BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002352
(932 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/367 (23%), Positives = 157/367 (42%), Gaps = 40/367 (10%)
Query: 505 YNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKNAWVFLQ 564
+N ++ ++ GK D + TI R + ++F+ P+ G+S+++ K + FL
Sbjct: 451 WNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLD 510
Query: 565 PLTLDLWVTSGCFFIFIGF-VVWVLEHRVN------EDFRGPAQHQ---------VGTSF 608
PL ++W+ F +IG VV L R + E+F + Q + S
Sbjct: 511 PLAYEIWMC--IVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSL 568
Query: 609 WFSFSTMVFSHRERVISNLA-RFVMIVWYFVVLILTQSYTAXXXXXXTVQQLQPTITDFQ 667
WFS + + +L+ R V VW+F LI+ SYTA TV+++ I +
Sbjct: 569 WFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAE 628
Query: 668 MLIKSGD------NVGYRKDSFVFGILKQLGFDEKKLIAYSSPEECDELFQKGSAGGGIA 721
L K + + G K+ F K FD K+ Y E +F + +A G
Sbjct: 629 DLSKQTEIAYGTLDSGSTKEFFRRS--KIAVFD--KMWTYMRSAE-PSVFVRTTAEGVAR 683
Query: 722 AAFDEIPYT-------KPFIGQYCSKYTL-IERTFETAGFGFAFPLHSPLVPEVSRAILN 773
+ Y +I Q T+ + ++ G+G A P S L V+ A+L
Sbjct: 684 VRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLK 743
Query: 774 VTEGNKMKEIEDEWFKKRASC--PDASNAGSSHSLGLNSFRGLFLIAGTAATSALIIFLA 831
++E + +++++W+ + C D+ + + +L L++ G+F I A+++ L
Sbjct: 744 LSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALI 803
Query: 832 VFVCEHR 838
F + R
Sbjct: 804 EFCYKSR 810
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/340 (21%), Positives = 138/340 (40%), Gaps = 53/340 (15%)
Query: 86 AILGPEKSMQTNFIIQLGNKSQVPILSFSATSPSLTSIRSSYFFRGSLNDSSQVGAITAI 145
AI GP + TN + + N +VP + L + + +++ + +S AI +
Sbjct: 77 AIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDN-KDTFYVNLYPDYASLSHAILDL 135
Query: 146 IKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQ--IEKELYK 203
+++ WR A +Y D+ G + L A + R+ R + P+ +DD + KE+ +
Sbjct: 136 VQSLKWRSATVVY-DDSTGLIRLQELIMAPSRYNIRLKIRQL--PIDSDDSRPLLKEMKR 192
Query: 204 LFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLLRTLEPSVIDSMQG 263
+ R+ I ++ ++I ++A +G+M + +I T TL+ +D
Sbjct: 193 --GREFRI-IFDCSHTMAAQILKQAMAMGMMTEYYHFIFT--------TLDLYALD---- 237
Query: 264 VIGVRPYVPKTKAFENFRV-------------RWKRKFLQENP----SLFDVELNILGLF 306
+ PY FR+ +W + LQ P L D +
Sbjct: 238 ---LEPYRYSGVNLTGFRILNVDNPHVSAIVEKWSMERLQAAPRAESGLLDGVMMTDAAL 294
Query: 307 AYDATRALAVAVEKAGITSFGFDKTNVSSNATDLEAFGISRNGPKLLQALSSTRFKGLTG 366
YDA ++V ++A ++ N+ R G + + + +++GLTG
Sbjct: 295 LYDAVHIVSVCYQRA---------PQMTVNSLQCHRHKAWRFGGRFMNFIKEAQWEGLTG 345
Query: 367 DYVF--VDGQLQSSAFEIINVN-NGARGVGFWTPEKGLTL 403
VF G +II++ +G VG W+P GL +
Sbjct: 346 RIVFNKTSGLRTDFDLDIISLKEDGLEKVGVWSPADGLNI 385
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 118/279 (42%), Gaps = 26/279 (9%)
Query: 111 LSFSATSPSLTSIRS-SYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEEMIP 169
LSF+AT+P L + YFFR +D++ AI ++K + W+ + D Q E+
Sbjct: 113 LSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRN 172
Query: 170 SLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKAN 229
LT L D + S + D + KL R+ + ++ +++F A
Sbjct: 173 DLTGVLYGEDIEI---SDTESFSNDPCT--SVKKLKGNDVRIILGQFDQNMAAKVFCCAY 227
Query: 230 EIGLMNKGCVWIM-----------TEGMTNLLRTLEPSVIDSMQGVIGVRPYVPKTKAFE 278
E + WI+ N R L +++ +M+G IGV +K +
Sbjct: 228 EENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIK 287
Query: 279 NFRVRWKRKFLQE-NPSLFDVELNILGLFAYDATRALAVAVEKAGITSFGFDKTNVSSNA 337
+ +++ +E N V + +AYD +A +++A + + SS
Sbjct: 288 TISGKTPQQYEREYNNKRSGVGPSKFHGYAYDGIWVIAKTLQRA------METLHASSRH 341
Query: 338 TDLEAFGISRN--GPKLLQALSSTRFKGLTGDYVFVDGQ 374
++ F + + G +L A++ T F G+TG VF +G+
Sbjct: 342 QRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRNGE 380
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 137/345 (39%), Gaps = 57/345 (16%)
Query: 107 QVPILSFSATSPSLTSIRSSYFF-RGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGE 165
Q+P +S+++T+P L+ R FF R DS Q A+ I+KA GW + + YGE
Sbjct: 141 QIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGE 200
Query: 166 EMIPSLTDALQAIDTRVPYRSVISPLATD------DQIEKELYKLFTMQTRVFILHMLPS 219
+ + S T + +SV P D+I K+L L T +R ++
Sbjct: 201 KGVESFTQISKEAGGLCIAQSVRIPQERKDRTIDFDRIIKQL--LDTPNSRAVVIFANDE 258
Query: 220 LGSRIF---EKANEIGLMNKGCVWIMTEGMTNLLRTLEPSVIDSMQGVIGVRPYVPKTKA 276
+I ++A+++G +W+ ++ + + L D +G I ++P +
Sbjct: 259 DIKQILAAAKRADQVGHF----LWVGSDSWGSKINPLHQHE-DIAEGAITIQPKRATVEG 313
Query: 277 FE----------NFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALA--------VAV 318
F+ N R W ++ +EN F+ +L I G D R
Sbjct: 314 FDAYFTSRTLENNRRNVWFAEYWEEN---FNCKLTISGSKKEDTDRKCTGQERIGKDSNY 370
Query: 319 EKAGITSFGFDKTNVSSNA-----TDLEA--FGIS-----RNGPKLLQALSSTRFKGLTG 366
E+ G F D ++A DL A G+ G KLL+ + F G G
Sbjct: 371 EQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQAGGKKLLKYIRHVNFNGSAG 430
Query: 367 DYVFVD------GQLQSSAFEIINVNN-GARGVGFWTPEKGLTLK 404
V + G+ ++ N N G R +G WT E L ++
Sbjct: 431 TPVMFNKNGDAPGRYDIFQYQTTNTTNPGYRLIGQWTDELQLNIE 475
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 140/346 (40%), Gaps = 59/346 (17%)
Query: 107 QVPILSFSATSPSLTSIRSSYFF-RGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGE 165
Q+P +S+++T+P L+ R FF R DS Q A+ I+KA GW + + YGE
Sbjct: 141 QIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGE 200
Query: 166 EMIPSLTDALQ-------AIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 218
+ + S T + A R+P + D+I K+L L T +R ++
Sbjct: 201 KGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDF-DRIIKQL--LDTPNSRAVVIFAND 257
Query: 219 SLGSRIF---EKANEIGLMNKGCVWIMTEGMTNLLRTLEPSVIDSMQGVIGVRPYVPKTK 275
+I ++A+++G +W+ ++ + + L D +G I ++P +
Sbjct: 258 EDIKQILAAAKRADQVGHF----LWVGSDSWGSKINPLHQHE-DIAEGAITIQPKRATVE 312
Query: 276 AFE----------NFRVRWKRKFLQENPSLFDVELNILGLFAYDATRALA--------VA 317
F+ N R W ++ +EN F+ +L I G D R
Sbjct: 313 GFDAYFTSRTLENNRRNVWFAEYWEEN---FNCKLTISGSKKEDTDRKCTGQERIGKDSN 369
Query: 318 VEKAGITSFGFDKTNVSSNA-----TDLEA--FGI-----SRNGPKLLQALSSTRFKGLT 365
E+ G F D ++A DL A G+ G KLL+ + + F G
Sbjct: 370 YEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQAGGKKLLKYIRNVNFNGSA 429
Query: 366 GDYVFVD------GQLQSSAFEIINVNN-GARGVGFWTPEKGLTLK 404
G V + G+ ++ N +N G R +G WT E L ++
Sbjct: 430 GTPVMFNKNGDAPGRYDIFQYQTTNTSNPGYRLIGQWTDELQLNIE 475
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/335 (21%), Positives = 128/335 (38%), Gaps = 45/335 (13%)
Query: 86 AILGPEKS---MQTNFIIQLGNKSQVPILSFSATSPSLTS-IRSSYFFRGSLNDSSQVGA 141
++GP S +Q ++QL N +P +++SATS L+ YF R +D+ Q A
Sbjct: 132 GVIGPGSSSVAIQVQNLLQLFN---IPQIAYSATSMDLSDKTLFKYFMRVVPSDAQQARA 188
Query: 142 ITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKEL 201
+ I+K + W ++ + YGE + + D + + I A + +K L
Sbjct: 189 MVDIVKRYNWTYVSAVHTEGNYGESGMEAFKDMSAKEGISIAHSYKIYSNAGEQSFDKLL 248
Query: 202 YKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTEGMTNLLRTLEPSVID 259
KL + + RV + +GL + + + ++G + V D
Sbjct: 249 KKLTSHLPKARVVACFCEGMTVRGLLMAMRRLGLAGE-FLLLGSDGWADRY-----DVTD 302
Query: 260 SMQ----GVIGVRPYVPKTKAFENFRVRWKRKFLQENP-------SLFDVELNIL----G 304
Q G I ++ P K F+++ ++ + + NP F L
Sbjct: 303 GYQREAVGGITIKLQSPDVKWFDDYYLKLRPETNHRNPWFQEFWQHRFQCRLEGFPQENS 362
Query: 305 LFAYDATRALAVAVEKAGITSFGFDKTNVSSNATDLEAFGISR--------------NGP 350
+ +L + + GF + S A L +S +G
Sbjct: 363 KYNKTCNSSLTLKTHHVQDSKMGFVINAIYSMAYGLHNMQMSLCPGYAGLCDAMKPIDGR 422
Query: 351 KLLQALSSTRFKGLTGDYVFVDGQLQSSA-FEIIN 384
KLL++L T F G++GD + D S +EI+N
Sbjct: 423 KLLESLMKTNFTGVSGDTILFDENGDSPGRYEIMN 457
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%)
Query: 434 PTNKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVP 493
P + +R VP + D E G+ I + K + + ++ V
Sbjct: 25 PISGTCIRDSVPCRSQLNRTHSPPPDAPRPEKRCCKGFCIDILKRLAHTIGFSYDLYLVT 84
Query: 494 YAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549
+ G +N ++ +VF + D +G TI RS+ V+F++P+ E+G+S++V
Sbjct: 85 NGKHGKKIDGVWNGMIGEVFYQRADMAIGSLTINEERSEIVDFSVPFVETGISVMV 140
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 434 PTNKRKLRIGVPVTKGFSDFVKVTIDPNTRESASVT----GYSIAVFKAVIEELPYAVAY 489
P + +R VP K FVK I+ +T E +V G+ I + K + + +
Sbjct: 25 PLTETCVRNTVPCRK----FVK--INNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDL 78
Query: 490 DFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549
V + + +N ++ +V + VG TI RS+ V+F++P+ E+G+S++V
Sbjct: 79 YLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMV 138
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 440 LRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDG 499
LRIGV + F+ V ID + R + +TGY + + + + +++ + P
Sbjct: 10 LRIGVIESVPFT-IVANVIDTSGRNTTKLTGYVLDLIEYLRDKMGFVADVQLAP------ 62
Query: 500 TSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549
+ SY L+ + G +D +GD T+ + R + V F+ +++ + +++
Sbjct: 63 -PNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILM 111
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 730 TKPFIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFK 789
T F+ Q T I ++ G+G P+ SP +++ AIL + E K+ ++++W++
Sbjct: 228 TIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWR 287
Query: 790 KRASCPDASNAGSSHSLGLNS 810
CP+ + +S +LG+ +
Sbjct: 288 GNG-CPEEESKEAS-ALGVQN 306
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 77/205 (37%), Gaps = 32/205 (15%)
Query: 107 QVPILSFSATSPSLTSI-RSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGE 165
Q+P +S+++TS L+ R YF R D Q A+ I++ F W + + YGE
Sbjct: 141 QIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGE 200
Query: 166 EMIPSLTDALQAIDTRVPYRSVISPLATD----------DQIEKELYKLFTMQTRVFILH 215
++A + R++ A D + +EL L RV +L
Sbjct: 201 T-------GIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIREL--LQKPNARVVVLF 251
Query: 216 MLPSLGSRIFEKANEIGLMNKGCVWIMTEG---MTNLLRTLEPSVIDSMQGVIGVRP--- 269
M + AN + N W+ ++G ++++ E ++ + P
Sbjct: 252 MRSDDSRELIAAANRV---NASFTWVASDGWGAQESIVKGSEHVAYGAITLELASHPVRQ 308
Query: 270 ---YVPKTKAFENFRVRWKRKFLQE 291
Y + N R W R F ++
Sbjct: 309 FDRYFQSLNPYNNHRNPWFRDFWEQ 333
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 86 AILGPEKS---MQTNFIIQLGNKSQVPILSFSATSPSLTS-IRSSYFFRGSLNDSSQVGA 141
++GP S +Q ++QL + +P +++SATS L+ YF R +D+ Q A
Sbjct: 126 GVIGPGSSSVAIQVQNLLQLFD---IPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARA 182
Query: 142 ITAIIKAFGWREAVPIYVDNQYGE 165
+ I+K + W ++ + YGE
Sbjct: 183 MLDIVKRYNWTYVSAVHTEGNYGE 206
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 730 TKPFIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFK 789
T F+ Q T I ++ G+G P+ SP +++ AIL + E K+ ++++W++
Sbjct: 194 TIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWR 253
Query: 790 KRASCPD 796
CP+
Sbjct: 254 GNG-CPE 259
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 730 TKPFIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFK 789
T F+ Q T I ++ G+G P+ SP +++ AIL + E K+ ++++W++
Sbjct: 194 TIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWR 253
Query: 790 KRASCPD 796
CP+
Sbjct: 254 GNG-CPE 259
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 86 AILGPEKS---MQTNFIIQLGNKSQVPILSFSATSPSLTS-IRSSYFFRGSLNDSSQVGA 141
++GP S +Q ++QL + +P +++SATS L+ YF R +D+ Q A
Sbjct: 131 GVIGPGSSSVAIQVQNLLQLFD---IPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARA 187
Query: 142 ITAIIKAFGWREAVPIYVDNQYGE 165
+ I+K + W ++ + YGE
Sbjct: 188 MLDIVKRYNWTYVSAVHTEGNYGE 211
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 730 TKPFIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFK 789
T F+ Q T I ++ G+G P+ SP +++ AIL + E K+ ++++W++
Sbjct: 194 TIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHMMKEKWWR 253
Query: 790 KRASCPD 796
CP+
Sbjct: 254 GNG-CPE 259
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 463 RESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVG 522
RE +++ G++ + ++E+ Y AQ D +G +N ++ ++ K D V
Sbjct: 41 RELSTILGFTYEI--RLVEDGKYG--------AQDD--VNGQWNGMVRELIDHKADLAVA 88
Query: 523 DTTILANRSKFVEFTLPYTESGVSMI 548
I R K ++F+ P+ G+S++
Sbjct: 89 PLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 730 TKPFIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFK 789
T +I Q T I ++ G+G P+ SP +++ AIL + E +K+ ++++W++
Sbjct: 192 TIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHIMKEKWWR 251
Query: 790 KRASCPD 796
+ CP+
Sbjct: 252 G-SGCPE 257
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 470 GYSIAVFKAVIEELPYAVAYDFVPYAQPDGT-----SSGSYNDLMYQVFRGKFDAVVGDT 524
GY I + K EL + + + + DG G +N ++ ++ K D V
Sbjct: 34 GYCIDLLK----ELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKELIDHKADLAVAPL 89
Query: 525 TILANRSKFVEFTLPYTESGVSMI 548
TI R K ++F+ P+ GVS++
Sbjct: 90 TITHVREKAIDFSKPFMTLGVSIL 113
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 730 TKPFIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFK 789
T F+ Q T I ++ G+G P+ SP +++ AIL + E K+ ++++W++
Sbjct: 194 TIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHMMKEKWWR 253
Query: 790 KRASCPD 796
CP+
Sbjct: 254 GNG-CPE 259
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 730 TKPFIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFK 789
T F+ Q T I ++ G+G P+ SP +++ AIL + E K+ ++++W++
Sbjct: 194 TIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHMMKEKWWR 253
Query: 790 KRASCPD 796
CP+
Sbjct: 254 GNG-CPE 259
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 730 TKPFIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFK 789
T F+ Q T I ++ G+G P+ SP +++ AIL + E K+ ++++W++
Sbjct: 194 TIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWR 253
Query: 790 KRASCPD 796
CP+
Sbjct: 254 GNG-CPE 259
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 463 RESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVG 522
RE +++ G++ + ++E+ Y AQ D +G +N ++ ++ K D V
Sbjct: 41 RELSTILGFTYEI--RLVEDGKYG--------AQDD--VNGQWNGMVRELIDHKADLAVA 88
Query: 523 DTTILANRSKFVEFTLPYTESGVSMI 548
I R K ++F+ P+ G+S++
Sbjct: 89 PLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 730 TKPFIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFK 789
T F+ Q T I ++ G+G P+ SP +++ AIL + E K+ ++++W++
Sbjct: 194 TIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRKKITIAILQLQEEGKLHMMKEKWWR 253
Query: 790 KRASCPD 796
CP+
Sbjct: 254 GNG-CPE 259
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 463 RESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVG 522
RE +++ G++ + ++E+ Y AQ D +G +N ++ ++ K D V
Sbjct: 41 RELSTILGFTYEI--RLVEDGKYG--------AQDD--VNGQWNGMVRELIDHKADLAVA 88
Query: 523 DTTILANRSKFVEFTLPYTESGVSMI 548
I R K ++F+ P+ G+S++
Sbjct: 89 PLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 730 TKPFIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFK 789
T F+ Q T I ++ G+G P+ SP +++ AIL + E K+ ++++W++
Sbjct: 194 TIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWR 253
Query: 790 KRASCPD 796
CP+
Sbjct: 254 GNG-CPE 259
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 463 RESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVG 522
RE +++ G++ + ++E+ Y AQ D +G +N ++ ++ K D V
Sbjct: 41 RELSTILGFTYEI--RLVEDGKYG--------AQDD--VNGQWNGMVRELIDHKADLAVA 88
Query: 523 DTTILANRSKFVEFTLPYTESGVSMI 548
I R K ++F+ P+ G+S++
Sbjct: 89 PLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 730 TKPFIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFK 789
T F+ Q T I ++ G+G P+ SP +++ AIL + E K+ ++++W++
Sbjct: 194 TIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWR 253
Query: 790 KRASCPD 796
CP+
Sbjct: 254 GNG-CPE 259
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 463 RESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVG 522
RE +++ G++ + ++E+ Y AQ D +G +N ++ ++ K D V
Sbjct: 41 RELSTILGFTYEI--RLVEDGKYG--------AQDD--VNGQWNGMVRELIDHKADLAVA 88
Query: 523 DTTILANRSKFVEFTLPYTESGVSMI 548
I R K ++F+ P+ G+S++
Sbjct: 89 PLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 730 TKPFIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFK 789
T F+ Q T I ++ G+G P+ SP +++ AIL + E K+ ++++W++
Sbjct: 193 TIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWR 252
Query: 790 KRASCPD 796
CP+
Sbjct: 253 GNG-CPE 258
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 463 RESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVG 522
RE +++ G++ + ++E+ Y AQ D ++G +N ++ ++ K D V
Sbjct: 40 RELSTILGFTYEI--RLVEDGKYG--------AQDD--ANGQWNGMVRELIDHKADLAVA 87
Query: 523 DTTILANRSKFVEFTLPYTESGVSMI 548
I R K ++F+ P+ G+S++
Sbjct: 88 PLAITYVREKVIDFSKPFMTLGISIL 113
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 130/333 (39%), Gaps = 59/333 (17%)
Query: 107 QVPILSFSATSPSLTSIRSSY--FFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYG 164
++P+L + T S+ S +S + F R S Q +++ + W + + D+ G
Sbjct: 95 RIPVLGLT-TRMSIYSDKSIHLSFLRTVPPYSHQSSVWFEMMRVYNWNHIILLVSDDHEG 153
Query: 165 EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRI 224
L L+ +++ P + + L + ++ RV IL + +
Sbjct: 154 RAAQKRLETLLEERESKAEKVLQFDPGTKN--VTALLMEARELEARVIILSASEDDAATV 211
Query: 225 FEKANEIGLMNKGCVWIMTEGMT--NLLRTLEPSVIDSMQGVIGVRPYVPKTKAFENFRV 282
+ A + + G VW++ E N LR + G+IG++ K
Sbjct: 212 YRAAAMLNMTGSGYVWLVGEREISGNALRY-------APDGIIGLQLINGKN-------- 256
Query: 283 RWKRKFLQENPSLFDVELNILGLFAYDATRALAVAVEKAGITSFGFDKTNVSSNATDLEA 342
E+ + D +G+ A +A+ +EK IT D T+
Sbjct: 257 --------ESAHISDA----VGVVA----QAVHELLEKENIT----DPPRGCVGNTN--- 293
Query: 343 FGISRNGPKLLQALSSTRF-KGLTGDYVF-VDGQLQSSAFEIINVNNGARGVGFWTPEKG 400
I + GP + L S+++ G+TG F DG + + + I+N+ N K
Sbjct: 294 --IWKTGPLFKRVLMSSKYADGVTGRVEFNEDGDRKFANYSIMNLQN----------RKL 341
Query: 401 LTLKLRSNSTTKSKLRPIIWPGDSTSDPKGWEI 433
+ + + + + R IIWPG T P+G+++
Sbjct: 342 VQVGIYNGTHVIPNDRKIIWPGGETEKPRGYQV 374
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 730 TKPFIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFK 789
T +I Q T I ++ G+G P+ SP +++ AIL + E +K+ ++++W++
Sbjct: 194 TIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHIMKEKWWR 253
Query: 790 KRASCP 795
+ CP
Sbjct: 254 G-SGCP 258
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 470 GYSIAVFKAVIEELPYAVAYDFV---PYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTI 526
GY I + K + L ++ V Y D G +N ++ ++ K D V TI
Sbjct: 36 GYCIDLLKELAHILGFSYEIRLVEDGKYGAQD--DKGQWNGMVKELIDHKADLAVAPLTI 93
Query: 527 LANRSKFVEFTLPYTESGVSMI 548
R K ++F+ P+ GVS++
Sbjct: 94 THVREKAIDFSKPFMTLGVSIL 115
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In
Complex With Glutamate At 2.1 Angstrom Resolution
pdb|3C31|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C31|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C32|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C32|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C33|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C33|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C34|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C34|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C35|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C35|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C36|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
pdb|3C36|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
Length = 258
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 733 FIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRA 792
++ Q T I ++ G+G P+ SP +++ AIL + E K+ ++++W++
Sbjct: 196 YVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 255
Query: 793 SCPD 796
CP+
Sbjct: 256 -CPE 258
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 470 GYSIAVFKAVIEELPYAVAYDFVPY----AQPDGTSSGSYNDLMYQVFRGKFDAVVGDTT 525
GY + + K + L + VP AQ D G +N ++ ++ + D V T
Sbjct: 34 GYCLDLLKELSNILGFLYDVKLVPDGKYGAQND---KGEWNGMVKELIDHRADLAVAPLT 90
Query: 526 ILANRSKFVEFTLPYTESGVSMI 548
I R K ++F+ P+ G+S++
Sbjct: 91 ITYVREKVIDFSKPFMTLGISIL 113
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
pdb|2WKY|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
Length = 258
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 733 FIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRA 792
++ Q T I ++ G+G P+ SP +++ AIL + E K+ ++++W++
Sbjct: 196 YVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 255
Query: 793 SCPD 796
CP+
Sbjct: 256 -CPE 258
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 470 GYSIAVFKAVIEELPYAVAYDFVPY----AQPDGTSSGSYNDLMYQVFRGKFDAVVGDTT 525
GY + + K + L + VP AQ D G +N ++ ++ + D V T
Sbjct: 34 GYCLDLLKELSNILGFLYDVKLVPDGKYGAQND---KGEWNGMVKELIDHRADLAVAPLT 90
Query: 526 ILANRSKFVEFTLPYTESGVSMI 548
I R K ++F+ P+ G+S++
Sbjct: 91 ITYVREKVIDFSKPFMTLGISIL 113
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 22/200 (11%)
Query: 107 QVPILSFSATSPSLTSI-RSSYFFRGSLNDSSQVGAITAIIKAFGWREAVPIYVDNQYGE 165
Q+P +S+++TS L+ R YF R D Q A+ I++ F W + + YGE
Sbjct: 140 QIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGE 199
Query: 166 EMIPSLTDALQAIDTRVPY-----RSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL 220
I + + + + RS I + D + +EL L RV +L M
Sbjct: 200 TGIEAFEQEARLRNISIATAEKVGRSNIRK--SYDSVIREL--LQKPNARVVVLFMRSDD 255
Query: 221 GSRIFEKANEIGLMNKGCVWIMTEG---MTNLLRTLEPSVIDSMQGVIGVRP------YV 271
+ A+ N W+ ++G ++++ E ++ + +P Y
Sbjct: 256 SRELIAAASR---ANASFTWVASDGWGAQESIIKGSEHVAYGAITLELASQPVRQFDRYF 312
Query: 272 PKTKAFENFRVRWKRKFLQE 291
+ N R W R F ++
Sbjct: 313 QSLNPYNNHRNPWFRDFWEQ 332
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F34|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F35|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F35|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F36|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2OJT|A Chain A, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2OJT|B Chain B, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2QS1|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS1|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS2|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS2|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS3|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS3|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS4|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
Length = 258
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 733 FIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRA 792
++ Q T I ++ G+G P+ SP +++ AIL + E K+ ++++W++
Sbjct: 196 YVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 255
Query: 793 SCP 795
CP
Sbjct: 256 -CP 257
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 470 GYSIAVFKAVIEELPYAVAYDFVPY----AQPDGTSSGSYNDLMYQVFRGKFDAVVGDTT 525
GY + + K + L + VP AQ D G +N ++ ++ + D V T
Sbjct: 34 GYCLDLLKELSNILGFLYDVKLVPDGKYGAQND---KGEWNGMVKELIDHRADLAVAPLT 90
Query: 526 ILANRSKFVEFTLPYTESGVSMI 548
I R K ++F+ P+ G+S++
Sbjct: 91 ITYVREKVIDFSKPFMTLGISIL 113
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1YCJ|B Chain B, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1VSO|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Antagonist (S)-Atpo At 1.85 A
Resolution
pdb|2PBW|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|2PBW|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|3GBA|A Chain A, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|B Chain B, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|C Chain C, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|D Chain D, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBB|A Chain A, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3GBB|B Chain B, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3S2V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|3S2V|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|4E0X|A Chain A, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4E0X|B Chain B, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4DLD|A Chain A, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
pdb|4DLD|B Chain B, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
Length = 257
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 733 FIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRA 792
++ Q T I ++ G+G P+ SP +++ AIL + E K+ ++++W++
Sbjct: 196 YVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 255
Query: 793 SCP 795
CP
Sbjct: 256 -CP 257
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 470 GYSIAVFKAVIEELPYAVAYDFVPY----AQPDGTSSGSYNDLMYQVFRGKFDAVVGDTT 525
GY + + K + L + VP AQ D G +N ++ ++ + D V T
Sbjct: 34 GYCLDLLKELSNILGFLYDVKLVPDGKYGAQND---KGEWNGMVKELIDHRADLAVAPLT 90
Query: 526 ILANRSKFVEFTLPYTESGVSMI 548
I R K ++F+ P+ G+S++
Sbjct: 91 ITYVREKVIDFSKPFMTLGISIL 113
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With
Glutamate
pdb|2ZNT|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Dysiherbaine
pdb|2ZNU|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Neodysiherbaine A
pdb|3FUZ|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FUZ|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FV1|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV1|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV2|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FV2|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FVG|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVG|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVK|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVK|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVO|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
pdb|3FVO|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
Length = 256
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 733 FIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRA 792
++ Q T I ++ G+G P+ SP +++ AIL + E K+ ++++W++
Sbjct: 195 YVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 254
Query: 793 SCP 795
CP
Sbjct: 255 -CP 256
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 470 GYSIAVFKAVIEELPYAVAYDFVPY----AQPDGTSSGSYNDLMYQVFRGKFDAVVGDTT 525
GY + + K + L + VP AQ D G +N ++ ++ + D V T
Sbjct: 33 GYCLDLLKELSNILGFIYDVKLVPDGKYGAQND---KGEWNGMVKELIDHRADLAVAPLT 89
Query: 526 ILANRSKFVEFTLPYTESGVSMI 548
I R K ++F+ P+ G+S++
Sbjct: 90 ITYVREKVIDFSKPFMTLGISIL 112
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 730 TKPFIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFK 789
T F+ Q T I ++ G+G P SP +++ AIL + E K+ ++++W++
Sbjct: 194 TIEFVTQRNCNLTQIGGLIDSKGYGVGTPKGSPYRDKITIAILQLQEEGKLHMMKEKWWR 253
Query: 790 KRASCPD 796
CP+
Sbjct: 254 GNG-CPE 259
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 463 RESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVG 522
RE +++ G++ + ++E+ Y AQ D +G +N ++ ++ K D V
Sbjct: 41 RELSTILGFTYEI--RLVEDGKYG--------AQDD--VNGQWNGMVRELIDHKADLAVA 88
Query: 523 DTTILANRSKFVEFTLPYTESGVSMI 548
I R K ++F+ P+ G+S++
Sbjct: 89 PLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|3TQL|A Chain A, Structure Of The Amino Acid Abc Transporter, Periplasmic
Amino Acid- Binding Protein From Coxiella Burnetii
Length = 227
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 465 SASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDT 524
S V G+ + KAV ++ S+ ++ L+ + GKFDA+ G
Sbjct: 21 SGQVEGFGADIVKAVCKQXQAVCT-----------ISNQPWDSLIPSLKLGKFDALFGGX 69
Query: 525 TILANRSKFVEFTLPYTESGVSMI 548
I R K V+FT PY + VS I
Sbjct: 70 NITTARQKEVDFTDPYYTNSVSFI 93
>pdb|1II5|A Chain A, Crystal Structure Of The Glur0 Ligand Binding Core Complex
With L- Glutamate
Length = 233
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 464 ESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGD 523
++A+ TG S+ V++AV E + Y + + S+G + V G+ D ++G
Sbjct: 23 KNAAFTGISLDVWRAVAESQKWNSEY-----VRQNSISAG-----ITAVAEGELDILIGP 72
Query: 524 TTILANRSKF--VEFTLPYTESGVSMIVP 550
++ R+ + FT PY SG+ +++P
Sbjct: 73 ISVTPERAAIEGITFTQPYFSSGIGLLIP 101
>pdb|1IIT|A Chain A, Glur0 Ligand Binding Core Complex With L-Serine
pdb|1IIW|A Chain A, Glur0 Ligand Binding Core: Closed-Cleft Ligand-Free
Structure
Length = 232
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 464 ESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGD 523
++A+ TG S+ V++AV E + Y + + S+G + V G+ D ++G
Sbjct: 23 KNAAFTGISLDVWRAVAESQKWNSEY-----VRQNSISAG-----ITAVAEGELDILIGP 72
Query: 524 TTILANRSKF--VEFTLPYTESGVSMIVP 550
++ R+ + FT PY SG+ +++P
Sbjct: 73 ISVTPERAAIEGITFTQPYFSSGIGLLIP 101
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 730 TKPFIGQYCSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFK 789
T F+ Q T I ++ G+G P+ SP +++ AI + E K+ ++++W++
Sbjct: 194 TIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAICQLQEEGKLHMMKEKWWR 253
Query: 790 KRASCP 795
CP
Sbjct: 254 GNG-CP 258
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 463 RESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVG 522
RE +++ G++ + ++E+ Y AQ D +G +N ++ ++ K D V
Sbjct: 41 RELSTILGFTYEI--RLVEDGKYG--------AQDD--VNGQWNGMVRELIDHKADLAVA 88
Query: 523 DTTILANRSKFVEFTLPYTESGVSMI 548
I R K ++F+ P+ G+S++
Sbjct: 89 PLAITCVREKVIDFSKPFMTLGISIL 114
>pdb|2Q2C|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|B Chain B, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|C Chain C, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|D Chain D, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2PVU|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2A|A Chain A, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|B Chain B, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|C Chain C, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|D Chain D, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
Length = 272
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 740 KYTLIE--RTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKK 790
K +IE + F + +G FP +S L +V A+ NV K EI +WF K
Sbjct: 211 KLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWFGK 263
>pdb|2RCA|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RCB|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCB|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCA|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 292
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 28/119 (23%)
Query: 455 KVTIDPNTRESASVT--------------------GYSIAVFKAVIEELPYAVAYDFVPY 494
++ +DP T +SA + GY I + + + E+L A+DF Y
Sbjct: 33 QLCLDPGTNDSARLDALFAALVNGSVPRTLRRCCYGYCIDLLERLAEDL----AFDFELY 88
Query: 495 AQPDGT----SSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549
DG G + L+ + G+ V +I + RS+ V+FT P+ + + ++V
Sbjct: 89 IVGDGKYGALRDGRWTGLVGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMV 147
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 739 SKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFK 789
K + + F G+G P +SPL +S I + + D+W+K
Sbjct: 236 CKLLTVGKPFAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFIDLLHDKWYK 286
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic
Glutamate Receptor-like Glurdelta2 In Complex With D-
Serine
Length = 265
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 738 CSKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
CS YT + T G+G A SP S+ IL + + M ++ +W+ K C
Sbjct: 208 CSFYT-VGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQC 263
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 194 DDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242
D +I+ +L KL Q+ + +L+ + IFE AN +GL G WI+
Sbjct: 183 DSKIQNQLKKL---QSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIV 228
>pdb|2Y7I|A Chain A, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351.
pdb|2Y7I|B Chain B, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351
Length = 229
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 438 RKLRIGVPVTKGFSDFVKVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQP 497
R L G T +FV D + + + G+ I V AV +E+ ++
Sbjct: 6 RTLHFGTSATYAPYEFV----DADNK----IVGFDIDVANAVCKEMQAECSF-------- 49
Query: 498 DGTSSGSYNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV 549
++ S++ L+ + KFDAV+ + R + V F+ PY E G+S +V
Sbjct: 50 ---TNQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYE-GLSAVV 97
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 194 DDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 242
D +I+ +L KL Q+ + +L+ + IFE AN +GL G WI+
Sbjct: 182 DSKIQNQLKKL---QSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIV 227
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RC8|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC8|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC9|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC9|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC7|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 294
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 739 SKYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFK 789
K + + F G+G P +SPL +S I M + D+W+K
Sbjct: 238 CKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYK 288
>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
Length = 384
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 348 NGPKLLQALSSTRFKGLTGDYVFVD-GQLQSSAFEIINV-NNGARGVGFWTPE 398
G + +AL RF+GLTG+ F + G+ + +I + ++G R +G+W +
Sbjct: 319 QGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNED 371
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L ++E + +++++W+ + C
Sbjct: 213 LDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKGEC 259
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L ++E + +++++W+ + C
Sbjct: 211 LDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKGEC 257
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L ++E + +++++W+ + C
Sbjct: 211 LDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKGEC 257
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L ++E + +++++W+ + C
Sbjct: 244 LDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWWYDKGEC 290
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L ++E + +++++W+ + C
Sbjct: 215 LDSKGYGIATPKGSSLRTPVNLAVLKLSEQGVLDKLKNKWWYDKGEC 261
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L ++E + +++++W+ + C
Sbjct: 214 LDSKGYGIATPKGSSLRTPVNLAVLKLSEQGVLDKLKNKWWYDKGEC 260
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 725 DEIPYTKPFIGQYCS-----KYTLIERTFETAGFGFAFPLHSPLVPEVSRAILNVTEGNK 779
D + + P + Y + K ++ +G P +SP +++A+LN+ E
Sbjct: 153 DAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENGT 212
Query: 780 MKEIEDEWFKKRASC 794
+ + D+WF + S
Sbjct: 213 YQSLYDKWFDPKNSL 227
>pdb|1SZ7|A Chain A, Crystal Structure Of Human Bet3
Length = 200
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 19/103 (18%)
Query: 467 SVTGYSIA--VFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDT 524
S+T +S A F ++E P DFV PD SS Y++L+ V RG + V
Sbjct: 101 SITNWSPAGDEFSLILENNPLV---DFVEL--PDNHSSLIYSNLLCGVLRGALEMVQ--- 152
Query: 525 TILANRSKFVEFTLP---YTESGVSMIVPIKDN----KKKNAW 560
+A +KFV+ TL TE + I I+DN ++ AW
Sbjct: 153 --MAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEEAAAW 193
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L ++E + +++++W+ + C
Sbjct: 215 LDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWWYDKGEC 261
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L ++E + +++++W+ + C
Sbjct: 215 LDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWWYDKGEC 261
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L ++E + +++++W+ + C
Sbjct: 215 LDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWWYDKGEC 261
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
Length = 292
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASCPDASNAGSSH 804
++ G+G A P S L V+ A+L + E + +++++W+ + C S G S
Sbjct: 228 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC--GSGGGDSK 282
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L ++E + +++++W+ + C
Sbjct: 215 LDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWWYDKGEC 261
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L ++E + +++++W+ + C
Sbjct: 212 LDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWWYDKGEC 258
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
Length = 280
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASCPDASNAGSSH 804
++ G+G A P S L V+ A+L + E + +++++W+ + C S G S
Sbjct: 216 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC--GSGGGDSK 270
>pdb|2CFH|A Chain A, Structure Of The Bet3-Tpc6b Core Of Trapp
pdb|2CFH|B Chain B, Structure Of The Bet3-Tpc6b Core Of Trapp
Length = 194
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 15/93 (16%)
Query: 467 SVTGYSIA--VFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDT 524
S+T +S A F ++E P DFV PD SS Y++L+ V RG + V
Sbjct: 106 SITNWSPAGDEFSLILENNPLV---DFVEL--PDNHSSLIYSNLLCGVLRGALEMVQ--- 157
Query: 525 TILANRSKFVEFTLP---YTESGVSMIVPIKDN 554
+A +KFV+ TL TE + I I+DN
Sbjct: 158 --MAVEAKFVQDTLKGDGVTEIRMRFIRRIEDN 188
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 231 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 277
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Ampa
pdb|3DLN|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Glutamate
Length = 278
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L ++E + +++++W+ + C
Sbjct: 231 LDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWWYDKGEC 277
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|C Chain C, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
Length = 279
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 231 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 277
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3R7X|B Chain B, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3UA8|A Chain A, Crystal Structure Analysis Of A 6-Amino Quinazolinedione
Sulfonamide Bound To Human Glur2
Length = 263
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 215 LDSKGYGIATPKGSSLRNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 261
>pdb|3KXC|A Chain A, Mutant Transport Protein
Length = 194
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 15/93 (16%)
Query: 467 SVTGYSIA--VFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDT 524
S+T +S A F ++E P DFV PD SS Y++L+ V RG + V
Sbjct: 106 SITNWSPAGDEFSLILENNPLV---DFVEL--PDNHSSLIYSNLLCGVLRGALEMVQ--- 157
Query: 525 TILANRSKFVEFTLP---YTESGVSMIVPIKDN 554
+A +KFV+ TL TE + I I+DN
Sbjct: 158 --MAVEAKFVQDTLKGDGVTEIRMRFIRRIEDN 188
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine At 1.8 Angstroms
Resolution
Length = 263
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 215 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 261
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|3B7D|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|G Chain G, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|H Chain H, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
Length = 261
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 215 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 261
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
pdb|1P1W|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
Length = 263
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 215 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 261
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|C Chain C, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
Length = 261
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 214 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 260
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686a Mutant In Complex With Quisqualate At 2.1
Resolution
pdb|3B6Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
Mutant T686a In Complex With Glutamate At 2.0 Resolution
Length = 263
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 215 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 261
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y450w) Mutant In Complex With The Partial Agonist Kainic
Acid At 2.1 A Resolution
Length = 263
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 215 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 261
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1MM6|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM6|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM7|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1N0T|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1NNK|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.85 A Resolution.
Crystallization With Zinc Ions.
pdb|1NNP|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1NNP|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1MS7|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MXU|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXV|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXW|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXX|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXY|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXZ|A Chain A, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|B Chain B, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|C Chain C, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MY0|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY1|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY2|A Chain A, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|B Chain B, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|C Chain C, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY3|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY4|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MQG|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQG|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQI|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Fluoro-willardiine At 1.35 Angstroms
Resolution
pdb|1MQJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Willardiine At 1.65 Angstroms Resolution
pdb|1SYH|A Chain A, X-ray Structure Of The Glur2 Ligand-binding Core (s1s2j)
In Complex With (s)-cpw399 At 1.85 A Resolution.
pdb|1WVJ|A Chain A, Exploring The Glur2 Ligand-Binding Core In Complex With
The Bicyclic Ampa Analogue (S)-4-Ahcp
pdb|2AIX|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Thio-Atpa At 2.2 A Resolution.
pdb|2AL4|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL5|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2AL5|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2CMO|A Chain A, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|2P2A|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|2P2A|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|3BKI|P Chain P, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BFU|A Chain A, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|B Chain B, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|C Chain C, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|D Chain D, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFT|A Chain A, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|B Chain B, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|C Chain C, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|2CMO|B Chain B, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|3TZA|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|3TZA|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|4G8M|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
pdb|4G8M|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
Length = 263
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 215 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 261
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L ++E + +++++W+ + C
Sbjct: 212 LDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWWYDKGEC 258
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
Length = 263
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 215 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 261
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|B Chain B, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|C Chain C, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
Length = 262
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 215 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 261
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 215 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 261
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex
With Kainate
pdb|1P1O|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
Mutant L650t In Complex With Quisqualate
pdb|1P1Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1U|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
pdb|1P1U|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
Length = 263
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 215 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 261
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
pdb|3PD9|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
Length = 260
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 213 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 259
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3LSX|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3RT6|B Chain B, Fluorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|3RT8|A Chain A, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|4F29|A Chain A, Quisqualate Bound To The Ligand Binding Domain Of Glua3i
pdb|4F39|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3
pdb|4F3G|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3i
Length = 258
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L ++E + +++++W+ + C
Sbjct: 212 LDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWWYDKGEC 258
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Br-hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1SYI|A Chain A, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1SYI|B Chain B, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1XHY|A Chain A, X-ray Structure Of The Y702f Mutant Of The Glur2
Ligand-binding Core (s1s2j) In Complex With Kainate At
1.85 A Resolution
Length = 263
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 215 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 261
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|D Chain D, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H06|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|E Chain E, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|H Chain H, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|J Chain J, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|L Chain L, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|N Chain N, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|P Chain P, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3LSL|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|D Chain D, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|G Chain G, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3M3L|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|D Chain D, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|G Chain G, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3RTF|B Chain B, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|D Chain D, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|F Chain F, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|B Chain B, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|D Chain D, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|F Chain F, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|4GXS|B Chain B, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
pdb|4GXS|D Chain D, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
Length = 258
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 212 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 258
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|D Chain D, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|F Chain F, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 212 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 258
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 505 YNDLMYQVFRGKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIV----PIKDNKKKNAW 560
+N ++ ++ GK D + TI R + ++F+ P+ G+S+++ PI+ + +
Sbjct: 68 WNGMVGELVYGKADIAIAPLTITLCREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQ 127
Query: 561 VFLQPLTLDLWVTSGCFF 578
+ TLD T CFF
Sbjct: 128 TEIAYGTLDSGSTK-CFF 144
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|C Chain C, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|D Chain D, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
Length = 259
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 213 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 259
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 215 LDSKGYGIATPKGSSLGNAVNLAVLKLDEQGLLDKLKNKWWYDKGEC 261
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|D Chain D, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|F Chain F, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T96|B Chain B, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|D Chain D, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|F Chain F, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9H|B Chain B, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|D Chain D, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|F Chain F, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9U|A Chain A, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|B Chain B, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|C Chain C, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|A Chain A, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|B Chain B, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 212 LDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 258
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop
Form)
pdb|3M3K|A Chain A, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|C Chain C, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|E Chain E, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|4F1Y|A Chain A, Cnqx Bound To The Ligand Binding Domain Of Glua3
pdb|4F1Y|C Chain C, Cnqx Bound To The Ligand Binding Domain Of Glua3
Length = 258
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 212 LDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 258
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F2Q|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F31|B Chain B, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F31|D Chain D, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F3B|A Chain A, Glutamate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 748 FETAGFGFAFPLHSPLVPEVSRAILNVTEGNKMKEIEDEWFKKRASC 794
++ G+G A P S L V+ A+L + E + +++++W+ + C
Sbjct: 212 LDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 258
>pdb|4GJH|A Chain A, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|B Chain B, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|C Chain C, Crystal Structure Of The Traf Domain Of Traf5
Length = 178
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 455 KVTIDPNTRESASVTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFR 514
KVT D ++ +V G++++VF Y DG+ G++ L + V R
Sbjct: 29 KVT-DYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMR 87
Query: 515 GKFDAVV 521
G+FD+++
Sbjct: 88 GEFDSLL 94
>pdb|2V25|A Chain A, Structure Of The Campylobacter Jejuni Antigen Peb1a, An
Aspartate And Glutamate Receptor With Bound Aspartate
pdb|2V25|B Chain B, Structure Of The Campylobacter Jejuni Antigen Peb1a, An
Aspartate And Glutamate Receptor With Bound Aspartate
Length = 259
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 515 GKFDAVVGDTTILANRSKFVEFTLPYTESGVSMIVPIKDNKKKN 558
G DAV+ TI R + F+ PY + + ++V +K+ K K+
Sbjct: 100 GSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLV-LKEKKYKS 142
>pdb|4I62|A Chain A, 1.05 Angstrom Crystal Structure Of An Amino Acid Abc
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Canada Mdr_19a Bound To L-Arginine
Length = 269
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 468 VTGYSIAVFKAVIEELPYAVAYDFVPYAQPDGTSSGSYNDLMYQVFRGKFDAVVGDTTIL 527
+ G I + KA+ EL V + P S+++++ V GK D + +
Sbjct: 64 IVGSDIELAKAIATEL--GVELELSPM---------SFDNVLASVQSGKADLAISGVSKT 112
Query: 528 ANRSKFVEFTLPYTESGVSMIVPIKD 553
RSK +F+ PY + +IV D
Sbjct: 113 DERSKVFDFSTPYYTAKNKLIVKKSD 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,269,551
Number of Sequences: 62578
Number of extensions: 1082481
Number of successful extensions: 2430
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2277
Number of HSP's gapped (non-prelim): 167
length of query: 932
length of database: 14,973,337
effective HSP length: 108
effective length of query: 824
effective length of database: 8,214,913
effective search space: 6769088312
effective search space used: 6769088312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)