 L 630 (933)
Q Consensus 630 l 630 (933)
+
T Consensus 262 ~ 262 (372)
T 3un9_A 262 L 262 (372)
T ss_dssp C
T ss_pred H
Confidence 3
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.18 E-value=7.2e-10 Score=123.70 Aligned_cols=123 Identities=11% Similarity=0.141 Sum_probs=69.8
Q ss_pred cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcC
Q 002350 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 592 (933)
Q Consensus 514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 592 (933)
|+.+.+.++... ....+|.+++.|+.+.+. +.+.......| +|.+|+.+.|..+ ++.+...+|.+|.+|+.+.+..
T Consensus 267 L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 267 LASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS 343 (394)
T ss_dssp CCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred ccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence 555555433222 344556666677777665 33444444455 6677777777543 5545556777778888888765
Q ss_pred CcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcC
Q 002350 593 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 643 (933)
Q Consensus 593 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 643 (933)
+ ++..-..+|.+|++|+.+++.++... -..+..+..|+.+.+..|.+
T Consensus 344 s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 344 S-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp T-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred c-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 4 55455677788888888888776543 24566677777777766544
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=2.2e-11 Score=133.64 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=81.4
Q ss_pred CcccEEEcCC-CcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEE
Q 002350 732 NRVTGLDLSC-NQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFN 810 (933)
Q Consensus 732 ~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 810 (933)
.+|+.|+|++ |+|++..|..|+.+++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+..++ |+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 4678899996 999988889999999999999999999999999999999999999999999977777777776 99999
Q ss_pred ccCCcCcccCC
Q 002350 811 VSYNNLSGRTP 821 (933)
Q Consensus 811 ls~N~l~g~~p 821 (933)
+++|++.+.++
T Consensus 110 l~~N~~~c~c~ 120 (347)
T 2ifg_A 110 LSGNPLHCSCA 120 (347)
T ss_dssp CCSSCCCCCGG
T ss_pred eeCCCccCCCc
Confidence 99999998665
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.17 E-value=9.1e-10 Score=122.86 Aligned_cols=113 Identities=6% Similarity=0.121 Sum_probs=90.8
Q ss_pred CcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhc
Q 002350 527 NVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE 605 (933)
Q Consensus 527 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 605 (933)
....+|.++..|+.+.+.++.. ......+ +++.|+.+.+. +.++.+....|.+|.+|+.++|..+ ++.....+|.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 4456789999999999986543 3344445 89999999996 4566666788999999999999875 66566788999
Q ss_pred CCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcC
Q 002350 606 HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 643 (933)
Q Consensus 606 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 643 (933)
|.+|+.+.+..+ ++..-..+|.+|++|+.+++.++..
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 999999999765 6656678999999999999987753
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.14 E-value=5.3e-12 Score=138.91 Aligned_cols=111 Identities=17% Similarity=0.159 Sum_probs=56.8
Q ss_pred CCCCEEeCCCCcCCCcchhhhc-----CCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhc-----
Q 002350 145 KQLKILVLGHNYFDDSIFSYLN-----TLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCL----- 214 (933)
Q Consensus 145 ~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l----- 214 (933)
++|++|+|++|.++......+. ..++|++|+|++|.++..........+++|++|+|++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4556666666666543333322 124666666666665433221122234456666666666655433333
Q ss_pred CCCCCCCEEEccCCcCCCC----CchhccCCCCCCEEECCCCcCC
Q 002350 215 KNLTRLKILDISSNQLNGS----LPSVISNLTSLEYLDLSHNNFE 255 (933)
Q Consensus 215 ~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~ 255 (933)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 2345666666666665432 2233345566666666666554
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.96 E-value=2.2e-08 Score=111.01 Aligned_cols=107 Identities=11% Similarity=0.085 Sum_probs=48.6
Q ss_pred hhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCC
Q 002350 530 VQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSN 608 (933)
Q Consensus 530 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 608 (933)
.+|.++..|+.+.+..+ ++......+ ++.+|+.+.+..+ +.......|.+|++|+.+.+.++.++.....+|.+|.+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 33444444555444433 222222233 4444555444322 33333344455555555555555554444445555555
Q ss_pred ccEEEcCCCcCCCCCchhhhcCCCCCEEEcc
Q 002350 609 LRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS 639 (933)
Q Consensus 609 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 639 (933)
|+.+.|..+ ++..-..+|.++++|+.+.+.
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 555555433 332333445555555555543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.88 E-value=8.3e-08 Score=106.36 Aligned_cols=130 Identities=8% Similarity=0.030 Sum_probs=62.0
Q ss_pred ccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhh
Q 002350 110 MSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQG 189 (933)
Q Consensus 110 ~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 189 (933)
.++|..-.+|+.+.+... ++ ..+..+|.++.+|+.+++..+ ++.....+|.++ +|+.+.+..+ ++.. ....
T Consensus 39 ~~~~~~~~~i~~v~ip~~-vt----~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I-~~~a 109 (379)
T 4h09_A 39 IPWYKDRDRISEVRVNSG-IT----SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKF-GDYV 109 (379)
T ss_dssp STTGGGGGGCSEEEECTT-EE----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEE-CTTT
T ss_pred ccccccccCCEEEEeCCC-cc----ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEe-ccce
Confidence 345555666777776532 22 122256777777777777543 444445556555 4555555433 2211 1123
Q ss_pred hcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCC
Q 002350 190 ICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN 252 (933)
Q Consensus 190 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 252 (933)
+... +|+.+.+..+ +......+|.++ +|+.+.+..+ ++......+..+.+++...+..+
T Consensus 110 F~~~-~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 110 FQGT-DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTT
T ss_pred eccC-CcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccc
Confidence 3332 5666666543 222223334433 3444444332 22233344555555555554433
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=1.4e-08 Score=110.62 Aligned_cols=82 Identities=15% Similarity=0.231 Sum_probs=44.5
Q ss_pred CcccEEEcCCCcCCCCCChhhh---hccccCeeeccccccccc----cchhccCCCCCCEEECcCCeecccCCcCCcC-C
Q 002350 732 NRVTGLDLSCNQLTGEIPSDIG---QLQAILALNLSNNSLSGS----IPESFSNLKMIESLDISYNKLTGQIPPQLTA-L 803 (933)
Q Consensus 732 ~~L~~LdLs~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~-l 803 (933)
++|+.|+|++|.+++..+..+. .++.|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+.. +
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al 331 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence 4556666666665543333332 356666677766666653 3333445667777777777665433222222 2
Q ss_pred CCCCeEEccCCc
Q 002350 804 NFLSIFNVSYNN 815 (933)
Q Consensus 804 ~~L~~L~ls~N~ 815 (933)
...++++.|+
T Consensus 332 --g~~~~~~~~~ 341 (362)
T 2ra8_A 332 --PMKIDVSDSQ 341 (362)
T ss_dssp --CSEEECCSBC
T ss_pred --CCEEEecCCc
Confidence 2456676665
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.68 E-value=1.7e-09 Score=111.46 Aligned_cols=82 Identities=26% Similarity=0.283 Sum_probs=50.5
Q ss_pred cCCCCCCEEecCCCcccCccCh-hhhcCCCCCCEEECCCCCCCCc-chhhcCCCCCCCEEEccCCcCCCCCc-------h
Q 002350 166 NTLPSLCTLILHWNRIEGSQTN-QGICELKNLFEMNLERNFIGSP-LITCLKNLTRLKILDISSNQLNGSLP-------S 236 (933)
Q Consensus 166 ~~l~~L~~L~Ls~n~i~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p-------~ 236 (933)
.++++|++|+|++|++++..+. ..+..+++|++|+|++|.+.+. ....+..+ +|++|+|++|.+.+..| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 4566677777777766653221 2345677777777777777663 11223333 77788888887776544 2
Q ss_pred hccCCCCCCEEE
Q 002350 237 VISNLTSLEYLD 248 (933)
Q Consensus 237 ~l~~l~~L~~L~ 248 (933)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356778888776
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.67 E-value=1.6e-08 Score=110.12 Aligned_cols=83 Identities=13% Similarity=0.277 Sum_probs=46.0
Q ss_pred CCCCceEEeecCcCcccCchhhc---cCCCccEEeCcCCcCccc----CchhhhcCCCccEEEcCCCcCCCCCchhhhc-
Q 002350 558 LSSVEHLSLQKNALNGLIPGELF---RSCKLVTLNLRDNTFSGR----IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ- 629 (933)
Q Consensus 558 l~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~- 629 (933)
+++|++|+|.+|.+....+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 56666666666666543333332 355677777777776643 2333345567777777777665433333332
Q ss_pred CCCCCEEEccCCc
Q 002350 630 LQKLAMMDLSRNK 642 (933)
Q Consensus 630 l~~L~~L~Ls~N~ 642 (933)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 2456666655
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=1.7e-08 Score=99.18 Aligned_cols=91 Identities=21% Similarity=0.230 Sum_probs=50.0
Q ss_pred hcCCCCCCEEecCCCcccCccC---hhhhcCCCCCCEEECCCCCCCCc----chhhcCCCCCCCEEEc--cCCcCCCCC-
Q 002350 165 LNTLPSLCTLILHWNRIEGSQT---NQGICELKNLFEMNLERNFIGSP----LITCLKNLTRLKILDI--SSNQLNGSL- 234 (933)
Q Consensus 165 l~~l~~L~~L~Ls~n~i~~~~~---~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L--s~n~l~~~~- 234 (933)
+...++|++|+|++|.+..... ...+...++|++|+|++|.+.+. +...+...++|++|+| ++|.+....
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 3444455555555554432111 12344455666666666666543 3445566667777777 667666432
Q ss_pred ---chhccCCCCCCEEECCCCcCC
Q 002350 235 ---PSVISNLTSLEYLDLSHNNFE 255 (933)
Q Consensus 235 ---p~~l~~l~~L~~L~L~~n~l~ 255 (933)
...+...++|++|++++|.+.
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCcCEEeccCCCCC
Confidence 234445577777777777654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=4e-07 Score=93.72 Aligned_cols=65 Identities=26% Similarity=0.361 Sum_probs=34.2
Q ss_pred CCcccEEEcCCCcCCC--CCChhhhhccccCeeeccccccccccchhccCCC--CCCEEECcCCeecccCC
Q 002350 731 VNRVTGLDLSCNQLTG--EIPSDIGQLQAILALNLSNNSLSGSIPESFSNLK--MIESLDISYNKLTGQIP 797 (933)
Q Consensus 731 l~~L~~LdLs~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~LdLs~N~l~~~ip 797 (933)
++.|+.|+||+|++++ .+|..++.+++|+.|+|++|+|++. ..+..++ +|++|+|++|.+++.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 3455556666666655 3444555555666666666665543 2233333 55555555555555444
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.24 E-value=3.7e-07 Score=89.47 Aligned_cols=87 Identities=18% Similarity=0.179 Sum_probs=57.3
Q ss_pred CCCCceEEeecCcCccc----CchhhccCCCccEEeCcCCcCccc----CchhhhcCCCccEEEc--CCCcCCCC----C
Q 002350 558 LSSVEHLSLQKNALNGL----IPGELFRSCKLVTLNLRDNTFSGR----IPHQINEHSNLRFLLL--GGNHLQGP----I 623 (933)
Q Consensus 558 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--~~N~l~~~----~ 623 (933)
.++|++|+|++|.+... +...+...++|++|+|++|.+... +...+...++|++|+| ++|.+... +
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 34555555555555422 233445556788888888877643 4556666778888888 77887743 3
Q ss_pred chhhhcCCCCCEEEccCCcCC
Q 002350 624 PDQLCQLQKLAMMDLSRNKFS 644 (933)
Q Consensus 624 p~~l~~l~~L~~L~Ls~N~l~ 644 (933)
...+...++|+.|++++|.+.
T Consensus 144 ~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCcCEEeccCCCCC
Confidence 445666788999999888875
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.97 E-value=2.3e-06 Score=81.41 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=17.5
Q ss_pred CCCEEECCCCC-CCCcchhhcCCCCCCCEEEccCC
Q 002350 195 NLFEMNLERNF-IGSPLITCLKNLTRLKILDISSN 228 (933)
Q Consensus 195 ~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n 228 (933)
+|++|+|++|. +++.....+.++++|++|++++|
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 35555555543 44444444555555555555555
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=4e-06 Score=79.76 Aligned_cols=83 Identities=16% Similarity=0.106 Sum_probs=55.7
Q ss_pred CCCEEecCCCcccCccChhhhcCCCCCCEEECCCCC-CCCcchhhcCCC----CCCCEEEccCCc-CCCCCchhccCCCC
Q 002350 170 SLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNF-IGSPLITCLKNL----TRLKILDISSNQ-LNGSLPSVISNLTS 243 (933)
Q Consensus 170 ~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~ 243 (933)
+|++||++++.++.... ..+..+++|++|+|++|. +++.....++.+ ++|++|+|++|. ++...-..+.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 45555555555443322 345566667777777764 666555666664 479999999984 77665567788899
Q ss_pred CCEEECCCCc
Q 002350 244 LEYLDLSHNN 253 (933)
Q Consensus 244 L~~L~L~~n~ 253 (933)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999998886
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.67 E-value=2.2e-05 Score=76.23 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=45.2
Q ss_pred hcCCCCCCEEecCCCcccCccC---hhhhcCCCCCCEEECCCCCCCCc----chhhcCCCCCCCEEEccCCcC---CCC-
Q 002350 165 LNTLPSLCTLILHWNRIEGSQT---NQGICELKNLFEMNLERNFIGSP----LITCLKNLTRLKILDISSNQL---NGS- 233 (933)
Q Consensus 165 l~~l~~L~~L~Ls~n~i~~~~~---~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l---~~~- 233 (933)
+..-+.|+.|+|++|+|..... ...+..-+.|++|+|+.|.|.+. +.+++..-+.|++|+|++|.. ...
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 3334444444444444432111 12334455566666666666543 234455556677777765422 211
Q ss_pred ---CchhccCCCCCCEEECCCCcC
Q 002350 234 ---LPSVISNLTSLEYLDLSHNNF 254 (933)
Q Consensus 234 ---~p~~l~~l~~L~~L~L~~n~l 254 (933)
+...+..-+.|+.|+++.|.+
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhCCCcCeEeccCCCc
Confidence 223445566777777776654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.28 E-value=0.00019 Score=69.53 Aligned_cols=118 Identities=14% Similarity=0.195 Sum_probs=76.4
Q ss_pred cCCCCCCCEeeCCCC-CCccccCccccccCCCCCCCCEEeCCCCcCCCc----chhhhcCCCCCCEEecCCCcccCccC-
Q 002350 113 FHPLEELQSLDLSVN-IFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDS----IFSYLNTLPSLCTLILHWNRIEGSQT- 186 (933)
Q Consensus 113 f~~l~~L~~LdLs~n-~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~- 186 (933)
+..-+.|++|+|++| .+.........+++..-+.|++|+|++|.+.+. +...+..-+.|++|+|++|.|.....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345677888888875 666544444446677777888888888887643 34445566778888888888764322
Q ss_pred --hhhhcCCCCCCEEECCCC---CCCCc----chhhcCCCCCCCEEEccCCcC
Q 002350 187 --NQGICELKNLFEMNLERN---FIGSP----LITCLKNLTRLKILDISSNQL 230 (933)
Q Consensus 187 --~~~l~~l~~L~~L~Ls~n---~l~~~----~~~~l~~l~~L~~L~Ls~n~l 230 (933)
...+..-+.|++|+|++| .+... +...+..-+.|+.|+++.|.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 134556677888888754 33432 344555667788888876643
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.91 E-value=0.00093 Score=60.50 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=25.6
Q ss_pred EEEcCCCcCC-CCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCC
Q 002350 736 GLDLSCNQLT-GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYN 790 (933)
Q Consensus 736 ~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 790 (933)
.+|.++++|+ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4677777775 34554332 23444555555554433444444444444444433
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.53 E-value=0.0027 Score=57.43 Aligned_cols=58 Identities=24% Similarity=0.264 Sum_probs=43.5
Q ss_pred Ceeeccccccc-cccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcc
Q 002350 759 LALNLSNNSLS-GSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 818 (933)
Q Consensus 759 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 818 (933)
..++-+++.++ ..+|..+. .+|+.|||++|+|+..-+..|..+++|+.|+|++|++.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 37888888887 35665432 468899999999987777778888888888877666544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=57.99 E-value=13 Score=31.14 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=35.1
Q ss_pred CCCCcccccccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCC
Q 002350 101 PYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN 155 (933)
Q Consensus 101 ~~~~~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n 155 (933)
.|..++.|+..+|...+.|+.+.+..+ +...+..+|..+.+|+.+.+...
T Consensus 4 ~g~~vt~I~~~aF~~c~~L~~i~iP~~-----v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 4 EGEPVVGMDKSLFAGNTVIREITVQPN-----IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCCSSCSCTTTTCTTCCCEEECTT-----SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCCccCEecHHHhcCCCCCcEEEcCCc-----hheEcHHHHhccCCccEEEEcCC
Confidence 566777888889999999999888754 22222356777777777776543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.03 E-value=39 Score=28.09 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=26.2
Q ss_pred CcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCC
Q 002350 208 SPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN 252 (933)
Q Consensus 208 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 252 (933)
.....+|.+|++|+.+.+..+ ++.+...+|.++.+|+.+.+...
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 334456666777777766654 33355566666777766666543
Done!